RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9499
(289 letters)
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus
norvegicus} SCOP: a.4.5.14
Length = 109
Score = 222 bits (568), Expect = 1e-74
Identities = 94/103 (91%), Positives = 98/103 (95%)
Query: 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 181
+VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDC
Sbjct: 1 MVKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDC 60
Query: 182 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTP 224
FVKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR+KR
Sbjct: 61 FVKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKRFKRLQ 103
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding
domain, forkhead transcription factors, interleukin
enhancer binding factor; 2.4A {Homo sapiens} SCOP:
a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Length = 111
Score = 222 bits (568), Expect = 2e-74
Identities = 53/108 (49%), Positives = 67/108 (62%)
Query: 112 DSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNS 171
+Q G+ S KPPYSY LI AI +P K+LTL+GI I +PYYR WQNS
Sbjct: 4 TGGQQMGRGSDSKPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNS 63
Query: 172 IRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
IRHNLSLN F+K+PR PGKG++W +DP +E +F +RR R
Sbjct: 64 IRHNLSLNRYFIKVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 111
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double
helix, transcription-DNA complex; HET: DNA; 2.50A {Homo
sapiens} PDB: 1d5v_A
Length = 102
Score = 219 bits (561), Expect = 1e-73
Identities = 64/98 (65%), Positives = 77/98 (78%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYI+LITMAI Q+P K LTLS I ++IM FPYYRE WQNSIRH+LS NDCFV
Sbjct: 3 KPPYSYISLITMAIQQAPGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSFNDCFV 62
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYK 221
K+ R P PGKG+YW L P + +MF+NG +LRR+KR+K
Sbjct: 63 KVARSPDKPGKGSYWALHPSSGNMFENGCYLRRQKRFK 100
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis,
winged helix protein, protein/DNA complex; HET: DNA; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 97
Score = 219 bits (559), Expect = 2e-73
Identities = 92/97 (94%), Positives = 94/97 (96%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCF
Sbjct: 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
VKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 61 VKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged;
winged helix protein, structure, transcription; NMR
{Rattus norvegicus} SCOP: a.4.5.14
Length = 100
Score = 207 bits (529), Expect = 1e-68
Identities = 57/98 (58%), Positives = 72/98 (73%), Gaps = 1/98 (1%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSYIALITMAI S +LTL+ I E++M +FP++R + W+NS+RHNLSLNDCFV
Sbjct: 2 KPPYSYIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFV 61
Query: 184 KIPREPGNP-GKGNYWTLDPMAEDMFDNGSFLRRRKRY 220
K+ R+P P GK NYW L+P +E F +G F RRR R
Sbjct: 62 KVLRDPSRPWGKDNYWMLNPNSEYTFADGVFRRRRYRL 99
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription
factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Length = 142
Score = 183 bits (467), Expect = 5e-59
Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 107 PGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-F 165
PGP S + +PPYSY+A+I AI + K++TL I +I FPY++
Sbjct: 2 PGPSRPSASWQ-NSVSERPPYSYMAMIQFAINSTERKRMTLKDIYTWIEDHFPYFKHIAK 60
Query: 166 PAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPP 225
P W+NSIRHNLSL+D FV RE GK ++WT+ P A + P
Sbjct: 61 PGWKNSIRHNLSLHDMFV---RETSANGKVSFWTIHPSANRYLTLDQVFKPLDPGSPQLP 117
Query: 226 DFLLRDPH 233
+ L
Sbjct: 118 EHLESQQK 125
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer,
monomer, winged-helix, magnesium, transcription/DNA
complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F
2kiu_A 3qrf_F
Length = 93
Score = 181 bits (461), Expect = 1e-58
Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 13/106 (12%)
Query: 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 181
IV+PP++Y LI AI++S ++LTL+ I + F Y+R W+N++RHNLSL+ C
Sbjct: 1 IVRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKC 60
Query: 182 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDF 227
FV++ KG WT+D + +RR + P
Sbjct: 61 FVRVEN-----VKGAVWTVDE--------VEYQKRRSQKITGSPTL 93
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal
rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB:
3co7_C* 2k86_A 2uzk_A
Length = 117
Score = 170 bits (433), Expect = 4e-54
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 115 KQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREK-----FPAWQ 169
K SY LIT AI S K+LTLS I E+++ PY+++K W+
Sbjct: 2 KSSSSRRNAWGNLSYADLITKAIESSAEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWK 61
Query: 170 NSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPDFL 228
NSIRHNLSL+ F+++ E GK ++W L+P + +G RRR F
Sbjct: 62 NSIRHNLSLHSKFIRVQNE--GTGKSSWWMLNP---EGGKSGKSPRRRAASMDNNSKFA 115
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP:
a.4.5.14
Length = 150
Score = 170 bits (432), Expect = 1e-53
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 100 PTDGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFP 159
+ ++ G SY LI+ AI +P K+LTL+ I E+++ P
Sbjct: 16 RGSHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVP 75
Query: 160 YYREK-----FPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFL 214
Y+++K W+NSIRHNLSL+ F+K+ E GK ++W L+P + +G
Sbjct: 76 YFKDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEA--TGKSSWWMLNP---EGGKSGKAP 130
Query: 215 RRRKRYKRTPPDFLLRDPHA 234
RRR + L A
Sbjct: 131 RRRAASMDSSSKLLRGRSKA 150
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding
domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
SCOP: a.4.5.14
Length = 85
Score = 162 bits (412), Expect = 3e-51
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 7/83 (8%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPA-----WQNSIRHNLSL 178
SY LI+ AI +P K+LTL+ I E+++ PY+++K + W+NSIRHNLSL
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 179 NDCFVKIPREPGNPGKGNYWTLD 201
+ F+K+ E GK ++W L+
Sbjct: 65 HSKFIKVHNEA--TGKSSWWMLN 85
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP;
1.87A {Homo sapiens} PDB: 3co6_C*
Length = 110
Score = 161 bits (410), Expect = 1e-50
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 102 DGSISPGPEGDSDKQDGKNSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYY 161
+ ++ G SY LI+ AI +P K+LTL+ I E+++ PY+
Sbjct: 2 SHMLEDPGAVTGPRKGGSRRNAWGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYF 61
Query: 162 REK-----FPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTLDPMAE 205
++K W+NSIRHNLSL+ F+K+ E GK ++W L+P
Sbjct: 62 KDKGDSNSSAGWKNSIRHNLSLHSKFIKVHNEA--TGKSSWWMLNPEGG 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.62
Identities = 38/269 (14%), Positives = 75/269 (27%), Gaps = 88/269 (32%)
Query: 22 HHTGPRTSFDSPLD-------LRGAPHPGDMCNLSSPSPSSE---DD---SDAD------ 62
H P L+ + N P P+ DD + A+
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQ------EQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 63 --INVESDDGDEQGMSNV-RRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDKQDGK 119
++ + V + EF + +D++ +++ ++D K
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL-EGNDIH------ALAAKLLQENDTTLVK 118
Query: 120 -NSIVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSL 178
++K +YI + + P K + S + ++ N L
Sbjct: 119 TKELIK---NYIT--ARIMAKRPFDKKSNSAL-----------------FRAVGEGNAQL 156
Query: 179 NDCFVKIPREPGNPGKGN---YW--------TLDPMAEDMFDN-----GSFLRRRKRYKR 222
F G G+GN Y+ T + D+ +R ++
Sbjct: 157 VAIF-------G--GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 223 TPP---DFL--LRDPHAAAMASFLGSDPY 246
+ L L +P +L S P
Sbjct: 208 VFTQGLNILEWLENPSNTPDKDYLLSIPI 236
>1sfe_A ADA O6-methylguanine-DNA methyltransferase; enzyme, nucleic acid
binding DNA repair protein, DNA-binding protein; 2.10A
{Escherichia coli} SCOP: a.4.2.1 c.55.7.1
Length = 180
Score = 28.3 bits (64), Expect = 2.3
Identities = 6/16 (37%), Positives = 7/16 (43%)
Query: 25 GPRTSFDSPLDLRGAP 40
T PLD+RG
Sbjct: 81 QRDTPLTLPLDIRGTA 96
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex,
citrate AS protein LI ligand binding, inhibitor design;
HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB:
2zhx_A*
Length = 238
Score = 27.9 bits (63), Expect = 2.9
Identities = 12/41 (29%), Positives = 14/41 (34%), Gaps = 17/41 (41%)
Query: 241 LGSDPYH-----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
+G DPY GL FS + P V P S
Sbjct: 76 VGQDPYPTPGHAVGL--------SFS----VAPDVRPWPRS 104
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex,
hydrolase/inhibitor complex, EB repair, lytic protein,
epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP:
c.18.1.1
Length = 231
Score = 27.2 bits (61), Expect = 6.2
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 17/40 (42%)
Query: 241 LGSDPYH----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
LG DPYH +GL FS + P +PPS
Sbjct: 64 LGQDPYHGGQANGL--------AFS----VAYGFP-VPPS 90
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid
9-phosphate phosphohydrolase, nucleotidyltransferase;
HET: PEG PG4 EDO PGE; 1.10A {Bacteroides
thetaiotaomicron} PDB: 3e84_A 3e81_A*
Length = 164
Score = 26.7 bits (60), Expect = 6.2
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 95 DVNGCPTDGSISPGPEGDSDK----QDG 118
D++G TDG + G+ K D
Sbjct: 10 DIDGVWTDGGMFYDQTGNEWKKFNTSDS 37
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A
{Mus musculus}
Length = 168
Score = 26.7 bits (60), Expect = 6.3
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 95 DVNGCPTDGSISPGPEGDSDK----QDG 118
+++GC T+G I + +D
Sbjct: 15 NIDGCLTNGHIYVSGDQKEIISYDVKDA 42
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the
core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus}
PDB: 2owq_A 3nt7_C
Length = 218
Score = 26.8 bits (60), Expect = 6.4
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 18/76 (23%)
Query: 200 LDPMAEDMFDNGSFLRRRKRYKRTPP--DFL--LRDPHAAAMASFLGSDPYH---HGLLP 252
+ + E + S+L R + P F L+ P G DPY G+
Sbjct: 23 MSQLVEFYNEVASWLLRDETS---PIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGV-- 77
Query: 253 HSLQHGGFSFMSPLPP 268
F +
Sbjct: 78 ------PFESPNFTKK 87
>3rea_A Protein NEF; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3
domain, PR binding; 2.00A {Hiv-1 M} PDB: 3rbb_A 3reb_A
1efn_B 1avv_A 1avz_A 2nef_A
Length = 166
Score = 26.5 bits (59), Expect = 6.9
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 165 FPAWQN-----SIRHNLSLNDCFVKIPREP-----GNPGKGNYWTLDPM 203
FP WQN IR+ L+ CF +P EP N G+ N L PM
Sbjct: 81 FPDWQNYTPGPGIRYPLTFGWCFKLVPVEPEKVEEANEGENNSL-LHPM 128
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 27.2 bits (61), Expect = 7.8
Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 23/80 (28%)
Query: 149 GICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPREPG-------------NPGKG 195
I E IM+ ++ E + D ++ EPG P G
Sbjct: 331 LIQESIMTWGGFHAEVVK-------TPIRWEDGYIIPSNEPGLGIELDMDVVKRHTPYTG 383
Query: 196 NYWTLDPMAED--MFDNGSF 213
L M E + +
Sbjct: 384 ERLHL-QMGEHPVDVKDLAP 402
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 26.4 bits (58), Expect = 7.9
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 56 EDDSDADINVESDDGDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISP 107
E+ + DD ++ + F + D+NG +G I
Sbjct: 21 EERLEGINKQFLDDPKYSNDEDLPSKLEAFKVKYMEF--DLNG---NGDIDI 67
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus}
SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Length = 244
Score = 26.8 bits (60), Expect = 8.7
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 18/41 (43%)
Query: 241 LGSDPYH-----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
+G DPYH HGL FS + VP PPS
Sbjct: 85 IGQDPYHHPGQAHGL--------AFS----VRANVP-PPPS 112
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing,
disease mutation, DNA damage, glycosidase, HOST- virus
interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens}
PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A*
2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E*
1yuo_A 3tkb_A 4skn_E* 1okb_A
Length = 223
Score = 26.3 bits (59), Expect = 9.1
Identities = 16/41 (39%), Positives = 17/41 (41%), Gaps = 18/41 (43%)
Query: 241 LGSDPYH-----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
LG DPYH HGL FS + VP PPS
Sbjct: 61 LGQDPYHGPNQAHGL--------CFS----VQRPVP-PPPS 88
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A
{Coxiella burnetii}
Length = 232
Score = 26.4 bits (59), Expect = 9.2
Identities = 17/41 (41%), Positives = 18/41 (43%), Gaps = 18/41 (43%)
Query: 241 LGSDPYH-----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
LG DPYH HGL FS + P VP PPS
Sbjct: 67 LGQDPYHGPNQAHGL--------AFS----VRPGVP-APPS 94
>4eug_A UDG, UNG, protein (glycosylase); hydrolase; 1.40A {Escherichia
coli} SCOP: c.18.1.1 PDB: 5eug_A 1eug_A 2uug_A 3eug_A
2eug_A 1uug_A 1lqj_A 1lqm_A 1lqg_A 1flz_A 1eui_A 2jhq_A
Length = 229
Score = 26.4 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 18/41 (43%)
Query: 241 LGSDPYH-----HGLLPHSLQHGGFSFMSPLPPAVPLLPPS 276
LG DPYH HGL FS + P + +PPS
Sbjct: 61 LGQDPYHGPGQAHGL--------AFS----VRPGIA-IPPS 88
>4en2_B Protein NEF; human immunodeficiency virus 1, HIV, NEF, antigen
presentation, HOST defense, adaptor protein complex 1,
MU1 subunit; 2.58A {Human immunodeficiency virus 1} PDB:
4emz_C 2xi1_A 2xi1_B 1qa5_A* 1qa4_A 1zec_A
Length = 206
Score = 26.5 bits (59), Expect = 9.7
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 11/49 (22%)
Query: 165 FPAWQN-----SIRHNLSLNDCFVKIPREP-----GNPGKGNYWTLDPM 203
FP WQN +R+ L+ C+ +P EP N G+ L P+
Sbjct: 121 FPDWQNYTPGPGVRYPLTFGWCYKLVPVEPDKVEEANKGENTSL-LHPV 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,750,231
Number of extensions: 285426
Number of successful extensions: 681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 35
Length of query: 289
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 196
Effective length of database: 4,105,140
Effective search space: 804607440
Effective search space used: 804607440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)