RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9499
(289 letters)
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 97
Score = 170 bits (432), Expect = 1e-54
Identities = 92/97 (94%), Positives = 94/97 (96%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
VKPPYSYIALITMAILQSP KKLTLSGICEFI +RFPYYREKFPAWQNSIRHNLSLNDCF
Sbjct: 1 VKPPYSYIALITMAILQSPQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSLNDCF 60
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
VKIPREPGNPGKGNYWTLDP +EDMFDNGSFLRRRKR
Sbjct: 61 VKIPREPGNPGKGNYWTLDPQSEDMFDNGSFLRRRKR 97
>d2c6ya1 a.4.5.14 (A:1-98) Interleukin enhancer binding factor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 162 bits (411), Expect = 2e-51
Identities = 50/96 (52%), Positives = 62/96 (64%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFV 183
KPPYSY LI AI +P K+LTL+GI I +PYYR WQNSIRHNLSLN F+
Sbjct: 3 KPPYSYAQLIVQAITMAPDKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLSLNRYFI 62
Query: 184 KIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRRKR 219
K+PR PGKG++W +DP +E +F +RR R
Sbjct: 63 KVPRSQEEPGKGSFWRIDPASESKLIEQAFRKRRPR 98
>d1d5va_ a.4.5.14 (A:) Adipocyte-transcription factor FREAC-11 (s12,
fkh-14) {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 161 bits (410), Expect = 2e-51
Identities = 66/93 (70%), Positives = 79/93 (84%)
Query: 122 IVKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDC 181
+VKPPYSYIALITMAI +P KK+TL+GI +FIM RFP+YRE WQNSIRHNLSLN+C
Sbjct: 2 LVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSLNEC 61
Query: 182 FVKIPREPGNPGKGNYWTLDPMAEDMFDNGSFL 214
FVK+PR+ PGKG+YWTLDP + +MF+NGSFL
Sbjct: 62 FVKVPRDDKKPGKGSYWTLDPDSYNMFENGSFL 94
>d2a07f1 a.4.5.14 (F:503-584) Forkhead box protein P2, FOXP2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 129 bits (327), Expect = 4e-39
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 13/95 (13%)
Query: 123 VKPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCF 182
V+PP++Y LI AI++S ++LTL+ I + F Y+R W+N++RHNLSL+ CF
Sbjct: 1 VRPPFTYATLIRQAIMESSDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLSLHKCF 60
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRRR 217
V++ KG WT+D + + +RR
Sbjct: 61 VRVEN-----VKGAVWTVDEVE--------YQKRR 82
>d1kq8a_ a.4.5.14 (A:) HFH-1 (HNF-3 forkhead homolog-1) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 75
Score = 126 bits (319), Expect = 6e-38
Identities = 44/75 (58%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 129 YIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKFPAWQNSIRHNLSLNDCFVKIPRE 188
YIALITMAI S +LTL+ I E++M +FP++R + W+NS+RHNLSLNDCFVK+ R+
Sbjct: 1 YIALITMAIRDSAGGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLSLNDCFVKVLRD 60
Query: 189 PGNP-GKGNYWTLDP 202
P P GK NYW L+P
Sbjct: 61 PSRPWGKDNYWMLNP 75
>d3bpya1 a.4.5.14 (A:93-177) Afx (Foxo4) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 125 bits (315), Expect = 3e-37
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 124 KPPYSYIALITMAILQSPHKKLTLSGICEFIMSRFPYYREKF-----PAWQNSIRHNLSL 178
SY LI+ AI +P K+LTL+ I E+++ PY+++K W+NSIRHNLSL
Sbjct: 5 WGNQSYAELISQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSL 64
Query: 179 NDCFVKIPREPGNPGKGNYWTLD 201
+ F+K+ E GK ++W L+
Sbjct: 65 HSKFIKVHNEA--TGKSSWWMLN 85
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS),
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 97
Score = 28.4 bits (63), Expect = 0.32
Identities = 3/43 (6%), Positives = 10/43 (23%)
Query: 60 DADINVESDDGDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTD 102
+ +NV + + + ++ A
Sbjct: 28 ERGMNVTVEIMERGLSAQLKYASAIGADFAVIFGERDLERGVV 70
>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia
coli [TaxId: 562]}
Length = 81
Score = 26.2 bits (57), Expect = 1.7
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 22 HHTGPRTSFDSPLDLR 37
T PLD+R
Sbjct: 66 SLNQRDTPLTLPLDIR 81
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 171
Score = 27.0 bits (59), Expect = 2.1
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 13/106 (12%)
Query: 10 GFHHSPHLLPQPHHTGPRTSFDSPLDLRGAPHPGDMCNLSSPSPSSEDDSDADINVESDD 69
G L H+ P + G P GD+ +L D A + +D
Sbjct: 63 GGAPGNFLSAGGHYHVPGHT--------GTPASGDLASLQVRG-----DGSAMLVTTTDA 109
Query: 70 GDEQGMSNVRRNIAEFHKHFSNCESDVNGCPTDGSISPGPEGDSDK 115
+ + + H N + + +PGP+ +
Sbjct: 110 FTMDDLLSGAKTAIIIHAGADNFANIPPERYVQVNGTPGPDETTLT 155
>d2fhzb1 d.243.1.2 (B:12-104) Colicin E5 {Escherichia coli [TaxId:
562]}
Length = 93
Score = 26.1 bits (57), Expect = 2.2
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 183 VKIPREPGNPGKGNYWTLDPMAEDMFDNGSFLRR--RKRYKRTPPDFLLRDPHAAAMASF 240
+KI ++ WT D + ++ NG+ ++ K+TPPD+L R+ A S
Sbjct: 1 LKIDQKIRGQMPERGWTEDDI-KNTVSNGATGTSFDKRSPKKTPPDYLGRNDPATVYGSP 59
>d2c34a1 b.1.26.1 (A:1-113) Inhibitor of cysteine peptidases, ICP
{Leishmania mexicana [TaxId: 5665]}
Length = 113
Score = 25.7 bits (56), Expect = 3.4
Identities = 10/38 (26%), Positives = 12/38 (31%)
Query: 189 PGNPGKGNYWTLDPMAEDMFDNGSFLRRRKRYKRTPPD 226
GNP G WT + L +Y TP
Sbjct: 27 KGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSS 64
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.434
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,165,252
Number of extensions: 55913
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 14
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)