BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy950
(407 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+
Sbjct: 126 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 185
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I K + +G NRQ +++ +LP+P + + + +YW D + ++ +K + I
Sbjct: 186 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 242
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
+ + DI F Q P+ NPC NGGC LC PV K Y+C C TG
Sbjct: 243 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 295
Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
+ K C E L+ + RT++R + LD P T + + + ++ + + +++D +
Sbjct: 296 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 354
Query: 277 ILFT 280
I +T
Sbjct: 355 IYWT 358
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 15/197 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P+ +YW D+G+ P+I ++ LDGS +V+ + P L +D +YW DAK D
Sbjct: 434 LDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 493
Query: 100 LIQKISYNG-GNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I+ ++ +G G R ++ +P+ G + VYW D R++ + K ++ + +
Sbjct: 494 KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQL 553
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
L GL+ + ++ +NPC NGGC LC P +C C G
Sbjct: 554 -PDLMGLKATNVHRVIG-----SNPCAEE-NGGCSHLCLYRPQGL-------RCACPIGF 599
Query: 219 PSASDPKKCTTMDEYLV 235
SD K C + +L+
Sbjct: 600 ELISDMKTCIVPEAFLL 616
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
+ P+ +YW D + I +S++DGS +V+ I+ P + +D ++YW D D
Sbjct: 348 YDPVEGYIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 406
Query: 100 LIQKISYNGGNRQI-IRRNLPNPMGIAVHK--SDVYWVD 135
I+ NG R+I I +L P I + +YW D
Sbjct: 407 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 445
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 14/244 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+
Sbjct: 134 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 193
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I K + +G NRQ +++ +LP+P + + + +YW D + ++ +K + I
Sbjct: 194 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 250
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
+ + DI F Q P+ NPC NGGC LC PV K Y+C C TG
Sbjct: 251 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 303
Query: 219 PSASDPKKCT-TMDEYLVFSTRTEIRALHLD-PTLTAVPFKTVSNLTNVVGVEFDYADDK 276
+ K C E L+ + RT++R + LD P T + + + ++ + + +++D +
Sbjct: 304 KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQ-LEDIRHAIAIDYDPVEGY 362
Query: 277 ILFT 280
I +T
Sbjct: 363 IYWT 366
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 15/189 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P+ +YW D+G+ P+I ++ LDGS +V+ + P L +D +YW DAK D
Sbjct: 442 LDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501
Query: 100 LIQKISYNG-GNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I+ ++ +G G R ++ +P+ G + VYW D R++ + K ++ + +
Sbjct: 502 KIEVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQL 561
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
L GL+ + ++ +NPC NGGC LC P +C C G
Sbjct: 562 -PDLMGLKATNVHRVIG-----SNPCAEE-NGGCSHLCLYRPQGL-------RCACPIGF 607
Query: 219 PSASDPKKC 227
SD K C
Sbjct: 608 ELISDMKTC 616
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
+ P+ +YW D + I +S++DGS +V+ I+ P + +D ++YW D D
Sbjct: 356 YDPVEGYIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD 414
Query: 100 LIQKISYNGGNRQI-IRRNLPNPMGIAVHK--SDVYWVD 135
I+ NG R+I I +L P I + +YW D
Sbjct: 415 RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTD 453
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW ++G P+I ++ +DGS+ T++V N + LTID +YW D +
Sbjct: 130 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 188
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
LI+ + G NR++I +LP+P G+ ++ +YW D + R++ +A+K + N T+ I+
Sbjct: 189 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 245
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
L + DI +F Q N C + NG C LC + PV + C C
Sbjct: 246 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 296
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
+D + C+ +L+FS ++ I + +D + + +L NV +++D D ++ +
Sbjct: 297 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 356
Query: 280 TQIR 283
R
Sbjct: 357 IDSR 360
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR 115
P+I ++ LDG++ + +G+S P L +D + ++W D+ L I+ +G NR ++
Sbjct: 456 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 515
Query: 116 -RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV 174
N+ P+G+ V ++ +YW+D+ + + K+ T T ++ ++ L DI +
Sbjct: 516 DSNILQPVGLTVFENWLYWIDKQQQMI---EKIDMTGREGRTKVQARIAQLSDIHAVKEL 572
Query: 175 NQPPDENNPCFRTGNGGCEQLCF 197
N +PC + NGGC +C
Sbjct: 573 NLQEYRQHPCAQD-NGGCSHICL 594
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+YW D I +++++GS +V G+ P + +D ++YW D + I+
Sbjct: 51 IYWTDIS-LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL 109
Query: 107 NGGNRQIIR-RNLPNPMGIAVHKSD--VYWVD 135
+G +RQ++ ++L +P +A+ ++ +YW +
Sbjct: 110 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTE 141
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS------MPRDLTIDMQTHDVYW 93
+ PL + LYWID Q I K+ DGS+ ++V + + P DL+ID+ + +YW
Sbjct: 347 YDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 405
Query: 94 VDAKLDLIQKISYNGGNRQIIRRNLPN-PMGIAVHKSDVYWVDRNLR 139
++I +G + ++ + + P + V+ Y NL+
Sbjct: 406 TCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQ 452
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 75 GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVH--KSDV 131
G+ L D+ + +YW D L I + NG ++ L P G+AV ++
Sbjct: 35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 94
Query: 132 YWVD 135
YW D
Sbjct: 95 YWAD 98
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW ++G P+I ++ +DGS+ T++V N + LTID +YW D +
Sbjct: 128 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 186
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
LI+ + G NR++I +LP+P G+ ++ +YW D + R++ +A+K + N T+ I+
Sbjct: 187 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 243
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
L + DI +F Q N C + NG C LC + PV + C C
Sbjct: 244 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 294
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
+D + C+ +L+FS ++ I + +D + + +L NV +++D D ++ +
Sbjct: 295 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 354
Query: 280 TQIR 283
R
Sbjct: 355 IDSR 358
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR 115
P+I ++ LDG++ + +G+S P L +D + ++W D+ L I+ +G NR ++
Sbjct: 454 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 513
Query: 116 -RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV 174
N+ P+G+ V ++ +YW+D+ + + K+ T T ++ ++ L DI +
Sbjct: 514 DSNILQPVGLTVFENWLYWIDKQQQMI---EKIDMTGREGRTKVQARIAQLSDIHAVKEL 570
Query: 175 NQPPDENNPCFRTGNGGCEQLCF 197
N +PC + NGGC +C
Sbjct: 571 NLQEYRQHPCAQD-NGGCSHICL 592
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+YW D I +++++GS +V G+ P + +D ++YW D + I+
Sbjct: 49 IYWTDIS-LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL 107
Query: 107 NGGNRQIIR-RNLPNPMGIAVHKSD--VYWVD 135
+G +RQ++ ++L +P +A+ ++ +YW +
Sbjct: 108 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTE 139
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS------MPRDLTIDMQTHDVYW 93
+ PL + LYWID Q I K+ DGS+ ++V + + P DL+ID+ + +YW
Sbjct: 345 YDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 403
Query: 94 VDAKLDLIQKISYNGGNRQIIRRNLPN-PMGIAVHKSDVYWVDRNLR 139
++I +G + ++ + + P I V+ Y NL+
Sbjct: 404 TCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQ 450
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 75 GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVH--KSDV 131
G+ L D+ + +YW D L I + NG ++ L P G+AV ++
Sbjct: 33 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 92
Query: 132 YWVD 135
YW D
Sbjct: 93 YWAD 96
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 121/244 (49%), Gaps = 13/244 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW ++G P+I ++ +DGS+ T++V N + LTID +YW D +
Sbjct: 135 LDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTN 193
Query: 100 LIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
LI+ + G NR++I +LP+P G+ ++ +YW D + R++ +A+K + N T+ I+
Sbjct: 194 LIESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQ 250
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
L + DI +F Q N C + NG C LC + PV + C C
Sbjct: 251 GHLDYVMDILVFHSSRQSG--WNEC-ASSNGHCSHLCLAVPVG------GFVCGCPAHYS 301
Query: 220 SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
+D + C+ +L+FS ++ I + +D + + +L NV +++D D ++ +
Sbjct: 302 LNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYW 361
Query: 280 TQIR 283
R
Sbjct: 362 IDSR 365
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR 115
P+I ++ LDG++ + +G+S P L +D + ++W D+ L I+ +G NR ++
Sbjct: 461 PKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE 520
Query: 116 -RNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIV 174
N+ P+G+ V ++ +YW+D+ + + K+ T T ++ ++ L DI +
Sbjct: 521 DSNILQPVGLTVFENWLYWIDKQQQMI---EKIDMTGREGRTKVQARIAQLSDIHAVKEL 577
Query: 175 NQPPDENNPCFRTGNGGCEQLCF 197
N +PC + NGGC +C
Sbjct: 578 NLQEYRQHPCAQD-NGGCSHICL 599
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+YW D I +++++GS +V G+ P + +D ++YW D + I+
Sbjct: 56 IYWTDIS-LKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKL 114
Query: 107 NGGNRQIIR-RNLPNPMGIAVHKSD--VYWVD 135
+G +RQ++ ++L +P +A+ ++ +YW +
Sbjct: 115 DGQHRQVLVWKDLDSPRALALDPAEGFMYWTE 146
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS------MPRDLTIDMQTHDVYW 93
+ PL + LYWID Q I K+ DGS+ ++V + + P DL+ID+ + +YW
Sbjct: 352 YDPLDKQLYWIDSRQ-NMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW 410
Query: 94 VDAKLDLIQKISYNGGNRQIIRRNLPN-PMGIAVHKSDVYWVDRNLR 139
++I +G + ++ + + P I V+ Y NL+
Sbjct: 411 TCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQ 457
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 75 GISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVH--KSDV 131
G+ L D+ + +YW D L I + NG ++ L P G+AV ++
Sbjct: 40 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNL 99
Query: 132 YWVD 135
YW D
Sbjct: 100 YWAD 103
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 98/201 (48%), Gaps = 11/201 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+
Sbjct: 126 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 185
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I K + +G NRQ +++ +LP+P + + + +YW D + ++ +K + I
Sbjct: 186 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 242
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
+ + DI F Q P+ NPC NGGC LC PV K Y+C C TG
Sbjct: 243 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 295
Query: 219 PSASDPKKCTTMDEYLVFSTR 239
+ K C L+ R
Sbjct: 296 KLLENGKTCKDGATELLLLAR 316
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 11/189 (5%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+
Sbjct: 129 LDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I K + +G NRQ +++ +LP+P + + + +YW D + ++ +K + I
Sbjct: 189 FIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGL---REI 245
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218
+ + DI F Q P+ NPC NGGC LC PV K Y+C C TG
Sbjct: 246 HSDIFSPMDIHAFSQQRQ-PNATNPC-GIDNGGCSHLCLMSPV-----KPFYQCACPTGV 298
Query: 219 PSASDPKKC 227
+ K C
Sbjct: 299 KLLENGKTC 307
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 129 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 245
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 246 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 303
Query: 217 GTPSASDPKKCTT 229
G A D + C T
Sbjct: 304 GMLLARDMRSCLT 316
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 47 LYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102
+YW D Q I + LD S + +++S I P L +D ++YW D+ L +
Sbjct: 44 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102
Query: 103 KISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVD 135
G R+ + R N P I V +YW D
Sbjct: 103 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 138
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 639
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 640 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 697
Query: 217 GTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPT 250
G A D + C T E V + T L + T
Sbjct: 698 GMLLARDMRSCLTEAEAAVATQETSTVRLKVSST 731
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 8/113 (7%)
Query: 47 LYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102
+YW D Q I + LD S + +++S I P L +D ++YW D+ L +
Sbjct: 438 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496
Query: 103 KISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNI 152
G R+ + R N P I V +YW D K L +I
Sbjct: 497 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 327
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 328 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 385
Query: 217 GTPSASDPKKCTT 229
G A D + C T
Sbjct: 386 GMLLARDMRSCLT 398
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 47 LYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102
+YW D Q I + LD S + +++S I P L +D ++YW D+ L +
Sbjct: 126 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184
Query: 103 KISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVD 135
G R+ + R N P I V +YW D
Sbjct: 185 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 220
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 102 bits (255), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 251 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 310
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 311 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 367
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 368 AENLLSPEDMVLFHNLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 425
Query: 217 GTPSASDPKKCTT 229
G A D + C T
Sbjct: 426 GMLLARDMRSCLT 438
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 47 LYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102
+YW D Q I + LD S + +++S I P L +D ++YW D+ L +
Sbjct: 166 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 224
Query: 103 KISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVD 135
G R+ + R N P I V +YW D
Sbjct: 225 VADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTD 260
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 101 bits (252), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 99/199 (49%), Gaps = 10/199 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 102 QKISYNGGNRQII---RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 621
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 622 AENLLSPEDMVLFHQLTQPRGV-NWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 679
Query: 217 GTPSASDPKKCTTMDEYLV 235
G A D + C T E V
Sbjct: 680 GMLLARDMRSCLTEAEAAV 698
Score = 34.7 bits (78), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 8/113 (7%)
Query: 47 LYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102
+YW D Q I + LD S + +++S I P L +D ++YW D+ L +
Sbjct: 420 IYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478
Query: 103 KISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNI 152
G R+ + R P I V +YW D K L +I
Sbjct: 479 VADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 531
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P+ +YW D+G PRI S +DGS I + P LTID +YWVDAK
Sbjct: 166 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
+I++ + +G +R+ +I + LP+P I V + +YW D + +++ A+K N + I
Sbjct: 226 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---I 282
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTG--NGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
R L DI QP +N R G NGGC LC P + +Y C C T
Sbjct: 283 RNKLHFPMDIHTLHPQRQPAGKN----RCGDNNGGCTHLC------LPSGQ-NYTCACPT 331
Query: 217 G 217
G
Sbjct: 332 G 332
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
F L++W D RI ++ L+GS +VS G+ P L +D +YW D+
Sbjct: 80 FHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS 138
Query: 100 LIQKISYNGGNRQIIR-RNLPNPMGIAVH--KSDVYWVD 135
I+ + +G +R+++ ++L P IA+H + +YW D
Sbjct: 139 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 177
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 88/181 (48%), Gaps = 17/181 (9%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
P+ +YW D+G PRI S +DGS I + P LTID +YWVDAK
Sbjct: 209 LHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 268
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
+I++ + +G +R+ +I + LP+P I V + +YW D + +++ A+K N + I
Sbjct: 269 VIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---I 325
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTG--NGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
R L DI QP +N R G NGGC LC P + +Y C C T
Sbjct: 326 RNKLHFPMDIHTLHPQRQPAGKN----RCGDNNGGCTHLC------LPSGQ-NYTCACPT 374
Query: 217 G 217
G
Sbjct: 375 G 375
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
F L++W D RI ++ L+GS +VS G+ P L +D +YW D+
Sbjct: 123 FHHRRELVFWSDV-TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS 181
Query: 100 LIQKISYNGGNRQIIR-RNLPNPMGIAVH--KSDVYWVD 135
I+ + +G +R+++ ++L P IA+H + +YW D
Sbjct: 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTD 220
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
F + +++YW D + P IG++ L G + T+I+ + P + +D ++W D++LD
Sbjct: 43 FDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101
Query: 100 LIQKISYNGGNRQII-RRNLPNPMGIAVH--KSDVYWVDRN 137
I+ +G R+++ L NP GI + ++YW D N
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWN 142
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 43 LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD--L 100
L R ++W D Q RI + +DG++ + G+ PR + D ++YW D D
Sbjct: 89 LGRTIFWTD-SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPK 147
Query: 101 IQKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVD 135
I+ +G NR+I+ ++ LPN + S + WVD
Sbjct: 148 IETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVD 185
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 42 PLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
P+ LYW D+ + P+I S++DG+ + + + +P LT D + + WVDA
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVD 135
+ ++ R+ + L P + + ++Y+ D
Sbjct: 191 AECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTD 225
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 82 LTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVHK--SDVYWVDRNL 138
L D VYW D I + S +GG IIR++L +P GIA+ ++W D L
Sbjct: 41 LAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQL 100
Query: 139 RTVYKA 144
+ A
Sbjct: 101 DRIEVA 106
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTE 241
N C GC+ C + Y C CA G D K+C D+ +E
Sbjct: 3 NECHPERTDGCQHFCLP-------GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 55
Query: 242 IRALHLDPTLTAVPFKTVSNLTNVVGVEF 270
RA P L +P++ LTN G +F
Sbjct: 56 KRA----PDLQDLPWQV--KLTNSEGKDF 78
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTE 241
N C GC+ C + Y C CA G D K+C D+ +E
Sbjct: 44 NECHPERTDGCQHFCLP-------GQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSE 96
Query: 242 IRALHLDPTLTAVPFKTVSNLTNVVGVEF 270
RA P L +P++ LTN G +F
Sbjct: 97 KRA----PDLQDLPWQV--KLTNSEGKDF 119
>pdb|1KIG|L Chain L, Bovine Factor Xa
Length = 51
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NGGC+Q C + + +C CA G D K C + + +
Sbjct: 5 NGGCDQFC-------REERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>pdb|1RWI|B Chain B, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWI|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
pdb|1RWL|A Chain A, Extracellular Domain Of Mycobacterium Tuberculosis Pknd
Length = 270
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+Y G Y R+ K + T + NG+ P+ L +D VY D ++ +
Sbjct: 37 VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAA- 94
Query: 107 NGGNRQIIR--RNLPNPMGIAVH-KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLS 163
G N Q + L P G+AV + VY DR V K + + T LP +
Sbjct: 95 -GSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP------FT 147
Query: 164 GLRD 167
GL D
Sbjct: 148 GLND 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,127,394
Number of Sequences: 62578
Number of extensions: 513378
Number of successful extensions: 1103
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 52
length of query: 407
length of database: 14,973,337
effective HSP length: 101
effective length of query: 306
effective length of database: 8,652,959
effective search space: 2647805454
effective search space used: 2647805454
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)