Query psy950
Match_columns 407
No_of_seqs 231 out of 1793
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:57:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1215|consensus 100.0 2.7E-34 5.9E-39 313.2 29.5 351 19-397 509-875 (877)
2 KOG1214|consensus 100.0 5.1E-34 1.1E-38 285.7 16.0 193 14-218 1092-1285(1289)
3 KOG1215|consensus 100.0 2.2E-29 4.7E-34 274.8 27.8 345 4-390 206-565 (877)
4 KOG1214|consensus 99.9 1.9E-25 4.2E-30 224.4 13.6 149 232-387 991-1151(1289)
5 PLN02919 haloacid dehalogenase 99.8 2.8E-15 6.1E-20 165.3 34.6 281 27-403 562-916 (1057)
6 PF08450 SGL: SMP-30/Gluconola 99.5 1.6E-11 3.5E-16 114.7 27.5 223 35-363 2-244 (246)
7 PLN02919 haloacid dehalogenase 99.4 9.4E-11 2E-15 129.8 30.8 218 32-337 623-890 (1057)
8 PF10282 Lactonase: Lactonase, 99.3 1.8E-08 3.9E-13 99.0 32.5 257 10-367 14-314 (345)
9 PF00058 Ldl_recept_b: Low-den 99.3 2.1E-11 4.6E-16 81.1 6.8 42 45-86 1-42 (42)
10 PF14670 FXa_inhibition: Coagu 99.2 1.8E-11 3.9E-16 77.9 2.6 36 184-227 1-36 (36)
11 PRK11028 6-phosphogluconolacto 99.1 3.3E-07 7.2E-12 89.3 31.7 264 32-352 34-327 (330)
12 PF08450 SGL: SMP-30/Gluconola 99.0 2E-08 4.4E-13 93.7 17.4 115 31-148 84-214 (246)
13 PF10282 Lactonase: Lactonase, 99.0 1.1E-06 2.4E-11 86.4 29.7 210 31-336 85-323 (345)
14 COG3391 Uncharacterized conser 98.9 1.4E-06 3.1E-11 86.8 28.5 224 33-364 31-272 (381)
15 PRK11028 6-phosphogluconolacto 98.9 5.4E-06 1.2E-10 80.8 31.2 262 45-366 2-295 (330)
16 PF00058 Ldl_recept_b: Low-den 98.7 4E-08 8.6E-13 65.3 6.4 40 89-128 1-42 (42)
17 TIGR03866 PQQ_ABC_repeats PQQ- 98.7 0.00019 4E-09 67.8 33.8 258 32-354 30-300 (300)
18 KOG4659|consensus 98.7 1.3E-05 2.9E-10 86.2 27.1 308 9-366 283-682 (1899)
19 PF06977 SdiA-regulated: SdiA- 98.7 2.3E-05 5E-10 72.9 25.5 192 77-363 22-239 (248)
20 smart00135 LY Low-density lipo 98.7 6.9E-08 1.5E-12 64.2 6.3 42 26-68 2-43 (43)
21 COG3391 Uncharacterized conser 98.6 1.5E-05 3.3E-10 79.4 25.2 231 32-364 73-318 (381)
22 TIGR02658 TTQ_MADH_Hv methylam 98.6 8.9E-05 1.9E-09 72.5 29.1 254 44-339 12-334 (352)
23 TIGR02604 Piru_Ver_Nterm putat 98.6 3.3E-05 7.1E-10 76.6 26.2 136 27-171 6-192 (367)
24 COG2706 3-carboxymuconate cycl 98.6 0.00032 6.9E-09 66.9 30.3 293 45-387 3-331 (346)
25 smart00135 LY Low-density lipo 98.5 2.3E-07 5.1E-12 61.6 5.8 42 70-111 2-43 (43)
26 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 0.0014 3.1E-08 61.7 34.2 275 45-391 1-292 (300)
27 PF07995 GSDH: Glucose / Sorbo 98.4 9E-05 1.9E-09 72.4 23.7 260 32-331 1-331 (331)
28 COG2706 3-carboxymuconate cycl 98.2 0.0038 8.2E-08 59.7 28.0 266 17-338 24-324 (346)
29 COG3386 Gluconolactonase [Carb 98.1 0.0001 2.3E-09 70.9 16.4 123 15-139 144-278 (307)
30 KOG4659|consensus 98.1 8.1E-05 1.7E-09 80.5 16.1 111 32-148 474-623 (1899)
31 TIGR02604 Piru_Ver_Nterm putat 98.0 0.00018 3.9E-09 71.4 15.7 130 10-145 48-211 (367)
32 PF03088 Str_synth: Strictosid 97.9 6.5E-05 1.4E-09 58.3 8.6 72 37-109 2-89 (89)
33 COG3386 Gluconolactonase [Carb 97.9 0.00039 8.4E-09 67.0 14.9 114 33-148 111-244 (307)
34 PF07995 GSDH: Glucose / Sorbo 97.9 0.0038 8.2E-08 61.0 21.7 244 76-364 1-324 (331)
35 PF12662 cEGF: Complement Clr- 97.7 2.1E-05 4.5E-10 45.0 2.1 22 209-230 1-22 (24)
36 COG3204 Uncharacterized protei 97.6 0.021 4.6E-07 53.6 20.8 190 78-363 87-301 (316)
37 PF06977 SdiA-regulated: SdiA- 97.5 0.0016 3.5E-08 60.7 13.0 101 35-135 120-239 (248)
38 PF03022 MRJP: Major royal jel 97.5 0.024 5.2E-07 54.2 20.4 88 273-363 141-253 (287)
39 KOG1520|consensus 97.4 0.0012 2.6E-08 64.0 10.5 114 32-148 114-250 (376)
40 PF07645 EGF_CA: Calcium-bindi 97.4 0.00017 3.6E-09 47.8 3.1 39 181-227 2-42 (42)
41 PF03088 Str_synth: Strictosid 97.2 0.003 6.5E-08 49.1 8.5 69 80-148 1-88 (89)
42 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.3 6.6E-06 47.9 26.6 95 270-366 201-321 (352)
43 COG4257 Vgb Streptogramin lyas 97.1 0.23 5E-06 46.4 21.9 246 76-391 61-317 (353)
44 TIGR03606 non_repeat_PQQ dehyd 97.1 0.045 9.8E-07 55.4 18.4 147 23-171 20-238 (454)
45 PF02239 Cytochrom_D1: Cytochr 97.1 0.36 7.8E-06 47.9 26.9 317 14-350 16-363 (369)
46 PF02239 Cytochrom_D1: Cytochr 97.1 0.38 8.1E-06 47.8 28.2 102 45-148 6-109 (369)
47 KOG1520|consensus 96.9 0.0055 1.2E-07 59.5 9.7 128 264-397 116-272 (376)
48 PF01436 NHL: NHL repeat; Int 96.8 0.003 6.6E-08 37.7 4.3 26 77-103 2-27 (28)
49 cd01475 vWA_Matrilin VWA_Matri 96.7 0.0013 2.8E-08 60.5 3.0 39 180-226 186-224 (224)
50 COG4257 Vgb Streptogramin lyas 96.6 0.67 1.5E-05 43.4 22.4 261 30-366 59-338 (353)
51 KOG4499|consensus 96.4 0.047 1E-06 49.7 11.0 89 59-148 141-242 (310)
52 PRK05137 tolB translocation pr 96.1 1.9 4.1E-05 43.7 28.3 219 55-338 181-415 (435)
53 PF03022 MRJP: Major royal jel 96.1 0.093 2E-06 50.2 12.2 99 35-136 130-254 (287)
54 KOG4499|consensus 96.0 0.21 4.5E-06 45.6 13.2 111 22-134 147-272 (310)
55 PF01436 NHL: NHL repeat; Int 96.0 0.018 3.9E-07 34.4 4.4 27 32-60 1-27 (28)
56 PRK04792 tolB translocation pr 96.0 2.3 4.9E-05 43.4 26.2 104 44-148 183-295 (448)
57 TIGR03606 non_repeat_PQQ dehyd 95.9 0.97 2.1E-05 45.9 19.2 76 71-147 24-124 (454)
58 COG3204 Uncharacterized protei 95.8 0.12 2.6E-06 48.6 11.3 100 35-134 183-300 (316)
59 PF12947 EGF_3: EGF domain; I 95.7 0.008 1.7E-07 38.2 2.1 34 184-227 1-36 (36)
60 PRK04043 tolB translocation pr 95.6 3 6.5E-05 42.2 27.0 226 44-338 155-403 (419)
61 COG2133 Glucose/sorbosone dehy 95.3 0.2 4.4E-06 49.7 11.5 123 25-147 231-397 (399)
62 PRK02888 nitrous-oxide reducta 95.3 0.76 1.6E-05 48.1 16.0 62 301-364 318-393 (635)
63 PF06433 Me-amine-dh_H: Methyl 95.2 3.3 7.2E-05 40.2 23.2 264 45-375 3-330 (342)
64 TIGR03032 conserved hypothetic 95.1 1.3 2.8E-05 42.5 15.5 102 74-178 200-320 (335)
65 PRK02889 tolB translocation pr 94.9 4.9 0.00011 40.6 26.7 104 44-148 164-273 (427)
66 PF01731 Arylesterase: Arylest 94.8 0.1 2.2E-06 40.2 6.1 43 63-106 41-83 (86)
67 smart00179 EGF_CA Calcium-bind 94.7 0.039 8.4E-07 35.2 3.2 34 182-227 3-38 (39)
68 PRK03629 tolB translocation pr 94.7 5.6 0.00012 40.3 28.8 104 44-148 164-276 (429)
69 PRK04043 tolB translocation pr 94.7 2.6 5.7E-05 42.6 17.8 133 12-148 169-310 (419)
70 COG4946 Uncharacterized protei 94.5 5.9 0.00013 39.9 23.1 84 275-362 372-461 (668)
71 PRK00178 tolB translocation pr 94.2 4.3 9.3E-05 40.9 18.4 135 12-148 179-320 (430)
72 PRK03629 tolB translocation pr 94.2 4.5 9.7E-05 41.0 18.3 135 12-148 179-320 (429)
73 PRK04922 tolB translocation pr 94.1 7.6 0.00016 39.3 26.3 218 56-338 184-414 (433)
74 PRK04792 tolB translocation pr 94.0 4.3 9.3E-05 41.4 17.9 135 12-148 198-339 (448)
75 PRK05137 tolB translocation pr 94.0 7.8 0.00017 39.2 24.2 117 267-387 294-420 (435)
76 PF02333 Phytase: Phytase; In 93.9 2.2 4.7E-05 42.3 14.6 119 29-148 152-291 (381)
77 smart00181 EGF Epidermal growt 93.7 0.074 1.6E-06 33.1 2.8 24 190-220 6-30 (35)
78 TIGR02800 propeller_TolB tol-p 93.7 8.3 0.00018 38.4 26.1 104 44-148 156-267 (417)
79 PRK02888 nitrous-oxide reducta 93.3 2.8 6E-05 44.1 14.9 70 78-147 322-404 (635)
80 PRK04922 tolB translocation pr 93.2 5.8 0.00013 40.1 17.3 133 14-148 186-325 (433)
81 PF09064 Tme5_EGF_like: Thromb 92.9 0.074 1.6E-06 32.9 1.7 27 189-223 5-31 (34)
82 TIGR02276 beta_rpt_yvtn 40-res 92.7 0.58 1.3E-05 30.1 6.2 40 87-126 2-41 (42)
83 PRK01742 tolB translocation pr 92.7 10 0.00022 38.3 18.2 134 12-147 184-324 (429)
84 PRK01029 tolB translocation pr 91.4 18 0.00039 36.7 19.7 113 35-148 283-404 (428)
85 TIGR03118 PEPCTERM_chp_1 conse 91.3 6.6 0.00014 37.6 13.5 108 36-148 141-280 (336)
86 PRK02889 tolB translocation pr 91.2 16 0.00035 36.8 17.6 130 16-147 180-316 (427)
87 TIGR02276 beta_rpt_yvtn 40-res 90.5 0.8 1.7E-05 29.4 5.0 39 273-312 2-42 (42)
88 TIGR02800 propeller_TolB tol-p 90.0 22 0.00047 35.4 18.6 113 34-147 235-354 (417)
89 PF13449 Phytase-like: Esteras 89.8 8.1 0.00018 37.6 13.5 62 34-96 86-166 (326)
90 PRK00178 tolB translocation pr 88.6 29 0.00062 34.9 27.1 104 44-148 163-276 (430)
91 cd00054 EGF_CA Calcium-binding 88.6 0.58 1.2E-05 29.1 3.0 20 193-219 14-33 (38)
92 TIGR03118 PEPCTERM_chp_1 conse 88.3 18 0.00038 34.7 13.8 118 24-145 14-168 (336)
93 PF02333 Phytase: Phytase; In 87.2 8.1 0.00018 38.3 11.4 76 33-110 208-293 (381)
94 cd00053 EGF Epidermal growth f 86.7 0.77 1.7E-05 28.0 2.7 19 194-219 12-30 (36)
95 cd00200 WD40 WD40 domain, foun 86.6 23 0.0005 31.6 32.5 261 33-362 10-279 (289)
96 PF01731 Arylesterase: Arylest 86.3 2.3 4.9E-05 32.8 5.6 42 20-63 42-83 (86)
97 COG2133 Glucose/sorbosone dehy 85.8 1.8 3.9E-05 43.1 6.1 66 34-101 178-263 (399)
98 PF12661 hEGF: Human growth fa 85.3 0.54 1.2E-05 22.7 1.1 9 211-219 1-9 (13)
99 COG4946 Uncharacterized protei 85.2 29 0.00064 35.1 13.9 108 27-136 396-508 (668)
100 PF00008 EGF: EGF-like domain 84.8 0.81 1.8E-05 28.1 2.1 27 181-219 3-29 (32)
101 PRK01742 tolB translocation pr 84.4 49 0.0011 33.4 25.1 103 45-148 170-281 (429)
102 PF05787 DUF839: Bacterial pro 83.2 19 0.00041 37.6 12.5 64 31-95 348-453 (524)
103 TIGR03032 conserved hypothetic 78.3 68 0.0015 31.0 18.6 56 301-363 201-258 (335)
104 PF05096 Glu_cyclase_2: Glutam 77.8 63 0.0014 30.4 22.8 70 78-148 46-119 (264)
105 PF00930 DPPIV_N: Dipeptidyl p 77.6 23 0.00049 34.7 10.6 96 32-129 234-338 (353)
106 PF05096 Glu_cyclase_2: Glutam 75.4 73 0.0016 30.0 15.3 109 35-147 47-157 (264)
107 KOG0273|consensus 72.1 48 0.001 33.5 10.9 93 264-359 278-374 (524)
108 PF13449 Phytase-like: Esteras 70.9 21 0.00046 34.6 8.4 80 33-114 20-127 (326)
109 KOG0315|consensus 66.9 1.1E+02 0.0024 28.6 13.1 122 233-359 54-182 (311)
110 PF05787 DUF839: Bacterial pro 66.1 50 0.0011 34.5 10.3 56 44-99 295-372 (524)
111 KOG1219|consensus 62.1 4.9 0.00011 47.9 2.1 29 182-219 3865-3895(4289)
112 PF06433 Me-amine-dh_H: Methyl 61.9 1.6E+02 0.0036 28.8 12.8 107 39-148 190-321 (342)
113 PRK01029 tolB translocation pr 60.1 2E+02 0.0043 29.1 25.9 133 13-147 166-313 (428)
114 KOG0310|consensus 59.7 1.8E+02 0.0039 29.6 12.2 131 267-399 115-266 (487)
115 COG0823 TolB Periplasmic compo 59.4 2E+02 0.0043 29.2 12.9 88 56-148 218-315 (425)
116 KOG4649|consensus 54.0 1.8E+02 0.0039 27.5 10.4 60 26-99 24-83 (354)
117 COG3211 PhoX Predicted phospha 53.1 1.7E+02 0.0038 30.6 11.2 24 30-53 414-437 (616)
118 PF05694 SBP56: 56kDa selenium 52.7 41 0.0009 34.0 6.6 60 265-325 314-395 (461)
119 PHA02887 EGF-like protein; Pro 52.0 11 0.00025 30.4 2.1 17 208-228 106-122 (126)
120 KOG4328|consensus 49.9 2.6E+02 0.0056 28.4 11.4 144 262-407 186-359 (498)
121 COG3823 Glutamine cyclotransfe 49.7 1.1E+02 0.0023 28.0 8.0 68 40-108 181-260 (262)
122 PF05694 SBP56: 56kDa selenium 47.3 95 0.0021 31.5 8.1 61 35-96 314-393 (461)
123 KOG4289|consensus 47.1 14 0.0003 42.3 2.5 18 207-228 1736-1753(2531)
124 KOG1219|consensus 46.3 17 0.00036 43.9 3.0 16 209-228 3923-3938(4289)
125 PF14583 Pectate_lyase22: Olig 46.1 1.1E+02 0.0025 30.4 8.5 70 45-115 49-118 (386)
126 TIGR03075 PQQ_enz_alc_DH PQQ-d 45.7 1.4E+02 0.003 31.2 9.7 98 37-144 238-340 (527)
127 COG3823 Glutamine cyclotransfe 44.5 2.5E+02 0.0055 25.7 16.8 66 80-148 49-120 (262)
128 PF06739 SBBP: Beta-propeller 43.7 20 0.00044 22.8 2.0 19 77-96 13-31 (38)
129 cd00216 PQQ_DH Dehydrogenases 42.1 4E+02 0.0087 27.3 14.0 59 36-95 257-327 (488)
130 PHA03099 epidermal growth fact 41.4 21 0.00047 29.4 2.2 17 208-228 65-81 (139)
131 PF00954 S_locus_glycop: S-loc 39.4 1.9E+02 0.0042 22.8 8.3 11 209-219 97-107 (110)
132 cd00200 WD40 WD40 domain, foun 39.3 2.6E+02 0.0057 24.4 29.7 108 36-146 55-164 (289)
133 COG4247 Phy 3-phytase (myo-ino 39.2 3.4E+02 0.0073 25.6 10.0 63 301-364 151-224 (364)
134 PLN00181 protein SPA1-RELATED; 36.3 6.1E+02 0.013 27.8 13.4 106 255-362 525-635 (793)
135 KOG1407|consensus 34.6 4E+02 0.0088 25.2 14.2 114 238-359 85-204 (313)
136 KOG4227|consensus 33.8 2.7E+02 0.0058 27.8 8.7 71 262-337 105-181 (609)
137 PF05345 He_PIG: Putative Ig d 33.0 37 0.00081 22.9 2.1 21 343-363 9-29 (49)
138 COG5276 Uncharacterized conser 30.1 5.2E+02 0.011 25.0 15.0 108 43-159 95-208 (370)
139 PF14339 DUF4394: Domain of un 29.3 4.6E+02 0.01 24.3 10.8 63 261-325 25-95 (236)
140 PF14251 DUF4346: Domain of un 28.9 1.9E+02 0.0041 23.6 5.7 66 35-111 9-74 (119)
141 KOG1539|consensus 28.5 2.6E+02 0.0055 30.7 8.1 75 33-110 449-526 (910)
142 COG0823 TolB Periplasmic compo 28.1 5.4E+02 0.012 26.1 10.3 95 18-114 224-321 (425)
143 PF01826 TIL: Trypsin Inhibito 28.0 28 0.00061 23.9 0.8 18 211-229 34-51 (55)
144 KOG0918|consensus 27.3 4.2E+02 0.0091 26.7 8.8 93 36-136 315-408 (476)
145 KOG0973|consensus 24.8 6.4E+02 0.014 28.3 10.5 121 265-395 132-257 (942)
146 PF08309 LVIVD: LVIVD repeat; 24.4 2.1E+02 0.0046 18.6 5.5 28 120-148 3-30 (42)
147 KOG1446|consensus 24.1 6.5E+02 0.014 24.2 18.1 136 3-148 118-263 (311)
148 PF08290 Hep_core_N: Hepatitis 23.9 41 0.00088 19.6 0.8 10 210-219 10-19 (27)
149 PF13360 PQQ_2: PQQ-like domai 23.7 5.1E+02 0.011 22.8 12.7 58 88-148 173-231 (238)
150 PF14251 DUF4346: Domain of un 23.7 1.1E+02 0.0024 24.9 3.5 50 307-364 10-59 (119)
151 KOG2110|consensus 23.4 7.4E+02 0.016 24.6 9.9 99 233-335 143-248 (391)
152 COG5276 Uncharacterized conser 23.4 6.9E+02 0.015 24.2 12.0 116 25-142 204-324 (370)
153 TIGR01492 CPW_WPC Plasmodium f 23.2 42 0.00091 23.9 1.0 25 209-233 5-29 (62)
154 PF14759 Reductase_C: Reductas 23.1 2E+02 0.0043 21.7 4.8 27 48-75 2-28 (85)
155 PF13360 PQQ_2: PQQ-like domai 22.8 5.3E+02 0.011 22.7 12.8 97 44-148 36-141 (238)
156 KOG0266|consensus 22.2 8.3E+02 0.018 24.7 14.3 119 237-360 222-350 (456)
157 KOG0650|consensus 22.1 2.5E+02 0.0054 29.6 6.4 69 263-337 567-639 (733)
158 KOG4260|consensus 21.8 41 0.00089 31.6 0.8 34 180-221 235-270 (350)
159 KOG4328|consensus 21.0 5.2E+02 0.011 26.4 8.2 104 264-370 236-349 (498)
160 KOG0319|consensus 21.0 1.1E+03 0.024 25.7 11.5 112 239-355 39-158 (775)
161 KOG4649|consensus 20.2 2E+02 0.0043 27.2 4.9 52 78-139 32-83 (354)
No 1
>KOG1215|consensus
Probab=100.00 E-value=2.7e-34 Score=313.23 Aligned_cols=351 Identities=26% Similarity=0.423 Sum_probs=286.9
Q ss_pred ecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC
Q psy950 19 RLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98 (407)
Q Consensus 19 ~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~ 98 (407)
++|..+.+++...++.|+++++||..|+|||+||+..++|+|+.|||+.+++++..++.+|+||++|...+++||+|...
T Consensus 509 ~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~~~~~~yw~d~~~ 588 (877)
T KOG1215|consen 509 LDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTNGILWPNGLTIDYETDRLYWADAKL 588 (877)
T ss_pred ccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeCCccCCCcceEEeecceeEEEcccC
Confidence 78888999999999999999999999999999999767999999999999999999899999999999999999999999
Q ss_pred C-eEEEEecCCCeEE-EEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEe-eecC
Q psy950 99 D-LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIF-DIVN 175 (407)
Q Consensus 99 ~-~I~~~~~dG~~~~-~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~-~~~~ 175 (407)
. .|++++++|.+++ .....+.||++++++++++||+||....+.+..+.. +.. . ..+..+...|..+.++ +...
T Consensus 589 ~~~i~~~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~~~~ 665 (877)
T KOG1215|consen 589 DYTIESANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHK-GSD-S-RTSRSNLAQPLDIILVHHSSS 665 (877)
T ss_pred CcceeeeecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeeccc-CCc-c-eeeecccCcccceEEEecccc
Confidence 9 8999999999997 334789999999999999999999999999888886 322 2 3455677888888888 4445
Q ss_pred CCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeee
Q psy950 176 QPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVP 255 (407)
Q Consensus 176 qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~ 255 (407)
||. +.|+|.. +|++|+|+|++.|.. . +|+||.|+.|..++++|..+..+++++....+..+..+.......
T Consensus 666 ~~~-~~n~C~~-~n~~c~~KOG~~p~~------~-~c~c~~~~~l~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (877)
T KOG1215|consen 666 RPT-GVNPCES-SNGGCSQLCLPRPQG------S-TCACPEGYRLSPDGKSCSSPEGYLLITSRTGIPCISLDSELSPDQ 736 (877)
T ss_pred CCC-CCCcccc-cCCCCCeeeecCCCC------C-eeeCCCCCeecCCCCeecCcccccccccccccceeecCcccCCCc
Confidence 554 8999998 689999999999885 3 999999999999999999989999999999999998876533221
Q ss_pred eEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc--cc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEE
Q psy950 256 FKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAW 331 (407)
Q Consensus 256 ~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~--~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v 331 (407)
..+.. +...+..+|++... ....+...+.... +. ... .++++|+||..+.|||+.... ..|.+
T Consensus 737 ~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~-~~~~~ 803 (877)
T KOG1215|consen 737 PLEDG----------DTIDRLEYWTDVRV-GVAAVSSQNCAPGYDLVGEGEP-PPEGSAVDEAEDTLYWTCSAT-SFIEV 803 (877)
T ss_pred ccCCC----------cccccceecccccc-eeeEEEecCCCCccccccccCC-CCCCceeehhhcceEEEeecc-cEEEE
Confidence 11111 67788999988776 5444444433221 12 444 899999999999999999999 78888
Q ss_pred EECCCCc--------c-cccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceee
Q psy950 332 IPTTNPS--------S-ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKI 397 (407)
Q Consensus 332 ~~~~~~~--------r-l~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~ 397 (407)
..+++.. + ...+...|+.+.++|....+||++|... +.+..+.++++....++......+..+
T Consensus 804 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (877)
T KOG1215|consen 804 SGLDGERKCRRRPEGVVDFDNPVPPRTTGVEPEKSLLFWTNWEPG---PKIPRSALDGSERLVLFKSLLSCPNAL 875 (877)
T ss_pred EEEeeecccccccccccccCCCCCCcceeeccccceeccCCcccc---ceeeecccccccccceeccCCCCccCC
Confidence 8777641 1 2357789999999999999999999333 445567777777777777766665543
No 2
>KOG1214|consensus
Probab=100.00 E-value=5.1e-34 Score=285.65 Aligned_cols=193 Identities=26% Similarity=0.423 Sum_probs=171.6
Q ss_pred EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950 14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY 92 (407)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lY 92 (407)
|.++.++|+.+++|+..+|-+|++|++|+.+|.||||||.. +|+|++++|||+|+.+|+.+++..|+||++|+..+.|.
T Consensus 1092 IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~DigLPNGLtfdpfs~~LC 1171 (1289)
T KOG1214|consen 1092 IEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTDIGLPNGLTFDPFSKLLC 1171 (1289)
T ss_pred hheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecccCCCCCceeCcccceee
Confidence 55799999999999999999999999999999999999974 79999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEee
Q psy950 93 WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFD 172 (407)
Q Consensus 93 w~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~ 172 (407)
|+|+++++.+.+..+|..|+++...+.+||+|+-+++++|||||..++|..+++.. ++..+ ..+..+-...+||+..-
T Consensus 1172 WvDAGt~rleC~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~-~~~td-~~~p~~~s~lyGItav~ 1249 (1289)
T KOG1214|consen 1172 WVDAGTKRLECTLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWKRNGVVSVNKHS-GQFTD-EYLPEQRSHLYGITAVY 1249 (1289)
T ss_pred EEecCCcceeEecCCCCcchhhhhcccCceeeeeccccceeeccccCceEEeeccc-ccccc-ccccccccceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999987 32222 23334445688987664
Q ss_pred ecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCc
Q psy950 173 IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGT 218 (407)
Q Consensus 173 ~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~ 218 (407)
.++..+++||+. +||||+|||++.-. ...|.||...
T Consensus 1250 --~~Cp~gstpCSe-dNGGCqHLCLpgqn-------gavcecpdnv 1285 (1289)
T KOG1214|consen 1250 --PYCPTGSTPCSE-DNGGCQHLCLPGQN-------GAVCECPDNV 1285 (1289)
T ss_pred --ccCCCCCCcccc-cCCcceeecccCcC-------CccccCCccc
Confidence 556668999999 99999999996543 5899998754
No 3
>KOG1215|consensus
Probab=99.97 E-value=2.2e-29 Score=274.77 Aligned_cols=345 Identities=20% Similarity=0.329 Sum_probs=266.8
Q ss_pred CCCccEEEEE----EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCC-CCeEEEEeCCCCCeEEEEeCCCCC
Q psy950 4 TLALASLIWA----IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISM 78 (407)
Q Consensus 4 ~~~~~~~~~s----~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~-~~~I~r~~~dG~~~~~l~~~~~~~ 78 (407)
+..+..+.|+ +.+...+++...+.+....+.|+.++..|..+++||+++.- .+.|+..++++..+..+....+..
T Consensus 206 d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~d~ 285 (877)
T KOG1215|consen 206 DESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDCSDRQKLCDGDLDC 285 (877)
T ss_pred ccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCCccceEEecCccCC
Confidence 3334444444 46677778778888888899999999999999999999973 468999999999999998877888
Q ss_pred ceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEc
Q psy950 79 PRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158 (407)
Q Consensus 79 P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i 158 (407)
|.|++.|.....+|| .+++|+.+++++...+.++ ||+++.+..+.+...-. +. ...+.
T Consensus 286 pdg~de~~~~~~~~~---------~~~~d~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~-~~--~~~~~ 343 (877)
T KOG1215|consen 286 PDGLDEDYCKKKLYW---------SMNVDGSGRRILLSKLCHG----------YWTDGLNECAERVLKCS-HK--CPDVS 343 (877)
T ss_pred CCcccccccccceee---------eeecccCCceeeecccCcc----------ccccccccchhhccccc-CC--CCccc
Confidence 999999999999999 8889988887334555555 69998887766655543 21 12222
Q ss_pred ccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccc---ccceeee
Q psy950 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT---TMDEYLV 235 (407)
Q Consensus 159 ~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~---~~~~~Ll 235 (407)
........+...++..... ..++|.. .||+|+|+|++... ..++|.|+.||.+..++ |. .+.+||+
T Consensus 344 v~~~~~~~~~~~~~~~~~~--~~~~~~~-~~g~Csq~C~~~~p------~~~~c~c~~g~~~~~~~--c~~~~~~~~~l~ 412 (877)
T KOG1215|consen 344 VGPRCDCMGAKVLPLGART--DSNPCES-DNGGCSQLCVPNSP------GTFKCACSPGYELRLDK--CEASDQPEAFLL 412 (877)
T ss_pred cCCcccCCccceecccccc--cCCcccc-cCCccceeccCCCC------CceeEecCCCcEeccCC--ceecCCCCcEEE
Confidence 2233333444444433322 4578877 89999999995522 27999999999988777 54 4789999
Q ss_pred eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEE
Q psy950 236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEF 311 (407)
Q Consensus 236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAv 311 (407)
++.+..|++++++.... ..|+....++.++++|+.++++||+|... .+|.+...++..... ++. .++|||+
T Consensus 413 ~s~~~~ir~~~~~~~~~---~~p~~~~~~~~~~d~d~~~~~i~~~d~~~-~~i~~~~~~~~~~~~~~~~g~~-~~~~lav 487 (877)
T KOG1215|consen 413 FSNRHDIRRISLDCSDV---SRPLEGIKNAVALDFDVLNNRIYWADLSD-EKICRASQDGSSECELCGDGLC-IPEGLAV 487 (877)
T ss_pred EecCccceecccCCCcc---eEEccCCccceEEEEEecCCEEEEEeccC-CeEeeeccCCCccceEeccCcc-ccCcEEE
Confidence 99999999999977632 23455558899999999999999999999 899999988875443 566 9999999
Q ss_pred eccCCeEEEEeCCCCCeEEEEECCCCcc--c-ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEe
Q psy950 312 DYADDKILFTQIRPWAKIAWIPTTNPSS--A-SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILS 388 (407)
Q Consensus 312 Dwi~~~LYwtd~~~~~~I~v~~~~~~~r--l-~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~ 388 (407)
||+.+++||+|... ..|++..+++..+ + ..++..|+.+++||..|+|||+||+..++| .++.+||+.++.|+.
T Consensus 488 D~~~~~~y~tDe~~-~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i---~ra~~dg~~~~~l~~ 563 (877)
T KOG1215|consen 488 DWIGDNIYWTDEGN-CLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRI---ERASLDGSERAVLVT 563 (877)
T ss_pred EeccCCceecccCC-ceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchh---hhhcCCCCCceEEEe
Confidence 99999999999999 8999999998764 3 457799999999999999999999876677 234444444555554
Q ss_pred CC
Q psy950 389 RG 390 (407)
Q Consensus 389 ~~ 390 (407)
.+
T Consensus 564 ~~ 565 (877)
T KOG1215|consen 564 NG 565 (877)
T ss_pred CC
Confidence 44
No 4
>KOG1214|consensus
Probab=99.93 E-value=1.9e-25 Score=224.42 Aligned_cols=149 Identities=16% Similarity=0.240 Sum_probs=126.4
Q ss_pred eeeeeecccceEEeecCCCCC----eeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCC
Q psy950 232 EYLVFSTRTEIRALHLDPTLT----AVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNL 303 (407)
Q Consensus 232 ~~Ll~s~~~~I~~i~l~~~~~----~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~ 303 (407)
.+|||+....|..+++++..+ ...++.+ ...-+++||||-.+++|||+|... ..|.+++|+|.+... +|.
T Consensus 991 t~LL~aqg~~I~~lplng~~~~K~~ak~~l~~-p~~IiVGidfDC~e~mvyWtDv~g-~SI~rasL~G~Ep~ti~n~~L~ 1068 (1289)
T KOG1214|consen 991 TFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSL-PGSIIVGIDFDCRERMVYWTDVAG-RSISRASLEGAEPETIVNSGLI 1068 (1289)
T ss_pred ceEEEeccceEEEeecCcchhchhhhhceEec-ccceeeeeecccccceEEEeecCC-CccccccccCCCCceeecccCC
Confidence 599999999999999988533 1112222 235588999999999999999998 889999999987654 788
Q ss_pred CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cc-cCCCceeEEEEcCCCCeEEEEeCCC-CCcccccCCCCCC
Q psy950 304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--AS-SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS 379 (407)
Q Consensus 304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~-~~l~~P~~iavdp~~g~lywtd~~~-~~~ia~~dg~~~~ 379 (407)
+||||||||+++|+||||+.. .+|+|+.|+|..| |. ++|-+||+|++||.+|.||||||.+ .++| ..+.||
T Consensus 1069 -SPEGiAVDh~~Rn~ywtDS~l-D~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkI---ets~mD 1143 (1289)
T KOG1214|consen 1069 -SPEGIAVDHIRRNMYWTDSVL-DKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKI---ETSSMD 1143 (1289)
T ss_pred -Cccceeeeeccceeeeecccc-chhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcc---eeeccC
Confidence 999999999999999999999 8999999999976 43 6999999999999999999999976 5555 667788
Q ss_pred CcceeEEE
Q psy950 380 SASVNTIL 387 (407)
Q Consensus 380 ~~~~~~l~ 387 (407)
|+++..|+
T Consensus 1144 G~NrRili 1151 (1289)
T KOG1214|consen 1144 GENRRILI 1151 (1289)
T ss_pred CccceEEe
Confidence 88887554
No 5
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=2.8e-15 Score=165.33 Aligned_cols=281 Identities=14% Similarity=0.172 Sum_probs=192.0
Q ss_pred EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC-------------CCCCceeEEEeCCCCeEEE
Q psy950 27 LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN-------------GISMPRDLTIDMQTHDVYW 93 (407)
Q Consensus 27 l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~-------------~~~~P~glaiD~~~~~lYw 93 (407)
++.+.+..|.++|+|+.+|.||++|.+.+ +|.+.+.+|.-...+... .+..|.||++|..++.||+
T Consensus 562 ~~~s~l~~P~gvavd~~~g~lyVaDs~n~-rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 562 LLTSPLKFPGKLAIDLLNNRLFISDSNHN-RIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred cccccCCCCceEEEECCCCeEEEEECCCC-eEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 45567888999999999999999999876 999999998754444321 1457999999998899999
Q ss_pred EeCCCCeEEEEecCCCeEEEEcc-----------------CCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950 94 VDAKLDLIQKISYNGGNRQIIRR-----------------NLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITL 154 (407)
Q Consensus 94 ~d~~~~~I~~~~~dG~~~~~~~~-----------------~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~ 154 (407)
+|...++|.++++.+...+++.. .+.+|.+|++.. +.||++|..++.|.+.+..+ +.
T Consensus 641 aDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~-g~--- 716 (1057)
T PLN02919 641 ADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD-GV--- 716 (1057)
T ss_pred EeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC-Ce---
Confidence 99999999999998877666531 256899999985 79999999999999888664 21
Q ss_pred cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950 155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL 234 (407)
Q Consensus 155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L 234 (407)
.. ++. +. | +....++.
T Consensus 717 v~-------------~~~-------G~--------G---------------------------~~~~~~g~--------- 732 (1057)
T PLN02919 717 TR-------------VFS-------GD--------G---------------------------YERNLNGS--------- 732 (1057)
T ss_pred EE-------------EEe-------cC--------C---------------------------ccccCCCC---------
Confidence 11 110 00 0 00000000
Q ss_pred eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------------
Q psy950 235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-------------- 300 (407)
Q Consensus 235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-------------- 300 (407)
. . ....+..+.+|++++.+++||++|... ++|.++++++.....
T Consensus 733 -------~------~--------~~~~~~~P~GIavspdG~~LYVADs~n-~~Irv~D~~tg~~~~~~gg~~~~~~~l~~ 790 (1057)
T PLN02919 733 -------S------G--------TSTSFAQPSGISLSPDLKELYIADSES-SSIRALDLKTGGSRLLAGGDPTFSDNLFK 790 (1057)
T ss_pred -------c------c--------ccccccCccEEEEeCCCCEEEEEECCC-CeEEEEECCCCcEEEEEecccccCccccc
Confidence 0 0 001223467788888888899999888 788888876432110
Q ss_pred -----------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--c--------------ccCCCceeEEEEc
Q psy950 301 -----------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--A--------------SSNLTNVVGVEFD 353 (407)
Q Consensus 301 -----------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l--------------~~~l~~P~~iavd 353 (407)
.+. +|.|||+|.-+ +||.+|..+ ++|.+++.++... + ...+..|.||+++
T Consensus 791 fG~~dG~g~~~~l~-~P~Gvavd~dG-~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd 867 (1057)
T PLN02919 791 FGDHDGVGSEVLLQ-HPLGVLCAKDG-QIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG 867 (1057)
T ss_pred ccCCCCchhhhhcc-CCceeeEeCCC-cEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe
Confidence 123 78999999754 699999999 8999999876532 1 1245799999999
Q ss_pred CCCCeEEEEeCCCCCcccccCCCCCCCcceeEEEeCCCccceeec-cchhh
Q psy950 354 YADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRGKDEKAKIE-NEQDL 403 (407)
Q Consensus 354 p~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 403 (407)
+ .|.||.+|.++. +|..+|-..-....+.+|...+..-+-.+. +.+||
T Consensus 868 ~-dG~lyVaDt~Nn-~Irvid~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 916 (1057)
T PLN02919 868 E-NGRLFVADTNNS-LIRYLDLNKGEAAEILTLELKGVQPPRPKSKSLKRL 916 (1057)
T ss_pred C-CCCEEEEECCCC-EEEEEECCCCccceeEeeccccccCCCCcccchhhh
Confidence 8 568999997655 353333222222234455555554444443 33444
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.52 E-value=1.6e-11 Score=114.69 Aligned_cols=223 Identities=14% Similarity=0.155 Sum_probs=151.7
Q ss_pred cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEE
Q psy950 35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQII 114 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~ 114 (407)
|.|++.|+..|.|||+|.... +|.|.+.++...+++... .|.|++++...++||+++.... ...++.....+.+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~-~i~~~~~~~~~~~~~~~~---~~~G~~~~~~~g~l~v~~~~~~--~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGG-RIYRVDPDTGEVEVIDLP---GPNGMAFDRPDGRLYVADSGGI--AVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTT-EEEEEETTTTEEEEEESS---SEEEEEEECTTSEEEEEETTCE--EEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCC-EEEEEECCCCeEEEEecC---CCceEEEEccCCEEEEEEcCce--EEEecCCCcEEEE
Confidence 678999999999999998764 999999998766554432 3999999977799999997444 4448776666555
Q ss_pred c-c-----CCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950 115 R-R-----NLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT 187 (407)
Q Consensus 115 ~-~-----~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~ 187 (407)
. . ....|.+++++. +.||+|+...... . . ... -.|..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~------~--~-~~~----------g~v~~----------------- 119 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA------S--G-IDP----------GSVYR----------------- 119 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT------T--C-GGS----------EEEEE-----------------
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCcc------c--c-ccc----------cceEE-----------------
Confidence 4 1 567888999987 7888886543210 0 0 000 00000
Q ss_pred CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950 188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG 267 (407)
Q Consensus 188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a 267 (407)
+.++++ +. .....+..+-+
T Consensus 120 --------------------------------~~~~~~----------------~~-------------~~~~~~~~pNG 138 (246)
T PF08450_consen 120 --------------------------------IDPDGK----------------VT-------------VVADGLGFPNG 138 (246)
T ss_dssp --------------------------------EETTSE----------------EE-------------EEEEEESSEEE
T ss_pred --------------------------------ECCCCe----------------EE-------------EEecCcccccc
Confidence 011100 00 00112334568
Q ss_pred EEEEcCCCEEEEEEecCCceEEEEeCCCCcc-----cc--cC--C-CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950 268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSS-----AS--SN--L-TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP 337 (407)
Q Consensus 268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~-----~~--~~--~-~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~ 337 (407)
|++++.++.||++|... ++|.++.++.... .. .+ . ..|.||++|- .++||.++... ++|.+++.+|.
T Consensus 139 i~~s~dg~~lyv~ds~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~-~~I~~~~p~G~ 215 (246)
T PF08450_consen 139 IAFSPDGKTLYVADSFN-GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGG-GRIVVFDPDGK 215 (246)
T ss_dssp EEEETTSSEEEEEETTT-TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETT-TEEEEEETTSC
T ss_pred eEECCcchheeeccccc-ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCC-CEEEEECCCcc
Confidence 89999999999999998 8899988864322 11 11 1 1599999998 66899999988 89999999976
Q ss_pred cc--cccCCCceeEEEE-cCCCCeEEEEe
Q psy950 338 SS--ASSNLTNVVGVEF-DYADDKILFTQ 363 (407)
Q Consensus 338 ~r--l~~~l~~P~~iav-dp~~g~lywtd 363 (407)
.. +.-...+|..+++ -|..+.||.|-
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 42 3334579999999 57789999985
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.45 E-value=9.4e-11 Score=129.80 Aligned_cols=218 Identities=13% Similarity=0.186 Sum_probs=150.5
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC----------------CCCCceeEEEeCCCCeEEEEe
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN----------------GISMPRDLTIDMQTHDVYWVD 95 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~----------------~~~~P~glaiD~~~~~lYw~d 95 (407)
+.+|.|||+|+..+.||++|.+++ +|.+.++.+...+++... .+..|.++++|+.+++||++|
T Consensus 623 f~~P~GIavd~~gn~LYVaDt~n~-~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad 701 (1057)
T PLN02919 623 FNRPQGLAYNAKKNLLYVADTENH-ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAM 701 (1057)
T ss_pred cCCCcEEEEeCCCCEEEEEeCCCc-eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEE
Confidence 457999999999999999999865 999999877666655421 145799999999999999999
Q ss_pred CCCCeEEEEecCCCeEEEEc---------------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEc
Q psy950 96 AKLDLIQKISYNGGNRQIIR---------------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPI 158 (407)
Q Consensus 96 ~~~~~I~~~~~dG~~~~~~~---------------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i 158 (407)
...++|...+..+....++. ..+.+|.||++.. ++||++|..+++|.+++..+ +. ..++
T Consensus 702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t-g~---~~~~ 777 (1057)
T PLN02919 702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT-GG---SRLL 777 (1057)
T ss_pred CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC-Cc---EEEE
Confidence 99999999988655443322 1357899999986 56999999999999999775 21 1111
Q ss_pred ccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec
Q psy950 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST 238 (407)
Q Consensus 159 ~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~ 238 (407)
.. ..|....+... + | ..|+...
T Consensus 778 ~g--------------g~~~~~~~l~~------------------------f------G---~~dG~g~----------- 799 (1057)
T PLN02919 778 AG--------------GDPTFSDNLFK------------------------F------G---DHDGVGS----------- 799 (1057)
T ss_pred Ee--------------cccccCccccc------------------------c------c---CCCCchh-----------
Confidence 10 00000000000 0 0 0011000
Q ss_pred ccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-----------------c
Q psy950 239 RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-----------------S 301 (407)
Q Consensus 239 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-----------------~ 301 (407)
...+..+.++.+|+.+ .||++|... ++|.+++.++..... .
T Consensus 800 --------------------~~~l~~P~Gvavd~dG-~LYVADs~N-~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 800 --------------------EVLLQHPLGVLCAKDG-QIYVADSYN-HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQ 857 (1057)
T ss_pred --------------------hhhccCCceeeEeCCC-cEEEEECCC-CEEEEEECCCCeEEEEeccCCcCCCCCcccccc
Confidence 0012335677787654 589999888 888888876543321 2
Q ss_pred CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950 302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP 337 (407)
Q Consensus 302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~ 337 (407)
+. .|.|||+|.-+ +||.+|..+ ++|.+++++..
T Consensus 858 l~-~P~GIavd~dG-~lyVaDt~N-n~Irvid~~~~ 890 (1057)
T PLN02919 858 LS-EPAGLALGENG-RLFVADTNN-SLIRYLDLNKG 890 (1057)
T ss_pred cC-CceEEEEeCCC-CEEEEECCC-CEEEEEECCCC
Confidence 33 79999999865 699999999 89999998765
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.28 E-value=1.8e-08 Score=99.05 Aligned_cols=257 Identities=11% Similarity=0.056 Sum_probs=164.8
Q ss_pred EEEEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC--CCCeEEEEeCCCC-CeEEEEe---CCCCCceeEE
Q psy950 10 LIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG--QYPRIGKSYLDGS-KWTSIVS---NGISMPRDLT 83 (407)
Q Consensus 10 ~~~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~--~~~~I~r~~~dG~-~~~~l~~---~~~~~P~gla 83 (407)
=|+..+++...+....+-......+|.-|++||..++||.++.. ....|....++.. ....++. ..-..|..|+
T Consensus 14 gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~ 93 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIA 93 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEE
T ss_pred cEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEE
Confidence 35555555555555544445568899999999999999999985 4568887777765 3333322 2345899999
Q ss_pred EeCCCCeEEEEeCCCCeEEEEecCC--CeEE---EEc----------cCCCCceEEEEeC--CEEEEEeCCCCeEEEEec
Q psy950 84 IDMQTHDVYWVDAKLDLIQKISYNG--GNRQ---IIR----------RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASK 146 (407)
Q Consensus 84 iD~~~~~lYw~d~~~~~I~~~~~dG--~~~~---~~~----------~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~ 146 (407)
+|+.++.||+++...+.|..++++. .-.. ++. +...||..+.+.+ .+||.+|....+|...+.
T Consensus 94 ~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~ 173 (345)
T PF10282_consen 94 VDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDI 173 (345)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred EecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEE
Confidence 9999999999999999999888864 3222 221 3568899998875 589999988888777665
Q ss_pred CCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCc
Q psy950 147 LASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKK 226 (407)
Q Consensus 147 ~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~ 226 (407)
+. .. ...+ .......
T Consensus 174 ~~-~~-~~l~-------------~~~~~~~-------------------------------------------------- 188 (345)
T PF10282_consen 174 DD-DT-GKLT-------------PVDSIKV-------------------------------------------------- 188 (345)
T ss_dssp -T-TS--TEE-------------EEEEEEC--------------------------------------------------
T ss_pred eC-CC-ceEE-------------Eeecccc--------------------------------------------------
Confidence 54 10 0000 0000000
Q ss_pred ccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCC--CCcc------
Q psy950 227 CTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT--NPSS------ 298 (407)
Q Consensus 227 C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~--~~~~------ 298 (407)
.....|..+.|++.++++|+.+... +.|..+.++ ....
T Consensus 189 ---------------------------------~~G~GPRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~~~~g~~~~~~~~ 234 (345)
T PF10282_consen 189 ---------------------------------PPGSGPRHLAFSPDGKYAYVVNELS-NTVSVFDYDPSDGSLTEIQTI 234 (345)
T ss_dssp ---------------------------------STTSSEEEEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEE
T ss_pred ---------------------------------ccCCCCcEEEEcCCcCEEEEecCCC-CcEEEEeecccCCceeEEEEe
Confidence 0111233444555555555555544 444444443 1100
Q ss_pred ------cccCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc-c------cccCCCceeEEEEcCCCCeEEEEeCC
Q psy950 299 ------ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-S------ASSNLTNVVGVEFDYADDKILFTQIR 365 (407)
Q Consensus 299 ------~~~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~-r------l~~~l~~P~~iavdp~~g~lywtd~~ 365 (407)
..+.. .+.+|++.+.++.||.++.+. ++|.+++++... . +......|++++++|...+||-++..
T Consensus 235 ~~~~~~~~~~~-~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 235 STLPEGFTGEN-APAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp ESCETTSCSSS-SEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred eeccccccccC-CceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 00112 688999999999999999999 899999986432 1 22356789999999999999999875
Q ss_pred CC
Q psy950 366 PW 367 (407)
Q Consensus 366 ~~ 367 (407)
+.
T Consensus 313 s~ 314 (345)
T PF10282_consen 313 SN 314 (345)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 9
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=99.25 E-value=2.1e-11 Score=81.14 Aligned_cols=42 Identities=31% Similarity=0.729 Sum_probs=39.7
Q ss_pred CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeC
Q psy950 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDM 86 (407)
Q Consensus 45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~ 86 (407)
++|||||++..++|++++|||++++++++.++..|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 689999999767999999999999999999999999999996
No 10
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=99.16 E-value=1.8e-11 Score=77.85 Aligned_cols=36 Identities=39% Similarity=1.026 Sum_probs=30.8
Q ss_pred ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227 (407)
Q Consensus 184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C 227 (407)
|.. +||+|+|+|++.++ +|+|+||.||.|++|+++|
T Consensus 1 C~~-~NGgC~h~C~~~~g-------~~~C~C~~Gy~L~~D~~tC 36 (36)
T PF14670_consen 1 CSV-NNGGCSHICVNTPG-------SYRCSCPPGYKLAEDGRTC 36 (36)
T ss_dssp CTT-GGGGSSSEEEEETT-------SEEEE-STTEEE-TTSSSE
T ss_pred CCC-CCCCcCCCCccCCC-------ceEeECCCCCEECcCCCCC
Confidence 455 79999999999987 5999999999999999998
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.11 E-value=3.3e-07 Score=89.27 Aligned_cols=264 Identities=9% Similarity=0.027 Sum_probs=157.6
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC--
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN-- 107 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d-- 107 (407)
...|..|+++|...+||.+.+.. ..|...++++.....++. .....|.+|++++.++.||.+....+.|...+++
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPE-FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCC-CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 36799999999999999998764 477766666433322222 1234799999999999999999888999888875
Q ss_pred CCeEEEE--ccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950 108 GGNRQII--RRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP 183 (407)
Q Consensus 108 G~~~~~~--~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~ 183 (407)
|...+.+ .....+|.++++.+ +++|.++...+.|...+....+. +.... +..+ ..+. +.
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~------l~~~~--~~~~------~~~~-g~-- 175 (330)
T PRK11028 113 GIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH------LVAQE--PAEV------TTVE-GA-- 175 (330)
T ss_pred CCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc------ccccC--CCce------ecCC-CC--
Confidence 4222222 23457899999876 58999999888877776553110 00000 0000 0000 00
Q ss_pred ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCC-CCeeeeEee-
Q psy950 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPT-LTAVPFKTV- 259 (407)
Q Consensus 184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~-~~~~~~~~~- 259 (407)
++.|+ .+.+|++ +++.++ ...|.-+.++.. ..-..+..+
T Consensus 176 -------~p~~~-----------------------~~~pdg~-------~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~ 218 (330)
T PRK11028 176 -------GPRHM-----------------------VFHPNQQ-------YAYCVNELNSSVDVWQLKDPHGEIECVQTLD 218 (330)
T ss_pred -------CCceE-----------------------EECCCCC-------EEEEEecCCCEEEEEEEeCCCCCEEEEEEEe
Confidence 11111 1122222 111111 123333333321 000000011
Q ss_pred ------cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--cc-c---cCCCCccEEEEeccCCeEEEEeCCCCC
Q psy950 260 ------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--SA-S---SNLTNVVGVEFDYADDKILFTQIRPWA 327 (407)
Q Consensus 260 ------~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--~~-~---~~~~~~~glAvDwi~~~LYwtd~~~~~ 327 (407)
.....+.++.+++.++++|.++... +.|..++++... .. . ..+..|.++++++.++.||.++... +
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~-~ 296 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS-H 296 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccC-C
Confidence 1122344688899999999998877 778777664322 11 1 2334789999999999999999888 8
Q ss_pred eEEEEECCCCc----cc--ccCCCceeEEEE
Q psy950 328 KIAWIPTTNPS----SA--SSNLTNVVGVEF 352 (407)
Q Consensus 328 ~I~v~~~~~~~----rl--~~~l~~P~~iav 352 (407)
+|.+++++... .+ ......|..|++
T Consensus 297 ~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 297 HISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred cEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 99998876332 11 123578988887
No 12
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=2e-08 Score=93.72 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=89.6
Q ss_pred CCCCcceEEEeCCCCEEEEEEcCCC-------CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950 31 FRSANTTSPFSPLPRLLYWIDYGQY-------PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK 103 (407)
Q Consensus 31 ~~~~P~~iavdp~~g~lywtd~~~~-------~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~ 103 (407)
....|-.+++||. |.||+++.+.. ++|+|.+.+|. .+.+. .++..|+||++++.++.||++|...++|.+
T Consensus 84 ~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~ 160 (246)
T PF08450_consen 84 PFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWR 160 (246)
T ss_dssp CTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEE
T ss_pred ccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCCCe-EEEEe-cCcccccceEECCcchheeecccccceeEE
Confidence 3556999999997 77999997531 47999999944 33333 368899999999999999999999999999
Q ss_pred EecC--CC---eEEEEc--cC-CCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950 104 ISYN--GG---NRQIIR--RN-LPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 104 ~~~d--G~---~~~~~~--~~-~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~ 148 (407)
.+++ +. +++++. .. ...|-|++++. +.||.+++..++|.+.+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G 214 (246)
T PF08450_consen 161 FDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDG 214 (246)
T ss_dssp EEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTS
T ss_pred EeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCc
Confidence 9996 33 234443 22 23699999987 89999999999999999885
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.99 E-value=1.1e-06 Score=86.39 Aligned_cols=210 Identities=13% Similarity=0.043 Sum_probs=141.4
Q ss_pred CCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCC--CCeEE--EEe----------CCCCCceeEEEeCCCCeEEEEeC
Q psy950 31 FRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDG--SKWTS--IVS----------NGISMPRDLTIDMQTHDVYWVDA 96 (407)
Q Consensus 31 ~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG--~~~~~--l~~----------~~~~~P~glaiD~~~~~lYw~d~ 96 (407)
.-..|-.|++||..++||.++.+.. .|....++. +-... ++. .....|+.+.+++.++.||.+|.
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g-~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl 163 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGG-SVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL 163 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTT-EEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET
T ss_pred CCCCcEEEEEecCCCEEEEEEccCC-eEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec
Confidence 3457999999999999999999864 787777764 33222 221 12346899999999999999999
Q ss_pred CCCeEEEEecCCCe--EE---E-EccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceee
Q psy950 97 KLDLIQKISYNGGN--RQ---I-IRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDI 168 (407)
Q Consensus 97 ~~~~I~~~~~dG~~--~~---~-~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i 168 (407)
+.++|...+++... .. . -......|+.|++.. .++|.+.-.++.|...+... ... ..+.+.
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~-~~g-~~~~~~--------- 232 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP-SDG-SLTEIQ--------- 232 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET-TTT-EEEEEE---------
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc-cCC-ceeEEE---------
Confidence 99999999998654 21 1 236778999999987 58999988888777666552 000 111100
Q ss_pred EEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecC
Q psy950 169 AIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLD 248 (407)
Q Consensus 169 ~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~ 248 (407)
... + .|.++.
T Consensus 233 -~~~-----------~-----------------------------~~~~~~----------------------------- 242 (345)
T PF10282_consen 233 -TIS-----------T-----------------------------LPEGFT----------------------------- 242 (345)
T ss_dssp -EEE-----------S-----------------------------CETTSC-----------------------------
T ss_pred -Eee-----------e-----------------------------cccccc-----------------------------
Confidence 000 0 000000
Q ss_pred CCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCc--ccc-----cCCCCccEEEEeccCCeEEEE
Q psy950 249 PTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS--SAS-----SNLTNVVGVEFDYADDKILFT 321 (407)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~--~~~-----~~~~~~~glAvDwi~~~LYwt 321 (407)
....+.+|.+++.+++||+++... +.|..+.++... ... .-+..|.+|++|+.++.||.+
T Consensus 243 ------------~~~~~~~i~ispdg~~lyvsnr~~-~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 243 ------------GENAPAEIAISPDGRFLYVSNRGS-NSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp ------------SSSSEEEEEE-TTSSEEEEEECTT-TEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred ------------ccCCceeEEEecCCCEEEEEeccC-CEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 001345677888899999999888 778887775431 111 224479999999999999999
Q ss_pred eCCCCCeEEEEECCC
Q psy950 322 QIRPWAKIAWIPTTN 336 (407)
Q Consensus 322 d~~~~~~I~v~~~~~ 336 (407)
+... +.|.+++.+.
T Consensus 310 ~~~s-~~v~vf~~d~ 323 (345)
T PF10282_consen 310 NQDS-NTVSVFDIDP 323 (345)
T ss_dssp ETTT-TEEEEEEEET
T ss_pred ecCC-CeEEEEEEeC
Confidence 9999 8999987653
No 14
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.4e-06 Score=86.76 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=157.3
Q ss_pred CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEE-EEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950 33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTS-IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~-l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~ 111 (407)
..|.++++++....+|+++.... .|...+.- .+..+ ....+...|.+++++..+.++|..+...+.|..++......
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~ 108 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSN-DVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTV 108 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCc-eeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccce
Confidence 37999999999999999987654 45544444 33222 23334468999999999999999999999999999655544
Q ss_pred EEEccCCCCceEEEEeC--CEEEEEeCC--CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950 112 QIIRRNLPNPMGIAVHK--SDVYWVDRN--LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT 187 (407)
Q Consensus 112 ~~~~~~~~~P~~lav~~--~~lYwtd~~--~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~ 187 (407)
.........|.++++.. +.+|.++.. ++.+..++..+ . .++.
T Consensus 109 ~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~-----~~~~---------------------------- 154 (381)
T COG3391 109 LGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-N-----KVTA---------------------------- 154 (381)
T ss_pred eeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-C-----eEEE----------------------------
Confidence 33333344888888865 799999884 45555555443 0 0000
Q ss_pred CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950 188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG 267 (407)
Q Consensus 188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a 267 (407)
.+ ++ ...+.+
T Consensus 155 --------------------------------------------------------~~------------~v--G~~P~~ 164 (381)
T COG3391 155 --------------------------------------------------------TI------------PV--GNTPTG 164 (381)
T ss_pred --------------------------------------------------------EE------------ec--CCCcce
Confidence 00 00 001245
Q ss_pred EEEEcCCCEEEEEEecCCceEEEEeCCCCccc-------ccCCCCccEEEEeccCCeEEEEeCCCC-CeEEEEECCCCcc
Q psy950 268 VEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-------SSNLTNVVGVEFDYADDKILFTQIRPW-AKIAWIPTTNPSS 339 (407)
Q Consensus 268 ld~d~~~~~lywsd~~~~~~I~~~~~~~~~~~-------~~~~~~~~glAvDwi~~~LYwtd~~~~-~~I~v~~~~~~~r 339 (407)
+++++.++++|.++... +.|..++.++.... ..++..|.+++++..+.++|.++.... +++.+++......
T Consensus 165 ~a~~p~g~~vyv~~~~~-~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v 243 (381)
T COG3391 165 VAVDPDGNKVYVTNSDD-NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNV 243 (381)
T ss_pred EEECCCCCeEEEEecCC-CeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceE
Confidence 67788888888888666 77777776665433 245559999999999999999998872 3788888877653
Q ss_pred -----cccCCCceeEEEEcCCCCeEEEEeC
Q psy950 340 -----ASSNLTNVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 340 -----l~~~l~~P~~iavdp~~g~lywtd~ 364 (407)
....+ .|.+++++|...++|..+-
T Consensus 244 ~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~ 272 (381)
T COG3391 244 TATDLPVGSG-APRGVAVDPAGKAAYVANS 272 (381)
T ss_pred EEeccccccC-CCCceeECCCCCEEEEEec
Confidence 23455 8999999999998888854
No 15
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.91 E-value=5.4e-06 Score=80.75 Aligned_cols=262 Identities=10% Similarity=0.042 Sum_probs=153.3
Q ss_pred CEEEEEEcCCCCeEEEEeCCCCCeEEEEe--CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe-EEEEc--cCCC
Q psy950 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVS--NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-RQIIR--RNLP 119 (407)
Q Consensus 45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~-~~~~~--~~~~ 119 (407)
.++|.++.... .|...+++......+++ .....|..|++++.++.||++....+.|...++++.. .+.+. ....
T Consensus 2 ~~~y~~~~~~~-~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 80 (330)
T PRK11028 2 QIVYIASPESQ-QIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG 80 (330)
T ss_pred eEEEEEcCCCC-CEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC
Confidence 46888877654 78887875222212221 1235799999999999999998888888877776322 22221 2345
Q ss_pred CceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccce
Q psy950 120 NPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCF 197 (407)
Q Consensus 120 ~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~ 197 (407)
+|.+|++.. ..||.+....+.|...+....+. ..+.+. .. + . ..+|..++
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~----------~~-----~--~--------~~~~~~~~- 132 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQ----------II-----E--G--------LEGCHSAN- 132 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC--CCCcee----------ec-----c--C--------CCcccEeE-
Confidence 799999985 67998887777666555432111 000000 00 0 0 00111111
Q ss_pred ecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCe----eeeEeecCCcceEEEEEE
Q psy950 198 SYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTA----VPFKTVSNLTNVVGVEFD 271 (407)
Q Consensus 198 ~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~----~~~~~~~~~~~~~ald~d 271 (407)
+.+|++ +++++. ...|.-+.++....- .....+.....+..+.|+
T Consensus 133 ----------------------~~p~g~-------~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~ 183 (330)
T PRK11028 133 ----------------------IDPDNR-------TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH 183 (330)
T ss_pred ----------------------eCCCCC-------EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEEC
Confidence 112221 122221 123444444331100 001112224557789999
Q ss_pred cCCCEEEEEEecCCceEEEEeCCCC--cc--cccCC---------CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950 272 YADDKILFTQIRPWAKIAWIPTTNP--SS--ASSNL---------TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS 338 (407)
Q Consensus 272 ~~~~~lywsd~~~~~~I~~~~~~~~--~~--~~~~~---------~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~ 338 (407)
+.++++|.++... +.|...+++.. .. ...+. ..+.+|++++-++.||.++... ++|.+++.+...
T Consensus 184 pdg~~lyv~~~~~-~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-~~I~v~~i~~~~ 261 (330)
T PRK11028 184 PNQQYAYCVNELN-SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-SLISVFSVSEDG 261 (330)
T ss_pred CCCCEEEEEecCC-CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC-CeEEEEEEeCCC
Confidence 9999999999877 77888777531 11 10111 1234689999999999998887 899998875322
Q ss_pred ---ccc---cCCCceeEEEEcCCCCeEEEEeCCC
Q psy950 339 ---SAS---SNLTNVVGVEFDYADDKILFTQIRP 366 (407)
Q Consensus 339 ---rl~---~~l~~P~~iavdp~~g~lywtd~~~ 366 (407)
.+. .....|++++++|...+||-++.++
T Consensus 262 ~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~ 295 (330)
T PRK11028 262 SVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKS 295 (330)
T ss_pred CeEEEeEEEeccccCCceEECCCCCEEEEEEccC
Confidence 121 1236899999999999999998644
No 16
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.73 E-value=4e-08 Score=65.32 Aligned_cols=40 Identities=35% Similarity=0.667 Sum_probs=36.4
Q ss_pred CeEEEEeCCCC-eEEEEecCCCeEEEEc-cCCCCceEEEEeC
Q psy950 89 HDVYWVDAKLD-LIQKISYNGGNRQIIR-RNLPNPMGIAVHK 128 (407)
Q Consensus 89 ~~lYw~d~~~~-~I~~~~~dG~~~~~~~-~~~~~P~~lav~~ 128 (407)
++|||+|...+ .|+++++||++++++. ..+.+|.||||+.
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 9999999999987765 7899999999973
No 17
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.71 E-value=0.00019 Score=67.80 Aligned_cols=258 Identities=12% Similarity=0.055 Sum_probs=147.8
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~ 111 (407)
-..|++++++|..+.+|.+.... ..|...++++......+.. ...|..+++++.++.||.+....+.|...++.....
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~-~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDS-DTIQVIDLATGEVIGTLPS-GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCC-CeEEEEECCCCcEEEeccC-CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 45689999999988899887654 3888888875443332322 235788999999889999887778999999876443
Q ss_pred EEEccCCCCceEEEEeC-C-EEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCc
Q psy950 112 QIIRRNLPNPMGIAVHK-S-DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGN 189 (407)
Q Consensus 112 ~~~~~~~~~P~~lav~~-~-~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~n 189 (407)
.........|.++++.+ + .++.+......+...+..+ + ..+. .+. + ...+
T Consensus 108 ~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~-----~~~~---------~~~----~---~~~~------ 159 (300)
T TIGR03866 108 LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-Y-----EIVD---------NVL----V---DQRP------ 159 (300)
T ss_pred EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-C-----eEEE---------EEE----c---CCCc------
Confidence 22222234578888865 3 3444433323333334322 1 0100 000 0 0000
Q ss_pred ccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec--ccceEEeecCCCCCeeeeE-ee----cCC
Q psy950 190 GGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST--RTEIRALHLDPTLTAVPFK-TV----SNL 262 (407)
Q Consensus 190 g~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~--~~~I~~i~l~~~~~~~~~~-~~----~~~ 262 (407)
.++++ .+|++ +|+++. ...+.-+.+........+. .. ...
T Consensus 160 ---~~~~~-----------------------s~dg~-------~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 160 ---RFAEF-----------------------TADGK-------ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred ---cEEEE-----------------------CCCCC-------EEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence 00000 11111 011111 1122222222110000000 00 011
Q ss_pred cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc
Q psy950 263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA 340 (407)
Q Consensus 263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl 340 (407)
..+.++.|++.++.+|++.... ++|..+++.+..... ..+..+.++++.+-++.||-++... ++|.+.++.+...+
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPA-NRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-NDVSVIDVAALKVI 284 (300)
T ss_pred CCccceEECCCCCEEEEEcCCC-CeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCC-CeEEEEECCCCcEE
Confidence 2345688898899999887666 678888876544332 2334788999999999999888766 78999999887642
Q ss_pred --ccCCCceeEEEEcC
Q psy950 341 --SSNLTNVVGVEFDY 354 (407)
Q Consensus 341 --~~~l~~P~~iavdp 354 (407)
..--..|.+|++.|
T Consensus 285 ~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 285 KSIKVGRLPWGVVVRP 300 (300)
T ss_pred EEEEcccccceeEeCC
Confidence 23348999999865
No 18
>KOG4659|consensus
Probab=98.70 E-value=1.3e-05 Score=86.25 Aligned_cols=308 Identities=15% Similarity=0.109 Sum_probs=190.1
Q ss_pred EEEEEEeeeeecCCcceEEEcCC--CC------CcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE-------E-
Q psy950 9 SLIWAIRLALRLLKKKKKLKTSF--RS------ANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI-------V- 72 (407)
Q Consensus 9 ~~~~s~~~~~~~~~~~~~l~~~~--~~------~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l-------~- 72 (407)
+++|.++...+-|...+.-+..+ ++ --.||.---..+++|.++. -+.|.-+-.||-.|.+- .
T Consensus 283 ~ivW~~rt~~l~G~~m~~s~~g~W~LdiHH~ln~~~gIl~kGnG~n~~it~~--Prvitt~mgdG~qR~veC~~C~G~a~ 360 (1899)
T KOG4659|consen 283 TIVWQTRTSQLMGATMRKSIGGGWTLDIHHHLNIVNGILEKGNGGNRLITEE--PRVITTAMGDGHQRDVECPKCEGKAD 360 (1899)
T ss_pred eeeeeeehhhhccccccchhcCcceeecceecccccCeEEecCCcceEeecC--CceEEEeccCcccccccCCCCCCccc
Confidence 68999999988887655544332 11 1244444445678888862 12445555567655431 1
Q ss_pred eCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc---cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecC
Q psy950 73 SNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR---RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKL 147 (407)
Q Consensus 73 ~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~---~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~ 147 (407)
+..+..|..||.-+ .+-||+-|. +.|.++..||+-+.++. ....|-+-||+.+ +.||.+|..+..|+|+.--
T Consensus 361 ~~~L~aPvala~a~-DGSl~VGDf--NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl 437 (1899)
T KOG4659|consen 361 SISLFAPVALAYAP-DGSLIVGDF--NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSL 437 (1899)
T ss_pred cceeeceeeEEEcC-CCcEEEccc--hheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccC
Confidence 12466899999988 578999996 88999999999887765 4567789999988 9999999999999998754
Q ss_pred CCCC--CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCC
Q psy950 148 ASTN--ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPK 225 (407)
Q Consensus 148 ~~g~--~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~ 225 (407)
. ++ ..+.++++. ...||......|.. |+ ....++-.-|-|..++.
T Consensus 438 ~-~~d~~~N~evvaG------------~Ge~Clp~desCGD---Ga--------------lA~dA~L~~PkGIa~dk--- 484 (1899)
T KOG4659|consen 438 E-PQDSRNNYEVVAG------------DGEVCLPADESCGD---GA--------------LAQDAQLIFPKGIAFDK--- 484 (1899)
T ss_pred C-ccccccCeeEEec------------cCcCccccccccCc---ch--------------hcccceeccCCceeEcc---
Confidence 3 11 112222221 11222211111321 11 01123334444444333
Q ss_pred cccccceeeeeecccceEEeecCCC--------CCe-eeeEeec-------CCcceEEEEEEcCCCEEEEEEecCCceEE
Q psy950 226 KCTTMDEYLVFSTRTEIRALHLDPT--------LTA-VPFKTVS-------NLTNVVGVEFDYADDKILFTQIRPWAKIA 289 (407)
Q Consensus 226 ~C~~~~~~Ll~s~~~~I~~i~l~~~--------~~~-~~~~~~~-------~~~~~~ald~d~~~~~lywsd~~~~~~I~ 289 (407)
..+|.|++.+.|+.+.-+.. .+. .|..+-+ .++-|..|++||-++.||+.|..- |.
T Consensus 485 -----~g~lYfaD~t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nv---vl 556 (1899)
T KOG4659|consen 485 -----MGNLYFADGTRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNV---VL 556 (1899)
T ss_pred -----CCcEEEecccEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecce---EE
Confidence 34689999999998865441 111 1111111 157789999999999999998654 44
Q ss_pred EEeCCCCccc------------------c-----cCCCCccEEEEeccCCeEEEEeCCCCCeEE---EEECCCCcc----
Q psy950 290 WIPTTNPSSA------------------S-----SNLTNVVGVEFDYADDKILFTQIRPWAKIA---WIPTTNPSS---- 339 (407)
Q Consensus 290 ~~~~~~~~~~------------------~-----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~---v~~~~~~~r---- 339 (407)
++..++..+. + .+. .+.+|||-. .+-||.+++.. .+|. ++..+|.-.
T Consensus 557 rit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~-~~r~Iavg~-~G~lyvaEsD~-rriNrvr~~~tdg~i~ilaG 633 (1899)
T KOG4659|consen 557 RITVVHRVRIILGRPTHCDLANATSSASKLADHRTLL-IQRDIAVGT-DGALYVAESDG-RRINRVRKLSTDGTISILAG 633 (1899)
T ss_pred EEccCccEEEEcCCccccccCCCchhhhhhhhhhhhh-hhhceeecC-CceEEEEeccc-hhhhheEEeccCceEEEecC
Confidence 4433322110 0 233 678899865 46899998876 4443 333333210
Q ss_pred ---------------------cc--cCCCceeEEEEcCCCCeEEEEeCCC
Q psy950 340 ---------------------AS--SNLTNVVGVEFDYADDKILFTQIRP 366 (407)
Q Consensus 340 ---------------------l~--~~l~~P~~iavdp~~g~lywtd~~~ 366 (407)
.. ..++.|.++||-| .|.+|-+|.++
T Consensus 634 a~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsP-dg~v~IAD~gN 682 (1899)
T KOG4659|consen 634 AKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSP-DGDVIIADSGN 682 (1899)
T ss_pred CCCCCCcccccCCccccccchhhhccccCCcceEEECC-CCcEEEecCCc
Confidence 01 3678999999999 58999999986
No 19
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.68 E-value=2.3e-05 Score=72.93 Aligned_cols=192 Identities=13% Similarity=0.145 Sum_probs=113.3
Q ss_pred CCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcc
Q psy950 77 SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITL 154 (407)
Q Consensus 77 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~ 154 (407)
..+.||+.++.++.||.+.-....|...+++|.-.+.+. .....|-||++-+ +.+..++-+.+.++.+.... .+..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~--~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD--DTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE------TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec--cccc
Confidence 368999999999999999999999999999987665543 6678999999988 55555555556665555432 0000
Q ss_pred cEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950 155 PTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL 234 (407)
Q Consensus 155 ~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L 234 (407)
... .
T Consensus 100 ~~~-----------~----------------------------------------------------------------- 103 (248)
T PF06977_consen 100 LDR-----------A----------------------------------------------------------------- 103 (248)
T ss_dssp --E-----------E-----------------------------------------------------------------
T ss_pred cch-----------h-----------------------------------------------------------------
Confidence 000 0
Q ss_pred eeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeC--CCCccc----------c-c
Q psy950 235 VFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT--TNPSSA----------S-S 301 (407)
Q Consensus 235 l~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~--~~~~~~----------~-~ 301 (407)
...++.+... .......-+|+||+.++++|.+.......|+.++. .+.... . .
T Consensus 104 ------~~~~~~l~~~--------~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 104 ------DVQKISLGFP--------NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp ------EEEEEE---S-----------SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred ------hceEEecccc--------cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccce
Confidence 0000111000 00112246889999999999886554256777765 222111 0 3
Q ss_pred CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc----c-------ccCCCceeEEEEcCCCCeEEEEe
Q psy950 302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS----A-------SSNLTNVVGVEFDYADDKILFTQ 363 (407)
Q Consensus 302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r----l-------~~~l~~P~~iavdp~~g~lywtd 363 (407)
+. .+.++++|+.+++||.....+ ..|..++.+|.-. + ...+.+|+|||+|+ .|.||-+.
T Consensus 170 ~~-d~S~l~~~p~t~~lliLS~es-~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvs 239 (248)
T PF06977_consen 170 VR-DLSGLSYDPRTGHLLILSDES-RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVS 239 (248)
T ss_dssp SS----EEEEETTTTEEEEEETTT-TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEE
T ss_pred ec-cccceEEcCCCCeEEEEECCC-CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEc
Confidence 44 789999999999999999998 7898888777631 2 23457999999998 68999986
No 20
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.67 E-value=6.9e-08 Score=64.23 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=37.8
Q ss_pred EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCe
Q psy950 26 KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKW 68 (407)
Q Consensus 26 ~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~ 68 (407)
+++..++..|.|||+||..++|||+|+.. ..|+|+++||+++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~-~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGL-DVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCC-CEEEEEeCCCCCC
Confidence 46677899999999999999999999997 4999999999864
No 21
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.5e-05 Score=79.35 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=155.0
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCC
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGG 109 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~ 109 (407)
...|.++++++...++|.++...+ .|...+++.......+..+. .|.++++|+.++.+|+++. ..++|..++-...
T Consensus 73 ~~~p~~i~v~~~~~~vyv~~~~~~-~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~ 150 (381)
T COG3391 73 GVYPAGVAVNPAGNKVYVTTGDSN-TVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN 150 (381)
T ss_pred CccccceeeCCCCCeEEEecCCCC-eEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence 367999999999999999988754 88888855554444443333 8999999999999999999 5799999988866
Q ss_pred eEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCC
Q psy950 110 NRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRT 187 (407)
Q Consensus 110 ~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~ 187 (407)
...........|.++++.. ..+|.++...+.|..++..+ . .+.. +. ....+
T Consensus 151 ~~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~--~----~v~~-----------------~~-~~~~~--- 203 (381)
T COG3391 151 KVTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSG--N----SVVR-----------------GS-VGSLV--- 203 (381)
T ss_pred eEEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCC--c----ceec-----------------cc-ccccc---
Confidence 6533344455889999976 67999997777776666332 1 0100 00 00000
Q ss_pred CcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCeeeeEeecCCcceEE
Q psy950 188 GNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVG 267 (407)
Q Consensus 188 ~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~a 267 (407)
.....+..
T Consensus 204 ------------------------------------------------------------------------~~~~~P~~ 211 (381)
T COG3391 204 ------------------------------------------------------------------------GVGTGPAG 211 (381)
T ss_pred ------------------------------------------------------------------------ccCCCCce
Confidence 00111233
Q ss_pred EEEEcCCCEEEEEEecC-CceEEEEeCCCCcccc---cCCC-CccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcccc-
Q psy950 268 VEFDYADDKILFTQIRP-WAKIAWIPTTNPSSAS---SNLT-NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS- 341 (407)
Q Consensus 268 ld~d~~~~~lywsd~~~-~~~I~~~~~~~~~~~~---~~~~-~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl~- 341 (407)
+.+++.++++|.++... ...+..++........ ..+. .+.+++++|.++.+|..+... +.+.+++........
T Consensus 212 i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~~ 290 (381)
T COG3391 212 IAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-GTVSVIDGATDRVVKT 290 (381)
T ss_pred EEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC-CeEEEEeCCCCceeee
Confidence 44555566666665543 1356666655543332 1221 589999999999999999987 899999987765421
Q ss_pred -----cCCCceeEEEEcCCCCeEEEEeC
Q psy950 342 -----SNLTNVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 342 -----~~l~~P~~iavdp~~g~lywtd~ 364 (407)
.-...|..++..+.....|-+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (381)
T COG3391 291 GPTGNEALGEPVSIAISPLYDTNYVSVK 318 (381)
T ss_pred ecccccccccceeccceeecccccceee
Confidence 23345888988888777777763
No 22
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.63 E-value=8.9e-05 Score=72.45 Aligned_cols=254 Identities=9% Similarity=0.042 Sum_probs=151.2
Q ss_pred CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---------CCCeEEEEecCCCeE
Q psy950 44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---------KLDLIQKISYNGGNR 111 (407)
Q Consensus 44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---------~~~~I~~~~~dG~~~ 111 (407)
..++|.+|... ..+|...+.+.....--+..+ ..|+++ +.+.++.||.+.. ..+.|..+|..-...
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 46688888752 147888877765554445544 489997 9999999999999 889999999865444
Q ss_pred -EEEc-------cCCCCceEEEEe--CCEEEEEeCC-CCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCC
Q psy950 112 -QIIR-------RNLPNPMGIAVH--KSDVYWVDRN-LRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDE 180 (407)
Q Consensus 112 -~~~~-------~~~~~P~~lav~--~~~lYwtd~~-~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~ 180 (407)
..+. .....|..+++. +.+||..++. .+.|..++... + .++. .+.-|-+-.+|
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~-----kvv~-ei~vp~~~~vy--------- 153 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-K-----AFVR-MMDVPDCYHIF--------- 153 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-C-----cEEE-EEeCCCCcEEE---------
Confidence 2222 124455566664 4689999988 78898899875 2 1221 01112222222
Q ss_pred CCCccCCCcccccccceecCCCCCCCCcceEEecCCCccc----cCCCCccc---------------cc-----c-eeee
Q psy950 181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS----ASDPKKCT---------------TM-----D-EYLV 235 (407)
Q Consensus 181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l----~~d~~~C~---------------~~-----~-~~Ll 235 (407)
..... ++.-.|..|-.+ +.+|+.-. .| + ..++
T Consensus 154 ----------------~t~e~-------~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 154 ----------------PTAND-------TFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred ----------------EecCC-------ccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 21111 122333333111 11111000 01 1 2334
Q ss_pred eecccceEEeecCCCCC--eeeeEeecC-----CcceEE---EEEEcCCCEEEEEEecC--------CceEEEEeCCCCc
Q psy950 236 FSTRTEIRALHLDPTLT--AVPFKTVSN-----LTNVVG---VEFDYADDKILFTQIRP--------WAKIAWIPTTNPS 297 (407)
Q Consensus 236 ~s~~~~I~~i~l~~~~~--~~~~~~~~~-----~~~~~a---ld~d~~~~~lywsd~~~--------~~~I~~~~~~~~~ 297 (407)
++....+..+.+..... ..++..+.. .-.+.+ +++++.++++|+..... -+.|..++..+..
T Consensus 211 vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 211 PTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred EecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 44445666666533211 111111110 011222 88999999999954221 1468888887766
Q ss_pred ccc--cCCCCccEEEEeccCC-eEEEEeCCCCCeEEEEECCCCcc
Q psy950 298 SAS--SNLTNVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNPSS 339 (407)
Q Consensus 298 ~~~--~~~~~~~glAvDwi~~-~LYwtd~~~~~~I~v~~~~~~~r 339 (407)
+.. .++..+++|++..-.+ .||-++... +.|.+++......
T Consensus 291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s-~~VsViD~~t~k~ 334 (352)
T TIGR02658 291 RLRKIELGHEIDSINVSQDAKPLLYALSTGD-KTLYIFDAETGKE 334 (352)
T ss_pred EEEEEeCCCceeeEEECCCCCeEEEEeCCCC-CcEEEEECcCCeE
Confidence 554 5666999999999999 999999888 8899999876643
No 23
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.61 E-value=3.3e-05 Score=76.62 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=93.4
Q ss_pred EEcC--CCCCcceEEEeCCCCEEEEEEcCC----------C-CeEEEEeC---CCCC-eEEEEeCCCCCceeEEEeCCCC
Q psy950 27 LKTS--FRSANTTSPFSPLPRLLYWIDYGQ----------Y-PRIGKSYL---DGSK-WTSIVSNGISMPRDLTIDMQTH 89 (407)
Q Consensus 27 l~~~--~~~~P~~iavdp~~g~lywtd~~~----------~-~~I~r~~~---dG~~-~~~l~~~~~~~P~glaiD~~~~ 89 (407)
++.+ .+.+|++||+|+. |.||.++... . .+|.+..- ||.- ...++..++..|+||++... +
T Consensus 6 l~A~~p~~~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G 83 (367)
T TIGR02604 6 LFAAEPLLRNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G 83 (367)
T ss_pred EEECCCccCCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C
Confidence 4444 3899999999988 8899998521 1 27777654 4543 33455567889999999874 4
Q ss_pred eEEEEeCCCCeEEEE-ecCCC-----eEEEEccC--------CCCceEEEEeC-CEEEEEeCCC----------------
Q psy950 90 DVYWVDAKLDLIQKI-SYNGG-----NRQIIRRN--------LPNPMGIAVHK-SDVYWVDRNL---------------- 138 (407)
Q Consensus 90 ~lYw~d~~~~~I~~~-~~dG~-----~~~~~~~~--------~~~P~~lav~~-~~lYwtd~~~---------------- 138 (407)
||+++. ..|.++ +.+|. .++++... ...|.++++.. ++||+++...
T Consensus 84 -lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~ 160 (367)
T TIGR02604 84 -VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ 160 (367)
T ss_pred -EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence 999874 467766 44442 34444421 22377899976 6999987732
Q ss_pred ---CeEEEEecCCCCCCcccEEcccCCCCceeeEEe
Q psy950 139 ---RTVYKASKLASTNITLPTPIRTGLSGLRDIAIF 171 (407)
Q Consensus 139 ---~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~ 171 (407)
+.|+|++.++ ...+++..++..|.++.+.
T Consensus 161 ~~~g~i~r~~pdg----~~~e~~a~G~rnp~Gl~~d 192 (367)
T TIGR02604 161 GLGGGLFRYNPDG----GKLRVVAHGFQNPYGHSVD 192 (367)
T ss_pred ccCceEEEEecCC----CeEEEEecCcCCCccceEC
Confidence 3688888775 2467778888888888774
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=0.00032 Score=66.88 Aligned_cols=293 Identities=10% Similarity=0.022 Sum_probs=174.5
Q ss_pred CEEEEEEcC--CCCeEEEEeCCCCCe-EEEEe--CCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCC-eEEEEc-
Q psy950 45 RLLYWIDYG--QYPRIGKSYLDGSKW-TSIVS--NGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGG-NRQIIR- 115 (407)
Q Consensus 45 g~lywtd~~--~~~~I~r~~~dG~~~-~~l~~--~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~-~~~~~~- 115 (407)
.++|..... ....|++.+||+..- ..+.. ..+..|.-|++++..++||.+... .+.|.....|+. .+-.+.
T Consensus 3 ~~~YiGtyT~~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 3 QTVYIGTYTKRESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred eEEEEeeecccCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 355665443 123899999994432 22221 357799999999999999999876 788888888864 332222
Q ss_pred ---cCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950 116 ---RNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG 190 (407)
Q Consensus 116 ---~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng 190 (407)
.....|--+++++ .+||.+....+.|.+......|.. ..++ + .+.|... +.++-+. .
T Consensus 83 ~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l--~~~v--------~-~~~h~g~----~p~~rQ~---~ 144 (346)
T COG2706 83 RQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL--QPVV--------Q-VVKHTGS----GPHERQE---S 144 (346)
T ss_pred ccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc--ccce--------e-eeecCCC----CCCcccc---C
Confidence 3456778999987 588888888886654443321211 1111 1 1122221 1111111 1
Q ss_pred cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecccceEEeecCCCCCee-eeEeecCCcceEEEE
Q psy950 191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAV-PFKTVSNLTNVVGVE 269 (407)
Q Consensus 191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~ald 269 (407)
.=.|.-..+|. +.|.|.|.-|. | .+.+ ..+++...+. ....+....-+.-|.
T Consensus 145 ~h~H~a~~tP~------~~~l~v~DLG~----D--------ri~~---------y~~~dg~L~~~~~~~v~~G~GPRHi~ 197 (346)
T COG2706 145 PHVHSANFTPD------GRYLVVPDLGT----D--------RIFL---------YDLDDGKLTPADPAEVKPGAGPRHIV 197 (346)
T ss_pred CccceeeeCCC------CCEEEEeecCC----c--------eEEE---------EEcccCccccccccccCCCCCcceEE
Confidence 11122222333 25677775542 1 1122 2222111100 000123334466789
Q ss_pred EEcCCCEEEEEEecCCceEEEEeCCCCcc-----c-----c----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950 270 FDYADDKILFTQIRPWAKIAWIPTTNPSS-----A-----S----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT 335 (407)
Q Consensus 270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~-----~-----~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~ 335 (407)
|++.++..|....-. ++|.....+.... + + +-. ....|.+...++.||-.|.+. ++|.++..+
T Consensus 198 FHpn~k~aY~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~-~~aaIhis~dGrFLYasNRg~-dsI~~f~V~ 274 (346)
T COG2706 198 FHPNGKYAYLVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTN-WAAAIHISPDGRFLYASNRGH-DSIAVFSVD 274 (346)
T ss_pred EcCCCcEEEEEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCC-ceeEEEECCCCCEEEEecCCC-CeEEEEEEc
Confidence 999999999998887 7888877766311 0 1 223 567899999999999999999 899888776
Q ss_pred CCc---cc----ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCcceeEEE
Q psy950 336 NPS---SA----SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTIL 387 (407)
Q Consensus 336 ~~~---rl----~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~~l~ 387 (407)
... ++ .+....||+..++|..++|+-+...+.. | .+...+..+..++.+.
T Consensus 275 ~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~-i-~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 275 PDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDN-I-TVFERDKETGRLTLLG 331 (346)
T ss_pred CCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCc-E-EEEEEcCCCceEEecc
Confidence 432 22 2355779999999999999998764433 2 2233455555555444
No 25
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.53 E-value=2.3e-07 Score=61.60 Aligned_cols=42 Identities=33% Similarity=0.699 Sum_probs=37.8
Q ss_pred EEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950 70 SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111 (407)
Q Consensus 70 ~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~ 111 (407)
+++..++..|+|||+|+.+++|||+|.....|++++++|.++
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~~ 43 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCCC
Confidence 455668889999999999999999999999999999999753
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.46 E-value=0.0014 Score=61.67 Aligned_cols=275 Identities=13% Similarity=0.072 Sum_probs=152.1
Q ss_pred CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI 124 (407)
Q Consensus 45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l 124 (407)
+.+|.+.... ..|.+.+++.......+. ....|.++++++.++.+|.+....+.|...+.++............|..+
T Consensus 1 ~~~~~s~~~d-~~v~~~d~~t~~~~~~~~-~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 78 (300)
T TIGR03866 1 EKAYVSNEKD-NTISVIDTATLEVTRTFP-VGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELF 78 (300)
T ss_pred CcEEEEecCC-CEEEEEECCCCceEEEEE-CCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEE
Confidence 3577777655 388888886444433343 23468899999988899999888889999998765442222223456677
Q ss_pred EEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCC
Q psy950 125 AVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVE 202 (407)
Q Consensus 125 av~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~ 202 (407)
++.+ +.+|.+....+.|...+... + ..+. .+.. ...+. .++
T Consensus 79 ~~~~~g~~l~~~~~~~~~l~~~d~~~-~-----~~~~----------~~~~------~~~~~---------~~~------ 121 (300)
T TIGR03866 79 ALHPNGKILYIANEDDNLVTVIDIET-R-----KVLA----------EIPV------GVEPE---------GMA------ 121 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCC-C-----eEEe----------EeeC------CCCcc---------eEE------
Confidence 7765 46777766566676666553 1 1110 0000 00000 000
Q ss_pred CCCCCcceEEecCCCccccCCCCcccccceeeeeeccc--ceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEE
Q psy950 203 FPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRT--EIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFT 280 (407)
Q Consensus 203 ~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~~--~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lyws 280 (407)
.+ +|+. +++++... .+..+.+.... . ...+.....+.++.+++.++.+|.+
T Consensus 122 ----------~~-------~dg~-------~l~~~~~~~~~~~~~d~~~~~--~-~~~~~~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 122 ----------VS-------PDGK-------IVVNTSETTNMAHFIDTKTYE--I-VDNVLVDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred ----------EC-------CCCC-------EEEEEecCCCeEEEEeCCCCe--E-EEEEEcCCCccEEEECCCCCEEEEE
Confidence 01 1111 01111110 11111111110 0 0001111234567788888888776
Q ss_pred EecCCceEEEEeCCCCcccc-------c---CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc--cccCCCcee
Q psy950 281 QIRPWAKIAWIPTTNPSSAS-------S---NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS--ASSNLTNVV 348 (407)
Q Consensus 281 d~~~~~~I~~~~~~~~~~~~-------~---~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r--l~~~l~~P~ 348 (407)
.... +.|...++.+..... + ....+.+++++.-++.+|.+.... ++|.+.++..... ....-..|.
T Consensus 175 ~~~~-~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~~~~~~ 252 (300)
T TIGR03866 175 SEIG-GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA-NRVAVVDAKTYEVLDYLLVGQRVW 252 (300)
T ss_pred cCCC-CEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC-CeEEEEECCCCcEEEEEEeCCCcc
Confidence 5545 667777776543221 1 011467899999999999988777 7899998875432 222335788
Q ss_pred EEEEcCCCCeEEEEeCCCCCcccccCCCCCC-CcceeEEEeCCC
Q psy950 349 GVEFDYADDKILFTQIRPWAKIAWIPTTNPS-SASVNTILSRGK 391 (407)
Q Consensus 349 ~iavdp~~g~lywtd~~~~~~ia~~dg~~~~-~~~~~~l~~~~~ 391 (407)
+++++|...+||-+. +....|.-+ +++ +..++.+...+.
T Consensus 253 ~~~~~~~g~~l~~~~-~~~~~i~v~---d~~~~~~~~~~~~~~~ 292 (300)
T TIGR03866 253 QLAFTPDEKYLLTTN-GVSNDVSVI---DVAALKVIKSIKVGRL 292 (300)
T ss_pred eEEECCCCCEEEEEc-CCCCeEEEE---ECCCCcEEEEEEcccc
Confidence 999999988888764 223344222 222 444566665444
No 27
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.44 E-value=9e-05 Score=72.44 Aligned_cols=260 Identities=14% Similarity=0.098 Sum_probs=142.7
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeC------CCCCceeEEEeC---CCCeEEEEeCCC----
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSN------GISMPRDLTIDM---QTHDVYWVDAKL---- 98 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~------~~~~P~glaiD~---~~~~lYw~d~~~---- 98 (407)
|++|++|++.|. |.||.++.. .+|.+...||.....+... +..-+.|||+|+ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~~--G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAERS--GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEETT--TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CCCceEEEEeCC-CcEEEEeCC--ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 478999999998 899999883 5999999888873333321 234578999999 468999987643
Q ss_pred ----CeEEEEecCCC-----eEEEEc----c--CCCC-ceEEEEeC-CEEEEEeCC-------------CCeEEEEecCC
Q psy950 99 ----DLIQKISYNGG-----NRQIIR----R--NLPN-PMGIAVHK-SDVYWVDRN-------------LRTVYKASKLA 148 (407)
Q Consensus 99 ----~~I~~~~~dG~-----~~~~~~----~--~~~~-P~~lav~~-~~lYwtd~~-------------~~~I~~~~~~~ 148 (407)
.+|.+..++.. ..+++. . ...| -.+|++.. ++||++-.. .++|.|++.++
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 57888887654 223333 1 2233 35677775 899998531 34799999876
Q ss_pred CC---C------CcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc--cccccceecCCCCCCCCcceEEe---c
Q psy950 149 ST---N------ITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG--GCEQLCFSYPVEFPQNKLHYKCD---C 214 (407)
Q Consensus 149 ~g---~------~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng--~Cs~lC~~~~~~~~~~~~~~~C~---C 214 (407)
+. + ....++++.++..|.+++.... . +.-.|.. || .=+.+.+..++.+- +-..|. +
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~-t----g~l~~~d--~G~~~~dein~i~~G~nY---GWP~~~~~~~ 227 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPN-T----GRLWAAD--NGPDGWDEINRIEPGGNY---GWPYCEGGPK 227 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETT-T----TEEEEEE--E-SSSSEEEEEE-TT-B-----TTTBSSSCS
T ss_pred cCCCCCccccCCCceEEEEEeCCCccccEEEECC-C----CcEEEEc--cCCCCCcEEEEeccCCcC---CCCCCcCCCC
Confidence 20 0 1245777888889998887532 1 1111211 11 11344444444310 001111 0
Q ss_pred CCCccccCCCCcccc-cceeeeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEE------cCCCEEEEEEecCCce
Q psy950 215 ATGTPSASDPKKCTT-MDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFD------YADDKILFTQIRPWAK 287 (407)
Q Consensus 215 ~~G~~l~~d~~~C~~-~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d------~~~~~lywsd~~~~~~ 287 (407)
..|... .+...|.. ..+...|... ..+.++.|- .-.+.+|+++... .+
T Consensus 228 ~~~~~~-~~~~~~~~~~~P~~~~~~~-----------------------~ap~G~~~y~g~~fp~~~g~~~~~~~~~-~~ 282 (331)
T PF07995_consen 228 YSGPPI-GDAPSCPGFVPPVFAYPPH-----------------------SAPTGIIFYRGSAFPEYRGDLFVADYGG-GR 282 (331)
T ss_dssp TTSS-E-CTGSS-TTS---SEEETTT-------------------------EEEEEEE-SSSSGGGTTEEEEEETTT-TE
T ss_pred CCCCcc-ccccCCCCcCccceeecCc-----------------------cccCceEEECCccCccccCcEEEecCCC-CE
Confidence 001100 00111111 1122222222 223333332 2356788888877 78
Q ss_pred EEEEeCCCCcccc-------cCCCCccEEEEeccCCeEEEEeCCCCCeEEE
Q psy950 288 IAWIPTTNPSSAS-------SNLTNVVGVEFDYADDKILFTQIRPWAKIAW 331 (407)
Q Consensus 288 I~~~~~~~~~~~~-------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v 331 (407)
|.++.++...... .....|.+|++++. +.||.++... ++|.+
T Consensus 283 i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d~~-G~iyR 331 (331)
T PF07995_consen 283 IWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDDSD-GKIYR 331 (331)
T ss_dssp EEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-TT-TTEEE
T ss_pred EEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEECCC-CeEeC
Confidence 8888876432211 34447899999996 8899998877 78864
No 28
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=0.0038 Score=59.68 Aligned_cols=266 Identities=9% Similarity=0.025 Sum_probs=159.9
Q ss_pred eeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCC-CeEEEEeCC---CCCceeEEEeCCCCeE
Q psy950 17 ALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGS-KWTSIVSNG---ISMPRDLTIDMQTHDV 91 (407)
Q Consensus 17 ~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~-~~~~l~~~~---~~~P~glaiD~~~~~l 91 (407)
+.-.|......+...+.+|.=|+++|..+.||-.... ....|.....|.. .+.+++... ...|.-+++|+.++.|
T Consensus 24 d~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~v 103 (346)
T COG2706 24 DTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFV 103 (346)
T ss_pred eCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEE
Confidence 3334444444555668899999999999999998764 3468888888875 676666532 2346999999999999
Q ss_pred EEEeCCCCeEEEEec--CCCeEEE---Ec--cC-------C--CCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCccc
Q psy950 92 YWVDAKLDLIQKISY--NGGNRQI---IR--RN-------L--PNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLP 155 (407)
Q Consensus 92 Yw~d~~~~~I~~~~~--dG~~~~~---~~--~~-------~--~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~ 155 (407)
|.+....+.|.+..+ ||.-... +. .. - .|+..++-++.+|...|-...+|...+... |.....
T Consensus 104 f~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~d-g~L~~~ 182 (346)
T COG2706 104 FVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDD-GKLTPA 182 (346)
T ss_pred EEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEccc-Cccccc
Confidence 999999999888776 4544322 22 11 2 233444445578999999888776655553 321111
Q ss_pred EEcc-cCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceee
Q psy950 156 TPIR-TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL 234 (407)
Q Consensus 156 ~~i~-~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~L 234 (407)
.... ..-.+|..|. ||+..+ =.-|.|.- + ....
T Consensus 183 ~~~~v~~G~GPRHi~-FHpn~k--------------------------------~aY~v~EL----~---------stV~ 216 (346)
T COG2706 183 DPAEVKPGAGPRHIV-FHPNGK--------------------------------YAYLVNEL----N---------STVD 216 (346)
T ss_pred cccccCCCCCcceEE-EcCCCc--------------------------------EEEEEecc----C---------CEEE
Confidence 0000 0012222221 222110 01122210 0 0011
Q ss_pred eeecc---cceEE---eecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeC--CCCcccc-----c
Q psy950 235 VFSTR---TEIRA---LHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT--TNPSSAS-----S 301 (407)
Q Consensus 235 l~s~~---~~I~~---i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~--~~~~~~~-----~ 301 (407)
++.-. .++.. ++.-+.+ ..+.....||-+.+.++.||.+|... +.|....+ +++.... .
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~d-------F~g~~~~aaIhis~dGrFLYasNRg~-dsI~~f~V~~~~g~L~~~~~~~t 288 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPED-------FTGTNWAAAIHISPDGRFLYASNRGH-DSIAVFSVDPDGGKLELVGITPT 288 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccc-------cCCCCceeEEEECCCCCEEEEecCCC-CeEEEEEEcCCCCEEEEEEEecc
Confidence 11111 11221 2222222 22345567889999999999999987 66655544 4332111 3
Q ss_pred CCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950 302 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS 338 (407)
Q Consensus 302 ~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~ 338 (407)
-+..|.+..++.-++.|+-+++.. +.|.++..+..+
T Consensus 289 eg~~PR~F~i~~~g~~Liaa~q~s-d~i~vf~~d~~T 324 (346)
T COG2706 289 EGQFPRDFNINPSGRFLIAANQKS-DNITVFERDKET 324 (346)
T ss_pred CCcCCccceeCCCCCEEEEEccCC-CcEEEEEEcCCC
Confidence 343699999999999999999999 889998877653
No 29
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.15 E-value=0.0001 Score=70.88 Aligned_cols=123 Identities=16% Similarity=0.106 Sum_probs=90.7
Q ss_pred eeeeec-CCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC---CCC--eE--EEEeCCCCCceeEEEeC
Q psy950 15 RLALRL-LKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD---GSK--WT--SIVSNGISMPRDLTIDM 86 (407)
Q Consensus 15 ~~~~~~-~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d---G~~--~~--~l~~~~~~~P~glaiD~ 86 (407)
.++..+ .+...+++...+..|-|||++|....||++|...+ +|+|.++| |.. +. +.....-+.|.|+++|.
T Consensus 144 ~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~-~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa 222 (307)
T COG3386 144 SLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN-RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA 222 (307)
T ss_pred eEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC-eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC
Confidence 345555 35556666666999999999999999999999876 99999998 321 22 22223346899999998
Q ss_pred CCCeEE-EEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeC---CEEEEEeCCCC
Q psy950 87 QTHDVY-WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHK---SDVYWVDRNLR 139 (407)
Q Consensus 87 ~~~~lY-w~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~---~~lYwtd~~~~ 139 (407)
.+.|| ++-.....|.+.+.+|.....+.-....|..+++-+ +.||.|....+
T Consensus 223 -dG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~ 278 (307)
T COG3386 223 -DGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSG 278 (307)
T ss_pred -CCCEEEecccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCC
Confidence 45666 344444599999999988866654457888889877 89999976653
No 30
>KOG4659|consensus
Probab=98.12 E-value=8.1e-05 Score=80.47 Aligned_cols=111 Identities=23% Similarity=0.274 Sum_probs=83.2
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEE------------------EeCCCCCceeEEEeCCCCeEEE
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSI------------------VSNGISMPRDLTIDMQTHDVYW 93 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l------------------~~~~~~~P~glaiD~~~~~lYw 93 (407)
+-.|+|||+|.. |.||++|.. .|...+-+|--.+.+ +...+.||+.|||||..+-||+
T Consensus 474 L~~PkGIa~dk~-g~lYfaD~t---~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~V 549 (1899)
T KOG4659|consen 474 LIFPKGIAFDKM-GNLYFADGT---RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLV 549 (1899)
T ss_pred eccCCceeEccC-CcEEEeccc---EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEE
Confidence 557999999965 999999863 677777665433322 2223679999999999999999
Q ss_pred EeCCCCeEEEEecCCCeEEEEc--------------------cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950 94 VDAKLDLIQKISYNGGNRQIIR--------------------RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 94 ~d~~~~~I~~~~~dG~~~~~~~--------------------~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~ 148 (407)
.|. +.|.+++.++.-+.+.. ..+..|.+|++-. +.||.++....+|-|+.+-+
T Consensus 550 ld~--nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~ 623 (1899)
T KOG4659|consen 550 LDT--NVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLS 623 (1899)
T ss_pred eec--ceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEec
Confidence 995 78888887776552221 1244568999866 99999999988888887765
No 31
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=98.01 E-value=0.00018 Score=71.39 Aligned_cols=130 Identities=18% Similarity=0.172 Sum_probs=92.5
Q ss_pred EEEEEeeeeecCCcc-eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEE-eCCCC-----CeEEEEeC-C------
Q psy950 10 LIWAIRLALRLLKKK-KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKS-YLDGS-----KWTSIVSN-G------ 75 (407)
Q Consensus 10 ~~~s~~~~~~~~~~~-~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~-~~dG~-----~~~~l~~~-~------ 75 (407)
.|+...-..-+|... ..++..++..|.||++++. | ||.++. ++|.|. +.+|. .+++|+.. .
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~-G-lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~ 122 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVG-G-VYVATP---PDILFLRDKDGDDKADGEREVLLSGFGGQINNH 122 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecC-C-EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcc
Confidence 344443333455543 4567778999999999876 5 999863 478877 55542 45556542 1
Q ss_pred CCCceeEEEeCCCCeEEEEeCCC-------------------CeEEEEecCCCeEEEEccCCCCceEEEEeC-CEEEEEe
Q psy950 76 ISMPRDLTIDMQTHDVYWVDAKL-------------------DLIQKISYNGGNRQIIRRNLPNPMGIAVHK-SDVYWVD 135 (407)
Q Consensus 76 ~~~P~glaiD~~~~~lYw~d~~~-------------------~~I~~~~~dG~~~~~~~~~~~~P~~lav~~-~~lYwtd 135 (407)
...|++|++++ .++||+++... +.|.+++.+|+..+++...+.+|.||++++ +.+|.+|
T Consensus 123 ~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 123 HHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEc
Confidence 23488999999 56999988721 579999999999988888899999999976 8899998
Q ss_pred CCCCeEEEEe
Q psy950 136 RNLRTVYKAS 145 (407)
Q Consensus 136 ~~~~~I~~~~ 145 (407)
-......+++
T Consensus 202 n~~~~~~~i~ 211 (367)
T TIGR02604 202 NDDPPLCRVT 211 (367)
T ss_pred cCCCceeEEc
Confidence 7555444443
No 32
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.94 E-value=6.5e-05 Score=58.30 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=58.4
Q ss_pred eEEEeCCCCEEEEEEcCC----------------CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCe
Q psy950 37 TSPFSPLPRLLYWIDYGQ----------------YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100 (407)
Q Consensus 37 ~iavdp~~g~lywtd~~~----------------~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~ 100 (407)
+|+|++..|.+||||... .+++.+.+......++|.. ++..|+|+++.+.+..|++++....+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~-~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD-GLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE-EESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh-CCCccCeEEEcCCCCEEEEEeccCce
Confidence 689999999999999632 3589999998887777776 79999999999999999999999999
Q ss_pred EEEEecCCC
Q psy950 101 IQKISYNGG 109 (407)
Q Consensus 101 I~~~~~dG~ 109 (407)
|.+.-+.|.
T Consensus 81 i~rywl~Gp 89 (89)
T PF03088_consen 81 ILRYWLKGP 89 (89)
T ss_dssp EEEEESSST
T ss_pred EEEEEEeCC
Confidence 999988873
No 33
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.00039 Score=66.97 Aligned_cols=114 Identities=16% Similarity=0.247 Sum_probs=85.3
Q ss_pred CCcceEEEeCCCCEEEEEEcC-----C-----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEE
Q psy950 33 SANTTSPFSPLPRLLYWIDYG-----Q-----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQ 102 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywtd~~-----~-----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~ 102 (407)
.+|-...+||. |.+|+++.+ . .+.++|.+-+|...+ ++...+..|+||++++.++.+|++|+..++|.
T Consensus 111 ~r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~-l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~ 188 (307)
T COG3386 111 NRPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR-LLDDDLTIPNGLAFSPDGKTLYVADTPANRIH 188 (307)
T ss_pred CCCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEE-eecCcEEecCceEECCCCCEEEEEeCCCCeEE
Confidence 45789999999 889999887 2 347899988655444 45445889999999999999999999999999
Q ss_pred EEecC---CC--e-E-EEEc-cCCCCceEEEEeCCEEEE--EeCCCCeEEEEecCC
Q psy950 103 KISYN---GG--N-R-QIIR-RNLPNPMGIAVHKSDVYW--VDRNLRTVYKASKLA 148 (407)
Q Consensus 103 ~~~~d---G~--~-~-~~~~-~~~~~P~~lav~~~~lYw--td~~~~~I~~~~~~~ 148 (407)
+.+++ |. + + .+.. ..-..|=|++++.+-.|| +-|....|.+.+.++
T Consensus 189 r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG 244 (307)
T COG3386 189 RYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDG 244 (307)
T ss_pred EEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCC
Confidence 99997 32 1 1 1222 345789999999855555 344444788777774
No 34
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.87 E-value=0.0038 Score=61.04 Aligned_cols=244 Identities=15% Similarity=0.161 Sum_probs=130.7
Q ss_pred CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-------cCCCCceEEEEeC-----CEEEEEeCCC-----
Q psy950 76 ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-------RNLPNPMGIAVHK-----SDVYWVDRNL----- 138 (407)
Q Consensus 76 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-------~~~~~P~~lav~~-----~~lYwtd~~~----- 138 (407)
|..|.+|++.+. ++||+++. .++|..++.+|.....+. .....+.||+++. ++||..-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 357999999996 89999998 999999998887622221 3456779999988 6777654421
Q ss_pred ---CeEEEEecCCC-CCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEec
Q psy950 139 ---RTVYKASKLAS-TNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDC 214 (407)
Q Consensus 139 ---~~I~~~~~~~~-g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C 214 (407)
.+|.|...... ......+++. ..-+.. ..+. .+++ . |-+.
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~----------~~~p~~------~~~~--H~g~-~-l~fg---------------- 122 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLV----------TGLPDT------SSGN--HNGG-G-LAFG---------------- 122 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEE----------EEEES-------CSSS--S-EE-E-EEE-----------------
T ss_pred CcceeeEEEeccCCccccccceEEE----------EEeCCC------CCCC--CCCc-c-ccCC----------------
Confidence 24555554430 0000111111 010100 0000 0111 0 1110
Q ss_pred CCCccccC--CCC---cccccceeeeeecccceEEeecCCCC-Ce---------eeeEeecCCcceEEEEEEcCCCEEEE
Q psy950 215 ATGTPSAS--DPK---KCTTMDEYLVFSTRTEIRALHLDPTL-TA---------VPFKTVSNLTNVVGVEFDYADDKILF 279 (407)
Q Consensus 215 ~~G~~l~~--d~~---~C~~~~~~Ll~s~~~~I~~i~l~~~~-~~---------~~~~~~~~~~~~~ald~d~~~~~lyw 279 (407)
|.|+..-. +.. .+..+. .....|.++..+... .. .......+++++.++++|+..+.||.
T Consensus 123 pDG~LYvs~G~~~~~~~~~~~~-----~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~ 197 (331)
T PF07995_consen 123 PDGKLYVSVGDGGNDDNAQDPN-----SLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWA 197 (331)
T ss_dssp TTSEEEEEEB-TTTGGGGCSTT-----SSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEE
T ss_pred CCCcEEEEeCCCCCcccccccc-----cccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEE
Confidence 11111100 000 011110 113456667665430 00 11223567999999999999999999
Q ss_pred EEecC--CceEEEEeCCCC---------c---------c-------cc----cCCCCccEEEEe------ccCCeEEEEe
Q psy950 280 TQIRP--WAKIAWIPTTNP---------S---------S-------AS----SNLTNVVGVEFD------YADDKILFTQ 322 (407)
Q Consensus 280 sd~~~--~~~I~~~~~~~~---------~---------~-------~~----~~~~~~~glAvD------wi~~~LYwtd 322 (407)
+|... ...|.++.-.+. . . .+ .-...|.||++= ...+.+++++
T Consensus 198 ~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~ 277 (331)
T PF07995_consen 198 ADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVAD 277 (331)
T ss_dssp EEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEE
T ss_pred EccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCCCcCccceeecCccccCceEEECCccCccccCcEEEec
Confidence 99764 245665532110 0 0 00 111278888875 3466799999
Q ss_pred CCCCCeEEEEECCCCcc------cccCCC-ceeEEEEcCCCCeEEEEeC
Q psy950 323 IRPWAKIAWIPTTNPSS------ASSNLT-NVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 323 ~~~~~~I~v~~~~~~~r------l~~~l~-~P~~iavdp~~g~lywtd~ 364 (407)
... .+|.++.++.... +..... +|++|+++|- |.||.++-
T Consensus 278 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pD-G~Lyv~~d 324 (331)
T PF07995_consen 278 YGG-GRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPD-GALYVSDD 324 (331)
T ss_dssp TTT-TEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETT-SEEEEEE-
T ss_pred CCC-CEEEEEeeecCCCccceEEccccCCCCceEEEEcCC-CeEEEEEC
Confidence 988 8999999874422 345565 9999999995 99999975
No 35
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=97.74 E-value=2.1e-05 Score=45.03 Aligned_cols=22 Identities=27% Similarity=0.838 Sum_probs=19.9
Q ss_pred ceEEecCCCccccCCCCccccc
Q psy950 209 HYKCDCATGTPSASDPKKCTTM 230 (407)
Q Consensus 209 ~~~C~C~~G~~l~~d~~~C~~~ 230 (407)
+|+|.|+.||.|.+|+++|.+.
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DI 22 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDI 22 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccC
Confidence 4899999999999999999854
No 36
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.021 Score=53.61 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=126.3
Q ss_pred CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc-cCCCCceEEEEeCCEEE-EEeCCCCeEEEEecCCCCCCccc
Q psy950 78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR-RNLPNPMGIAVHKSDVY-WVDRNLRTVYKASKLASTNITLP 155 (407)
Q Consensus 78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~-~~~~~P~~lav~~~~lY-wtd~~~~~I~~~~~~~~g~~~~~ 155 (407)
...+|+.++.++.||-+-.....|.-++.+|.-.+++. ..+..|-+|++-++-.| .+|-+...++....+. +.
T Consensus 87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~-----~t 161 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA-----DT 161 (316)
T ss_pred cccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC-----Cc
Confidence 47799999999999999988889999999998876654 67899999998885444 5555555554444332 00
Q ss_pred EEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeee
Q psy950 156 TPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLV 235 (407)
Q Consensus 156 ~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll 235 (407)
+++.. + .|
T Consensus 162 ~~~~~--------~-----~~----------------------------------------------------------- 169 (316)
T COG3204 162 TVISA--------K-----VQ----------------------------------------------------------- 169 (316)
T ss_pred cEEec--------c-----ce-----------------------------------------------------------
Confidence 11100 0 00
Q ss_pred eecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCccc--------c----cCC
Q psy950 236 FSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA--------S----SNL 303 (407)
Q Consensus 236 ~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~--------~----~~~ 303 (407)
+++|..... ......|++||+.++++|++-....-.|+.+...-.... . -+.
T Consensus 170 --------~i~L~~~~k--------~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~ 233 (316)
T COG3204 170 --------KIPLGTTNK--------KNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVL 233 (316)
T ss_pred --------EEeccccCC--------CCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEee
Confidence 111111100 011235789999999999986643256777664321110 0 134
Q ss_pred CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc----------c-cccCCCceeEEEEcCCCCeEEEEe
Q psy950 304 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS----------S-ASSNLTNVVGVEFDYADDKILFTQ 363 (407)
Q Consensus 304 ~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~----------r-l~~~l~~P~~iavdp~~g~lywtd 363 (407)
.+.|+.+|..+++|+.-..++ +.+..++.+|.. . +.++..+|+|||.|. .|.||-+-
T Consensus 234 -DvSgl~~~~~~~~LLVLS~ES-r~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd-~g~lYIvS 301 (316)
T COG3204 234 -DVSGLEFNAITNSLLVLSDES-RRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDD-DGNLYIVS 301 (316)
T ss_pred -ccccceecCCCCcEEEEecCC-ceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECC-CCCEEEEe
Confidence 678999999999999998887 666666666653 2 456788999999998 57888874
No 37
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.55 E-value=0.0016 Score=60.65 Aligned_cols=101 Identities=16% Similarity=0.192 Sum_probs=65.2
Q ss_pred cceEEEeCCCCEEEEEEcCCCCeEEEEeC--CCCCeEEEEe-------CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEe
Q psy950 35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYL--DGSKWTSIVS-------NGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~~~~~I~r~~~--dG~~~~~l~~-------~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~ 105 (407)
-.|||.||.++.||.+--..--+|+.... .+....+... ..+..|.+|++|+.+++||........|..++
T Consensus 120 ~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 120 FEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp -EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-
T ss_pred eEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC
Confidence 58999999999999885443226777776 3333332221 13557999999999999999999999999999
Q ss_pred cCCCeEEEEc---------cCCCCceEEEEeC-CEEEEEe
Q psy950 106 YNGGNRQIIR---------RNLPNPMGIAVHK-SDVYWVD 135 (407)
Q Consensus 106 ~dG~~~~~~~---------~~~~~P~~lav~~-~~lYwtd 135 (407)
.+|.-...+. ..+++|-|||+++ +.||.+.
T Consensus 200 ~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 200 RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 9998765442 2468999999998 8999875
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=97.48 E-value=0.024 Score=54.25 Aligned_cols=88 Identities=16% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCCEEEEEEecCCceEEEEeCC----CC--ccc------ccCC---CCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950 273 ADDKILFTQIRPWAKIAWIPTT----NP--SSA------SSNL---TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP 337 (407)
Q Consensus 273 ~~~~lywsd~~~~~~I~~~~~~----~~--~~~------~~~~---~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~ 337 (407)
.++.|||.-..+ .+++++... .. ... ..++ ....|+++|. .++||+++-.. +.|.+.+.++.
T Consensus 141 d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~~-~aI~~w~~~~~ 217 (287)
T PF03022_consen 141 DGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVEQ-NAIGCWDPDGP 217 (287)
T ss_dssp TS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECCC-TEEEEEETTTS
T ss_pred CccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCCC-CeEEEEeCCCC
Confidence 457899988777 778887642 11 111 1222 2568999999 99999999999 99999999884
Q ss_pred c-----c-cc---cCCCceeEEEEcC-CCCeEEEEe
Q psy950 338 S-----S-AS---SNLTNVVGVEFDY-ADDKILFTQ 363 (407)
Q Consensus 338 ~-----r-l~---~~l~~P~~iavdp-~~g~lywtd 363 (407)
. . +. +.+..|-++++++ ..|+||...
T Consensus 218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 218 YTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp B-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred cCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 2 2 33 2489999999998 578998885
No 39
>KOG1520|consensus
Probab=97.41 E-value=0.0012 Score=64.03 Aligned_cols=114 Identities=18% Similarity=0.109 Sum_probs=83.1
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCC----CCCceeEEEeCCCCeEEEEeCCC----CeEEE
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNG----ISMPRDLTIDMQTHDVYWVDAKL----DLIQK 103 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~----~~~P~glaiD~~~~~lYw~d~~~----~~I~~ 103 (407)
-.+|.||+.+...|.||.+|.-- -+..++.+|.-.+.+..+- +...++|.||+ ++.|||+|+.. ..+.-
T Consensus 114 CGRPLGl~f~~~ggdL~VaDAYl--GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~ 190 (376)
T KOG1520|consen 114 CGRPLGIRFDKKGGDLYVADAYL--GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVF 190 (376)
T ss_pred cCCcceEEeccCCCeEEEEecce--eeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEE
Confidence 36899999999999999999753 6788888877755555432 33578999999 99999999754 11222
Q ss_pred EecCC-------------CeEEEEccCCCCceEEEEeC--CEEEEEeCCCCeEEEEecCC
Q psy950 104 ISYNG-------------GNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 104 ~~~dG-------------~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~I~~~~~~~ 148 (407)
+-+.| ...++++.++.=|.|+++.. +++.+++....+|.|.-..+
T Consensus 191 a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g 250 (376)
T KOG1520|consen 191 AALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKG 250 (376)
T ss_pred eeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecC
Confidence 22322 22245668899999999855 78889988887887766654
No 40
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=97.39 E-value=0.00017 Score=47.82 Aligned_cols=39 Identities=26% Similarity=0.662 Sum_probs=31.9
Q ss_pred CCCccCCCccccc--ccceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950 181 NNPCFRTGNGGCE--QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227 (407)
Q Consensus 181 ~n~C~~~~ng~Cs--~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C 227 (407)
.|+|.. ....|. +.|+++.+ +|.|.|+.||.+..++++|
T Consensus 2 idEC~~-~~~~C~~~~~C~N~~G-------sy~C~C~~Gy~~~~~~~~C 42 (42)
T PF07645_consen 2 IDECAE-GPHNCPENGTCVNTEG-------SYSCSCPPGYELNDDGTTC 42 (42)
T ss_dssp SSTTTT-TSSSSSTTSEEEEETT-------EEEEEESTTEEECTTSSEE
T ss_pred ccccCC-CCCcCCCCCEEEcCCC-------CEEeeCCCCcEECCCCCcC
Confidence 477876 556786 89999987 6999999999977777766
No 41
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=97.18 E-value=0.003 Score=49.05 Aligned_cols=69 Identities=19% Similarity=0.239 Sum_probs=54.3
Q ss_pred eeEEEeCCCCeEEEEeCC-----------------CCeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCCe
Q psy950 80 RDLTIDMQTHDVYWVDAK-----------------LDLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLRT 140 (407)
Q Consensus 80 ~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~~ 140 (407)
++|+|+..++.|||+|+. .+++.+.+......+++...+..|.||++.. +.|++++....+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R 80 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR 80 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence 479999988999999973 3588998888888889999999999999976 689999999889
Q ss_pred EEEEecCC
Q psy950 141 VYKASKLA 148 (407)
Q Consensus 141 I~~~~~~~ 148 (407)
|.|.-..+
T Consensus 81 i~rywl~G 88 (89)
T PF03088_consen 81 ILRYWLKG 88 (89)
T ss_dssp EEEEESSS
T ss_pred EEEEEEeC
Confidence 98876553
No 42
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.14 E-value=0.3 Score=47.93 Aligned_cols=95 Identities=8% Similarity=0.057 Sum_probs=63.6
Q ss_pred EEcCCCEEEEEEecCCceEEEEeCCCCcccc-------cC-----CCCccE---EEEeccCCeEEEEeCCC--------C
Q psy950 270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS-------SN-----LTNVVG---VEFDYADDKILFTQIRP--------W 326 (407)
Q Consensus 270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-------~~-----~~~~~g---lAvDwi~~~LYwtd~~~--------~ 326 (407)
|...+++.+|...+ +.|+.+++.+..... .. +-.|.| +|++.-++.||....+. .
T Consensus 201 ~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 201 YSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 34435566666555 468888876543221 11 113444 99999999999964222 1
Q ss_pred CeEEEEECCCCccccc--CCCceeEEEEcCCCC-eEEEEeCCC
Q psy950 327 AKIAWIPTTNPSSASS--NLTNVVGVEFDYADD-KILFTQIRP 366 (407)
Q Consensus 327 ~~I~v~~~~~~~rl~~--~l~~P~~iavdp~~g-~lywtd~~~ 366 (407)
++|.+++.....++.. --..|.+|++.|-.. +||-+++.+
T Consensus 279 ~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s 321 (352)
T TIGR02658 279 RFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGD 321 (352)
T ss_pred CEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCC
Confidence 4799999888766432 347999999999999 888888643
No 43
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.13 E-value=0.23 Score=46.41 Aligned_cols=246 Identities=13% Similarity=0.096 Sum_probs=152.2
Q ss_pred CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE-EEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCc
Q psy950 76 ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNIT 153 (407)
Q Consensus 76 ~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~ 153 (407)
-..|..++.++ .+-+.+++...+.|-..|..-... +.-+....+|++|.+.+ +..+.+|... .|.|++..+ .
T Consensus 61 G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt-~--- 134 (353)
T COG4257 61 GSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKT-L--- 134 (353)
T ss_pred CCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcc-c---
Confidence 34788899988 577899999999999988764444 44457889999999988 6788888776 888888654 1
Q ss_pred ccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCccccccee
Q psy950 154 LPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233 (407)
Q Consensus 154 ~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~ 233 (407)
..+.. .-| ...+ +++-++. .++++|+
T Consensus 135 evt~f----~lp--------------~~~a-----~~nlet~-----------------------vfD~~G~-------- 160 (353)
T COG4257 135 EVTRF----PLP--------------LEHA-----DANLETA-----------------------VFDPWGN-------- 160 (353)
T ss_pred ceEEe----ecc--------------cccC-----CCcccce-----------------------eeCCCcc--------
Confidence 11111 111 0000 1111111 1233333
Q ss_pred eeeecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCC--cccc---cCCCCccE
Q psy950 234 LVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP--SSAS---SNLTNVVG 308 (407)
Q Consensus 234 Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~--~~~~---~~~~~~~g 308 (407)
|-|+.+..+.+ .|++......+.+......+.+|...+ ++.+|++.... +-|.+++-... ++.+ .+......
T Consensus 161 lWFt~q~G~yG-rLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyaslag-naiaridp~~~~aev~p~P~~~~~gsRr 237 (353)
T COG4257 161 LWFTGQIGAYG-RLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLAG-NAIARIDPFAGHAEVVPQPNALKAGSRR 237 (353)
T ss_pred EEEeeccccce-ecCcccCceeeeccCCCCCCcceEECC-CCcEEEEeccc-cceEEcccccCCcceecCCCcccccccc
Confidence 55666555554 455543333334455566677776664 45678887777 67888764332 1221 33335667
Q ss_pred EEEeccCCeEEEEeCCCCCeEEEEECCCCc----ccccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCCCCCCCccee
Q psy950 309 VEFDYADDKILFTQIRPWAKIAWIPTTNPS----SASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVN 384 (407)
Q Consensus 309 lAvDwi~~~LYwtd~~~~~~I~v~~~~~~~----rl~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg~~~~~~~~~ 384 (407)
+-.|.+++ +.-|+++. +++.+++....+ ++-..-.+|.++-||- +|++...||...+ |-+.|+.....+
T Consensus 238 iwsdpig~-~wittwg~-g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~aga----i~rfdpeta~ft 310 (353)
T COG4257 238 IWSDPIGR-AWITTWGT-GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADAGA----IGRFDPETARFT 310 (353)
T ss_pred cccCccCc-EEEeccCC-ceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeeccccCc----eeecCcccceEE
Confidence 77888865 66677777 788888776653 2444557999999996 5778777886544 345666666666
Q ss_pred EEEeCCC
Q psy950 385 TILSRGK 391 (407)
Q Consensus 385 ~l~~~~~ 391 (407)
++-.+..
T Consensus 311 v~p~pr~ 317 (353)
T COG4257 311 VLPIPRP 317 (353)
T ss_pred EecCCCC
Confidence 5554443
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=97.10 E-value=0.045 Score=55.42 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=93.4
Q ss_pred cceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE------e-CCCCCceeEEEeCC------CC
Q psy950 23 KKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV------S-NGISMPRDLTIDMQ------TH 89 (407)
Q Consensus 23 ~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~------~-~~~~~P~glaiD~~------~~ 89 (407)
.+..++..+|+.|++|++.|. |.||.++... .+|.+.+-++...+.+. . .+..-+.|||+++. ++
T Consensus 20 f~~~~va~GL~~Pw~maflPD-G~llVtER~~-G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~ 97 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGPD-NQLWVTERAT-GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNP 97 (454)
T ss_pred cEEEEEECCCCCceEEEEcCC-CeEEEEEecC-CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCc
Confidence 345567789999999999997 7899998743 48888876554333221 1 13456789999954 56
Q ss_pred eEEEEeCC---------CCeEEEEecCCC-----eEEEEccCC----CCc-eEEEEeC-CEEEEEeCCC-----------
Q psy950 90 DVYWVDAK---------LDLIQKISYNGG-----NRQIIRRNL----PNP-MGIAVHK-SDVYWVDRNL----------- 138 (407)
Q Consensus 90 ~lYw~d~~---------~~~I~~~~~dG~-----~~~~~~~~~----~~P-~~lav~~-~~lYwtd~~~----------- 138 (407)
.||++-+. ..+|.+..++.. ..+++...+ .|- -.|++.. ++||++-...
T Consensus 98 ~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~ 177 (454)
T TIGR03606 98 YVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLP 177 (454)
T ss_pred EEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCc
Confidence 89998522 467888888632 123333222 233 3555544 7899974332
Q ss_pred ---------------------CeEEEEecCCCC---C----CcccEEcccCCCCceeeEEe
Q psy950 139 ---------------------RTVYKASKLAST---N----ITLPTPIRTGLSGLRDIAIF 171 (407)
Q Consensus 139 ---------------------~~I~~~~~~~~g---~----~~~~~~i~~~~~~p~~i~i~ 171 (407)
++|.|++.+++. + ....++...++..|.++++.
T Consensus 178 ~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~d 238 (454)
T TIGR03606 178 NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFT 238 (454)
T ss_pred chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEEC
Confidence 268888877521 1 11245667777777777764
No 45
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.09 E-value=0.36 Score=47.94 Aligned_cols=317 Identities=13% Similarity=0.051 Sum_probs=150.4
Q ss_pred EeeeeecCCcceEEE--cCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeE
Q psy950 14 IRLALRLLKKKKKLK--TSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDV 91 (407)
Q Consensus 14 ~~~~~~~~~~~~~l~--~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~l 91 (407)
.++..+|+...+++- ..+-.-+.++++.|..+++|.++.. +.|...++.-.....-+..+. .|.|+++.+.++.|
T Consensus 16 ~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rd--g~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 16 GSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRD--GTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYV 92 (369)
T ss_dssp TEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETT--SEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEE
T ss_pred CEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCC--CeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEE
Confidence 356777776554432 2222225667888989999999753 589999987655443444443 79999999999999
Q ss_pred EEEeCCCCeEEEEecCCCeE-EEEc-c----CCCCce--EEEEeC--CEEEEEeCCCCeEEEEecCCCCCCcccEEcccC
Q psy950 92 YWVDAKLDLIQKISYNGGNR-QIIR-R----NLPNPM--GIAVHK--SDVYWVDRNLRTVYKASKLASTNITLPTPIRTG 161 (407)
Q Consensus 92 Yw~d~~~~~I~~~~~dG~~~-~~~~-~----~~~~P~--~lav~~--~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~ 161 (407)
|.++...+.+..+|...... +.+. . ....+. +|.... ...+++-...+.|..++... .+....+.+. -
T Consensus 93 ~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d-~~~~~~~~i~-~ 170 (369)
T PF02239_consen 93 YVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD-PKNLKVTTIK-V 170 (369)
T ss_dssp EEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT-SSCEEEEEEE--
T ss_pred EEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc-ccccceeeec-c
Confidence 99999999999988765443 3332 1 112233 443322 34555667778888887654 1111111111 1
Q ss_pred CCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcc-cccceeeeeeccc
Q psy950 162 LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC-TTMDEYLVFSTRT 240 (407)
Q Consensus 162 ~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C-~~~~~~Ll~s~~~ 240 (407)
-..|.+..+....+. ... ......++.+..... .........|..-.+-.... ..+..=.+++...
T Consensus 171 g~~~~D~~~dpdgry-------~~v-a~~~sn~i~viD~~~-----~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRY-------FLV-AANGSNKIAVIDTKT-----GKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp -TTEEEEEE-TTSSE-------EEE-EEGGGTEEEEEETTT-----TEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cccccccccCcccce-------eee-cccccceeEEEeecc-----ceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 133444433321111 000 011122232222111 12233332222111100000 0111111222211
Q ss_pred -c---eEEeecCCC-----CCeeeeEeecCCcceEEEEEEcCCCEEEEE---EecCCceEEEEeCCCCcccc----cCCC
Q psy950 241 -E---IRALHLDPT-----LTAVPFKTVSNLTNVVGVEFDYADDKILFT---QIRPWAKIAWIPTTNPSSAS----SNLT 304 (407)
Q Consensus 241 -~---I~~i~l~~~-----~~~~~~~~~~~~~~~~ald~d~~~~~lyws---d~~~~~~I~~~~~~~~~~~~----~~~~ 304 (407)
. +-.+.-++. ..-..+..+.....+..+..++...++|.. +... ..|..++........ .-+.
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~-~~v~viD~~tl~~~~~i~~~~~~ 316 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDA-DTVQVIDKKTLKVVKTITPGPGK 316 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSH-T-EEEEECCGTEEEE-HHHHHT-
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCC-ceEEEEECcCcceeEEEeccCCC
Confidence 1 111111111 111122233333334667888998988776 2333 679999988765443 1112
Q ss_pred CccEEEEeccCCeEEEEeCCCCC-eEEEEECCCCccccc-CCCceeEE
Q psy950 305 NVVGVEFDYADDKILFTQIRPWA-KIAWIPTTNPSSASS-NLTNVVGV 350 (407)
Q Consensus 305 ~~~glAvDwi~~~LYwtd~~~~~-~I~v~~~~~~~rl~~-~l~~P~~i 350 (407)
.+..+.+..-++.+|.+.+.. + +|.+++......+.+ .+..|.|+
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~-~~~i~v~D~~Tl~~~~~i~~~tP~G~ 363 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDG-NGAIVVYDAKTLKEKKRIPVPTPTGK 363 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE---TTEEEEEETTTTEEEEEEE--SEEEE
T ss_pred cEeccEECCCCCEEEEEEecC-CCEEEEEECCCcEEEEEEEeeCCCeE
Confidence 488999999999999999988 6 899998777653211 27777775
No 46
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.07 E-value=0.38 Score=47.79 Aligned_cols=102 Identities=19% Similarity=0.148 Sum_probs=67.5
Q ss_pred CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEE
Q psy950 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGI 124 (407)
Q Consensus 45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~l 124 (407)
..+|.++.+.. ++...+.+......-+..+..-+.+++..+.++.+|.+.. .+.|..+|+.-....--......|.++
T Consensus 6 ~l~~V~~~~~~-~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSG-SVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGT-EEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred cEEEEEecCCC-EEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecCCCcceE
Confidence 35567787765 7777665544433334433323456788888899999975 689999999765542222456789999
Q ss_pred EEe--CCEEEEEeCCCCeEEEEecCC
Q psy950 125 AVH--KSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 125 av~--~~~lYwtd~~~~~I~~~~~~~ 148 (407)
++. +.++|.+.+..+.+...+..+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT
T ss_pred EEcCCCCEEEEEecCCCceeEecccc
Confidence 985 479999999888888888664
No 47
>KOG1520|consensus
Probab=96.93 E-value=0.0055 Score=59.53 Aligned_cols=128 Identities=12% Similarity=0.146 Sum_probs=85.8
Q ss_pred ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------cCCCCccEEEEeccCCeEEEEeCCCC---------
Q psy950 264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--------SNLTNVVGVEFDYADDKILFTQIRPW--------- 326 (407)
Q Consensus 264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--------~~~~~~~glAvDwi~~~LYwtd~~~~--------- 326 (407)
+|.+|.|+..++.+|++|..- + +..++..|..... .+. -..++.||. ++.|||||++..
T Consensus 116 RPLGl~f~~~ggdL~VaDAYl-G-L~~V~p~g~~a~~l~~~~~G~~~k-f~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a 191 (376)
T KOG1520|consen 116 RPLGIRFDKKGGDLYVADAYL-G-LLKVGPEGGLAELLADEAEGKPFK-FLNDLDIDP-EGVVYFTDSSSKYDRRDFVFA 191 (376)
T ss_pred CcceEEeccCCCeEEEEecce-e-eEEECCCCCcceeccccccCeeee-ecCceeEcC-CCeEEEeccccccchhheEEe
Confidence 467999999999999999887 5 7777776654221 122 567899999 999999999862
Q ss_pred -------CeEEEEECCCCc--ccccCCCceeEEEEcCCCCeEEEEeCCCCCcc--cccCCCCCCCcceeEEE-eCCCccc
Q psy950 327 -------AKIAWIPTTNPS--SASSNLTNVVGVEFDYADDKILFTQIRPWAKI--AWIPTTNPSSASVNTIL-SRGKDEK 394 (407)
Q Consensus 327 -------~~I~v~~~~~~~--rl~~~l~~P~~iavdp~~g~lywtd~~~~~~i--a~~dg~~~~~~~~~~l~-~~~~~~~ 394 (407)
+++...+..... .+.++|.-|.|+++-|...++-+++.. ..+| =|+.|.+.-++.+= .. .||--+|
T Consensus 192 ~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvF-a~~LPG~PDN 269 (376)
T KOG1520|consen 192 ALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVF-AEGLPGYPDN 269 (376)
T ss_pred eecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhH-hhcCCCCCcc
Confidence 222222222111 156899999999999999999999852 2334 46666665444221 22 4555555
Q ss_pred eee
Q psy950 395 AKI 397 (407)
Q Consensus 395 ~~~ 397 (407)
+..
T Consensus 270 IR~ 272 (376)
T KOG1520|consen 270 IRR 272 (376)
T ss_pred eeE
Confidence 543
No 48
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=96.79 E-value=0.003 Score=37.75 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCceeEEEeCCCCeEEEEeCCCCeEEE
Q psy950 77 SMPRDLTIDMQTHDVYWVDAKLDLIQK 103 (407)
Q Consensus 77 ~~P~glaiD~~~~~lYw~d~~~~~I~~ 103 (407)
..|.||++| .++.||++|...++|..
T Consensus 2 ~~P~gvav~-~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 2 NYPHGVAVD-SDGNIYVADSGNHRVQV 27 (28)
T ss_dssp SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence 579999999 68999999999999875
No 49
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=96.65 E-value=0.0013 Score=60.52 Aligned_cols=39 Identities=31% Similarity=0.602 Sum_probs=33.6
Q ss_pred CCCCccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCc
Q psy950 180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKK 226 (407)
Q Consensus 180 ~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~ 226 (407)
..++|.. .++.|.|.|.+.++ +|.|.|+.||.|.+|+++
T Consensus 186 ~~~~C~~-~~~~c~~~C~~~~g-------~~~c~c~~g~~~~~~~~~ 224 (224)
T cd01475 186 VPDLCAT-LSHVCQQVCISTPG-------SYLCACTEGYALLEDNKT 224 (224)
T ss_pred CchhhcC-CCCCccceEEcCCC-------CEEeECCCCccCCCCCCC
Confidence 5688987 67899999999887 599999999999888764
No 50
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.57 E-value=0.67 Score=43.40 Aligned_cols=261 Identities=12% Similarity=0.119 Sum_probs=141.4
Q ss_pred CCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCC
Q psy950 30 SFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG 108 (407)
Q Consensus 30 ~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG 108 (407)
..-..|+.+|.+|. |-+++++.++. .|-+-+-- |+..++-+- .-..|++|.+++. +...++|... .|.+++-.-
T Consensus 59 p~G~ap~dvapapd-G~VWft~qg~g-aiGhLdP~tGev~~ypLg-~Ga~Phgiv~gpd-g~~Witd~~~-aI~R~dpkt 133 (353)
T COG4257 59 PNGSAPFDVAPAPD-GAVWFTAQGTG-AIGHLDPATGEVETYPLG-SGASPHGIVVGPD-GSAWITDTGL-AIGRLDPKT 133 (353)
T ss_pred CCCCCccccccCCC-CceEEecCccc-cceecCCCCCceEEEecC-CCCCCceEEECCC-CCeeEecCcc-eeEEecCcc
Confidence 34457999999988 88888888764 77776644 333333333 2358999999994 6678889877 888876533
Q ss_pred CeEEEEccCCCCc----eEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCC
Q psy950 109 GNRQIIRRNLPNP----MGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP 183 (407)
Q Consensus 109 ~~~~~~~~~~~~P----~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~ 183 (407)
...+.+.-...++ ....+++ +.|+||... +.--|.+-.. ..|+||. .|+ +
T Consensus 134 ~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-----------------~~i~vfp---aPq-G--- 188 (353)
T COG4257 134 LEVTRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-----------------NVISVFP---APQ-G--- 188 (353)
T ss_pred cceEEeecccccCCCcccceeeCCCccEEEeecc-ccceecCccc-----------------Cceeeec---cCC-C---
Confidence 3333332112222 2223444 788888652 1111222111 1244552 121 1
Q ss_pred ccCCCcccccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeee--cccceEEeecCCCCCeeeeE-e--
Q psy950 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFS--TRTEIRALHLDPTLTAVPFK-T-- 258 (407)
Q Consensus 184 C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s--~~~~I~~i~l~~~~~~~~~~-~-- 258 (407)
++-.-+| .-|.| . +.|+ ..+.|-+|..-.. +...++ |
T Consensus 189 ------~gpyGi~----------------atpdG-------s--------vwyaslagnaiaridp~~~-~aev~p~P~~ 230 (353)
T COG4257 189 ------GGPYGIC----------------ATPDG-------S--------VWYASLAGNAIARIDPFAG-HAEVVPQPNA 230 (353)
T ss_pred ------CCCcceE----------------ECCCC-------c--------EEEEeccccceEEcccccC-CcceecCCCc
Confidence 1111222 22222 1 3333 3344555432221 111111 1
Q ss_pred -ecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcc----cccCCCCccEEEEeccCCeEEEE-eCCCCCeEEEE
Q psy950 259 -VSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS----ASSNLTNVVGVEFDYADDKILFT-QIRPWAKIAWI 332 (407)
Q Consensus 259 -~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~----~~~~~~~~~glAvDwi~~~LYwt-d~~~~~~I~v~ 332 (407)
....+. +--| ..+++..++... ..+++++=....- +.+.+-+++.|-||--. ..|. |... +.|.++
T Consensus 231 ~~~gsRr---iwsd-pig~~wittwg~-g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g--rVW~sea~a-gai~rf 302 (353)
T COG4257 231 LKAGSRR---IWSD-PIGRAWITTWGT-GSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG--RVWLSEADA-GAIGRF 302 (353)
T ss_pred ccccccc---cccC-ccCcEEEeccCC-ceeeEeCcccccceeeeCCCCCCCcceeeeccCC--cEEeecccc-Cceeec
Confidence 111111 2223 234555556555 6677765433222 22555589999999543 3555 7777 889888
Q ss_pred ECCCCc-c-cccCCCceeEEEEcCCCCeEEEEeCCC
Q psy950 333 PTTNPS-S-ASSNLTNVVGVEFDYADDKILFTQIRP 366 (407)
Q Consensus 333 ~~~~~~-r-l~~~l~~P~~iavdp~~g~lywtd~~~ 366 (407)
+....+ + +-....++..+.+++.-|++..++.+.
T Consensus 303 dpeta~ftv~p~pr~n~gn~ql~gr~ge~W~~e~gv 338 (353)
T COG4257 303 DPETARFTVLPIPRPNSGNIQLDGRPGELWFTEAGV 338 (353)
T ss_pred CcccceEEEecCCCCCCCceeccCCCCceeecccCc
Confidence 765543 2 334667778999999999999998654
No 51
>KOG4499|consensus
Probab=96.39 E-value=0.047 Score=49.68 Aligned_cols=89 Identities=22% Similarity=0.323 Sum_probs=69.0
Q ss_pred EEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC--C---CeEEEEc-------cCCCCceEEEE
Q psy950 59 GKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN--G---GNRQIIR-------RNLPNPMGIAV 126 (407)
Q Consensus 59 ~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d--G---~~~~~~~-------~~~~~P~~lav 126 (407)
.+..+-|-..+.+. ..+.-|+||+-|...+..|++|+....|..-++| + ++++++. .+-..|-|+++
T Consensus 141 Ly~~~~~h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~I 219 (310)
T KOG4499|consen 141 LYSWLAGHQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTI 219 (310)
T ss_pred EEEeccCCCceeee-hhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceE
Confidence 44455554454444 3577899999999999999999999999888865 2 4555543 24557889999
Q ss_pred eC-CEEEEEeCCCCeEEEEecCC
Q psy950 127 HK-SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 127 ~~-~~lYwtd~~~~~I~~~~~~~ 148 (407)
+. +.||.+-|..++|++++..+
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~t 242 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTT 242 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCC
Confidence 87 89999999999999999887
No 52
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.08 E-value=1.9 Score=43.66 Aligned_cols=219 Identities=12% Similarity=0.129 Sum_probs=116.7
Q ss_pred CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeEEEEccCCCCceEEEE--eCCE
Q psy950 55 YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSD 130 (407)
Q Consensus 55 ~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~ 130 (407)
...|+.++.||.+.+.+.... ......+..+.+++|+++.. +...|...++++..++.+...-....+.++ ++.+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred ceEEEEECCCCCCcEEEecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence 358999999999988776532 24456778888888888753 346899999987766554321112223344 3456
Q ss_pred EEEEeCCC--CeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCc
Q psy950 131 VYWVDRNL--RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKL 208 (407)
Q Consensus 131 lYwtd~~~--~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~ 208 (407)
|+++-... ..|+..+..+ +. ...+... +.....|+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~-~~---~~~Lt~~---------------~~~~~~~~~----------------------- 297 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRS-GT---TTRLTDS---------------PAIDTSPSY----------------------- 297 (435)
T ss_pred EEEEEecCCCceEEEEECCC-Cc---eEEccCC---------------CCccCceeE-----------------------
Confidence 76654322 2566666554 21 1111100 000001111
Q ss_pred ceEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC
Q psy950 209 HYKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP 284 (407)
Q Consensus 209 ~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~ 284 (407)
.+|++ .++|+.. ..|..+.+..... ..+. ..........+.+.+++|+++....
T Consensus 298 ------------spDG~-------~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt--~~~~~~~~~~~SpdG~~ia~~~~~~ 355 (435)
T PRK05137 298 ------------SPDGS-------QIVFESDRSGSPQLYVMNADGSNP-RRIS--FGGGRYSTPVWSPRGDLIAFTKQGG 355 (435)
T ss_pred ------------cCCCC-------EEEEEECCCCCCeEEEEECCCCCe-EEee--cCCCcccCeEECCCCCEEEEEEcCC
Confidence 11211 1222211 1233343332211 1110 0111223356778889988876433
Q ss_pred -CceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCCC----CeEEEEECCCCc
Q psy950 285 -WAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRPW----AKIAWIPTTNPS 338 (407)
Q Consensus 285 -~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~~----~~I~v~~~~~~~ 338 (407)
...|..+++++..... ..+...+.+++.+-++.||++-.... ..|.++++++..
T Consensus 356 ~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 356 GQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred CceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 1468888877654332 11225678888888999999754321 258888888764
No 53
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.08 E-value=0.093 Score=50.19 Aligned_cols=99 Identities=19% Similarity=0.271 Sum_probs=68.9
Q ss_pred cceEEEeC---CCCEEEEEEcCCCCeEEEEeCC----CCC---------eEEEEeCCCCCceeEEEeCCCCeEEEEeCCC
Q psy950 35 NTTSPFSP---LPRLLYWIDYGQYPRIGKSYLD----GSK---------WTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98 (407)
Q Consensus 35 P~~iavdp---~~g~lywtd~~~~~~I~r~~~d----G~~---------~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~ 98 (407)
..|||+.| ..++|||.-.... +++++... .+. .+.+-..+ ....|+++|. ++.||+++...
T Consensus 130 ~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~-~~s~g~~~D~-~G~ly~~~~~~ 206 (287)
T PF03022_consen 130 IFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDKG-SQSDGMAIDP-NGNLYFTDVEQ 206 (287)
T ss_dssp EEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEEEET-TTEEEEEECCC
T ss_pred ccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccccC-CCCceEEECC-CCcEEEecCCC
Confidence 57888877 4469999987654 78888752 221 23333322 3567999999 89999999999
Q ss_pred CeEEEEecCC----CeEEEEc--c-CCCCceEEEEeC---CEEEEEeC
Q psy950 99 DLIQKISYNG----GNRQIIR--R-NLPNPMGIAVHK---SDVYWVDR 136 (407)
Q Consensus 99 ~~I~~~~~dG----~~~~~~~--~-~~~~P~~lav~~---~~lYwtd~ 136 (407)
+.|.+.+.++ .+.+++. . .+..|-++++.+ +.||+..-
T Consensus 207 ~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 207 NAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 9999999998 4555555 3 488999999988 89998853
No 54
>KOG4499|consensus
Probab=96.02 E-value=0.21 Score=45.61 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=80.0
Q ss_pred CcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-----CCCeEEEEeC------CCCCceeEEEeCCCCe
Q psy950 22 KKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-----GSKWTSIVSN------GISMPRDLTIDMQTHD 90 (407)
Q Consensus 22 ~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-----G~~~~~l~~~------~~~~P~glaiD~~~~~ 90 (407)
+++-.++...+.-|-||+-|....++|++|.-+. .|...+.| -++|.+|+.. +--.|.|++||- .+.
T Consensus 147 ~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~-~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~ 224 (310)
T KOG4499|consen 147 GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNY-EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGN 224 (310)
T ss_pred CCCceeeehhccCCccccccccCcEEEEEccCce-EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCc
Confidence 4566677888888999999999999999998765 77555533 3567877742 223699999998 799
Q ss_pred EEEEeCCCCeEEEEecCCCeE-EEEccCCCCceEEEEeC---CEEEEE
Q psy950 91 VYWVDAKLDLIQKISYNGGNR-QIIRRNLPNPMGIAVHK---SDVYWV 134 (407)
Q Consensus 91 lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~P~~lav~~---~~lYwt 134 (407)
||++-...++|..++..-..+ ..+.-...+....++-+ +.+|.|
T Consensus 225 L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 225 LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 999999999999999865444 44332233334444443 567776
No 55
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=95.98 E-value=0.018 Score=34.36 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=22.3
Q ss_pred CCCcceEEEeCCCCEEEEEEcCCCCeEEE
Q psy950 32 RSANTTSPFSPLPRLLYWIDYGQYPRIGK 60 (407)
Q Consensus 32 ~~~P~~iavdp~~g~lywtd~~~~~~I~r 60 (407)
+..|.|||+| ..|.||.+|.+.+ +|.+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~-rV~v 27 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNH-RVQV 27 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCT-EEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCC-EEEE
Confidence 3579999999 6699999998865 7754
No 56
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.95 E-value=2.3 Score=43.40 Aligned_cols=104 Identities=9% Similarity=-0.045 Sum_probs=64.0
Q ss_pred CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCC
Q psy950 44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNL 118 (407)
Q Consensus 44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~ 118 (407)
.+..|.+.... ..+|+.++.||.+.+.+.... ......+..+.+++|+|+... ...|...++++...+.+...-
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~ 261 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSP-EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP 261 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCC-CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC
Confidence 44556655432 247888999999988776532 233467888889999887543 457999999877665543211
Q ss_pred CCceEEEE--eCCEEEEEeCCCC--eEEEEecCC
Q psy950 119 PNPMGIAV--HKSDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 119 ~~P~~lav--~~~~lYwtd~~~~--~I~~~~~~~ 148 (407)
......++ ++.+|+++....+ .|+..+..+
T Consensus 262 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~t 295 (448)
T PRK04792 262 GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIAT 295 (448)
T ss_pred CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCC
Confidence 12223444 3467877643333 466666554
No 57
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=95.93 E-value=0.97 Score=45.93 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=52.9
Q ss_pred EEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc--------cCCCCceEEEEeCC--------EEEEE
Q psy950 71 IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR--------RNLPNPMGIAVHKS--------DVYWV 134 (407)
Q Consensus 71 l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~--------~~~~~P~~lav~~~--------~lYwt 134 (407)
++.+++..|.+|++.+. ++||+++...++|.+++.++...+.+. ....-+.||+++.+ +||++
T Consensus 24 ~va~GL~~Pw~maflPD-G~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPWALLWGPD-NQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCceEEEEcCC-CeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34558999999999984 699999988899999986654432221 13466799999755 48877
Q ss_pred eCC---------CCeEEEEecC
Q psy950 135 DRN---------LRTVYKASKL 147 (407)
Q Consensus 135 d~~---------~~~I~~~~~~ 147 (407)
-.. ..+|.|....
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred EeccCCCCCccCCcEEEEEEec
Confidence 421 3356666554
No 58
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.83 E-value=0.12 Score=48.62 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=74.7
Q ss_pred cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe----C----CCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950 35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS----N----GISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~----~----~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 106 (407)
-.|+|.||..+.+|++--..--.|+...++-+.-..-+. . -+....|+..|..++.|++.......+..++.
T Consensus 183 fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 183 FEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred ceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 379999999999988865543377777754432221111 0 13357899999999999999999999999999
Q ss_pred CCCeEEEEc---------cCCCCceEEEEeC-CEEEEE
Q psy950 107 NGGNRQIIR---------RNLPNPMGIAVHK-SDVYWV 134 (407)
Q Consensus 107 dG~~~~~~~---------~~~~~P~~lav~~-~~lYwt 134 (407)
+|..+..+. ..+++|-|||.+. +.||.+
T Consensus 263 ~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 263 SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 998765442 4688999999987 788876
No 59
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=95.69 E-value=0.008 Score=38.23 Aligned_cols=34 Identities=35% Similarity=0.863 Sum_probs=23.5
Q ss_pred ccCCCcccccc--cceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950 184 CFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227 (407)
Q Consensus 184 C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C 227 (407)
|.. ++++|.. .|.++++ +|+|.|..||. .||..|
T Consensus 1 C~~-~~~~C~~nA~C~~~~~-------~~~C~C~~Gy~--GdG~~C 36 (36)
T PF12947_consen 1 CLE-NNGGCHPNATCTNTGG-------SYTCTCKPGYE--GDGFFC 36 (36)
T ss_dssp TTT-GGGGS-TTCEEEE-TT-------SEEEEE-CEEE--CCSTCE
T ss_pred CCC-CCCCCCCCcEeecCCC-------CEEeECCCCCc--cCCcCC
Confidence 344 6778853 8888876 59999999996 677766
No 60
>PRK04043 tolB translocation protein TolB; Provisional
Probab=95.60 E-value=3 Score=42.18 Aligned_cols=226 Identities=14% Similarity=0.088 Sum_probs=122.9
Q ss_pred CCEEEEEEc-CC-CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe-EEEEeCC--CCeEEEEecCCCeEEEEccCC
Q psy950 44 PRLLYWIDY-GQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD-VYWVDAK--LDLIQKISYNGGNRQIIRRNL 118 (407)
Q Consensus 44 ~g~lywtd~-~~-~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~-lYw~d~~--~~~I~~~~~dG~~~~~~~~~~ 118 (407)
++.+|++.. +. ..+|+.++.||.+.+++...+ .-..-...+.+++ +|++... ...|...++.+..++.+...-
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence 578888873 32 459999999999988877643 2234566676775 7765443 567999999877766554211
Q ss_pred CC--ceEEEEeCCEEEEEeCCC--CeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccc
Q psy950 119 PN--PMGIAVHKSDVYWVDRNL--RTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQ 194 (407)
Q Consensus 119 ~~--P~~lav~~~~lYwtd~~~--~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~ 194 (407)
.. ....+-++.+|.++.... ..|+.++..+ +. .+.+... +.....|.
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~-g~---~~~LT~~---------------~~~d~~p~---------- 283 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT-KT---LTQITNY---------------PGIDVNGN---------- 283 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC-Cc---EEEcccC---------------CCccCccE----------
Confidence 11 122223445777665432 2455555443 11 1111100 00000111
Q ss_pred cceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEE
Q psy950 195 LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEF 270 (407)
Q Consensus 195 lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~ 270 (407)
..+||+ .|+|++. ..|..+.++........ ..+..+ .++
T Consensus 284 -------------------------~SPDG~-------~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~---~~~ 326 (419)
T PRK04043 284 -------------------------FVEDDK-------RIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNN---SSV 326 (419)
T ss_pred -------------------------ECCCCC-------EEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcC---ceE
Confidence 123332 1223222 25555665543321111 111111 267
Q ss_pred EcCCCEEEEEEecC-------CceEEEEeCCCCcccc--cCCCCccEEEEeccCCeEEEEeCCC-CCeEEEEECCCCc
Q psy950 271 DYADDKILFTQIRP-------WAKIAWIPTTNPSSAS--SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS 338 (407)
Q Consensus 271 d~~~~~lywsd~~~-------~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi~~~LYwtd~~~-~~~I~v~~~~~~~ 338 (407)
++.+++|.++.... ...|+.+++++..... .-+ .-+..++.+-++.|||+.... +..|..++++|..
T Consensus 327 SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 327 STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 88888888775432 1368888887765432 212 344577888899999986543 1358899999874
No 61
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.2 Score=49.72 Aligned_cols=123 Identities=11% Similarity=0.105 Sum_probs=84.3
Q ss_pred eEEEcCCCCCcceEEEeCCCCEEEEEEcCC---C----------------CeEE-------EEeCCCCCeEEEEeCC---
Q psy950 25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQ---Y----------------PRIG-------KSYLDGSKWTSIVSNG--- 75 (407)
Q Consensus 25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~---~----------------~~I~-------r~~~dG~~~~~l~~~~--- 75 (407)
..+...++.+|.|++.||.+|.||.+|.+. . |-++ +...++.-...+....
T Consensus 231 ~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~ 310 (399)
T COG2133 231 SEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTW 310 (399)
T ss_pred cceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceee
Confidence 567788899999999999999999999876 1 1111 2222222222222211
Q ss_pred --CCCceeEEEeCCC------CeEEEEeCCCCeEEEEecCCCeEEEE---cc--CCCCceEEEEeC-CEEEEEeCC-CCe
Q psy950 76 --ISMPRDLTIDMQT------HDVYWVDAKLDLIQKISYNGGNRQII---RR--NLPNPMGIAVHK-SDVYWVDRN-LRT 140 (407)
Q Consensus 76 --~~~P~glaiD~~~------~~lYw~d~~~~~I~~~~~dG~~~~~~---~~--~~~~P~~lav~~-~~lYwtd~~-~~~ 140 (407)
...|.||++=.-+ +.||+.....-.+.+.+.+|....++ +. ....|.+|++.. +.||.++-. ++.
T Consensus 311 ~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~ 390 (399)
T COG2133 311 APHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGR 390 (399)
T ss_pred ccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCe
Confidence 1246788886432 68999888888888888999844222 22 336999999987 889988876 669
Q ss_pred EEEEecC
Q psy950 141 VYKASKL 147 (407)
Q Consensus 141 I~~~~~~ 147 (407)
|.|+...
T Consensus 391 i~Rv~~~ 397 (399)
T COG2133 391 ILRVSYA 397 (399)
T ss_pred EEEecCC
Confidence 9998765
No 62
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.30 E-value=0.76 Score=48.13 Aligned_cols=62 Identities=11% Similarity=0.013 Sum_probs=48.5
Q ss_pred cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc-----------cc-c-C-CCceeEEEEcCCCCeEEEEeC
Q psy950 301 SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS-----------AS-S-N-LTNVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 301 ~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r-----------l~-~-~-l~~P~~iavdp~~g~lywtd~ 364 (407)
.++.+|.||++.+.++.+|.++..+ +++.|+++..... +. + . -..|...+.|+. |+.|-|=.
T Consensus 318 PVGKsPHGV~vSPDGkylyVanklS-~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~-G~aytslf 393 (635)
T PRK02888 318 PVPKNPHGVNTSPDGKYFIANGKLS-PTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGR-GNAYTTLF 393 (635)
T ss_pred ECCCCccceEECCCCCEEEEeCCCC-CcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCC-CCEEEeEe
Confidence 5667999999999999999999999 8999999876431 22 1 2 368889999886 67776643
No 63
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.19 E-value=3.3 Score=40.24 Aligned_cols=264 Identities=10% Similarity=0.084 Sum_probs=140.3
Q ss_pred CEEEEEEcC---CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC---------CCeEEEEecCCCeE-
Q psy950 45 RLLYWIDYG---QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK---------LDLIQKISYNGGNR- 111 (407)
Q Consensus 45 g~lywtd~~---~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~---------~~~I~~~~~dG~~~- 111 (407)
.++|..|.. ...+++..+-|-....-.+..++ .| .+++.+.++.+|.++.. ++.|+..+......
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~-~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~ 80 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGF-LG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT 80 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEES-SE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeeccc-CC-ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence 577888763 12366666655444333444333 33 48899999999998853 23466666555443
Q ss_pred -EEEc-c-----CCCCc--eEEEEeCCEEEEEeCCCC-eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCC
Q psy950 112 -QIIR-R-----NLPNP--MGIAVHKSDVYWVDRNLR-TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN 181 (407)
Q Consensus 112 -~~~~-~-----~~~~P--~~lav~~~~lYwtd~~~~-~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~ 181 (407)
++.. . .+.++ ++++.++.++|..+-.-- +|..++... ..++.
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~------~kvv~---------------------- 132 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAA------KKVVG---------------------- 132 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTT------TEEEE----------------------
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCC------Cceee----------------------
Confidence 2222 1 12333 344445678887664432 566666554 11111
Q ss_pred CCccCCCcccccccceecCCCCCCCCcceEEecCCCcc----ccCCCCcccccceeeeeecccceEEeecCCCCCeeeeE
Q psy950 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP----SASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFK 257 (407)
Q Consensus 182 n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~----l~~d~~~C~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~ 257 (407)
+- ..-||.++- |... .++.-.|..|-. |+.+|+.-. .+ ..+.....+ |+
T Consensus 133 -ei---~~PGC~~iy-P~~~------~~F~~lC~DGsl~~v~Ld~~Gk~~~---------~~---t~~F~~~~d---p~- 185 (342)
T PF06433_consen 133 -EI---DTPGCWLIY-PSGN------RGFSMLCGDGSLLTVTLDADGKEAQ---------KS---TKVFDPDDD---PL- 185 (342)
T ss_dssp -EE---EGTSEEEEE-EEET------TEEEEEETTSCEEEEEETSTSSEEE---------EE---EEESSTTTS----B-
T ss_pred -ee---cCCCEEEEE-ecCC------CceEEEecCCceEEEEECCCCCEeE---------ee---ccccCCCCc---cc-
Confidence 00 235777764 3332 268889998843 445554110 00 112111111 11
Q ss_pred eecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----------------cCCCCccEEEEeccCCeEEEE
Q psy950 258 TVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----------------SNLTNVVGVEFDYADDKILFT 321 (407)
Q Consensus 258 ~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----------------~~~~~~~glAvDwi~~~LYwt 321 (407)
+.++ .|...++++||.... +.|+.+++.+..... .-+ .-.-+|++.-++.||..
T Consensus 186 ----f~~~---~~~~~~~~~~F~Sy~--G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG-G~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 186 ----FEHP---AYSRDGGRLYFVSYE--GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG-GWQLIAYHAASGRLYVL 255 (342)
T ss_dssp -----S-----EEETTTTEEEEEBTT--SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE--SSS-EEEETTTTEEEEE
T ss_pred ----cccc---ceECCCCeEEEEecC--CEEEEEeccCCcccccCcccccCccccccCcCCc-ceeeeeeccccCeEEEE
Confidence 0111 345566788886554 468888887764321 122 44569999999999987
Q ss_pred eCCC-C-------CeEEEEECCCCccc-------------ccCCCceeEEEEcCCCCeEEEEeCCCCCcccccCC
Q psy950 322 QIRP-W-------AKIAWIPTTNPSSA-------------SSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPT 375 (407)
Q Consensus 322 d~~~-~-------~~I~v~~~~~~~rl-------------~~~l~~P~~iavdp~~g~lywtd~~~~~~ia~~dg 375 (407)
.... + ..|.++++...+|+ ++.-.+|.=++++...+.||.-|......+..|++
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 4321 0 35899999888752 23456888888888888888888755443344443
No 64
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=95.10 E-value=1.3 Score=42.49 Aligned_cols=102 Identities=15% Similarity=0.125 Sum_probs=68.0
Q ss_pred CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCC--------------
Q psy950 74 NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLR-------------- 139 (407)
Q Consensus 74 ~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~-------------- 139 (407)
+++..|++--.- +++||++|++.+.+..++.+....+.+...-..|.||++.++.+|..-....
T Consensus 200 ~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l 277 (335)
T TIGR03032 200 SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERL 277 (335)
T ss_pred cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCcccceeCCEEEEEeccccCCCCcCCCchhhhh
Confidence 477788776665 6999999999999999999844444555555699999999988887644211
Q ss_pred -----eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCC
Q psy950 140 -----TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPP 178 (407)
Q Consensus 140 -----~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~ 178 (407)
.|..++..+ |..-..-.+...+...+++.|....++|.
T Consensus 278 ~~~~CGv~vidl~t-G~vv~~l~feg~v~EifdV~vLPg~r~P~ 320 (335)
T TIGR03032 278 DALGCGVAVIDLNS-GDVVHWLRFEGVIEEIYDVAVLPGVRRPE 320 (335)
T ss_pred hhhcccEEEEECCC-CCEEEEEEeCCceeEEEEEEEecCCCCcc
Confidence 345566555 32111222234456677777776555554
No 65
>PRK02889 tolB translocation protein TolB; Provisional
Probab=94.89 E-value=4.9 Score=40.62 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=63.4
Q ss_pred CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCCCc
Q psy950 44 PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLPNP 121 (407)
Q Consensus 44 ~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P 121 (407)
....|.++.+....|+.++.||.+.+.+.... ..-...+..+.+++|+++... ...|...++++..++.+...-...
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~ 242 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN 242 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc
Confidence 44556554433458999999999977766432 233467888888898887643 356999999877665443211223
Q ss_pred eEEEEeC--CEEEEEeCCC--CeEEEEecCC
Q psy950 122 MGIAVHK--SDVYWVDRNL--RTVYKASKLA 148 (407)
Q Consensus 122 ~~lav~~--~~lYwtd~~~--~~I~~~~~~~ 148 (407)
...++.+ .+|+++-... ..|+.++..+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~ 273 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADG 273 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 3455543 5677653322 2566666543
No 66
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=94.77 E-value=0.1 Score=40.24 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=34.3
Q ss_pred CCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEec
Q psy950 63 LDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106 (407)
Q Consensus 63 ~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 106 (407)
.||+..+++. .++..|+||++|+.++.||+++...+.|.....
T Consensus 41 yd~~~~~~va-~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 41 YDGKEVKVVA-SGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred EeCCEeEEee-ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 3455554444 478899999999999999999999998887654
No 67
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=94.73 E-value=0.039 Score=35.17 Aligned_cols=34 Identities=29% Similarity=0.916 Sum_probs=24.0
Q ss_pred CCccCCCcccccc--cceecCCCCCCCCcceEEecCCCccccCCCCcc
Q psy950 182 NPCFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227 (407)
Q Consensus 182 n~C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C 227 (407)
++|.. . ..|.+ .|++.++ +|.|.|+.||. +++.|
T Consensus 3 ~~C~~-~-~~C~~~~~C~~~~g-------~~~C~C~~g~~---~g~~C 38 (39)
T smart00179 3 DECAS-G-NPCQNGGTCVNTVG-------SYRCECPPGYT---DGRNC 38 (39)
T ss_pred ccCcC-C-CCcCCCCEeECCCC-------CeEeECCCCCc---cCCcC
Confidence 45543 1 45655 7888766 59999999986 56666
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.67 E-value=5.6 Score=40.26 Aligned_cols=104 Identities=10% Similarity=0.006 Sum_probs=67.1
Q ss_pred CCEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeEEEEccCC
Q psy950 44 PRLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNRQIIRRNL 118 (407)
Q Consensus 44 ~g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~ 118 (407)
++..|...... ...|+.++.||.+++.+... -......+..+.+++|.++.. +...|...++++...+.+...-
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~-~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecC-CCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence 45566655322 35899999999998887653 234567899999988887643 3457898999877665544222
Q ss_pred CCceEEEEe--CCEEEEEeCCCC--eEEEEecCC
Q psy950 119 PNPMGIAVH--KSDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 119 ~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~~ 148 (407)
.+...+++. +.+|+++....+ .|+..+..+
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~t 276 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS 276 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 223344554 468888754333 466666554
No 69
>PRK04043 tolB translocation protein TolB; Provisional
Probab=94.66 E-value=2.6 Score=42.56 Aligned_cols=133 Identities=17% Similarity=0.105 Sum_probs=84.3
Q ss_pred EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCE-EEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCC
Q psy950 12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRL-LYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTH 89 (407)
Q Consensus 12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~-lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~ 89 (407)
+.+.+...||...+++..++ .-..-...|..++ +|.+... ..+.|++.++++..++.|.... .....-+..+.++
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCC
Confidence 34555667777766666553 2345667777664 7777665 4689999999887777766421 2223345777788
Q ss_pred eEEEEeCC--CCeEEEEecCCCeEEEEc-cC--CCCceEEEEeCCEEEEEeCCCC--eEEEEecCC
Q psy950 90 DVYWVDAK--LDLIQKISYNGGNRQIIR-RN--LPNPMGIAVHKSDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 90 ~lYw~d~~--~~~I~~~~~dG~~~~~~~-~~--~~~P~~lav~~~~lYwtd~~~~--~I~~~~~~~ 148 (407)
+|.++... ...|..++++|...+.+- .. ...| ..+-++.+||++....+ .|++.+..+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p-~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNG-NFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCcc-EECCCCCEEEEEECCCCCceEEEEECCC
Confidence 88877543 357999999887654443 11 1122 22234578888864433 688888775
No 70
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=94.53 E-value=5.9 Score=39.89 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=59.2
Q ss_pred CEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc-cccc--CCCcee
Q psy950 275 DKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS-SASS--NLTNVV 348 (407)
Q Consensus 275 ~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~-rl~~--~l~~P~ 348 (407)
+.+...+... ..+-..+.+|..... +++ .++.|+++..++.+-..+... .|.++++++.. ++.+ .-....
T Consensus 372 e~~vigt~dg-D~l~iyd~~~~e~kr~e~~lg-~I~av~vs~dGK~~vvaNdr~--el~vididngnv~~idkS~~~lIt 447 (668)
T COG4946 372 EGDVIGTNDG-DKLGIYDKDGGEVKRIEKDLG-NIEAVKVSPDGKKVVVANDRF--ELWVIDIDNGNVRLIDKSEYGLIT 447 (668)
T ss_pred cceEEeccCC-ceEEEEecCCceEEEeeCCcc-ceEEEEEcCCCcEEEEEcCce--EEEEEEecCCCeeEecccccceeE
Confidence 3433444444 456666776665332 788 999999999999999998887 69999998765 3432 345677
Q ss_pred EEEEcCCCCeEEEE
Q psy950 349 GVEFDYADDKILFT 362 (407)
Q Consensus 349 ~iavdp~~g~lywt 362 (407)
+++++|..+++=++
T Consensus 448 df~~~~nsr~iAYa 461 (668)
T COG4946 448 DFDWHPNSRWIAYA 461 (668)
T ss_pred EEEEcCCceeEEEe
Confidence 88888887776444
No 71
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.22 E-value=4.3 Score=40.89 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=83.0
Q ss_pred EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950 12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD 90 (407)
Q Consensus 12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~ 90 (407)
|.+.+...+|...+.+... -......+..|...+|+|+... ..+.|++.++++...+.+.... ......+..+.+++
T Consensus 179 ~~l~~~d~~g~~~~~l~~~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~ 256 (430)
T PRK00178 179 YTLQRSDYDGARAVTLLQS-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSK 256 (430)
T ss_pred eEEEEECCCCCCceEEecC-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCE
Confidence 3444555666655555433 2334777899999999887654 3468999999987776655322 22335778888889
Q ss_pred EEEEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCCC--CeEEEEecCC
Q psy950 91 VYWVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRNL--RTVYKASKLA 148 (407)
Q Consensus 91 lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~ 148 (407)
|+++-.. ...|..+++++...+.+..........++ ++.+||++.... ..|+..+..+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 9876543 34799999988766544322222233344 346777764332 2566666554
No 72
>PRK03629 tolB translocation protein TolB; Provisional
Probab=94.17 E-value=4.5 Score=40.96 Aligned_cols=135 Identities=9% Similarity=0.042 Sum_probs=85.9
Q ss_pred EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950 12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD 90 (407)
Q Consensus 12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~ 90 (407)
+.+.+...+|...+.+.. +-..-.+.+..|...+|.|+... ..+.|+..++++...+.+.... ......+..+.+++
T Consensus 179 ~~l~~~d~dg~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~ 256 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSK 256 (429)
T ss_pred eeEEEEcCCCCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCE
Confidence 456666777777666644 33345788999998888887543 3468999999987766665421 12345789999999
Q ss_pred EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCC--CeEEEEecCC
Q psy950 91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNL--RTVYKASKLA 148 (407)
Q Consensus 91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~--~~I~~~~~~~ 148 (407)
|+++.... ..|..+++++...+.+..........++.+ .+|+++.... ..|+.++..+
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~ 320 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING 320 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC
Confidence 99985433 469999998776654443222334455543 5565553322 2566666554
No 73
>PRK04922 tolB translocation protein TolB; Provisional
Probab=94.06 E-value=7.6 Score=39.29 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=115.5
Q ss_pred CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEEe--CCEE
Q psy950 56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAVH--KSDV 131 (407)
Q Consensus 56 ~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav~--~~~l 131 (407)
..|..++.+|.+.+.|...+ ......+..+.+++|+++... ...|...++++..++.+...-.....+++. +.+|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEE
Confidence 36888999999888776532 234567788888899988643 356999999877765544211122344453 4677
Q ss_pred EEEeCCCC--eEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcccccccceecCCCCCCCCcc
Q psy950 132 YWVDRNLR--TVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLH 209 (407)
Q Consensus 132 Ywtd~~~~--~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~ 209 (407)
+++-...+ .|+..+..+ +. .+.+... +.....++.
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~-g~---~~~lt~~---------------~~~~~~~~~------------------------ 299 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGS-RQ---LTRLTNH---------------FGIDTEPTW------------------------ 299 (433)
T ss_pred EEEEeCCCCceEEEEECCC-CC---eEECccC---------------CCCccceEE------------------------
Confidence 76643322 466666554 21 1111100 000001111
Q ss_pred eEEecCCCccccCCCCcccccceeeeeecc----cceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecC-
Q psy950 210 YKCDCATGTPSASDPKKCTTMDEYLVFSTR----TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP- 284 (407)
Q Consensus 210 ~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~- 284 (407)
.+|++ +|+|+.. ..|..+.+..... ..+ .... ......++.+.++.|+++....
T Consensus 300 -----------spDG~-------~l~f~sd~~g~~~iy~~dl~~g~~-~~l-t~~g-~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 300 -----------APDGK-------SIYFTSDRGGRPQIYRVAASGGSA-ERL-TFQG-NYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred -----------CCCCC-------EEEEEECCCCCceEEEEECCCCCe-EEe-ecCC-CCccCEEECCCCCEEEEEECCCC
Confidence 11221 1222211 1233333332211 111 1111 1122467888899999876533
Q ss_pred CceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCC-CCeEEEEECCCCc
Q psy950 285 WAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRP-WAKIAWIPTTNPS 338 (407)
Q Consensus 285 ~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~-~~~I~v~~~~~~~ 338 (407)
...|+.+++++..... .-+...+..++.+.++.||++.... ...|..++++|..
T Consensus 359 ~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 359 QYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred ceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 1368888887654332 1111345667888899999876532 1468888887753
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=94.00 E-value=4.3 Score=41.38 Aligned_cols=135 Identities=10% Similarity=0.026 Sum_probs=83.9
Q ss_pred EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950 12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD 90 (407)
Q Consensus 12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~ 90 (407)
+.+.+...+|...+.+.. .-..-...+..|...+|+|+... ..+.|+..++++...+.+.... ......+..+.+++
T Consensus 198 ~~l~i~d~dG~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~ 275 (448)
T PRK04792 198 YQLMIADYDGYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKK 275 (448)
T ss_pred eEEEEEeCCCCCceEeec-CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCE
Confidence 344445566765555433 22334578889999999998653 3468999999987766655322 12346788898999
Q ss_pred EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCCC--CeEEEEecCC
Q psy950 91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRNL--RTVYKASKLA 148 (407)
Q Consensus 91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~~--~~I~~~~~~~ 148 (407)
|+++.... ..|..+++++...+.+..........++ ++.+|+++.... ..|+.++..+
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 98874433 3699999987766544322222333444 346777765432 2566666654
No 75
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.00 E-value=7.8 Score=39.21 Aligned_cols=117 Identities=13% Similarity=0.100 Sum_probs=71.7
Q ss_pred EEEEEcCCCEEEEEEecC-CceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCC-CeEEEEECCCCc-cc
Q psy950 267 GVEFDYADDKILFTQIRP-WAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPW-AKIAWIPTTNPS-SA 340 (407)
Q Consensus 267 ald~d~~~~~lywsd~~~-~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~-~~I~v~~~~~~~-rl 340 (407)
...+.+.+++|+++.... ...|+.+++++..... .-+ .....++.+.++.|+++..... ..|.++++++.. ++
T Consensus 294 ~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~-~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 294 SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG-RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC-cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 356778888887764332 2468888888764332 222 4556777788999998865431 368889987654 33
Q ss_pred ccCCCceeEEEEcCCCCeEEEEeCCC-C---CcccccCCCCCCCcceeEEE
Q psy950 341 SSNLTNVVGVEFDYADDKILFTQIRP-W---AKIAWIPTTNPSSASVNTIL 387 (407)
Q Consensus 341 ~~~l~~P~~iavdp~~g~lywtd~~~-~---~~ia~~dg~~~~~~~~~~l~ 387 (407)
.+.-.....++..|-...|+|+--.. . .++ ...+++|.+.+.|.
T Consensus 373 lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L---~~~dl~g~~~~~l~ 420 (435)
T PRK05137 373 LTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKL---YTVDLTGRNEREVP 420 (435)
T ss_pred ccCCCCCCCCeECCCCCEEEEEEccCCCCCcceE---EEEECCCCceEEcc
Confidence 33223456778888888888874321 1 233 23355666665444
No 76
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=93.86 E-value=2.2 Score=42.30 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=72.7
Q ss_pred cCCCCCcceEEE--eCCCCEEEEEEcCCCCeEEEEeC--CCCC--eEEEEeC-C-CCCceeEEEeCCCCeEEEEeCCCCe
Q psy950 29 TSFRSANTTSPF--SPLPRLLYWIDYGQYPRIGKSYL--DGSK--WTSIVSN-G-ISMPRDLTIDMQTHDVYWVDAKLDL 100 (407)
Q Consensus 29 ~~~~~~P~~iav--dp~~g~lywtd~~~~~~I~r~~~--dG~~--~~~l~~~-~-~~~P~glaiD~~~~~lYw~d~~~~~ 100 (407)
...+..|.|+++ ++..|.+|..-.+..+.++...| +|.. ...++.+ . -..|+|+++|...++||..+.. .-
T Consensus 152 ~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvgEE~-~G 230 (381)
T PF02333_consen 152 ATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVGEED-VG 230 (381)
T ss_dssp E-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEEETT-TE
T ss_pred ccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEecCc-cE
Confidence 345677999998 56777777654443345655555 3433 3344432 2 2479999999999999999976 47
Q ss_pred EEEEecC---CCeEEEEc----c-CCCCceEEEEeC-----CEEEEEeCCCCeEEEEecCC
Q psy950 101 IQKISYN---GGNRQIIR----R-NLPNPMGIAVHK-----SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 101 I~~~~~d---G~~~~~~~----~-~~~~P~~lav~~-----~~lYwtd~~~~~I~~~~~~~ 148 (407)
|++.+.+ +..++.+. . -....-||+++. ++|..++...++....+..+
T Consensus 231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 8998886 33444442 1 124667999862 57888888777665555553
No 77
>smart00181 EGF Epidermal growth factor-like domain.
Probab=93.71 E-value=0.074 Score=33.10 Aligned_cols=24 Identities=33% Similarity=0.953 Sum_probs=19.1
Q ss_pred ccccc-cceecCCCCCCCCcceEEecCCCccc
Q psy950 190 GGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPS 220 (407)
Q Consensus 190 g~Cs~-lC~~~~~~~~~~~~~~~C~C~~G~~l 220 (407)
..|.+ .|++..+ +|.|.|+.||.+
T Consensus 6 ~~C~~~~C~~~~~-------~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPG-------SYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCC-------CeEeECCCCCcc
Confidence 56666 8998755 699999999974
No 78
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.68 E-value=8.3 Score=38.42 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCEEEEEEcC--CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC--CeEEEEecCCCeEEEEccCCC
Q psy950 44 PRLLYWIDYG--QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL--DLIQKISYNGGNRQIIRRNLP 119 (407)
Q Consensus 44 ~g~lywtd~~--~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~ 119 (407)
.+..|....+ ....|..++.||.+.+.+...+ ......+..+.+++|+|+.... ..|...++.+...+.+.....
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~ 234 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADYDGANPQTITRSR-EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG 234 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCC-CceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC
Confidence 3455555543 2457999999999888877533 1234566888889999987543 578888887665544332222
Q ss_pred CceEEEEeC--CEEEEEeCCCC--eEEEEecCC
Q psy950 120 NPMGIAVHK--SDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 120 ~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~ 148 (407)
...++++.. ..||++....+ .|+..+..+
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~ 267 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDG 267 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCC
Confidence 334455543 56777643322 466666543
No 79
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.32 E-value=2.8 Score=44.09 Aligned_cols=70 Identities=10% Similarity=-0.046 Sum_probs=54.3
Q ss_pred CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe---------EEEEc---cCCCCceEEEEeC-CEEEEEeCCCCeEEEE
Q psy950 78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN---------RQIIR---RNLPNPMGIAVHK-SDVYWVDRNLRTVYKA 144 (407)
Q Consensus 78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~---------~~~~~---~~~~~P~~lav~~-~~lYwtd~~~~~I~~~ 144 (407)
.|+|+++.+.++.+|.+....+.+.++++.-.. +.++. +....|...++++ +..|-|=--...|.+.
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kw 401 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKW 401 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEE
Confidence 799999999999999999999999999986532 12222 4577999999988 5888776555566666
Q ss_pred ecC
Q psy950 145 SKL 147 (407)
Q Consensus 145 ~~~ 147 (407)
+..
T Consensus 402 n~~ 404 (635)
T PRK02888 402 NIE 404 (635)
T ss_pred ehH
Confidence 654
No 80
>PRK04922 tolB translocation protein TolB; Provisional
Probab=93.21 E-value=5.8 Score=40.13 Aligned_cols=133 Identities=8% Similarity=0.053 Sum_probs=81.3
Q ss_pred EeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEE
Q psy950 14 IRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY 92 (407)
Q Consensus 14 ~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lY 92 (407)
+.+...+|...+.+... -..-.+.+..|...+|+++... ..+.|++.++++..++.+.... ......++.+.+++|+
T Consensus 186 l~i~D~~g~~~~~lt~~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 186 LQVADSDGYNPQTILRS-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEECCCCCCceEeecC-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEEE
Confidence 44444455544444432 2234567888998899998754 3468999999887776655322 2234678889889998
Q ss_pred EEeCC--CCeEEEEecCCCeEEEEccCCCCceEEEEe--CCEEEEEeCCC--CeEEEEecCC
Q psy950 93 WVDAK--LDLIQKISYNGGNRQIIRRNLPNPMGIAVH--KSDVYWVDRNL--RTVYKASKLA 148 (407)
Q Consensus 93 w~d~~--~~~I~~~~~dG~~~~~~~~~~~~P~~lav~--~~~lYwtd~~~--~~I~~~~~~~ 148 (407)
++-.. ...|..+++++...+.+..........++. +.+|+++.-.. ..|+.++..+
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~ 325 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASG 325 (433)
T ss_pred EEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 76433 347999999877665443222222344554 45677664332 2577776554
No 81
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=92.87 E-value=0.074 Score=32.85 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=20.7
Q ss_pred cccccccceecCCCCCCCCcceEEecCCCccccCC
Q psy950 189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASD 223 (407)
Q Consensus 189 ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d 223 (407)
...|...|-+... ..|.||.||.|+.+
T Consensus 5 ~t~CpA~CDpn~~--------~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 5 QTECPADCDPNSP--------GQCFCPEGYILDEG 31 (34)
T ss_pred cccCCCccCCCCC--------CceeCCCceEecCC
Confidence 3678888877543 58999999998654
No 82
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.75 E-value=0.58 Score=30.11 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=30.2
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEE
Q psy950 87 QTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAV 126 (407)
Q Consensus 87 ~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav 126 (407)
.+++||.++...+.|..++........-.....+|.+|++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4789999999999999999854443222344688999886
No 83
>PRK01742 tolB translocation protein TolB; Provisional
Probab=92.73 E-value=10 Score=38.35 Aligned_cols=134 Identities=12% Similarity=0.085 Sum_probs=81.4
Q ss_pred EEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCe
Q psy950 12 WAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHD 90 (407)
Q Consensus 12 ~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~ 90 (407)
+.+.+...+|.....+ +..-..-.+.+..|...+|.|+..+ ..+.|+..++++..++.+.... ..-..++..+.+++
T Consensus 184 ~~i~i~d~dg~~~~~l-t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~ 261 (429)
T PRK01742 184 YEVRVADYDGFNQFIV-NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSR 261 (429)
T ss_pred EEEEEECCCCCCceEe-ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCE
Confidence 4555666677765544 3333345788999999999988654 3468999999877666554321 12335788888889
Q ss_pred EEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEEEeC--CEEEEEeCCCC--eEEEEecC
Q psy950 91 VYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDRNLR--TVYKASKL 147 (407)
Q Consensus 91 lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~~~~--~I~~~~~~ 147 (407)
|+++-... -.|+.+++++...+.+..........++.. .+|+++....+ .|+..+..
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 98875333 357888888776654432222233444433 45666543222 45554443
No 84
>PRK01029 tolB translocation protein TolB; Provisional
Probab=91.36 E-value=18 Score=36.65 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=73.2
Q ss_pred cceEEEeCCCCEEEEEEc-CCCCeEEEEeCCCCC--eEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCC
Q psy950 35 NTTSPFSPLPRLLYWIDY-GQYPRIGKSYLDGSK--WTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGG 109 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~-~~~~~I~r~~~dG~~--~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~ 109 (407)
....++.|...+|+++.. +..+.|++.++++.. .+.+.. ........+..+.+++|+++... ...|...++++.
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 356689999888888753 344689999987533 333332 22344567788889999887643 357999999888
Q ss_pred eEEEEccCCCCceEEEEe--CCEEEEEeCC--CCeEEEEecCC
Q psy950 110 NRQIIRRNLPNPMGIAVH--KSDVYWVDRN--LRTVYKASKLA 148 (407)
Q Consensus 110 ~~~~~~~~~~~P~~lav~--~~~lYwtd~~--~~~I~~~~~~~ 148 (407)
..+.+..........++. +..||++... ...|+.++..+
T Consensus 362 ~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 362 RDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred CeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 776654332233455554 4677776443 23677888775
No 85
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.33 E-value=6.6 Score=37.57 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=73.2
Q ss_pred ceEEEeCC--CCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCC--------CCceeEEEeCCCCeEEEEeC---------
Q psy950 36 TTSPFSPL--PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGI--------SMPRDLTIDMQTHDVYWVDA--------- 96 (407)
Q Consensus 36 ~~iavdp~--~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~--------~~P~glaiD~~~~~lYw~d~--------- 96 (407)
+|+|+-.. ..+||-+|..+ .+|..-+ ++-+.+-+.... ..|-+| --.+++||++-+
T Consensus 141 kGLAi~~~~~~~~LYaadF~~-g~IDVFd--~~f~~~~~~g~F~DP~iPagyAPFnI--qnig~~lyVtYA~qd~~~~d~ 215 (336)
T TIGR03118 141 KGLAVGPTGGGDYLYAANFRQ-GRIDVFK--GSFRPPPLPGSFIDPALPAGYAPFNV--QNLGGTLYVTYAQQDADRNDE 215 (336)
T ss_pred eeeEEeecCCCceEEEeccCC-CceEEec--CccccccCCCCccCCCCCCCCCCcce--EEECCeEEEEEEecCCccccc
Confidence 56666544 68999999975 4888763 333322221111 134444 445799999854
Q ss_pred ----CCCeEEEEecCCCeEEEEc--cCCCCceEEEEe-------CCEEEEEeCCCCeEEEEecCC
Q psy950 97 ----KLDLIQKISYNGGNRQIIR--RNLPNPMGIAVH-------KSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 97 ----~~~~I~~~~~dG~~~~~~~--~~~~~P~~lav~-------~~~lYwtd~~~~~I~~~~~~~ 148 (407)
+.+.|.+.+++|.-.+.+. ..+..|.||++. .+.|..-.-..++|-..+...
T Consensus 216 v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~s 280 (336)
T TIGR03118 216 VAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQS 280 (336)
T ss_pred ccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCC
Confidence 3357999999999887765 679999999983 377888888888887766553
No 86
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.18 E-value=16 Score=36.83 Aligned_cols=130 Identities=8% Similarity=0.059 Sum_probs=77.8
Q ss_pred eeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEE
Q psy950 16 LALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWV 94 (407)
Q Consensus 16 ~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~ 94 (407)
....+|...+.+... -..-.+.+..|...+|+++... ..+.|+..++++..++.+.... ......+..+.+++|+++
T Consensus 180 ~~D~dG~~~~~l~~~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~la~~ 257 (427)
T PRK02889 180 ISDADGQNAQSALSS-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTLAVA 257 (427)
T ss_pred EECCCCCCceEeccC-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEE
Confidence 344455554554432 2223577889998899887653 3468999999977766654322 234567888888899876
Q ss_pred eC--CCCeEEEEecCCCeEEEEccCCCCceEEEE--eCCEEEEEeCC--CCeEEEEecC
Q psy950 95 DA--KLDLIQKISYNGGNRQIIRRNLPNPMGIAV--HKSDVYWVDRN--LRTVYKASKL 147 (407)
Q Consensus 95 d~--~~~~I~~~~~dG~~~~~~~~~~~~P~~lav--~~~~lYwtd~~--~~~I~~~~~~ 147 (407)
-. +...|..++++|...+.+..........++ ++.+|+++... ...|+..+..
T Consensus 258 ~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 258 LSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECC
Confidence 33 345688999887765544322122223344 34567665322 2245555544
No 87
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.54 E-value=0.8 Score=29.40 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEe
Q psy950 273 ADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFD 312 (407)
Q Consensus 273 ~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvD 312 (407)
.+++||.++... +.|..++..+..... .++..|.+|+++
T Consensus 2 d~~~lyv~~~~~-~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGS-NTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCC-CEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 468899999888 889988886654443 556689999875
No 88
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=90.01 E-value=22 Score=35.38 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCEEEEEEc-CCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCe
Q psy950 34 ANTTSPFSPLPRLLYWIDY-GQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGN 110 (407)
Q Consensus 34 ~P~~iavdp~~g~lywtd~-~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~ 110 (407)
...++++.|....||++.. .....|+..++++...+.+.... ......+..+.+++|+++... ...|..+++++..
T Consensus 235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 3567889998888887643 33458999999877665554321 222345667778888887543 3479999998876
Q ss_pred EEEEccCCCCceEEEEe--CCEEEEEeCCCC--eEEEEecC
Q psy950 111 RQIIRRNLPNPMGIAVH--KSDVYWVDRNLR--TVYKASKL 147 (407)
Q Consensus 111 ~~~~~~~~~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~ 147 (407)
.+.+.........+++. +..++++....+ .|..++..
T Consensus 314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~ 354 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLD 354 (417)
T ss_pred EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCC
Confidence 65444333344445554 467888765432 45555544
No 89
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.83 E-value=8.1 Score=37.57 Aligned_cols=62 Identities=16% Similarity=0.162 Sum_probs=47.4
Q ss_pred CcceEEEeCCCCEEEEEEcCC-----CCeEEEEeCCCCCeEEE-EeCCC-------------CCceeEEEeCCCCeEEEE
Q psy950 34 ANTTSPFSPLPRLLYWIDYGQ-----YPRIGKSYLDGSKWTSI-VSNGI-------------SMPRDLTIDMQTHDVYWV 94 (407)
Q Consensus 34 ~P~~iavdp~~g~lywtd~~~-----~~~I~r~~~dG~~~~~l-~~~~~-------------~~P~glaiD~~~~~lYw~ 94 (407)
.+.||++ +..|.+||++-+. .|+|.+.+++|.....+ +...+ .-.+|||+.+.++.||.+
T Consensus 86 D~Egi~~-~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAV-PPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEE-ecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 5679999 7779999998775 26999999999986655 22211 136799999998888887
Q ss_pred eC
Q psy950 95 DA 96 (407)
Q Consensus 95 d~ 96 (407)
-.
T Consensus 165 ~E 166 (326)
T PF13449_consen 165 ME 166 (326)
T ss_pred EC
Confidence 54
No 90
>PRK00178 tolB translocation protein TolB; Provisional
Probab=88.58 E-value=29 Score=34.88 Aligned_cols=104 Identities=14% Similarity=0.068 Sum_probs=63.1
Q ss_pred CCEEEEEEcCC----CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccC
Q psy950 44 PRLLYWIDYGQ----YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRN 117 (407)
Q Consensus 44 ~g~lywtd~~~----~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~ 117 (407)
++..|.+.... .-+|..++.||.+.+.+...+ ......+..+.+++|+++... ...|...++++...+.+...
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~ 241 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF 241 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence 44556554321 126889999999887776532 234667888889999776533 35799999987766554421
Q ss_pred CCCceEEEEe--CCEEEEEeCCCC--eEEEEecCC
Q psy950 118 LPNPMGIAVH--KSDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 118 ~~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~~ 148 (407)
-......++. +++|+++-...+ .|+..+..+
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~ 276 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLAS 276 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCC
Confidence 1222234443 357776643332 566666554
No 91
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=88.56 E-value=0.58 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=15.7
Q ss_pred cccceecCCCCCCCCcceEEecCCCcc
Q psy950 193 EQLCFSYPVEFPQNKLHYKCDCATGTP 219 (407)
Q Consensus 193 s~lC~~~~~~~~~~~~~~~C~C~~G~~ 219 (407)
.+.|.+.++ .|.|.|+.||.
T Consensus 14 ~~~C~~~~~-------~~~C~C~~g~~ 33 (38)
T cd00054 14 GGTCVNTVG-------SYRCSCPPGYT 33 (38)
T ss_pred CCEeECCCC-------CeEeECCCCCc
Confidence 357887665 59999999986
No 92
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=88.32 E-value=18 Score=34.74 Aligned_cols=118 Identities=8% Similarity=-0.045 Sum_probs=70.2
Q ss_pred ceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-----CCCeEEEEeC-------CCCCceeEEEeCCCCe-
Q psy950 24 KKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-----GSKWTSIVSN-------GISMPRDLTIDMQTHD- 90 (407)
Q Consensus 24 ~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-----G~~~~~l~~~-------~~~~P~glaiD~~~~~- 90 (407)
....+...|.+|+||++.|. +.++.+|.+.. .....+.+ |.....++.. .-..|+|+++......
T Consensus 14 ~A~~tDp~L~N~WGia~~p~-~~~WVadngT~-~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~ 91 (336)
T TIGR03118 14 AAQIVDPGLRNAWGLSYRPG-GPFWVANTGTG-TATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFV 91 (336)
T ss_pred cccccCccccccceeEecCC-CCEEEecCCcc-eEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceE
Confidence 34566678999999999996 45555555543 66666666 5554444431 1347999999864432
Q ss_pred ------------EEEEeCCCCeEEEEec--CCC---eEEEEc---cCCCCceEEEEe----CCEEEEEeCCCCeEEEEe
Q psy950 91 ------------VYWVDAKLDLIQKISY--NGG---NRQIIR---RNLPNPMGIAVH----KSDVYWVDRNLRTVYKAS 145 (407)
Q Consensus 91 ------------lYw~d~~~~~I~~~~~--dG~---~~~~~~---~~~~~P~~lav~----~~~lYwtd~~~~~I~~~~ 145 (407)
||.++ .++|..-.. +-. .-.++. .....-+|||+. +++||-+|-.+++|...+
T Consensus 92 vt~~g~~~~a~Fif~tE--dGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 92 VSGEGITGPSRFLFVTE--DGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred EcCCCcccceeEEEEeC--CceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 33333 345544432 112 111222 123445788887 589999998888876654
No 93
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.18 E-value=8.1 Score=38.33 Aligned_cols=76 Identities=14% Similarity=0.051 Sum_probs=48.2
Q ss_pred CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC---CCCeEEEEeC---CC-CCceeEEEeCC---CCeEEEEeCCCCeEE
Q psy950 33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD---GSKWTSIVSN---GI-SMPRDLTIDMQ---THDVYWVDAKLDLIQ 102 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d---G~~~~~l~~~---~~-~~P~glaiD~~---~~~lYw~d~~~~~I~ 102 (407)
.+|.|+++|.+.|+||..+.+. -|++...+ +..++.+... .+ ...+||+|=+. .+.|..++-+.++..
T Consensus 208 sQ~EGCVVDDe~g~LYvgEE~~--GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 208 SQPEGCVVDDETGRLYVGEEDV--GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp S-EEEEEEETTTTEEEEEETTT--EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CcceEEEEecccCCEEEecCcc--EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 4799999999999999999863 89999997 3444444331 12 36788888432 235666666666666
Q ss_pred EEecCCCe
Q psy950 103 KISYNGGN 110 (407)
Q Consensus 103 ~~~~dG~~ 110 (407)
+.+..|.+
T Consensus 286 Vy~r~~~~ 293 (381)
T PF02333_consen 286 VYDREGPN 293 (381)
T ss_dssp EEESSTT-
T ss_pred EEecCCCC
Confidence 66655544
No 94
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=86.70 E-value=0.77 Score=27.98 Aligned_cols=19 Identities=32% Similarity=0.845 Sum_probs=15.4
Q ss_pred ccceecCCCCCCCCcceEEecCCCcc
Q psy950 194 QLCFSYPVEFPQNKLHYKCDCATGTP 219 (407)
Q Consensus 194 ~lC~~~~~~~~~~~~~~~C~C~~G~~ 219 (407)
..|.+.++ .|.|.|+.||.
T Consensus 12 ~~C~~~~~-------~~~C~C~~g~~ 30 (36)
T cd00053 12 GTCVNTPG-------SYRCVCPPGYT 30 (36)
T ss_pred CEEecCCC-------CeEeECCCCCc
Confidence 57777665 59999999997
No 95
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=86.62 E-value=23 Score=31.59 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=131.8
Q ss_pred CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCe-E
Q psy950 33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-R 111 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~-~ 111 (407)
....+++++|...+|+..... ..|...+++.................+...+.++.|+.+. ..+.|...+++... .
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~--g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~ 86 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGD--GTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECV 86 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecC--cEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccce
Confidence 345789999987777766543 3677777765443333322222334777777665555554 46788888877532 2
Q ss_pred EEEccCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCCCCCCcccEEcccCCCCceeeEEeeecCCCCCCCCCccCCCcc
Q psy950 112 QIIRRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNPCFRTGNG 190 (407)
Q Consensus 112 ~~~~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~~~~~~p~~i~i~~~~~qp~~~~n~C~~~~ng 190 (407)
..+......+..+.+.+ +.++.+....+.|...+... + .....+ . . ..+
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~--~~~~~~-------------~--~------------~~~ 136 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-G--KCLTTL-------------R--G------------HTD 136 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-c--EEEEEe-------------c--c------------CCC
Confidence 33333333556666665 34555544444554444332 0 000000 0 0 000
Q ss_pred cccccceecCCCCCCCCcceEEecCCCccccCCCCcccccceeeeeec-ccceEEeecCCCCCeeeeEeecCCcceEEEE
Q psy950 191 GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFST-RTEIRALHLDPTLTAVPFKTVSNLTNVVGVE 269 (407)
Q Consensus 191 ~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~l~~d~~~C~~~~~~Ll~s~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald 269 (407)
....+++. |.+ .+++.+. ...+.-..+........+ . .....+.++.
T Consensus 137 ~i~~~~~~----------------~~~--------------~~l~~~~~~~~i~i~d~~~~~~~~~~-~-~~~~~i~~~~ 184 (289)
T cd00200 137 WVNSVAFS----------------PDG--------------TFVASSSQDGTIKLWDLRTGKCVATL-T-GHTGEVNSVA 184 (289)
T ss_pred cEEEEEEc----------------CcC--------------CEEEEEcCCCcEEEEEccccccceeE-e-cCccccceEE
Confidence 11111111 000 1111111 223333333221111111 0 1122466788
Q ss_pred EEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCcc---cccC
Q psy950 270 FDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSN 343 (407)
Q Consensus 270 ~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~r---l~~~ 343 (407)
+++.++.++.+.. . +.|...++....... .....+..++++.. +.++.+.... ++|.+.++..... +...
T Consensus 185 ~~~~~~~l~~~~~-~-~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~ 260 (289)
T cd00200 185 FSPDGEKLLSSSS-D-GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGSED-GTIRVWDLRTGECVQTLSGH 260 (289)
T ss_pred ECCCcCEEEEecC-C-CcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEcCC-CcEEEEEcCCceeEEEcccc
Confidence 8888778777765 4 567777776543332 22226778888876 5555555545 6899988875432 2223
Q ss_pred CCceeEEEEcCCCCeEEEE
Q psy950 344 LTNVVGVEFDYADDKILFT 362 (407)
Q Consensus 344 l~~P~~iavdp~~g~lywt 362 (407)
-..+..++++|...+|+-.
T Consensus 261 ~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 261 TNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred CCcEEEEEECCCCCEEEEe
Confidence 3467788888875555433
No 96
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=86.33 E-value=2.3 Score=32.80 Aligned_cols=42 Identities=21% Similarity=-0.052 Sum_probs=31.9
Q ss_pred cCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeC
Q psy950 20 LLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYL 63 (407)
Q Consensus 20 ~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~ 63 (407)
+++. ...+..++..|-||+++|.+++||.++...+ .|.....
T Consensus 42 d~~~-~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~-~I~vy~~ 83 (86)
T PF01731_consen 42 DGKE-VKVVASGFSFANGIAISPDKKYLYVASSLAH-SIHVYKR 83 (86)
T ss_pred eCCE-eEEeeccCCCCceEEEcCCCCEEEEEeccCC-eEEEEEe
Confidence 3443 3456678999999999999999999998764 6665543
No 97
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=85.77 E-value=1.8 Score=43.11 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=49.2
Q ss_pred CcceEEEeCCCCEEEEEEcCC------------CCeEEEEe--------CCCCCeEEEEeCCCCCceeEEEeCCCCeEEE
Q psy950 34 ANTTSPFSPLPRLLYWIDYGQ------------YPRIGKSY--------LDGSKWTSIVSNGISMPRDLTIDMQTHDVYW 93 (407)
Q Consensus 34 ~P~~iavdp~~g~lywtd~~~------------~~~I~r~~--------~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw 93 (407)
.-+.|+++|.. +||.+--.. .++|.|.+ .++.+ ..+.+.++..|.||+.++.++.||.
T Consensus 178 ~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~-~~i~s~G~RN~qGl~w~P~tg~Lw~ 255 (399)
T COG2133 178 FGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPN-SEIWSYGHRNPQGLAWHPVTGALWT 255 (399)
T ss_pred CcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCC-cceEEeccCCccceeecCCCCcEEE
Confidence 35889999995 999984322 13444444 44555 3456678999999999999999999
Q ss_pred EeCCCCeE
Q psy950 94 VDAKLDLI 101 (407)
Q Consensus 94 ~d~~~~~I 101 (407)
++.+.+.+
T Consensus 256 ~e~g~d~~ 263 (399)
T COG2133 256 TEHGPDAL 263 (399)
T ss_pred EecCCCcc
Confidence 99988776
No 98
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=85.32 E-value=0.54 Score=22.74 Aligned_cols=9 Identities=33% Similarity=1.021 Sum_probs=7.0
Q ss_pred EEecCCCcc
Q psy950 211 KCDCATGTP 219 (407)
Q Consensus 211 ~C~C~~G~~ 219 (407)
+|.|+.||.
T Consensus 1 ~C~C~~G~~ 9 (13)
T PF12661_consen 1 TCQCPPGWT 9 (13)
T ss_dssp EEEE-TTEE
T ss_pred CccCcCCCc
Confidence 599999997
No 99
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=85.21 E-value=29 Score=35.14 Aligned_cols=108 Identities=9% Similarity=0.004 Sum_probs=81.9
Q ss_pred EEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC---CCCeEEE
Q psy950 27 LKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA---KLDLIQK 103 (407)
Q Consensus 27 l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~ 103 (407)
.+..++.+-.+++++|...++-.++.. -.|+..++|-.+.+.+-++.-....++++.+..+.|-.+-. .+..|..
T Consensus 396 r~e~~lg~I~av~vs~dGK~~vvaNdr--~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl 473 (668)
T COG4946 396 RIEKDLGNIEAVKVSPDGKKVVVANDR--FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL 473 (668)
T ss_pred EeeCCccceEEEEEcCCCcEEEEEcCc--eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence 445678899999999998878877653 48999999988888887777777889999998777665543 3467889
Q ss_pred EecCCCeEEEEccCCCCceEEEEeC--CEEEEEeC
Q psy950 104 ISYNGGNRQIIRRNLPNPMGIAVHK--SDVYWVDR 136 (407)
Q Consensus 104 ~~~dG~~~~~~~~~~~~P~~lav~~--~~lYwtd~ 136 (407)
.+++|..+--+-..-.+-|+-|++. .+||+...
T Consensus 474 ydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 474 YDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred EecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 9999987755444455666667765 78998754
No 100
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=84.83 E-value=0.81 Score=28.07 Aligned_cols=27 Identities=37% Similarity=0.958 Sum_probs=18.2
Q ss_pred CCCccCCCcccccccceecCCCCCCCCcceEEecCCCcc
Q psy950 181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219 (407)
Q Consensus 181 ~n~C~~~~ng~Cs~lC~~~~~~~~~~~~~~~C~C~~G~~ 219 (407)
.+||.. +|. |+.... .+|.|.|+.||.
T Consensus 3 ~~~C~n--~g~----C~~~~~------~~y~C~C~~G~~ 29 (32)
T PF00008_consen 3 SNPCQN--GGT----CIDLPG------GGYTCECPPGYT 29 (32)
T ss_dssp TTSSTT--TEE----EEEEST------SEEEEEEBTTEE
T ss_pred CCcCCC--CeE----EEeCCC------CCEEeECCCCCc
Confidence 357753 444 555552 279999999986
No 101
>PRK01742 tolB translocation protein TolB; Provisional
Probab=84.38 E-value=49 Score=33.38 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=64.0
Q ss_pred CEEEEEEcCC---CCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCC--CCeEEEEecCCCeEEEEccCCC
Q psy950 45 RLLYWIDYGQ---YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK--LDLIQKISYNGGNRQIIRRNLP 119 (407)
Q Consensus 45 g~lywtd~~~---~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~--~~~I~~~~~dG~~~~~~~~~~~ 119 (407)
+..|.++... ...|+.++.||.++..+.... ......+..+.+++|+++... ...|...++.+..++.+...-.
T Consensus 170 ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g 248 (429)
T PRK01742 170 RIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG 248 (429)
T ss_pred EEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence 3446665432 248999999999987766532 245678889989999887543 3579999998766554432112
Q ss_pred CceEEEEeC--CEEEEEeCCCC--eEEEEecCC
Q psy950 120 NPMGIAVHK--SDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 120 ~P~~lav~~--~~lYwtd~~~~--~I~~~~~~~ 148 (407)
+-..+++.+ .+|+++....+ .|+.++..+
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence 223455543 57777643333 456666543
No 102
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=83.22 E-value=19 Score=37.55 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=45.6
Q ss_pred CCCCcceEEEeCCCCEEEEEEcCC------------------CCeEEEEeCCCC-------CeEEEEe------------
Q psy950 31 FRSANTTSPFSPLPRLLYWIDYGQ------------------YPRIGKSYLDGS-------KWTSIVS------------ 73 (407)
Q Consensus 31 ~~~~P~~iavdp~~g~lywtd~~~------------------~~~I~r~~~dG~-------~~~~l~~------------ 73 (407)
.+++|.+|+++|..|.+|++-... ..+|.|...++. .-+.++.
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 478999999999999999986432 248999888766 2222222
Q ss_pred -----CCCCCceeEEEeCCCCeEEEEe
Q psy950 74 -----NGISMPRDLTIDMQTHDVYWVD 95 (407)
Q Consensus 74 -----~~~~~P~glaiD~~~~~lYw~d 95 (407)
..+..|..|++|+. ++|+.+.
T Consensus 428 ~~~~~~~f~sPDNL~~d~~-G~LwI~e 453 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPD-GNLWIQE 453 (524)
T ss_pred CcccCCCcCCCCceEECCC-CCEEEEe
Confidence 12558999999995 5565554
No 103
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=78.26 E-value=68 Score=31.05 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=40.7
Q ss_pred cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC-CCcc-cccCCCceeEEEEcCCCCeEEEEe
Q psy950 301 SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT-NPSS-ASSNLTNVVGVEFDYADDKILFTQ 363 (407)
Q Consensus 301 ~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~-~~~r-l~~~l~~P~~iavdp~~g~lywtd 363 (407)
++. .|++- -|-.++||+.|++. ++|..++.+ |... +..--..|+||+.. |.+.++-
T Consensus 201 GLs-mPhSP--RWhdgrLwvldsgt-Gev~~vD~~~G~~e~Va~vpG~~rGL~f~---G~llvVg 258 (335)
T TIGR03032 201 GLS-MPHSP--RWYQGKLWLLNSGR-GELGYVDPQAGKFQPVAFLPGFTRGLAFA---GDFAFVG 258 (335)
T ss_pred Ccc-CCcCC--cEeCCeEEEEECCC-CEEEEEcCCCCcEEEEEECCCCCccccee---CCEEEEE
Confidence 555 55553 48899999999999 899999987 5544 44444799999998 4444443
No 104
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=77.81 E-value=63 Score=30.42 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=50.4
Q ss_pred CceeEEEeCCCCeEEEEeCCCC--eEEEEecCCCeE-EEE-ccCCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950 78 MPRDLTIDMQTHDVYWVDAKLD--LIQKISYNGGNR-QII-RRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 78 ~P~glaiD~~~~~lYw~d~~~~--~I~~~~~dG~~~-~~~-~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~ 148 (407)
.-.||.++. .+.||-+....+ .|.+.+++.... +.. ...-.=--||++.+++||--.|.++..+..++.+
T Consensus 46 FTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 46 FTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTT
T ss_pred cCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEcccc
Confidence 345888853 578999987665 688888886543 221 2222233599999999999999999999888775
No 105
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=77.56 E-value=23 Score=34.73 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=63.5
Q ss_pred CCCcceEEEe-CCC-CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCc-eeEEEeCCCCeEEEEeCC----CCeEEEE
Q psy950 32 RSANTTSPFS-PLP-RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMP-RDLTIDMQTHDVYWVDAK----LDLIQKI 104 (407)
Q Consensus 32 ~~~P~~iavd-p~~-g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P-~glaiD~~~~~lYw~d~~----~~~I~~~ 104 (407)
++....+.+- +.. +++++++.....+|+..+.+|...+.|.. +-... .-+.+|..++.||++-.. ...+.++
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~-G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTS-GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecccc-CceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 4445566653 444 55555554445699999999998664443 33334 358999999999999875 4589999
Q ss_pred ecC-CCeEEEEc-cCCCCceEEEEeCC
Q psy950 105 SYN-GGNRQIIR-RNLPNPMGIAVHKS 129 (407)
Q Consensus 105 ~~d-G~~~~~~~-~~~~~P~~lav~~~ 129 (407)
+++ |...+.|- ....+ +.+++..+
T Consensus 313 ~~~~~~~~~~LT~~~~~~-~~~~~Spd 338 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDH-YSASFSPD 338 (353)
T ss_dssp ETTETTEEEESSTTSSTT-EEEEE-TT
T ss_pred EeCCCCCeEeccCCCCCc-eEEEECCC
Confidence 999 88877665 33334 67777664
No 106
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=75.45 E-value=73 Score=29.99 Aligned_cols=109 Identities=14% Similarity=-0.029 Sum_probs=72.3
Q ss_pred cceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEE
Q psy950 35 NTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ 112 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 112 (407)
-.|+.++. .|.||=+... .+++|.+.+++......-.. ..-..-+||++- +++||-.-++.+.....+.+.-...
T Consensus 47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence 37888853 4888877642 34699999998654332222 223357899998 6899999999999999998755442
Q ss_pred EEccCCCCceEEEEeCCEEEEEeCCCCeEEEEecC
Q psy950 113 IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKL 147 (407)
Q Consensus 113 ~~~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~ 147 (407)
--..-...-.||+.+++.||-+|.+ ..|+..+..
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS-~~L~~~dP~ 157 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGS-SRLYFLDPE 157 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SS-SEEEEE-TT
T ss_pred EEEecCCcceEEEcCCCEEEEECCc-cceEEECCc
Confidence 2112235789999999999999985 467766644
No 107
>KOG0273|consensus
Probab=72.10 E-value=48 Score=33.53 Aligned_cols=93 Identities=10% Similarity=0.140 Sum_probs=60.0
Q ss_pred ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc-cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc--
Q psy950 264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-- 340 (407)
Q Consensus 264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~-~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl-- 340 (407)
.+.+|-..-.+.+|.=..... ..|..-...|...+. .+. +..++.|||++..=|-+.+.. +.|.|+.++....+
T Consensus 278 PI~slKWnk~G~yilS~~vD~-ttilwd~~~g~~~q~f~~~-s~~~lDVdW~~~~~F~ts~td-~~i~V~kv~~~~P~~t 354 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDG-TTILWDAHTGTVKQQFEFH-SAPALDVDWQSNDEFATSSTD-GCIHVCKVGEDRPVKT 354 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCc-cEEEEeccCceEEEeeeec-cCCccceEEecCceEeecCCC-ceEEEEEecCCCccee
Confidence 355676666666665444444 333332233322222 455 666899999999999999998 89999998876542
Q ss_pred -ccCCCceeEEEEcCCCCeE
Q psy950 341 -SSNLTNVVGVEFDYADDKI 359 (407)
Q Consensus 341 -~~~l~~P~~iavdp~~g~l 359 (407)
.-.-....+|.-+|..-+|
T Consensus 355 ~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 355 FIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred eecccCceEEEEECCCCceE
Confidence 2244677788888865444
No 108
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=70.90 E-value=21 Score=34.60 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=53.5
Q ss_pred CCcceEEEeCCCCEEEEE--EcCC---CCeEEEEeCCCCC----eEE------EEeCC---C----CCceeEEEeCCCCe
Q psy950 33 SANTTSPFSPLPRLLYWI--DYGQ---YPRIGKSYLDGSK----WTS------IVSNG---I----SMPRDLTIDMQTHD 90 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywt--d~~~---~~~I~r~~~dG~~----~~~------l~~~~---~----~~P~glaiD~~~~~ 90 (407)
..-.||++|+..+. ||+ |.+. .+++++..++... ... |...+ + ..++||++ ..++.
T Consensus 20 GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~g~ 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPDGS 97 (326)
T ss_pred CcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecCCC
Confidence 33489999986554 454 4333 3568888877521 111 11111 1 16789999 67899
Q ss_pred EEEEeCCC------CeEEEEecCCCeEEEE
Q psy950 91 VYWVDAKL------DLIQKISYNGGNRQII 114 (407)
Q Consensus 91 lYw~d~~~------~~I~~~~~dG~~~~~~ 114 (407)
+||++.+. ..|...+.+|...+.+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~ 127 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRF 127 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCCCcccceE
Confidence 99999999 9999999998876443
No 109
>KOG0315|consensus
Probab=66.88 E-value=1.1e+02 Score=28.57 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=83.4
Q ss_pred eeeeecccceEEeecCCCCCeeeeEeecCC-cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEE
Q psy950 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNL-TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGV 309 (407)
Q Consensus 233 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~-~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~gl 309 (407)
+|..+....||-..++..+. .|+..+.+. +++.++.|...+..+|=. .+. +.+...++....... .....+..+
T Consensus 54 ~LAaa~~qhvRlyD~~S~np-~Pv~t~e~h~kNVtaVgF~~dgrWMyTg-seD-gt~kIWdlR~~~~qR~~~~~spVn~v 130 (311)
T KOG0315|consen 54 DLAAAGNQHVRLYDLNSNNP-NPVATFEGHTKNVTAVGFQCDGRWMYTG-SED-GTVKIWDLRSLSCQRNYQHNSPVNTV 130 (311)
T ss_pred hhhhccCCeeEEEEccCCCC-CceeEEeccCCceEEEEEeecCeEEEec-CCC-ceEEEEeccCcccchhccCCCCcceE
Confidence 55556677888888877543 366666554 889999999888877654 334 566666666544332 222266778
Q ss_pred EEeccCCeEEEEeCCCCCeEEEEECCCCc--c-cc-cCCCceeEEEEcCCCCeE
Q psy950 310 EFDYADDKILFTQIRPWAKIAWIPTTNPS--S-AS-SNLTNVVGVEFDYADDKI 359 (407)
Q Consensus 310 AvDwi~~~LYwtd~~~~~~I~v~~~~~~~--r-l~-~~l~~P~~iavdp~~g~l 359 (407)
-+.+--..|+..|+.- .|.+-++.... + +. +.....+.++|+|...+|
T Consensus 131 vlhpnQteLis~dqsg--~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml 182 (311)
T KOG0315|consen 131 VLHPNQTELISGDQSG--NIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSML 182 (311)
T ss_pred EecCCcceEEeecCCC--cEEEEEccCCccccccCCCCCcceeeEEEcCCCcEE
Confidence 8888888888888775 69888887653 3 33 566788899999975444
No 110
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=66.06 E-value=50 Score=34.46 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=38.1
Q ss_pred CCEEEEEEcCCCCeEEEEeCCCC-----------C-eEEEE----------eCCCCCceeEEEeCCCCeEEEEeCCCC
Q psy950 44 PRLLYWIDYGQYPRIGKSYLDGS-----------K-WTSIV----------SNGISMPRDLTIDMQTHDVYWVDAKLD 99 (407)
Q Consensus 44 ~g~lywtd~~~~~~I~r~~~dG~-----------~-~~~l~----------~~~~~~P~glaiD~~~~~lYw~d~~~~ 99 (407)
.|.||.+-+.....+++..|.-. . ..+++ -+.+.+|+++++++.++.||++-....
T Consensus 295 ~GtLyaak~~~~g~~~Wv~L~~~~~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~ 372 (524)
T PF05787_consen 295 EGTLYAAKFNQDGTGEWVPLGHGQGGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNS 372 (524)
T ss_pred CCEeceEEECCCCcEEEEECCCcccccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCC
Confidence 68888887765567777777422 1 11111 124668999999999999999975443
No 111
>KOG1219|consensus
Probab=62.10 E-value=4.9 Score=47.90 Aligned_cols=29 Identities=34% Similarity=0.922 Sum_probs=17.5
Q ss_pred CCccCCCcccccc--cceecCCCCCCCCcceEEecCCCcc
Q psy950 182 NPCFRTGNGGCEQ--LCFSYPVEFPQNKLHYKCDCATGTP 219 (407)
Q Consensus 182 n~C~~~~ng~Cs~--lC~~~~~~~~~~~~~~~C~C~~G~~ 219 (407)
.+|.. -.|+| .|...|.+ +|+|.||.-|.
T Consensus 3865 d~C~~---npCqhgG~C~~~~~g------gy~CkCpsqys 3895 (4289)
T KOG1219|consen 3865 DPCND---NPCQHGGTCISQPKG------GYKCKCPSQYS 3895 (4289)
T ss_pred ccccc---CcccCCCEecCCCCC------ceEEeCccccc
Confidence 55543 45554 56666664 67777776554
No 112
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=61.94 E-value=1.6e+02 Score=28.77 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=64.5
Q ss_pred EEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCC--------C-Cce---eEEEeCCCCeEEEEeCC---------
Q psy950 39 PFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGI--------S-MPR---DLTIDMQTHDVYWVDAK--------- 97 (407)
Q Consensus 39 avdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~--------~-~P~---glaiD~~~~~lYw~d~~--------- 97 (407)
+++...+.+||.... +.|+-+++.|...+..-.-.+ . .|- -+|++...++||+.=..
T Consensus 190 ~~~~~~~~~~F~Sy~--G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdp 267 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYE--GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDP 267 (342)
T ss_dssp EEETTTTEEEEEBTT--SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-
T ss_pred ceECCCCeEEEEecC--CEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCC
Confidence 344566789998775 589999999998665443222 1 243 49999999999996421
Q ss_pred CCeEEEEecCCCeEEEEccCCCCce-EEEEeC---CEEEEEeCCCCeEEEEecCC
Q psy950 98 LDLIQKISYNGGNRQIIRRNLPNPM-GIAVHK---SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 98 ~~~I~~~~~dG~~~~~~~~~~~~P~-~lav~~---~~lYwtd~~~~~I~~~~~~~ 148 (407)
...|+..|+.-..|..-. .+.+|. +|+|.. -.||-++...+.|...+..+
T Consensus 268 gteVWv~D~~t~krv~Ri-~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARI-PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEEETTTTEEEEEE-EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred ceEEEEEECCCCeEEEEE-eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 125888877766552111 122333 566644 25665555555566555554
No 113
>PRK01029 tolB translocation protein TolB; Provisional
Probab=60.14 E-value=2e+02 Score=29.09 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=70.4
Q ss_pred EEeeeeecCCcceEEEcCCCCCcceEEEeCCCC---EEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCC
Q psy950 13 AIRLALRLLKKKKKLKTSFRSANTTSPFSPLPR---LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTH 89 (407)
Q Consensus 13 s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g---~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~ 89 (407)
.+.+...+|...+.+.... ..-..=+..|... ++|.+.....+.|+..+++|..++.|.... ......+..+.++
T Consensus 166 ~l~~~d~dG~~~~~lt~~~-~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEH-SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCC-CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCC
Confidence 3444455666555543321 1112225556654 345665555689999999988877776522 2334567888888
Q ss_pred eEEEEeCC--CCeEEEE--ecCC----CeEEEEccCCCCceEEEEe--CCEEEEEeCCCC--eEEEEecC
Q psy950 90 DVYWVDAK--LDLIQKI--SYNG----GNRQIIRRNLPNPMGIAVH--KSDVYWVDRNLR--TVYKASKL 147 (407)
Q Consensus 90 ~lYw~d~~--~~~I~~~--~~dG----~~~~~~~~~~~~P~~lav~--~~~lYwtd~~~~--~I~~~~~~ 147 (407)
+|.|+-.. ...|... ++++ ..+++...........++. +.+|+++....+ .|+.++..
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 98887643 2345554 3332 2223332221222233443 456777654333 45555543
No 114
>KOG0310|consensus
Probab=59.71 E-value=1.8e+02 Score=29.60 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=88.0
Q ss_pred EEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC-ccccc
Q psy950 267 GVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP-SSASS 342 (407)
Q Consensus 267 ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~-~rl~~ 342 (407)
-+-|.+.++.++.+-... ..+....+++..++. +-.+.+...++-+.+++|..|-+-. ++|..-++.-. .++.+
T Consensus 115 ~~~f~~~d~t~l~s~sDd-~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-g~vrl~DtR~~~~~v~e 192 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDD-KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD-GKVRLWDTRSLTSRVVE 192 (487)
T ss_pred EEEecccCCeEEEecCCC-ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC-ceEEEEEeccCCceeEE
Confidence 456778888888876666 666667777666542 3334899999999999999999998 89988776654 34443
Q ss_pred -CCCceeEEEEcCCCCeEEEEeCCCCCcccccC-CC---------CCC------CcceeEEEeCCCccceeecc
Q psy950 343 -NLTNVVGVEFDYADDKILFTQIRPWAKIAWIP-TT---------NPS------SASVNTILSRGKDEKAKIEN 399 (407)
Q Consensus 343 -~l~~P~~iavdp~~g~lywtd~~~~~~ia~~d-g~---------~~~------~~~~~~l~~~~~~~~~~~~~ 399 (407)
+-..|-.-++--..|-++-+--|+..|+..+- |. +.. +++-+.|.+.++|+.||+-+
T Consensus 193 lnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 193 LNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred ecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEE
Confidence 55555554444445667777777766662222 11 111 12337799999999999876
No 115
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=59.37 E-value=2e+02 Score=29.21 Aligned_cols=88 Identities=17% Similarity=0.148 Sum_probs=57.7
Q ss_pred CeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCC--CeEEEEecCCCeEEEEccCCCCceEEE------Ee
Q psy950 56 PRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL--DLIQKISYNGGNRQIIRRNLPNPMGIA------VH 127 (407)
Q Consensus 56 ~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~--~~I~~~~~dG~~~~~~~~~~~~P~~la------v~ 127 (407)
++|.+.+++...+..+++.. +.-..-+.-+.+++|-++-... -.|..++++|++..- +.+.+|+. -+
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPD 292 (425)
T ss_pred ceEEEEeccCCccceeeccC-CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCC
Confidence 68999999988888887632 1223345556667777776544 469999999988543 23333333 34
Q ss_pred CCEEEEEeCCCC--eEEEEecCC
Q psy950 128 KSDVYWVDRNLR--TVYKASKLA 148 (407)
Q Consensus 128 ~~~lYwtd~~~~--~I~~~~~~~ 148 (407)
+.+||++.-+.+ .|++.+.++
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCC
Confidence 567777754444 688888776
No 116
>KOG4649|consensus
Probab=53.97 E-value=1.8e+02 Score=27.51 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=36.0
Q ss_pred EEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCC
Q psy950 26 KLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99 (407)
Q Consensus 26 ~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~ 99 (407)
+++.-+-..-+-+||||..|.|||-..-. .+||-..|-=.+. +.|-=.++.||+.+..++
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~vvgdf-------------VV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIVVGDF-------------VVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEEECCE-------------EEEEEccCcEEEEEecch
Confidence 33334455667899999999999964432 3676555431111 333334566777776655
No 117
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=53.14 E-value=1.7e+02 Score=30.60 Aligned_cols=24 Identities=8% Similarity=-0.032 Sum_probs=20.8
Q ss_pred CCCCCcceEEEeCCCCEEEEEEcC
Q psy950 30 SFRSANTTSPFSPLPRLLYWIDYG 53 (407)
Q Consensus 30 ~~~~~P~~iavdp~~g~lywtd~~ 53 (407)
..+++|..|++.|..|.+|.+-.+
T Consensus 414 T~mdRpE~i~~~p~~g~Vy~~lTN 437 (616)
T COG3211 414 TPMDRPEWIAVNPGTGEVYFTLTN 437 (616)
T ss_pred ccccCccceeecCCcceEEEEeCC
Confidence 347899999999999999998754
No 118
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=52.70 E-value=41 Score=33.98 Aligned_cols=60 Identities=7% Similarity=0.064 Sum_probs=32.8
Q ss_pred eEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----------------------cCCCCccEEEEeccCCeEEEEe
Q psy950 265 VVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----------------------SNLTNVVGVEFDYADDKILFTQ 322 (407)
Q Consensus 265 ~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----------------------~~~~~~~glAvDwi~~~LYwtd 322 (407)
++.|.+...++.||++.... +.|...++..+..-+ .+...|.=|.+-|.++.||||+
T Consensus 314 itDI~iSlDDrfLYvs~W~~-GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLH-GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETTT-TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEcccC-CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 46677888899999999988 888887776442100 1222567788889999999999
Q ss_pred CCC
Q psy950 323 IRP 325 (407)
Q Consensus 323 ~~~ 325 (407)
+-.
T Consensus 393 SLy 395 (461)
T PF05694_consen 393 SLY 395 (461)
T ss_dssp ---
T ss_pred ecc
Confidence 875
No 119
>PHA02887 EGF-like protein; Provisional
Probab=51.98 E-value=11 Score=30.42 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=14.5
Q ss_pred cceEEecCCCccccCCCCccc
Q psy950 208 LHYKCDCATGTPSASDPKKCT 228 (407)
Q Consensus 208 ~~~~C~C~~G~~l~~d~~~C~ 228 (407)
..+.|.|+.||. |..|.
T Consensus 106 ~epsCrC~~GYt----G~RCE 122 (126)
T PHA02887 106 DEKFCICNKGYT----GIRCD 122 (126)
T ss_pred CCceeECCCCcc----cCCCC
Confidence 368999999998 88885
No 120
>KOG4328|consensus
Probab=49.87 E-value=2.6e+02 Score=28.42 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=80.0
Q ss_pred CcceEEEEEEcCCC-EEEEEEecCCceEEEEeCCCCcccc-------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEE
Q psy950 262 LTNVVGVEFDYADD-KILFTQIRPWAKIAWIPTTNPSSAS-------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIP 333 (407)
Q Consensus 262 ~~~~~ald~d~~~~-~lywsd~~~~~~I~~~~~~~~~~~~-------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~ 333 (407)
-+++.+++|++.++ .+.-+-... +.|...++++.+... .-+..|.+|-+-+.+-.-...-+.. ++|...+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~-G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD-GtiR~~D 263 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKG-GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD-GTIRLQD 263 (498)
T ss_pred ccceEEEEecccCcceEEEEccCC-CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC-ceeeeee
Confidence 46788999999998 665554455 778888886433221 1112467777777666555555555 6777777
Q ss_pred CCCCc-c-ccc---CCCceeEEEEcCCCCeEEEE-eCCCCCcc-c---------------ccCCCCCCCcceeEEEeCCC
Q psy950 334 TTNPS-S-ASS---NLTNVVGVEFDYADDKILFT-QIRPWAKI-A---------------WIPTTNPSSASVNTILSRGK 391 (407)
Q Consensus 334 ~~~~~-r-l~~---~l~~P~~iavdp~~g~lywt-d~~~~~~i-a---------------~~dg~~~~~~~~~~l~~~~~ 391 (407)
+.+.. + +.+ .-..-.++.+....+-+++. +||....| - +|-+.++..-....|...+.
T Consensus 264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~ 343 (498)
T KOG4328|consen 264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL 343 (498)
T ss_pred ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence 66653 1 111 11223334444444433333 34422222 2 22233344445555667777
Q ss_pred ccceeeccchhhccCC
Q psy950 392 DEKAKIENEQDLGRKR 407 (407)
Q Consensus 392 ~~~~~~~~~~~~~~~~ 407 (407)
|+-++|=|-..|..|+
T Consensus 344 D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 344 DQTAKIWDLRQLRGKA 359 (498)
T ss_pred CcceeeeehhhhcCCC
Confidence 7777787777776553
No 121
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=49.66 E-value=1.1e+02 Score=28.01 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=43.5
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE------------eCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC
Q psy950 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV------------SNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107 (407)
Q Consensus 40 vdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~------------~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d 107 (407)
+....|.+|-.-|-.. +|.|.+-+.......+ .....-++|||-|+..+|+|.+-..-..+.-+.++
T Consensus 181 LE~VdG~lyANVw~t~-~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTT-RIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeec-ceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEec
Confidence 3455688886666554 7777776643332222 11233589999999999999987665555555554
Q ss_pred C
Q psy950 108 G 108 (407)
Q Consensus 108 G 108 (407)
+
T Consensus 260 ~ 260 (262)
T COG3823 260 E 260 (262)
T ss_pred C
Confidence 4
No 122
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=47.33 E-value=95 Score=31.48 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=31.9
Q ss_pred cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-C---C---------------CCCceeEEEeCCCCeEEEEe
Q psy950 35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-N---G---------------ISMPRDLTIDMQTHDVYWVD 95 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-~---~---------------~~~P~glaiD~~~~~lYw~d 95 (407)
+..|.|-...++||++.|.. ..|...++.-...-.++- . + .+-|.=|.+...++||||+.
T Consensus 314 itDI~iSlDDrfLYvs~W~~-GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWLH-GDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETTT-TEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEcccC-CcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 47788888899999999985 477777775543322221 0 0 12366677777788888887
Q ss_pred C
Q psy950 96 A 96 (407)
Q Consensus 96 ~ 96 (407)
+
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 5
No 123
>KOG4289|consensus
Probab=47.05 E-value=14 Score=42.30 Aligned_cols=18 Identities=28% Similarity=0.781 Sum_probs=14.4
Q ss_pred CcceEEecCCCccccCCCCccc
Q psy950 207 KLHYKCDCATGTPSASDPKKCT 228 (407)
Q Consensus 207 ~~~~~C~C~~G~~l~~d~~~C~ 228 (407)
..+|+|.||.||. |+.|.
T Consensus 1736 a~GY~C~C~~g~~----G~~Ce 1753 (2531)
T KOG4289|consen 1736 AHGYTCECPPGYT----GPYCE 1753 (2531)
T ss_pred CCceeEECCCccc----Ccchh
Confidence 3789999999987 66665
No 124
>KOG1219|consensus
Probab=46.29 E-value=17 Score=43.92 Aligned_cols=16 Identities=31% Similarity=1.001 Sum_probs=12.4
Q ss_pred ceEEecCCCccccCCCCccc
Q psy950 209 HYKCDCATGTPSASDPKKCT 228 (407)
Q Consensus 209 ~~~C~C~~G~~l~~d~~~C~ 228 (407)
+|.|.||+||. |++|.
T Consensus 3923 ~f~CnC~~gyT----G~~Ce 3938 (4289)
T KOG1219|consen 3923 GFLCNCPNGYT----GKRCE 3938 (4289)
T ss_pred CeeEeCCCCcc----Cceee
Confidence 68999999887 56665
No 125
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=46.13 E-value=1.1e+02 Score=30.41 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=42.7
Q ss_pred CEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc
Q psy950 45 RLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR 115 (407)
Q Consensus 45 g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~ 115 (407)
..||-+|......++..+++....+.|........-|..+-+.++.||+... ...+.+++++....+.++
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEE
T ss_pred EEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEE
Confidence 5666667655568999999988888777643333346777788889887653 268899999987776655
No 126
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=45.66 E-value=1.4e+02 Score=31.18 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=57.3
Q ss_pred eEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEcc
Q psy950 37 TSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRR 116 (407)
Q Consensus 37 ~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~ 116 (407)
.+++||+.+.|||---...| .+|..|. -.++..-.=+|||..++++-|.--.... ..-|+|.....+|..
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p------~~~~~r~---gdnl~~~s~vAld~~TG~~~W~~Q~~~~-D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSP------WNSHLRP---GDNLYTSSIVARDPDTGKIKWHYQTTPH-DEWDYDGVNEMILFD 307 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCC------CCCCCCC---CCCccceeEEEEccccCCEEEeeeCCCC-CCccccCCCCcEEEE
Confidence 56999999999997543222 4444441 1234455679999999999997532211 112555544433331
Q ss_pred --CCCCceEEE--E-eCCEEEEEeCCCCeEEEE
Q psy950 117 --NLPNPMGIA--V-HKSDVYWVDRNLRTVYKA 144 (407)
Q Consensus 117 --~~~~P~~la--v-~~~~lYwtd~~~~~I~~~ 144 (407)
....+.-+. . ..+.+|..|+.+++....
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~ 340 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSA 340 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCceecc
Confidence 112222222 2 238899999988866543
No 127
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=44.51 E-value=2.5e+02 Score=25.69 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=43.4
Q ss_pred eeEEEeCCCCeEEEEeC--CCCeEEEEecCCCeEEEEccCCC--Cc--eEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950 80 RDLTIDMQTHDVYWVDA--KLDLIQKISYNGGNRQIIRRNLP--NP--MGIAVHKSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 80 ~glaiD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~--~P--~~lav~~~~lYwtd~~~~~I~~~~~~~ 148 (407)
.||.++ +++||-+-. +...|.+.++++..... ...+. .- .||+..++.+|--.|..+.-+..++++
T Consensus 49 QGL~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~-s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t 120 (262)
T COG3823 49 QGLEYL--DGHILESTGLYGFSKIRVSDLTTGQEIF-SEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT 120 (262)
T ss_pred cceeee--CCEEEEeccccccceeEEEeccCceEEE-EeecCCccccccceeeccceEEEEEeccceeEEEChHH
Confidence 366666 457777765 34578888888654422 12222 22 478889999998888888766666654
No 128
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=43.73 E-value=20 Score=22.79 Aligned_cols=19 Identities=11% Similarity=0.289 Sum_probs=15.1
Q ss_pred CCceeEEEeCCCCeEEEEeC
Q psy950 77 SMPRDLTIDMQTHDVYWVDA 96 (407)
Q Consensus 77 ~~P~glaiD~~~~~lYw~d~ 96 (407)
..|.+||+|. .+.||++=.
T Consensus 13 ~~~~~IavD~-~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDS-NGNIYVTGY 31 (38)
T ss_pred eeEEEEEECC-CCCEEEEEe
Confidence 4699999998 567998754
No 129
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=42.05 E-value=4e+02 Score=27.34 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=33.4
Q ss_pred ceEEEeCCCCEEEEEEcCC-----------CCeEEEEe-CCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEe
Q psy950 36 TTSPFSPLPRLLYWIDYGQ-----------YPRIGKSY-LDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVD 95 (407)
Q Consensus 36 ~~iavdp~~g~lywtd~~~-----------~~~I~r~~-~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d 95 (407)
.=+|+|..+|.+-|.-... .+.+.... .||..+.+++-. ...-.-.|+|..++.+-|..
T Consensus 257 ~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-~~~G~l~ald~~tG~~~W~~ 327 (488)
T cd00216 257 SIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-PKNGFFYVLDRTTGKLISAR 327 (488)
T ss_pred eEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-CCCceEEEEECCCCcEeeEe
Confidence 5789999999999984311 12333332 566644333321 11223457777777777753
No 130
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=41.36 E-value=21 Score=29.38 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.8
Q ss_pred cceEEecCCCccccCCCCccc
Q psy950 208 LHYKCDCATGTPSASDPKKCT 228 (407)
Q Consensus 208 ~~~~C~C~~G~~l~~d~~~C~ 228 (407)
..+.|.|+.||. |..|.
T Consensus 65 ~~~~CrC~~GYt----GeRCE 81 (139)
T PHA03099 65 DGMYCRCSHGYT----GIRCQ 81 (139)
T ss_pred CCceeECCCCcc----ccccc
Confidence 368999999998 88896
No 131
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation. This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen
Probab=39.39 E-value=1.9e+02 Score=22.84 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=9.4
Q ss_pred ceEEecCCCcc
Q psy950 209 HYKCDCATGTP 219 (407)
Q Consensus 209 ~~~C~C~~G~~ 219 (407)
...|.|+.||.
T Consensus 97 ~~~C~Cl~GF~ 107 (110)
T PF00954_consen 97 SPKCSCLPGFE 107 (110)
T ss_pred CCceECCCCcC
Confidence 46899999986
No 132
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=39.30 E-value=2.6e+02 Score=24.42 Aligned_cols=108 Identities=9% Similarity=-0.058 Sum_probs=62.2
Q ss_pred ceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecC-CCeEEEE
Q psy950 36 TTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN-GGNRQII 114 (407)
Q Consensus 36 ~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~d-G~~~~~~ 114 (407)
..+...|...+|+.+... ..|...+++.......+......+..+...+. ++++.+....+.|...++. +.....+
T Consensus 55 ~~~~~~~~~~~l~~~~~~--~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 131 (289)
T cd00200 55 RDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTL 131 (289)
T ss_pred eEEEECCCCCEEEEEcCC--CeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEe
Confidence 488888877677666543 37777777754333333322335778888876 4566666567888888887 3333333
Q ss_pred ccCCCCceEEEEeC-CEEEEEeCCCCeEEEEec
Q psy950 115 RRNLPNPMGIAVHK-SDVYWVDRNLRTVYKASK 146 (407)
Q Consensus 115 ~~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~ 146 (407)
......+..+++.+ +.++.+....+.|...+.
T Consensus 132 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~ 164 (289)
T cd00200 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDL 164 (289)
T ss_pred ccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEc
Confidence 33333466777766 333333333444444443
No 133
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=39.15 E-value=3.4e+02 Score=25.63 Aligned_cols=63 Identities=13% Similarity=0.080 Sum_probs=42.3
Q ss_pred cCCCCccEEEE--eccCCeEEEEeCCCCCeEEEEECCCC---c-c--cccCC---CceeEEEEcCCCCeEEEEeC
Q psy950 301 SNLTNVVGVEF--DYADDKILFTQIRPWAKIAWIPTTNP---S-S--ASSNL---TNVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 301 ~~~~~~~glAv--Dwi~~~LYwtd~~~~~~I~v~~~~~~---~-r--l~~~l---~~P~~iavdp~~g~lywtd~ 364 (407)
++. .+.|+++ +..++-.|.--...++.|....+... . + ++..+ .+-+|++.|-..|+||-.+-
T Consensus 151 ~~s-~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIaeE 224 (364)
T COG4247 151 SSS-SAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAEE 224 (364)
T ss_pred Ccc-cceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEeec
Confidence 455 8888887 56666666554444477877665422 1 1 33322 57789999999999999863
No 134
>PLN00181 protein SPA1-RELATED; Provisional
Probab=36.33 E-value=6.1e+02 Score=27.79 Aligned_cols=106 Identities=10% Similarity=0.126 Sum_probs=0.0
Q ss_pred eeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEeccCCeEEEEeCCCCCeEEE
Q psy950 255 PFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDYADDKILFTQIRPWAKIAW 331 (407)
Q Consensus 255 ~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v 331 (407)
+...+.....+.++.+++..+....+-... +.|...++.+..... +-...+.++++.+..++++.+-+.. ++|.+
T Consensus 525 ~~~~~~~~~~v~~l~~~~~~~~~las~~~D-g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-g~v~i 602 (793)
T PLN00181 525 PVVELASRSKLSGICWNSYIKSQVASSNFE-GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDD-GSVKL 602 (793)
T ss_pred ceEEecccCceeeEEeccCCCCEEEEEeCC-CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCC-CEEEE
Q ss_pred EECCCCcc--cccCCCceeEEEEcCCCCeEEEE
Q psy950 332 IPTTNPSS--ASSNLTNVVGVEFDYADDKILFT 362 (407)
Q Consensus 332 ~~~~~~~r--l~~~l~~P~~iavdp~~g~lywt 362 (407)
-++..... ..........+...+..|.++.+
T Consensus 603 Wd~~~~~~~~~~~~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 603 WSINQGVSIGTIKTKANICCVQFPSESGRSLAF 635 (793)
T ss_pred EECCCCcEEEEEecCCCeEEEEEeCCCCCEEEE
No 135
>KOG1407|consensus
Probab=34.61 E-value=4e+02 Score=25.19 Aligned_cols=114 Identities=11% Similarity=0.166 Sum_probs=63.3
Q ss_pred cccceEEeecCCCCCeeeeEee-cCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cCCCCccEEEEecc
Q psy950 238 TRTEIRALHLDPTLTAVPFKTV-SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SNLTNVVGVEFDYA 314 (407)
Q Consensus 238 ~~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~~~~~~glAvDwi 314 (407)
....|+...+..... ...+ ...+++ -+.+.+.++++.+.+... .|..++.....+.. .+.-.+.-++.. .
T Consensus 85 ~dk~ir~wd~r~~k~---~~~i~~~~eni-~i~wsp~g~~~~~~~kdD--~it~id~r~~~~~~~~~~~~e~ne~~w~-~ 157 (313)
T KOG1407|consen 85 GDKTIRIWDIRSGKC---TARIETKGENI-NITWSPDGEYIAVGNKDD--RITFIDARTYKIVNEEQFKFEVNEISWN-N 157 (313)
T ss_pred CCceEEEEEeccCcE---EEEeeccCcce-EEEEcCCCCEEEEecCcc--cEEEEEecccceeehhcccceeeeeeec-C
Confidence 345566555543321 1112 223344 356778888877776654 34444433322222 222133445553 7
Q ss_pred CCeEEEEeCCCCCeEEEEECCCCccc---ccCCCceeEEEEcCCCCeE
Q psy950 315 DDKILFTQIRPWAKIAWIPTTNPSSA---SSNLTNVVGVEFDYADDKI 359 (407)
Q Consensus 315 ~~~LYwtd~~~~~~I~v~~~~~~~rl---~~~l~~P~~iavdp~~g~l 359 (407)
++++||...+. +.|++++.-...++ ...-.+=.-|.+||...|+
T Consensus 158 ~nd~Fflt~Gl-G~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 158 SNDLFFLTNGL-GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred CCCEEEEecCC-ceEEEEeccccccccccccCCcceEEEEECCCCceE
Confidence 88999999999 89999876644432 2222444578889876654
No 136
>KOG4227|consensus
Probab=33.83 E-value=2.7e+02 Score=27.76 Aligned_cols=71 Identities=14% Similarity=0.175 Sum_probs=43.8
Q ss_pred CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950 262 LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTT 335 (407)
Q Consensus 262 ~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~ 335 (407)
-.++..|+||..+..||=-... +.+..-++.+++.+- +.+ .|.+|.+.++ +|++-+-+.. +.+..++..
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~--~~VI~HDiEt~qsi~V~~~~~~~~-~VY~m~~~P~-DN~~~~~t~~-~~V~~~D~R 179 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERW--GTVIKHDIETKQSIYVANENNNRG-DVYHMDQHPT-DNTLIVVTRA-KLVSFIDNR 179 (609)
T ss_pred ccceEEEEEccCCeeEecCCCc--ceeEeeecccceeeeeecccCccc-ceeecccCCC-CceEEEEecC-ceEEEEecc
Confidence 3678999999877777632222 223333333322211 334 7889999888 7888777776 677776654
Q ss_pred CC
Q psy950 336 NP 337 (407)
Q Consensus 336 ~~ 337 (407)
..
T Consensus 180 d~ 181 (609)
T KOG4227|consen 180 DR 181 (609)
T ss_pred CC
Confidence 43
No 137
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=33.00 E-value=37 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.028 Sum_probs=18.6
Q ss_pred CCCceeEEEEcCCCCeEEEEe
Q psy950 343 NLTNVVGVEFDYADDKILFTQ 363 (407)
Q Consensus 343 ~l~~P~~iavdp~~g~lywtd 363 (407)
.-.-|.||.+|+..|.|.|+-
T Consensus 9 ~~~LP~gLs~d~~tG~isGtp 29 (49)
T PF05345_consen 9 GGGLPSGLSLDPSTGTISGTP 29 (49)
T ss_pred CCCCCCcEEEeCCCCEEEeec
Confidence 447899999999999999993
No 138
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=30.05 E-value=5.2e+02 Score=25.03 Aligned_cols=108 Identities=8% Similarity=0.046 Sum_probs=62.0
Q ss_pred CCCEEEEEEcCCCCeEEEEeCCCCCeEEEEe-CCC-CCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEc----c
Q psy950 43 LPRLLYWIDYGQYPRIGKSYLDGSKWTSIVS-NGI-SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIR----R 116 (407)
Q Consensus 43 ~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~-~~~-~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~----~ 116 (407)
.+.|.|.+||.+ .+...+..-...-++.. -++ +.-.| ++..++..|++|...+. ..+++.....-++. .
T Consensus 95 se~yvyvad~ss--GL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgf-LivdvsdpssP~lagrya~ 169 (370)
T COG5276 95 SEEYVYVADWSS--GLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGF-LIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred cccEEEEEcCCC--ceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcE-EEEECCCCCCceeeeeecc
Confidence 368999999864 56666665444333332 112 22233 34457899999985443 34455433332333 2
Q ss_pred CCCCceEEEEeCCEEEEEeCCCCeEEEEecCCCCCCcccEEcc
Q psy950 117 NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159 (407)
Q Consensus 117 ~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~~g~~~~~~~i~ 159 (407)
.......+++.+++-|.+.|..+ +..++... ..+++.+.
T Consensus 170 ~~~d~~~v~ISGn~AYvA~~d~G-L~ivDVSn---p~sPvli~ 208 (370)
T COG5276 170 PGGDTHDVAISGNYAYVAWRDGG-LTIVDVSN---PHSPVLIG 208 (370)
T ss_pred CCCCceeEEEecCeEEEEEeCCC-eEEEEccC---CCCCeEEE
Confidence 23334678999999999988765 44455443 34455554
No 139
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=29.29 E-value=4.6e+02 Score=24.25 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=47.1
Q ss_pred CCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--------cCCCCccEEEEeccCCeEEEEeCCC
Q psy950 261 NLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--------SNLTNVVGVEFDYADDKILFTQIRP 325 (407)
Q Consensus 261 ~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--------~~~~~~~glAvDwi~~~LYwtd~~~ 325 (407)
..+...+|||-+.++.||=.... ++|+.++........ .+.....|+.|++.-+.|.++....
T Consensus 25 ~ge~l~GID~Rpa~G~LYgl~~~--g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvvs~~G 95 (236)
T PF14339_consen 25 AGESLVGIDFRPANGQLYGLGST--GRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVVSNTG 95 (236)
T ss_pred CCCeEEEEEeecCCCCEEEEeCC--CcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEEccCC
Confidence 35778999999999999987433 569998876654221 3333688999999999999985543
No 140
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=28.91 E-value=1.9e+02 Score=23.63 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=39.4
Q ss_pred cceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeE
Q psy950 35 NTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111 (407)
Q Consensus 35 P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~ 111 (407)
-|-|++||..=+|-..|.... .|. +.- -.+.-.-.|+|+|+.++.+.-+.....+-...-+.|...
T Consensus 9 ~R~i~LDp~GYfiI~~d~~~~-~i~-a~h---------~~n~I~~~Gla~Dpetge~i~~~g~~~r~~~~~~~GrTA 74 (119)
T PF14251_consen 9 QRFIDLDPAGYFIIYVDREAG-EIC-AEH---------YTNDIDDKGLAVDPETGEVIPCRGKVKRTPSIVFKGRTA 74 (119)
T ss_pred cCccccCCCccEEEEEeCCCC-eee-Hhh---------ccCccCcccceeCCCCCCEEEEecCCCCceeEEEecCCH
Confidence 477999998555554554332 111 000 012224459999999999888887665555555666544
No 141
>KOG1539|consensus
Probab=28.52 E-value=2.6e+02 Score=30.67 Aligned_cols=75 Identities=9% Similarity=-0.003 Sum_probs=48.9
Q ss_pred CCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC-CCCeEEEEeCC--CCCceeEEEeCCCCeEEEEeCCCCeEEEEecCCC
Q psy950 33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD-GSKWTSIVSNG--ISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG 109 (407)
Q Consensus 33 ~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d-G~~~~~l~~~~--~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~ 109 (407)
-.-.++++++...+.|.--. .+.|.+.+|. |-.|....... -....|||+|..++ +-++-...+-+..-++.+.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S--~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~-~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYS--KGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR-LLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cceEEEEEeccCceEEEecc--CCeEEEEEcccCeeecccccCccccCceeEEEecCCCc-eEEEccCcceEEEEecCCc
Confidence 34689999999888886432 3589999998 65666553221 12568999998654 4444444555555555544
Q ss_pred e
Q psy950 110 N 110 (407)
Q Consensus 110 ~ 110 (407)
.
T Consensus 526 ~ 526 (910)
T KOG1539|consen 526 V 526 (910)
T ss_pred c
Confidence 3
No 142
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=28.14 E-value=5.4e+02 Score=26.05 Aligned_cols=95 Identities=15% Similarity=0.142 Sum_probs=57.0
Q ss_pred eecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcC-CCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEEeC
Q psy950 18 LRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDA 96 (407)
Q Consensus 18 ~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~-~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~d~ 96 (407)
.++.+...+++. .-..-..-++-|...+|.++-.. ..+.|+..+++|.+...|.+. .+.-..=.+-+.++.||++..
T Consensus 224 ~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~~~Ps~spdG~~ivf~Sd 301 (425)
T COG0823 224 DLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGINTSPSWSPDGSKIVFTSD 301 (425)
T ss_pred eccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-CccccCccCCCCCCEEEEEeC
Confidence 333344444444 22223445566777777766543 457999999999996665542 111112344566788888765
Q ss_pred CC--CeEEEEecCCCeEEEE
Q psy950 97 KL--DLIQKISYNGGNRQII 114 (407)
Q Consensus 97 ~~--~~I~~~~~dG~~~~~~ 114 (407)
.. -.|..++.+|+..+.+
T Consensus 302 r~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 302 RGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred CCCCcceEEECCCCCceeEe
Confidence 44 3599999998876443
No 143
>PF01826 TIL: Trypsin Inhibitor like cysteine rich domain; InterPro: IPR002919 This domain is found in proteinase inhibitors as well as in many extracellular proteins. The domain typically contains ten cysteine residues that form five disulphide bonds. The cysteine residues that form the disulphide bonds are 1-7, 2-6, 3-5, 4-10 and 8-9. This inhibitor domain belongs to MEROPS inhibitor family I8 (clan IA). Proteins containing this domain inhibit peptidases belonging to families S1 (IPR001254 from INTERPRO), S8 (IPR000209 from INTERPRO), and M4 (IPR001570 from INTERPRO) [] and are restricted to the chordata, nematoda, arthropoda and echinodermata. Examples of proteins containing this domain are: chymotrypsin/elastase inhibitor from Ascaris suum (pig roundworm) Acp62F protein from Drosophila melanogaster Bombina trypsin inhibitor from Bombina maxima (large-webbed bell toad) Bombyx subtilisin inhibitor from Bombyx mori (silk moth) von Willebrand factor ; PDB: 2P3F_N 1HX2_A 1CCV_A 1EAI_D 2H9E_C 1COU_A 1ATE_A 1ATB_A 1ATD_A 1ATA_A ....
Probab=27.99 E-value=28 Score=23.87 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=14.1
Q ss_pred EEecCCCccccCCCCcccc
Q psy950 211 KCDCATGTPSASDPKKCTT 229 (407)
Q Consensus 211 ~C~C~~G~~l~~d~~~C~~ 229 (407)
-|.|+.||.++.+ ..|+.
T Consensus 34 gC~C~~G~v~~~~-~~CV~ 51 (55)
T PF01826_consen 34 GCFCPPGYVRNDN-GRCVP 51 (55)
T ss_dssp EEEETTTEEEETT-SEEEE
T ss_pred cCCCCCCeeEcCC-CCEEc
Confidence 4999999997655 67864
No 144
>KOG0918|consensus
Probab=27.26 E-value=4.2e+02 Score=26.65 Aligned_cols=93 Identities=12% Similarity=0.084 Sum_probs=47.8
Q ss_pred ceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEEeCCCCCceeEEEeCCCCeEEEE-eCCCCeEEEEecCCCeEEEE
Q psy950 36 TTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWV-DAKLDLIQKISYNGGNRQII 114 (407)
Q Consensus 36 ~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~~~~~~~P~glaiD~~~~~lYw~-d~~~~~I~~~~~dG~~~~~~ 114 (407)
+.|-|.-..++||++.|-- +-|.+.++.-..+..|.- .-+.-|+. +......-.. +.....++.-..-|+..
T Consensus 315 TDilISmDDRFLYvs~WLH-GDirQYdIsDP~n~kLtg--Qi~lGG~i-~~~s~vkvl~~e~~~~~~ea~~vKGrkl--- 387 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLH-GDIRQYDISDPKNPKLTG--QIFLGGSI-QKGSPVKVLEEEGLKKQPEALYVKGRKL--- 387 (476)
T ss_pred heeEEeecCcEEEEEeeee-cceeeeccCCCCCcceEE--EEEECcEe-ecCCceEEeccccccCCCccceecCccc---
Confidence 5666667799999999963 477777765443332221 11111111 1100000001 11112233332333222
Q ss_pred ccCCCCceEEEEeCCEEEEEeC
Q psy950 115 RRNLPNPMGIAVHKSDVYWVDR 136 (407)
Q Consensus 115 ~~~~~~P~~lav~~~~lYwtd~ 136 (407)
+..++-..|++++.+||.|..
T Consensus 388 -~GGPQMlQLSLDGKRLYVt~S 408 (476)
T KOG0918|consen 388 -RGGPQMLQLSLDGKRLYVTNS 408 (476)
T ss_pred -cCCceeEEeccCCcEEEEEch
Confidence 457778889999999999863
No 145
>KOG0973|consensus
Probab=24.80 E-value=6.4e+02 Score=28.32 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCccc
Q psy950 265 VVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA 340 (407)
Q Consensus 265 ~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl 340 (407)
+..+.+++ +..+..+=... ++|...+...-.... ..+ .|-|+++|++++ |++.++..++|.+-.....+.
T Consensus 132 V~Dv~Wsp-~~~~lvS~s~D-nsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gk--y~ASqsdDrtikvwrt~dw~i- 205 (942)
T KOG0973|consen 132 VLDVNWSP-DDSLLVSVSLD-NSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGK--YFASQSDDRTLKVWRTSDWGI- 205 (942)
T ss_pred cceeccCC-CccEEEEeccc-ceEEEEccccceeeeeeecccc-cccceEECCccC--eeeeecCCceEEEEEccccee-
Confidence 44455555 33344443333 445444443332222 334 889999999999 777666546777766544321
Q ss_pred ccCCCceeEEEEcCCCCeEEEEeCCCCCcc-cccCCCCCCCcceeEEEeCCCccce
Q psy950 341 SSNLTNVVGVEFDYADDKILFTQIRPWAKI-AWIPTTNPSSASVNTILSRGKDEKA 395 (407)
Q Consensus 341 ~~~l~~P~~iavdp~~g~lywtd~~~~~~i-a~~dg~~~~~~~~~~l~~~~~~~~~ 395 (407)
.....+|..= -|..-+.+=-.|...+++ |.....| .+.....|+.+ +.|++
T Consensus 206 ~k~It~pf~~--~~~~T~f~RlSWSPDG~~las~nA~n-~~~~~~~IieR-~tWk~ 257 (942)
T KOG0973|consen 206 EKSITKPFEE--SPLTTFFLRLSWSPDGHHLASPNAVN-GGKSTIAIIER-GTWKV 257 (942)
T ss_pred eEeeccchhh--CCCcceeeecccCCCcCeecchhhcc-CCcceeEEEec-CCcee
Confidence 1122222220 112223333455555555 5555566 34444446666 44554
No 146
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=24.38 E-value=2.1e+02 Score=18.63 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=20.9
Q ss_pred CceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950 120 NPMGIAVHKSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 120 ~P~~lav~~~~lYwtd~~~~~I~~~~~~~ 148 (407)
...+|++.++++|.+++..+ +..++...
T Consensus 3 ~a~~v~v~g~yaYva~~~~G-l~IvDISn 30 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNG-LVIVDISN 30 (42)
T ss_pred eEEEEEEECCEEEEEeCCCC-EEEEECCC
Confidence 35688999999999988755 55566553
No 147
>KOG1446|consensus
Probab=24.07 E-value=6.5e+02 Score=24.22 Aligned_cols=136 Identities=17% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCCccEEEEEEeeeeecCCcceEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCC---CCCeEEEE-e-CCCC
Q psy950 3 STLALASLIWAIRLALRLLKKKKKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLD---GSKWTSIV-S-NGIS 77 (407)
Q Consensus 3 ~~~~~~~~~~s~~~~~~~~~~~~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~d---G~~~~~l~-~-~~~~ 77 (407)
+-+++-..+|.+|+ +.+..++. +..+--.|+||+ |.+|-+-.+.+ .|...++- ....+++. . ....
T Consensus 118 ~S~D~tvrLWDlR~-----~~cqg~l~--~~~~pi~AfDp~-GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ 188 (311)
T KOG1446|consen 118 SSLDKTVRLWDLRV-----KKCQGLLN--LSGRPIAAFDPE-GLIFALANGSE-LIKLYDLRSFDKGPFTTFSITDNDEA 188 (311)
T ss_pred cccCCeEEeeEecC-----CCCceEEe--cCCCcceeECCC-CcEEEEecCCC-eEEEEEecccCCCCceeEccCCCCcc
Confidence 34455566776663 34444433 445667899998 88888877765 77766653 32233322 2 1223
Q ss_pred CceeEEEeCCCCeEEEEeCCCCeEEEEe-cCCCeEEEEc---cCCCCceEEEEeC-CEEEEEeCCCCeEEEEecCC
Q psy950 78 MPRDLTIDMQTHDVYWVDAKLDLIQKIS-YNGGNRQIIR---RNLPNPMGIAVHK-SDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~-~dG~~~~~~~---~~~~~P~~lav~~-~~lYwtd~~~~~I~~~~~~~ 148 (407)
.-+.|-..+.++-|..+.. .+.|..++ ++|.-...+. ....-|.+-++-+ ++...+-...++|..-+..+
T Consensus 189 ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~t 263 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLET 263 (311)
T ss_pred ceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCC
Confidence 3456666665555544443 23333333 4666444443 3344554444445 44445555557777777665
No 148
>PF08290 Hep_core_N: Hepatitis core protein, putative zinc finger; InterPro: IPR013195 This entry represent a short region found at the N terminus of some viral capsid (HBcAg) proteins from various Hepatitis B virus (HBV), which is a major human pathogen. The conservation of four Cys residues suggests that this region acts as a zinc binding domain. Hepatitis virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005198 structural molecule activity, 0009405 pathogenesis
Probab=23.87 E-value=41 Score=19.57 Aligned_cols=10 Identities=30% Similarity=0.757 Sum_probs=7.5
Q ss_pred eEEecCCCcc
Q psy950 210 YKCDCATGTP 219 (407)
Q Consensus 210 ~~C~C~~G~~ 219 (407)
..|.||.+..
T Consensus 10 iscscpt~qa 19 (27)
T PF08290_consen 10 ISCSCPTVQA 19 (27)
T ss_pred eeccCCcchh
Confidence 5799998653
No 149
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=23.72 E-value=5.1e+02 Score=22.83 Aligned_cols=58 Identities=10% Similarity=0.148 Sum_probs=38.3
Q ss_pred CCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceE-EEEeCCEEEEEeCCCCeEEEEecCC
Q psy950 88 THDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMG-IAVHKSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 88 ~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~-lav~~~~lYwtd~~~~~I~~~~~~~ 148 (407)
+++||.+..... +..+++....+.. ......+.+ ....++.||.++ ..+.|+.++..+
T Consensus 173 ~~~v~~~~~~g~-~~~~d~~tg~~~w-~~~~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~t 231 (238)
T PF13360_consen 173 DGRVYVSSGDGR-VVAVDLATGEKLW-SKPISGIYSLPSVDGGTLYVTS-SDGRLYALDLKT 231 (238)
T ss_dssp TTEEEEECCTSS-EEEEETTTTEEEE-EECSS-ECECEECCCTEEEEEE-TTTEEEEEETTT
T ss_pred CCEEEEEcCCCe-EEEEECCCCCEEE-EecCCCccCCceeeCCEEEEEe-CCCEEEEEECCC
Confidence 458888876554 4444776655433 222455666 667779999998 678898888876
No 150
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=23.67 E-value=1.1e+02 Score=24.90 Aligned_cols=50 Identities=14% Similarity=0.103 Sum_probs=31.4
Q ss_pred cEEEEeccCCeEEEEeCCCCCeEEEEECCCCcccccCCCceeEEEEcCCCCeEEEEeC
Q psy950 307 VGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQI 364 (407)
Q Consensus 307 ~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~rl~~~l~~P~~iavdp~~g~lywtd~ 364 (407)
.-|++|+-+=-|-..|... +.|..- -..+.-.-+|+|+||.+|...=+.-
T Consensus 10 R~i~LDp~GYfiI~~d~~~-~~i~a~-------h~~n~I~~~Gla~Dpetge~i~~~g 59 (119)
T PF14251_consen 10 RFIDLDPAGYFIIYVDREA-GEICAE-------HYTNDIDDKGLAVDPETGEVIPCRG 59 (119)
T ss_pred CccccCCCccEEEEEeCCC-CeeeHh-------hccCccCcccceeCCCCCCEEEEec
Confidence 3467777774444456655 444211 1245555669999999999976653
No 151
>KOG2110|consensus
Probab=23.38 E-value=7.4e+02 Score=24.56 Aligned_cols=99 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred eeeeecccceEEeecCCCCCeeeeEeecC-CcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc------cCCCC
Q psy950 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSN-LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS------SNLTN 305 (407)
Q Consensus 233 ~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~-~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~------~~~~~ 305 (407)
+|.|........+.+-+...-.++..+.. -..+.+|+|++.+..|==+.... ..|++.....++... -.. +
T Consensus 143 ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG-TVIRVf~v~~G~kl~eFRRG~~~~-~ 220 (391)
T KOG2110|consen 143 YLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG-TVIRVFSVPEGQKLYEFRRGTYPV-S 220 (391)
T ss_pred eEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc-eEEEEEEcCCccEeeeeeCCceee-E
Q ss_pred ccEEEEeccCCeEEEEeCCCCCeEEEEECC
Q psy950 306 VVGVEFDYADDKILFTQIRPWAKIAWIPTT 335 (407)
Q Consensus 306 ~~glAvDwi~~~LYwtd~~~~~~I~v~~~~ 335 (407)
+..|+++..+..|=-+.+.. +|.++.++
T Consensus 221 IySL~Fs~ds~~L~~sS~Te--TVHiFKL~ 248 (391)
T KOG2110|consen 221 IYSLSFSPDSQFLAASSNTE--TVHIFKLE 248 (391)
T ss_pred EEEEEECCCCCeEEEecCCC--eEEEEEec
No 152
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=23.37 E-value=6.9e+02 Score=24.22 Aligned_cols=116 Identities=17% Similarity=0.143 Sum_probs=63.5
Q ss_pred eEEEcCCCCCcceEEEeCCCCEEEEEEcCCCCeEEEEeCCCCCeEEEE-eCCCCCceeE-EEeCCCCeEEEEeCCCC--e
Q psy950 25 KKLKTSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIV-SNGISMPRDL-TIDMQTHDVYWVDAKLD--L 100 (407)
Q Consensus 25 ~~l~~~~~~~P~~iavdp~~g~lywtd~~~~~~I~r~~~dG~~~~~l~-~~~~~~P~gl-aiD~~~~~lYw~d~~~~--~ 100 (407)
.+++.+--..|..=.+-+...+.|-++.+. .+.-.+.+|...-+++ +-+-..|.++ ++--.+.+.|.+|...+ .
T Consensus 204 Pvli~~~n~g~g~~sv~vsdnr~y~vvy~e--gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~ 281 (370)
T COG5276 204 PVLIGSYNTGPGTYSVSVSDNRAYLVVYDE--GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPI 281 (370)
T ss_pred CeEEEEEecCCceEEEEecCCeeEEEEccc--ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCcee
Confidence 334433333343334444455667776653 4566666665533333 3333455555 23334688999996543 2
Q ss_pred EEEEecCCCeEEE-EccCCCCceEEEEeCCEEEEEeCCCCeEE
Q psy950 101 IQKISYNGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRNLRTVY 142 (407)
Q Consensus 101 I~~~~~dG~~~~~-~~~~~~~P~~lav~~~~lYwtd~~~~~I~ 142 (407)
|...+.-+....- +.....+..||.++++++|..|...+.|.
T Consensus 282 idisnp~spfl~ss~~t~g~~a~gi~ay~~y~yiadkn~g~vV 324 (370)
T COG5276 282 IDISNPPSPFLSSSLDTAGYQAAGIRAYGNYNYIADKNTGAVV 324 (370)
T ss_pred EeccCCCCCchhccccCCCccccceEEecCeeEeccCCceEEE
Confidence 3333322222211 11344577899999999999988866553
No 153
>TIGR01492 CPW_WPC Plasmodium falciparum CPW-WPC domain. This model represents a domain of about 61 residues in length with six well-conserved cysteine residues and six well-conserved aromatic sites. The domain can be found in tandem repeats, and is known so far only in Plasmodium falciparum. It is named for motifs of CPxxW and (less well conserved) WPC.
Probab=23.22 E-value=42 Score=23.94 Aligned_cols=25 Identities=24% Similarity=0.515 Sum_probs=18.3
Q ss_pred ceEEecCCCccccCCCCccccccee
Q psy950 209 HYKCDCATGTPSASDPKKCTTMDEY 233 (407)
Q Consensus 209 ~~~C~C~~G~~l~~d~~~C~~~~~~ 233 (407)
.|.=.||.||.+..++..|.+++.|
T Consensus 5 dYs~~CP~~W~~~~~~~~C~ap~~Y 29 (62)
T TIGR01492 5 NYSSPCPENWIQKNDKYGCIAPDNY 29 (62)
T ss_pred ccCccCCccceecCCCCeeCCCccc
Confidence 4667899999877777678865443
No 154
>PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A ....
Probab=23.14 E-value=2e+02 Score=21.70 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=19.3
Q ss_pred EEEEcCCCCeEEEEeCCCCCeEEEEeCC
Q psy950 48 YWIDYGQYPRIGKSYLDGSKWTSIVSNG 75 (407)
Q Consensus 48 ywtd~~~~~~I~r~~~dG~~~~~l~~~~ 75 (407)
||||.... +|+.+..-+..-++++..+
T Consensus 2 FWSdQ~~~-~iq~~G~~~~~~~~v~rg~ 28 (85)
T PF14759_consen 2 FWSDQYGV-RIQIAGLPGGADEVVVRGD 28 (85)
T ss_dssp EEEEETTE-EEEEEE-STTSSEEEEEEE
T ss_pred eecccCCC-eEEEEECCCCCCEEEEEcc
Confidence 89998865 9999998766555666543
No 155
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=22.79 E-value=5.3e+02 Score=22.70 Aligned_cols=97 Identities=12% Similarity=-0.020 Sum_probs=58.0
Q ss_pred CCEEEEEEcCCCCeEEEEeC-CCCCeEEEEe-CCCCCceeEEEeCCCCeEEEEeCCCCeEEEEe-cCCCeEEEE-c-c--
Q psy950 44 PRLLYWIDYGQYPRIGKSYL-DGSKWTSIVS-NGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS-YNGGNRQII-R-R-- 116 (407)
Q Consensus 44 ~g~lywtd~~~~~~I~r~~~-dG~~~~~l~~-~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~-~dG~~~~~~-~-~-- 116 (407)
.+++|..+.. ..|...+. +|...-..-. ..+..+ .+++ +++||+... .+.|..++ .+|.-.-.. . .
T Consensus 36 ~~~v~~~~~~--~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~~--~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~ 108 (238)
T PF13360_consen 36 GGRVYVASGD--GNLYALDAKTGKVLWRFDLPGPISGA--PVVD--GGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSP 108 (238)
T ss_dssp TTEEEEEETT--SEEEEEETTTSEEEEEEECSSCGGSG--EEEE--TTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSC
T ss_pred CCEEEEEcCC--CEEEEEECCCCCEEEEeeccccccce--eeec--ccccccccc-eeeeEecccCCcceeeeecccccc
Confidence 6888887543 47777776 5643222211 112222 2343 588888874 34889988 466665442 2 1
Q ss_pred --CCCCceEEEEeCCEEEEEeCCCCeEEEEecCC
Q psy950 117 --NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA 148 (407)
Q Consensus 117 --~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~ 148 (407)
....+...++.++.+|.... .+.|..++..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~t 141 (238)
T PF13360_consen 109 PAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKT 141 (238)
T ss_dssp TCSTB--SEEEEETTEEEEEET-CSEEEEEETTT
T ss_pred ccccccccCceEecCEEEEEec-cCcEEEEecCC
Confidence 13355667778888988876 56788888775
No 156
>KOG0266|consensus
Probab=22.20 E-value=8.3e+02 Score=24.75 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=0.0
Q ss_pred ecccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---cCCCCccEEEEec
Q psy950 237 STRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---SNLTNVVGVEFDY 313 (407)
Q Consensus 237 s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~~~~~~~glAvDw 313 (407)
+....|+-..+ ................+.+++|++.+ .++.+-... +.|+..++.+..... +-.+.+.++++..
T Consensus 222 s~D~tiriwd~-~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D-~tvriWd~~~~~~~~~l~~hs~~is~~~f~~ 298 (456)
T KOG0266|consen 222 SDDKTLRIWDL-KDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDD-GTVRIWDVRTGECVRKLKGHSDGISGLAFSP 298 (456)
T ss_pred cCCceEEEeec-cCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCC-CcEEEEeccCCeEEEeeeccCCceEEEEECC
Q ss_pred cCCeEEEEeCCCCCeEEEEECCCCc----ccccCCCce---eEEEEcCCCCeEE
Q psy950 314 ADDKILFTQIRPWAKIAWIPTTNPS----SASSNLTNV---VGVEFDYADDKIL 360 (407)
Q Consensus 314 i~~~LYwtd~~~~~~I~v~~~~~~~----rl~~~l~~P---~~iavdp~~g~ly 360 (407)
.++.|.-. +.. +.|.+-++.+.. ........+ ..+..+|...+++
T Consensus 299 d~~~l~s~-s~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 299 DGNLLVSA-SYD-GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred CCCEEEEc-CCC-ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
No 157
>KOG0650|consensus
Probab=22.06 E-value=2.5e+02 Score=29.63 Aligned_cols=69 Identities=10% Similarity=0.181 Sum_probs=52.3
Q ss_pred cceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc----cCCCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCC
Q psy950 263 TNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS----SNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNP 337 (407)
Q Consensus 263 ~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~----~~~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~ 337 (407)
..+.++.|++..-++|++.... +...++.....+. +.. -+.+||+++-++||....... ++-|++++-.
T Consensus 567 G~vq~v~FHPs~p~lfVaTq~~---vRiYdL~kqelvKkL~tg~k-wiS~msihp~GDnli~gs~d~--k~~WfDldls 639 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQRS---VRIYDLSKQELVKKLLTGSK-WISSMSIHPNGDNLILGSYDK--KMCWFDLDLS 639 (733)
T ss_pred CceeEEEecCCCceEEEEeccc---eEEEehhHHHHHHHHhcCCe-eeeeeeecCCCCeEEEecCCC--eeEEEEcccC
Confidence 3467889999999999998776 4444554433222 555 788999999999999887775 7999998855
No 158
>KOG4260|consensus
Probab=21.82 E-value=41 Score=31.56 Aligned_cols=34 Identities=24% Similarity=0.558 Sum_probs=24.4
Q ss_pred CCCCccCCCcccc--cccceecCCCCCCCCcceEEecCCCcccc
Q psy950 180 ENNPCFRTGNGGC--EQLCFSYPVEFPQNKLHYKCDCATGTPSA 221 (407)
Q Consensus 180 ~~n~C~~~~ng~C--s~lC~~~~~~~~~~~~~~~C~C~~G~~l~ 221 (407)
..|+|.. .-..| .|+|+++.+ +|+|.|..||.-.
T Consensus 235 DvnEC~~-ep~~c~~~qfCvNteG-------Sf~C~dk~Gy~~g 270 (350)
T KOG4260|consen 235 DVNECQN-EPAPCKAHQFCVNTEG-------SFKCEDKEGYKKG 270 (350)
T ss_pred cHHHHhc-CCCCCChhheeecCCC-------ceEecccccccCC
Confidence 4567764 23344 589999876 6999999998743
No 159
>KOG4328|consensus
Probab=20.97 E-value=5.2e+02 Score=26.35 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=65.7
Q ss_pred ceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc--cC---CCCccEEEEeccCCeEEEEeCCCCCeEEEEECCCCc
Q psy950 264 NVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS--SN---LTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS 338 (407)
Q Consensus 264 ~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~--~~---~~~~~glAvDwi~~~LYwtd~~~~~~I~v~~~~~~~ 338 (407)
.+.+|.|.+.+-.-+++.+.. +.|...++.+....+ .+ .....++.+---.+++|+.+.-. -..++++....
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyD-GtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G--~f~~iD~R~~~ 312 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYD-GTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG--NFNVIDLRTDG 312 (498)
T ss_pred cccceEecCCChhheeeeccC-ceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc--ceEEEEeecCC
Confidence 355678887776666666666 788888887764332 21 11455666666778888876653 46777765332
Q ss_pred c----cccCCCceeEEEEcCCCCeEEEEeCC-CCCcc
Q psy950 339 S----ASSNLTNVVGVEFDYADDKILFTQIR-PWAKI 370 (407)
Q Consensus 339 r----l~~~l~~P~~iavdp~~g~lywtd~~-~~~~i 370 (407)
. +.-.-.+..+|+++|.+.+.+-|--- ..++|
T Consensus 313 s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kI 349 (498)
T KOG4328|consen 313 SEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKI 349 (498)
T ss_pred ccchhhhhhhcccceeecCCCCchheeecccCcceee
Confidence 1 11122399999999999888877432 24445
No 160
>KOG0319|consensus
Probab=20.96 E-value=1.1e+03 Score=25.65 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=66.6
Q ss_pred ccceEEeecCCCCCeeeeEeecCCcceEEEEEEcCCCEEEEEEecCCceEEEEeCCCCcccc---c--CCCCccEEEEec
Q psy950 239 RTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSAS---S--NLTNVVGVEFDY 313 (407)
Q Consensus 239 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~lywsd~~~~~~I~~~~~~~~~~~~---~--~~~~~~glAvDw 313 (407)
.+.|..+.+.+.....|.........+.++++++.+++||.+-... -+....+..+.... . -+ -+..||+|+
T Consensus 39 ~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~--llrv~~L~tgk~irswKa~He~-Pvi~ma~~~ 115 (775)
T KOG0319|consen 39 GDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQ--LLRVWSLPTGKLIRSWKAIHEA-PVITMAFDP 115 (775)
T ss_pred CceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccc--eEEEEEcccchHhHhHhhccCC-CeEEEEEcC
Confidence 3445556554433222222223345578899999999998876654 35556665553332 2 23 678999999
Q ss_pred cCCeEEEEeCCCCCeEEEEECCCCcccc--cCC-CceeEEEEcCC
Q psy950 314 ADDKILFTQIRPWAKIAWIPTTNPSSAS--SNL-TNVVGVEFDYA 355 (407)
Q Consensus 314 i~~~LYwtd~~~~~~I~v~~~~~~~rl~--~~l-~~P~~iavdp~ 355 (407)
-+ .|.=|-.-. +++.|-+..+.+.+. .+. .-...+..+|.
T Consensus 116 ~g-~LlAtggaD-~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~ 158 (775)
T KOG0319|consen 116 TG-TLLATGGAD-GRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPH 158 (775)
T ss_pred CC-ceEEecccc-ceEEEEEeeCCEEEEEecCCCceEEEEEeCCc
Confidence 88 455555555 788888888776432 232 34445555555
No 161
>KOG4649|consensus
Probab=20.22 E-value=2e+02 Score=27.24 Aligned_cols=52 Identities=10% Similarity=0.098 Sum_probs=35.7
Q ss_pred CceeEEEeCCCCeEEEEeCCCCeEEEEecCCCeEEEEccCCCCceEEEEeCCEEEEEeCCCC
Q psy950 78 MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLR 139 (407)
Q Consensus 78 ~P~glaiD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~P~~lav~~~~lYwtd~~~~ 139 (407)
.-.-+|||+..+.+||-.....+||...+- ..+. .=|--+.+.||+.+..++
T Consensus 32 s~~~~avd~~sG~~~We~ilg~RiE~sa~v-------vgdf---VV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILGVRIECSAIV-------VGDF---VVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred CceEEEecCCCCcEEeehhhCceeeeeeEE-------ECCE---EEEEEccCcEEEEEecch
Confidence 345689999999999999888899875432 1111 222335677888777766
Done!