RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy950
(407 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 188 bits (477), Expect = 4e-53
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 10/229 (4%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 523 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 582
Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ +
Sbjct: 583 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDV---NLL 639
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C NGGC+ LC P + + + C C
Sbjct: 640 AENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAP-QINPHSPKFTCACPD 697
Query: 217 GTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNV 265
G A D + C T E V + T L + T T + +
Sbjct: 698 GMLLARDMRSCLTEAEAAVATQETSTVRLKVSSTAVRTQHTTTRPVPDT 746
Score = 75.6 bits (185), Expect = 8e-15
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 16/134 (11%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVD 95
+YW D Q I + LD S + +++S I P L +D ++YW D
Sbjct: 431 TEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 489
Query: 96 AKLDLIQKISYNGGNRQ-IIRRNLPNPMGIAVH--KSDVYWVDRNLR-TVYKAS------ 145
+ L + G R+ + R N P I V +YW D + K
Sbjct: 490 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 549
Query: 146 -KLASTNITLPTPI 158
L + NI P I
Sbjct: 550 YSLVTENIQWPNGI 563
Score = 41.7 bits (97), Expect = 4e-04
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 48 YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
++ + + K LD S++TS++ N + L ++ ++ +YW D +I +
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLD 454
Query: 108 GGN-----RQIIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
+ +I R++ P G+AV S++YW D L TV A TL R
Sbjct: 455 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRE 511
Query: 161 GLSGLRDIAI 170
S R I +
Sbjct: 512 NGSKPRAIVV 521
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 170 bits (431), Expect = 4e-47
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 10/196 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 505 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 564
Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 565 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 621
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C NGGC+ LC P P + + C C
Sbjct: 622 AENLLSPEDMVLFHQLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 679
Query: 217 GTPSASDPKKCTTMDE 232
G A D + C T E
Sbjct: 680 GMLLARDMRSCLTEAE 695
Score = 44.4 bits (104), Expect = 6e-05
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 11/130 (8%)
Query: 48 YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
++ + + K LD S++TS++ N + L ++ ++ +YW D +I +
Sbjct: 378 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLD 436
Query: 108 GGNRQ-----IIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
+ +I R++ P G+AV S++YW D L TV A TL R
Sbjct: 437 RAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRE 493
Query: 161 GLSGLRDIAI 170
S R I +
Sbjct: 494 QGSKPRAIVV 503
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 156 bits (394), Expect = 1e-43
Identities = 63/193 (32%), Positives = 97/193 (50%), Gaps = 10/193 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 211 PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 270
Query: 102 QKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 271 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---L 327
Query: 159 RTGLSGLRDIAIFDIVNQPPDENNPCFRT--GNGGCEQLCFSYPVEFPQNKLHYKCDCAT 216
L D+ +F + QP N C RT NGGC+ LC P P + + C C
Sbjct: 328 AENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACPD 385
Query: 217 GTPSASDPKKCTT 229
G A D + C T
Sbjct: 386 GMLLARDMRSCLT 398
Score = 73.3 bits (179), Expect = 2e-14
Identities = 33/132 (25%), Positives = 49/132 (37%), Gaps = 16/132 (12%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDG----SKWTSIVSNGISMPRDLTIDMQTHDVYWVDAK 97
+YW D Q I + LD S + +++S I P L +D ++YW D+
Sbjct: 121 VASNRIYWSDLSQR-MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV 179
Query: 98 LDLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKAS-------K 146
L + G R+ + R N P I V +YW D + K
Sbjct: 180 LGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239
Query: 147 LASTNITLPTPI 158
L + NI P I
Sbjct: 240 LVTENIQWPNGI 251
Score = 44.8 bits (105), Expect = 3e-05
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 72 VSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN-----RQIIRRNLPNPMGIAV 126
+ + L ++ ++ +YW D +I + + +I R++ P G+AV
Sbjct: 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAV 166
Query: 127 --HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
S++YW D L TV A TL R S R I +
Sbjct: 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKTL---FRENGSKPRAIVV 209
Score = 42.9 bits (100), Expect = 1e-04
Identities = 33/187 (17%), Positives = 62/187 (33%), Gaps = 17/187 (9%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTE 241
N C NGGC +C + Y+C C G ++C +DE T ++
Sbjct: 1 NEC-LDNNGGCSHVCNDLKI-------GYECLCPDGF-QLVAQRRCEDIDECQDPDTCSQ 51
Query: 242 IRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASS 301
+ L LF R + + + +S
Sbjct: 52 LCVNLEGGYKCQCEEGFQ--LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIP 109
Query: 302 NLTNVVGVEFDYADDKILFTQIRPWA-KIAWIPTTNPSSA-----SSNLTNVVGVEFDYA 355
NL NVV ++ + A ++I ++ + + + S+ S ++ G+ D+
Sbjct: 110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 169
Query: 356 DDKILFT 362
I +T
Sbjct: 170 HSNIYWT 176
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 154 bits (390), Expect = 9e-42
Identities = 79/335 (23%), Positives = 146/335 (43%), Gaps = 16/335 (4%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+ I
Sbjct: 136 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 195
Query: 102 QKISYNGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
K + +G NRQ ++ +LP+P + + + +YW D + ++ +K + I +
Sbjct: 196 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE---IHS 252
Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
+ DI F QP N NGGC LC P K Y+C C TG
Sbjct: 253 DIFSPMDIHAFSQQRQPNATNPCGID--NGGCSHLCLMSP-----VKPFYQCACPTGVKL 305
Query: 221 ASDPKKCTTMD-EYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILF 279
+ K C E L+ + RT++R + LD + ++ + + +++D + I +
Sbjct: 306 LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYW 365
Query: 280 TQIRPWA-KIAWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFT-QIRPWAKIAWIPTTN 336
T A + ++I + ++ + + G+ D+ + +T ++ + T
Sbjct: 366 TDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425
Query: 337 PSSA-SSNLTNVVGVEFDYADDKILFTQIRPWAKI 370
S +L + D + +T KI
Sbjct: 426 RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKI 460
Score = 122 bits (307), Expect = 2e-30
Identities = 49/187 (26%), Positives = 81/187 (43%), Gaps = 15/187 (8%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G+ P+I ++ LDGS +V+ + P L +D +YW DAK D I
Sbjct: 444 PMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKI 503
Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
+ ++ +G R+ ++ +P+ G + VYW D R++ + K ++ +
Sbjct: 504 EVMNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVI------ 557
Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
+ L D+ N + NGGC LC P +C C G
Sbjct: 558 -IDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRPQG-------LRCACPIGFEL 609
Query: 221 ASDPKKC 227
SD K C
Sbjct: 610 ISDMKTC 616
Score = 75.6 bits (185), Expect = 6e-15
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKW-TSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
F L+YW D + I ++ + ++ ++V +G+ P L D +YW D++
Sbjct: 47 FVFSHGLIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 105
Query: 99 DLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRN-LRTVYKASKLASTNITL 154
+ I+ + +G R+ + + L P IA+ S +YW D + + +A S+ +
Sbjct: 106 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 165
Query: 155 PT 156
Sbjct: 166 IN 167
Score = 48.3 bits (114), Expect = 3e-06
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 8/151 (5%)
Query: 226 KCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPW 285
L+++ R ++R + V L + V+F ++ I ++ +
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDATNGKENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEE 62
Query: 286 A-KIAWIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA-- 340
A K T S L + G+ D+ +K+ +T +I
Sbjct: 63 AIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRIEVSNLDGSLRKVL 121
Query: 341 -SSNLTNVVGVEFDYADDKILFTQIRPWAKI 370
L + D + + +T KI
Sbjct: 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 154 bits (389), Expect = 1e-41
Identities = 69/288 (23%), Positives = 129/288 (44%), Gaps = 21/288 (7%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P +YW ++G P+I ++ +DGS+ T++V N + LTID +YW D +LI
Sbjct: 132 PAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN-VGRANGLTIDYAKRRLYWTDLDTNLI 190
Query: 102 QKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTG 161
+ + G NR++I +LP+P G+ ++ +YW D + R++ +A+K + N T+ I+
Sbjct: 191 ESSNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTI---IQGH 247
Query: 162 LSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSA 221
L + DI +F Q NG C LC + PV + C C
Sbjct: 248 LDYVMDILVFHSSRQSGWNECAS---SNGHCSHLCLAVPVG------GFVCGCPAHYSLN 298
Query: 222 SDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQ 281
+D + C+ +L+FS ++ I + +D + + +L NV +++D D ++ +
Sbjct: 299 ADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWID 358
Query: 282 IRPWA-KIAWIPTTNPSS-------ASSNLTNVVGVEFDYADDKILFT 321
R + A + + + + + D I +T
Sbjct: 359 SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT 406
Score = 125 bits (314), Expect = 2e-31
Identities = 43/194 (22%), Positives = 84/194 (43%), Gaps = 12/194 (6%)
Query: 42 PLPRLLYWIDYG-QYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
P +Y+ + + P+I ++ LDG++ + +G+S P L +D + ++W D+ L
Sbjct: 441 PEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRR 500
Query: 101 IQKISYNGGNRQIIRR-NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIR 159
I+ +G NR ++ N+ P+G+ V ++ +YW+D+ + + K T ++
Sbjct: 501 IESSDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGR---TKVQ 557
Query: 160 TGLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTP 219
++ L DI +N +PC NGGC +C + +C C
Sbjct: 558 ARIAQLSDIHAVKELNLQEYRQHPCA-QDNGGCSHIC------LVKGDGTTRCSCPMHLV 610
Query: 220 SASDPKKCTTMDEY 233
D C +
Sbjct: 611 LLQDELSCGGTKHH 624
Score = 49.0 bits (116), Expect = 2e-06
Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 231 DEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWAKI-- 288
+ +L+FS R +IR + L+ V ++ + ++FD D++I +T I I
Sbjct: 6 EAFLLFSRRADIRRISLETNNNNVAI-PLTGVKEASALDFDVTDNRIYWTDISLK-TISR 63
Query: 289 AWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA---SSNL 344
A++ + L G+ D+ + + +I +L
Sbjct: 64 AFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTN-RIEVSKLDGQHRQVLVWKDL 122
Query: 345 TNVVGVEFDYADDKILFTQIRPWAKI 370
+ + D A+ + +T+ KI
Sbjct: 123 DSPRALALDPAEGFMYWTEWGGKPKI 148
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 147 bits (371), Expect = 2e-40
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G PRI S +DGS I + P LTID +YWVDAK +I
Sbjct: 211 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270
Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
++ + +G +R+ +I + LP+P I V + +YW D + +++ A+K N IR
Sbjct: 271 ERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ---EIIRN 327
Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
L DI QP +N NGGC LC +Y C C TG
Sbjct: 328 KLHFPMDIHTLHPQRQPAGKNR--CGDNNGGCTHLCLPSG-------QNYTCACPTGF-R 377
Query: 221 ASDPKKCT 228
+ C
Sbjct: 378 KINSHACA 385
Score = 79.8 bits (196), Expect = 1e-16
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
F L++W D RI ++ L+GS +VS G+ P L +D +YW D+
Sbjct: 123 FHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS 181
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKAS-------KLA 148
I+ + +G +R+ ++ ++L P IA+H + +YW D + +S +A
Sbjct: 182 RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA 241
Query: 149 STNITLPTPI 158
T++ P +
Sbjct: 242 DTHLFWPNGL 251
Score = 41.3 bits (96), Expect = 4e-04
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
C NGGC Q C +C C TG D + C ++E
Sbjct: 4 ENC-NVNNGGCAQKCQMIRG-------AVQCTCHTGYRLTEDGRTCQDVNEC 47
Score = 35.5 bits (81), Expect = 0.029
Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%)
Query: 189 NGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLD 248
G C Q C + ++C C G D + C + V I +
Sbjct: 50 EGYCSQGCTNSEG-------AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVL 102
Query: 249 PTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA--KIAWIPTTNPSSASSNLTNV 306
P + ++NL N + ++F + + + ++ + + + S+ L +
Sbjct: 103 PHRSE-YTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161
Query: 307 VGVEFDYADDKILFT 321
G+ D+ DK+ +T
Sbjct: 162 GGLAVDWVHDKLYWT 176
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 143 bits (362), Expect = 8e-40
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 10/194 (5%)
Query: 41 SPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
P+ +YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL
Sbjct: 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 187
Query: 101 IQKISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTP 157
I I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L
Sbjct: 188 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL--- 244
Query: 158 IRTGLSGLRDIAIFDIVNQPPDENNPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
+ L D+ +F + QP N C NGGC+ LC P P + + C C
Sbjct: 245 LAENLLSPEDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSP-KFTCACP 302
Query: 216 TGTPSASDPKKCTT 229
G A D + C T
Sbjct: 303 DGMLLARDMRSCLT 316
Score = 79.7 bits (196), Expect = 8e-17
Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 15/175 (8%)
Query: 7 LASLIWAIRLALRLLKKKKKLKTSFRSANTTSP----FSPLPRLLYWIDYGQYPRIGKSY 62
+A L + R +R + + TS N + +YW D Q I +
Sbjct: 1 IAYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQ-RMICSTQ 58
Query: 63 LDGSKWTS----IVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ-IIRRN 117
LD + S ++S I P L +D ++YW D+ L + G R+ + R N
Sbjct: 59 LDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN 118
Query: 118 LPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
P I V +YW D K L +I + + + I +
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVTENIQWPNGITL 171
Score = 49.7 bits (118), Expect = 7e-07
Identities = 28/147 (19%), Positives = 54/147 (36%), Gaps = 13/147 (8%)
Query: 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIAWI 291
YL F+ R E+R + LD + + NL NVV ++ + A ++I ++ + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 292 PTTNPSS-----ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSA---SSN 343
+ S S ++ G+ D+ I +T ++ T N
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRKTLFREN 118
Query: 344 LTNVVGVEFDYADDKILFTQIRPWAKI 370
+ + D + +T AKI
Sbjct: 119 GSKPRAIVVDPVHGFMYWTDWGTPAKI 145
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 138 bits (349), Expect = 6e-38
Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 11/193 (5%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P +YW D+G+ P+I ++ +DGS I+++ I P LT+D + +YW DAKL+ I
Sbjct: 131 PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI 190
Query: 102 QKISYNGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
K + +G NRQ ++ +LP+P + + + +YW D + ++ +K + I +
Sbjct: 191 HKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE---IHS 247
Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
+ DI F QP N NGGC LC P K Y+C C TG
Sbjct: 248 DIFSPMDIHAFSQQRQPNATNPCG--IDNGGCSHLCLMSP-----VKPFYQCACPTGVKL 300
Query: 221 ASDPKKCTTMDEY 233
+ K C + +
Sbjct: 301 LENGKTCKDGNSH 313
Score = 74.7 bits (183), Expect = 3e-15
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 9/136 (6%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGS-KWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
F L+YW D + I ++ + + ++V +G+ P L D +YW D++
Sbjct: 42 FVFSHGLIYWSDVSE-EAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSET 100
Query: 99 DLIQKISYNGGNRQI-IRRNLPNPMGIAVHKSD--VYWVDRNLR-TVYKASKLASTNITL 154
+ I+ + +G R++ + L P IA+ S +YW D + +A S+ +
Sbjct: 101 NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160
Query: 155 PTPIRTGLSGLRDIAI 170
I + + + +
Sbjct: 161 ---INSEIYWPNGLTL 173
Score = 69.7 bits (170), Expect = 2e-13
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 12/134 (8%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYL-DGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
P LLY + +G + +IV G+ + +YW D +
Sbjct: 3 SAPLLLYANRRD----LRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 58
Query: 101 IQKISYNGGNRQ--IIRRNLPNPMGIAV-HKSD-VYWVDRNLRTVYKASKLASTNITLPT 156
I++ +N ++ L +P G+A + +YW D + ++ S L
Sbjct: 59 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVL-- 116
Query: 157 PIRTGLSGLRDIAI 170
L R IA+
Sbjct: 117 -FWQELDQPRAIAL 129
Score = 49.3 bits (117), Expect = 9e-07
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 8/149 (5%)
Query: 231 DEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIA 289
L+++ R ++R + V L + V+F ++ I ++ + A K
Sbjct: 4 APLLLYANRRDLRLVDATNGKENATI-VVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 290 WIPTTNPSS--ASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSS---ASSNL 344
T S L + G+ D+ +K+ +T +I L
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTD-SETNRIEVSNLDGSLRKVLFWQEL 121
Query: 345 TNVVGVEFDYADDKILFTQIRPWAKIAWI 373
+ D + + +T KI
Sbjct: 122 DQPRAIALDPSSGFMYWTDWGEVPKIERA 150
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 133 bits (336), Expect = 6e-36
Identities = 59/188 (31%), Positives = 85/188 (45%), Gaps = 14/188 (7%)
Query: 42 PLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLI 101
P+ +YW D+G PRI S +DGS I + P LTID +YWVDAK +I
Sbjct: 168 PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 227
Query: 102 QKISYNGGNRQ-IIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
++ + +G +R+ +I + LP+P I V + +YW D + +++ A+K N + IR
Sbjct: 228 ERANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEI---IRN 284
Query: 161 GLSGLRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPS 220
L DI QP +N NGGC LC Y C C TG
Sbjct: 285 KLHFPMDIHTLHPQRQPAGKNRCGDN--NGGCTHLCLPSGQN-------YTCACPTGFRK 335
Query: 221 ASDPKKCT 228
+ C
Sbjct: 336 INS-HACA 342
Score = 80.3 bits (197), Expect = 8e-17
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 39 PFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
F L++W D RI ++ L+GS +VS G+ P L +D +YW D+
Sbjct: 79 DFHHRRELVFWSDVTL-DRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGT 137
Query: 99 DLIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLRTVYKASKLASTNITLP 155
I+ + +G +R+ ++ ++L P IA+H + +YW D +AS + +
Sbjct: 138 SRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-- 195
Query: 156 TPIRTGLSGLRDIAI 170
T L + I
Sbjct: 196 IIADTHLFWPNGLTI 210
Score = 65.3 bits (158), Expect = 6e-12
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 48 YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
+ + I + S++T ++ N + L + V+W D LD I + + N
Sbjct: 45 PVLLFANRIDIRQVLPHRSEYT-LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103
Query: 108 GGNRQ-IIRRNLPNPMGIAV--HKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
G N + ++ L +P G+AV +YW D + A+ + L + L
Sbjct: 104 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL---LWQSLEK 160
Query: 165 LRDIAI 170
R IA+
Sbjct: 161 PRAIAL 166
Score = 57.6 bits (138), Expect = 2e-09
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 16/144 (11%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC--TTMDEYLVFSTR 239
N C G C Q C + ++C C G D + C + L+F+ R
Sbjct: 2 NEC--AEEGYCSQGCTNSEG-------AFQCWCEAGYELRPDRRSCKALGPEPVLLFANR 52
Query: 240 TEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQI-RPWAKIAWIPTTNPSS 298
+IR + + + ++NL N + ++F + + + ++ + A + +N
Sbjct: 53 IDIRQVLPHRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 109
Query: 299 -ASSNLTNVVGVEFDYADDKILFT 321
S+ L + G+ D+ DK+ +T
Sbjct: 110 VVSTGLESPGGLAVDWVHDKLYWT 133
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 117 bits (294), Expect = 1e-30
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 42 PLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDL 100
P+ LYW D+ + P+I S++DG+ + + + +P LT D + + WVDA
Sbjct: 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190
Query: 101 IQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
+ ++ R+ + L P + + ++Y+ D +V S + P
Sbjct: 191 AECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHP--H 248
Query: 161 GLSGLRDIAIFD 172
+ L I I
Sbjct: 249 KQTRLYGITIAL 260
Score = 84.5 bits (209), Expect = 9e-19
Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 10/142 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
F + +++YW D + P IG++ L G + T+I+ + P + +D ++W D++LD
Sbjct: 43 FDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD 101
Query: 100 LIQKISYNGGNRQ-IIRRNLPNPMGIAVHKSD--VYWVDRNLRT--VYKASKLASTNITL 154
I+ +G R+ + L NP GI +YW D N + + + L
Sbjct: 102 RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL 161
Query: 155 PTPIRTGLSGLRDIAIFDIVNQ 176
+ L + D +
Sbjct: 162 ---AQDNLGLPNGLTF-DAFSS 179
Score = 68.7 bits (168), Expect = 2e-13
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 11/122 (9%)
Query: 57 RIGKSYLDGSKWT-----SIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNR 111
+I + L+ + + + + L D VYW D I + S +GG
Sbjct: 11 KIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70
Query: 112 Q-IIRRNLPNPMGIAV-HKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDI 168
IIR++L +P GIA+ H ++W D L + A + L TGL R I
Sbjct: 71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL---FDTGLVNPRGI 127
Query: 169 AI 170
Sbjct: 128 VT 129
Score = 46.8 bits (111), Expect = 4e-06
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 233 YLVFSTRTEIRALHLD-PTLTAVPFKTV--SNLTNVVGVEFDYADDKILFTQIRPWA-KI 288
+L+F+ +I L L+ T+ K ++G+ FD D + +T I +
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 289 AWIPTTNPSS-ASSNLTNVVGVEFDYADDKILFT 321
A + P++ +L + G+ D+ I +T
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWT 96
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 71.7 bits (175), Expect = 3e-14
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 6/125 (4%)
Query: 33 SANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY 92
N P +Y++D + I ++ + I + Y
Sbjct: 184 DCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEANIEHY----NVYGSLIFY 239
Query: 93 WVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNI 152
+ + +G + + + I V VY+ D Y S I
Sbjct: 240 QRGGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQYVYFTDFVSNKEYCTSTQNPDTI 297
Query: 153 TLPTP 157
P
Sbjct: 298 KALQP 302
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 49.8 bits (119), Expect = 2e-08
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
D+ C NGGCEQ C + C C G +D CT EY
Sbjct: 3 DDQLIC-VNENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 50
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 49.0 bits (117), Expect = 3e-08
Identities = 15/50 (30%), Positives = 17/50 (34%), Gaps = 7/50 (14%)
Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
C NG CEQ C NK C C G A + K C +
Sbjct: 2 C-NIKNGRCEQFC----KNSADNK--VVCSCTEGYRLAENQKSCEPAVPF 44
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 48.5 bits (116), Expect = 4e-08
Identities = 14/50 (28%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
C NG C+Q C C CA G A + K C Y
Sbjct: 4 C-SLDNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTGPY 45
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 47.8 bits (114), Expect = 7e-08
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 7/50 (14%)
Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
C NGGCEQ C + C C G +D CT EY
Sbjct: 2 C-VNENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 44
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 47.0 bits (112), Expect = 1e-07
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 184 CFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
C NGGC+Q C +C CA G D K C + + +
Sbjct: 1 C-SLDNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTERF 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 2e-06
Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 77/208 (37%)
Query: 2 GSTLALASLIWAIRLALRLLKK------------KKKLKTSFRSANTTSPF-SPLPRLLY 48
G +L L L LR K ++KLK S R SPF S
Sbjct: 381 GPPQSLYGL----NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH------ 430
Query: 49 WIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKI---- 104
L + + +++ D+ ++V + +AK D+ +I
Sbjct: 431 -------------LLVPA--SDLINK----------DLVKNNVSF-NAK-DI--QIPVYD 461
Query: 105 SYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNI------------ 152
+++G + +++ ++ + + + V W ++ +T+I
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLPVKWE--------TTTQFKATHILDFGPGGASGLG 513
Query: 153 TLPTPIRTGLSGLRDIAIFDIVNQPPDE 180
L + G +G+R I + P D+
Sbjct: 514 VLTHRNKDG-TGVRVIVAGTLDINPDDD 540
Score = 35.0 bits (80), Expect = 0.046
Identities = 56/421 (13%), Positives = 103/421 (24%), Gaps = 154/421 (36%)
Query: 96 AKLDLIQKISYNGGNRQIIRRN--------LPNPMGIAVHKSDVYWVDRNLRTVYKASKL 147
+ D + + + N L + K+ ++ A +
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL-----IKNYITARIM 132
Query: 148 ASTNITLPTP------IRTGLSGLRDIAIF-------------------------DIVN- 175
A + + G + L +AIF D++
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF 190
Query: 176 ---------QPPDENNPCFRTG------------NGGCEQLCFSYPVEFPQNKL----HY 210
+ + F G + L S P+ P + HY
Sbjct: 191 SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL-SIPISCPLIGVIQLAHY 249
Query: 211 KCDC-ATG-TPSASDPKKCTTMDEYLVFSTRTEIRAL--HLDPTLTAVPFKTVSNLTNVV 266
G TP R+ ++ H +TAV +
Sbjct: 250 VVTAKLLGFTPGE----------------LRSYLKGATGHSQGLVTAVAIAETDS----- 288
Query: 267 GVEFDYADDK---ILFTQIRPWAKIAWI--------PTTN--PSSASSNLTN-------- 305
F + K +LF +I P T+ PS +L N
Sbjct: 289 WESFFVSVRKAITVLF----------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 306 --VVGVEFDYADDKI-LFTQIRPWAKIAWIPTTN----------PSSASSNLTNVVGVEF 352
+ + + D + P K I N P S + +
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 353 DYADD--KILFTQIRPWAKIAW--IPTTNP--SS---ASVNTILSRGKDEKAKIENEQDL 403
D +I F++ + K + +P +P S + + I N +D+
Sbjct: 399 PSGLDQSRIPFSERKL--KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF-NAKDI 455
Query: 404 G 404
Sbjct: 456 Q 456
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 46.5 bits (111), Expect = 6e-06
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 5/121 (4%)
Query: 51 DYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN 110
G Y R+ K + T + NG+ P+ L +D VY D ++ + +
Sbjct: 41 SEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTLAAGSNNQ 99
Query: 111 RQIIRRNLPNPMGIAVHKS-DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIA 169
+ L P G+AV VY DR V KLA+ + T TGL+ +A
Sbjct: 100 TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVV---KLAAGSKTQTVLPFTGLNDPDGVA 156
Query: 170 I 170
+
Sbjct: 157 V 157
Score = 44.9 bits (107), Expect = 2e-05
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+Y D G R+ K T + G++ P + +D + +VY D + + K+
Sbjct: 121 VYVADRGNN-RVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYVTDTDNNRVVKLEA 178
Query: 107 NGGNRQIIRR-NLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
N+ ++ ++ P GIAV ++ VY + N V KL + + T TGL+
Sbjct: 179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV---KLLAGSTTSTVLPFTGLNT 235
Query: 165 LRDIAI 170
+A+
Sbjct: 236 PLAVAV 241
Score = 28.4 bits (64), Expect = 4.6
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 57 RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG 108
++ K + T + G++ P + +D VY D D + K++
Sbjct: 214 QVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLE 264
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 8e-05
Identities = 37/309 (11%), Positives = 77/309 (24%), Gaps = 105/309 (33%)
Query: 10 LIWAIRLALRLLKKKKKL---------KTSFRSANTTSPFSPLPRL---LYWIDYGQYPR 57
+R AL L+ K + KT + + + ++ ++W++
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 58 IGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRN 117
P + +Q L+ +I N +R N
Sbjct: 195 ---------------------PETVLEMLQK-----------LLYQIDPNWTSRSDHSSN 222
Query: 118 LPNPMGIAVHKSDVYWVDRN-------LRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
+ + + + L V A + N++ + T R +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT-----RFKQV 277
Query: 171 FDIVNQ------PPDENNPCFRTGNG--------GC------EQLCFSYPV--------- 201
D ++ D ++ C ++ + P
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 202 -EFP---QNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLD----PTLTA 253
+ N H CD K T ++ L E R + P
Sbjct: 338 RDGLATWDNWKHVNCD-----------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 254 VPFKTVSNL 262
+P +S +
Sbjct: 387 IPTILLSLI 395
Score = 42.5 bits (99), Expect = 2e-04
Identities = 39/292 (13%), Positives = 82/292 (28%), Gaps = 91/292 (31%)
Query: 16 LALRLLKKKKKLKTSFRSANTTSPF--SPLPRLL--------YWIDYGQYPRIGKSYLDG 65
L L + + L R TT+P S + + W +++
Sbjct: 307 LLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNW-----------KHVNC 352
Query: 66 SKWTSIVSNGIS----------------MPRDLTIDMQTHDVYWVDAKLDLIQKISYNGG 109
K T+I+ + ++ P I + W D + +
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 110 NRQIIRRNLPNPMGIAVH---------KSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
++ + P I++ + Y + R++ Y K ++ +P +
Sbjct: 413 KYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-- 469
Query: 161 GLSGLRDIAIFD-----IVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCA 215
D + + N E FR + + F + K+ +
Sbjct: 470 ------DQYFYSHIGHHLKNIEHPERMTLFR-------MVFLDF--RFLEQKIRHDSTAW 514
Query: 216 TGTPSA----------------SDPKKCTTMDEYLVFSTRTE---IRALHLD 248
+ S +DPK ++ L F + E I + + D
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD 566
Score = 35.6 bits (81), Expect = 0.033
Identities = 60/377 (15%), Positives = 104/377 (27%), Gaps = 142/377 (37%)
Query: 131 VYWVDRNLRTVYKASKLASTNITLPTP---IRTGLSGLRD---IAIFDIVNQPPDENNPC 184
+ DR +K N++ P +R L LR + I
Sbjct: 113 IEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLID------------- 156
Query: 185 FRTGNGGC------EQLCFSYPVE--FP--------------------QNKLHYKCD--- 213
G G +C SY V+ KL Y+ D
Sbjct: 157 ---GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 214 CATGTPSAS--------------------------------DPK-------KC----TTM 230
+ S++ + K C TT
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 231 D----EYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP-- 284
++L +T T I H TLT P + S L + D P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQ--DLPREVLTTNPRR 329
Query: 285 ----WAKIAWIPTTN---PSSASSNLTNVVGVEFDY---ADDKILFTQ--IRPWAKIAWI 332
I T LT ++ + A+ + +F + + P A I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAHI 387
Query: 333 PTTNPSSASSNLTNVVGV---EFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSR 389
P T ++ + + +D ++ ++ ++ + P +++ +I S
Sbjct: 388 P-----------TILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQPKESTI-SIPSI 431
Query: 390 GKDEKAKIENEQDLGRK 406
+ K K+ENE L R
Sbjct: 432 YLELKVKLENEYALHRS 448
Score = 28.3 bits (62), Expect = 5.6
Identities = 50/363 (13%), Positives = 93/363 (25%), Gaps = 117/363 (32%)
Query: 89 HDVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLA 148
H + +D + Q Y + I+ V D V +++ ++
Sbjct: 2 HHHHHMDFETGEHQ---Y--QYKDILSVFEDA----FVDNFDCKDVQDMPKSILSKEEID 52
Query: 149 STNITLPTPIRTGLSGLRDIAIFDIVNQPPDENNP-----CFRT-GNGGCEQ-----LCF 197
I+ + + ++ L
Sbjct: 53 -----------------------HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 198 SYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEYL----VFS----TR----TEIR-- 243
+Y F + + + PS D VF+ +R ++R
Sbjct: 90 NYK--FLMSPIKTEQR----QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143
Query: 244 ALHLDPTLTAVPF------KTVSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPS 297
L L P + KT + V K+ Q + KI W+ N +
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTW--VALDV-----CLSYKV---QCKMDFKIFWLNLKNCN 193
Query: 298 SASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADD 357
S + L + + L QI P T+ S SSN+ +
Sbjct: 194 SPETVLEML----------QKLLYQIDP-------NWTSRSDHSSNIKLRIH-SIQAELR 235
Query: 358 KILFTQIRP---------WAKIAW---------IPTTNPSSASVNTILSRGKDEKAKIEN 399
++L ++ AW + TT V LS +++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--FKQVTDFLSAATTTHISLDH 293
Query: 400 EQD 402
Sbjct: 294 HSM 296
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 9/51 (17%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE 232
N C NGGC +C + Y+C C G + ++C +DE
Sbjct: 30 NEC-LDNNGGCSYVCNDLKIG-------YECLCPDGFQLVAQ-RRCEDIDE 71
Score = 31.1 bits (71), Expect = 0.16
Identities = 14/49 (28%), Positives = 15/49 (30%), Gaps = 12/49 (24%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
DE C C QLC + YKC C G K C
Sbjct: 70 DE---C--QDPDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKAC 106
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 41.1 bits (97), Expect = 4e-04
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%)
Query: 57 RIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQI-IR 115
RIGK DG+ + + N S P +T+ +++ + + + I +I+ G + +
Sbjct: 126 RIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITNTGKLEEYPLP 184
Query: 116 RNLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
N P+GI +++V+ + ++ +T I T + I
Sbjct: 185 TNAAAPVGITSGNDGALWFVEIMGNKIG---RITTTGEISEYDIPTPNARPHAITA 237
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/126 (15%), Positives = 40/126 (31%), Gaps = 7/126 (5%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+++ + +I G V + L + D+++ + + I K+S
Sbjct: 33 VWFTQHKA-NKISSLDQSGRIKEFEVPTPDAKVMCLIVS-SLGDIWFTENGANKIGKLSK 90
Query: 107 NGGNRQI-IRRNLPNPMGIAVHKSDVYWV-DRNLRTVYKASKLASTNITLPTPIRTGLSG 164
GG + + + P GI + W N + KL + + S
Sbjct: 91 KGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRI---GKLTADGTIYEYDLPNKGSY 147
Query: 165 LRDIAI 170
I +
Sbjct: 148 PAFITL 153
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 40.8 bits (96), Expect = 5e-04
Identities = 21/126 (16%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
+++ + RIG+ DG + N S P +T+ + +++ + + + I +I+
Sbjct: 112 IWFTEMNGN-RIGRITDDGKIREYELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITE 169
Query: 107 NGGNRQI-IRRNLPNPMGIAVHKSD-VYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
+G + I P+GI D +++V+ + ++ ++ I T +
Sbjct: 170 SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKI---GRITTSGEITEFKIPTPNAR 226
Query: 165 LRDIAI 170
I
Sbjct: 227 PHAITA 232
Score = 36.5 bits (85), Expect = 0.011
Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 72 VSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQI-IRRNLPNPMGIAVHKS- 129
++N + P +T+ V+ K ++I I+ +G + + M + +
Sbjct: 10 LTNQDTGPYGITVS-DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDG 68
Query: 130 DVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAI 170
+V++ + + ++ I + S I
Sbjct: 69 EVWFTENAANKI---GRITKKGIIKEYTLPNPDSAPYGITE 106
Score = 35.0 bits (81), Expect = 0.034
Identities = 12/92 (13%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISY 106
L++++ +IG+ G + + P +T +++ + + I +++
Sbjct: 196 LWFVEIIGN-KIGRITTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS 253
Query: 107 NGGNRQI-IRRNLPNPMGIAVHKSDVYWVDRN 137
N + I+ P GI +++
Sbjct: 254 NNIIEEYPIQIKSAEPHGICFDGETIWFAMEC 285
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 40.6 bits (96), Expect = 5e-04
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 46 LLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKIS 105
+ + +I G + + PR +T+D + + V+ K+ +
Sbjct: 90 DIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFD 148
Query: 106 YNGGNRQIIRR-----NLPNPMGIAV-HKSDVYWVDRNLRTVYK 143
NG ++ + +L P G+ V K +++ D V
Sbjct: 149 QNG---NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189
Score = 33.3 bits (77), Expect = 0.11
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 3/68 (4%)
Query: 79 PRDLTIDMQTHDVYWVDAKL-DLIQKISYNGGN-RQIIRRNLPNPMGIAVHKSD-VYWVD 135
P + + + D+ + IQ + G R+ L +P G+ V + V+
Sbjct: 79 PNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVE 138
Query: 136 RNLRTVYK 143
+ V
Sbjct: 139 CKVMRVII 146
Score = 31.0 bits (71), Expect = 0.67
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 64 DGSKWTSIVSNGI-SMPRDLTIDMQTHDVYWVDAKLDL-IQKISYNGGNRQIIRR----- 116
+G I GI + P + I+ + D + + + +G Q+I
Sbjct: 193 EGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDG---QLISALESKV 248
Query: 117 NLPNPMGIAVHKSD-VYWVDRNLR-TVYKASKLA 148
+A+ V ++ R +Y+ +LA
Sbjct: 249 KHAQCFDVALMDDGSVVLASKDYRLYIYRYVQLA 282
Score = 28.7 bits (65), Expect = 3.6
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 77 SMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG------GNRQIIRRNLPNPMGIAVHKSD 130
+ P + ++ Q +D+ D IQ G G L P +AV ++
Sbjct: 30 TEPSGVAVNAQ-NDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNS 88
Query: 131 VYWV 134
+
Sbjct: 89 GDII 92
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 37.7 bits (88), Expect = 0.002
Identities = 13/48 (27%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
NGGCEQ C + K C C G +D C
Sbjct: 89 LICVNE---NGGCEQYC----SDHTGTK--RSCRCHEGYSLLADGVSC 127
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 35.8 bits (83), Expect = 0.005
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 14/54 (25%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLH--YKCDCATG-TPSASDPKKCTTMDE 232
+PCF CE C Q Y C CA G P +P +C
Sbjct: 5 DPCF---RANCEYQC--------QPLDQTSYLCVCAEGFAPIPHEPHRCQMFCN 47
Score = 34.3 bits (79), Expect = 0.018
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 18/57 (31%)
Query: 172 DIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG-TPSASDPKKC 227
DI DE C G C +C + P ++C C + C
Sbjct: 79 DI-----DE---C--ENGGFCSGVCHNLPGT-------FECICGPDSALAGQIGTDC 118
Score = 31.6 bits (72), Expect = 0.13
Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 10/56 (17%)
Query: 178 PDENNPCF-RTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE 232
P E + C C C C+C G D CT +DE
Sbjct: 36 PHEPHRCQMFCNQTACPADC--------DPNTQASCECPEGY-ILDDGFICTDIDE 82
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 36.6 bits (85), Expect = 0.009
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 7/53 (13%)
Query: 181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
N C GC+ C + Y C CA G D K+C D+
Sbjct: 2 KNECHPERTDGCQHFCLP-------GQESYTCSCAQGYRLGEDHKQCVPHDQC 47
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 36.6 bits (84), Expect = 0.014
Identities = 15/142 (10%), Positives = 33/142 (23%), Gaps = 6/142 (4%)
Query: 29 TSFRSANTTSPFSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGIS--MPRDLTIDM 86
+ T ++ D R L +++
Sbjct: 176 SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHP 235
Query: 87 QTHDVYWVDAKLDLIQKISYNGGNRQII--RRNLPNPMGIAVHKSD--VYWVDRNLRTVY 142
++Y+ + + + + ++ I H S Y V N +
Sbjct: 236 INGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL 295
Query: 143 KASKLASTNITLPTPIRTGLSG 164
++ T I G G
Sbjct: 296 RSDYDWKTKRLTTPYIVCGQQG 317
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 32.6 bits (75), Expect = 0.031
Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 179 DENNPCFRTGNGGC-EQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDE 232
DE C C +C + P ++C+C G K C +DE
Sbjct: 4 DE---C-SLKPSICGTAVCKNIPG-------DFECECPEGYRYNLKSKSCEDIDE 47
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 35.1 bits (81), Expect = 0.032
Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
N C GC+ C Y C CA G D K+C D+
Sbjct: 42 AKNECHPERTDGCQHFCLPGQES-------YTCSCAQGYRLGEDHKQCVPHDQC 88
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 33.5 bits (77), Expect = 0.047
Identities = 9/55 (16%), Positives = 10/55 (18%), Gaps = 13/55 (23%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKL-HYKCDCATGTPSASDPKKCTTMDE 232
+E C C N Y CDC C
Sbjct: 4 NE---C-LDPTTCISGNC--------VNTPGSYICDCPPDFELNPTRVGCVDTRS 46
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 32.4 bits (74), Expect = 0.079
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLH-YKCDCATGTPSASDPKKCTTMDEY 233
N C NGGC C ++ +C CA G D +C ++
Sbjct: 53 SFLN-C-SLDNGGCTHYC--------LEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 30.7 bits (69), Expect = 0.089
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 9/41 (21%)
Query: 177 PPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG 217
+ C N CF+ + + Y C+CA G
Sbjct: 9 ETFDAWYCL---NDA---HCFAVKIA---DLPVYSCECAIG 40
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 33.4 bits (76), Expect = 0.11
Identities = 16/129 (12%), Positives = 32/129 (24%), Gaps = 13/129 (10%)
Query: 53 GQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQ 112
P + DG+ T + +T T D+ I I +
Sbjct: 93 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGS 151
Query: 113 IIRR-----------NLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRTG 161
I P G+ + +Y + + + ++ P
Sbjct: 152 IWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VE 210
Query: 162 LSGLRDIAI 170
+ + D A
Sbjct: 211 QTNIDDFAF 219
Score = 27.6 bits (61), Expect = 7.9
Identities = 26/199 (13%), Positives = 54/199 (27%), Gaps = 18/199 (9%)
Query: 90 DVYWVDAKLDLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWV-DRNLRTVYKASKLA 148
++ + ++ I I+ +G +QI G+A + N ++ S +
Sbjct: 44 TIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVK 102
Query: 149 STNITLPTPIRTGLSGLRDIAIFDIVNQPPDEN-----NPCFRTGNGGCEQLCFSYPVEF 203
S L I D + Q S +E
Sbjct: 103 SDGTVETLLTLPDAIFLNGITPL------SDTQYLTADSYRGAIWLIDVVQPSGSIWLEH 156
Query: 204 PQNKLHYKCDCATGTPSASDPKKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLT 263
P + A++ K Y+ + + + + +D T + T
Sbjct: 157 PMLARS----NSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQT 212
Query: 264 NVVGVEFDYADDKILFTQI 282
N+ FD + +
Sbjct: 213 NIDDFAFD-VEGNLYGATH 230
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 29.1 bits (65), Expect = 0.29
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 9/41 (21%)
Query: 177 PPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG 217
+ C N CF+ + + Y C+CA G
Sbjct: 9 ETFDAWYCL---NDA---HCFAVKIA---DLPVYSCECAIG 40
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 32.0 bits (72), Expect = 0.29
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 37 TSPFSPLPRLLYWIDYGQYPRIGK--SYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWV 94
T + + G+ Y +K T+++ + +P + + V
Sbjct: 143 TDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVA 202
Query: 95 DAKLDLIQKI---SYNGGNRQIIRRNLPNPMGIAVHKSDVYWV 134
+ I K G +++ +PNP I + +WV
Sbjct: 203 EFLSHQIVKYWLEGPKKGTAEVLV-KIPNPGNIKRNADGHFWV 244
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 30.5 bits (69), Expect = 0.42
Identities = 11/38 (28%), Positives = 12/38 (31%), Gaps = 6/38 (15%)
Query: 180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG 217
NPC NGG C + Y C C G
Sbjct: 56 TPNPCH---NGG---TCEISEAYRGDTFIGYVCKCPRG 87
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 28.7 bits (65), Expect = 0.70
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 13/40 (32%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKL-HYKCDCATG 217
DE C GN C +N + ++C C G
Sbjct: 45 DE---C-SVGNPCGNGTC--------KNVIGGFECTCEEG 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.1
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 10/29 (34%)
Query: 22 KKK--KKLKTSFRSANTTSPFSP--LPRL 46
+K+ KKL+ S + ++ P L
Sbjct: 18 EKQALKKLQASLK------LYADDSAPAL 40
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 28.2 bits (63), Expect = 2.8
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 178 PDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
+ N C + C C ++ Y C C D K C
Sbjct: 114 ATDINECTDFVDVPCSHFCNNFIG-------GYFCSCPPEYFLHDDMKNCG 157
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 27.8 bits (61), Expect = 3.8
Identities = 11/50 (22%), Positives = 14/50 (28%), Gaps = 3/50 (6%)
Query: 180 ENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKC-DCATGTPSASDPKKCT 228
C T + C C + K C C G S D + C
Sbjct: 71 RKQLCTATQDTVCR--CRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACK 118
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 28.8 bits (64), Expect = 3.9
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 6/134 (4%)
Query: 58 IGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGNRQIIRRN 117
G + DG+ + S + + V ++ IS + +
Sbjct: 112 SGSASKDGNDDGDLASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPG 170
Query: 118 LP-NPMGIAVHKSDVYWV-DRNLRTVYKASKLASTNITLPTPIRTGLSGLRDIAIFDIVN 175
+ K VY + TVY K + T + + SG D
Sbjct: 171 FKGGKPAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETE 230
Query: 176 QPP---DENNPCFR 186
+ D N R
Sbjct: 231 EWLYFVDSNKNFGR 244
Score = 28.4 bits (63), Expect = 4.2
Identities = 13/74 (17%), Positives = 22/74 (29%), Gaps = 16/74 (21%)
Query: 79 PRDLTIDMQTHDVYWVDAKLDLIQKISYNG--------------GNRQIIRRNLPNPMGI 124
P + + Y D L + KI+ +G + P G+
Sbjct: 270 PYLIYYF-VDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGM 328
Query: 125 AVHKS-DVYWVDRN 137
V + + Y VD
Sbjct: 329 TVDEDGNFYIVDGF 342
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 27.7 bits (62), Expect = 4.8
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 12/37 (32%)
Query: 181 NNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG 217
+ PC NGG C + Y+C C G
Sbjct: 137 HQPCL---NGGT---CSN------TGPDKYQCSCPEG 161
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 27.8 bits (62), Expect = 4.9
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 10/40 (25%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLH-YKCDCATG 217
C NG C+Q C + + C CA G
Sbjct: 79 FTRKLC-SLDNGDCDQFC--------HEEQNSVVCSCARG 109
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 27.9 bits (63), Expect = 5.8
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 267 GVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQI 323
G++ ++ I + W K W NP S L+ + + + I
Sbjct: 172 GIDGIATEN-ITTAR---WQKCVWNAAFNPLSV---LSGGLDTLDILSTQEGFVRAI 221
Score = 27.9 bits (63), Expect = 5.8
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 7/57 (12%)
Query: 308 GVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASSNLTNVVGVEFDYADDKILFTQI 364
G++ ++ I + W K W NP S L+ + + + I
Sbjct: 172 GIDGIATEN-ITTAR---WQKCVWNAAFNPLSV---LSGGLDTLDILSTQEGFVRAI 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.413
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,265,329
Number of extensions: 370940
Number of successful extensions: 855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 730
Number of HSP's successfully gapped: 95
Length of query: 407
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 311
Effective length of database: 4,021,377
Effective search space: 1250648247
Effective search space used: 1250648247
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)