RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy950
(407 letters)
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 86.1 bits (212), Expect = 1e-19
Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 44 PRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQK 103
+YW D+G +I K L+G S+V+ I P +T+D+ + +YWVD+KL I
Sbjct: 131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190
Query: 104 ISYNGGNRQIIRRN---LPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPIRT 160
I NGGNR+ I + L +P +AV + V+W D ++ A++L +++ L +
Sbjct: 191 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL---LAE 247
Query: 161 GLSGLRDIAIFDIVNQP 177
L D+ +F + QP
Sbjct: 248 NLLSPEDMVLFHNLTQP 264
Score = 53.8 bits (128), Expect = 8e-09
Identities = 45/267 (16%), Positives = 91/267 (34%), Gaps = 26/267 (9%)
Query: 52 YGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNGGN- 110
+ + K LD S++TS++ + L ++ ++ +YW D +I + +
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 111 ----RQIIRRNLPNPMGIAVH--KSDVYWVDRNLRTVYKASKLASTNITLPTPIRTGLSG 164
+I R++ P G+AV S++YW D L TV A + + T R S
Sbjct: 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD---TKGVKRKTLFRENGSK 121
Query: 165 LRDIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDP 224
R I + D + + G + + D
Sbjct: 122 PRAIVV--------DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL 173
Query: 225 KKCTTMDEYLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRP 284
+ Y V S I ++ ++ + L + + +DK+ +T I
Sbjct: 174 ---LSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 228
Query: 285 WA--KIAWIPTTNPSSASSNLTNVVGV 309
A + ++ + + NL + +
Sbjct: 229 EAIFSANRLTGSDVNLLAENLLSPEDM 255
Score = 49.5 bits (117), Expect = 2e-07
Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 6/137 (4%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTS----IVSNGISMPRDLTIDMQTHDVYWVD 95
+YW D Q I + LD + S ++S I P L +D ++YW D
Sbjct: 37 TEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTD 95
Query: 96 AKLDLIQKISYNGGN-RQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITL 154
+ L + G + + R N P I V + + T K K + +
Sbjct: 96 SVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI 155
Query: 155 PTPIRTGLSGLRDIAIF 171
+ + + I +
Sbjct: 156 YSLVTENIQWPNGITLD 172
Score = 49.1 bits (116), Expect = 3e-07
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 233 YLVFSTRTEIRALHLDPTLTAVPFKTVSNLTNVVGVEFDYADDKILFTQIRPWA-KIAWI 291
YL F+ R E+R + LD + + NL NVV ++ + A ++I ++ + +
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 59
Query: 292 PTTNPSSA-----SSNLTNVVGVEFDYADDKILFT 321
+ S+ S ++ G+ D+ I +T
Sbjct: 60 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWT 94
Score = 33.4 bits (75), Expect = 0.037
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 332 IPTTNPSSASSNLTNVVGVEFDYADDKILFTQIRPWAKIAWIPTTNPSSASVNTILSRG 390
+ + +S NL NVV ++ + A ++I ++ + + +S +T++SR
Sbjct: 17 LDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD 75
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 84.9 bits (209), Expect = 3e-19
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 40 FSPLPRLLYWIDYGQ-YPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKL 98
P+ LYW D+ + P+I S++DG+ + + + +P LT D + + WVDA
Sbjct: 129 TDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188
Query: 99 DLIQKISYNGGNRQIIRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITLPTPI 158
+ ++ R+ + L P + + ++Y+ D +V S + P
Sbjct: 189 HRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPH 248
Query: 159 R 159
+
Sbjct: 249 K 249
Score = 46.8 bits (110), Expect = 2e-06
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 40 FSPLPRLLYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLD 99
L R ++W D RI + +DG++ + G+ PR + D ++YW D D
Sbjct: 86 LDHLGRTIFWTDSQLD-RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRD 144
Query: 100 --LIQKISYNGGNRQI---IRRNLPNPMGIAVHKSDVYWVDRNLRTVYKASKLASTNITL 154
I+ +G NR+I LPN + S + WVD +
Sbjct: 145 NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRK- 203
Query: 155 PTPIRTGLSGLRDIAIFD 172
+ GL + +
Sbjct: 204 ---VLEGLQYPFAVTSYG 218
Score = 43.7 bits (102), Expect = 2e-05
Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 233 YLVFSTRTEIRALHLDP-TLTAVPFKT--VSNLTNVVGVEFDYADDKILFTQIRPWA--K 287
+L+F+ +I L L+ T+ K ++G+ FD D + +T I + +
Sbjct: 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62
Query: 288 IAWIPTTNPSSASSNLTNVVGVEFDYADDKI 318
+ + +L + G+ D+ I
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTI 93
Score = 26.4 bits (57), Expect = 7.0
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 333 PTTNPSSASSNLTNVVGVEFDYADDKILFTQIR 365
T + ++G+ FD D + +T I
Sbjct: 24 KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS 56
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 46.3 bits (110), Expect = 9e-08
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NG CEQ C + C C G A + K C +
Sbjct: 5 IKNGRCEQFCKNSA------DNKVVCSCTEGYRLAENQKSCEPAVPF 45
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 46.0 bits (109), Expect = 1e-07
Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NGGCEQ C + C C G +D CT EY
Sbjct: 4 NENGGCEQYCSDHTGT------KRSCRCHEGYSLLADGVSCTPTVEY 44
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 43.6 bits (103), Expect = 8e-07
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NG C+Q C C CA G A + K C Y
Sbjct: 5 LDNGDCDQFCHEEQN-------SVVCSCARGYTLADNGKACIPTGPY 44
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 43.0 bits (101), Expect = 1e-06
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 182 NPC--FRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTT 229
N C NGGC+ LC P + + + C C G A D + C T
Sbjct: 2 NWCERTTLSNGGCQYLCLPAP-QINPHSPKFTCACPDGMLLARDMRSCLT 50
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 42.5 bits (100), Expect = 2e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 7/47 (14%)
Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NGGC+Q C +C CA G D K C + + +
Sbjct: 3 LDNGGCDQFCREERS-------EVRCSCAHGYVLGDDSKSCVSTERF 42
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 40.2 bits (94), Expect = 1e-05
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 7/47 (14%)
Query: 187 TGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTMDEY 233
NGGC C +C CA G D +C ++
Sbjct: 4 LDNGGCTHYCLEEVG-------WRRCSCAPGYKLGDDLLQCHPAVKF 43
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 39.0 bits (91), Expect = 2e-05
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
N C NGGC +C + Y+C C G ++C
Sbjct: 3 NEC-LDNNGGCSHVCNDLKI-------GYECLCPDGF-QLVAQRRC 39
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 38.7 bits (90), Expect = 3e-05
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 7/47 (14%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
N C + C C ++ Y C C D K C
Sbjct: 1 NECTDFVDVPCSHFCNNFIG-------GYFCSCPPEYFLHDDMKNCG 40
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 35.6 bits (82), Expect = 4e-04
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 10/47 (21%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATG-TPSASDPKKC 227
+PCFR CE C P ++ Y C CA G P +P +C
Sbjct: 5 DPCFRAN---CEYQCQ------PLDQTSYLCVCAEGFAPIPHEPHRC 42
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 35.5 bits (82), Expect = 5e-04
Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 9/46 (19%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
+ C C QLC + YKC C G K C
Sbjct: 2 DEC--QDPDTCSQLCVNLEG-------GYKCQCEEGFQLDPHTKAC 38
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/50 (20%), Positives = 13/50 (26%), Gaps = 7/50 (14%)
Query: 179 DENNPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
+ C+ LC +Y Y C C G D C
Sbjct: 9 SRSKSGEEDPQPQCQHLCHNYVG-------GYFCSCRPGYELQEDRHSCQ 51
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 32.9 bits (75), Expect = 0.003
Identities = 9/47 (19%), Positives = 10/47 (21%), Gaps = 8/47 (17%)
Query: 182 NPCFRTGNGGCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
N C C + P Y CDC C
Sbjct: 4 NEC-LDPTTCISGNCVNTPG-------SYICDCPPDFELNPTRVGCV 42
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 36.0 bits (81), Expect = 0.005
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 48 YWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYN 107
++ ++ K + T + G++ P + +D VY D D + K++
Sbjct: 195 VYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSL 253
Query: 108 G 108
Sbjct: 254 E 254
Score = 34.4 bits (77), Expect = 0.020
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 49 WIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVYWVDAKLDLIQKISYNG 108
++ R+ K + + + I+ P + +D + + K+
Sbjct: 154 YVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT-NQVVKLLAGS 212
Query: 109 GNRQII-RRNLPNPMGIAVHKSD-VYWVDRNLRTVYK 143
++ L P+ +AV VY DR V K
Sbjct: 213 TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK 249
Score = 30.2 bits (66), Expect = 0.40
Identities = 11/46 (23%), Positives = 18/46 (39%)
Query: 47 LYWIDYGQYPRIGKSYLDGSKWTSIVSNGISMPRDLTIDMQTHDVY 92
+Y G Y R+ K + T + NG+ P+ L +D
Sbjct: 27 VYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYV 72
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 32.6 bits (74), Expect = 0.006
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 11/52 (21%)
Query: 182 NPCFRTGNGG---CEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCTTM 230
+ C RT G C+ C +Y Y C C G + C+ +
Sbjct: 2 DEC-RTSLGDSVPCDHYCHNYLG-------GYYCSCRVGYILHQNKHTCSAL 45
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 32.2 bits (73), Expect = 0.008
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 11/50 (22%)
Query: 182 NPCFRTGNG---GCEQLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKCT 228
+ C + G C+ C ++ + C C G + + C+
Sbjct: 2 DEC-QVAPGEAPTCDHHCHNHLG-------GFYCSCRAGYVLHRNKRTCS 43
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 29.0 bits (65), Expect = 0.087
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 8/40 (20%)
Query: 189 NGGCEQLCFSYPVEFPQNKLHYKCDCATG-TPSASDPKKC 227
G C +C + P ++C C + C
Sbjct: 8 GGFCSGVCHNLPG-------TFECICGPDSALAGQIGTDC 40
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 27.4 bits (61), Expect = 0.33
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 182 NPCFRTGNGGCE-QLCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
+ C + G C+ C + ++C C TG D + C
Sbjct: 4 DEC-QELPGLCQGGKCINTFG-------SFQCRCPTGYYLNEDTRVC 42
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 30.1 bits (66), Expect = 0.49
Identities = 18/130 (13%), Positives = 35/130 (26%), Gaps = 5/130 (3%)
Query: 90 DVYWVDAKLDLIQKISYNGG-NRQIIRRNLPNPMGIAVHKS-DVYWVDRNLRTVYKASKL 147
++ +D I KI+ ++ + NP I +HK ++
Sbjct: 52 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111
Query: 148 ASTNITLPTPIRTGLSGLR---DIAIFDIVNQPPDENNPCFRTGNGGCEQLCFSYPVEFP 204
A+ N I LS D+ + GG + + P
Sbjct: 112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP 171
Query: 205 QNKLHYKCDC 214
+ +
Sbjct: 172 IIQNISVANG 181
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 25.9 bits (57), Expect = 1.1
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 182 NPCFRTGNGGCEQ-LCFSYPVEFPQNKLHYKCDCATGTPSASDPKKC 227
+ C + C +C + Y+C+C G + + C
Sbjct: 3 DEC-QRDPLLCRGGVCHNTEG-------SYRCECPPGHQLSPNISAC 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.413
Gapped
Lambda K H
0.267 0.0666 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,551,004
Number of extensions: 72811
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 31
Length of query: 407
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 320
Effective length of database: 1,213,086
Effective search space: 388187520
Effective search space used: 388187520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)