BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9502
(493 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 200/386 (51%), Gaps = 26/386 (6%)
Query: 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
+ + L N E+L+ +A+VNFYADWCRF L P+ EE + ++ ++P +NQVV A
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 177 QINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLE 236
+++CD+ I + I+KYPTLK+ RNG + EYR QR+ +AL ++I ++ DP+ ++
Sbjct: 65 RVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIR 124
Query: 237 EAPKFNVHDKTL--MLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAGPP----- 289
+ + D++ ++G F K+S Y +F RV + + D C + F P
Sbjct: 125 DLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILH--DDCAFLSAFGDVSKPERYSG 182
Query: 290 -DVTLQTEDHT---EAFQGVFERSRLV-QWFTEKCVPLVREITYENAEEISEEGRPLLIL 344
++ + H+ + G + W +KCVPLVREIT+EN EE++EEG P LIL
Sbjct: 183 DNIIYKPPGHSAPDXVYLGAXTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLIL 242
Query: 345 CHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTAD-DLFYQRIFYHHLHLSSDDLPVLRLD 403
H D S+ IF+ V + ++F+ AD D F + H+ + D PV+ +D
Sbjct: 243 FHXKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPLL--HIQKTPADCPVIAID 300
Query: 404 DYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRRRKAELQANVEDV 463
++H Y + P L V D SGKLH ++H G + D + Q
Sbjct: 301 SFRHXYVFGDFKDVL-IPGKLKQFVFDLHSGKLHREFHHG-PDPTDTAPGEQAQD----- 353
Query: 464 FPIYELETESMFRNLTPSKLRYTLLK 489
+ ES F+ L PS+ RYTLL+
Sbjct: 354 --VASSPPESSFQKLAPSEYRYTLLR 377
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 64.3 bits (155), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V LR++NF E L+ +K +V FYA WC C L P E A + +++ +A++
Sbjct: 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAP---EYAKAAGKLKAEGSEIRLAKV 65
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG-LATRSEYRSQRTTEALLNFIAE 226
+ EE + + + YPT+K RNG A+ EY + R + ++N++ +
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKK 114
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V L +NNF + +++ + + FYA WC C L P EE + ++P V +A++
Sbjct: 2 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEE---LSKKEFPGLAGVKIAEV 57
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230
+C E I + + YPTL + R G SE+ R ++L F+ + KD
Sbjct: 58 DCTAERNICSKYSVRGYPTLLLFRGGKKV-SEHSGGRDLDSLHRFVLSQAKD 108
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
VK+L NF E +++ K+ VV+F+A+WC C +L PV+EE A YP QV ++
Sbjct: 8 VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELA----NDYP---QVAFGKL 60
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
N +E I + I PT+ +NG
Sbjct: 61 NTEESQDIAMRYGIMSLPTIMFFKNG 86
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L +NNF + +++ + + FYA WC C L P EE + ++P V +A+++C
Sbjct: 12 LTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELS---KKEFPGLAGVKIAEVDCT 67
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230
E I + + YPTL + R G SE+ R ++L F+ + KD
Sbjct: 68 AERNICSKYSVRGYPTLLLFRGGKKV-SEHSGGRDLDSLHRFVLSQAKD 115
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 59.7 bits (143), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V +L NF L+ +++AVV+F+A+WC C +L P++EE A YP QV ++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELA----EDYP---QVGFGKL 53
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
N DE P I + + PT+ ++G
Sbjct: 54 NSDENPDIAARYGVMSLPTVIFFKDG 79
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L ++NF +V++ + +V FYA WC C L P E+ A + + P + +A+++
Sbjct: 12 LTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP---PIPLAKVDAT 68
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
E+ + F ++ YPTLKI R G +Y R +++++ E+
Sbjct: 69 EQTDLAKRFDVSGYPTLKIFRKGRPF--DYNGPREKYGIVDYMIEQ 112
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
NF E L Q+ L +V+F+A+WC C + P+LEE A +Y + +++VA+++ DE P+
Sbjct: 11 NFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA----KEY--EGKLLVAKLDVDENPK 64
Query: 186 IRDFFHITKYPTLKIIRNG 204
+ + PT+ + ++G
Sbjct: 65 TAXRYRVXSIPTVILFKDG 83
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 6/79 (7%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
NF E L Q+ L +V+F+A+WC C + P+LEE A +Y + +++VA+++ DE P+
Sbjct: 10 NFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA----KEY--EGKLLVAKLDVDENPK 63
Query: 186 IRDFFHITKYPTLKIIRNG 204
+ + PT+ + ++G
Sbjct: 64 TAXRYRVXSIPTVILFKDG 82
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L + NF EV++ + +V FYA WC C L P E+ A + + P + +A+++
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP---PIPLAKVDAT 191
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
E + F ++ YPTLKI R G +Y R +++++ E+
Sbjct: 192 AETDLAKRFDVSGYPTLKIFRKGRPY--DYNGPREKYGIVDYMIEQ 235
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF ++ ++ FYA WC C P E+ A I+ +D + VA+I+
Sbjct: 20 LNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD---KDPPIPVAKIDAT 76
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAE 226
+ F ++ YPT+KI++ G A +Y RT E ++ + E
Sbjct: 77 SASVLASRFDVSGYPTIKILKKGQAV--DYEGSRTQEEIVAKVRE 119
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L +NNF + +++ + + FYA WC C L P EE + ++P V +A+++C
Sbjct: 10 LTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELS---KKEFPGLAGVKIAEVDCT 65
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
E I + + YPTL + R G SE+ R ++L F+ +
Sbjct: 66 AERNICSKYSVRGYPTLLLFRGGKKV-SEHSGGRDLDSLHRFVLSQ 110
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 7/114 (6%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L + F ++ +L VNFY+ C CH L P E A V D + + +NC
Sbjct: 102 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV------DGLLRIGAVNCG 155
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDL 235
++ + + YP+L I R+G+A +Y R+ E+L+ F + ++ V +L
Sbjct: 156 DDRMLCRMKGVNSYPSLFIFRSGMAA-VKYNGDRSKESLVAFAMQHVRSTVTEL 208
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF + + K +V+F+A WC C ++ PVLEE A ++V VA++N D
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAE------AHADKVTVAKLNVD 58
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRS--EYRSQRTTEALL 221
E P F I PTL + + G + Y+ + EA L
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF + + K +V+F+A WC C ++ PVLEE A ++V VA++N D
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAE------AHADKVTVAKLNVD 58
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRS--EYRSQRTTEALL 221
E P F I PTL + + G + Y+ + EA L
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 6/126 (4%)
Query: 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
+ V L ++F E + + L + F+A WC C + P + A + + + +A
Sbjct: 14 SAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL-----VEKNITLA 68
Query: 177 QINCDEEPRIRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAEELKDPVMDL 235
QI+C E + +I +P+LKI +N S +Y RT EA++ F+ ++ + V +
Sbjct: 69 QIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVV 128
Query: 236 EEAPKF 241
+ P +
Sbjct: 129 ADLPAY 134
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 89 SLSSHVDDWLLS-RNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAV-VNFYADWC 146
++ S V D+L +P++ + + + N + V L N E+++ K V V +YA WC
Sbjct: 330 AIESLVKDFLKGDASPIVKSQEI-FENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWC 388
Query: 147 RFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLA 206
C L P +E A DT + V++A+++ E +R I YPT+ + G
Sbjct: 389 GHCKRLAPTYQELA---DTYANATSDVLIAKLDHTEN-DVRGVV-IEGYPTIVLYPGGKK 443
Query: 207 TRS-EYRSQRTTEALLNFIAE 226
+ S Y+ R+ ++L +FI E
Sbjct: 444 SESVVYQGSRSLDSLFDFIKE 464
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 11/125 (8%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 11 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 64
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALL--NFIAEELKD 230
VA++N D+ P + I PTL + +NG AT+ S+ + L N ++
Sbjct: 65 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMES 124
Query: 231 PVMDL 235
VM L
Sbjct: 125 TVMVL 129
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF + + +V+F+A WC C ++ PVLEE A ++V VA++N D
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE------AHADKVTVAKLNVD 58
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRS--EYRSQRTTEALL 221
E P F I PTL + + G + Y+ + EA L
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLEAQL 100
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF + + +V+F+A WC C ++ PVLEE A ++V VA++N D
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE------AHADKVTVAKLNVD 58
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRS--EYRSQRTTEALL 221
E P F I PTL + + G + Y+ + EA L
Sbjct: 59 ENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQL 100
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L NF ++ ++ FYA WC C P E+ A+ T D + VA+I+
Sbjct: 22 LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAS---TLKDNDPPIAVAKIDAT 78
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAE 226
+ F ++ YPT+KI++ G A +Y RT E ++ + E
Sbjct: 79 SASMLASKFDVSGYPTIKILKKGQAV--DYDGSRTQEEIVAKVRE 121
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
T+VLS K +V+F+A WC C ++ PVLEE A T+ D + VA+++ D P
Sbjct: 24 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIA----TERATD--LTVAKLDVDTNPETA 77
Query: 188 DFFHITKYPTLKIIRNG 204
F + PTL + ++G
Sbjct: 78 RNFQVVSIPTLILFKDG 94
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L + NF EV+ KL +V+ +A+WC CHL +P+ ++ A + V ++N D
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAE------KYKGKAVFGRLNVD 62
Query: 182 EEPRIRDFFHITKYPTLKIIRNG 204
E +I D + + PT I NG
Sbjct: 63 ENQKIADKYSVLNIPTTLIFVNG 85
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
T+VLS K +V+F+A WC C ++ PVLEE A T+ D + VA+++ D P
Sbjct: 19 TDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIA----TERATD--LTVAKLDVDTNPETA 72
Query: 188 DFFHITKYPTLKIIRNG 204
F + PTL + ++G
Sbjct: 73 RNFQVVSIPTLILFKDG 89
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 29/242 (11%)
Query: 122 LRQNNFTEVLS---QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
L +NF +S L +V F+A WC L P E A + P +A++
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVP------LAKV 59
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD---PVMDL 235
+C + + ++ YPTLKI R+G + Y RT + +++ + ++ P+
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGA-YDGPRTADGIVSHLKKQAGPASVPLRTE 118
Query: 236 EEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCST------FNHFDVCKCFARFRHAG-- 287
EE KF ++G F+ S + F + S F H +V + G
Sbjct: 119 EEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYDDNGEG 178
Query: 288 -----PPDVTLQTEDHTEAF-QGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPL 341
P +T + ED T A+ + ++ ++ E + +T +N + I +G+ L
Sbjct: 179 IILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLI--QGKDL 236
Query: 342 LI 343
LI
Sbjct: 237 LI 238
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 105 LCTHPLHYTNNTTRVKYLRQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIV 163
L + P+ +N+ VK + NF E+++ + K ++ FYA WC C L+P +E +
Sbjct: 341 LKSEPIPESNDGP-VKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE----L 395
Query: 164 DTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII-RNGLATRSEYRSQRTTEALLN 222
+ +D +V+A+++ + + + +PT+ N +Y R ++
Sbjct: 396 GEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFIS 454
Query: 223 FIAEELKDPVMDLEE 237
++ E +P + EE
Sbjct: 455 YLQREATNPPVIQEE 469
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC +C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 9/115 (7%)
Query: 113 TNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+ ++ V+ + N+ E+L + + FYA WC C L+P E A ++ +D +
Sbjct: 3 SGSSGNVRVITDENWRELLEGDWM--IEFYAPWCPACQNLQPEWESFA-----EWGEDLE 55
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
V +A+++ E+P + F I PT+ ++G R Y+ RT + +NFI+++
Sbjct: 56 VNIAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRR--YQGPRTKKDFINFISDK 108
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+LEE A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L +++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
Q F ++SQ +L +V+F+A+WC C + P EE + ++V +++ DE
Sbjct: 16 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY-------TKMVFIKVDVDEV 68
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +IT PT K+ +NG
Sbjct: 69 SEVTEKENITSMPTFKVYKNG 89
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 112 YTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDN 171
Y N++ KYL K A+V+FYADWC C ++ P+LEE + +Y
Sbjct: 39 YENHSKEWKYLGD----------KPAIVDFYADWCGPCKMVAPILEE----LSKEYA--G 82
Query: 172 QVVVAQINCDEEPRIRDFFHITKYPTL 198
++ + ++N D+EP + F I PT+
Sbjct: 83 KIYIYKVNVDKEPELARDFGIQSIPTI 109
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 16/87 (18%)
Query: 112 YTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDN 171
Y N++ KYL K A+V+FYADWC C ++ P+LEE + +Y
Sbjct: 39 YENHSKEWKYLGD----------KPAIVDFYADWCGPCKMVAPILEE----LSKEYA--G 82
Query: 172 QVVVAQINCDEEPRIRDFFHITKYPTL 198
++ + ++N D+EP + F I PT+
Sbjct: 83 KIYIYKVNVDKEPELARDFGIQGIPTI 109
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRSIPTLLLFKNG 84
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 129 EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
+VL L +V+F+A+WC C ++ P L E + ++ +V VA++N D+ P +
Sbjct: 15 DVLKASGLVLVDFWAEWCGPCKMIGPALGE----IGKEFA--GKVTVAKVNIDDNPETPN 68
Query: 189 FFHITKYPTLKIIRNG 204
+ + PTL ++R+G
Sbjct: 69 AYQVRSIPTLMLVRDG 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A D Q ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD--DYQ----GKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 126 NFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
N+ E VL K ++ FYA WC C L P EE A+ +D +VV+A+++
Sbjct: 16 NYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD-RVVIAKVDATAND 74
Query: 185 RIRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAEELK 229
+ D I +PT+K+ G + Y RT E L+ FIAE K
Sbjct: 75 -VPD--EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGK 117
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----EEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 55
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 56 VAKLNIDQNPGTAPKYGIRGTPTLLLFKNG 85
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 118 RVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++ VA
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLTVA 56
Query: 177 QINCDEEPRIRDFFHITKYPTLKIIRNG 204
++N D+ P + I PTL + +NG
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L + F ++ +L VNFY+ H L P E A VD + + +NC
Sbjct: 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVD------GLLRIGAVNCG 174
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKF 241
++ + + YP+L I R+G+A +Y R+ E+L+ F + ++ V +L
Sbjct: 175 DDRMLCRMKGVNSYPSLFIFRSGMAA-VKYNGDRSKESLVAFAMQHVRSTVTELSTGNFV 233
Query: 242 NVHDKTLMLG 251
N + G
Sbjct: 234 NAIETAFAAG 243
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Query: 122 LRQNNFTEVLSQYKL-AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180
L F E + Q K VV+FYA W P E A ++ +V +++C
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK------GKVRAGKVDC 715
Query: 181 DEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ------RTTEALLNFIAEELKDPV 232
P+ I YP++K+ + A +S + Q +T AL+ E L+ V
Sbjct: 716 QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQV 773
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ F + ++ L +V+F+A WC C L+ P+LEE A ++ V ++N DE
Sbjct: 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELAR------DHAGRLKVVKVNVDEH 93
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
P + + + PTL + R G
Sbjct: 94 PGLAARYGVRSVPTLVLFRRG 114
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ F ++Q KL VV+FYA WC C ++ P++E+ + QYPQ + +++ DE
Sbjct: 9 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFS----EQYPQAD---FYKLDVDELG 61
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ ++ PTL + +NG
Sbjct: 62 DVAQKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ F ++Q KL VV+FYA WC C ++ P++E+ + QYPQ + +++ DE
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFS----EQYPQAD---FYKLDVDELG 67
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ ++ PTL + +NG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNG 87
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
T+VLS K +V+F+A WC ++ PVLEE A T+ D + VA+++ D P
Sbjct: 21 TDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIA----TERATD--LTVAKLDVDTNPETA 74
Query: 188 DFFHITKYPTLKIIRNG 204
F + PTL + ++G
Sbjct: 75 RNFQVVSIPTLILFKDG 91
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L +F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 6/67 (8%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K A+V+FYADWC C ++ P+L+E A +Y D Q+V+ +++ ++E + F I
Sbjct: 39 KPAIVDFYADWCGPCKMVAPILDELA----KEY--DGQIVIYKVDTEKEQELAGAFGIRS 92
Query: 195 YPTLKII 201
P++ I
Sbjct: 93 IPSILFI 99
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 48.5 bits (114), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ ++ ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 8/91 (8%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWC-RFCHLLKPVLEETAAIVDTQYPQDNQV 173
+ ++ +L ++F T+VL +V+F+A+WC R C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIA----DEY--QGKL 54
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 TVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 85
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L++ A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC C L+ +L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ F +V K+ V++F+A WC C ++ PV E+ I DT P ++V +++ DE+
Sbjct: 24 DQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEK---ISDT--PAGDKVGFYKVDVDEQS 78
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+I I PT +NG
Sbjct: 79 QIAQEVGIRAMPTFVFFKNG 98
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
V++F+A WC C P+ ETAA + +V ++N + EP + F I PT
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAA------ERAGKVRFVKVNTEAEPALSTRFRIRSIPT 112
Query: 198 LKIIRNG 204
+ + RNG
Sbjct: 113 IXLYRNG 119
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 114 NNTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+++ ++ +L ++F T+VL +V+F+A+WC ++ P+L+E A +Y +
Sbjct: 19 SHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA----DEY--QGK 72
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+ VA++N D+ P + I PTL + +NG
Sbjct: 73 LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 122 LRQNNFT-EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180
L +NF EV+ L +V FYA WC C L P ++ A + + V V +N
Sbjct: 22 LTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATAL------KDVVKVGAVNA 75
Query: 181 DEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLN 222
D+ + + + +PT+KI +Y+ RT EA+++
Sbjct: 76 DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVD 117
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC C L+ PV++E A +Y ++ V ++N DE P I ++I PT
Sbjct: 21 MVDFWAPWCGPCKLIAPVIDELA----KEY--SGKIAVYKLNTDEAPGIATQYNIRSIPT 74
Query: 198 LKIIRNG 204
+ +NG
Sbjct: 75 VLFFKNG 81
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF 189
VL +V+F+A WC C L+ PV++E A +Y ++ V ++N DE P I
Sbjct: 14 VLESEVPVMVDFWAPWCGPCKLIAPVIDELA----KEY--SGKIAVYKLNTDEAPGIATQ 67
Query: 190 FHITKYPTLKIIRNG 204
++I PT+ +NG
Sbjct: 68 YNIRSIPTVLFFKNG 82
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 122 LRQNNFTEVLS---QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
L +NF +S L +V F+A WC C L P E A + P +A++
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP------LAKV 59
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
+C + + ++ YPTLKI R+G Y RT + +++ + ++
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDG-EEAGAYDGPRTADGIVSHLKKQ 107
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+VL +V+F+A+WC ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + I PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL V++F+A WC C ++ P L E + TQ+ DN VVV +++ DE I ++I+
Sbjct: 26 KLVVLDFFATWCGPCKMISPKLVE----LSTQF-ADN-VVVLKVDVDECEDIAMEYNISS 79
Query: 195 YPTLKIIRNGL 205
PT ++NG+
Sbjct: 80 MPTFVFLKNGV 90
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL V++F+A WC C ++ P L E + TQ+ DN VVV +++ DE I ++I+
Sbjct: 21 KLVVLDFFATWCGPCKMISPKLVE----LSTQF-ADN-VVVLKVDVDECEDIAMEYNISS 74
Query: 195 YPTLKIIRNGL 205
PT ++NG+
Sbjct: 75 MPTFVFLKNGV 85
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ F ++Q KL VV+FYA WC ++ P++E+ + QYPQ + +++ DE
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFS----EQYPQAD---FYKLDVDELG 67
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ ++ PTL + +NG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNG 87
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 45.4 bits (106), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC C ++ PVLEE AA D + D + +++ DE P + + PT
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAA--DYEGKAD----ILKLDVDENPSTAAKYEVMSIPT 77
Query: 198 LKIIRNG 204
L + ++G
Sbjct: 78 LIVFKDG 84
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC C ++ PVLEE AA D + D + +++ DE P + + PT
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAA--DYEGKAD----ILKLDVDENPSTAAKYEVMSIPT 76
Query: 198 LKIIRNG 204
L + ++G
Sbjct: 77 LIVFKDG 83
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC C ++ PVLEE AA D + D + +++ DE P + + PT
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAA--DYEGKAD----ILKLDVDENPSTAAKYEVMSIPT 77
Query: 198 LKIIRNG 204
L + ++G
Sbjct: 78 LIVFKDG 84
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 124 QNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
Q +FT+ L++ KL V++FYA WC C ++ P LEE + + + VV +++ D
Sbjct: 8 QEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSM-------SDVVFLKVDVD 60
Query: 182 EEPRIRDFFHITKYPTLKIIRNG 204
E I I PT ++NG
Sbjct: 61 ECEDIAQDNQIACMPTFLFMKNG 83
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 119 VKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
+K++ ++F + VL K +V+F+A WC C + P LE AA +Y +++ + +
Sbjct: 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAA----EY--GDKIEIVK 60
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNGLATRS 209
+N DE P + + PTL + + G ++
Sbjct: 61 LNIDENPGTAAKYGVMSIPTLNVYQGGEVAKT 92
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 7/90 (7%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ ++ +L ++F T+++ +V+F+A+WC C ++ P+L+E A +Y ++
Sbjct: 1 SDKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIA----DEY--QGKLT 54
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
VA++N D+ P + PTL + +NG
Sbjct: 55 VAKLNIDQNPGTAPKYIERGIPTLLLFKNG 84
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
VV+F+A WC C +L P LE+ A Q +VV+A+++ D+ + + ++ PT
Sbjct: 35 VVDFHAQWCGPCKILGPRLEKMVA------KQHGKVVMAKVDIDDHTDLAIEYEVSAVPT 88
Query: 198 LKIIRNG 204
+ ++NG
Sbjct: 89 VLAMKNG 95
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 122 LRQNNFTEVLSQYKLAVVNFY--ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ ++N +VL Q V FY ++ + C L P+LE AA QY + Q ++A+++
Sbjct: 12 INESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAA----QY--NGQFILAKLD 65
Query: 180 CDEEPRIRDFFHITKYPTLKIIRNG 204
CD E I F + PT+ + +NG
Sbjct: 66 CDAEQMIAAQFGLRAIPTVYLFQNG 90
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 122 LRQNNFTEVLSQYKLAV-VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180
+ + F V+ + + V V+F+A WC C ++ PV++E A +Y +++ ++N
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAG----EY--KDKLKCVKLNT 59
Query: 181 DEEPRIRDFFHITKYPTLKIIRNG 204
DE P + + I PT+ + + G
Sbjct: 60 DESPNVASEYGIRSIPTIMVFKGG 83
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF 189
VL +V+F+A WC L+ PV++E A +Y ++ V ++N DE P I
Sbjct: 14 VLESEVPVMVDFWAPWCGPSKLIAPVIDELA----KEY--SGKIAVYKLNTDEAPGIATQ 67
Query: 190 FHITKYPTLKIIRNG 204
++I PT+ +NG
Sbjct: 68 YNIRSIPTVLFFKNG 82
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 21/104 (20%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWC---------RF-----CHLLKPVLEETA 160
+ ++ +L ++F T+VL +V+F+A+WC R+ C ++ P+L+E A
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 161 AIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+Y ++ VA++N D+ P + I PTL + +NG
Sbjct: 62 ----DEY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+N EVL K +V+F+A WC C ++ P++EE A +Y + +V V ++N DE
Sbjct: 9 ENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELA----KEY--EGKVKVVKVNVDEN 62
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
P + I PTL + +NG
Sbjct: 63 PNTAAQYGIRSIPTLLLFKNG 83
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC ++ PVLEE AA D + D + +++ DE P + + PT
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAA--DYEGKAD----ILKLDVDENPSTAAKYEVMSIPT 77
Query: 198 LKIIRNG 204
L + ++G
Sbjct: 78 LIVFKDG 84
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 103 PVLCTHPLHYTNNTTRVKYLRQNNFTEV-LSQYKLAVVNFYADWCRFCHLLKPVLEETAA 161
P L + L + VK L NF +V + K V FYA WC C L P+ ++
Sbjct: 235 PHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDK--- 291
Query: 162 IVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII-RNGLATRSEYRSQRTTEAL 220
+ Y +V+A++ D + + +PTLK + T +Y +RT +
Sbjct: 292 -LGETYKDHENIVIAKM--DSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGF 348
Query: 221 LNFIAEELKD 230
F+ +D
Sbjct: 349 KKFLESGGQD 358
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 122 LRQNNFTEVLSQYKLAVVNFY--ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ ++N + L Q V FY ++ + C L PVLE AA QY Q ++A+++
Sbjct: 12 INESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAA----QY--HGQFILAKLD 65
Query: 180 CDEEPRIRDFFHITKYPTLKIIRNG 204
CD E I F + PT+ + +NG
Sbjct: 66 CDAEQXIAAQFGLRAIPTVYLFQNG 90
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
Query: 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195
+ + +F+A WC C ++ PVLEE +D + +++ + +I+ DE + +
Sbjct: 19 VVLADFWAPWCGPCKMIAPVLEE----LDQE--MGDKLKIVKIDVDENQETAGKYGVMSI 72
Query: 196 PTLKIIRNG--LATRSEYRSQRTTEALLN 222
PTL ++++G + T ++ + + L+N
Sbjct: 73 PTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 116 TTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVV 175
T+ K F ++ Q V++FYA WC C +++P L + + YP V
Sbjct: 12 TSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYP---DVRF 64
Query: 176 AQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+ + DE P I +T PT + ++G
Sbjct: 65 VKCDVDESPDIAKECEVTAMPTFVLGKDG 93
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 122 LRQN-NFTEVLSQYK--LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
L+Q+ + +L Q+K L VV+F+A WC C + P+ +E + D + ++
Sbjct: 9 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--------IFVKV 60
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
+ D+ ++I+ PT I+NG
Sbjct: 61 DVDKLEETARKYNISAMPTFIAIKNG 86
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Query: 119 VKYLRQNNFTEV-LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
VK L NF +V + K V FYA WC C L P+ ++ + Y +V+A+
Sbjct: 9 VKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDK----LGETYKDHENIVIAK 64
Query: 178 INCDEEPRIRDFFHITKYPTLKII-RNGLATRSEYRSQRTTEALLNFI 224
+ D + + +PTLK + T +Y +RT + F+
Sbjct: 65 M--DSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFL 110
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 122 LRQN-NFTEVLSQYK--LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
L+Q+ + +L Q+K L VV+F+A WC C + P+ +E + D + ++
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDA--------IFVKV 69
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
+ D+ ++I+ PT I+NG
Sbjct: 70 DVDKLEETARKYNISAMPTFIAIKNG 95
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL +++F A WC C ++ PV E A ++P + +++ DE + + +++
Sbjct: 29 KLVIIDFTASWCGPCRVIAPVFAEYA----KKFP---GAIFLKVDVDELKDVAEAYNVEA 81
Query: 195 YPTLKIIRNG 204
PT I++G
Sbjct: 82 MPTFLFIKDG 91
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 129 EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
E + KL V++F A WC C ++ PV + A ++P V +++ DE I +
Sbjct: 29 EANTAKKLVVIDFTASWCGPCRIMAPVFADLA----KKFP---NAVFLKVDVDELKPIAE 81
Query: 189 FFHITKYPTLKIIRNG 204
F + PT ++ G
Sbjct: 82 QFSVEAMPTFLFMKEG 97
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A C C ++ PVLEE AA D + D + +++ DE P + + PT
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAA--DYEGKAD----ILKLDVDENPSTAAKYEVMSIPT 76
Query: 198 LKIIRNG 204
L + ++G
Sbjct: 77 LIVFKDG 83
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF 189
VL + +V FYA WC C L+P E AA + + +V +A ++ +
Sbjct: 21 VLDSEDVWMVEFYAPWCGHCKNLEP--EWAAAASEVKEQTKGKVKLAAVDATVNQVLASR 78
Query: 190 FHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD---PVMDLEEAP 239
+ I +PT+KI + G + +Y RT +++ + D P LE P
Sbjct: 79 YGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDNAPPPELLESGP 130
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ +F + KL VV+F A WC C ++ P+ E A ++P V +++ DE
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELA----KKFP---NVTFLKVDVDEL 68
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +++ PT +++G
Sbjct: 69 KAVAEEWNVEAMPTFIFLKDG 89
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K+ +++F A WC C + PV E A ++P V +++ DE + + +++
Sbjct: 37 KVVIIDFTASWCGPCRFIAPVFAEYA----KKFP---GAVFLKVDVDELKEVAEKYNVEA 89
Query: 195 YPTLKIIRNG 204
PT I++G
Sbjct: 90 MPTFLFIKDG 99
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 122 LRQNNFTEVLSQYKLA-VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180
L F E + Q K VV+FYA WC C P E A ++ +V +++C
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMI------KGKVRAGKVDC 61
Query: 181 DEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ------RTTEALLNFIAEELKDPV 232
P+ I YP++K+ + A +S + Q +T AL+ E L+ V
Sbjct: 62 QAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQV 119
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + + I
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDAQDVAPKYGIRG 73
Query: 195 YPTLKIIRNG 204
PTL + +NG
Sbjct: 74 IPTLLLFKNG 83
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F+A WC C ++ P++E+ A Q + +++ DE + ++
Sbjct: 20 KLVVVDFFATWCGPCKMIAPMIEKFAE-------QYSDAAFYKLDVDEVSDVAQKAEVSS 72
Query: 195 YPTLKIIRNG 204
PTL + G
Sbjct: 73 MPTLIFYKGG 82
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F+A WC C ++ P++E+ A Q + +++ DE + ++
Sbjct: 27 KLVVVDFFATWCGPCKMIAPMIEKFAE-------QYSDAAFYKLDVDEVSDVAQKAEVSS 79
Query: 195 YPTLKIIRNG 204
PTL + G
Sbjct: 80 MPTLIFYKGG 89
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
+L VV+F+A WC C + P +E A + +V A+++ D+ + +T
Sbjct: 20 RLIVVDFFAQWCGPCRNIAPKVEALAKEIP-------EVEFAKVDVDQNEEAAAKYSVTA 72
Query: 195 YPTLKIIRNG 204
PT I++G
Sbjct: 73 MPTFVFIKDG 82
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195
+ + +F+A WC ++ PVLEE +D + +++ + +I+ DE + +
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEE----LDQE--MGDKLKIVKIDVDENQETAGKYGVMSI 72
Query: 196 PTLKIIRNG--LATRSEYRSQRTTEALLN 222
PTL ++++G + T ++ + + L+N
Sbjct: 73 PTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 36.2 bits (82), Expect = 0.040, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195
+ + +F+A WC ++ PVLEE +D + +++ + +I+ DE + +
Sbjct: 19 VVLADFWAPWCGPSKMIAPVLEE----LDQE--MGDKLKIVKIDVDENQETAGKYGVMSI 72
Query: 196 PTLKIIRNG--LATRSEYRSQRTTEALLN 222
PTL ++++G + T ++ + + L+N
Sbjct: 73 PTLLVLKDGEVVETSVGFKPKEALQELVN 101
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD--EEPRIRDFFHITK 194
++V FYA WC C L + A + D V VA +NCD + + + +
Sbjct: 38 SLVEFYAPWCGHCKKLSSTFRKAAKRL------DGVVQVAAVNCDLNKNKALCAKYDVNG 91
Query: 195 YPTLKIIR 202
+PTL + R
Sbjct: 92 FPTLMVFR 99
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 35.4 bits (80), Expect = 0.079, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF 189
V+ K ++ FYA WC C L+P+ + +Y +V+A+++ D
Sbjct: 21 VMDPKKDVLIEFYAPWCGHCKQLEPIYTS----LGKKYKGQKDLVIAKMDATANDITNDQ 76
Query: 190 FHITKYPTLKIIRNG 204
+ + +PT+ +G
Sbjct: 77 YKVEGFPTIYFAPSG 91
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 35.0 bits (79), Expect = 0.095, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 129 EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
E + KL V++F A WC ++ PV + A ++P V +++ DE I +
Sbjct: 32 EANTAKKLVVIDFTASWCGPSRIMAPVFADLA----KKFP---NAVFLKVDVDELKPIAE 84
Query: 189 FFHITKYPTLKIIRNG 204
F + PT ++ G
Sbjct: 85 QFSVEAMPTFLFMKEG 100
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 114 NNTTRVKYLRQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+N VK + NF E+++ + K ++ FYA WC C L+P +E + + +D
Sbjct: 24 SNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKE----LGEKLSKDPN 79
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTL 198
+V+A+++ + + + +PT+
Sbjct: 80 IVIAKMDATAND-VPSPYEVRGFPTI 104
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
+EVL + +V F+A WC C L+ P++ A +++ V ++ D P
Sbjct: 19 SEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTY------SDRLKVVKLEIDPNPTTV 72
Query: 188 DFFHITKYPTLKIIR 202
+ + P L++++
Sbjct: 73 KKYKVEGVPALRLVK 87
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR---I 186
VL V F+A WC C P A V P + +A ++C EE
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRP---ALYLAALDCAEETNSAVC 82
Query: 187 RDFFHITKYPTLKII 201
RD F+I +PT++
Sbjct: 83 RD-FNIPGFPTVRFF 96
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K AV+ F+A WC C PV+ + AA +P+ V VA + D+ P +++F + K
Sbjct: 26 KPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGL--DQVPAMQEF--VNK 77
Query: 195 YP 196
YP
Sbjct: 78 YP 79
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K AV+ F+A WC C PV+ + AA +P+ V VA + D+ P +++F + K
Sbjct: 40 KPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGL--DQVPAMQEF--VNK 91
Query: 195 YP 196
YP
Sbjct: 92 YP 93
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F+A WC ++ P++E+ A Q + +++ DE + ++
Sbjct: 28 KLVVVDFFATWCGPSKMIAPMIEKFAE-------QYSDAAFYKLDVDEVSDVAQKAEVSS 80
Query: 195 YPTLKIIRNG 204
PTL + G
Sbjct: 81 MPTLIFYKGG 90
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F+A WC ++ P++E+ A Q + +++ DE + ++
Sbjct: 20 KLVVVDFFATWCGPSKMIAPMIEKFAE-------QYSDAAFYKLDVDEVSDVAQKAEVSS 72
Query: 195 YPTLKIIRNG 204
PTL + G
Sbjct: 73 MPTLIFYKGG 82
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDAQDVASEAEVKA 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 TPTFQFFKKG 83
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASECEVKS 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASESEVKS 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 32.3 bits (72), Expect = 0.67, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
L+QY K+ +VNF+A WC +C P + +P+ + VV+A
Sbjct: 36 LAQYRGKIVLVNFWASWCPYCRDEXPSXDRLV----KSFPKGDLVVLA 79
>pdb|3KH7|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Reduced Ccmg From Pseudomonas Aeruginosa
pdb|3KH9|A Chain A, Crystal Structure Of The Periplasmic Soluble Domain Of
Oxidized Ccmg From Pseudomonas Aeruginosa
Length = 176
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 127 FTEVLSQYKLAVVNFYADWCRFCHLLKPVL----EETAAIVDTQYPQDNQVVVAQIN 179
TE + K A+VN + WC C + P L E+ I Y DN + +N
Sbjct: 51 LTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQGVVIYGINYKDDNAAAIKWLN 107
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR--IR 187
VL V F+A WC P +E A V P N +A ++C EE +
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALN---LAVLDCAEETNSAVC 82
Query: 188 DFFHITKYPTLKIIR 202
F+I +PT++ +
Sbjct: 83 REFNIAGFPTVRFFQ 97
>pdb|2L6C|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Oxidized
Form
pdb|2L6D|A Chain A, Solution Structure Of Desulfothioredoxin From
Desulfovibrio Vulgaris Hildenborough In Its Reduced Form
Length = 110
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196
A+V F+ + C C ++ VL++ A + QV ++ ++ + P + + P
Sbjct: 22 AIVFFHKNLCPHCKNMEKVLDKFGA-------RAPQVAISSVDSEARPELMKELGFERVP 74
Query: 197 TLKIIRNG 204
TL IR+G
Sbjct: 75 TLVFIRDG 82
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASEXEVKC 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195
L VV+F A WC C + P + A + P V+ +++ DE + + I
Sbjct: 40 LVVVDFTASWCGPCRFIAPFFADLA----KKLP---NVLFLKVDTDELKSVASDWAIQAM 92
Query: 196 PTLKIIRNG 204
PT ++ G
Sbjct: 93 PTFMFLKEG 101
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASECEVKC 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC C ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASECEVKC 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 TPTFQFFKKG 83
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+V+F+A WC C + P + AA + QV +A+I+ P + I P
Sbjct: 68 LVDFWAPWCGPCRQMAPQFQAAAATL------AGQVRLAKIDTQAHPAVAGRHRIQGIPA 121
Query: 198 LKIIRNG 204
+ G
Sbjct: 122 FILFHKG 128
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF 190
L L VV+F+A W C + V+ E A + P QV ++ + P + + +
Sbjct: 35 LKAKSLLVVHFWAPWAPQCAQMNEVMAELA----KELP---QVSFVKLEAEGVPEVSEKY 87
Query: 191 HITKYPTLKIIRN 203
I+ PT +N
Sbjct: 88 EISSVPTFLFFKN 100
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 30.8 bits (68), Expect = 1.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 129 EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
+V K VV FY+ C +C +P EE A +Y + V +IN P +
Sbjct: 19 QVEDSKKPVVVXFYSPACPYCKAXEPYFEEYA----KEY--GSSAVFGRINIATNPWTAE 72
Query: 189 FFHITKYPTLKIIRNG 204
+ + PT K +G
Sbjct: 73 KYGVQGTPTFKFFCHG 88
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 133 QYKLAVVNFYADWCRFCHLLKPVLEETAA 161
Q K AV+ F+ WC FC+ P L + AA
Sbjct: 23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAA 51
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
++ F WC+ C +KP EE A+ + + A ++ ++ + +I P+
Sbjct: 21 IIMFTGSWCQPCKKMKPTFEEMAS------QMEGDIRFAYMDAEDAEKTMAELNIRTLPS 74
Query: 198 LKIIRNGL 205
L + +G+
Sbjct: 75 LALFVDGM 82
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF 190
L L VV+F+A W C + V+ E A + P QV ++ + P + + +
Sbjct: 29 LKAKSLLVVHFWAPWAPQCAQMNEVMAELA----KELP---QVSFVKLEAEGVPEVSEKY 81
Query: 191 HITKYPTLKIIRN 203
I+ PT +N
Sbjct: 82 EISSVPTFLFFKN 94
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 135 KLAVVNFYADWCRFCHLLKP 154
KL VV+F A WC C ++KP
Sbjct: 21 KLVVVDFSATWCGPCKMIKP 40
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 398 PVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFS 433
P L+ D + ++R P+ I +A P+ +V++VE Y +
Sbjct: 192 PFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMN 227
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC ++KP + + + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSE-------KYSNVIFLEVDVDDSQDVASESEVKS 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 135 KLAVVNFYADWCRFCHLLKP 154
KL VV+F A WC C ++KP
Sbjct: 21 KLVVVDFSATWCGPCKMIKP 40
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 398 PVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFS 433
P L+ D + ++R P+ I +A P+ +V++VE Y +
Sbjct: 189 PFLKPVDREPLWRFPNEIPIAGEPANIVALVEAYMN 224
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195
L +V+F+A WC C L +L A + V +++ D+ D + ++
Sbjct: 25 LVLVDFFATWCGPCQRLGQILPSIAE-------ANKDVTFIKVDVDKNGNAADAYGVSSI 77
Query: 196 PTLKIIR 202
P L ++
Sbjct: 78 PALFFVK 84
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC ++KP + +Y + V+ +++ D+ + +
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFFHS----LSEKY---SNVIFLEVDVDDAQDVASEAEVKA 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 TPTFQFFKKG 83
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 29.3 bits (64), Expect = 4.6, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC ++KP + + + V+ +++ D+ + + +
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSE-------KYSNVIFLEVDVDDCQDVASECEVKR 73
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 74 MPTFQFFKKG 83
>pdb|1NF4|A Chain A, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|B Chain B, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|C Chain C, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|D Chain D, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|E Chain E, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|F Chain F, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|G Chain G, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|H Chain H, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|I Chain I, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|J Chain J, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|K Chain K, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|L Chain L, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|M Chain M, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|N Chain N, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|O Chain O, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF4|P Chain P, X-Ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different States
(Reduced Structure)
pdb|1NF6|A Chain A, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|B Chain B, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|C Chain C, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|D Chain D, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|E Chain E, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|F Chain F, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|G Chain G, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|H Chain H, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|I Chain I, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|J Chain J, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|K Chain K, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|L Chain L, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|M Chain M, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|N Chain N, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|O Chain O, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NF6|P Chain P, X-ray Structure Of The Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Site In Different Catalytic
States ("cycled" Structure: Reduced In Solution And
Allowed To Reoxidise Before Crystallisation)
pdb|1NFV|A Chain A, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|B Chain B, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|C Chain C, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|D Chain D, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|E Chain E, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|F Chain F, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|G Chain G, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|H Chain H, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|I Chain I, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|J Chain J, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|K Chain K, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|L Chain L, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|M Chain M, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|N Chain N, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|O Chain O, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
pdb|1NFV|P Chain P, X-Ray Structure Of Desulfovibrio Desulfuricans
Bacterioferritin: The Diiron Centre In Different
Catalytic States (As-Isolated Structure)
Length = 179
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 9/67 (13%)
Query: 316 TEKCVPLVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVR---------DTIG 366
T + VP++ E + + E L +C GD+ + +F+RI+ + IG
Sbjct: 84 TGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIG 143
Query: 367 QYAQNLS 373
+ +NL
Sbjct: 144 SHIKNLG 150
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 28.9 bits (63), Expect = 6.5, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
KL VV+F A WC ++KP + +Y + V+ +++ D+ + +
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFFHS----LSEKY---SNVIFLEVDVDDCQDVASECEVKS 84
Query: 195 YPTLKIIRNG 204
PT + + G
Sbjct: 85 MPTFQFFKKG 94
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 133 QYKLAVVNFYADWCRFCHLLKPVLE 157
++K VV+F A WC C ++ P+ E
Sbjct: 23 EHKPIVVDFTATWCGPCKMIAPLFE 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,771,148
Number of Sequences: 62578
Number of extensions: 611921
Number of successful extensions: 1895
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 153
length of query: 493
length of database: 14,973,337
effective HSP length: 103
effective length of query: 390
effective length of database: 8,527,803
effective search space: 3325843170
effective search space used: 3325843170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)