Query psy9502
Match_columns 493
No_of_seqs 401 out of 3037
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 21:04:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0912|consensus 100.0 1.3E-81 2.9E-86 575.6 25.7 358 122-493 1-375 (375)
2 KOG0190|consensus 100.0 7.3E-47 1.6E-51 378.8 25.5 350 115-488 23-389 (493)
3 PTZ00102 disulphide isomerase; 100.0 1E-40 2.2E-45 351.0 32.2 316 117-447 32-353 (477)
4 TIGR01130 ER_PDI_fam protein d 100.0 1.9E-40 4.2E-45 347.5 31.3 347 118-488 2-369 (462)
5 KOG4277|consensus 100.0 2.5E-33 5.5E-38 257.0 18.5 303 117-434 28-353 (468)
6 KOG0190|consensus 100.0 5.4E-32 1.2E-36 271.9 14.4 139 85-229 333-474 (493)
7 PF01216 Calsequestrin: Calseq 100.0 7.1E-28 1.5E-32 226.9 29.5 321 107-439 24-375 (383)
8 cd03006 PDI_a_EFP1_N PDIa fami 99.9 3.3E-24 7.2E-29 178.2 11.6 109 109-224 1-113 (113)
9 cd02996 PDI_a_ERp44 PDIa famil 99.9 4.4E-23 9.5E-28 171.8 11.4 107 118-224 2-108 (108)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 1.6E-22 3.6E-27 166.2 10.4 100 118-224 2-101 (101)
11 KOG0191|consensus 99.9 5.3E-23 1.2E-27 209.4 9.0 204 10-231 42-255 (383)
12 cd03007 PDI_a_ERp29_N PDIa fam 99.9 9.5E-22 2.1E-26 162.3 8.7 100 118-227 2-115 (116)
13 PF00085 Thioredoxin: Thioredo 99.9 6.8E-21 1.5E-25 156.8 12.7 102 119-227 1-103 (103)
14 PTZ00102 disulphide isomerase; 99.9 2E-20 4.3E-25 197.0 19.3 144 85-233 325-470 (477)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 3.3E-21 7.3E-26 159.3 10.0 101 118-224 2-104 (104)
16 cd03065 PDI_b_Calsequestrin_N 99.8 1.1E-20 2.4E-25 158.1 11.6 113 110-228 2-119 (120)
17 cd02994 PDI_a_TMX PDIa family, 99.8 2E-20 4.4E-25 153.7 10.9 100 118-226 2-101 (101)
18 TIGR01130 ER_PDI_fam protein d 99.8 3E-18 6.5E-23 179.7 29.2 381 13-437 16-459 (462)
19 PF13848 Thioredoxin_6: Thiore 99.8 9.3E-19 2E-23 160.1 19.1 173 253-430 1-184 (184)
20 cd03002 PDI_a_MPD1_like PDI fa 99.8 9E-20 2E-24 152.0 10.7 101 119-225 2-109 (109)
21 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.6E-19 3.4E-24 148.6 11.0 101 119-224 2-102 (102)
22 cd02993 PDI_a_APS_reductase PD 99.8 1.1E-19 2.4E-24 151.4 10.1 102 118-224 2-109 (109)
23 KOG0910|consensus 99.8 2.2E-19 4.7E-24 152.0 11.0 106 117-229 43-149 (150)
24 KOG0191|consensus 99.8 6.3E-19 1.4E-23 179.6 16.6 197 118-321 30-254 (383)
25 cd03001 PDI_a_P5 PDIa family, 99.8 2.4E-19 5.1E-24 147.8 10.8 100 119-224 2-102 (103)
26 PTZ00443 Thioredoxin domain-co 99.8 4.5E-19 9.7E-24 164.7 11.6 108 116-230 29-141 (224)
27 cd02963 TRX_DnaJ TRX domain, D 99.8 9.5E-19 2.1E-23 146.1 10.4 101 120-226 7-110 (111)
28 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 9E-19 1.9E-23 144.5 10.1 101 119-224 2-104 (104)
29 cd02997 PDI_a_PDIR PDIa family 99.8 1.4E-18 3E-23 143.4 10.9 101 119-224 2-104 (104)
30 cd02999 PDI_a_ERp44_like PDIa 99.8 1.2E-18 2.7E-23 142.4 9.4 90 126-224 8-100 (100)
31 PRK09381 trxA thioredoxin; Pro 99.8 4.6E-18 1E-22 141.7 13.0 105 117-228 3-108 (109)
32 TIGR01126 pdi_dom protein disu 99.8 2E-18 4.3E-23 141.8 10.0 101 122-227 1-101 (102)
33 cd02998 PDI_a_ERp38 PDIa famil 99.8 2.8E-18 6E-23 141.8 10.3 102 119-224 2-105 (105)
34 cd02956 ybbN ybbN protein fami 99.8 4.3E-18 9.4E-23 138.4 10.7 94 125-225 1-96 (96)
35 COG3118 Thioredoxin domain-con 99.8 2.5E-18 5.5E-23 160.8 10.3 107 117-230 23-132 (304)
36 PRK10996 thioredoxin 2; Provis 99.8 1.1E-17 2.4E-22 145.3 13.2 105 116-227 34-138 (139)
37 PHA02278 thioredoxin-like prot 99.7 9.1E-18 2E-22 137.3 10.3 93 124-223 4-100 (103)
38 cd03000 PDI_a_TMX3 PDIa family 99.7 1.6E-17 3.6E-22 137.1 11.0 97 125-227 7-103 (104)
39 TIGR02187 GlrX_arch Glutaredox 99.7 1.8E-17 3.8E-22 155.3 12.3 180 15-226 19-214 (215)
40 TIGR00424 APS_reduc 5'-adenyly 99.7 1.8E-17 4E-22 168.7 11.5 107 115-226 349-461 (463)
41 PLN02309 5'-adenylylsulfate re 99.7 2E-17 4.4E-22 168.3 11.7 108 115-227 343-456 (457)
42 cd02954 DIM1 Dim1 family; Dim1 99.7 1.6E-17 3.5E-22 136.8 8.6 84 124-214 2-87 (114)
43 cd02992 PDI_a_QSOX PDIa family 99.7 4.1E-17 8.8E-22 136.8 11.1 101 118-221 2-109 (114)
44 cd02948 TRX_NDPK TRX domain, T 99.7 4.5E-17 9.7E-22 133.9 10.5 97 122-226 5-101 (102)
45 cd02961 PDI_a_family Protein D 99.7 2.8E-17 6.1E-22 134.2 8.9 100 121-224 2-101 (101)
46 cd02962 TMX2 TMX2 family; comp 99.7 9E-17 1.9E-21 140.5 11.9 93 115-213 26-126 (152)
47 cd02965 HyaE HyaE family; HyaE 99.7 9.8E-17 2.1E-21 131.2 9.9 98 117-221 10-109 (111)
48 cd02985 TRX_CDSP32 TRX family, 99.7 1.3E-16 2.8E-21 131.4 10.5 95 123-226 2-101 (103)
49 TIGR01068 thioredoxin thioredo 99.7 1.9E-16 4.1E-21 129.6 11.2 100 122-228 1-101 (101)
50 cd02957 Phd_like Phosducin (Ph 99.7 2.2E-16 4.8E-21 132.4 8.7 89 117-214 4-95 (113)
51 cd02989 Phd_like_TxnDC9 Phosdu 99.7 9.4E-16 2E-20 128.2 11.1 100 117-224 4-112 (113)
52 TIGR02187 GlrX_arch Glutaredox 99.6 9.2E-15 2E-19 136.9 17.4 182 125-317 11-214 (215)
53 cd02953 DsbDgamma DsbD gamma f 99.6 7E-16 1.5E-20 127.3 8.2 93 125-224 2-103 (104)
54 cd03072 PDI_b'_ERp44 PDIb' fam 99.6 2.2E-15 4.7E-20 125.2 10.3 111 323-435 1-111 (111)
55 cd02984 TRX_PICOT TRX domain, 99.6 2.3E-15 5E-20 122.5 10.1 93 124-224 2-96 (97)
56 PLN00410 U5 snRNP protein, DIM 99.6 4.4E-15 9.6E-20 127.1 11.3 101 123-229 10-121 (142)
57 KOG1731|consensus 99.6 2.7E-15 6E-20 150.9 10.7 123 102-228 25-153 (606)
58 cd02950 TxlA TRX-like protein 99.6 7.4E-15 1.6E-19 128.0 11.8 98 125-229 11-111 (142)
59 cd02949 TRX_NTR TRX domain, no 99.6 8.6E-15 1.9E-19 119.2 10.5 89 130-225 9-97 (97)
60 PTZ00051 thioredoxin; Provisio 99.6 5.6E-15 1.2E-19 120.5 9.2 92 120-220 3-95 (98)
61 KOG0907|consensus 99.6 7.4E-15 1.6E-19 120.2 9.4 86 132-226 19-104 (106)
62 cd02986 DLP Dim1 family, Dim1- 99.6 1E-14 2.2E-19 119.1 9.6 81 125-211 3-85 (114)
63 cd02987 Phd_like_Phd Phosducin 99.6 3E-14 6.4E-19 128.3 11.6 102 116-226 61-173 (175)
64 cd02947 TRX_family TRX family; 99.5 3.6E-14 7.8E-19 113.5 10.3 92 125-224 1-92 (93)
65 TIGR01295 PedC_BrcD bacterioci 99.5 9.8E-14 2.1E-18 117.4 10.6 100 117-225 6-121 (122)
66 cd02975 PfPDO_like_N Pyrococcu 99.5 7.9E-14 1.7E-18 116.6 9.7 95 127-228 15-110 (113)
67 KOG0908|consensus 99.5 1.5E-13 3.3E-18 124.5 9.8 105 119-232 3-110 (288)
68 cd02982 PDI_b'_family Protein 99.4 3.4E-13 7.5E-18 110.9 8.8 94 126-227 4-102 (103)
69 cd02951 SoxW SoxW family; SoxW 99.4 4.6E-13 1E-17 114.4 9.6 98 126-229 5-120 (125)
70 cd02988 Phd_like_VIAF Phosduci 99.4 8.6E-13 1.9E-17 120.4 10.7 101 115-226 80-190 (192)
71 KOG4277|consensus 99.4 1.4E-11 3.1E-16 114.3 18.1 268 13-320 41-352 (468)
72 TIGR00411 redox_disulf_1 small 99.4 3.2E-12 6.9E-17 100.4 9.2 80 137-227 2-81 (82)
73 cd02952 TRP14_like Human TRX-r 99.3 3.8E-12 8.2E-17 106.3 8.2 79 123-207 8-103 (119)
74 PTZ00062 glutaredoxin; Provisi 99.3 4.6E-11 9.9E-16 109.4 12.5 114 123-254 5-120 (204)
75 cd02983 P5_C P5 family, C-term 99.3 9E-11 2E-15 100.3 13.3 114 321-438 2-121 (130)
76 cd02959 ERp19 Endoplasmic reti 99.2 1.3E-11 2.8E-16 103.8 6.2 96 126-227 11-112 (117)
77 PHA02125 thioredoxin-like prot 99.2 6.3E-11 1.4E-15 91.3 7.6 69 138-222 2-71 (75)
78 TIGR00412 redox_disulf_2 small 99.1 2.3E-10 4.9E-15 88.4 7.2 72 139-224 3-75 (76)
79 PRK00293 dipZ thiol:disulfide 99.1 4.2E-10 9.1E-15 119.9 9.7 98 123-227 459-569 (571)
80 cd03070 PDI_b_ERp44 PDIb famil 99.1 3.2E-10 6.8E-15 89.2 6.2 78 232-311 1-90 (91)
81 TIGR02740 TraF-like TraF-like 99.1 7.6E-10 1.6E-14 106.8 10.2 88 134-229 166-265 (271)
82 PRK03147 thiol-disulfide oxido 99.0 1.7E-09 3.6E-14 97.8 11.5 103 119-226 46-170 (173)
83 cd02955 SSP411 TRX domain, SSP 99.0 1.1E-09 2.3E-14 92.6 8.5 79 123-207 4-94 (124)
84 PRK11509 hydrogenase-1 operon 99.0 3.3E-09 7.1E-14 89.6 10.9 107 120-232 20-128 (132)
85 TIGR02738 TrbB type-F conjugat 99.0 2E-09 4.4E-14 94.5 9.7 88 132-227 48-152 (153)
86 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.6E-09 3.4E-14 92.0 8.9 93 121-222 7-120 (123)
87 PF13098 Thioredoxin_2: Thiore 99.0 7.8E-10 1.7E-14 92.3 6.3 88 133-224 4-112 (112)
88 cd03073 PDI_b'_ERp72_ERp57 PDI 99.0 4.5E-09 9.8E-14 87.2 10.4 103 323-432 1-111 (111)
89 cd02982 PDI_b'_family Protein 99.0 4.4E-09 9.5E-14 86.3 10.0 99 329-432 3-103 (103)
90 cd03010 TlpA_like_DsbE TlpA-li 99.0 2.7E-09 5.9E-14 91.2 8.9 79 133-220 24-126 (127)
91 PRK14018 trifunctional thiored 99.0 2E-09 4.4E-14 111.6 9.5 91 131-227 53-172 (521)
92 cd03009 TryX_like_TryX_NRX Try 98.9 3.3E-09 7E-14 91.3 8.9 72 133-207 17-113 (131)
93 KOG0913|consensus 98.9 2.9E-10 6.3E-15 102.7 2.1 106 117-231 24-129 (248)
94 cd02973 TRX_GRX_like Thioredox 98.9 1.7E-09 3.6E-14 81.4 5.5 60 137-205 2-61 (67)
95 PF13848 Thioredoxin_6: Thiore 98.9 2.8E-08 6E-13 90.6 14.1 154 151-317 7-184 (184)
96 TIGR00385 dsbE periplasmic pro 98.9 1.1E-08 2.3E-13 92.6 10.5 88 131-228 60-171 (173)
97 cd02966 TlpA_like_family TlpA- 98.9 6.4E-09 1.4E-13 86.3 8.2 74 134-213 19-116 (116)
98 KOG0914|consensus 98.9 2.7E-09 5.9E-14 95.0 5.9 95 109-208 116-219 (265)
99 cd03026 AhpF_NTD_C TRX-GRX-lik 98.9 6.6E-09 1.4E-13 82.6 7.4 76 134-221 12-87 (89)
100 PRK15412 thiol:disulfide inter 98.8 2E-08 4.4E-13 91.7 10.5 88 132-229 66-177 (185)
101 cd02964 TryX_like_family Trypa 98.8 1.1E-08 2.4E-13 88.1 8.1 71 133-206 16-112 (132)
102 cd03008 TryX_like_RdCVF Trypar 98.8 2.3E-08 5.1E-13 86.8 8.1 75 133-207 24-126 (146)
103 PF13905 Thioredoxin_8: Thiore 98.8 2.5E-08 5.4E-13 80.5 7.5 68 134-205 1-93 (95)
104 KOG0912|consensus 98.8 7.7E-08 1.7E-12 90.2 11.5 223 12-272 10-255 (375)
105 PRK13728 conjugal transfer pro 98.7 5.1E-08 1.1E-12 87.2 9.3 85 138-230 73-173 (181)
106 PLN02919 haloacid dehalogenase 98.7 8.1E-08 1.7E-12 109.4 12.8 91 133-229 419-537 (1057)
107 cd02958 UAS UAS family; UAS is 98.6 2E-07 4.4E-12 78.0 9.1 91 131-228 14-111 (114)
108 PTZ00062 glutaredoxin; Provisi 98.6 4.8E-08 1E-12 89.6 5.7 153 15-206 17-178 (204)
109 cd02967 mauD Methylamine utili 98.6 1.3E-07 2.8E-12 79.0 7.8 31 133-163 20-50 (114)
110 KOG0910|consensus 98.6 2.1E-08 4.5E-13 85.5 1.8 80 10-98 56-148 (150)
111 PF13899 Thioredoxin_7: Thiore 98.6 6.9E-08 1.5E-12 75.7 4.6 68 128-202 11-81 (82)
112 cd02960 AGR Anterior Gradient 98.5 4.4E-07 9.4E-12 76.7 8.8 70 128-204 17-89 (130)
113 COG4232 Thiol:disulfide interc 98.5 2E-07 4.3E-12 96.0 7.5 103 120-227 457-567 (569)
114 cd03012 TlpA_like_DipZ_like Tl 98.5 3.4E-07 7.3E-12 78.1 7.5 75 133-213 22-124 (126)
115 cd03069 PDI_b_ERp57 PDIb famil 98.5 4.2E-07 9.1E-12 74.7 6.8 85 232-318 2-103 (104)
116 smart00594 UAS UAS domain. 98.5 1.2E-06 2.6E-11 74.2 9.7 94 125-224 14-121 (122)
117 PF07912 ERp29_N: ERp29, N-ter 98.4 2.7E-06 5.9E-11 69.7 10.5 108 117-229 4-120 (126)
118 cd02981 PDI_b_family Protein D 98.4 8.2E-07 1.8E-11 71.9 7.7 84 233-318 2-97 (97)
119 cd03007 PDI_a_ERp29_N PDIa fam 98.4 1.3E-07 2.8E-12 78.5 2.7 86 2-96 6-114 (116)
120 PF00085 Thioredoxin: Thioredo 98.4 3.5E-06 7.6E-11 68.6 10.6 100 323-430 1-102 (103)
121 cd03066 PDI_b_Calsequestrin_mi 98.4 1.4E-06 3.1E-11 71.2 7.9 86 232-319 2-101 (102)
122 PLN02399 phospholipid hydroper 98.4 1.5E-06 3.2E-11 81.8 8.8 90 133-228 98-234 (236)
123 PTZ00056 glutathione peroxidas 98.4 8.4E-07 1.8E-11 81.9 7.0 92 133-230 38-180 (199)
124 COG0526 TrxA Thiol-disulfide i 98.3 1.6E-06 3.4E-11 71.7 7.8 83 134-223 32-119 (127)
125 KOG1731|consensus 98.3 1.9E-07 4.1E-12 95.1 2.0 201 2-229 44-270 (606)
126 cd03003 PDI_a_ERdj5_N PDIa fam 98.3 7.9E-06 1.7E-10 66.6 11.3 99 321-427 1-100 (101)
127 PLN02412 probable glutathione 98.3 4.8E-06 1E-10 74.7 10.1 91 133-229 28-165 (167)
128 cd02999 PDI_a_ERp44_like PDIa 98.3 6.8E-08 1.5E-12 78.8 -1.7 36 13-53 16-51 (100)
129 TIGR02196 GlrX_YruB Glutaredox 98.3 1.6E-06 3.4E-11 65.9 6.0 68 138-224 2-73 (74)
130 PF08534 Redoxin: Redoxin; In 98.3 4.9E-06 1.1E-10 72.8 9.5 79 133-216 27-136 (146)
131 cd01659 TRX_superfamily Thiore 98.3 2.8E-06 6.2E-11 61.8 6.6 60 138-204 1-63 (69)
132 TIGR02661 MauD methylamine deh 98.2 4.7E-06 1E-10 76.4 8.6 85 133-226 73-177 (189)
133 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 1E-05 2.2E-10 66.3 9.9 100 321-428 1-104 (104)
134 cd03068 PDI_b_ERp72 PDIb famil 98.2 3.6E-06 7.8E-11 69.4 6.6 86 231-318 1-107 (107)
135 cd02981 PDI_b_family Protein D 98.2 7.6E-06 1.6E-10 66.2 8.3 93 121-226 3-96 (97)
136 cd02969 PRX_like1 Peroxiredoxi 98.2 1.6E-05 3.6E-10 71.5 10.4 97 133-234 24-158 (171)
137 TIGR02540 gpx7 putative glutat 98.1 9.4E-06 2E-10 71.7 8.6 89 133-227 21-152 (153)
138 TIGR02200 GlrX_actino Glutared 98.1 6.5E-06 1.4E-10 63.3 6.4 69 138-224 2-75 (77)
139 cd00340 GSH_Peroxidase Glutath 98.1 5E-06 1.1E-10 73.4 6.2 42 134-181 22-63 (152)
140 PF02114 Phosducin: Phosducin; 98.1 2E-05 4.4E-10 75.5 10.7 105 116-229 124-239 (265)
141 TIGR01626 ytfJ_HI0045 conserve 98.1 1.2E-05 2.7E-10 72.4 8.2 81 133-222 58-174 (184)
142 PF13728 TraF: F plasmid trans 98.1 1.8E-05 3.9E-10 73.7 9.1 82 134-223 120-213 (215)
143 KOG2603|consensus 98.0 2.4E-05 5.1E-10 74.3 9.3 119 115-233 38-171 (331)
144 PF13192 Thioredoxin_3: Thiore 98.0 2E-05 4.4E-10 60.6 7.2 73 139-225 3-76 (76)
145 cd03001 PDI_a_P5 PDIa family, 98.0 7E-05 1.5E-09 61.0 10.8 98 323-428 2-102 (103)
146 PTZ00443 Thioredoxin domain-co 98.0 6.4E-05 1.4E-09 70.3 11.5 106 321-433 30-140 (224)
147 TIGR01126 pdi_dom protein disu 98.0 7.2E-05 1.6E-09 60.7 10.0 98 326-431 1-101 (102)
148 cd02996 PDI_a_ERp44 PDIa famil 98.0 7.8E-05 1.7E-09 61.6 10.2 99 322-428 2-108 (108)
149 PF00578 AhpC-TSA: AhpC/TSA fa 97.9 5.1E-05 1.1E-09 64.1 8.4 70 133-207 24-121 (124)
150 cd03065 PDI_b_Calsequestrin_N 97.9 0.00011 2.4E-09 61.7 9.7 104 322-432 10-119 (120)
151 cd03002 PDI_a_MPD1_like PDI fa 97.9 0.00017 3.6E-09 59.5 10.5 98 323-428 2-108 (109)
152 PRK10996 thioredoxin 2; Provis 97.9 0.00018 3.9E-09 62.4 11.0 102 323-431 37-138 (139)
153 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00011 2.4E-09 61.0 9.2 106 119-229 1-109 (111)
154 KOG2501|consensus 97.8 3.9E-05 8.5E-10 66.3 6.3 71 134-207 33-129 (157)
155 cd03017 PRX_BCP Peroxiredoxin 97.8 7.7E-05 1.7E-09 64.6 8.1 81 134-220 23-135 (140)
156 cd02961 PDI_a_family Protein D 97.8 0.00021 4.6E-09 57.3 10.2 96 325-428 2-101 (101)
157 PTZ00256 glutathione peroxidas 97.8 0.00017 3.6E-09 65.8 10.4 43 134-181 40-83 (183)
158 cd03071 PDI_b'_NRX PDIb' famil 97.8 0.00017 3.7E-09 57.3 8.7 101 325-432 3-115 (116)
159 PHA02278 thioredoxin-like prot 97.8 2.9E-06 6.3E-11 69.4 -1.2 30 13-47 12-41 (103)
160 cd03074 PDI_b'_Calsequestrin_C 97.8 0.00031 6.8E-09 55.9 10.2 108 321-432 1-120 (120)
161 PRK15317 alkyl hydroperoxide r 97.8 0.0001 2.2E-09 78.6 9.9 97 121-229 102-199 (517)
162 PRK09381 trxA thioredoxin; Pro 97.8 0.00034 7.3E-09 57.8 10.9 103 322-432 4-108 (109)
163 cd03015 PRX_Typ2cys Peroxiredo 97.8 0.00018 3.8E-09 64.9 9.7 89 134-227 29-156 (173)
164 TIGR02180 GRX_euk Glutaredoxin 97.7 3.6E-05 7.8E-10 60.2 4.3 59 138-206 1-64 (84)
165 cd03006 PDI_a_EFP1_N PDIa fami 97.7 0.0003 6.4E-09 58.5 9.9 99 321-427 9-112 (113)
166 TIGR02739 TraF type-F conjugat 97.7 0.00016 3.4E-09 68.7 9.3 87 134-228 150-248 (256)
167 cd02998 PDI_a_ERp38 PDIa famil 97.7 0.00032 7E-09 57.1 10.1 98 323-428 2-105 (105)
168 cd03067 PDI_b_PDIR_N PDIb fami 97.7 0.00011 2.4E-09 57.8 6.6 95 124-226 9-110 (112)
169 cd02983 P5_C P5 family, C-term 97.7 0.00045 9.7E-09 59.0 11.1 110 118-233 3-120 (130)
170 cd02997 PDI_a_PDIR PDIa family 97.7 0.0003 6.5E-09 57.3 9.7 98 323-428 2-104 (104)
171 cd02970 PRX_like2 Peroxiredoxi 97.7 0.0002 4.3E-09 62.6 9.2 46 134-184 24-69 (149)
172 KOG1672|consensus 97.7 0.00013 2.8E-09 64.6 7.6 90 116-213 65-155 (211)
173 cd02991 UAS_ETEA UAS family, E 97.7 0.00022 4.7E-09 59.6 8.7 90 132-228 15-113 (116)
174 COG3118 Thioredoxin domain-con 97.7 0.00039 8.5E-09 66.2 10.9 108 320-434 22-132 (304)
175 TIGR03143 AhpF_homolog putativ 97.7 0.00017 3.7E-09 77.5 9.6 92 121-224 462-554 (555)
176 TIGR03137 AhpC peroxiredoxin. 97.7 0.00026 5.6E-09 64.7 9.5 88 134-226 31-154 (187)
177 PRK09437 bcp thioredoxin-depen 97.7 0.00021 4.6E-09 63.1 8.6 87 133-225 29-153 (154)
178 cd03005 PDI_a_ERp46 PDIa famil 97.7 0.00037 8E-09 56.6 9.4 97 323-428 2-102 (102)
179 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00052 1.1E-08 55.8 10.2 97 323-428 2-104 (104)
180 cd02963 TRX_DnaJ TRX domain, D 97.6 0.00031 6.6E-09 58.4 8.4 98 326-430 9-110 (111)
181 cd02993 PDI_a_APS_reductase PD 97.6 0.00062 1.3E-08 56.3 10.2 99 323-428 3-109 (109)
182 KOG3425|consensus 97.6 0.00044 9.4E-09 56.4 8.1 73 125-203 13-104 (128)
183 cd02994 PDI_a_TMX PDIa family, 97.6 0.001 2.2E-08 54.0 10.5 97 323-429 3-100 (101)
184 PF03190 Thioredox_DsbH: Prote 97.5 0.00015 3.3E-09 63.6 5.8 79 122-206 25-115 (163)
185 PRK10606 btuE putative glutath 97.5 0.00049 1.1E-08 62.4 9.2 120 133-268 24-177 (183)
186 PRK11200 grxA glutaredoxin 1; 97.5 0.00037 8E-09 54.8 7.5 77 137-229 2-84 (85)
187 PF06110 DUF953: Eukaryotic pr 97.5 0.0004 8.8E-09 57.9 7.9 75 125-205 6-100 (119)
188 cd02985 TRX_CDSP32 TRX family, 97.5 1.8E-05 3.8E-10 64.9 -0.3 31 14-49 14-44 (103)
189 TIGR01068 thioredoxin thioredo 97.5 0.0011 2.4E-08 53.3 10.3 97 327-431 2-100 (101)
190 PRK00522 tpx lipid hydroperoxi 97.5 0.00049 1.1E-08 61.7 8.8 85 133-225 43-166 (167)
191 PRK13703 conjugal pilus assemb 97.5 0.0005 1.1E-08 64.9 9.1 86 134-228 143-241 (248)
192 cd02956 ybbN ybbN protein fami 97.5 0.0012 2.6E-08 53.0 10.1 92 330-429 2-96 (96)
193 cd02992 PDI_a_QSOX PDIa family 97.5 8.5E-06 1.8E-10 68.1 -2.8 41 5-50 9-49 (114)
194 cd02950 TxlA TRX-like protein 97.5 0.0023 4.9E-08 55.7 12.3 98 330-435 12-113 (142)
195 cd02976 NrdH NrdH-redoxin (Nrd 97.4 0.00037 8.1E-09 52.5 6.0 67 138-223 2-72 (73)
196 TIGR03140 AhpF alkyl hydropero 97.4 0.00074 1.6E-08 71.9 10.3 96 121-228 103-199 (515)
197 TIGR03143 AhpF_homolog putativ 97.4 0.0033 7.2E-08 67.6 15.2 168 134-315 366-554 (555)
198 PRK15000 peroxidase; Provision 97.4 0.0011 2.4E-08 61.2 9.7 88 133-226 33-160 (200)
199 PRK13190 putative peroxiredoxi 97.4 0.001 2.2E-08 61.6 9.2 90 134-228 27-154 (202)
200 cd02965 HyaE HyaE family; HyaE 97.4 0.0013 2.8E-08 54.1 8.7 82 323-407 12-94 (111)
201 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.00089 1.9E-08 55.5 7.8 99 121-227 3-110 (111)
202 KOG3414|consensus 97.3 0.0015 3.3E-08 53.6 8.6 81 125-211 12-94 (142)
203 cd02989 Phd_like_TxnDC9 Phosdu 97.3 0.0045 9.8E-08 51.5 11.8 104 320-428 3-112 (113)
204 cd03018 PRX_AhpE_like Peroxire 97.3 0.0013 2.9E-08 57.4 9.1 44 133-181 27-71 (149)
205 PRK10382 alkyl hydroperoxide r 97.3 0.0015 3.3E-08 59.5 9.7 89 134-227 31-155 (187)
206 cd02968 SCO SCO (an acronym fo 97.3 0.0006 1.3E-08 59.0 6.8 48 133-182 21-69 (142)
207 COG2143 Thioredoxin-related pr 97.3 0.0019 4E-08 55.3 8.9 89 130-225 38-146 (182)
208 cd03016 PRX_1cys Peroxiredoxin 97.3 0.0015 3.3E-08 60.5 9.3 86 136-227 28-153 (203)
209 PRK10877 protein disulfide iso 97.3 0.00055 1.2E-08 64.7 6.3 89 134-227 107-230 (232)
210 KOG0907|consensus 97.3 4.5E-05 9.7E-10 62.5 -1.0 33 14-51 20-52 (106)
211 PF14595 Thioredoxin_9: Thiore 97.2 0.00052 1.1E-08 58.5 5.2 67 134-207 41-111 (129)
212 cd03000 PDI_a_TMX3 PDIa family 97.2 0.0033 7.2E-08 51.3 9.9 94 329-431 7-103 (104)
213 cd02959 ERp19 Endoplasmic reti 97.2 0.00011 2.3E-09 61.7 0.5 32 13-49 17-48 (117)
214 cd02971 PRX_family Peroxiredox 97.2 0.0014 3E-08 56.6 7.3 44 133-181 21-65 (140)
215 PF00462 Glutaredoxin: Glutare 97.1 0.001 2.3E-08 48.4 5.2 54 138-205 1-58 (60)
216 cd02949 TRX_NTR TRX domain, no 97.1 0.0041 9E-08 50.1 9.0 88 333-428 8-96 (97)
217 cd02967 mauD Methylamine utili 97.1 0.00017 3.7E-09 60.0 0.7 40 3-47 9-48 (114)
218 cd02948 TRX_NDPK TRX domain, T 97.1 0.0054 1.2E-07 50.0 9.7 95 326-430 5-101 (102)
219 cd02953 DsbDgamma DsbD gamma f 97.0 0.0068 1.5E-07 49.4 9.7 92 329-428 2-103 (104)
220 KOG0911|consensus 97.0 0.00044 9.5E-09 63.0 2.7 77 131-215 14-90 (227)
221 cd02988 Phd_like_VIAF Phosduci 97.0 0.00027 5.8E-09 64.7 1.3 30 16-50 103-132 (192)
222 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0024 5.1E-08 50.3 6.4 76 138-229 2-83 (86)
223 cd02957 Phd_like Phosducin (Ph 97.0 0.0055 1.2E-07 50.9 9.1 80 321-406 4-86 (113)
224 PRK13599 putative peroxiredoxi 97.0 0.0054 1.2E-07 57.3 9.8 87 136-227 31-155 (215)
225 PRK13189 peroxiredoxin; Provis 97.0 0.0047 1E-07 58.0 9.5 89 134-227 35-162 (222)
226 PF02966 DIM1: Mitosis protein 97.0 0.013 2.8E-07 49.0 10.8 81 124-211 8-91 (133)
227 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0031 6.8E-08 48.7 6.6 58 135-206 7-67 (79)
228 cd02986 DLP Dim1 family, Dim1- 96.9 0.00019 4.2E-09 59.0 -0.3 32 14-50 13-44 (114)
229 cd02947 TRX_family TRX family; 96.9 0.0081 1.8E-07 46.9 9.2 90 330-428 2-92 (93)
230 cd03020 DsbA_DsbC_DsbG DsbA fa 96.9 0.00066 1.4E-08 62.6 2.9 86 134-224 77-197 (197)
231 PTZ00137 2-Cys peroxiredoxin; 96.9 0.0075 1.6E-07 57.7 9.9 89 134-227 98-224 (261)
232 cd03069 PDI_b_ERp57 PDIb famil 96.8 0.006 1.3E-07 49.9 8.0 91 123-227 7-103 (104)
233 KOG0908|consensus 96.8 0.00026 5.6E-09 65.2 -0.1 34 13-51 19-52 (288)
234 cd02984 TRX_PICOT TRX domain, 96.8 0.012 2.7E-07 47.0 9.7 76 328-407 2-79 (97)
235 cd03419 GRX_GRXh_1_2_like Glut 96.8 0.0029 6.2E-08 49.1 5.5 57 138-206 2-63 (82)
236 cd02954 DIM1 Dim1 family; Dim1 96.8 0.012 2.6E-07 48.8 9.3 74 329-406 3-78 (114)
237 TIGR00424 APS_reduc 5'-adenyly 96.8 0.014 3.1E-07 60.3 11.9 105 321-431 351-462 (463)
238 PRK13191 putative peroxiredoxi 96.8 0.0098 2.1E-07 55.5 9.8 87 136-227 36-160 (215)
239 cd03014 PRX_Atyp2cys Peroxired 96.8 0.0023 5E-08 55.5 5.3 42 134-182 26-68 (143)
240 cd02975 PfPDO_like_N Pyrococcu 96.8 0.012 2.6E-07 49.0 9.3 90 335-433 19-111 (113)
241 cd02962 TMX2 TMX2 family; comp 96.7 0.012 2.6E-07 51.6 9.4 83 322-406 29-118 (152)
242 cd03066 PDI_b_Calsequestrin_mi 96.7 0.013 2.8E-07 47.7 9.1 96 119-227 2-100 (102)
243 PLN02309 5'-adenylylsulfate re 96.7 0.017 3.6E-07 59.8 11.8 104 321-431 345-456 (457)
244 cd02066 GRX_family Glutaredoxi 96.7 0.0029 6.3E-08 47.2 4.7 56 138-207 2-61 (72)
245 PF07449 HyaE: Hydrogenase-1 e 96.6 0.0035 7.5E-08 51.1 4.8 92 117-216 9-103 (107)
246 PTZ00253 tryparedoxin peroxida 96.6 0.012 2.7E-07 54.2 9.1 89 134-227 36-163 (199)
247 PHA03050 glutaredoxin; Provisi 96.6 0.0063 1.4E-07 50.1 6.2 67 128-207 7-80 (108)
248 TIGR02189 GlrX-like_plant Glut 96.5 0.0052 1.1E-07 49.8 5.5 62 130-207 4-72 (99)
249 PF11009 DUF2847: Protein of u 96.5 0.015 3.4E-07 47.1 7.8 91 124-220 7-104 (105)
250 PTZ00051 thioredoxin; Provisio 96.5 0.021 4.6E-07 45.8 8.8 78 324-406 3-81 (98)
251 cd02951 SoxW SoxW family; SoxW 96.5 0.024 5.3E-07 47.8 9.6 100 330-435 5-122 (125)
252 cd03029 GRX_hybridPRX5 Glutare 96.4 0.016 3.5E-07 43.7 7.0 66 138-224 3-71 (72)
253 cd02952 TRP14_like Human TRX-r 96.3 0.037 8.1E-07 46.3 9.1 94 328-428 9-118 (119)
254 TIGR02194 GlrX_NrdH Glutaredox 96.3 0.0058 1.3E-07 46.3 4.0 66 139-222 2-70 (72)
255 PHA02125 thioredoxin-like prot 96.2 0.00076 1.6E-08 51.6 -1.1 21 19-44 2-22 (75)
256 TIGR02181 GRX_bact Glutaredoxi 96.2 0.0051 1.1E-07 47.4 3.5 55 138-206 1-59 (79)
257 PRK10329 glutaredoxin-like pro 96.2 0.026 5.6E-07 43.8 7.4 72 138-228 3-77 (81)
258 TIGR00412 redox_disulf_2 small 96.2 0.00085 1.8E-08 51.5 -1.1 24 19-47 2-25 (76)
259 cd02987 Phd_like_Phd Phosducin 96.2 0.065 1.4E-06 48.3 10.9 106 319-430 60-173 (175)
260 cd03027 GRX_DEP Glutaredoxin ( 96.1 0.0093 2E-07 45.2 4.6 55 138-206 3-61 (73)
261 cd02964 TryX_like_family Trypa 96.1 0.0015 3.3E-08 56.0 0.1 31 14-49 16-46 (132)
262 TIGR02738 TrbB type-F conjugat 96.1 0.0011 2.4E-08 58.3 -1.0 33 10-47 45-77 (153)
263 KOG2640|consensus 96.0 0.0025 5.4E-08 60.9 1.2 93 128-229 68-163 (319)
264 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.01 2.2E-07 45.1 4.5 55 138-206 2-61 (75)
265 PLN00410 U5 snRNP protein, DIM 95.9 0.11 2.3E-06 44.9 10.7 104 328-434 11-122 (142)
266 PF01216 Calsequestrin: Calseq 95.9 0.069 1.5E-06 52.1 10.4 103 323-434 36-146 (383)
267 PF05768 DUF836: Glutaredoxin- 95.9 0.011 2.4E-07 45.9 4.3 79 138-225 2-81 (81)
268 PF13905 Thioredoxin_8: Thiore 95.8 0.0022 4.8E-08 51.3 -0.0 31 15-50 1-31 (95)
269 TIGR00365 monothiol glutaredox 95.8 0.021 4.5E-07 46.0 5.6 66 127-206 5-77 (97)
270 cd03009 TryX_like_TryX_NRX Try 95.8 0.0026 5.6E-08 54.3 0.1 38 5-48 9-46 (131)
271 cd03008 TryX_like_RdCVF Trypar 95.8 0.0027 5.9E-08 55.2 0.2 28 14-46 24-51 (146)
272 cd03010 TlpA_like_DsbE TlpA-li 95.7 0.0027 5.9E-08 53.9 0.1 27 14-45 24-50 (127)
273 TIGR01295 PedC_BrcD bacterioci 95.7 0.099 2.1E-06 44.1 9.4 104 321-429 6-121 (122)
274 cd02972 DsbA_family DsbA famil 95.5 0.036 7.7E-07 43.8 5.8 59 138-202 1-91 (98)
275 PRK14018 trifunctional thiored 95.5 0.0043 9.4E-08 65.0 0.3 35 10-49 51-85 (521)
276 KOG3170|consensus 95.4 0.15 3.2E-06 45.8 9.7 109 117-236 91-208 (240)
277 TIGR00411 redox_disulf_1 small 95.4 0.14 3.1E-06 39.3 8.7 79 342-431 3-81 (82)
278 cd02955 SSP411 TRX domain, SSP 95.3 0.029 6.3E-07 47.4 4.9 28 12-44 12-40 (124)
279 PRK00293 dipZ thiol:disulfide 95.3 0.017 3.7E-07 62.1 4.4 35 14-53 473-507 (571)
280 PF13899 Thioredoxin_7: Thiore 95.3 0.009 2E-07 46.4 1.6 34 13-51 15-48 (82)
281 PRK15412 thiol:disulfide inter 95.0 0.0056 1.2E-07 55.8 -0.4 28 13-45 66-93 (185)
282 PRK11509 hydrogenase-1 operon 95.0 0.51 1.1E-05 40.2 11.3 112 311-435 10-127 (132)
283 cd03028 GRX_PICOT_like Glutare 94.8 0.064 1.4E-06 42.5 5.4 49 144-206 21-73 (90)
284 TIGR00385 dsbE periplasmic pro 94.8 0.0071 1.5E-07 54.5 -0.2 27 13-44 61-87 (173)
285 PRK10638 glutaredoxin 3; Provi 94.8 0.049 1.1E-06 42.4 4.6 55 138-206 4-62 (83)
286 TIGR02740 TraF-like TraF-like 94.8 0.0065 1.4E-07 58.8 -0.6 31 14-49 165-195 (271)
287 cd03068 PDI_b_ERp72 PDIb famil 94.7 0.2 4.2E-06 41.2 8.2 95 120-227 3-107 (107)
288 cd02960 AGR Anterior Gradient 94.7 0.014 3.1E-07 49.4 1.4 36 13-53 21-56 (130)
289 KOG3171|consensus 94.7 0.15 3.2E-06 46.2 7.7 110 116-234 137-257 (273)
290 PRK11657 dsbG disulfide isomer 94.6 0.14 3.1E-06 49.0 8.1 82 134-225 117-249 (251)
291 COG0695 GrxC Glutaredoxin and 94.6 0.064 1.4E-06 41.5 4.6 54 138-205 3-62 (80)
292 cd02966 TlpA_like_family TlpA- 94.4 0.013 2.8E-07 47.9 0.4 38 5-48 10-47 (116)
293 cd03011 TlpA_like_ScsD_MtbDsbE 94.4 0.0063 1.4E-07 51.2 -1.5 36 5-46 11-46 (123)
294 TIGR02661 MauD methylamine deh 94.3 0.013 2.9E-07 53.5 0.3 37 4-45 62-99 (189)
295 PF00837 T4_deiodinase: Iodoth 94.3 0.57 1.2E-05 43.8 10.9 51 115-165 80-133 (237)
296 cd03023 DsbA_Com1_like DsbA fa 94.2 0.099 2.2E-06 45.4 5.7 30 134-163 5-34 (154)
297 COG0526 TrxA Thiol-disulfide i 93.5 0.02 4.3E-07 46.5 -0.1 31 15-50 32-62 (127)
298 PF08534 Redoxin: Redoxin; In 93.5 0.012 2.7E-07 51.1 -1.5 40 6-51 20-60 (146)
299 PF13098 Thioredoxin_2: Thiore 93.4 0.019 4.2E-07 47.3 -0.4 31 13-48 3-33 (112)
300 PRK10824 glutaredoxin-4; Provi 93.3 0.13 2.8E-06 42.7 4.4 65 127-207 8-81 (115)
301 PRK13728 conjugal transfer pro 93.3 0.02 4.3E-07 51.5 -0.5 25 19-48 73-97 (181)
302 KOG0913|consensus 93.1 0.02 4.3E-07 52.7 -0.8 32 14-51 39-70 (248)
303 cd03012 TlpA_like_DipZ_like Tl 93.0 0.022 4.8E-07 48.2 -0.6 36 6-47 15-50 (126)
304 COG4232 Thiol:disulfide interc 93.0 0.22 4.8E-06 52.2 6.5 22 16-42 475-496 (569)
305 PTZ00056 glutathione peroxidas 92.8 0.1 2.2E-06 48.2 3.3 40 5-50 30-69 (199)
306 cd00340 GSH_Peroxidase Glutath 92.4 0.023 5E-07 49.9 -1.3 30 14-49 21-50 (152)
307 PRK03147 thiol-disulfide oxido 92.3 0.03 6.5E-07 50.1 -0.7 37 5-47 52-88 (173)
308 TIGR02540 gpx7 putative glutat 92.3 0.14 3.1E-06 44.9 3.6 41 3-49 11-51 (153)
309 PF00578 AhpC-TSA: AhpC/TSA fa 92.1 0.023 5E-07 47.6 -1.7 43 2-50 13-56 (124)
310 PRK12759 bifunctional gluaredo 92.1 0.26 5.5E-06 50.8 5.6 54 138-205 4-69 (410)
311 PLN02919 haloacid dehalogenase 92.0 0.038 8.2E-07 63.8 -0.6 40 6-50 411-450 (1057)
312 PRK15317 alkyl hydroperoxide r 91.9 5.6 0.00012 42.4 15.8 158 135-318 20-197 (517)
313 cd03067 PDI_b_PDIR_N PDIb fami 91.4 1.6 3.4E-05 34.9 7.9 97 329-430 10-110 (112)
314 cd02969 PRX_like1 Peroxiredoxi 90.7 0.047 1E-06 48.9 -1.2 40 5-49 15-54 (171)
315 cd03019 DsbA_DsbA DsbA family, 90.7 0.38 8.3E-06 43.0 4.8 41 133-179 14-54 (178)
316 KOG0911|consensus 89.9 0.14 3E-06 47.0 1.2 51 143-205 151-203 (227)
317 cd02968 SCO SCO (an acronym fo 89.6 0.069 1.5E-06 46.0 -1.1 39 6-50 14-53 (142)
318 cd02974 AhpF_NTD_N Alkyl hydro 89.4 4.1 9E-05 32.5 9.1 74 134-226 19-92 (94)
319 PLN02412 probable glutathione 89.0 0.12 2.5E-06 46.3 -0.1 33 14-51 28-60 (167)
320 PLN02399 phospholipid hydroper 88.2 0.14 3.1E-06 48.3 -0.0 32 14-50 98-129 (236)
321 cd02973 TRX_GRX_like Thioredox 87.5 2.5 5.4E-05 30.8 6.4 58 342-404 3-60 (67)
322 smart00594 UAS UAS domain. 87.4 5.4 0.00012 33.4 9.2 103 321-428 9-121 (122)
323 COG1331 Highly conserved prote 87.4 1.8 3.9E-05 46.5 7.4 80 121-206 30-121 (667)
324 PRK10606 btuE putative glutath 87.3 0.29 6.4E-06 44.3 1.4 38 4-48 15-52 (183)
325 PF13462 Thioredoxin_4: Thiore 86.8 2.1 4.6E-05 37.4 6.7 45 134-182 12-56 (162)
326 cd02958 UAS UAS family; UAS is 86.3 5.5 0.00012 32.7 8.6 90 335-432 14-111 (114)
327 cd03013 PRX5_like Peroxiredoxi 85.7 1.4 3E-05 38.7 4.9 60 128-192 24-88 (155)
328 cd03026 AhpF_NTD_C TRX-GRX-lik 85.5 4.3 9.2E-05 32.0 7.1 62 337-403 10-72 (89)
329 KOG1752|consensus 85.2 2 4.2E-05 35.0 5.0 66 127-206 7-77 (104)
330 cd03018 PRX_AhpE_like Peroxire 85.2 0.2 4.2E-06 43.5 -0.9 38 5-47 18-56 (149)
331 cd03014 PRX_Atyp2cys Peroxired 84.2 0.17 3.7E-06 43.6 -1.6 35 6-46 18-53 (143)
332 cd03023 DsbA_Com1_like DsbA fa 84.0 0.26 5.6E-06 42.8 -0.7 35 184-224 119-153 (154)
333 PRK10954 periplasmic protein d 82.9 1.6 3.4E-05 40.4 4.1 40 134-179 37-79 (207)
334 TIGR03140 AhpF alkyl hydropero 82.7 14 0.0003 39.4 11.8 159 135-318 20-198 (515)
335 PF13728 TraF: F plasmid trans 81.8 6.2 0.00013 36.8 7.6 82 339-425 121-211 (215)
336 PF02114 Phosducin: Phosducin; 81.7 10 0.00022 36.5 9.3 110 319-436 123-240 (265)
337 PTZ00256 glutathione peroxidas 81.6 0.32 7E-06 44.1 -1.0 39 189-228 139-181 (183)
338 cd02970 PRX_like2 Peroxiredoxi 81.6 0.29 6.3E-06 42.3 -1.2 31 14-49 22-53 (149)
339 PRK13703 conjugal pilus assemb 81.5 10 0.00022 36.1 9.0 92 340-435 145-244 (248)
340 PF13417 GST_N_3: Glutathione 81.3 17 0.00037 27.2 8.7 73 140-231 1-74 (75)
341 TIGR03137 AhpC peroxiredoxin. 81.2 0.5 1.1E-05 43.1 0.1 32 14-50 30-62 (187)
342 TIGR02196 GlrX_YruB Glutaredox 81.0 0.38 8.3E-06 35.6 -0.6 21 19-44 2-22 (74)
343 TIGR02739 TraF type-F conjugat 81.0 11 0.00024 36.0 9.2 90 340-434 152-250 (256)
344 cd03041 GST_N_2GST_N GST_N fam 80.6 8.9 0.00019 28.9 7.0 71 138-227 2-76 (77)
345 TIGR02200 GlrX_actino Glutared 80.1 0.4 8.7E-06 36.1 -0.8 21 19-44 2-22 (77)
346 cd03015 PRX_Typ2cys Peroxiredo 79.9 0.59 1.3E-05 41.9 0.1 39 6-50 21-60 (173)
347 cd02971 PRX_family Peroxiredox 79.4 0.49 1.1E-05 40.4 -0.6 39 5-49 13-52 (140)
348 TIGR02180 GRX_euk Glutaredoxin 79.4 0.4 8.8E-06 36.8 -1.0 21 20-45 2-22 (84)
349 cd03031 GRX_GRX_like Glutaredo 79.0 3.6 7.9E-05 35.8 4.7 54 138-205 2-69 (147)
350 cd03019 DsbA_DsbA DsbA family, 78.7 0.5 1.1E-05 42.2 -0.7 27 14-45 14-40 (178)
351 PRK00522 tpx lipid hydroperoxi 78.1 0.38 8.1E-06 43.0 -1.7 37 4-45 34-70 (167)
352 TIGR01626 ytfJ_HI0045 conserve 78.0 0.56 1.2E-05 42.4 -0.6 26 15-45 59-84 (184)
353 cd01659 TRX_superfamily Thiore 76.5 0.54 1.2E-05 32.9 -1.0 22 19-45 1-22 (69)
354 cd03017 PRX_BCP Peroxiredoxin 76.5 0.55 1.2E-05 40.1 -1.1 39 5-49 14-53 (140)
355 PF13462 Thioredoxin_4: Thiore 76.2 0.89 1.9E-05 39.8 0.2 36 185-226 127-162 (162)
356 KOG0914|consensus 75.8 0.8 1.7E-05 41.8 -0.2 33 14-51 143-175 (265)
357 KOG2501|consensus 75.3 2 4.4E-05 37.5 2.1 32 14-53 32-63 (157)
358 COG1225 Bcp Peroxiredoxin [Pos 74.2 32 0.0007 30.2 9.3 88 134-227 30-155 (157)
359 cd02977 ArsC_family Arsenate R 73.5 3.9 8.5E-05 33.1 3.4 34 139-184 2-35 (105)
360 cd03060 GST_N_Omega_like GST_N 72.0 6.8 0.00015 29.0 4.1 51 139-199 2-53 (71)
361 PF07912 ERp29_N: ERp29, N-ter 70.7 63 0.0014 27.1 12.0 104 323-430 6-117 (126)
362 cd03040 GST_N_mPGES2 GST_N fam 70.4 24 0.00052 26.3 7.0 72 138-229 2-77 (77)
363 PRK10954 periplasmic protein d 70.0 1.6 3.5E-05 40.3 0.3 24 14-42 36-59 (207)
364 cd03037 GST_N_GRX2 GST_N famil 69.4 15 0.00032 27.0 5.5 20 140-159 3-22 (71)
365 PRK15000 peroxidase; Provision 69.4 1.9 4.1E-05 39.7 0.6 31 14-49 33-64 (200)
366 cd03074 PDI_b'_Calsequestrin_C 67.5 67 0.0015 26.2 9.3 104 120-227 4-119 (120)
367 COG3019 Predicted metal-bindin 67.4 6.4 0.00014 33.5 3.3 75 136-228 26-104 (149)
368 COG0278 Glutaredoxin-related p 67.2 16 0.00035 29.3 5.2 69 127-206 8-81 (105)
369 cd03020 DsbA_DsbC_DsbG DsbA fa 66.8 2.3 4.9E-05 39.0 0.6 27 13-44 75-101 (197)
370 cd03059 GST_N_SspA GST_N famil 66.2 16 0.00034 26.9 5.1 70 139-227 2-72 (73)
371 PF05768 DUF836: Glutaredoxin- 65.7 21 0.00046 27.3 5.8 75 342-429 2-81 (81)
372 cd02976 NrdH NrdH-redoxin (Nrd 65.5 1.5 3.3E-05 32.2 -0.7 21 19-44 2-22 (73)
373 cd00570 GST_N_family Glutathio 63.5 15 0.00032 26.1 4.5 51 140-200 3-55 (71)
374 PRK10382 alkyl hydroperoxide r 62.8 2.4 5.1E-05 38.6 -0.1 32 14-50 30-62 (187)
375 cd03036 ArsC_like Arsenate Red 62.4 10 0.00022 31.2 3.6 77 139-227 2-87 (111)
376 cd03045 GST_N_Delta_Epsilon GS 62.0 32 0.00068 25.3 6.1 68 139-225 2-73 (74)
377 PRK01655 spxA transcriptional 61.1 12 0.00025 31.9 3.9 35 138-184 2-36 (131)
378 KOG2603|consensus 60.3 1E+02 0.0022 30.2 10.3 117 310-433 29-167 (331)
379 cd03035 ArsC_Yffb Arsenate Red 59.2 12 0.00027 30.3 3.6 34 139-184 2-35 (105)
380 PF13743 Thioredoxin_5: Thiore 59.0 15 0.00033 32.9 4.5 36 140-181 2-37 (176)
381 cd03419 GRX_GRXh_1_2_like Glut 58.9 2.6 5.7E-05 32.1 -0.5 21 20-45 3-23 (82)
382 KOG1672|consensus 58.8 74 0.0016 28.9 8.5 120 309-438 55-182 (211)
383 TIGR01617 arsC_related transcr 57.4 14 0.0003 30.6 3.7 34 139-184 2-35 (117)
384 cd02978 KaiB_like KaiB-like fa 56.8 32 0.00068 25.9 5.0 60 137-201 3-62 (72)
385 PRK09437 bcp thioredoxin-depen 56.2 3.5 7.7E-05 35.9 -0.1 39 5-49 21-60 (154)
386 TIGR00762 DegV EDD domain prot 56.2 31 0.00068 33.3 6.5 149 180-339 9-169 (275)
387 cd02972 DsbA_family DsbA famil 56.1 2.1 4.5E-05 33.3 -1.5 23 19-46 1-23 (98)
388 COG3531 Predicted protein-disu 55.7 13 0.00028 33.7 3.3 44 184-228 164-209 (212)
389 PF09822 ABC_transp_aux: ABC-t 53.3 1.9E+02 0.0041 27.7 11.5 113 115-229 5-143 (271)
390 PRK12559 transcriptional regul 50.6 24 0.00052 30.0 4.1 35 138-184 2-36 (131)
391 cd03032 ArsC_Spx Arsenate Redu 50.1 27 0.00059 28.8 4.3 34 138-183 2-35 (115)
392 cd03051 GST_N_GTT2_like GST_N 49.3 18 0.00039 26.5 2.8 52 139-200 2-57 (74)
393 PRK13599 putative peroxiredoxi 49.0 5.7 0.00012 37.0 0.0 32 14-50 27-59 (215)
394 PTZ00253 tryparedoxin peroxida 48.2 6.3 0.00014 36.1 0.2 31 14-49 35-66 (199)
395 PF02645 DegV: Uncharacterised 47.5 16 0.00034 35.5 2.9 145 183-338 13-170 (280)
396 TIGR02742 TrbC_Ftype type-F co 47.3 26 0.00056 29.8 3.7 45 183-228 60-115 (130)
397 PRK11200 grxA glutaredoxin 1; 46.1 5.2 0.00011 30.9 -0.6 23 19-46 3-25 (85)
398 PRK09301 circadian clock prote 45.2 53 0.0012 26.6 5.0 75 135-216 6-80 (103)
399 PRK13190 putative peroxiredoxi 44.8 7.6 0.00017 35.7 0.1 31 14-49 26-57 (202)
400 TIGR02654 circ_KaiB circadian 44.1 61 0.0013 25.4 5.0 74 136-216 4-77 (87)
401 PF04592 SelP_N: Selenoprotein 43.6 49 0.0011 31.0 5.1 45 134-180 26-70 (238)
402 PF07449 HyaE: Hydrogenase-1 e 42.2 98 0.0021 25.3 6.2 80 323-406 11-92 (107)
403 cd02991 UAS_ETEA UAS family, E 42.1 2E+02 0.0043 23.8 8.4 95 335-433 14-114 (116)
404 COG0386 BtuE Glutathione perox 42.0 2.1E+02 0.0046 25.0 8.4 58 119-182 10-67 (162)
405 cd02066 GRX_family Glutaredoxi 40.7 6.8 0.00015 28.3 -0.7 20 20-44 3-22 (72)
406 PF09673 TrbC_Ftype: Type-F co 39.7 57 0.0012 26.9 4.6 45 151-203 36-80 (113)
407 PRK13191 putative peroxiredoxi 39.5 9.6 0.00021 35.5 -0.1 32 14-50 32-64 (215)
408 PRK10877 protein disulfide iso 38.6 8.6 0.00019 36.3 -0.5 27 13-44 105-131 (232)
409 cd03016 PRX_1cys Peroxiredoxin 38.5 11 0.00024 34.7 0.2 31 16-51 26-57 (203)
410 cd03056 GST_N_4 GST_N family, 37.4 1.3E+02 0.0028 21.6 6.0 21 139-159 2-22 (73)
411 PTZ00137 2-Cys peroxiredoxin; 37.3 10 0.00023 36.4 -0.2 32 14-50 97-129 (261)
412 PF13743 Thioredoxin_5: Thiore 37.3 16 0.00035 32.8 1.0 36 184-219 137-173 (176)
413 KOG3170|consensus 36.8 2.7E+02 0.0059 25.5 8.5 86 229-317 90-199 (240)
414 PHA03075 glutaredoxin-like pro 36.3 58 0.0013 26.9 3.9 28 135-162 2-29 (123)
415 PF02630 SCO1-SenC: SCO1/SenC; 36.2 1.3E+02 0.0028 26.8 6.7 47 133-182 51-98 (174)
416 PRK13344 spxA transcriptional 35.9 59 0.0013 27.6 4.3 35 138-184 2-36 (132)
417 PF04551 GcpE: GcpE protein; 35.5 65 0.0014 32.2 4.9 88 134-227 264-358 (359)
418 PF13778 DUF4174: Domain of un 35.2 2.3E+02 0.0049 23.5 7.6 92 128-226 4-110 (118)
419 PF03190 Thioredox_DsbH: Prote 34.1 26 0.00055 31.1 1.7 35 13-53 35-70 (163)
420 PF00255 GSHPx: Glutathione pe 33.8 1E+02 0.0022 25.2 5.1 44 133-182 20-63 (108)
421 KOG2640|consensus 33.4 20 0.00044 34.9 1.0 118 13-162 74-202 (319)
422 KOG2792|consensus 33.1 2E+02 0.0044 27.5 7.5 100 120-229 130-276 (280)
423 COG4545 Glutaredoxin-related p 33.1 27 0.00058 26.4 1.4 55 139-206 5-75 (85)
424 cd03054 GST_N_Metaxin GST_N fa 31.4 2E+02 0.0044 20.8 6.7 59 143-226 13-71 (72)
425 COG4012 Uncharacterized protei 31.3 3.5E+02 0.0075 26.1 8.6 105 328-439 163-280 (342)
426 COG2093 DNA-directed RNA polym 31.3 17 0.00038 26.2 0.2 15 29-43 4-18 (64)
427 PF01323 DSBA: DSBA-like thior 31.2 44 0.00096 29.9 3.0 36 184-224 157-192 (193)
428 COG0821 gcpE 1-hydroxy-2-methy 29.7 1.2E+02 0.0026 30.1 5.6 84 145-229 263-352 (361)
429 PRK13189 peroxiredoxin; Provis 29.1 19 0.00041 33.7 0.1 32 14-50 34-66 (222)
430 PF11009 DUF2847: Protein of u 28.1 3.3E+02 0.0072 22.2 7.3 79 327-407 6-89 (105)
431 KOG2507|consensus 27.5 3.8E+02 0.0083 27.5 8.7 91 132-228 16-111 (506)
432 COG3634 AhpF Alkyl hydroperoxi 27.4 1.3E+02 0.0029 30.1 5.5 92 123-226 104-196 (520)
433 KOG1422|consensus 27.1 1.6E+02 0.0034 27.3 5.5 70 145-233 20-90 (221)
434 cd00652 TBP_TLF TATA box bindi 26.9 4.6E+02 0.0099 23.4 8.9 89 196-297 48-137 (174)
435 cd03025 DsbA_FrnE_like DsbA fa 26.7 87 0.0019 28.0 4.1 26 138-163 3-28 (193)
436 COG1651 DsbG Protein-disulfide 26.6 18 0.00039 34.1 -0.5 39 183-227 204-242 (244)
437 COG1307 DegV Uncharacterized p 26.6 2E+02 0.0043 28.0 6.7 149 179-338 10-171 (282)
438 cd03055 GST_N_Omega GST_N fami 26.0 2E+02 0.0043 22.1 5.5 53 138-200 19-72 (89)
439 PRK11657 dsbG disulfide isomer 25.6 22 0.00048 33.9 -0.1 27 13-44 115-141 (251)
440 PF10281 Ish1: Putative stress 24.8 1.1E+02 0.0023 19.7 3.0 29 305-333 3-32 (38)
441 cd04516 TBP_eukaryotes eukaryo 24.3 5.2E+02 0.011 23.1 8.9 89 196-297 48-136 (174)
442 COG1651 DsbG Protein-disulfide 23.7 1.1E+02 0.0023 28.8 4.2 24 135-158 85-108 (244)
443 PF01323 DSBA: DSBA-like thior 22.8 1.1E+02 0.0025 27.1 4.1 26 138-163 2-27 (193)
444 PLN00062 TATA-box-binding prot 22.1 5.8E+02 0.013 22.9 8.6 89 196-297 48-136 (179)
445 PF07689 KaiB: KaiB domain; I 21.6 73 0.0016 24.6 2.1 51 144-199 6-56 (82)
446 PF06053 DUF929: Domain of unk 21.5 2.7E+02 0.0058 26.6 6.2 35 118-155 45-79 (249)
447 COG3011 Predicted thiol-disulf 21.2 3.6E+02 0.0077 23.2 6.3 68 338-409 6-73 (137)
448 PF04134 DUF393: Protein of un 21.1 50 0.0011 26.9 1.2 63 141-214 2-67 (114)
449 PRK00366 ispG 4-hydroxy-3-meth 21.0 2.2E+02 0.0047 28.6 5.6 81 145-226 270-355 (360)
450 cd04518 TBP_archaea archaeal T 20.5 6.2E+02 0.013 22.6 8.2 88 196-297 48-136 (174)
451 PF02966 DIM1: Mitosis protein 20.2 4.8E+02 0.01 22.2 6.7 68 336-408 18-87 (133)
452 KOG3414|consensus 20.2 5E+02 0.011 22.0 6.7 94 338-435 23-123 (142)
453 cd03061 GST_N_CLIC GST_N famil 20.0 4.4E+02 0.0095 20.7 6.5 68 144-230 20-88 (91)
No 1
>KOG0912|consensus
Probab=100.00 E-value=1.3e-81 Score=575.61 Aligned_cols=358 Identities=41% Similarity=0.744 Sum_probs=332.3
Q ss_pred cccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 122 l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
|+..|++.++++++.+||.|||+||+++++++|+|+++|..+++++| ++++++|+|||+++..++.+|.|++|||+++|
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P-~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvf 79 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFP-EGKVVWGKVDCDKEDDIADKYHINKYPTLKVF 79 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCC-CcceEEEEcccchhhHHhhhhccccCceeeee
Confidence 46789999999999999999999999999999999999999999999 59999999999999999999999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhhccCCcce
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCK 278 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~ 278 (493)
++|....++|+|+|++++|.+||+++++.++.++.+.++++.+. +..+|+||..+++++|+.|+++|..++ ++|.
T Consensus 80 rnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr--~dc~ 157 (375)
T KOG0912|consen 80 RNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLR--DDCV 157 (375)
T ss_pred eccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHh--hccE
Confidence 99999888999999999999999999999999999999999776 899999999999999999999999999 9999
Q ss_pred EeeeccCCC----CCc---eEEecCC--CcccccCcCCh-HHHHHHHHHhcCCceeecChhcHHHHHhcCCcEEEEEEeC
Q psy9502 279 CFARFRHAG----PPD---VTLQTED--HTEAFQGVFER-SRLVQWFTEKCVPLVREITYENAEEISEEGRPLLILCHRH 348 (493)
Q Consensus 279 f~~~~~~~~----~p~---ivf~~~~--~~~~y~g~~~~-~~l~~wi~~~~~P~v~elt~~n~~~l~~~~~p~lilf~~~ 348 (493)
|.+.+|+.. .|+ ++|+++. ....|.|++++ +.|..||.+.|+|+|+|+|++|++++.++|+|++|||+++
T Consensus 158 f~V~~gD~~~~~~~~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf~~k 237 (375)
T KOG0912|consen 158 FLVGFGDLLKPHEPPGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILFRKK 237 (375)
T ss_pred EEeeccccccCCCCCCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEEecC
Confidence 999998765 444 4455554 44589999999 9999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHh-hhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCccccCCCCCCCCCChhHHHHH
Q psy9502 349 GDLTSVAIFKRIVRDTI-GQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSI 427 (493)
Q Consensus 349 ~d~~~~~~~~~~~~~~~-~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~F 427 (493)
+|.++.+.|...++|++ ++ +..++|+.+||..|.|+ |.|||++.+++|+|+|++++|||.||. ++++..|++|++|
T Consensus 238 dD~~s~k~F~~aI~ReL~~e-~~~in~l~ADG~~f~hp-L~HlgKs~~DLPviaIDsF~Hmylfp~-f~di~~pGkLkqF 314 (375)
T KOG0912|consen 238 DDKESEKIFKNAIARELDDE-TLAINFLTADGKVFKHP-LRHLGKSPDDLPVIAIDSFRHMYLFPD-FNDINIPGKLKQF 314 (375)
T ss_pred CcccHHHHHHHHHHHHhhhh-hhccceeecCcceecch-HHHhCCCcccCcEEEeeccceeeecCc-hhhhcCccHHHHH
Confidence 99999999999999999 44 66699999999999999 999999999999999999999999999 9999999999999
Q ss_pred HHHHHcCCcccccccCCCCCcchhhhhhh--hhcccccCCcccCCCcccccccCCCCCcccccc-cCCC
Q psy9502 428 VEDYFSGKLHADYHDGNSEHCDRRRKAEL--QANVEDVFPIYELETESMFRNLTPSKLRYTLLK-KEEL 493 (493)
Q Consensus 428 i~d~~sGkl~~~~ks~~~P~~~~~~~~~~--~~~~~~~~~~~~~~~~s~f~~l~ps~~r~~~~~-~~el 493 (493)
|.|++|||||+++|.+|.|+ ++.. +.+.+++. ++||+|+|++|+||++|||||. ||||
T Consensus 315 v~DL~sgklHrefH~~~d~~-----~d~e~i~~~a~~~~---t~pP~skfkkl~ps~~rytll~~k~el 375 (375)
T KOG0912|consen 315 VADLHSGKLHREFHEGPDPV-----TDTEEIEDPATEED---TEPPESKFKKLKPSKHRYTLLEQKDEL 375 (375)
T ss_pred HHHHhCchhhHHhhcCCCCC-----CccccccCCCCccC---CCCChHHHhhcCCcccceehhhccCCC
Confidence 99999999999999999997 3333 33334444 7899999999999999999995 9997
No 2
>KOG0190|consensus
Probab=100.00 E-value=7.3e-47 Score=378.85 Aligned_cols=350 Identities=20% Similarity=0.333 Sum_probs=286.2
Q ss_pred CCCCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCcccc
Q psy9502 115 NTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 194 (493)
....|..|+.+||+++|..++.++|.||||||+||+++.|.|+++|..+++.. +.|.+|+|||+++.++|.+|+|++
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~---s~i~LakVDat~~~~~~~~y~v~g 99 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEG---SPVKLAKVDATEESDLASKYEVRG 99 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccC---CCceeEEeecchhhhhHhhhcCCC
Confidence 35679999999999999999999999999999999999999999999999885 489999999999999999999999
Q ss_pred CceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhh
Q psy9502 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTF 271 (493)
Q Consensus 195 ~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l 271 (493)
|||+.+|++|.. +..|+|.|++++|+.|++++.++++..+.+.++++.+. ...+|+||.+..+.. ..|..+|..+
T Consensus 100 yPTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l 177 (493)
T KOG0190|consen 100 YPTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKL 177 (493)
T ss_pred CCeEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhc
Confidence 999999999997 44799999999999999999999999999999998877 788999999877777 8899999999
Q ss_pred ccCCcceEeeeccCCC-------CCc----eEEecCC-CcccccCcCChHHHHHHHHHhcCCceeecChhcHHHHHhcCC
Q psy9502 272 NHFDVCKCFARFRHAG-------PPD----VTLQTED-HTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGR 339 (493)
Q Consensus 272 ~~~~~~~f~~~~~~~~-------~p~----ivf~~~~-~~~~y~g~~~~~~l~~wi~~~~~P~v~elt~~n~~~l~~~~~ 339 (493)
+ +++.|++..+... .++ .++++.+ ....|.|+++.+.|..||..+++|+|.++|.++...++.+..
T Consensus 178 ~--~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~ 255 (493)
T KOG0190|consen 178 R--DDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFV 255 (493)
T ss_pred c--ccceeeccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeecccc
Confidence 9 9999996655322 222 3456655 667778999998899999999999999999999999988866
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCC-eEEEEeCC-ccccCCCCCCC
Q psy9502 340 PLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLP-VLRLDDYK-HIYRLPSLITL 417 (493)
Q Consensus 340 p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P-~ivi~~~~-~~y~~~~~~~~ 417 (493)
+.-++|+..-.....+.+++.+..++++|+++++|+.+|...+++. ++.||+.....| .+++.+.. .+|... .+
T Consensus 256 ~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~-~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~---~e 331 (493)
T KOG0190|consen 256 KLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARV-LEFFGLEEEQLPIRAVILNEDGSKYPLE---EE 331 (493)
T ss_pred ccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHH-HHhcCcccccCCeeEEeeccccccccCc---cc
Confidence 6644444422212334555555555588999999999999999997 999999987788 44444443 556643 34
Q ss_pred CCChhHHHHHHHHHHcCCcccccccCCCCCcchhhhhhhhhcccccCCcccCCCcccccccCCCCCccccc
Q psy9502 418 AENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRRRKAELQANVEDVFPIYELETESMFRNLTPSKLRYTLL 488 (493)
Q Consensus 418 ~~~~~~l~~Fi~d~~sGkl~~~~ks~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~l~ps~~r~~~~ 488 (493)
..+.++|.+|+.+++.|+++|++||||+|+ ....++++- -.+++|.+++-...+--|+
T Consensus 332 ~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe------~~~~~pVkv-------vVgknfd~iv~de~KdVLv 389 (493)
T KOG0190|consen 332 ELDQENIESFVKDFLDGKVKPHLKSQPIPE------DNDRSPVKV-------VVGKNFDDIVLDEGKDVLV 389 (493)
T ss_pred cccHHHHHHHHHHHhcCccccccccCCCCc------ccccCCeEE-------EeecCHHHHhhccccceEE
Confidence 456679999999999999999999999998 222233332 2468888877666555443
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=1e-40 Score=350.99 Aligned_cols=316 Identities=22% Similarity=0.412 Sum_probs=268.1
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
..+..|+.++|++++.+++.++|.|||+||++|+++.|.|.++|+.+++.. +++.++.|||+++..+|++|+|.+||
T Consensus 32 ~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~---~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKK---SEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred CCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcC---CcEEEEEEECCCCHHHHHhcCCCccc
Confidence 579999999999999889999999999999999999999999999987653 48999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhhcc
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTFNH 273 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l~~ 273 (493)
|+++|++|... .|.|.++.+.|++|+.+.+.+++.++.+.+++..+. ...+++++...+++.++.|.++|..++
T Consensus 109 t~~~~~~g~~~--~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~- 185 (477)
T PTZ00102 109 TIKFFNKGNPV--NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHR- 185 (477)
T ss_pred EEEEEECCceE--EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhcc-
Confidence 99999999765 799999999999999999999999999988877654 567788888888899999999999999
Q ss_pred CCcceEeeeccCCCCCc-eEEecCCCcccccCcCChHHHHHHHHHhcCCceeecChhcHHHHHhcCCcEEEEEEeCCCcc
Q psy9502 274 FDVCKCFARFRHAGPPD-VTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLILCHRHGDLT 352 (493)
Q Consensus 274 ~~~~~f~~~~~~~~~p~-ivf~~~~~~~~y~g~~~~~~l~~wi~~~~~P~v~elt~~n~~~l~~~~~p~lilf~~~~d~~ 352 (493)
+++.|+...... .+. .+++..+....+.+..+.++|.+||..+++|++.++|.+|+..++..++++++++...++.
T Consensus 186 -~~~~F~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 262 (477)
T PTZ00102 186 -EHAKFFVKKHEG-KNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWFCGTTEDY- 262 (477)
T ss_pred -ccceEEEEcCCC-CCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEEecCHHHH-
Confidence 888898776554 344 5677655333333334669999999999999999999999999999888776665443332
Q ss_pred hHHHHHHHHHHHhhhcCCcEEEEEEeCcccch-hhhhccCCCCCCCCeEEEEeCCccccCCCCC-CCCCChhHHHHHHHH
Q psy9502 353 SVAIFKRIVRDTIGQYAQNLSFVTADDLFYQR-IFYHHLHLSSDDLPVLRLDDYKHIYRLPSLI-TLAENPSTLVSIVED 430 (493)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~-~~l~~lgi~~~~~P~ivi~~~~~~y~~~~~~-~~~~~~~~l~~Fi~d 430 (493)
+.+.+.+...+++|+++++|+++|+..+.. . ++++|+. .+|++++.+..++|.++. . ....+.+.|.+|+++
T Consensus 263 --~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~-~~~~gi~--~~P~~~i~~~~~~y~~~~-~~~~~~~~~~l~~Fv~~ 336 (477)
T PTZ00102 263 --DKYKSVVRKVARKLREKYAFVWLDTEQFGSHA-KEHLLIE--EFPGLAYQSPAGRYLLPP-AKESFDSVEALIEFFKD 336 (477)
T ss_pred --HHHHHHHHHHHHhccCceEEEEEechhcchhH-HHhcCcc--cCceEEEEcCCcccCCCc-cccccCCHHHHHHHHHH
Confidence 334444444447889999999999999986 6 8899997 489999998777888875 2 234678999999999
Q ss_pred HHcCCcccccccCCCCC
Q psy9502 431 YFSGKLHADYHDGNSEH 447 (493)
Q Consensus 431 ~~sGkl~~~~ks~~~P~ 447 (493)
+.+|+++++++|+|+|+
T Consensus 337 ~~~gk~~~~~~se~~p~ 353 (477)
T PTZ00102 337 VEAGKVEKSIKSEPIPE 353 (477)
T ss_pred HhCCCCCcccccCCCCC
Confidence 99999999999999998
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=1.9e-40 Score=347.52 Aligned_cols=347 Identities=22% Similarity=0.414 Sum_probs=285.1
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
.|..|+.++|+++++++++++|.|||+||++|+++.|.|.++|+.++... +++.++.|||+++.++|++++|.+|||
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKG---PPIKLAKVDATEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcC---CceEEEEEECCCcHHHHHhCCCccccE
Confidence 57899999999999999999999999999999999999999999997653 379999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhhccC
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTFNHF 274 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l~~~ 274 (493)
+++|++|......|.|.++.++|.+|+.+.+.+++.++++.++++.+. ...+|+|+.+.+++.+..|.++|..+.
T Consensus 79 ~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~-- 156 (462)
T TIGR01130 79 LKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLR-- 156 (462)
T ss_pred EEEEeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhh--
Confidence 999999987223799999999999999999999999999999988765 678999998878889999999999998
Q ss_pred CcceEeeeccCC--------CCCc-eEEecCC---CcccccCcCCh--HHHHHHHHHhcCCceeecChhcHHHHHhcCCc
Q psy9502 275 DVCKCFARFRHA--------GPPD-VTLQTED---HTEAFQGVFER--SRLVQWFTEKCVPLVREITYENAEEISEEGRP 340 (493)
Q Consensus 275 ~~~~f~~~~~~~--------~~p~-ivf~~~~---~~~~y~g~~~~--~~l~~wi~~~~~P~v~elt~~n~~~l~~~~~p 340 (493)
+.+.++...... ..+. ++|+..+ ....|.|+.+. ++|.+||..+++|+++++|.+++..+++.+ |
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 157 DVYFFFAHSSDVAAFAKLGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred hccceEEecCCHHHHhhcCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 776644332221 1244 5566654 22478887654 899999999999999999999999999876 8
Q ss_pred EEEEEEeCCCc-chHHHHHHHHHHHhhhcCC-cEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCC--ccccCCCCCC
Q psy9502 341 LLILCHRHGDL-TSVAIFKRIVRDTIGQYAQ-NLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK--HIYRLPSLIT 416 (493)
Q Consensus 341 ~lilf~~~~d~-~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~--~~y~~~~~~~ 416 (493)
++++|+..+.. ...+.+.+.+.+.+.+|++ .+.|+++|+..+++. +..+|++...+|+++|.+.. .+|.+..
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~-~~~~~~~~~~~P~~vi~~~~~~~~y~~~~--- 311 (462)
T TIGR01130 236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRE-LEYFGLKAEKFPAVAIQDLEGNKKYPMDQ--- 311 (462)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHH-HHHcCCCccCCceEEEEeCCcccccCCCc---
Confidence 88888764432 2245666666555578886 899999999999999 99999998889999999876 4577643
Q ss_pred CCCChhHHHHHHHHHHcCCcccccccCCCCCcchhhhhhhhhcccccCCcccCCCcccccccCCCCCccccc
Q psy9502 417 LAENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRRRKAELQANVEDVFPIYELETESMFRNLTPSKLRYTLL 488 (493)
Q Consensus 417 ~~~~~~~l~~Fi~d~~sGkl~~~~ks~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~s~f~~l~ps~~r~~~~ 488 (493)
+..++++|.+||+++++|++++.++|+|+|+ .. .+.+ ....+++|+++.-...+.+|+
T Consensus 312 ~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~-----~~--~~~v-------~~l~~~~f~~~v~~~~~~vlv 369 (462)
T TIGR01130 312 EEFSSENLEAFVKDFLDGKLKPYLKSEPIPE-----DD--EGPV-------KVLVGKNFDEIVLDETKDVLV 369 (462)
T ss_pred CCCCHHHHHHHHHHHhcCCCCeeeccCCCCc-----cC--CCcc-------EEeeCcCHHHHhccCCCeEEE
Confidence 2678899999999999999999999999998 31 1111 223578898887666676665
No 5
>KOG4277|consensus
Probab=100.00 E-value=2.5e-33 Score=257.04 Aligned_cols=303 Identities=19% Similarity=0.306 Sum_probs=229.7
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
..|..|+++ |.+. .+...|+|.||||||+||+++.|+|.++...+++.. ..|.+|++||+..+.++.+++|++||
T Consensus 28 t~VeDLddk-Fkdn-kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig---~PikVGKlDaT~f~aiAnefgiqGYP 102 (468)
T KOG4277|consen 28 TAVEDLDDK-FKDN-KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIG---LPIKVGKLDATRFPAIANEFGIQGYP 102 (468)
T ss_pred hhhhhhhHH-hhhc-ccCCeEEEEeechhhhhcccccchhHHhCcchhhcC---CceeecccccccchhhHhhhccCCCc
Confidence 345555443 2221 345799999999999999999999999999998874 48999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCC-chhhhccC--CceEEEEecCCCCchhHHHHHHHhhhcc
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEE-APKFNVHD--KTLMLGRFNSKNSPEYELFSRVCSTFNH 273 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s-~~~l~~~~--~~~vv~ff~~~~~~~~~~f~~~A~~l~~ 273 (493)
||++|++|... .|+|.|+.++|++|..+-..+-+..+.+ ..++..+. ......||....++.+..|..+|...-
T Consensus 103 TIk~~kgd~a~--dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~- 179 (468)
T KOG4277|consen 103 TIKFFKGDHAI--DYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKF- 179 (468)
T ss_pred eEEEecCCeee--ecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhhe-
Confidence 99999999876 5999999999999999987777776644 23344554 556666777778899999999999876
Q ss_pred CCcceEeeeccCCC--------CCc-eEEecCCCcccccCcCChHHHHHHHHHhcCCceeecChhcHHHHHhcCCcEEEE
Q psy9502 274 FDVCKCFARFRHAG--------PPD-VTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLIL 344 (493)
Q Consensus 274 ~~~~~f~~~~~~~~--------~p~-ivf~~~~~~~~y~g~~~~~~l~~wi~~~~~P~v~elt~~n~~~l~~~~~p~lil 344 (493)
.-..|+....++. .|. .||++..-.+..+|+ .++|..||+..++|.+-..+..++.++...|+-+++.
T Consensus 180 -~~a~FfSaseeVaPe~~~~kempaV~VFKDetf~i~de~d--d~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLa 256 (468)
T KOG4277|consen 180 -SVARFFSASEEVAPEENDAKEMPAVAVFKDETFEIEDEGD--DEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALA 256 (468)
T ss_pred -eeeeeeccccccCCcccchhhccceEEEccceeEEEecCc--hhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEE
Confidence 6666766544433 456 667775433333443 4799999999999999999999999999888877776
Q ss_pred EEeCC----CcchHHHHHHHHHHHhhhc------CCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCC-ccccCCC
Q psy9502 345 CHRHG----DLTSVAIFKRIVRDTIGQY------AQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK-HIYRLPS 413 (493)
Q Consensus 345 f~~~~----d~~~~~~~~~~~~~~~~~~------~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~-~~y~~~~ 413 (493)
..+.. +....++|.++++..++.+ .+++.|+|+||..+... +.+-.+ ..|.++|.+.. ..|+...
T Consensus 257 VidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nq-ilM~al---s~P~l~i~NtsnqeYfLse 332 (468)
T KOG4277|consen 257 VIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQ-ILMAAL---SEPHLFIFNTSNQEYFLSE 332 (468)
T ss_pred EeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHH-HHHHhh---cCCeEEEEecCchheeecc
Confidence 66533 3345678887766555333 34699999999988776 544333 57999998875 5566543
Q ss_pred CCCCCCChhHHHHHHHHHHcC
Q psy9502 414 LITLAENPSTLVSIVEDYFSG 434 (493)
Q Consensus 414 ~~~~~~~~~~l~~Fi~d~~sG 434 (493)
.-..+.+.+.|.+||++-..|
T Consensus 333 ~d~qikniedilqFientseg 353 (468)
T KOG4277|consen 333 DDPQIKNIEDILQFIENTSEG 353 (468)
T ss_pred CChhhhhHHHHHHHHhccccc
Confidence 123466778999999995444
No 6
>KOG0190|consensus
Probab=99.97 E-value=5.4e-32 Score=271.89 Aligned_cols=139 Identities=27% Similarity=0.503 Sum_probs=124.8
Q ss_pred CChhhHHHHHHHHhccC-CCCccCCCCCCCCCCCCcEEcccccHHHHH-cCCCeEEEEEEcCCChhHhhhhHHHHHHHHH
Q psy9502 85 DHLTSLSSHVDDWLLSR-NPVLCTHPLHYTNNTTRVKYLRQNNFTEVL-SQYKLAVVNFYADWCRFCHLLKPVLEETAAI 162 (493)
Q Consensus 85 ~~~~~l~~fi~~~~~~~-~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~ 162 (493)
.+.++|.+|+.+++.|+ +++++|+|+|..+..+.|+.|.++||++++ ++.+.|||.||||||+||+++.|+|++||+.
T Consensus 333 ~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~ 412 (493)
T KOG0190|consen 333 LDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEK 412 (493)
T ss_pred ccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHH
Confidence 44557999999999999 999999999998766889999999999965 7779999999999999999999999999999
Q ss_pred HhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeee-eeecccCCCHHHHHHHHHHHcC
Q psy9502 163 VDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLAT-RSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 163 ~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~-~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+++. ++|++|+||.+.|. .....|++||||++|+.|.+. ++.|.|.|+.++|..|+.+...
T Consensus 413 ~~~~----~~vviAKmDaTaNd--~~~~~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 413 YKDD----ENVVIAKMDATAND--VPSLKVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred hcCC----CCcEEEEecccccc--CccccccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9885 48999999999986 355678889999999998864 5789999999999999998775
No 7
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=7.1e-28 Score=226.85 Aligned_cols=321 Identities=17% Similarity=0.261 Sum_probs=227.3
Q ss_pred CCCCCCCCCCCCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhh-----hhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 107 THPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHL-----LKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 107 s~~~p~~~~~~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~-----l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
...+|..++..+|+.|+.+||.+++...+..+|+||.|--..-.. +....-++|.++.+. .+|.||.||..
T Consensus 24 gLefP~YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~----~gigfg~VD~~ 99 (383)
T PF01216_consen 24 GLEFPEYDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED----KGIGFGMVDSK 99 (383)
T ss_dssp --SSSS-SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG----CTEEEEEEETT
T ss_pred ccCCccCCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc----cCcceEEeccH
Confidence 344777888889999999999999999999999999986432222 223345566665554 38999999999
Q ss_pred CCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC----CceEEEEecCCC
Q psy9502 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD----KTLMLGRFNSKN 257 (493)
Q Consensus 182 ~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~----~~~vv~ff~~~~ 257 (493)
++..+++++|+...+++.+|++|..+ +|.|.++++.|++||...+..||..|++..+++.+. .+.+||||.++.
T Consensus 100 Kd~klAKKLgv~E~~SiyVfkd~~~I--EydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~ 177 (383)
T PF01216_consen 100 KDAKLAKKLGVEEEGSIYVFKDGEVI--EYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSED 177 (383)
T ss_dssp TTHHHHHHHT--STTEEEEEETTEEE--EE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTT
T ss_pred HHHHHHHhcCccccCcEEEEECCcEE--EecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCC
Confidence 99999999999999999999999976 699999999999999999999999999998886554 789999999999
Q ss_pred CchhHHHHHHHhhhccCCcceEeeeccCCC------CCc--eEEecCC-CcccccCcCCh-HHHHHHHHHhcCCceeecC
Q psy9502 258 SPEYELFSRVCSTFNHFDVCKCFARFRHAG------PPD--VTLQTED-HTEAFQGVFER-SRLVQWFTEKCVPLVREIT 327 (493)
Q Consensus 258 ~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~------~p~--ivf~~~~-~~~~y~g~~~~-~~l~~wi~~~~~P~v~elt 327 (493)
++.|+.|..+|..++ +.+.|++++.... ..+ -.|++.. .+....|.... ++|.+||+.|.-|.++.++
T Consensus 178 s~~yk~FeeAAe~F~--p~IkFfAtfd~~vAk~L~lK~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~ 255 (383)
T PF01216_consen 178 SEHYKEFEEAAEHFQ--PYIKFFATFDKKVAKKLGLKLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLR 255 (383)
T ss_dssp SHHHHHHHHHHHHCT--TTSEEEEE-SHHHHHHHT-STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--
T ss_pred cHHHHHHHHHHHhhc--CceeEEEEecchhhhhcCccccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCC
Confidence 999999999999999 9999999987532 233 3467765 77777776655 9999999999999999999
Q ss_pred hhcHHHHHhc--CCcEEEEEEeCCCcchHHHHHHHHHHHhhhc--CCcEEEEEEeCcccchhhh----hccCCCCCCCCe
Q psy9502 328 YENAEEISEE--GRPLLILCHRHGDLTSVAIFKRIVRDTIGQY--AQNLSFVTADDLFYQRIFY----HHLHLSSDDLPV 399 (493)
Q Consensus 328 ~~n~~~l~~~--~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~--~~~i~f~~~d~~~~~~~~l----~~lgi~~~~~P~ 399 (493)
++|+.+..+. +..+++.|...++.. =.+|.+++.++++.+ ...+.++|+|...|+-. . +.|||+-. -|+
T Consensus 256 ~~~m~e~Wedd~~g~hIvaFaee~dpd-G~efleilk~va~~nt~np~LsivwIDPD~fPll-v~yWE~tF~Idl~-~Pq 332 (383)
T PF01216_consen 256 PEDMFETWEDDIDGIHIVAFAEEEDPD-GFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLL-VPYWEKTFGIDLS-RPQ 332 (383)
T ss_dssp GGGHHHHHHSSSSSEEEEEE--TTSHH-HHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHH-HHHHHHHHTT-TT-S-E
T ss_pred hhhhhhhhcccCCCceEEEEecCCCCc-hHHHHHHHHHHHHhcCcCCceeEEEECCCCCchh-HHHHHhhcCcccc-CCc
Confidence 9999888765 345677788776643 346666666555221 23699999999999866 5 45899876 599
Q ss_pred EEEEeCC---cccc-CCCCCCCCCChhHHHHHHHHHHcCCcccc
Q psy9502 400 LRLDDYK---HIYR-LPSLITLAENPSTLVSIVEDYFSGKLHAD 439 (493)
Q Consensus 400 ivi~~~~---~~y~-~~~~~~~~~~~~~l~~Fi~d~~sGkl~~~ 439 (493)
|.+.+.. ..|. +++ -++..+.+.|..||.|+++|++...
T Consensus 333 IGvVnvtdadsvW~dm~d-~~d~pt~~~LedWieDVlsg~i~~e 375 (383)
T PF01216_consen 333 IGVVNVTDADSVWMDMDD-DDDLPTAEELEDWIEDVLSGKINTE 375 (383)
T ss_dssp EEEEETTTSEEEEC-STT-TSS---HHHHHHHHHHHHCTCCTB-
T ss_pred eeEEeccccccchhccCC-cccCCcHHHHHHHHHHHhcCCCCCc
Confidence 9998875 3333 444 3577899999999999999999754
No 8
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=3.3e-24 Score=178.23 Aligned_cols=109 Identities=17% Similarity=0.297 Sum_probs=97.7
Q ss_pred CCCCCCCCCCcEEcccccHHHH---HcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc
Q psy9502 109 PLHYTNNTTRVKYLRQNNFTEV---LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185 (493)
Q Consensus 109 ~~p~~~~~~~v~~l~~~nf~~~---l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~ 185 (493)
|.|.....+.|++|+++||+++ ++++++++|.||||||++|+.+.|.|+++|+.+ .+.+.|++|||+++.+
T Consensus 1 ~~~~~~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~------~~~v~~~~Vd~d~~~~ 74 (113)
T cd03006 1 PVPFFSQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKL------SDQVLFVAINCWWPQG 74 (113)
T ss_pred CCCccCCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHh------cCCeEEEEEECCCChH
Confidence 3455666788999999999986 578899999999999999999999999999998 3469999999999999
Q ss_pred cc-ccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 186 IR-DFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 186 l~-~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+| ++|+|.+|||+++|++|... ..|.|.++.+.|+.|+
T Consensus 75 l~~~~~~I~~~PTl~lf~~g~~~-~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 75 KCRKQKHFFYFPVIHLYYRSRGP-IEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHHhcCCcccCEEEEEECCccc-eEEeCCCCHHHHHhhC
Confidence 99 58999999999999998864 4799999999999884
No 9
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=4.4e-23 Score=171.81 Aligned_cols=107 Identities=44% Similarity=0.894 Sum_probs=97.5
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
.|+.|++++|+++++++++++|.||||||++|+++.|.|+++|+.+++..++.+.+.+++|||++++++|++|+|++|||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 58899999999999888999999999999999999999999999997665423469999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+++|++|......|.|.++.++|++||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 999999985445899999999999986
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.88 E-value=1.6e-22 Score=166.21 Aligned_cols=100 Identities=25% Similarity=0.548 Sum_probs=92.9
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
+|+.|+.++|++.+.++++|+|.|||+||++|+++.|.|+++|+++ .+.+.|++|||++++.+|++++|++|||
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~------~~~~~~~~vd~~~~~~~~~~~~v~~~Pt 75 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEM------DGVIRIGAVNCGDDRMLCRSQGVNSYPS 75 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHh------cCceEEEEEeCCccHHHHHHcCCCccCE
Confidence 5789999999999988899999999999999999999999999998 4579999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+++|++|.... .|.|.++.++|.+|+
T Consensus 76 ~~~~~~g~~~~-~~~G~~~~~~l~~f~ 101 (101)
T cd03003 76 LYVFPSGMNPE-KYYGDRSKESLVKFA 101 (101)
T ss_pred EEEEcCCCCcc-cCCCCCCHHHHHhhC
Confidence 99999997654 799999999999884
No 11
>KOG0191|consensus
Probab=99.88 E-value=5.3e-23 Score=209.45 Aligned_cols=204 Identities=19% Similarity=0.258 Sum_probs=150.2
Q ss_pred EEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhhhcCCCcccccceEE-EecccccccCc--------CC
Q psy9502 10 VEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLEECTMTSKERRKALR-LYGNAFYKDHS--------ST 80 (493)
Q Consensus 10 ~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~--------~~ 80 (493)
......+.++|+||+|| |+||+.++|.|++++..++..-.++.-.++....++ .|...+||+.. ..
T Consensus 42 ~~~~~~~~~~v~fyapw-----c~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~ 116 (383)
T KOG0191|consen 42 FLLKDDSPWLVEFYAPW-----CGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPID 116 (383)
T ss_pred HhhccCCceEEEEECCC-----CcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceee
Confidence 34567788889999999 999999999999776666651112221111111111 22222344421 11
Q ss_pred CCCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEcccccHHHHH-cCCCeEEEEEEcCCChhHhhhhHHHHHH
Q psy9502 81 MGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQNNFTEVL-SQYKLAVVNFYADWCRFCHLLKPVLEET 159 (493)
Q Consensus 81 ~~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l-~~~~~~lV~Fya~wC~~C~~l~p~~~~~ 159 (493)
..+..+.+.+..|+.+.+....... ....|..|+..+|...+ +.+..|+|.||+|||+||+.+.|.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~ 187 (383)
T KOG0191|consen 117 YSGPRNAESLAEFLIKELEPSVKKL---------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKL 187 (383)
T ss_pred ccCcccHHHHHHHHHHhhccccccc---------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHH
Confidence 2225567788888777664431110 11259999999999854 6678999999999999999999999999
Q ss_pred HHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCC
Q psy9502 160 AAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDP 231 (493)
Q Consensus 160 a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~ 231 (493)
+..++.. +.+.++.+||+.+..+|.+++|.+|||+++|++|......|.|.|+.+.+++|+.+.....
T Consensus 188 a~~~~~~----~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 188 AKLLKSK----ENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHhccC----cceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9988652 4899999999999999999999999999999998872235789999999999999988764
No 12
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.86 E-value=9.5e-22 Score=162.35 Aligned_cols=100 Identities=17% Similarity=0.323 Sum_probs=88.4
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEc--CCCh---hHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeC-----CCCcccc
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYA--DWCR---FCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC-----DEEPRIR 187 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya--~wC~---~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~-----~~~~~l~ 187 (493)
.++.|+..||++++.+++.+||.||| |||+ ||++|.|.|.+++. .|.+|+||| +++.+||
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~----------~v~lakVd~~d~~~~~~~~L~ 71 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD----------DLLVAEVGIKDYGEKLNMELG 71 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC----------ceEEEEEecccccchhhHHHH
Confidence 47899999999999999999999999 9999 88888888877653 588999999 5678899
Q ss_pred ccCccc--cCceEEEEeCCe-eeeeecccC-CCHHHHHHHHHHH
Q psy9502 188 DFFHIT--KYPTLKIIRNGL-ATRSEYRSQ-RTTEALLNFIAEE 227 (493)
Q Consensus 188 ~~~~i~--~~Ptl~~f~~g~-~~~~~y~G~-~~~~~l~~fi~~~ 227 (493)
++|+|+ +||||++|++|. ..+..|.|. |+.++|++||+++
T Consensus 72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999 999999999995 234579996 9999999999986
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.85 E-value=6.8e-21 Score=156.84 Aligned_cols=102 Identities=32% Similarity=0.658 Sum_probs=96.1
Q ss_pred cEEcccccHHHHHcC-CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 119 VKYLRQNNFTEVLSQ-YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 119 v~~l~~~nf~~~l~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|+++++.+ .+++.++.|||++++.+|++|+|+++||
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~------~~~v~~~~vd~~~~~~l~~~~~v~~~Pt 74 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEY------KDNVKFAKVDCDENKELCKKYGVKSVPT 74 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHT------TTTSEEEEEETTTSHHHHHHTTCSSSSE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccc------ccccccchhhhhccchhhhccCCCCCCE
Confidence 578999999999876 899999999999999999999999999998 3479999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+++|++|+... +|.|.++.++|.+||+++
T Consensus 75 ~~~~~~g~~~~-~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 75 IIFFKNGKEVK-RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEEETTEEEE-EEESSSSHHHHHHHHHHH
T ss_pred EEEEECCcEEE-EEECCCCHHHHHHHHHcC
Confidence 99999999887 899999999999999875
No 14
>PTZ00102 disulphide isomerase; Provisional
Probab=99.85 E-value=2e-20 Score=196.97 Aligned_cols=144 Identities=23% Similarity=0.444 Sum_probs=129.8
Q ss_pred CChhhHHHHHHHHhccC-CCCccCCCCCCCCCCCCcEEcccccHHHH-HcCCCeEEEEEEcCCChhHhhhhHHHHHHHHH
Q psy9502 85 DHLTSLSSHVDDWLLSR-NPVLCTHPLHYTNNTTRVKYLRQNNFTEV-LSQYKLAVVNFYADWCRFCHLLKPVLEETAAI 162 (493)
Q Consensus 85 ~~~~~l~~fi~~~~~~~-~~~~~s~~~p~~~~~~~v~~l~~~nf~~~-l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~ 162 (493)
.+.++|.+|+.++..|+ .+.++|+|+|.. ..+.|..|++++|+++ +++++++||.|||+||++|+.+.|.|+++|+.
T Consensus 325 ~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~-~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~ 403 (477)
T PTZ00102 325 DSVEALIEFFKDVEAGKVEKSIKSEPIPEE-QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEK 403 (477)
T ss_pred CCHHHHHHHHHHHhCCCCCcccccCCCCCC-CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 57899999999999999 999999998865 3678999999999997 57778999999999999999999999999998
Q ss_pred HhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcc
Q psy9502 163 VDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233 (493)
Q Consensus 163 ~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~ 233 (493)
+++. +.+.++.+||+.+..+|++++|+++||+++|++|...+..|.|.++.++|.+||.++...+..
T Consensus 404 ~~~~----~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~~~ 470 (477)
T PTZ00102 404 YKDN----DSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNPFE 470 (477)
T ss_pred hccC----CcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCCcc
Confidence 8643 379999999999999999999999999999999887666899999999999999998875443
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.85 E-value=3.3e-21 Score=159.29 Aligned_cols=101 Identities=26% Similarity=0.550 Sum_probs=90.5
Q ss_pred CcEEcccccHHHHH-cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 118 RVKYLRQNNFTEVL-SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 118 ~v~~l~~~nf~~~l-~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
.|+.|+.++|++.+ +++++++|.|||+||++|+++.|.|+++++.+ .+.+.+++|||++++++|++++|+++|
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~i~~~P 75 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARAL------KGKVKVGSVDCQKYESLCQQANIRAYP 75 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh------cCCcEEEEEECCchHHHHHHcCCCccc
Confidence 47889999999976 55679999999999999999999999999998 357999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCC-HHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRT-TEALLNFI 224 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~-~~~l~~fi 224 (493)
|+++|++|.....+|.|.++ .++|.+||
T Consensus 76 t~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 76 TIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99999998433458999987 99999885
No 16
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.84 E-value=1.1e-20 Score=158.13 Aligned_cols=113 Identities=14% Similarity=0.260 Sum_probs=96.9
Q ss_pred CCCCCCCCCcEEcccccHHHHHcCC-CeEEEEEEcCCChh--Hh--hhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 110 LHYTNNTTRVKYLRQNNFTEVLSQY-KLAVVNFYADWCRF--CH--LLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 110 ~p~~~~~~~v~~l~~~nf~~~l~~~-~~~lV~Fya~wC~~--C~--~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
.|..++...|..||++||++.+.++ .+++|.|||+||++ |+ ++.|++.++|.++-+. +++.|++|||++++
T Consensus 2 ~~~~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~----~~v~~~kVD~d~~~ 77 (120)
T cd03065 2 FPEYDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED----KGIGFGLVDSKKDA 77 (120)
T ss_pred CcccCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc----CCCEEEEEeCCCCH
Confidence 4556677889999999999977555 58888888889965 99 8888888888776432 37999999999999
Q ss_pred cccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 185 RIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 185 ~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
+++++|+|+++||+++|++|+.. .|.|.++.+.|++||.+..
T Consensus 78 ~La~~~~I~~iPTl~lfk~G~~v--~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFKDDEVI--EYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHcCCccccEEEEEECCEEE--EeeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999965 4999999999999999754
No 17
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.83 E-value=2e-20 Score=153.73 Aligned_cols=100 Identities=34% Similarity=0.598 Sum_probs=89.7
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
.|+.|+.++|++++.+. ++|.|||+||++|+.+.|.|+++++.++. .++.+++|||++++.+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-----~~v~~~~vd~~~~~~~~~~~~i~~~Pt 74 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDD-----LGINVAKVDVTQEPGLSGRFFVTALPT 74 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhcc-----CCeEEEEEEccCCHhHHHHcCCcccCE
Confidence 58899999999988543 89999999999999999999999987632 269999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
+++|++|.. ..|.|.++.++|.+|+.+
T Consensus 75 ~~~~~~g~~--~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 75 IYHAKDGVF--RRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEEeCCCCE--EEecCCCCHHHHHHHHhC
Confidence 999999974 379999999999999864
No 18
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.83 E-value=3e-18 Score=179.65 Aligned_cols=381 Identities=13% Similarity=0.099 Sum_probs=244.5
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh-hcCCCcccc--cceEE-EecccccccC---------cC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE-ECTMTSKER--RKALR-LYGNAFYKDH---------SS 79 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~-~~~i~~~~~--~~~~~-~~~~~~~~~~---------~~ 79 (493)
..+++++|.||||| |+||+.++|.|+++++.+.... .+.+...+. ...++ .+.-.+||+. ..
T Consensus 16 ~~~~~~~v~f~a~w-----C~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 90 (462)
T TIGR01130 16 KSHEFVLVEFYAPW-----CGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVS 90 (462)
T ss_pred hcCCCEEEEEECCC-----CHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCcccee
Confidence 56778999999999 9999999999988776655422 233322221 00011 1111123321 12
Q ss_pred CCCCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEcc-cccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHH
Q psy9502 80 TMGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLR-QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEE 158 (493)
Q Consensus 80 ~~~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~-~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~ 158 (493)
...+..+.++|.+|+.+.+. ..+..++ .++++..+..+...+|.|+..- -......|.+
T Consensus 91 ~~~g~~~~~~l~~~i~~~~~-----------------~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~---~~~~~~~~~~ 150 (462)
T TIGR01130 91 DYNGPRDADGIVKYMKKQSG-----------------PAVKEIETVADLEAFLADDDVVVIGFFKDL---DSELNDTFLS 150 (462)
T ss_pred EecCCCCHHHHHHHHHHhcC-----------------CCceeecCHHHHHHHHhcCCcEEEEEECCC---CcHHHHHHHH
Confidence 23345678888889888641 2345564 5788888888888888887652 2467778999
Q ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeee--eecccCC--CHHHHHHHHHHHcCCCccc
Q psy9502 159 TAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATR--SEYRSQR--TTEALLNFIAEELKDPVMD 234 (493)
Q Consensus 159 ~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~--~~y~G~~--~~~~l~~fi~~~~~~~~~~ 234 (493)
+|..+.... ..++.. .+..+..++++. -|++.+|....... ..|.|.. +.+.|.+||..+..+.+.+
T Consensus 151 ~a~~~~~~~-----~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~ 221 (462)
T TIGR01130 151 VAEKLRDVY-----FFFAHS---SDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE 221 (462)
T ss_pred HHHHhhhcc-----ceEEec---CCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence 999885432 113222 234566677654 37777775433222 2467764 5689999999999999988
Q ss_pred CCCchhhhccC--CceEEEEecCC-C----CchhHHHHHHHhhhccCC-cceEeeeccC-----------C--CCCceE-
Q psy9502 235 LEEAPKFNVHD--KTLMLGRFNSK-N----SPEYELFSRVCSTFNHFD-VCKCFARFRH-----------A--GPPDVT- 292 (493)
Q Consensus 235 i~s~~~l~~~~--~~~vv~ff~~~-~----~~~~~~f~~~A~~l~~~~-~~~f~~~~~~-----------~--~~p~iv- 292 (493)
+ +.+.+..+. ++.+++|+... . ....+.|.++|..++ + .+.|+...+. . ..|.++
T Consensus 222 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~--~~~i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi 298 (462)
T TIGR01130 222 F-TQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFR--GKFVNFAVADEEDFGRELEYFGLKAEKFPAVAI 298 (462)
T ss_pred e-CCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCC--CCeEEEEEecHHHhHHHHHHcCCCccCCceEEE
Confidence 8 444443332 34444444322 2 234578999999998 6 6666654332 1 378844
Q ss_pred EecCC-CcccccC-cCChHHHHHHHHHhc-----------------CCceeecChhcHHHHH-hcCCcEEEEEEeCCCcc
Q psy9502 293 LQTED-HTEAFQG-VFERSRLVQWFTEKC-----------------VPLVREITYENAEEIS-EEGRPLLILCHRHGDLT 352 (493)
Q Consensus 293 f~~~~-~~~~y~g-~~~~~~l~~wi~~~~-----------------~P~v~elt~~n~~~l~-~~~~p~lilf~~~~d~~ 352 (493)
+...+ ....+.+ .++.+.|.+|+++.. -..+..++..++.++. ..+++++|.|+.++| .
T Consensus 299 ~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC-~ 377 (462)
T TIGR01130 299 QDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWC-G 377 (462)
T ss_pred EeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCC-H
Confidence 44333 2334444 566699999999743 1246678899999876 457899999999998 5
Q ss_pred hHHHHHHHHHHHhhhcCC---cEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCccccCCCCCCCCCChhHHHHHHH
Q psy9502 353 SVAIFKRIVRDTIGQYAQ---NLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVE 429 (493)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~---~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~ 429 (493)
.++.+...+.+.++.+++ ++.|+.+|+...... . +++ ..+|.+++...+.+..-.. +.+..+.+.|.+||.
T Consensus 378 ~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~--~-~~i--~~~Pt~~~~~~~~~~~~~~-~~g~~~~~~l~~~l~ 451 (462)
T TIGR01130 378 HCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP--P-FEV--EGFPTIKFVPAGKKSEPVP-YDGDRTLEDFSKFIA 451 (462)
T ss_pred hHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC--C-CCc--cccCEEEEEeCCCCcCceE-ecCcCCHHHHHHHHH
Confidence 677776666555555565 799999999865433 3 666 5799999987654421011 233456799999999
Q ss_pred HHHcCCcc
Q psy9502 430 DYFSGKLH 437 (493)
Q Consensus 430 d~~sGkl~ 437 (493)
...+.++.
T Consensus 452 ~~~~~~~~ 459 (462)
T TIGR01130 452 KHATFPLE 459 (462)
T ss_pred hcCCCCCc
Confidence 98877765
No 19
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.82 E-value=9.3e-19 Score=160.09 Aligned_cols=173 Identities=23% Similarity=0.387 Sum_probs=141.1
Q ss_pred ecCCCCchhHHHHHHHhhhccCCcceEeeeccC-------CCCCc-eEEecCC-CcccccCc-CChHHHHHHHHHhcCCc
Q psy9502 253 FNSKNSPEYELFSRVCSTFNHFDVCKCFARFRH-------AGPPD-VTLQTED-HTEAFQGV-FERSRLVQWFTEKCVPL 322 (493)
Q Consensus 253 f~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~-------~~~p~-ivf~~~~-~~~~y~g~-~~~~~l~~wi~~~~~P~ 322 (493)
|.+.+++.++.|.++|..++ +++.|+.+... ...|+ ++|++.+ .+..|.|+ ++.++|.+||..+++|+
T Consensus 1 F~~~~~~~~~~f~~~A~~~~--~~~~F~~~~~~~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~ 78 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLK--GDYQFGVTFNEELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL 78 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHT--TTSEEEEEE-HHHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS
T ss_pred CCCcccHHHHHHHHHHHhCc--CCcEEEEEcHHHHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc
Confidence 56678899999999999999 99999988642 12488 6688866 78999998 77799999999999999
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRL 402 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi 402 (493)
|.++|.+|+..++..++|.+++++...+....+.+.+.+...+.++++++.|+|+|+..++.. ++.||++..++|+++|
T Consensus 79 v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~-~~~~~i~~~~~P~~vi 157 (184)
T PF13848_consen 79 VPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRL-LKYFGIDEDDLPALVI 157 (184)
T ss_dssp CEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHH-HHHTTTTTSSSSEEEE
T ss_pred ccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHH-HHHcCCCCccCCEEEE
Confidence 999999999999999988444444444456667777777666678899999999999999998 9999999999999999
Q ss_pred EeC-CccccCCCCCCCCCChhHHHHHHHH
Q psy9502 403 DDY-KHIYRLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 403 ~~~-~~~y~~~~~~~~~~~~~~l~~Fi~d 430 (493)
.+. .++|+|.. .+..++++|.+||+|
T Consensus 158 ~~~~~~~~~~~~--~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 158 FDSNKGKYYYLP--EGEITPESIEKFLND 184 (184)
T ss_dssp EETTTSEEEE----SSCGCHHHHHHHHHH
T ss_pred EECCCCcEEcCC--CCCCCHHHHHHHhcC
Confidence 885 34554432 456788999999986
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.81 E-value=9e-20 Score=152.01 Aligned_cols=101 Identities=32% Similarity=0.628 Sum_probs=90.5
Q ss_pred cEEcccccHHHHHc-CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccC
Q psy9502 119 VKYLRQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKY 195 (493)
Q Consensus 119 v~~l~~~nf~~~l~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~ 195 (493)
|+.|++++|++.+. ++++++|.|||+||++|+++.|.|+++++.+ .+.+.++.|||++ +..+|++|+|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~------~~~~~~~~v~~~~~~~~~~~~~~~i~~~ 75 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKEL------DGLVQVAAVDCDEDKNKPLCGKYGVQGF 75 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHh------cCCceEEEEecCccccHHHHHHcCCCcC
Confidence 78899999999874 4568999999999999999999999999988 3478999999999 8899999999999
Q ss_pred ceEEEEeCCe----eeeeecccCCCHHHHHHHHH
Q psy9502 196 PTLKIIRNGL----ATRSEYRSQRTTEALLNFIA 225 (493)
Q Consensus 196 Ptl~~f~~g~----~~~~~y~G~~~~~~l~~fi~ 225 (493)
||+++|.+|. .....|.|.++.++|++||.
T Consensus 76 Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 76 PTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred CEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9999999986 23457999999999999983
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.81 E-value=1.6e-19 Score=148.59 Aligned_cols=101 Identities=27% Similarity=0.597 Sum_probs=90.9
Q ss_pred cEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceE
Q psy9502 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTL 198 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl 198 (493)
++.|++++|++.+.++ .++|.|||+||++|+.+.|.|.++++.++... ..+.++.|||+++..+|++|+|.++||+
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNEN---PSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccC---CcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 6789999999988655 59999999999999999999999999996522 3799999999999999999999999999
Q ss_pred EEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 199 KIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 199 ~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
++|++|.... +|.|.++.++|.+||
T Consensus 78 ~~~~~g~~~~-~~~G~~~~~~l~~~i 102 (102)
T cd03005 78 LLFKDGEKVD-KYKGTRDLDSLKEFV 102 (102)
T ss_pred EEEeCCCeee-EeeCCCCHHHHHhhC
Confidence 9999998654 799999999999885
No 22
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=1.1e-19 Score=151.39 Aligned_cols=102 Identities=25% Similarity=0.482 Sum_probs=89.4
Q ss_pred CcEEcccccHHHHHc---CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-Cccccc-cCcc
Q psy9502 118 RVKYLRQNNFTEVLS---QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIRD-FFHI 192 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~---~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-~~~l~~-~~~i 192 (493)
.|++++.++|+.++. ++++++|.|||+||++|+++.|.|+++++.+++. ++.++.|||+. +..+|. .++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-----~~~~~~vd~d~~~~~~~~~~~~v 76 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-----NVKVAKFNADGEQREFAKEELQL 76 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-----CeEEEEEECCccchhhHHhhcCC
Confidence 588999999999773 4689999999999999999999999999998522 69999999998 577887 4999
Q ss_pred ccCceEEEEeCCeeeeeecccC-CCHHHHHHHH
Q psy9502 193 TKYPTLKIIRNGLATRSEYRSQ-RTTEALLNFI 224 (493)
Q Consensus 193 ~~~Ptl~~f~~g~~~~~~y~G~-~~~~~l~~fi 224 (493)
+++||+++|.+|......|.|. |+.++|+.||
T Consensus 77 ~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 77 KSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999999999887655689995 9999999986
No 23
>KOG0910|consensus
Probab=99.80 E-value=2.2e-19 Score=151.97 Aligned_cols=106 Identities=25% Similarity=0.502 Sum_probs=97.7
Q ss_pred CCcEEcccccHHH-HHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccC
Q psy9502 117 TRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195 (493)
Q Consensus 117 ~~v~~l~~~nf~~-~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 195 (493)
..+..++..+|++ ++++..+|+|.|||+||++|+.+.|.+++++..+ .|.+.+++||.+++.+++.+|+|..+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~------~g~~k~~kvdtD~~~ela~~Y~I~av 116 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEY------AGKFKLYKVDTDEHPELAEDYEISAV 116 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhh------cCeEEEEEEccccccchHhhcceeee
Confidence 4577788899988 6788899999999999999999999999999998 57899999999999999999999999
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
||+++|++|++.. .+-|..+.+.|.+||++.+.
T Consensus 117 PtvlvfknGe~~d-~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 117 PTVLVFKNGEKVD-RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred eEEEEEECCEEee-eecccCCHHHHHHHHHHHhc
Confidence 9999999999886 79999999999999998653
No 24
>KOG0191|consensus
Probab=99.80 E-value=6.3e-19 Score=179.59 Aligned_cols=197 Identities=22% Similarity=0.394 Sum_probs=152.4
Q ss_pred CcEEcccccHHH-HHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 118 RVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 118 ~v~~l~~~nf~~-~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
.+..++..+|.. .+..+.+++|.||||||+||+.+.|+|.++++.+ .+.+.+|.|||+++.++|++|+|++||
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l------~~~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKAL------KGKVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHh------cCceEEEEeCchhhHHHHHhcCCccCc
Confidence 344444555544 6677899999999999999999999999999999 567999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCc-------hhhhcc----CCceEEEEecCCCC---chhH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEA-------PKFNVH----DKTLMLGRFNSKNS---PEYE 262 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~-------~~l~~~----~~~~vv~ff~~~~~---~~~~ 262 (493)
|+.+|.+| ...+.|.|.++.+.+.+|+...+.+.+...... ..+... ...++|.||.+++. ...+
T Consensus 104 tl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~ 182 (383)
T KOG0191|consen 104 TLKVFRPG-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAP 182 (383)
T ss_pred EEEEEcCC-CceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcCh
Confidence 99999999 445689999999999999999998876655333 111111 17789999999876 3357
Q ss_pred HHHHHHhhhccCCcceEeeecc-----------CCCCCceEEecCC-C-cccccCcCChHHHHHHHHHhcCC
Q psy9502 263 LFSRVCSTFNHFDVCKCFARFR-----------HAGPPDVTLQTED-H-TEAFQGVFERSRLVQWFTEKCVP 321 (493)
Q Consensus 263 ~f~~~A~~l~~~~~~~f~~~~~-----------~~~~p~ivf~~~~-~-~~~y~g~~~~~~l~~wi~~~~~P 321 (493)
.|.++|..+.....+.++.... ...+|++++.+.+ . ...|.|..+.+.|.+|+....-+
T Consensus 183 ~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 183 EWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 8999999886324444443332 2238996655444 5 56777777779999999987766
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.80 E-value=2.4e-19 Score=147.81 Aligned_cols=100 Identities=25% Similarity=0.518 Sum_probs=90.8
Q ss_pred cEEcccccHHHHHcC-CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 119 VKYLRQNNFTEVLSQ-YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 119 v~~l~~~nf~~~l~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
|..+++++|++.+.+ +.+++|.|||+||++|+++.|.|.++++.+ .+.+.++.+||++++.+|++|+|+++||
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~------~~~~~~~~id~~~~~~~~~~~~i~~~P~ 75 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKAL------KGIVKVGAVDADVHQSLAQQYGVRGFPT 75 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHh------cCCceEEEEECcchHHHHHHCCCCccCE
Confidence 678999999997744 557999999999999999999999999988 4579999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+++|.+|......|.|.++.++|++|+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 76 IKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEEECCCCcceeecCCCCCHHHHHHHh
Confidence 999999955556899999999999997
No 26
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.79 E-value=4.5e-19 Score=164.71 Aligned_cols=108 Identities=28% Similarity=0.479 Sum_probs=96.5
Q ss_pred CCCcEEcccccHHHHHcC-----CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC
Q psy9502 116 TTRVKYLRQNNFTEVLSQ-----YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF 190 (493)
Q Consensus 116 ~~~v~~l~~~nf~~~l~~-----~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~ 190 (493)
.+.|++|+++||++.+.. +++|+|.|||+||++|+++.|.|+++++.+ .+.+.++.|||++++++|++|
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~------~~~v~~~~VD~~~~~~l~~~~ 102 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKAL------KGQVNVADLDATRALNLAKRF 102 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHc------CCCeEEEEecCcccHHHHHHc
Confidence 367999999999998743 479999999999999999999999999998 457999999999999999999
Q ss_pred ccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCC
Q psy9502 191 HITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230 (493)
Q Consensus 191 ~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~ 230 (493)
+|++|||+++|++|+... .+.|.++.++|.+|+.+....
T Consensus 103 ~I~~~PTl~~f~~G~~v~-~~~G~~s~e~L~~fi~~~~~~ 141 (224)
T PTZ00443 103 AIKGYPTLLLFDKGKMYQ-YEGGDRSTEKLAAFALGDFKK 141 (224)
T ss_pred CCCcCCEEEEEECCEEEE-eeCCCCCHHHHHHHHHHHHHh
Confidence 999999999999998654 456889999999999988753
No 27
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=9.5e-19 Score=146.15 Aligned_cols=101 Identities=22% Similarity=0.350 Sum_probs=88.9
Q ss_pred EEcccccHHH-HHc--CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 120 KYLRQNNFTE-VLS--QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 120 ~~l~~~nf~~-~l~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
..++.++|++ ++. .+++|+|.||||||++|+.+.|.|+++++++.+. ++.+++|||++++.++++++|.++|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-----~v~~~~vd~d~~~~l~~~~~V~~~P 81 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-----GVGIATVNAGHERRLARKLGAHSVP 81 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-----CceEEEEeccccHHHHHHcCCccCC
Confidence 3467788876 443 5689999999999999999999999999999532 6999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
|+++|++|+... .+.|.++.+.|.+||.+
T Consensus 82 t~~i~~~g~~~~-~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 82 AIVGIINGQVTF-YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEEEECCEEEE-EecCCCCHHHHHHHHhc
Confidence 999999997654 67899999999999976
No 28
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.78 E-value=9e-19 Score=144.52 Aligned_cols=101 Identities=33% Similarity=0.613 Sum_probs=89.3
Q ss_pred cEEcccccHHHHHcC-CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 119 VKYLRQNNFTEVLSQ-YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 119 v~~l~~~nf~~~l~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
|..|++++|++.+.+ +++++|+|||+||++|+.+.|.|+++++.+++. ..+.++++||+++ +++..+++.++||
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~-~~~~~~~~~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD----DNVVIAKMDATAN-DVPSEFVVDGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC----CCEEEEEEeCcch-hhhhhccCCCCCE
Confidence 788999999997744 589999999999999999999999999998542 2799999999997 6888999999999
Q ss_pred EEEEeCCe-eeeeecccCCCHHHHHHHH
Q psy9502 198 LKIIRNGL-ATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 198 l~~f~~g~-~~~~~y~G~~~~~~l~~fi 224 (493)
+++|++|. .....|.|.++.++|++||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99999987 3335799999999999986
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.78 E-value=1.4e-18 Score=143.45 Aligned_cols=101 Identities=28% Similarity=0.642 Sum_probs=92.4
Q ss_pred cEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccCc
Q psy9502 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKYP 196 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~P 196 (493)
|+.|++.+|++.++++++++|.|||+||++|+.+.|.+.++++.+... +.+.++.+||+. ++.++++++|+++|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED----GKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC----CceEEEEEECCCCccHHHHHhCCCcccc
Confidence 678999999999988899999999999999999999999999998542 479999999999 89999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
|+++|++|+... .|.|..+.+.+++|+
T Consensus 78 t~~~~~~g~~~~-~~~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVE-KYEGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeE-EeCCCCCHHHHHhhC
Confidence 999999998654 799999999999885
No 30
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.77 E-value=1.2e-18 Score=142.39 Aligned_cols=90 Identities=20% Similarity=0.458 Sum_probs=78.6
Q ss_pred cHHHHH--cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-CCccccccCccccCceEEEEe
Q psy9502 126 NFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-EEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 126 nf~~~l--~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
++.+++ ..+++++|.|||+||++|+++.|.|+++++.+. ++.++.||++ +++.++++|+|.++||+++|+
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~-------~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~ 80 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP-------QIRHLAIEESSIKPSLLSRYGVVGFPTILLFN 80 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc-------cCceEEEECCCCCHHHHHhcCCeecCEEEEEc
Confidence 344443 356899999999999999999999999999872 5788999999 889999999999999999999
Q ss_pred CCeeeeeecccCCCHHHHHHHH
Q psy9502 203 NGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 203 ~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+| .. .+|.|.++.++|.+|+
T Consensus 81 ~g-~~-~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 81 ST-PR-VRYNGTRTLDSLAAFY 100 (100)
T ss_pred CC-ce-eEecCCCCHHHHHhhC
Confidence 99 43 4799999999999985
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=4.6e-18 Score=141.70 Aligned_cols=105 Identities=27% Similarity=0.533 Sum_probs=95.8
Q ss_pred CCcEEcccccHHH-HHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccC
Q psy9502 117 TRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195 (493)
Q Consensus 117 ~~v~~l~~~nf~~-~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 195 (493)
..|+.+++++|.+ +++.+++++|.||++||++|+.+.|.|+++++.+ .+++.++.|||+.++.++++|+|.++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~~ 76 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY------QGKLTVAKLNIDQNPGTAPKYGIRGI 76 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHh------CCCcEEEEEECCCChhHHHhCCCCcC
Confidence 5689999999997 5667889999999999999999999999999988 45799999999999999999999999
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
||+++|++|+... .+.|..+.+.|..|+...+
T Consensus 77 Pt~~~~~~G~~~~-~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGEVAA-TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCeEEE-EecCCCCHHHHHHHHHHhc
Confidence 9999999998765 7889999999999998765
No 32
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=2e-18 Score=141.83 Aligned_cols=101 Identities=29% Similarity=0.607 Sum_probs=92.1
Q ss_pred cccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 122 l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
|++++|++++.++++++|.||++||++|+.+.|.|+++++.++.. +++.++.+||++++.+|++|+|+++|++++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD----PDIVLAKVDATAEKDLASRFGVSGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC----CceEEEEEEccchHHHHHhCCCCcCCEEEEe
Confidence 578899999888899999999999999999999999999998433 2699999999999999999999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
.+|.. ...|.|.++.+.|..||.++
T Consensus 77 ~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 99886 45799999999999999875
No 33
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.76 E-value=2.8e-18 Score=141.80 Aligned_cols=102 Identities=32% Similarity=0.640 Sum_probs=91.1
Q ss_pred cEEcccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-CccccccCccccCc
Q psy9502 119 VKYLRQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIRDFFHITKYP 196 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~P 196 (493)
|..|++++|++.+.+. ++++|.|||+||++|+++.|.|.++++.++.. +++.++.+||+. ++.+|++++|+++|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~~~~~~~~~~i~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE----DDVVIAKVDADEANKDLAKKYGVSGFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC----CCEEEEEEECCCcchhhHHhCCCCCcC
Confidence 6789999999988654 49999999999999999999999999998522 479999999999 99999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
++++|.+|......|.|.++.++|.+|+
T Consensus 78 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 9999998855455799999999999985
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.76 E-value=4.3e-18 Score=138.42 Aligned_cols=94 Identities=29% Similarity=0.490 Sum_probs=83.9
Q ss_pred ccHHHHH-cC-CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe
Q psy9502 125 NNFTEVL-SQ-YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 125 ~nf~~~l-~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
++|++.+ ++ +++++|.|||+||++|+++.|.+++++..+ .+.+.+++|||++++.++++|+|.++||+++|+
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~------~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 74 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEY------QGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFA 74 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHh------CCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEe
Confidence 3677766 34 569999999999999999999999999988 457899999999999999999999999999999
Q ss_pred CCeeeeeecccCCCHHHHHHHHH
Q psy9502 203 NGLATRSEYRSQRTTEALLNFIA 225 (493)
Q Consensus 203 ~g~~~~~~y~G~~~~~~l~~fi~ 225 (493)
+|+... .|.|.++.+.|..|+.
T Consensus 75 ~g~~~~-~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 75 AGQPVD-GFQGAQPEEQLRQMLD 96 (96)
T ss_pred CCEEee-eecCCCCHHHHHHHhC
Confidence 998765 7999999999999873
No 35
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.5e-18 Score=160.77 Aligned_cols=107 Identities=26% Similarity=0.543 Sum_probs=99.1
Q ss_pred CCcEEcccccHHHH-HcC-C-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc
Q psy9502 117 TRVKYLRQNNFTEV-LSQ-Y-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT 193 (493)
Q Consensus 117 ~~v~~l~~~nf~~~-l~~-~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 193 (493)
..|+++|+.||... +.+ . .+|||+||||||++|+.+.|.+++++..+ .|++.+++|||++++.++.+|||+
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~------~G~f~LakvN~D~~p~vAaqfgiq 96 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEY------KGKFKLAKVNCDAEPMVAAQFGVQ 96 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHh------CCceEEEEecCCcchhHHHHhCcC
Confidence 34999999999985 433 3 49999999999999999999999999999 789999999999999999999999
Q ss_pred cCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCC
Q psy9502 194 KYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230 (493)
Q Consensus 194 ~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~ 230 (493)
+.||+++|.+|+.+. .|.|....+.|.+|+.+....
T Consensus 97 sIPtV~af~dGqpVd-gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 97 SIPTVYAFKDGQPVD-GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred cCCeEEEeeCCcCcc-ccCCCCcHHHHHHHHHHhcCh
Confidence 999999999999987 899999999999999998876
No 36
>PRK10996 thioredoxin 2; Provisional
Probab=99.75 E-value=1.1e-17 Score=145.32 Aligned_cols=105 Identities=22% Similarity=0.428 Sum_probs=96.9
Q ss_pred CCCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccC
Q psy9502 116 TTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195 (493)
Q Consensus 116 ~~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 195 (493)
++.++.++..+|+++++++++++|.|||+||++|+++.|.|.++++.+ .+.+.+++||++++++++++|+|.++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~------~~~v~~~~vd~~~~~~l~~~~~V~~~ 107 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAER------SGKVRFVKVNTEAERELSARFRIRSI 107 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHh------CCCeEEEEEeCCCCHHHHHhcCCCcc
Confidence 456888999999999988999999999999999999999999999887 45799999999999999999999999
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
||+++|++|+... .+.|..+.+.|.+|+.+.
T Consensus 108 Ptlii~~~G~~v~-~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 108 PTIMIFKNGQVVD-MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEECCEEEE-EEcCCCCHHHHHHHHHHh
Confidence 9999999998865 789999999999999875
No 37
>PHA02278 thioredoxin-like protein
Probab=99.74 E-value=9.1e-18 Score=137.30 Aligned_cols=93 Identities=24% Similarity=0.329 Sum_probs=82.3
Q ss_pred cccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC----ccccccCccccCceEE
Q psy9502 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE----PRIRDFFHITKYPTLK 199 (493)
Q Consensus 124 ~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Ptl~ 199 (493)
-++|.+.+.++++++|.|||+||++|+.+.|.++++++.+ .+++.|++||++.+ ++++++|+|.+.||++
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~------~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i 77 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESG------DIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLI 77 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhh------cCCceEEEEECCccccccHHHHHHCCCccccEEE
Confidence 4678888888899999999999999999999999999875 23578999999986 5899999999999999
Q ss_pred EEeCCeeeeeecccCCCHHHHHHH
Q psy9502 200 IIRNGLATRSEYRSQRTTEALLNF 223 (493)
Q Consensus 200 ~f~~g~~~~~~y~G~~~~~~l~~f 223 (493)
+|++|+... +..|..+.+.|.++
T Consensus 78 ~fk~G~~v~-~~~G~~~~~~l~~~ 100 (103)
T PHA02278 78 GYKDGQLVK-KYEDQVTPMQLQEL 100 (103)
T ss_pred EEECCEEEE-EEeCCCCHHHHHhh
Confidence 999998876 78898888888775
No 38
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.74 E-value=1.6e-17 Score=137.11 Aligned_cols=97 Identities=30% Similarity=0.624 Sum_probs=85.3
Q ss_pred ccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCC
Q psy9502 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204 (493)
Q Consensus 125 ~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g 204 (493)
++|+++ .+++.++|.|||+||++|+.+.|.|+++++.++... ..+.++.+||++++.++++|+|.++||+++|.+|
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~---~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSG---SPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcC---CcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 678875 457899999999999999999999999999986542 3699999999999999999999999999999877
Q ss_pred eeeeeecccCCCHHHHHHHHHHH
Q psy9502 205 LATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 205 ~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
.. ..|.|.++.+.|.+|+++.
T Consensus 83 ~~--~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 LA--YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred Cc--eeecCCCCHHHHHHHHHhh
Confidence 43 3699999999999999873
No 39
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.74 E-value=1.8e-17 Score=155.32 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=122.1
Q ss_pred cceeeeehhH---HHHHHHhhhhhhhhhhhccCchHHHHHhh--hcCCCccc----------ccceEEEecccccccCcC
Q psy9502 15 VEWVNRKTYS---VIALVLANRESKILLRAAQGLEDWFELLE--ECTMTSKE----------RRKALRLYGNAFYKDHSS 79 (493)
Q Consensus 15 ~~~~~v~Fya---p~~~~~~C~hCk~l~p~~~~~~~~~~~~~--~~~i~~~~----------~~~~~~~~~~~~~~~~~~ 79 (493)
++..++-|++ || |+||+.++|.++++++.+..+. .+.++..+ ...|+..+++.+= ....
T Consensus 19 ~~~~i~~f~~~~a~w-----C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~ 92 (215)
T TIGR02187 19 NPVEIVVFTDNDKEG-----CQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGI 92 (215)
T ss_pred CCeEEEEEcCCCCCC-----CCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEE
Confidence 4455677999 99 9999999999998865543221 12222101 3444544433320 1111
Q ss_pred CCCCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEcccccHHHHHcCCCe-EEEEEEcCCChhHhhhhHHHHH
Q psy9502 80 TMGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKL-AVVNFYADWCRFCHLLKPVLEE 158 (493)
Q Consensus 80 ~~~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l~~~~~-~lV~Fya~wC~~C~~l~p~~~~ 158 (493)
...+..+.+.+.+|+...+ +..+ ....|+..+.+.+-...++ .++.||++||++|+.+.|.+++
T Consensus 93 ~~~G~~~~~~l~~~i~~~~-~~~~--------------~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 93 RYTGIPAGYEFAALIEDIV-RVSQ--------------GEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHK 157 (215)
T ss_pred EEeecCCHHHHHHHHHHHH-HhcC--------------CCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence 1222345667888888764 2211 1123555555544433444 4555999999999999999998
Q ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 159 TAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 159 ~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
++... +.+.+..||.+++++++++|+|.++||++++.+|. .+.|....++|.+|+.+
T Consensus 158 l~~~~-------~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 158 FALAN-------DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHhc-------CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 88763 47999999999999999999999999999998775 28899999999999975
No 40
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.72 E-value=1.8e-17 Score=168.68 Aligned_cols=107 Identities=21% Similarity=0.433 Sum_probs=92.8
Q ss_pred CCCCcEEcccccHHHHHc---CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-ccc-cc
Q psy9502 115 NTTRVKYLRQNNFTEVLS---QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR-DF 189 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l~---~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-~l~-~~ 189 (493)
.+..|+.|+.+||++++. .+++|||.||||||++|+.+.|.|+++|++++.. .+.|++|||+.+. .++ ++
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-----~v~~~kVdvD~~~~~~~~~~ 423 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-----GVKVAKFRADGDQKEFAKQE 423 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-----CcEEEEEECCCCccHHHHHH
Confidence 345799999999999875 6789999999999999999999999999998432 4899999999764 454 68
Q ss_pred CccccCceEEEEeCCeeeeeecc-cCCCHHHHHHHHHH
Q psy9502 190 FHITKYPTLKIIRNGLATRSEYR-SQRTTEALLNFIAE 226 (493)
Q Consensus 190 ~~i~~~Ptl~~f~~g~~~~~~y~-G~~~~~~l~~fi~~ 226 (493)
|+|++|||+++|++|...++.|. |.|+.++|+.||+.
T Consensus 424 ~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 424 LQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred cCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999999999976556797 58999999999975
No 41
>PLN02309 5'-adenylylsulfate reductase
Probab=99.72 E-value=2e-17 Score=168.34 Aligned_cols=108 Identities=24% Similarity=0.479 Sum_probs=95.5
Q ss_pred CCCCcEEcccccHHHHH---cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-CCccccc-c
Q psy9502 115 NTTRVKYLRQNNFTEVL---SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-EEPRIRD-F 189 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l---~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-~~~~l~~-~ 189 (493)
.+..|+.|+.+||++++ +.+++|||.||||||++|+.+.|.|+++|+.+... ++.|++|||+ .+..+|. +
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-----~V~f~kVD~d~~~~~la~~~ 417 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-----GVKVAKFRADGDQKEFAKQE 417 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-----CeEEEEEECCCcchHHHHhh
Confidence 34579999999999976 46789999999999999999999999999998532 6999999999 7788886 6
Q ss_pred CccccCceEEEEeCCeeeeeeccc-CCCHHHHHHHHHHH
Q psy9502 190 FHITKYPTLKIIRNGLATRSEYRS-QRTTEALLNFIAEE 227 (493)
Q Consensus 190 ~~i~~~Ptl~~f~~g~~~~~~y~G-~~~~~~l~~fi~~~ 227 (493)
|+|++||||++|++|...++.|.| .|+.++|+.||+..
T Consensus 418 ~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 418 LQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999999999876678985 69999999999864
No 42
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.72 E-value=1.6e-17 Score=136.80 Aligned_cols=84 Identities=20% Similarity=0.314 Sum_probs=74.0
Q ss_pred cccHHHHHc--CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 124 QNNFTEVLS--QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 124 ~~nf~~~l~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
.++|++.+. ++++++|.|||+||++|+.+.|.++++|.++ .+.+.|++||++++++++++|+|.+.||+++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~------~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~f 75 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDV------SNFAVIYLVDIDEVPDFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHc------cCceEEEEEECCCCHHHHHHcCCCCCCEEEEE
Confidence 456788774 4679999999999999999999999999998 45689999999999999999999999999999
Q ss_pred eCCeeeeeecccC
Q psy9502 202 RNGLATRSEYRSQ 214 (493)
Q Consensus 202 ~~g~~~~~~y~G~ 214 (493)
++|+... ...|.
T Consensus 76 k~G~~v~-~~~G~ 87 (114)
T cd02954 76 FRNKHMK-IDLGT 87 (114)
T ss_pred ECCEEEE-EEcCC
Confidence 9999876 44443
No 43
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.72 E-value=4.1e-17 Score=136.81 Aligned_cols=101 Identities=25% Similarity=0.395 Sum_probs=85.0
Q ss_pred CcEEcccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCcccc
Q psy9502 118 RVKYLRQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITK 194 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~ 194 (493)
.++.|+.++|++.+.++ ++++|.|||+||++|+.+.|.|+++++.+++. .+.+.++.|||+. +..+|++|+|++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~---~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW---RPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc---CCceEEEEEeccchhhHHHHHhCCCCC
Confidence 57899999999987554 69999999999999999999999999999655 2479999999964 568999999999
Q ss_pred CceEEEEeCCeeee---eecccC-CCHHHHH
Q psy9502 195 YPTLKIIRNGLATR---SEYRSQ-RTTEALL 221 (493)
Q Consensus 195 ~Ptl~~f~~g~~~~---~~y~G~-~~~~~l~ 221 (493)
+||+++|++|.... ..|.|. |.++++.
T Consensus 79 ~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 79 YPTLRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred CCEEEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99999999887532 457776 7666653
No 44
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.71 E-value=4.5e-17 Score=133.92 Aligned_cols=97 Identities=22% Similarity=0.339 Sum_probs=84.8
Q ss_pred cccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 122 l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
-+.++|+++++++++++|+|||+||++|+.+.|.++++++.++. ..+.|+.+|++ +++++++|+|+++||+++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-----~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-----DLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-----CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 46788999998899999999999999999999999999998742 25889999999 6789999999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
++|+... +..| .+.+.+.++|.+
T Consensus 79 ~~g~~~~-~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELVA-VIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEEEE-EEec-CChHHHHHHHhh
Confidence 9998775 5666 488889888865
No 45
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.71 E-value=2.8e-17 Score=134.17 Aligned_cols=100 Identities=35% Similarity=0.675 Sum_probs=89.5
Q ss_pred EcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEE
Q psy9502 121 YLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKI 200 (493)
Q Consensus 121 ~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~ 200 (493)
.|+.++|.+.+.++++++|.||++||++|+.+.|.|+++++.++. .+.+.++.|||+++..+|++|+|+++||+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG----DGKVVVAKVDCTANNDLCSEYGVRGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc----CCceEEEEeeccchHHHHHhCCCCCCCEEEE
Confidence 578899999998888999999999999999999999999999852 2479999999999999999999999999999
Q ss_pred EeCCeeeeeecccCCCHHHHHHHH
Q psy9502 201 IRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 201 f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
|.+|.....+|.|.++.++|.+|+
T Consensus 78 ~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccCCCCcCHHHHHhhC
Confidence 998843334799999999999885
No 46
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=9e-17 Score=140.48 Aligned_cols=93 Identities=19% Similarity=0.419 Sum_probs=81.8
Q ss_pred CCCCcEEcccccHHHHHcC--CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCcc
Q psy9502 115 NTTRVKYLRQNNFTEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHI 192 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l~~--~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 192 (493)
....+..++.++|++.+.. +++|+|.|||+||++|+++.|.|+++++.+.. .++.|++|||+++++++++|+|
T Consensus 26 ~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-----~~v~f~~VDvd~~~~la~~~~V 100 (152)
T cd02962 26 GPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-----NNLKFGKIDIGRFPNVAEKFRV 100 (152)
T ss_pred CCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-----CCeEEEEEECCCCHHHHHHcCc
Confidence 3468999999999997743 46999999999999999999999999998832 2699999999999999999999
Q ss_pred cc------CceEEEEeCCeeeeeeccc
Q psy9502 193 TK------YPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 193 ~~------~Ptl~~f~~g~~~~~~y~G 213 (493)
++ +||+++|++|+... ++.|
T Consensus 101 ~~~~~v~~~PT~ilf~~Gk~v~-r~~G 126 (152)
T cd02962 101 STSPLSKQLPTIILFQGGKEVA-RRPY 126 (152)
T ss_pred eecCCcCCCCEEEEEECCEEEE-EEec
Confidence 88 99999999999876 5555
No 47
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.70 E-value=9.8e-17 Score=131.17 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=89.0
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCC--ChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCcccc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADW--CRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~w--C~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 194 (493)
.+...++..||++.+..+..++|.|||+| |++|+.+.|.++++|+++ .+.+.|++||+++++.++.+|+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~------~~~v~f~kVdid~~~~la~~f~V~s 83 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF------PGRFRAAVVGRADEQALAARFGVLR 83 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHC------CCcEEEEEEECCCCHHHHHHcCCCc
Confidence 34567999999999988899999999997 999999999999999998 5579999999999999999999999
Q ss_pred CceEEEEeCCeeeeeecccCCCHHHHH
Q psy9502 195 YPTLKIIRNGLATRSEYRSQRTTEALL 221 (493)
Q Consensus 195 ~Ptl~~f~~g~~~~~~y~G~~~~~~l~ 221 (493)
.||+++|++|+... ...|..+.+++.
T Consensus 84 IPTli~fkdGk~v~-~~~G~~~~~e~~ 109 (111)
T cd02965 84 TPALLFFRDGRYVG-VLAGIRDWDEYV 109 (111)
T ss_pred CCEEEEEECCEEEE-EEeCccCHHHHh
Confidence 99999999998876 788988877764
No 48
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.69 E-value=1.3e-16 Score=131.37 Aligned_cols=95 Identities=18% Similarity=0.221 Sum_probs=80.3
Q ss_pred ccccHHHHHcC--CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc---cccccCccccCce
Q psy9502 123 RQNNFTEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP---RIRDFFHITKYPT 197 (493)
Q Consensus 123 ~~~nf~~~l~~--~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt 197 (493)
+.++|++.+.+ +++++|.|||+||++|+.+.|.++++++.+ +.+.|++||++++. +++++|+|+++||
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-------~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt 74 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-------NDVVFLLVNGDENDSTMELCRREKIIEVPH 74 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-------CCCEEEEEECCCChHHHHHHHHcCCCcCCE
Confidence 35678887744 689999999999999999999999999887 26899999999874 7999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
+++|++|+... ++.| ...+.|.+-+..
T Consensus 75 ~~~~~~G~~v~-~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 75 FLFYKDGEKIH-EEEG-IGPDELIGDVLY 101 (103)
T ss_pred EEEEeCCeEEE-EEeC-CCHHHHHHHHHh
Confidence 99999998765 7888 455677666543
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.69 E-value=1.9e-16 Score=129.65 Aligned_cols=100 Identities=32% Similarity=0.581 Sum_probs=88.7
Q ss_pred cccccHHHHHcC-CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEE
Q psy9502 122 LRQNNFTEVLSQ-YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKI 200 (493)
Q Consensus 122 l~~~nf~~~l~~-~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~ 200 (493)
++.++|.+.+.+ +++++|.||++||++|+.+.|.++++++.+ ++++.++.|||++++.++++|+|.++||+++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~ 74 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEY------EGKVKFVKLNVDENPDIAAKYGIRSIPTLLL 74 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHh------cCCeEEEEEECCCCHHHHHHcCCCcCCEEEE
Confidence 456788887755 459999999999999999999999999887 4479999999999999999999999999999
Q ss_pred EeCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 201 IRNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 201 f~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
|++|+... .+.|..+.+.+.+|+++.+
T Consensus 75 ~~~g~~~~-~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 75 FKNGKEVD-RSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeCCcEee-eecCCCCHHHHHHHHHhhC
Confidence 99998764 6889999999999998753
No 50
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.66 E-value=2.2e-16 Score=132.35 Aligned_cols=89 Identities=25% Similarity=0.372 Sum_probs=79.6
Q ss_pred CCcEEcccccHHHHHcCC---CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc
Q psy9502 117 TRVKYLRQNNFTEVLSQY---KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT 193 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~---~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 193 (493)
+.+..+++++|.+.+.+. ++++|.||||||++|+.+.|.++++|..+ +++.|++||++++ .++++|+|+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~-------~~v~f~~vd~~~~-~l~~~~~i~ 75 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKY-------PETKFVKINAEKA-FLVNYLDIK 75 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHC-------CCcEEEEEEchhh-HHHHhcCCC
Confidence 568899999999977554 79999999999999999999999999986 2689999999998 999999999
Q ss_pred cCceEEEEeCCeeeeeecccC
Q psy9502 194 KYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 194 ~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
++||+++|++|+... ++.|.
T Consensus 76 ~~Pt~~~f~~G~~v~-~~~G~ 95 (113)
T cd02957 76 VLPTLLVYKNGELID-NIVGF 95 (113)
T ss_pred cCCEEEEEECCEEEE-EEecH
Confidence 999999999999876 56663
No 51
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.65 E-value=9.4e-16 Score=128.20 Aligned_cols=100 Identities=19% Similarity=0.297 Sum_probs=85.6
Q ss_pred CCcEEccc-ccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccC
Q psy9502 117 TRVKYLRQ-NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195 (493)
Q Consensus 117 ~~v~~l~~-~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 195 (493)
+.+..+++ ++|.+.+.++++++|.||++||++|+.+.|.++++++.+ +++.|.+||++++++++++|+|.+.
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~-------~~i~f~~Vd~~~~~~l~~~~~v~~v 76 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKH-------LETKFIKVNAEKAPFLVEKLNIKVL 76 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHc-------CCCEEEEEEcccCHHHHHHCCCccC
Confidence 56888888 899999988899999999999999999999999999876 2689999999999999999999999
Q ss_pred ceEEEEeCCeeeeeeccc--------CCCHHHHHHHH
Q psy9502 196 PTLKIIRNGLATRSEYRS--------QRTTEALLNFI 224 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G--------~~~~~~l~~fi 224 (493)
||+++|++|+... ++.| +.+.+++-.|+
T Consensus 77 Pt~l~fk~G~~v~-~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 77 PTVILFKNGKTVD-RIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred CEEEEEECCEEEE-EEECccccCCCCCCCHHHHHHHh
Confidence 9999999998764 3333 34555555554
No 52
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.64 E-value=9.2e-15 Score=136.92 Aligned_cols=182 Identities=13% Similarity=0.206 Sum_probs=125.7
Q ss_pred ccHHHHHcCCCeEEEEEEc---CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 125 NNFTEVLSQYKLAVVNFYA---DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 125 ~nf~~~l~~~~~~lV~Fya---~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
..|.+-+. +...++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|.+++++++++|+|.++||+++|
T Consensus 11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~-----~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f 84 (215)
T TIGR02187 11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK-----LKLEIYDFDTPEDKEEAEKYGVERVPTTIIL 84 (215)
T ss_pred HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC-----ceEEEEecCCcccHHHHHHcCCCccCEEEEE
Confidence 33333333 4556777988 9999999999999999998721 1366777777799999999999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHHHcC--CCcccCCC--chhhhccCCc-eEEEEecCCCCch---hHHHHHHHhhhcc
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAEELK--DPVMDLEE--APKFNVHDKT-LMLGRFNSKNSPE---YELFSRVCSTFNH 273 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~~~~--~~~~~i~s--~~~l~~~~~~-~vv~ff~~~~~~~---~~~f~~~A~~l~~ 273 (493)
++|.....+|.|..+.+.+.+|+...+. .....+.. .+.++.+.++ .++.|+.++|..+ .+.+.+++.. .
T Consensus 85 ~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~- 162 (215)
T TIGR02187 85 EEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALA-N- 162 (215)
T ss_pred eCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHh-c-
Confidence 9998764579999999999999988753 22223321 2334444444 4555888887644 3444555544 2
Q ss_pred CCcceEeeec-----------cCCCCCceEEecCCCcccccCcCChHHHHHHHHH
Q psy9502 274 FDVCKCFARF-----------RHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTE 317 (493)
Q Consensus 274 ~~~~~f~~~~-----------~~~~~p~ivf~~~~~~~~y~g~~~~~~l~~wi~~ 317 (493)
+++.+.... +....|++++..++. .+.|....++|.+|+.+
T Consensus 163 -~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 163 -DKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -CceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE--EEECCCCHHHHHHHHHh
Confidence 456654422 223489976655442 38888777999999875
No 53
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.63 E-value=7e-16 Score=127.35 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=80.6
Q ss_pred ccHHHHHcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEeCCC----CccccccCccccCce
Q psy9502 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQINCDE----EPRIRDFFHITKYPT 197 (493)
Q Consensus 125 ~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt 197 (493)
+.|.++++++++++|.|||+||++|+++.|.+ .++++.+. +++.++.||+++ ...++++|+|+++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK------KDVVLLRADWTKNDPEITALLKRFGVFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh------CCeEEEEEecCCCCHHHHHHHHHcCCCCCCE
Confidence 46888888899999999999999999999998 67887772 379999999987 468899999999999
Q ss_pred EEEEe--CCeeeeeecccCCCHHHHHHHH
Q psy9502 198 LKIIR--NGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 198 l~~f~--~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+++|. +|+.. ..+.|.++.++|.+++
T Consensus 76 i~~~~~~~g~~~-~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEPEP-LRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCCCC-cccccccCHHHHHHHh
Confidence 99998 45544 4789999999999886
No 54
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.62 E-value=2.2e-15 Score=125.20 Aligned_cols=111 Identities=41% Similarity=0.628 Sum_probs=93.1
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRL 402 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi 402 (493)
|+++|.+|+..+++.+.|..++|+++++.+.++.....+++.+..|+++++|+++|+..+.+. +++||++..++|+++|
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~-~~~fgl~~~~~P~i~i 79 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHP-LLHLGKTPADLPVIAI 79 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhH-HHHcCCCHhHCCEEEE
Confidence 689999999999999999988888655555666666666644434899999999999999998 9999999889999999
Q ss_pred EeCCccccCCCCCCCCCChhHHHHHHHHHHcCC
Q psy9502 403 DDYKHIYRLPSLITLAENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 403 ~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~sGk 435 (493)
.+..+++.|+. ..+..++++|++|++++++||
T Consensus 80 ~~~~~~~Ky~~-~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 80 DSFRHMYLFPD-FEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EcchhcCcCCC-CccccCHHHHHHHHHHHhcCC
Confidence 99887666653 356678899999999999996
No 55
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.62 E-value=2.3e-15 Score=122.51 Aligned_cols=93 Identities=30% Similarity=0.499 Sum_probs=80.1
Q ss_pred cccHHHHHcCC--CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 124 QNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 124 ~~nf~~~l~~~--~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
.++|++++... ++++|.||++||++|+++.|.++++++.+ .+.+.+++||++++++++++|+|+++||+++|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~------~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 75 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEA------FPSVLFLSIEAEELPEISEKFEITAVPTFVFF 75 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHh------CCceEEEEEccccCHHHHHhcCCccccEEEEE
Confidence 46788888666 89999999999999999999999999987 24899999999999999999999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHH
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
.+|+... .+.|. +.++|.+.|
T Consensus 76 ~~g~~~~-~~~g~-~~~~l~~~~ 96 (97)
T cd02984 76 RNGTIVD-RVSGA-DPKELAKKV 96 (97)
T ss_pred ECCEEEE-EEeCC-CHHHHHHhh
Confidence 9998764 55664 566666654
No 56
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.61 E-value=4.4e-15 Score=127.15 Aligned_cols=101 Identities=16% Similarity=0.295 Sum_probs=82.6
Q ss_pred ccccHHHHH--cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE-
Q psy9502 123 RQNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK- 199 (493)
Q Consensus 123 ~~~nf~~~l--~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~- 199 (493)
+..+|++.+ ..+++++|.|||+||++|+.+.|.++++|+++ .+.+.|++||+++++++++.|+|++.||++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~------~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~ 83 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETI------KNFAVIYLVDITEVPDFNTMYELYDPCTVMF 83 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHc------CCceEEEEEECCCCHHHHHHcCccCCCcEEE
Confidence 357888877 35679999999999999999999999999998 446889999999999999999999877666
Q ss_pred EEeCCeeeeeeccc--------CCCHHHHHHHHHHHcC
Q psy9502 200 IIRNGLATRSEYRS--------QRTTEALLNFIAEELK 229 (493)
Q Consensus 200 ~f~~g~~~~~~y~G--------~~~~~~l~~fi~~~~~ 229 (493)
+|++|+.......| ..+.++|++-+.....
T Consensus 84 ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~ 121 (142)
T PLN00410 84 FFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 121 (142)
T ss_pred EEECCeEEEEEecccccccccccCCHHHHHHHHHHHHH
Confidence 99999854335677 4566777776665543
No 57
>KOG1731|consensus
Probab=99.60 E-value=2.7e-15 Score=150.86 Aligned_cols=123 Identities=20% Similarity=0.407 Sum_probs=97.5
Q ss_pred CCCccCCCCCCCCCCCCcEEcccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeC
Q psy9502 102 NPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180 (493)
Q Consensus 102 ~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~ 180 (493)
.+...+.|.-++ .+++|+.|+.++|+.++.+. +.+||.||++|||||++++|+|+++|+.+.... +-|.++.|||
T Consensus 25 ~a~~~~~ptLy~-~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~---~vv~vaaVdC 100 (606)
T KOG1731|consen 25 SALGSSNPTLYS-PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWR---PVVRVAAVDC 100 (606)
T ss_pred ccccCCCCcccC-CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhccc---ceeEEEEeec
Confidence 333334444344 44889999999999987555 599999999999999999999999999999985 4899999999
Q ss_pred C--CCccccccCccccCceEEEEeCCeee---eeecccCCCHHHHHHHHHHHc
Q psy9502 181 D--EEPRIRDFFHITKYPTLKIIRNGLAT---RSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 181 ~--~~~~l~~~~~i~~~Ptl~~f~~g~~~---~~~y~G~~~~~~l~~fi~~~~ 228 (493)
. .|..+|++|+|++||||++|..+... ...+.|.....++.+.+.+.+
T Consensus 101 A~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 101 ADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred cchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 6 46789999999999999999876433 124566666667766666544
No 58
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.60 E-value=7.4e-15 Score=127.98 Aligned_cols=98 Identities=20% Similarity=0.328 Sum_probs=83.1
Q ss_pred ccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccCceEEEEe
Q psy9502 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 125 ~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Ptl~~f~ 202 (493)
..|++.+..+++++|.|||+||++|+.+.|.+.++++.+. +.+.|+.||++. ...++++|+|.++||+++|.
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~------~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~ 84 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG------DQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLD 84 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc------cCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEEC
Confidence 4677888889999999999999999999999999999883 356667666654 35789999999999999995
Q ss_pred -CCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 203 -NGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 203 -~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+|+... .+.|..+.+.|.+++.+.+.
T Consensus 85 ~~G~~v~-~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 85 REGNEEG-QSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCCCEEE-EEeCCCCHHHHHHHHHHHHc
Confidence 677665 78899999999999998775
No 59
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.59 E-value=8.6e-15 Score=119.17 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=80.3
Q ss_pred HHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeee
Q psy9502 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRS 209 (493)
Q Consensus 130 ~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~ 209 (493)
+.+++++++|.||++||+.|+.+.|.++++++.+ .+++.++.+|++++++++++++|.++||+++|++|+...
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~------~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEF------DGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHh------CCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 3466789999999999999999999999999887 347999999999999999999999999999999988764
Q ss_pred ecccCCCHHHHHHHHH
Q psy9502 210 EYRSQRTTEALLNFIA 225 (493)
Q Consensus 210 ~y~G~~~~~~l~~fi~ 225 (493)
.+.|..+.+.|.+|++
T Consensus 82 ~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 EISGVKMKSEYREFIE 97 (97)
T ss_pred EEeCCccHHHHHHhhC
Confidence 7999999999998873
No 60
>PTZ00051 thioredoxin; Provisional
Probab=99.59 E-value=5.6e-15 Score=120.50 Aligned_cols=92 Identities=32% Similarity=0.589 Sum_probs=79.5
Q ss_pred EEcc-cccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceE
Q psy9502 120 KYLR-QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTL 198 (493)
Q Consensus 120 ~~l~-~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl 198 (493)
.+++ .++|.++++.++.++|.||++||++|+.+.|.|+++++.+ +++.++.||++++..++++|+|.++||+
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~-------~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 75 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY-------TKMVFVKVDVDELSEVAEKENITSMPTF 75 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc-------CCcEEEEEECcchHHHHHHCCCceeeEE
Confidence 4444 4678889988899999999999999999999999999865 3689999999999999999999999999
Q ss_pred EEEeCCeeeeeecccCCCHHHH
Q psy9502 199 KIIRNGLATRSEYRSQRTTEAL 220 (493)
Q Consensus 199 ~~f~~g~~~~~~y~G~~~~~~l 220 (493)
++|++|+... .+.|. ..++|
T Consensus 76 ~~~~~g~~~~-~~~G~-~~~~~ 95 (98)
T PTZ00051 76 KVFKNGSVVD-TLLGA-NDEAL 95 (98)
T ss_pred EEEeCCeEEE-EEeCC-CHHHh
Confidence 9999998875 67785 44444
No 61
>KOG0907|consensus
Probab=99.58 E-value=7.4e-15 Score=120.18 Aligned_cols=86 Identities=29% Similarity=0.498 Sum_probs=74.0
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeec
Q psy9502 132 SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEY 211 (493)
Q Consensus 132 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y 211 (493)
.++++++|.|||+||++|+.+.|.+.++|.++ . ++.|.+||+++..+++++++|...||+++|++|+... ++
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y------~-~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~-~~ 90 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKY------P-DVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD-EV 90 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHC------C-CCEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE-EE
Confidence 33589999999999999999999999999998 3 4999999999999999999999999999999999876 67
Q ss_pred ccCCCHHHHHHHHHH
Q psy9502 212 RSQRTTEALLNFIAE 226 (493)
Q Consensus 212 ~G~~~~~~l~~fi~~ 226 (493)
-|... +.+.+.+.+
T Consensus 91 vGa~~-~~l~~~i~~ 104 (106)
T KOG0907|consen 91 VGANK-AELEKKIAK 104 (106)
T ss_pred ecCCH-HHHHHHHHh
Confidence 77533 366555543
No 62
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.58 E-value=1e-14 Score=119.15 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=72.0
Q ss_pred ccHHHHHc--CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe
Q psy9502 125 NNFTEVLS--QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 125 ~nf~~~l~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
+.|++.+. ++++++|.|+|+||++|+.+.|.++++|++++ +.+.|++||.++.++++++|+|+.-||+++|+
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~------~~~~f~kVDVDev~dva~~y~I~amPtfvffk 76 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS------KMASIYLVDVDKVPVYTQYFDISYIPSTIFFF 76 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc------CceEEEEEeccccHHHHHhcCceeCcEEEEEE
Confidence 45777553 47899999999999999999999999999982 23999999999999999999999999999999
Q ss_pred CCeeeeeec
Q psy9502 203 NGLATRSEY 211 (493)
Q Consensus 203 ~g~~~~~~y 211 (493)
+|+.....|
T Consensus 77 ngkh~~~d~ 85 (114)
T cd02986 77 NGQHMKVDY 85 (114)
T ss_pred CCcEEEEec
Confidence 999877666
No 63
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.55 E-value=3e-14 Score=128.32 Aligned_cols=102 Identities=22% Similarity=0.264 Sum_probs=85.9
Q ss_pred CCCcEEccc-ccHHHHHcCC---CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc
Q psy9502 116 TTRVKYLRQ-NNFTEVLSQY---KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH 191 (493)
Q Consensus 116 ~~~v~~l~~-~nf~~~l~~~---~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 191 (493)
-+.|..++. ++|.+.+... .+++|.|||+||++|+.+.|.++++|..+ +.+.|++||++++ .++.+|+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~-------~~vkF~kVd~d~~-~l~~~f~ 132 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEY-------PAVKFCKIRASAT-GASDEFD 132 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHC-------CCeEEEEEeccch-hhHHhCC
Confidence 478999999 9999987543 39999999999999999999999999886 3799999999987 8999999
Q ss_pred cccCceEEEEeCCeeeeeeccc-------CCCHHHHHHHHHH
Q psy9502 192 ITKYPTLKIIRNGLATRSEYRS-------QRTTEALLNFIAE 226 (493)
Q Consensus 192 i~~~Ptl~~f~~g~~~~~~y~G-------~~~~~~l~~fi~~ 226 (493)
|...||+++|++|+... .+.| ..+.+.|-.|+.+
T Consensus 133 v~~vPTlllyk~G~~v~-~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 133 TDALPALLVYKGGELIG-NFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCCCEEEEEECCEEEE-EEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999999998764 3322 3566677766654
No 64
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.55 E-value=3.6e-14 Score=113.52 Aligned_cols=92 Identities=29% Similarity=0.582 Sum_probs=82.7
Q ss_pred ccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCC
Q psy9502 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204 (493)
Q Consensus 125 ~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g 204 (493)
++|++.+..+++++|.||++||++|+.+.+.+.++++.. +++.++.+||+.+..+++++++.++||+++|.+|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g 73 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEEY-------PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNG 73 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHHC-------CCceEEEEECCCChhHHHhcCcccccEEEEEECC
Confidence 367788877799999999999999999999999998871 3799999999999999999999999999999999
Q ss_pred eeeeeecccCCCHHHHHHHH
Q psy9502 205 LATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 205 ~~~~~~y~G~~~~~~l~~fi 224 (493)
.... .+.|..+.+.|.+|+
T Consensus 74 ~~~~-~~~g~~~~~~l~~~i 92 (93)
T cd02947 74 KEVD-RVVGADPKEELEEFL 92 (93)
T ss_pred EEEE-EEecCCCHHHHHHHh
Confidence 8665 788988889998887
No 65
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.51 E-value=9.8e-14 Score=117.42 Aligned_cols=100 Identities=17% Similarity=0.207 Sum_probs=82.0
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-----------c
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-----------R 185 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-----------~ 185 (493)
.....++.+.|.+.+.+++.++|+|+++||++|+++.|.+.+++++. ++.+..||.+.+. +
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--------~~~~y~vdvd~~~~~~~~~~~~~~~ 77 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT--------KAPIYYIDSENNGSFEMSSLNDLTA 77 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc--------CCcEEEEECCCccCcCcccHHHHHH
Confidence 45677888999999999999999999999999999999999999873 5678888887653 3
Q ss_pred ccccCc----cccCceEEEEeCCeeeeeeccc-CCCHHHHHHHHH
Q psy9502 186 IRDFFH----ITKYPTLKIIRNGLATRSEYRS-QRTTEALLNFIA 225 (493)
Q Consensus 186 l~~~~~----i~~~Ptl~~f~~g~~~~~~y~G-~~~~~~l~~fi~ 225 (493)
+.++|+ |.+.||+++|++|+... ...| ..+.++|.+|+.
T Consensus 78 ~~~~~~i~~~i~~~PT~v~~k~Gk~v~-~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 78 FRSRFGIPTSFMGTPTFVHITDGKQVS-VRCGSSTTAQELQDIAA 121 (122)
T ss_pred HHHHcCCcccCCCCCEEEEEeCCeEEE-EEeCCCCCHHHHHHHhh
Confidence 334554 55699999999999876 5677 567999988864
No 66
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.51 E-value=7.9e-14 Score=116.62 Aligned_cols=95 Identities=17% Similarity=0.307 Sum_probs=81.2
Q ss_pred HHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCee
Q psy9502 127 FTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 127 f~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~ 206 (493)
|.+.+.....++|.|||+||++|+.+.|.+++++... +.+.+..||.+++++++++|+|.+.||+++|++|..
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-------~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~ 87 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-------DKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGK 87 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-------CceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCee
Confidence 5555556677889999999999999999999998764 369999999999999999999999999999998754
Q ss_pred e-eeecccCCCHHHHHHHHHHHc
Q psy9502 207 T-RSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 207 ~-~~~y~G~~~~~~l~~fi~~~~ 228 (493)
. ...|.|-.+.+++.+||...+
T Consensus 88 ~~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 88 DGGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred cceEEEEecCchHHHHHHHHHHH
Confidence 2 246889888899999988754
No 67
>KOG0908|consensus
Probab=99.48 E-value=1.5e-13 Score=124.51 Aligned_cols=105 Identities=24% Similarity=0.392 Sum_probs=89.1
Q ss_pred cEEcc-cccHHHHHc--CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccC
Q psy9502 119 VKYLR-QNNFTEVLS--QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKY 195 (493)
Q Consensus 119 v~~l~-~~nf~~~l~--~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 195 (493)
|+.++ +.+|+..+. ..+.++|.|||.||++|+++.|+|..+|+++ .+.+|.+||.++....+..+||+.-
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankY-------p~aVFlkVdVd~c~~taa~~gV~am 75 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKY-------PGAVFLKVDVDECRGTAATNGVNAM 75 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhC-------cccEEEEEeHHHhhchhhhcCcccC
Confidence 44454 467887663 3469999999999999999999999999998 3789999999999999999999999
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCc
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPV 232 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~ 232 (493)
||+++|++|.++. .+.|. ++..|.+-|.++++.+.
T Consensus 76 PTFiff~ng~kid-~~qGA-d~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 76 PTFIFFRNGVKID-QIQGA-DASGLEEKVAKYASTSA 110 (288)
T ss_pred ceEEEEecCeEee-eecCC-CHHHHHHHHHHHhccCc
Confidence 9999999999886 78885 66788888888776543
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.44 E-value=3.4e-13 Score=110.90 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=79.4
Q ss_pred cHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc--cCceEEEEeC
Q psy9502 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT--KYPTLKIIRN 203 (493)
Q Consensus 126 nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Ptl~~f~~ 203 (493)
++......+.+++|.|+++||++|+.+.|.++++|+++ ++++.|+.||+++++.+++.++|. ++|+++++++
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~------~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKF------KGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHh------CCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEec
Confidence 33333333679999999999999999999999999999 568999999999999999999999 9999999998
Q ss_pred --Ceeeeeecc-cCCCHHHHHHHHHHH
Q psy9502 204 --GLATRSEYR-SQRTTEALLNFIAEE 227 (493)
Q Consensus 204 --g~~~~~~y~-G~~~~~~l~~fi~~~ 227 (493)
|.+. .+. |..+.++|.+|+.+.
T Consensus 78 ~~~~k~--~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 78 SDGKKY--LMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cccccc--CCCccccCHHHHHHHHHhh
Confidence 5543 344 445999999999864
No 69
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.44 E-value=4.6e-13 Score=114.37 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=79.3
Q ss_pred cHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHH---HHHHHHhhcCCCCCCeEEEEEeCCCC-------------ccccc
Q psy9502 126 NFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLE---ETAAIVDTQYPQDNQVVVAQINCDEE-------------PRIRD 188 (493)
Q Consensus 126 nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~---~~a~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~ 188 (493)
.+.+.++++ ++++|.|||+||++|+.+.|.+. .+.+.++ +++.+..||.+.+ ..++.
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~------~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~ 78 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR------AHFVVVYINIDGDKEVTDFDGEALSEKELAR 78 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH------hheEEEEEEccCCceeeccCCCCccHHHHHH
Confidence 456677788 99999999999999999999985 5656653 3688899998864 57889
Q ss_pred cCccccCceEEEEeCC-eeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 189 FFHITKYPTLKIIRNG-LATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 189 ~~~i~~~Ptl~~f~~g-~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+|+|.++||+++|.++ .....++.|..+.+.+.++++....
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999999875 3333478999998998888877543
No 70
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.42 E-value=8.6e-13 Score=120.39 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=82.3
Q ss_pred CCCCcEEcccccHHHHH-cCC--CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc
Q psy9502 115 NTTRVKYLRQNNFTEVL-SQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH 191 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l-~~~--~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 191 (493)
.-+.|..++..+|...+ .++ .+|+|.||++||++|+.+.|.|+++|.++ +.+.|++||++.. +.+|+
T Consensus 80 ~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~-------~~vkFvkI~ad~~---~~~~~ 149 (192)
T cd02988 80 KFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKF-------PDTKFVKIISTQC---IPNYP 149 (192)
T ss_pred CCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHC-------CCCEEEEEEhHHh---HhhCC
Confidence 34789999999998754 443 48999999999999999999999999987 3699999999763 58899
Q ss_pred cccCceEEEEeCCeeeeeeccc-------CCCHHHHHHHHHH
Q psy9502 192 ITKYPTLKIIRNGLATRSEYRS-------QRTTEALLNFIAE 226 (493)
Q Consensus 192 i~~~Ptl~~f~~g~~~~~~y~G-------~~~~~~l~~fi~~ 226 (493)
|.+.||+++|++|.... .+.| ..+.++|-.++.+
T Consensus 150 i~~lPTlliyk~G~~v~-~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 150 DKNLPTILVYRNGDIVK-QFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCEEEEEECCEEEE-EEeCchhhCCCCCCHHHHHHHHHh
Confidence 99999999999998765 4443 3566666666553
No 71
>KOG4277|consensus
Probab=99.41 E-value=1.4e-11 Score=114.27 Aligned_cols=268 Identities=12% Similarity=0.090 Sum_probs=147.4
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh-hcCCCccc-ccceEE--EecccccccC-------cCCC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE-ECTMTSKE-RRKALR--LYGNAFYKDH-------SSTM 81 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~-~~~i~~~~-~~~~~~--~~~~~~~~~~-------~~~~ 81 (493)
..++.++|+||||| |+|||.|-|+|.+...-.+.++ .+.+++-| .+.+.+ .+...+||+. .+.-
T Consensus 41 kdddiW~VdFYAPW-----C~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dY 115 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPW-----CAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDY 115 (468)
T ss_pred ccCCeEEEEeechh-----hhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeec
Confidence 35667889999999 9999999999987644333322 22223222 122221 1112235543 3333
Q ss_pred CCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEcccc--cHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHH
Q psy9502 82 GDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQN--NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEET 159 (493)
Q Consensus 82 ~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~--nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~ 159 (493)
++.+..+.|.+|......- -+..++.+ .|..+-..+++.+|.|-+.- -.+...|.++
T Consensus 116 RG~R~Kd~iieFAhR~a~a-----------------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtge----~PL~d~fidA 174 (468)
T KOG4277|consen 116 RGGREKDAIIEFAHRCAAA-----------------IIEPINENQIEFEHLQARHQPFFVFFGTGE----GPLFDAFIDA 174 (468)
T ss_pred CCCccHHHHHHHHHhcccc-----------------eeeecChhHHHHHHHhhccCceEEEEeCCC----CcHHHHHHHH
Confidence 4456788888887764311 12233332 34445567889999887543 2345556666
Q ss_pred HHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCch
Q psy9502 160 AAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAP 239 (493)
Q Consensus 160 a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~ 239 (493)
|.. ++.+++.=...+.-....-....-|.+.+|++..... .++| +.++|.+||++..-+.....++ -
T Consensus 175 ASe---------~~~~a~FfSaseeVaPe~~~~kempaV~VFKDetf~i-~de~--dd~dLseWinRERf~~fLa~dg-f 241 (468)
T KOG4277|consen 175 ASE---------KFSVARFFSASEEVAPEENDAKEMPAVAVFKDETFEI-EDEG--DDEDLSEWINRERFPGFLAADG-F 241 (468)
T ss_pred hhh---------heeeeeeeccccccCCcccchhhccceEEEccceeEE-EecC--chhHHHHHHhHhhccchhhccc-c
Confidence 654 4666666444333333444566779999999875432 3344 4578999999866554443322 2
Q ss_pred hhhccC---CceEEEEecCC----CCchh----HHHHHHHhhhccC----CcceEeeeccCC----------CCCc-eEE
Q psy9502 240 KFNVHD---KTLMLGRFNSK----NSPEY----ELFSRVCSTFNHF----DVCKCFARFRHA----------GPPD-VTL 293 (493)
Q Consensus 240 ~l~~~~---~~~vv~ff~~~----~~~~~----~~f~~~A~~l~~~----~~~~f~~~~~~~----------~~p~-ivf 293 (493)
-+.++. +.+++...+.+ .+... ++...+|+.++.. .+.+|+..-|.. +.|. ++|
T Consensus 242 lL~EiG~sGKLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqilM~als~P~l~i~ 321 (468)
T KOG4277|consen 242 LLAEIGASGKLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQILMAALSEPHLFIF 321 (468)
T ss_pred hHHHhCcCCceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHHHHhhcCCeEEEE
Confidence 233333 44444444432 23333 3445556666611 345666655542 2677 445
Q ss_pred ecCCCcccccC----cCCh-HHHHHHHHHhcC
Q psy9502 294 QTEDHTEAFQG----VFER-SRLVQWFTEKCV 320 (493)
Q Consensus 294 ~~~~~~~~y~g----~~~~-~~l~~wi~~~~~ 320 (493)
.-.+ ...|-. ...+ ++|.+||+..+-
T Consensus 322 Ntsn-qeYfLse~d~qikniedilqFientse 352 (468)
T KOG4277|consen 322 NTSN-QEYFLSEDDPQIKNIEDILQFIENTSE 352 (468)
T ss_pred ecCc-hheeeccCChhhhhHHHHHHHHhcccc
Confidence 5544 223321 2223 888888876443
No 72
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.37 E-value=3.2e-12 Score=100.40 Aligned_cols=80 Identities=30% Similarity=0.418 Sum_probs=70.6
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCC
Q psy9502 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRT 216 (493)
Q Consensus 137 ~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~ 216 (493)
.+..||++||++|+.+.|.+++++..+ ++.+.+..||++++++++++|++.++||+++ +|.. .+.|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~------~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~---~~~G~~~ 70 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEM------GDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV---EFIGAPT 70 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHh------cCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE---EEecCCC
Confidence 467899999999999999999999987 3468999999999999999999999999976 6652 5889999
Q ss_pred HHHHHHHHHHH
Q psy9502 217 TEALLNFIAEE 227 (493)
Q Consensus 217 ~~~l~~fi~~~ 227 (493)
.++|.+++.+.
T Consensus 71 ~~~l~~~l~~~ 81 (82)
T TIGR00411 71 KEELVEAIKKR 81 (82)
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 73
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.33 E-value=3.8e-12 Score=106.29 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=67.4
Q ss_pred ccccHHHHHcC--CCeEEEEEEc-------CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------Cccc
Q psy9502 123 RQNNFTEVLSQ--YKLAVVNFYA-------DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------EPRI 186 (493)
Q Consensus 123 ~~~nf~~~l~~--~~~~lV~Fya-------~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------~~~l 186 (493)
+.++|.+.+.+ +++++|.||| +||++|+.+.|.+++++..+ .+++.|.+||+++ +.++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~------~~~v~fv~Vdvd~~~~w~d~~~~~ 81 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAA------PEDCVFIYCDVGDRPYWRDPNNPF 81 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHC------CCCCEEEEEEcCCcccccCcchhh
Confidence 34677777755 5799999999 99999999999999999987 3468999999976 4588
Q ss_pred cccCccc-cCceEEEEeCCeee
Q psy9502 187 RDFFHIT-KYPTLKIIRNGLAT 207 (493)
Q Consensus 187 ~~~~~i~-~~Ptl~~f~~g~~~ 207 (493)
..+++|. +.||+++|++|...
T Consensus 82 ~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 82 RTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred HhccCcccCCCEEEEEcCCcee
Confidence 9999998 99999999877643
No 74
>PTZ00062 glutaredoxin; Provisional
Probab=99.27 E-value=4.6e-11 Score=109.41 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=88.4
Q ss_pred ccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 123 RQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 123 ~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
+.+.|.+++.++ +.++++|+|+||+.|+.+.|.+.++++.+ +.+.|++||.+ |+|.++||+++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~-------~~~~F~~V~~d--------~~V~~vPtfv~~ 69 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDF-------PSLEFYVVNLA--------DANNEYGVFEFY 69 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHC-------CCcEEEEEccc--------cCcccceEEEEE
Confidence 456778877655 78999999999999999999999999986 37999999976 999999999999
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccC-CceEEEEec
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHD-KTLMLGRFN 254 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~-~~~vv~ff~ 254 (493)
++|+... ++.|. ++..|..++.+....+..+. ..+.++++. ..-++.|..
T Consensus 70 ~~g~~i~-r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvvf~K 120 (204)
T PTZ00062 70 QNSQLIN-SLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILLFMK 120 (204)
T ss_pred ECCEEEe-eeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEEEEc
Confidence 9999876 78775 58899999999887544321 112334444 444555544
No 75
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.27 E-value=9e-11 Score=100.28 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=88.7
Q ss_pred CceeecChhcHHHHHhcCCcEEEEEEeCC----CcchHHHHHHHHHHHhhhcCCc-EEEEEEeCcccchhhhhccCCCCC
Q psy9502 321 PLVREITYENAEEISEEGRPLLILCHRHG----DLTSVAIFKRIVRDTIGQYAQN-LSFVTADDLFYQRIFYHHLHLSSD 395 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~~~p~lilf~~~~----d~~~~~~~~~~~~~~~~~~~~~-i~f~~~d~~~~~~~~l~~lgi~~~ 395 (493)
|-|.+||.++..+-.+.+..+|+++.-++ +.+..+.+++.+...+++|+++ +.|+|+|+..+.+. ++.||++..
T Consensus 2 ~~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~-~~~fgl~~~ 80 (130)
T cd02983 2 PEIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDL-EEALNIGGF 80 (130)
T ss_pred CceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHH-HHHcCCCcc
Confidence 56788998877553344467888777653 2234456666666666889999 99999999999888 999999888
Q ss_pred CCCeEEEEeCCc-cccCCCCCCCCCChhHHHHHHHHHHcCCccc
Q psy9502 396 DLPVLRLDDYKH-IYRLPSLITLAENPSTLVSIVEDYFSGKLHA 438 (493)
Q Consensus 396 ~~P~ivi~~~~~-~y~~~~~~~~~~~~~~l~~Fi~d~~sGkl~~ 438 (493)
+.|++++.+.+. +|.+ +.+..+.++|.+|++++.+|+++.
T Consensus 81 ~~P~v~i~~~~~~KY~~---~~~~~t~e~i~~Fv~~~l~Gkl~~ 121 (130)
T cd02983 81 GYPAMVAINFRKMKFAT---LKGSFSEDGINEFLRELSYGRGPT 121 (130)
T ss_pred CCCEEEEEecccCcccc---ccCccCHHHHHHHHHHHHcCCccc
Confidence 899999999875 6663 245578899999999999999953
No 76
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.24 E-value=1.3e-11 Score=103.81 Aligned_cols=96 Identities=17% Similarity=0.311 Sum_probs=67.1
Q ss_pred cHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-cccccCcccc--CceEEEEe
Q psy9502 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIRDFFHITK--YPTLKIIR 202 (493)
Q Consensus 126 nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~--~Ptl~~f~ 202 (493)
.+.....+++++||.|||+||++|+.+.|.+.+.+..... ..++.. ||.+.++ .....|++.+ +||+++|.
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~----~~~fv~--v~vd~~~~~~~~~~~~~g~~vPt~~f~~ 84 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL----SHNFVM--VNLEDDEEPKDEEFSPDGGYIPRILFLD 84 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh----cCcEEE--EEecCCCCchhhhcccCCCccceEEEEC
Confidence 3444556789999999999999999999999998775432 124444 4444443 4457888876 99999996
Q ss_pred -CCeeeee--ecccCCCHHHHHHHHHHH
Q psy9502 203 -NGLATRS--EYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 203 -~g~~~~~--~y~G~~~~~~l~~fi~~~ 227 (493)
+|+.... ...|.++.+.+.+++...
T Consensus 85 ~~Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 85 PSGDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCCCchhhccCCCCccccccCCCHHHH
Confidence 7776542 455666666665555443
No 77
>PHA02125 thioredoxin-like protein
Probab=99.19 E-value=6.3e-11 Score=91.33 Aligned_cols=69 Identities=26% Similarity=0.520 Sum_probs=55.9
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC-CC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ-RT 216 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~-~~ 216 (493)
+|.|||+||++|+.+.|.++++ .+.+++||++++.+++++|+|.++||++ +|+... ++.|. ++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~------------~~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~-~~~G~~~~ 65 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV------------EYTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD-RFTGVPRN 65 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH------------hheEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE-EEeCCCCc
Confidence 6899999999999999998754 2457899999999999999999999987 566544 57774 45
Q ss_pred HHHHHH
Q psy9502 217 TEALLN 222 (493)
Q Consensus 217 ~~~l~~ 222 (493)
..+|.+
T Consensus 66 ~~~l~~ 71 (75)
T PHA02125 66 VAELKE 71 (75)
T ss_pred HHHHHH
Confidence 555544
No 78
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.11 E-value=2.3e-10 Score=88.38 Aligned_cols=72 Identities=10% Similarity=0.221 Sum_probs=58.8
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC-CCH
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ-RTT 217 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~-~~~ 217 (493)
|.||++||++|+.+.|.++++++++ +..+.+.+|| +.+.+.+|+|.+.||+++ +|+.. +.|. .+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~------~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~---~~G~~~~~ 68 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL------GIDAEFEKVT---DMNEILEAGVTATPGVAV--DGELV---IMGKIPSK 68 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc------CCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE---EEeccCCH
Confidence 7899999999999999999999988 4468888887 344578899999999998 77654 7775 455
Q ss_pred HHHHHHH
Q psy9502 218 EALLNFI 224 (493)
Q Consensus 218 ~~l~~fi 224 (493)
+.|.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.06 E-value=4.2e-10 Score=119.91 Aligned_cols=98 Identities=14% Similarity=0.324 Sum_probs=79.0
Q ss_pred ccccHHHHHc----CCCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEeCCCC----ccccccCc
Q psy9502 123 RQNNFTEVLS----QYKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQINCDEE----PRIRDFFH 191 (493)
Q Consensus 123 ~~~nf~~~l~----~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~ 191 (493)
+.+++++.++ ++++++|+|||+||++|+.+.+.. .++.+.+ +++.+.++|++++ .+++++|+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l-------~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQAL-------ADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHh-------cCCEEEEEECCCCChhhHHHHHHcC
Confidence 3466777653 368999999999999999999874 5666666 2588999999864 57889999
Q ss_pred cccCceEEEEe-CCeee-eeecccCCCHHHHHHHHHHH
Q psy9502 192 ITKYPTLKIIR-NGLAT-RSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 192 i~~~Ptl~~f~-~g~~~-~~~y~G~~~~~~l~~fi~~~ 227 (493)
|.++||+++|. +|+.. ..++.|..+.+++.+++++.
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999997 66653 23688999999999999874
No 80
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=99.06 E-value=3.2e-10 Score=89.16 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=66.6
Q ss_pred cccCCCchhhhccC--CceEEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccCCC-------CCceEEecCC--Ccc
Q psy9502 232 VMDLEEAPKFNVHD--KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAG-------PPDVTLQTED--HTE 300 (493)
Q Consensus 232 ~~~i~s~~~l~~~~--~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~-------~p~ivf~~~~--~~~ 300 (493)
|+++.+.++++.+. ++.|||||+++++++|.+|+++|..|+ ++|.|++.+|... .|.|+|++.. ..+
T Consensus 1 Ikef~~~~eL~~id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr--~dC~F~v~~G~~~~~~~~~~~~~i~frp~~~~~~~ 78 (91)
T cd03070 1 IKEFRNLDELNNVDRSKRNIIGYFESKDSDEYDNFRKVANILR--DDCSFLVGFGDVTKPERPPGDNIIYFPPGHNAPDM 78 (91)
T ss_pred CceecCHHHHHhhCcCCceEEEEEcCCCChhHHHHHHHHHHHh--hcCeEEEEeccccccccCCCCCeEEECCCCCCCce
Confidence 46778888888776 899999999999999999999999999 9999999999754 2338899874 669
Q ss_pred cccCcCCh-HHH
Q psy9502 301 AFQGVFER-SRL 311 (493)
Q Consensus 301 ~y~g~~~~-~~l 311 (493)
+|.|++++ +.|
T Consensus 79 ~y~G~~tn~~~l 90 (91)
T cd03070 79 VYLGSLTNFDLL 90 (91)
T ss_pred EEccCCCChhhh
Confidence 99999976 544
No 81
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.06 E-value=7.6e-10 Score=106.77 Aligned_cols=88 Identities=15% Similarity=0.212 Sum_probs=71.8
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-----------CccccccCccccCceEEEEe
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-----------EPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Ptl~~f~ 202 (493)
++++||.|||+||++|+.+.|++.++++++ ++.+..|+.+. +..+.++++|.++||++++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~y--------g~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRY--------GIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHc--------CcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 679999999999999999999999999987 45555555543 34678899999999999998
Q ss_pred C-CeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 203 N-GLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 203 ~-g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+ |+.......|..+.++|.+.+.....
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 6 55443356799999999999987654
No 82
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.05 E-value=1.7e-09 Score=97.78 Aligned_cols=103 Identities=19% Similarity=0.306 Sum_probs=80.4
Q ss_pred cEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----------------
Q psy9502 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------- 182 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------- 182 (493)
+..++++.+...--.+++++|.||++||++|+...+.+.++++++.+. ++.+..|+++.
T Consensus 46 ~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-----~~~vi~i~~d~~~~~~~~~~~~~~~~~ 120 (173)
T PRK03147 46 LTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-----GVEIIAVNVDETELAVKNFVNRYGLTF 120 (173)
T ss_pred eecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-----CeEEEEEEcCCCHHHHHHHHHHhCCCc
Confidence 455666555432234689999999999999999999999999998643 57788887753
Q ss_pred ------CccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 183 ------EPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 183 ------~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
+..+++.|+|.++|+++++..+......+.|..+.+++.+++.+
T Consensus 121 ~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 121 PVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred eEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 45778999999999999886443433378999999999999875
No 83
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.02 E-value=1.1e-09 Score=92.63 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=62.7
Q ss_pred ccccHHHHHcCCCeEEEEEEcCCChhHhhhhHH-H--HHHHHHHhhcCCCCCCeEEEEEeCCCCcccccc--------Cc
Q psy9502 123 RQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPV-L--EETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF--------FH 191 (493)
Q Consensus 123 ~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--------~~ 191 (493)
+++.+....++++++||.|||+||+.|+.+.+. | .++++.+. ..+.+.+||.++++++++. |+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~------~~fv~VkvD~~~~~~~~~~~~~~~~~~~~ 77 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN------ENFVPIKVDREERPDVDKIYMNAAQAMTG 77 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh------CCEEEEEEeCCcCcHHHHHHHHHHHHhcC
Confidence 345677788889999999999999999999874 4 35666662 3688999999998877653 58
Q ss_pred cccCceEEEEeC-Ceee
Q psy9502 192 ITKYPTLKIIRN-GLAT 207 (493)
Q Consensus 192 i~~~Ptl~~f~~-g~~~ 207 (493)
+.++||++++.. |+..
T Consensus 78 ~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 78 QGGWPLNVFLTPDLKPF 94 (124)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 999999999964 5543
No 84
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.01 E-value=3.3e-09 Score=89.58 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=91.0
Q ss_pred EEcccccHHHHHcCCCeEEEEEEcC--CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 120 KYLRQNNFTEVLSQYKLAVVNFYAD--WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 120 ~~l~~~nf~~~l~~~~~~lV~Fya~--wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
..++..+++.++...+..+|.|-.+ -++.+.-..=++.++++++.+ +++.+++||+++++.++.+|+|.++||
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-----~~v~~akVDiD~~~~LA~~fgV~siPT 94 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-----YTWQVAIADLEQSEAIGDRFGVFRFPA 94 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-----CceEEEEEECCCCHHHHHHcCCccCCE
Confidence 3467788999998888777766544 467777788889999999821 369999999999999999999999999
Q ss_pred EEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCc
Q psy9502 198 LKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPV 232 (493)
Q Consensus 198 l~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~ 232 (493)
+++|++|+... ...|.++.+.+.+||.+.+..+.
T Consensus 95 Ll~FkdGk~v~-~i~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 95 TLVFTGGNYRG-VLNGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred EEEEECCEEEE-EEeCcCCHHHHHHHHHHHhcCcC
Confidence 99999999886 78999999999999999887664
No 85
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.00 E-value=2e-09 Score=94.50 Aligned_cols=88 Identities=23% Similarity=0.362 Sum_probs=64.3
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC------------cccc-ccC---ccccC
Q psy9502 132 SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE------------PRIR-DFF---HITKY 195 (493)
Q Consensus 132 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~ 195 (493)
..++..+|+|||+||++|++..|.+.++++++ ++.+..|+.+.. .... ..| ++.++
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~--------~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~i 119 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQF--------GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVT 119 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHc--------CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCC
Confidence 34567799999999999999999999999886 344444554432 1222 334 78899
Q ss_pred ceEEEEeC-CeeeeeecccCCCHHHHHHHHHHH
Q psy9502 196 PTLKIIRN-GLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 196 Ptl~~f~~-g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
||.+++.. |......+.|..+.+++.+.+.+.
T Consensus 120 PTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 120 PATFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CeEEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99999965 444333578999999988887764
No 86
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.00 E-value=1.6e-09 Score=92.05 Aligned_cols=93 Identities=22% Similarity=0.289 Sum_probs=69.7
Q ss_pred EcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe---------------------
Q psy9502 121 YLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN--------------------- 179 (493)
Q Consensus 121 ~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd--------------------- 179 (493)
.++++.+......+++++|.||++||++|+.+.|.+.++++.+ .+....+|
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 78 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKGYGFPVI 78 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcCCCccEE
Confidence 3455555554445689999999999999999999999988764 22222121
Q ss_pred CCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHH
Q psy9502 180 CDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLN 222 (493)
Q Consensus 180 ~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~ 222 (493)
++.+..++++|+|.+.|+++++.+|+ ....+.|..+.+.|.+
T Consensus 79 ~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 79 NDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred ECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 24556799999999999999998776 4447889888888765
No 87
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.99 E-value=7.8e-10 Score=92.30 Aligned_cols=88 Identities=20% Similarity=0.375 Sum_probs=62.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC--------------------ccccccCcc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE--------------------PRIRDFFHI 192 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i 192 (493)
++++++|.|+++||++|+.+.+...+..+....- ..++.+..++++.. .++.+.++|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL---KDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE---HCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh---hcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 4689999999999999999999988755433221 12567777777643 358889999
Q ss_pred ccCceEEEEe-CCeeeeeecccCCCHHHHHHHH
Q psy9502 193 TKYPTLKIIR-NGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 193 ~~~Ptl~~f~-~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+++||++++. +|+... .+.|..+.++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~-~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY-RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE-EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE-EecCCCCHHHHHhhC
Confidence 9999999996 677654 689999999998865
No 88
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.98 E-value=4.5e-09 Score=87.15 Aligned_cols=103 Identities=18% Similarity=0.327 Sum_probs=80.6
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCC---CcchHHHHHHHHHHHhhhcC-CcEEEEEEeCcccchhhhhccCCCCCC--
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHG---DLTSVAIFKRIVRDTIGQYA-QNLSFVTADDLFYQRIFYHHLHLSSDD-- 396 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~---d~~~~~~~~~~~~~~~~~~~-~~i~f~~~d~~~~~~~~l~~lgi~~~~-- 396 (493)
|.++|.+|...++. .|++++|++.+ +.+..+.+++.+..++++|+ ++++|+++|...+.+. ++.||++..+
T Consensus 1 v~~~~~en~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~-l~~fgl~~~~~~ 77 (111)
T cd03073 1 VGHRTKDNRAQFTK--KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHE-LEEFGLDFSGGE 77 (111)
T ss_pred CCeeccchHHHhcc--CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHH-HHHcCCCcccCC
Confidence 46789999999974 67777777542 23445666666666668899 7999999999999988 9999999867
Q ss_pred CCeEEEEeCC-ccccCCCCCCCCC-ChhHHHHHHHHHH
Q psy9502 397 LPVLRLDDYK-HIYRLPSLITLAE-NPSTLVSIVEDYF 432 (493)
Q Consensus 397 ~P~ivi~~~~-~~y~~~~~~~~~~-~~~~l~~Fi~d~~ 432 (493)
.|+++|.+.. ++|.+++ .. +.++|.+|++++.
T Consensus 78 ~P~~~i~~~~~~KY~~~~----~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 78 KPVVAIRTAKGKKYVMEE----EFSDVDALEEFLEDFF 111 (111)
T ss_pred CCEEEEEeCCCCccCCCc----ccCCHHHHHHHHHHhC
Confidence 9999998854 5787543 34 7899999999873
No 89
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.97 E-value=4.4e-09 Score=86.28 Aligned_cols=99 Identities=24% Similarity=0.417 Sum_probs=78.2
Q ss_pred hcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC--C
Q psy9502 329 ENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY--K 406 (493)
Q Consensus 329 ~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~--~ 406 (493)
+++......++|++++|+.+++ ..++.+...+.+.+++|++++.|+++|+.++++. ++.+|+.....|++++.+. +
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~-~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 3 ETFFNYEESGKPLLVLFYNKDD-SESEELRERFKEVAKKFKGKLLFVVVDADDFGRH-LEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred hHHhhhhhcCCCEEEEEEcCCh-hhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH-HHHcCCChhhCCEEEEEecccc
Confidence 4445555557899999998776 3556666666655578899999999999999988 9999998778999999888 5
Q ss_pred ccccCCCCCCCCCChhHHHHHHHHHH
Q psy9502 407 HIYRLPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 407 ~~y~~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
.+|.+.. +..+.++|.+||++++
T Consensus 81 ~k~~~~~---~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 81 KKYLMPE---EELTAESLEEFVEDFL 103 (103)
T ss_pred cccCCCc---cccCHHHHHHHHHhhC
Confidence 6777543 3457899999999863
No 90
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.96 E-value=2.7e-09 Score=91.21 Aligned_cols=79 Identities=25% Similarity=0.334 Sum_probs=60.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe-----------------------CCCCcccccc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN-----------------------CDEEPRIRDF 189 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~ 189 (493)
.+++++|.||++||++|++..|.+.++++.. ++.+..|+ ++.+..+++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--------~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 95 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--------RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGID 95 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--------CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHh
Confidence 4689999999999999999999999987764 24444444 4455677888
Q ss_pred CccccCceEEEE-eCCeeeeeecccCCCHHHH
Q psy9502 190 FHITKYPTLKII-RNGLATRSEYRSQRTTEAL 220 (493)
Q Consensus 190 ~~i~~~Ptl~~f-~~g~~~~~~y~G~~~~~~l 220 (493)
|++.++|+.+++ ++|+... .+.|..+.+.|
T Consensus 96 ~~v~~~P~~~~ld~~G~v~~-~~~G~~~~~~~ 126 (127)
T cd03010 96 LGVYGVPETFLIDGDGIIRY-KHVGPLTPEVW 126 (127)
T ss_pred cCCCCCCeEEEECCCceEEE-EEeccCChHhc
Confidence 999999966666 5676554 78898877654
No 91
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.96 E-value=2e-09 Score=111.59 Aligned_cols=91 Identities=21% Similarity=0.362 Sum_probs=73.0
Q ss_pred HcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEE----------------------------EeCCC
Q psy9502 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ----------------------------INCDE 182 (493)
Q Consensus 131 l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~----------------------------vd~~~ 182 (493)
++.+++++|+|||+||++|++..|.+.+++++++.. ++.+.. |+++.
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-----~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~ 127 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-----SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDN 127 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-----CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccc
Confidence 346789999999999999999999999999987532 344433 44555
Q ss_pred CccccccCccccCceEEEE-eCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 183 EPRIRDFFHITKYPTLKII-RNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 183 ~~~l~~~~~i~~~Ptl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+..+.+.|+|.++||++++ ++|+... .+.|..+.++|.++|+..
T Consensus 128 ~~~lak~fgV~giPTt~IIDkdGkIV~-~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 128 GGTLAQSLNISVYPSWAIIGKDGDVQR-IVKGSISEAQALALIRNP 172 (521)
T ss_pred cHHHHHHcCCCCcCeEEEEcCCCeEEE-EEeCCCCHHHHHHHHHHh
Confidence 6678899999999999776 5676654 789999999999999843
No 92
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.95 E-value=3.3e-09 Score=91.27 Aligned_cols=72 Identities=26% Similarity=0.438 Sum_probs=57.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC------------------------ccccc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE------------------------PRIRD 188 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~ 188 (493)
.++++||.||++||++|++..|.+.++++++++.. .++.+..|+.+.+ ..+++
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~---~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESG---KNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNR 93 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcC---CCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHH
Confidence 46899999999999999999999999999987542 2566666665533 34677
Q ss_pred cCccccCceEEEEe-CCeee
Q psy9502 189 FFHITKYPTLKIIR-NGLAT 207 (493)
Q Consensus 189 ~~~i~~~Ptl~~f~-~g~~~ 207 (493)
.|+|.++|+++++. +|+..
T Consensus 94 ~~~v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 94 TFKIEGIPTLIILDADGEVV 113 (131)
T ss_pred HcCCCCCCEEEEECCCCCEE
Confidence 89999999999996 56543
No 93
>KOG0913|consensus
Probab=98.94 E-value=2.9e-10 Score=102.72 Aligned_cols=106 Identities=24% Similarity=0.429 Sum_probs=94.1
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
+.++.++.+|+..++ ..-|++.|+||||+-|+.+.|.|+..|.--.+ -.|.+|.||.+.|+.|.-+|-+...|
T Consensus 24 s~~~~~~eenw~~~l--~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-----L~v~va~VDvt~npgLsGRF~vtaLp 96 (248)
T KOG0913|consen 24 SKLTRIDEENWKELL--TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-----LGVKVAKVDVTTNPGLSGRFLVTALP 96 (248)
T ss_pred ceeEEecccchhhhh--chHHHHHhcCCCCccccchHHHHhccCCccCC-----CceeEEEEEEEeccccceeeEEEecc
Confidence 478999999999998 56799999999999999999999998875433 27999999999999999999999999
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCC
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDP 231 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~ 231 (493)
||+-.++|.-. +|.|.|+..++++|+...--..
T Consensus 97 tIYHvkDGeFr--rysgaRdk~dfisf~~~r~w~~ 129 (248)
T KOG0913|consen 97 TIYHVKDGEFR--RYSGARDKNDFISFEEHREWQS 129 (248)
T ss_pred eEEEeeccccc--cccCcccchhHHHHHHhhhhhc
Confidence 99999999865 6999999999999998765433
No 94
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.93 E-value=1.7e-09 Score=81.38 Aligned_cols=60 Identities=22% Similarity=0.388 Sum_probs=52.3
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCe
Q psy9502 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGL 205 (493)
Q Consensus 137 ~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~ 205 (493)
-++.||++||++|+++.+.+++++... +++.+..+|.++++++.+++++.+.||+++ +|+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~-------~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~ 61 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN-------PNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGK 61 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC-------CceEEEEEEcccCHhHHHHcCCcccCEEEE--CCE
Confidence 367899999999999999999997642 379999999999999999999999999854 554
No 95
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.91 E-value=2.8e-08 Score=90.56 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=112.8
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC-CCHHHHHHHHHHHcC
Q psy9502 151 LLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ-RTTEALLNFIAEELK 229 (493)
Q Consensus 151 ~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~-~~~~~l~~fi~~~~~ 229 (493)
.+...|.++|+.+ .+.+.|+.+. +.++++++++.. |++++|+++......|.|. .+.++|.+||..+.-
T Consensus 7 ~~~~~f~~~A~~~------~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 7 ELFEIFEEAAEKL------KGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHH------TTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhC------cCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 4567899999999 5578999887 577999999999 9999999965545579998 899999999999999
Q ss_pred CCcccCCCchhhhccC---CceEEEEecCCCC----chhHHHHHHHhhhccCCcceEeeeccCC-------------CCC
Q psy9502 230 DPVMDLEEAPKFNVHD---KTLMLGRFNSKNS----PEYELFSRVCSTFNHFDVCKCFARFRHA-------------GPP 289 (493)
Q Consensus 230 ~~~~~i~s~~~l~~~~---~~~vv~ff~~~~~----~~~~~f~~~A~~l~~~~~~~f~~~~~~~-------------~~p 289 (493)
|.+.+++ .+.+..+. ...++.+|..++. ...+.+..+|..++ +.+.|..+.+.. ..|
T Consensus 77 P~v~~~t-~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~~f~~~d~~~~~~~~~~~~i~~~~~P 153 (184)
T PF13848_consen 77 PLVPELT-PENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK--GKINFVYVDADDFPRLLKYFGIDEDDLP 153 (184)
T ss_dssp TSCEEES-TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT--TTSEEEEEETTTTHHHHHHTTTTTSSSS
T ss_pred ccccccc-hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC--CeEEEEEeehHHhHHHHHHcCCCCccCC
Confidence 9999995 44555443 3435555544333 22456778999998 888887765542 378
Q ss_pred ceE-EecCC--CcccccCcCChHHHHHHHHH
Q psy9502 290 DVT-LQTED--HTEAFQGVFERSRLVQWFTE 317 (493)
Q Consensus 290 ~iv-f~~~~--~~~~y~g~~~~~~l~~wi~~ 317 (493)
+++ +.... ....+.|.++.+.|..|+++
T Consensus 154 ~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 154 ALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 855 44333 22334788888999999974
No 96
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.89 E-value=1.1e-08 Score=92.58 Aligned_cols=88 Identities=18% Similarity=0.273 Sum_probs=67.5
Q ss_pred HcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe-----------------------CCCCcccc
Q psy9502 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN-----------------------CDEEPRIR 187 (493)
Q Consensus 131 l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~ 187 (493)
...+++++|.||++||++|++..|.++++++. ++.+..|+ ++.+..+.
T Consensus 60 ~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~ 130 (173)
T TIGR00385 60 FIQGKPVLLNVWASWCPPCRAEHPYLNELAKD---------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLG 130 (173)
T ss_pred hcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchH
Confidence 34578999999999999999999999888653 23333333 34445667
Q ss_pred ccCccccCceEEEE-eCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 188 DFFHITKYPTLKII-RNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 188 ~~~~i~~~Ptl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
+.|++.++|+.+++ ++|+... .+.|..+.+++.+++.+.+
T Consensus 131 ~~~~v~~~P~~~~id~~G~i~~-~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 131 LDLGVYGAPETFLVDGNGVILY-RHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred HhcCCeeCCeEEEEcCCceEEE-EEeccCCHHHHHHHHHHHh
Confidence 78999999976666 5676554 6889999999999998865
No 97
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.88 E-value=6.4e-09 Score=86.34 Aligned_cols=74 Identities=27% Similarity=0.465 Sum_probs=62.7
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-----------------------ccccccC
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-----------------------PRIRDFF 190 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~ 190 (493)
+++++|.||++||++|++..+.+.++.+++.+ .++.++.|+++.+ ..+++.|
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-----~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-----DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAY 93 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhc
Confidence 68999999999999999999999999998852 3799999999885 6789999
Q ss_pred ccccCceEEEEe-CCeeeeeeccc
Q psy9502 191 HITKYPTLKIIR-NGLATRSEYRS 213 (493)
Q Consensus 191 ~i~~~Ptl~~f~-~g~~~~~~y~G 213 (493)
++.++|+++++. +|+... .|.|
T Consensus 94 ~~~~~P~~~l~d~~g~v~~-~~~g 116 (116)
T cd02966 94 GVRGLPTTFLIDRDGRIRA-RHVG 116 (116)
T ss_pred CcCccceEEEECCCCcEEE-EecC
Confidence 999999999996 454443 5554
No 98
>KOG0914|consensus
Probab=98.88 E-value=2.7e-09 Score=95.00 Aligned_cols=95 Identities=19% Similarity=0.372 Sum_probs=80.7
Q ss_pred CCCCCCCCCCcEEc-ccccHHHHHcCC--CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc
Q psy9502 109 PLHYTNNTTRVKYL-RQNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185 (493)
Q Consensus 109 ~~p~~~~~~~v~~l-~~~nf~~~l~~~--~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~ 185 (493)
|.|...++..+..+ +++.+++.++.+ ..|+|.|||.|.+.|.++.|.|.+++.++... .+.||+||....++
T Consensus 116 ~eP~y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-----~lkFGkvDiGrfpd 190 (265)
T KOG0914|consen 116 PEPAYSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-----LLKFGKVDIGRFPD 190 (265)
T ss_pred CccccCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-----CCcccceeeccCcC
Confidence 34555567789999 566777777655 59999999999999999999999999999643 79999999999999
Q ss_pred ccccCccc------cCceEEEEeCCeeee
Q psy9502 186 IRDFFHIT------KYPTLKIIRNGLATR 208 (493)
Q Consensus 186 l~~~~~i~------~~Ptl~~f~~g~~~~ 208 (493)
.+.+|+|+ ..||+++|.+|+...
T Consensus 191 ~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 191 VAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred hHHheeeccCcccccCCeEEEEccchhhh
Confidence 99999986 479999999998754
No 99
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.87 E-value=6.6e-09 Score=82.60 Aligned_cols=76 Identities=16% Similarity=0.091 Sum_probs=64.1
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeeccc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G 213 (493)
+..-+..|+++||++|....+.+++++... +++.+..+|.++.++++++|+|.+.||+++ +|+.. +.|
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-------~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~---~~G 79 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-------PNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF---GFG 79 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-------CCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE---EeC
Confidence 456677899999999999999999998764 479999999999999999999999999964 77653 568
Q ss_pred CCCHHHHH
Q psy9502 214 QRTTEALL 221 (493)
Q Consensus 214 ~~~~~~l~ 221 (493)
..+.++++
T Consensus 80 ~~~~~e~~ 87 (89)
T cd03026 80 RMTLEEIL 87 (89)
T ss_pred CCCHHHHh
Confidence 77777664
No 100
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.84 E-value=2e-08 Score=91.72 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=66.9
Q ss_pred cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-----------------------ccccc
Q psy9502 132 SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-----------------------PRIRD 188 (493)
Q Consensus 132 ~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~ 188 (493)
..+++++|+|||+||++|++..|.+.+++++ ++.+..|+.+++ ..+..
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 136 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGL 136 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHH
Confidence 3578999999999999999999999887542 456666765432 12345
Q ss_pred cCccccCceEEEEe-CCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 189 FFHITKYPTLKIIR-NGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 189 ~~~i~~~Ptl~~f~-~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
.|+|.++|+.+++. +|+... .+.|..+.+.+.+++...+.
T Consensus 137 ~~gv~~~P~t~vid~~G~i~~-~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 137 DLGVYGAPETFLIDGNGIIRY-RHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred hcCCCcCCeEEEECCCceEEE-EEecCCCHHHHHHHHHHHHH
Confidence 78999999777775 666544 78999999999888887664
No 101
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.83 E-value=1.1e-08 Score=88.12 Aligned_cols=71 Identities=21% Similarity=0.397 Sum_probs=56.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-------------------------ccc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-------------------------RIR 187 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~ 187 (493)
.+++++|.|||+||++|+...|.+.++++.+++.. .++.+..|+++... .+.
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~---~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEG---KNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcC---CCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 36899999999999999999999999999986542 25667777666532 345
Q ss_pred ccCccccCceEEEEe-CCee
Q psy9502 188 DFFHITKYPTLKIIR-NGLA 206 (493)
Q Consensus 188 ~~~~i~~~Ptl~~f~-~g~~ 206 (493)
+.|+|.++||++++. +|+.
T Consensus 93 ~~~~v~~iPt~~lid~~G~i 112 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDGDV 112 (132)
T ss_pred HHcCCCCCCEEEEECCCCCE
Confidence 679999999999997 4543
No 102
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.77 E-value=2.3e-08 Score=86.78 Aligned_cols=75 Identities=16% Similarity=0.362 Sum_probs=57.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCC--CCCCeEEEEEeCCCCc-------------------------c
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYP--QDNQVVVAQINCDEEP-------------------------R 185 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~--~~~~v~~~~vd~~~~~-------------------------~ 185 (493)
.+++++|+|||+||++|+++.|.+.+++++++++.+ ...++.+..|+.+++. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999999998876420 0225777777766421 3
Q ss_pred ccccCccccCceEEEEe-CCeee
Q psy9502 186 IRDFFHITKYPTLKIIR-NGLAT 207 (493)
Q Consensus 186 l~~~~~i~~~Ptl~~f~-~g~~~ 207 (493)
+.++|+|.++||++++. +|+..
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 66688999999999997 45443
No 103
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.76 E-value=2.5e-08 Score=80.49 Aligned_cols=68 Identities=24% Similarity=0.404 Sum_probs=54.0
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------------------------ccccc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------------------------PRIRD 188 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~ 188 (493)
+++++|.|||+||++|++..|.+.++.+++++. +++.+..|++++. ..+.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~----~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKK----DDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLK 76 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT----TTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC----CCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHH
Confidence 478999999999999999999999999999742 4899998888764 13667
Q ss_pred cCccccCceEEEEeCCe
Q psy9502 189 FFHITKYPTLKIIRNGL 205 (493)
Q Consensus 189 ~~~i~~~Ptl~~f~~g~ 205 (493)
.|+|.++|+++++.+..
T Consensus 77 ~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 77 KYGINGIPTLVLLDPDG 93 (95)
T ss_dssp HTT-TSSSEEEEEETTS
T ss_pred HCCCCcCCEEEEECCCC
Confidence 78899999999987543
No 104
>KOG0912|consensus
Probab=98.76 E-value=7.7e-08 Score=90.20 Aligned_cols=223 Identities=11% Similarity=0.079 Sum_probs=131.0
Q ss_pred EeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH-HHhhhcCC--Ccccc---cceEEEecccccccCcC------
Q psy9502 12 VESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF-ELLEECTM--TSKER---RKALRLYGNAFYKDHSS------ 79 (493)
Q Consensus 12 ~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~-~~~~~~~i--~~~~~---~~~~~~~~~~~~~~~~~------ 79 (493)
+.+...|+|-|||.| |+-.+.|+|+++++++.+ ++..+-.+ +..|+ ..-...|...+||+.+-
T Consensus 10 l~s~elvfv~FyAdW-----CrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~ 84 (375)
T KOG0912|consen 10 LDSNELVFVNFYADW-----CRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEM 84 (375)
T ss_pred hccceEEeeeeehhh-----chHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccch
Confidence 467788999999999 999999999999986544 44333111 22221 11112333444776421
Q ss_pred ---CCCCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEccc-ccHHHHHcCCCeEEE-EEEcCCChhHhhhhH
Q psy9502 80 ---TMGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQ-NNFTEVLSQYKLAVV-NFYADWCRFCHLLKP 154 (493)
Q Consensus 80 ---~~~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~-~nf~~~l~~~~~~lV-~Fya~wC~~C~~l~p 154 (493)
.-++.++.+.|.+||++-+... +.+..+ +.+......++-.+| .|-....+. ..
T Consensus 85 ~~rEYRg~RsVeaL~efi~kq~s~~-----------------i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspe----y~ 143 (375)
T KOG0912|consen 85 MKREYRGQRSVEALIEFIEKQLSDP-----------------INEFESLDQLQNLDIPSKRTVIGYFPSKDSPE----YD 143 (375)
T ss_pred hhhhhccchhHHHHHHHHHHHhccH-----------------HHHHHhHHHHHhhhccccceEEEEeccCCCch----HH
Confidence 1233567888999998864322 222211 223333343444444 454333222 24
Q ss_pred HHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeee-eecccCC-CHHHHHHHHHHHcCCCc
Q psy9502 155 VLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATR-SEYRSQR-TTEALLNFIAEELKDPV 232 (493)
Q Consensus 155 ~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~-~~y~G~~-~~~~l~~fi~~~~~~~~ 232 (493)
.+.++|..++++- .+.++--|... ...-.+-+ +.+|+++...+ ..|.|.. +.+.+..||.+..-+-|
T Consensus 144 ~~~kva~~lr~dc----~f~V~~gD~~~------~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLV 212 (375)
T KOG0912|consen 144 NLRKVASLLRDDC----VFLVGFGDLLK------PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLV 212 (375)
T ss_pred HHHHHHHHHhhcc----EEEeecccccc------CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhh
Confidence 5778888886542 22232222221 11111222 45666655433 3699985 67999999999999999
Q ss_pred ccCCCchhhhccC---CceEEEEecCCCCchhHHHHHH-Hhhhc
Q psy9502 233 MDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRV-CSTFN 272 (493)
Q Consensus 233 ~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~-A~~l~ 272 (493)
+++ +.+..+++. .+.+|+|..+.+....+.|..+ +.++.
T Consensus 213 REi-TFeN~EELtEEGlPflILf~~kdD~~s~k~F~~aI~ReL~ 255 (375)
T KOG0912|consen 213 REI-TFENAEELTEEGLPFLILFRKKDDKESEKIFKNAIARELD 255 (375)
T ss_pred hhh-hhccHHHHhhcCCceEEEEecCCcccHHHHHHHHHHHHhh
Confidence 998 444444443 8899999988777777777655 44554
No 105
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.73 E-value=5.1e-08 Score=87.22 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=65.6
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------------ccccccCcc--ccCceEEEEe
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------------PRIRDFFHI--TKYPTLKIIR 202 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Ptl~~f~ 202 (493)
+|+||++||++|++..|.+.++++++ ++.+..|+.+.. ..+...|++ .++||.+++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~--------g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY--------GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc--------CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEe
Confidence 78899999999999999999999987 455655665533 124457884 6999999995
Q ss_pred -CCeeeeeecccCCCHHHHHHHHHHHcCC
Q psy9502 203 -NGLATRSEYRSQRTTEALLNFIAEELKD 230 (493)
Q Consensus 203 -~g~~~~~~y~G~~~~~~l~~fi~~~~~~ 230 (493)
+|+.....+.|..+.++|.+.+.+.+.-
T Consensus 145 ~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 145 VNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred CCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 5554323689999999998888887654
No 106
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.72 E-value=8.1e-08 Score=109.38 Aligned_cols=91 Identities=18% Similarity=0.341 Sum_probs=74.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeC---------------------------CCCcc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC---------------------------DEEPR 185 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~ 185 (493)
.+++++|+|||+||++|+...|.++++++++++. ++.+..|.+ +.+..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-----~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~ 493 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-----PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMY 493 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-----CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchH
Confidence 4789999999999999999999999999998533 466666643 12334
Q ss_pred ccccCccccCceEEEE-eCCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 186 IRDFFHITKYPTLKII-RNGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 186 l~~~~~i~~~Ptl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+.++|+|.++|+++++ ++|+... .+.|....+.|.+++...+.
T Consensus 494 ~~~~~~V~~iPt~ilid~~G~iv~-~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 494 LWRELGVSSWPTFAVVSPNGKLIA-QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred HHHhcCCCccceEEEECCCCeEEE-EEecccCHHHHHHHHHHHHH
Confidence 6678999999999999 5787665 68899999999999988754
No 107
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.62 E-value=2e-07 Score=78.03 Aligned_cols=91 Identities=22% Similarity=0.284 Sum_probs=72.0
Q ss_pred HcCCCeEEEEEEcCCChhHhhhhH-HH--HHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccCceEEEEeC--
Q psy9502 131 LSQYKLAVVNFYADWCRFCHLLKP-VL--EETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKYPTLKIIRN-- 203 (493)
Q Consensus 131 l~~~~~~lV~Fya~wC~~C~~l~p-~~--~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Ptl~~f~~-- 203 (493)
..++++++|+|+++||+.|+.+.. +| .++.+.+++ ...+.++|.+. ...++..|++.++|++.++..
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~------~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE------NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh------CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 356789999999999999999976 45 456666632 56777778763 457889999999999999975
Q ss_pred CeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 204 GLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 204 g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
|.... ...|..+.+.+++-+++..
T Consensus 88 g~~l~-~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 88 GEVLK-VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CcEeE-EEcCCCCHHHHHHHHHHHH
Confidence 55544 7899999999999888754
No 108
>PTZ00062 glutaredoxin; Provisional
Probab=98.62 E-value=4.8e-08 Score=89.57 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=93.3
Q ss_pred cceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhhhcCC--CcccccceEEEecccccccCcCCCCCCCChhhHHH
Q psy9502 15 VEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLEECTM--TSKERRKALRLYGNAFYKDHSSTMGDSDHLTSLSS 92 (493)
Q Consensus 15 ~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (493)
.+.+++.|+|+| |+.|++|.|.+.++++-+....-+.+ +......|...+...+ .......| .+...+.+
T Consensus 17 ~g~~vl~f~a~w-----~~~C~~m~~vl~~l~~~~~~~~F~~V~~d~~V~~vPtfv~~~~g-~~i~r~~G--~~~~~~~~ 88 (204)
T PTZ00062 17 TGKLVLYVKSSK-----EPEYEQLMDVCNALVEDFPSLEFYVVNLADANNEYGVFEFYQNS-QLINSLEG--CNTSTLVS 88 (204)
T ss_pred CCcEEEEEeCCC-----CcchHHHHHHHHHHHHHCCCcEEEEEccccCcccceEEEEEECC-EEEeeeeC--CCHHHHHH
Confidence 377889999999 99999999999887654433331222 2111455544333332 01122222 35788889
Q ss_pred HHHHHhccCCCCccCCCCCCCCCCCCcEEcccccHHHHHcCCCeEEEEE---EcCCChhHhhhhHHHHHHHHHHhhcCCC
Q psy9502 93 HVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNF---YADWCRFCHLLKPVLEETAAIVDTQYPQ 169 (493)
Q Consensus 93 fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l~~~~~~lV~F---ya~wC~~C~~l~p~~~~~a~~~~~~~~~ 169 (493)
++..|..... +. -..+-..+++++++.++..= ++|||++|++....+.+.
T Consensus 89 ~~~~~~~~~~--------------~~---~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~---------- 141 (204)
T PTZ00062 89 FIRGWAQKGS--------------SE---DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS---------- 141 (204)
T ss_pred HHHHHcCCCC--------------HH---HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc----------
Confidence 9988764220 00 12233455676666555444 458999999998888863
Q ss_pred CCCeEEEEEeCCCCcccccc----CccccCceEEEEeCCee
Q psy9502 170 DNQVVVAQINCDEEPRIRDF----FHITKYPTLKIIRNGLA 206 (493)
Q Consensus 170 ~~~v~~~~vd~~~~~~l~~~----~~i~~~Ptl~~f~~g~~ 206 (493)
+|.+..+|..+++++.+. -+...+|.| |.+|+.
T Consensus 142 --~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV--fI~G~~ 178 (204)
T PTZ00062 142 --GVKYETYNIFEDPDLREELKVYSNWPTYPQL--YVNGEL 178 (204)
T ss_pred --CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 677888898877655333 244566775 456654
No 109
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.61 E-value=1.3e-07 Score=79.01 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=28.5
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHH
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIV 163 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~ 163 (493)
++++++|.||++||++|+...|.++++++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~ 50 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE 50 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHh
Confidence 4689999999999999999999999998876
No 110
>KOG0910|consensus
Probab=98.57 E-value=2.1e-08 Score=85.50 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=52.4
Q ss_pred EEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhhhcCCCccc-------------ccceEEEeccccccc
Q psy9502 10 VEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLEECTMTSKE-------------RRKALRLYGNAFYKD 76 (493)
Q Consensus 10 ~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~~~~i~~~~-------------~~~~~~~~~~~~~~~ 76 (493)
-+++|+.+|+|+|||+| |++||.|.|.+++...-++ +.+.+...| ...|+++.+.++ .
T Consensus 56 ~Vi~S~~PVlVdF~A~W-----CgPCk~l~P~l~~~~~~~~--g~~k~~kvdtD~~~ela~~Y~I~avPtvlvfknG--e 126 (150)
T KOG0910|consen 56 KVINSDVPVLVDFHAEW-----CGPCKMLGPILEELVSEYA--GKFKLYKVDTDEHPELAEDYEISAVPTVLVFKNG--E 126 (150)
T ss_pred HHHccCCCEEEEEecCc-----CccHhHhhHHHHHHHHhhc--CeEEEEEEccccccchHhhcceeeeeEEEEEECC--E
Confidence 35689999999999999 9999999999988754432 223231111 234444444433 2
Q ss_pred CcCCCCCCCChhhHHHHHHHHh
Q psy9502 77 HSSTMGDSDHLTSLSSHVDDWL 98 (493)
Q Consensus 77 ~~~~~~~~~~~~~l~~fi~~~~ 98 (493)
......+..+.+.|.++|.+++
T Consensus 127 ~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 127 KVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred EeeeecccCCHHHHHHHHHHHh
Confidence 2233444567788888888875
No 111
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.57 E-value=6.9e-08 Score=75.70 Aligned_cols=68 Identities=26% Similarity=0.495 Sum_probs=51.6
Q ss_pred HHHHcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe
Q psy9502 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 128 ~~~l~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
.+..++++++||.|+|+||+.|+.+...+ .++.+.+. .++++.+||.+...... .+...++|+++++.
T Consensus 11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~------~~fv~v~vd~~~~~~~~-~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN------KNFVLVKVDVDDEDPNA-QFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH------HCSEEEEEETTTHHHHH-HHHHCSSSEEEEEE
T ss_pred HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH------CCEEEEEEEcCCCChhH-HhCCccCCEEEEeC
Confidence 34456789999999999999999999987 45555453 27899999998765433 22236799999885
No 112
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.53 E-value=4.4e-07 Score=76.73 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=46.4
Q ss_pred HHHHcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCC
Q psy9502 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204 (493)
Q Consensus 128 ~~~l~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g 204 (493)
....+++++++|.||++||++|+.+.... .++++.+++ +.....++.+....-....+ .++||++++...
T Consensus 17 ~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~------~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 17 YKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE------DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred HHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh------CeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 33446789999999999999999999974 345555532 45555666542211112233 689999999543
No 113
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.52 E-value=2e-07 Score=96.01 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=80.5
Q ss_pred EEcccc-cHHHHHcCCC--eEEEEEEcCCChhHhhhhHHHH-HHHHHHhhcCCCCCCeEEEEEeCCCCc----cccccCc
Q psy9502 120 KYLRQN-NFTEVLSQYK--LAVVNFYADWCRFCHLLKPVLE-ETAAIVDTQYPQDNQVVVAQINCDEEP----RIRDFFH 191 (493)
Q Consensus 120 ~~l~~~-nf~~~l~~~~--~~lV~Fya~wC~~C~~l~p~~~-~~a~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~ 191 (493)
..++.. ..++.+.+++ +|+|+|||+||--||.+++.-- ...... . -.++++.++|.++|. ++-++|+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~--~---~~~~vlLqaDvT~~~p~~~~lLk~~~ 531 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQ--A---LQDVVLLQADVTANDPAITALLKRLG 531 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHH--h---cCCeEEEEeeecCCCHHHHHHHHHcC
Confidence 445554 7888887776 9999999999999999999743 222222 2 238999999999874 5778999
Q ss_pred cccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 192 ITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 192 i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+-+.|++++|..+...+..-.|..+.+.+.+++++.
T Consensus 532 ~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999999999984443333488999999999999875
No 114
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.50 E-value=3.4e-07 Score=78.12 Aligned_cols=75 Identities=17% Similarity=0.272 Sum_probs=56.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------------Ccc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------------EPR 185 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~ 185 (493)
.+++++|.||++||+.|++..|.+.++++++++. ++.+..|++.. ...
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~-----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~ 96 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD-----GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYA 96 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC-----CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchH
Confidence 4689999999999999999999999999999643 57777675421 123
Q ss_pred ccccCccccCceEEEEe-CCeeeeeeccc
Q psy9502 186 IRDFFHITKYPTLKIIR-NGLATRSEYRS 213 (493)
Q Consensus 186 l~~~~~i~~~Ptl~~f~-~g~~~~~~y~G 213 (493)
+.+.|++.++|+.+++. +|+... .+.|
T Consensus 97 ~~~~~~v~~~P~~~vid~~G~v~~-~~~G 124 (126)
T cd03012 97 TWRAYGNQYWPALYLIDPTGNVRH-VHFG 124 (126)
T ss_pred HHHHhCCCcCCeEEEECCCCcEEE-EEec
Confidence 55668899999999995 455443 4555
No 115
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.46 E-value=4.2e-07 Score=74.70 Aligned_cols=85 Identities=14% Similarity=0.256 Sum_probs=68.9
Q ss_pred cccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccCCC------CCc-eEEec------
Q psy9502 232 VMDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAG------PPD-VTLQT------ 295 (493)
Q Consensus 232 ~~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~------~p~-ivf~~------ 295 (493)
++++.+.++++.+. +..+||||.+.+++.++.|.++|..++ ++|.|++..+... .|+ ++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R--~d~~F~~~~~~~~~~~~~~~~~ivl~~p~~~~~k 79 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLR--ESFRFAHTSDKQLLEKYGYGEGVVLFRPPRLSNK 79 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhh--hcCEEEEEChHHHHHhcCCCCceEEEechhhhcc
Confidence 46677888887754 789999999988899999999999999 9999998776421 455 67854
Q ss_pred CC-CcccccCcCChHHHHHHHHHh
Q psy9502 296 ED-HTEAFQGVFERSRLVQWFTEK 318 (493)
Q Consensus 296 ~~-~~~~y~g~~~~~~l~~wi~~~ 318 (493)
.+ ....|.|+++.+.|..||..+
T Consensus 80 ~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 80 FEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred cCcccccccCcCCHHHHHHHHHhh
Confidence 23 456799999889999999875
No 116
>smart00594 UAS UAS domain.
Probab=98.46 E-value=1.2e-06 Score=74.22 Aligned_cols=94 Identities=14% Similarity=0.282 Sum_probs=69.6
Q ss_pred ccHHHHH----cCCCeEEEEEEcCCChhHhhhhHH-H--HHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccC
Q psy9502 125 NNFTEVL----SQYKLAVVNFYADWCRFCHLLKPV-L--EETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKY 195 (493)
Q Consensus 125 ~nf~~~l----~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~ 195 (493)
.+|++.+ .+++.++|+|+++||+.|+.+... | .++.+.++ .++.+..+|.+. ...++.+|++++|
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~------~~fv~~~~dv~~~eg~~l~~~~~~~~~ 87 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR------ENFIFWQVDVDTSEGQRVSQFYKLDSF 87 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH------cCEEEEEecCCChhHHHHHHhcCcCCC
Confidence 3455543 556899999999999999999875 3 44556663 257777777664 3568999999999
Q ss_pred ceEEEEeCCe--e---eeeecccCCCHHHHHHHH
Q psy9502 196 PTLKIIRNGL--A---TRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 196 Ptl~~f~~g~--~---~~~~y~G~~~~~~l~~fi 224 (493)
|++.++.... . ......|..++++|+.++
T Consensus 88 P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 88 PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9999995332 1 123578999999999876
No 117
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.43 E-value=2.7e-06 Score=69.69 Aligned_cols=108 Identities=15% Similarity=0.299 Sum_probs=81.7
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-----CCccccccCc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-----EEPRIRDFFH 191 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~ 191 (493)
...+.|+.-+|++++...+.+||.|=... +--.-...|.++|++.... ..++.+|.|-.. +|.+|+++|+
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~---~~dLLvAeVGikDYGek~N~~Laery~ 78 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASAS---SDDLLVAEVGIKDYGEKENMELAERYK 78 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC----SSEEEEEEECBSSSS-CCHHHHHHTT
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcC---CCceEEEEeCcccccchhHHHHHHHhC
Confidence 45789999999999999999999995332 2224456788898554444 348999999775 4678999999
Q ss_pred c--ccCceEEEEeCCeeeeeec--ccCCCHHHHHHHHHHHcC
Q psy9502 192 I--TKYPTLKIIRNGLATRSEY--RSQRTTEALLNFIAEELK 229 (493)
Q Consensus 192 i--~~~Ptl~~f~~g~~~~~~y--~G~~~~~~l~~fi~~~~~ 229 (493)
| ..||.+++|..|...++.| .|..++++|..|++.++.
T Consensus 79 i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 79 IDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp -SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 9 5699999999776666778 899999999999999865
No 118
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.43 E-value=8.2e-07 Score=71.86 Aligned_cols=84 Identities=18% Similarity=0.349 Sum_probs=68.3
Q ss_pred ccCCCchhhhccC---CceEEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccC-------CCCCc-eEEecCC-Ccc
Q psy9502 233 MDLEEAPKFNVHD---KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRH-------AGPPD-VTLQTED-HTE 300 (493)
Q Consensus 233 ~~i~s~~~l~~~~---~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~-------~~~p~-ivf~~~~-~~~ 300 (493)
.++.+.++++.+. ++++||||.+.+++.+..|.++|..++ +++.|+..... ...|+ ++|++.+ .+.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r--~~~~F~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~ 79 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLR--DDYGFGHTSDKEVAKKLKVKPGSVVLFKPFEEEPV 79 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcc--cCCeEEEEChHHHHHHcCCCCCceEEeCCcccCCc
Confidence 4566777777644 889999999989999999999999999 89999887753 23455 6788765 678
Q ss_pred cccCcCChHHHHHHHHHh
Q psy9502 301 AFQGVFERSRLVQWFTEK 318 (493)
Q Consensus 301 ~y~g~~~~~~l~~wi~~~ 318 (493)
.|.|+++.++|.+||..+
T Consensus 80 ~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 80 EYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCCCCCHHHHHHHHHhC
Confidence 899998889999999764
No 119
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.42 E-value=1.3e-07 Score=78.46 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=53.4
Q ss_pred CCcceeEEEEEeecceeeeehhH--HHHHHHhhh---hhhhhhhhccCchHH----------------HHHhhhcCCCcc
Q psy9502 2 SDKTHVKLVEVESVEWVNRKTYS--VIALVLANR---ESKILLRAAQGLEDW----------------FELLEECTMTSK 60 (493)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~Fya--p~~~~~~C~---hCk~l~p~~~~~~~~----------------~~~~~~~~i~~~ 60 (493)
++..|+..+ |.+.+.+||+||| || |+ ||++|||.++++++. .+...++||..
T Consensus 6 L~~~nF~~~-v~~~~~vlV~F~A~~Pw-----c~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~- 78 (116)
T cd03007 6 LDTVTFYKV-IPKFKYSLVKFDTAYPY-----GEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK- 78 (116)
T ss_pred CChhhHHHH-HhcCCcEEEEEeCCCCC-----CCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc-
Confidence 355666664 4889999999999 99 99 999999999764321 11222444410
Q ss_pred cccceEEEecccc-cc-cCcCCCCCCCChhhHHHHHHH
Q psy9502 61 ERRKALRLYGNAF-YK-DHSSTMGDSDHLTSLSSHVDD 96 (493)
Q Consensus 61 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~fi~~ 96 (493)
...|++.++..+ .- ...| .|..++.+.|.+||.+
T Consensus 79 -~gyPTl~lF~~g~~~~~~~Y-~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 79 -ESYPVIYLFHGGDFENPVPY-SGADVTVDALQRFLKG 114 (116)
T ss_pred -CCCCEEEEEeCCCcCCCccC-CCCcccHHHHHHHHHh
Confidence 145655444433 10 1122 2323888899888875
No 120
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.39 E-value=3.5e-06 Score=68.63 Aligned_cols=100 Identities=19% Similarity=0.265 Sum_probs=81.3
Q ss_pred eeecChhcHHHHHhc-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEE
Q psy9502 323 VREITYENAEEISEE-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 323 v~elt~~n~~~l~~~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv 401 (493)
|..+|.+++.....+ +.++++.|+.+++ ..++.+...+.+.++++.+++.|+.+|+...+.. ++.+|+. ..|.++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C-~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l-~~~~~v~--~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWC-PPCKAFKPILEKLAKEYKDNVKFAKVDCDENKEL-CKKYGVK--SVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTS-HHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHH-HHHTTCS--SSSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCC-Cccccccceecccccccccccccchhhhhccchh-hhccCCC--CCCEEE
Confidence 467899999999887 8999999999988 6677777777665566677899999999988888 9999985 899999
Q ss_pred EEeCCccc-cCCCCCCCCCChhHHHHHHHH
Q psy9502 402 LDDYKHIY-RLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 402 i~~~~~~y-~~~~~~~~~~~~~~l~~Fi~d 430 (493)
+...++.. .+ .+..+++.|.+||+.
T Consensus 77 ~~~~g~~~~~~----~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVKRY----NGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEEEE----ESSSSHHHHHHHHHH
T ss_pred EEECCcEEEEE----ECCCCHHHHHHHHHc
Confidence 88876433 33 345678999999974
No 121
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.38 E-value=1.4e-06 Score=71.24 Aligned_cols=86 Identities=19% Similarity=0.323 Sum_probs=67.7
Q ss_pred cccCCCchhhhccC----CceEEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccCC-------CCCceEEe-cCC-C
Q psy9502 232 VMDLEEAPKFNVHD----KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHA-------GPPDVTLQ-TED-H 298 (493)
Q Consensus 232 ~~~i~s~~~l~~~~----~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~-------~~p~ivf~-~~~-~ 298 (493)
++.+.+.++++.+. ...+||||.+.+++.+..|.++|..++ ++|.|++..+.. ..|+++++ +.+ .
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R--~d~~F~~~~~~~~~~~~~~~~~~i~l~~~~~e~ 79 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFH--PYIKFFATFDSKVAKKLGLKMNEVDFYEPFMEE 79 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhh--cCCEEEEECcHHHHHHcCCCCCcEEEeCCCCCC
Confidence 45677777777654 588999999999999999999999999 999999988752 35665544 434 5
Q ss_pred cccc-cCcCChHHHHHHHHHhc
Q psy9502 299 TEAF-QGVFERSRLVQWFTEKC 319 (493)
Q Consensus 299 ~~~y-~g~~~~~~l~~wi~~~~ 319 (493)
...| .|.++.+.|.+||..+.
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHhc
Confidence 6679 78877799999998753
No 122
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.37 E-value=1.5e-06 Score=81.76 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=66.2
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------C----cccc-ccCc---------
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------E----PRIR-DFFH--------- 191 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~~~--------- 191 (493)
.+++++|.|||+||+.|....|.+.++++++++. ++.+..|+|+. . ...+ ++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-----Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-----GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-----CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCcccccc
Confidence 3689999999999999999999999999999654 58888888741 1 1111 1221
Q ss_pred -------------------------cccCceEEEEe-CCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 192 -------------------------ITKYPTLKIIR-NGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 192 -------------------------i~~~Ptl~~f~-~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
|...|+.+++. +|+.+ ..|.|..+.++|.+.|++.+
T Consensus 173 D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv-~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 173 DVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVV-ERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEE-EEECCCCCHHHHHHHHHHHh
Confidence 12247777774 45555 47999999999999888765
No 123
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.36 E-value=8.4e-07 Score=81.87 Aligned_cols=92 Identities=12% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------C----ccccccCcc---------
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------E----PRIRDFFHI--------- 192 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~~~i--------- 192 (493)
.+++++|.|||+||+.|++..|.+.++++++++. ++.+..|+|++ . ...++++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-----g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~ 112 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-----GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIE 112 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-----ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeee
Confidence 3689999999999999999999999999999654 68888888742 1 122333332
Q ss_pred -----------------------c----cCc---eEEEE-eCCeeeeeecccCCCHHHHHHHHHHHcCC
Q psy9502 193 -----------------------T----KYP---TLKII-RNGLATRSEYRSQRTTEALLNFIAEELKD 230 (493)
Q Consensus 193 -----------------------~----~~P---tl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~~~~ 230 (493)
. .+| +.+++ ++|.... .+.|..+.+.+.+.|.+.+..
T Consensus 113 v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~-~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 113 VNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVA-YFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred ccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEE-EeCCCCCHHHHHHHHHHHHHH
Confidence 1 122 34444 5666654 678888888888888876653
No 124
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.35 E-value=1.6e-06 Score=71.71 Aligned_cols=83 Identities=31% Similarity=0.532 Sum_probs=66.9
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-CCccccccCc--cccCceEEEEeCCeeeeee
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-EEPRIRDFFH--ITKYPTLKIIRNGLATRSE 210 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Ptl~~f~~g~~~~~~ 210 (493)
+++++|.||++||++|+.+.|.+.++++.+ ...+.+..+|.. .+..+...|+ +..+|++.++.+|.... .
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~ 104 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEY------GGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD-R 104 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHh------cCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh-h
Confidence 678999999999999999999999999998 235889999997 7888999999 99999999988887632 3
Q ss_pred ccc--CCCHHHHHHH
Q psy9502 211 YRS--QRTTEALLNF 223 (493)
Q Consensus 211 y~G--~~~~~~l~~f 223 (493)
+.| ......++.-
T Consensus 105 ~~~~~~~~~~~~~~~ 119 (127)
T COG0526 105 LVGGKVLPKEALIDA 119 (127)
T ss_pred hhhcccCCHHHHHHH
Confidence 444 3444444443
No 125
>KOG1731|consensus
Probab=98.33 E-value=1.9e-07 Score=95.07 Aligned_cols=201 Identities=12% Similarity=0.051 Sum_probs=108.4
Q ss_pred CCcceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh-hcCCCccc----ccceEEEecccc-cc
Q psy9502 2 SDKTHVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE-ECTMTSKE----RRKALRLYGNAF-YK 75 (493)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~-~~~i~~~~----~~~~~~~~~~~~-~~ 75 (493)
++.++|......+.+..+||||+.| ||||.++||.|++.++..+.-. -+.+.-.| ...+++..+++. ||
T Consensus 44 Ld~~tf~~~v~~~~~~~lVEFy~sw-----CGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 44 LDVDTFNAAVFGSRKAKLVEFYNSW-----CGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred eehhhhHHHhcccchhHHHHHHHhh-----hhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 4566666677677778889999999 9999999999988654433322 23332222 233344333333 55
Q ss_pred cCcCC--------CCCC----CChhhHHHHHHHHhccCCC--CccCCCCCCCCCCCCcEEccccc-HHHH---HcC-CCe
Q psy9502 76 DHSST--------MGDS----DHLTSLSSHVDDWLLSRNP--VLCTHPLHYTNNTTRVKYLRQNN-FTEV---LSQ-YKL 136 (493)
Q Consensus 76 ~~~~~--------~~~~----~~~~~l~~fi~~~~~~~~~--~~~s~~~p~~~~~~~v~~l~~~n-f~~~---l~~-~~~ 136 (493)
...|+ .|.. ....++.+++..-++.... ...+-|. .-.+.+.+ +.++ +.+ .+.
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~--------f~pl~~~~~~~~l~~~~~~~~~y 190 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPN--------FDPLKDTTTLEELDEGISTTANY 190 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCC--------CCCCCCcchHHHHhcccccccce
Confidence 54222 1222 2234555555444433311 1112220 01122221 1222 211 234
Q ss_pred EEEEE-EcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCC
Q psy9502 137 AVVNF-YADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQR 215 (493)
Q Consensus 137 ~lV~F-ya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~ 215 (493)
+-|.| ..+. .=.|+.+-..+.. +.+.+..+-++++..+.+ ++++..|+..+|++|...+ -+....
T Consensus 191 vAiv~e~~~s-------~lg~~~~l~~l~~-----~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~-l~~~~~ 256 (606)
T KOG1731|consen 191 VAIVFETEPS-------DLGWANLLNDLPS-----KQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQP-LWPSSS 256 (606)
T ss_pred eEEEEecCCc-------ccHHHHHHhhccC-----CCcceEEEecchhccccc-cCCCCchhhhhhcCCcccc-cccccc
Confidence 55545 3332 2345555555432 356667776777766666 9999999999999999875 344444
Q ss_pred CHHHHHHHHHHHcC
Q psy9502 216 TTEALLNFIAEELK 229 (493)
Q Consensus 216 ~~~~l~~fi~~~~~ 229 (493)
+.+..++-|.+.++
T Consensus 257 s~~~y~~~I~~~lg 270 (606)
T KOG1731|consen 257 SRSAYVKKIDDLLG 270 (606)
T ss_pred cHHHHHHHHHHHhc
Confidence 55455555555544
No 126
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.33 E-value=7.9e-06 Score=66.64 Aligned_cols=99 Identities=7% Similarity=-0.018 Sum_probs=78.0
Q ss_pred CceeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeE
Q psy9502 321 PLVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVL 400 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~i 400 (493)
|.+.++|.+++......+++++|.|+.+++ ..++.+...+.+.++++++.+.|+.+|++..+.. ++.+++. .+|.+
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a~wC-~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYSPRC-SHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML-CRSQGVN--SYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEECCCC-hHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH-HHHcCCC--ccCEE
Confidence 457889999999999888999999999998 4577777766655567788899999999998888 9999984 89999
Q ss_pred EEEeCCc-cccCCCCCCCCCChhHHHHH
Q psy9502 401 RLDDYKH-IYRLPSLITLAENPSTLVSI 427 (493)
Q Consensus 401 vi~~~~~-~y~~~~~~~~~~~~~~l~~F 427 (493)
++...+. ... +.+..+.+.|.+|
T Consensus 77 ~~~~~g~~~~~----~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEK----YYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCccc----CCCCCCHHHHHhh
Confidence 8876553 233 3345566778776
No 127
>PLN02412 probable glutathione peroxidase
Probab=98.30 E-value=4.8e-06 Score=74.73 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=65.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------C-cc----ccccCc---------
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------E-PR----IRDFFH--------- 191 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------~-~~----l~~~~~--------- 191 (493)
.+++++|.||++||+.|++..|.+.++.+++++. ++.+..|+|+. . .+ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-----g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~ 102 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-----GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKV 102 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-----CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEE
Confidence 3689999999999999999999999999999754 58888887742 1 01 112222
Q ss_pred -------------------------cccCceEEEE-eCCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 192 -------------------------ITKYPTLKII-RNGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 192 -------------------------i~~~Ptl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
|...|+.+++ ++|+... .+.|..+.++|...|.+.+.
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~-~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 103 DVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ-RYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred eeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE-EECCCCCHHHHHHHHHHHHh
Confidence 3334777777 4455544 78899999999888887653
No 128
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.29 E-value=6.8e-08 Score=78.80 Aligned_cols=36 Identities=11% Similarity=0.070 Sum_probs=30.7
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE 53 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~ 53 (493)
.+++.++|.||||| |+||+.++|.++++++.+..+.
T Consensus 16 ~~g~~vlV~F~a~W-----C~~C~~~~p~l~~la~~~~~~~ 51 (100)
T cd02999 16 NREDYTAVLFYASW-----CPFSASFRPHFNALSSMFPQIR 51 (100)
T ss_pred cCCCEEEEEEECCC-----CHHHHhHhHHHHHHHHHhccCc
Confidence 57899999999999 9999999999999876655433
No 129
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.29 E-value=1.6e-06 Score=65.94 Aligned_cols=68 Identities=16% Similarity=0.295 Sum_probs=52.5
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc----ccccCccccCceEEEEeCCeeeeeeccc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR----IRDFFHITKYPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Ptl~~f~~g~~~~~~y~G 213 (493)
+..|+++||++|++..+.+++. ++.+..+|.++++. +++.+++.++|++.+. |.. ..|
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~----~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI----IVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE----Eee
Confidence 4679999999999998887651 67888999987754 4567899999999874 542 445
Q ss_pred CCCHHHHHHHH
Q psy9502 214 QRTTEALLNFI 224 (493)
Q Consensus 214 ~~~~~~l~~fi 224 (493)
.+.+.|.+|+
T Consensus 64 -~~~~~i~~~i 73 (74)
T TIGR02196 64 -FDPEKLDQLL 73 (74)
T ss_pred -CCHHHHHHHh
Confidence 4677888776
No 130
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.27 E-value=4.9e-06 Score=72.76 Aligned_cols=79 Identities=24% Similarity=0.342 Sum_probs=59.6
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------CccccccC
Q psy9502 133 QYKLAVVNFYAD-WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------EPRIRDFF 190 (493)
Q Consensus 133 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~ 190 (493)
.+++++|.||++ ||++|+.-.|.+.++++.++.. ++.+..|..+. +..+.+.|
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-----~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 101 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-----GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKAL 101 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHT
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-----ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHh
Confidence 478999999999 9999999999999999887654 56666555443 23577888
Q ss_pred ccc---------cCceEEEEeCCeeeeeecccCCC
Q psy9502 191 HIT---------KYPTLKIIRNGLATRSEYRSQRT 216 (493)
Q Consensus 191 ~i~---------~~Ptl~~f~~g~~~~~~y~G~~~ 216 (493)
++. ++|+++++.....+...+.|...
T Consensus 102 ~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 102 GVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred CCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 988 99999888654444335556544
No 131
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.26 E-value=2.8e-06 Score=61.82 Aligned_cols=60 Identities=37% Similarity=0.806 Sum_probs=51.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccc---cCccccCceEEEEeCC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD---FFHITKYPTLKIIRNG 204 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Ptl~~f~~g 204 (493)
++.||++||++|+++.+.+.++ ... .+++.+..++++....... .+++.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL------NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh------CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 222 3589999999999876665 7899999999999887
No 132
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.23 E-value=4.7e-06 Score=76.39 Aligned_cols=85 Identities=20% Similarity=0.284 Sum_probs=56.3
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe-------------C-----CCCccccccCcccc
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN-------------C-----DEEPRIRDFFHITK 194 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~ 194 (493)
.+++++|.|||+||+.|++..|.+.++.+.. .-++.+...| . ....++.+.|++.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~ 146 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGK 146 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCc
Confidence 4689999999999999999999999887653 1134333211 0 01235678899999
Q ss_pred CceEEEEe-CCeeeeeecccC-CCHHHHHHHHHH
Q psy9502 195 YPTLKIIR-NGLATRSEYRSQ-RTTEALLNFIAE 226 (493)
Q Consensus 195 ~Ptl~~f~-~g~~~~~~y~G~-~~~~~l~~fi~~ 226 (493)
.|+.+++. +|... +.|. .+.+.+-+.+..
T Consensus 147 ~P~~~lID~~G~I~---~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 147 IPYGVLLDQDGKIR---AKGLTNTREHLESLLEA 177 (189)
T ss_pred cceEEEECCCCeEE---EccCCCCHHHHHHHHHH
Confidence 99988875 45433 4554 344555555543
No 133
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.23 E-value=1e-05 Score=66.30 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=76.7
Q ss_pred CceeecChhcHHHHH-hcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCe
Q psy9502 321 PLVREITYENAEEIS-EEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPV 399 (493)
Q Consensus 321 P~v~elt~~n~~~l~-~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ 399 (493)
|.+.++|.+++.++. ..+.+++|.|+.+++ ..++.+...+.+.++++.+.+.|+.+|++..... ++.+|+. .+|.
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC-~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~i~--~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYAPWC-GPCQALLPELRKAARALKGKVKVGSVDCQKYESL-CQQANIR--AYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEECCCC-HHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHH-HHHcCCC--cccE
Confidence 457889999999875 456789999999988 5667777666655566778899999999998888 8999985 7999
Q ss_pred EEEEeCC--ccccCCCCCCCCCC-hhHHHHHH
Q psy9502 400 LRLDDYK--HIYRLPSLITLAEN-PSTLVSIV 428 (493)
Q Consensus 400 ivi~~~~--~~y~~~~~~~~~~~-~~~l~~Fi 428 (493)
+++...+ ..+.|. +..+ .+.|.+||
T Consensus 77 ~~~~~~g~~~~~~~~----G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYN----GWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEcc----CCCCCHHHHHhhC
Confidence 8887764 344443 3333 67888875
No 134
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.20 E-value=3.6e-06 Score=69.39 Aligned_cols=86 Identities=19% Similarity=0.415 Sum_probs=67.9
Q ss_pred CcccCCCchhhhccC----CceEEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccCC-------CCCc-eEEecCC-
Q psy9502 231 PVMDLEEAPKFNVHD----KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHA-------GPPD-VTLQTED- 297 (493)
Q Consensus 231 ~~~~i~s~~~l~~~~----~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~-------~~p~-ivf~~~~- 297 (493)
+++++.+.++++.+. ...+||||.+.+++.+..|.++|..++ ++|.|++..+.. ..|. ++|++..
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~R--dd~~F~~t~~~~~~~~~~~~~~~vvl~rp~~~ 78 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLR--EDYKFHHTFDSEIFKSLKVSPGQLVVFQPEKF 78 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcc--cCCEEEEEChHHHHHhcCCCCCceEEECcHHH
Confidence 356778888888753 588999999988889999999999999 999999877642 2444 6786654
Q ss_pred ------CcccccCc-CCh-HHHHHHHHHh
Q psy9502 298 ------HTEAFQGV-FER-SRLVQWFTEK 318 (493)
Q Consensus 298 ------~~~~y~g~-~~~-~~l~~wi~~~ 318 (493)
....|.|. ++. ++|..||..|
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 56889988 677 5599999864
No 135
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.19 E-value=7.6e-06 Score=66.15 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=72.9
Q ss_pred Ecccc-cHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE
Q psy9502 121 YLRQN-NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK 199 (493)
Q Consensus 121 ~l~~~-nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~ 199 (493)
.+++. .++.++..++.++|.|++++|+ .....|.++|+.+ ++.+.||.+. +.++.+++++.. |++.
T Consensus 3 ~i~s~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~------r~~~~F~~~~---~~~~~~~~~~~~-~~i~ 69 (97)
T cd02981 3 ELTSKEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESL------RDDYGFGHTS---DKEVAKKLKVKP-GSVV 69 (97)
T ss_pred ecCCHHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhc------ccCCeEEEEC---hHHHHHHcCCCC-CceE
Confidence 45443 3556788889999999999976 5788999999998 3468888776 456777777765 9999
Q ss_pred EEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 200 IIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 200 ~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
+|++.......|.|..+.++|.+||..
T Consensus 70 l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 70 LFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred EeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 998764444579999999999999975
No 136
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.15 E-value=1.6e-05 Score=71.55 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=70.9
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-----------------------------C
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-----------------------------E 183 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-----------------------------~ 183 (493)
.+++++|.||++||+.|....+.+.++++++.+. ++.+..|+++. +
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-----~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~ 98 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-----GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDET 98 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-----CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCc
Confidence 5689999999999999999999999999998643 68888887753 1
Q ss_pred ccccccCccccCceEEEEe-CCeeeee-ec-------ccCCCHHHHHHHHHHHcCCCccc
Q psy9502 184 PRIRDFFHITKYPTLKIIR-NGLATRS-EY-------RSQRTTEALLNFIAEELKDPVMD 234 (493)
Q Consensus 184 ~~l~~~~~i~~~Ptl~~f~-~g~~~~~-~y-------~G~~~~~~l~~fi~~~~~~~~~~ 234 (493)
..+++.|++...|+++++. +|+.... .+ .+..+.+++.+-|+..+...-.+
T Consensus 99 ~~~~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 158 (171)
T cd02969 99 QEVAKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVP 158 (171)
T ss_pred hHHHHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCC
Confidence 2356678899999999996 4543321 01 12345678888888877655443
No 137
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.15 E-value=9.4e-06 Score=71.69 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=62.7
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------C----cccccc-Cc---------
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------E----PRIRDF-FH--------- 191 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~--------- 191 (493)
.+++++|.|||+||+.|+.-.|.+.+++++++.. ++.+..|+|.. . ...+++ ++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-----~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~ 95 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-----HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKI 95 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-----CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceE
Confidence 3678999999999999999999999999999654 68888888721 0 111211 11
Q ss_pred --------------c---ccCce----EEEE-eCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 192 --------------I---TKYPT----LKII-RNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 192 --------------i---~~~Pt----l~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+ .++|+ .+++ ++|+... .|.|..+.++|...|++.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~-~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 96 KILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVK-FWRPEEPVEEIRPEITAL 152 (153)
T ss_pred ecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEE-EECCCCCHHHHHHHHHHh
Confidence 1 13675 4555 5566554 788998888888877654
No 138
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.13 E-value=6.5e-06 Score=63.27 Aligned_cols=69 Identities=14% Similarity=0.300 Sum_probs=49.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccccc-----CccccCceEEEEeCCeeeeeecc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF-----FHITKYPTLKIIRNGLATRSEYR 212 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Ptl~~f~~g~~~~~~y~ 212 (493)
++.|+++||++|+++++.+.++ ++.+-.+|.++++..... +++.+.|++ ++.+|....
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~------------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~---- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL------------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT---- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc------------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec----
Confidence 5789999999999999988664 455667888877665555 388899998 567775432
Q ss_pred cCCCHHHHHHHH
Q psy9502 213 SQRTTEALLNFI 224 (493)
Q Consensus 213 G~~~~~~l~~fi 224 (493)
..+..++.+.+
T Consensus 65 -~~~~~~~~~~l 75 (77)
T TIGR02200 65 -NPSAAQVKAKL 75 (77)
T ss_pred -CCCHHHHHHHh
Confidence 33444555544
No 139
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.12 E-value=5e-06 Score=73.39 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=36.4
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
+++++|+|||+||+ |..-.|.+.++++++++. ++.+..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-----~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-----GLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-----CEEEEEeccC
Confidence 68999999999999 999999999999998643 5778878763
No 140
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.12 E-value=2e-05 Score=75.50 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=77.2
Q ss_pred CCCcEEccc-ccHHHHHcC---CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc
Q psy9502 116 TTRVKYLRQ-NNFTEVLSQ---YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH 191 (493)
Q Consensus 116 ~~~v~~l~~-~nf~~~l~~---~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 191 (493)
-+.|..|+. +.|.+.+.. ...|+|.||.+.++-|..+...+..||.++ ..+.|.+|....-+ ++.+|.
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~ky-------p~vKFvkI~a~~~~-~~~~f~ 195 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKY-------PEVKFVKIRASKCP-ASENFP 195 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH--------TTSEEEEEEECGCC-TTTTS-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhC-------CceEEEEEehhccC-cccCCc
Confidence 367899964 788888754 347899999999999999999999999997 48999999987654 788999
Q ss_pred cccCceEEEEeCCeeeeeecc------c-CCCHHHHHHHHHHHcC
Q psy9502 192 ITKYPTLKIIRNGLATRSEYR------S-QRTTEALLNFIAEELK 229 (493)
Q Consensus 192 i~~~Ptl~~f~~g~~~~~~y~------G-~~~~~~l~~fi~~~~~ 229 (493)
+...|||++|++|.... .+- | ..+.++|-.|+.++--
T Consensus 196 ~~~LPtllvYk~G~l~~-~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 196 DKNLPTLLVYKNGDLIG-NFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp TTC-SEEEEEETTEEEE-EECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred ccCCCEEEEEECCEEEE-eEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 99999999999998754 222 2 3567888888887654
No 141
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.09 E-value=1.2e-05 Score=72.44 Aligned_cols=81 Identities=10% Similarity=0.107 Sum_probs=58.2
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEE------EEEeCCC------------------------
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVV------AQINCDE------------------------ 182 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~------~~vd~~~------------------------ 182 (493)
.+++++|+|||.||+.|+.-.|.+++++.+ ++.+ ..||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~---------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~ 128 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA---------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQ 128 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc---------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcce
Confidence 379999999999999999999999999543 2333 3444332
Q ss_pred -----CccccccCccccCceE-EEEeCCeeeeeecccCCCHHHHHH
Q psy9502 183 -----EPRIRDFFHITKYPTL-KIIRNGLATRSEYRSQRTTEALLN 222 (493)
Q Consensus 183 -----~~~l~~~~~i~~~Ptl-~~f~~g~~~~~~y~G~~~~~~l~~ 222 (493)
+..+...|++.+.|+- +++.....+...+.|..+.+++.+
T Consensus 129 vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 129 VVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred EEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 2235567889999877 677544444447899988877755
No 142
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.07 E-value=1.8e-05 Score=73.70 Aligned_cols=82 Identities=17% Similarity=0.271 Sum_probs=67.1
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-----------CCccccccCccccCceEEEEe
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-----------EEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
++.-||.||.+.|++|+.+.|++..+++++ ++.+.-|+.+ .+..+.++++|..+|+++++.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y--------g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~ 191 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY--------GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVN 191 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh--------CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEE
Confidence 678999999999999999999999999998 6777777665 346788999999999999997
Q ss_pred CCe-eeeeecccCCCHHHHHHH
Q psy9502 203 NGL-ATRSEYRSQRTTEALLNF 223 (493)
Q Consensus 203 ~g~-~~~~~y~G~~~~~~l~~f 223 (493)
.+. .....-.|..+.++|.+=
T Consensus 192 ~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 192 PNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCCCeEEEEeeecCCHHHHHHh
Confidence 655 222234688999888763
No 143
>KOG2603|consensus
Probab=98.04 E-value=2.4e-05 Score=74.29 Aligned_cols=119 Identities=17% Similarity=0.287 Sum_probs=94.8
Q ss_pred CCCCcEEcccccHHHHHcCC---CeEEEEEEcC----CChhHhhhhHHHHHHHHHHhhcCCCCC--CeEEEEEeCCCCcc
Q psy9502 115 NTTRVKYLRQNNFTEVLSQY---KLAVVNFYAD----WCRFCHLLKPVLEETAAIVDTQYPQDN--QVVVAQINCDEEPR 185 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l~~~---~~~lV~Fya~----wC~~C~~l~p~~~~~a~~~~~~~~~~~--~v~~~~vd~~~~~~ 185 (493)
.+.+|+.+++++|..++... -.++|+|.|. .|.-|+....+|.-+|+.+....+... ++-|+.||.++-++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34679999999999988653 3677888876 599999999999999999988876444 78999999999999
Q ss_pred ccccCccccCceEEEEeCCeeee---eecc---cCCCHHHHHHHHHHHcCCCcc
Q psy9502 186 IRDFFHITKYPTLKIIRNGLATR---SEYR---SQRTTEALLNFIAEELKDPVM 233 (493)
Q Consensus 186 l~~~~~i~~~Ptl~~f~~g~~~~---~~y~---G~~~~~~l~~fi~~~~~~~~~ 233 (493)
+.+.++++..|++++|.+..... ..+. -...+|++.+|+.+.+.-.+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 99999999999999995432211 1222 234589999999998765444
No 144
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.03 E-value=2e-05 Score=60.64 Aligned_cols=73 Identities=21% Similarity=0.407 Sum_probs=56.6
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeeccc-CCCH
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRS-QRTT 217 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G-~~~~ 217 (493)
|.+++++|++|..+...+.+++..+ ++.+-.+|....+++ .+|+|.+.|+++ -+|+. .|.| ..+.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~--------~i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~~---~~~G~~p~~ 68 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL--------GIEVEIIDIEDFEEI-EKYGVMSVPALV--INGKV---VFVGRVPSK 68 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT--------TEEEEEEETTTHHHH-HHTT-SSSSEEE--ETTEE---EEESS--HH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc--------CCeEEEEEccCHHHH-HHcCCCCCCEEE--ECCEE---EEEecCCCH
Confidence 3447888999999999999998887 477777777666666 999999999994 47764 4889 6788
Q ss_pred HHHHHHHH
Q psy9502 218 EALLNFIA 225 (493)
Q Consensus 218 ~~l~~fi~ 225 (493)
+.|.+|++
T Consensus 69 ~el~~~l~ 76 (76)
T PF13192_consen 69 EELKELLE 76 (76)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 89988874
No 145
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.02 E-value=7e-05 Score=60.99 Aligned_cols=98 Identities=10% Similarity=0.001 Sum_probs=74.1
Q ss_pred eeecChhcHHHHHhc-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEE
Q psy9502 323 VREITYENAEEISEE-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 323 v~elt~~n~~~l~~~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv 401 (493)
|.+++.+++.+.... +.++++.|+.+++ ..++.+...+.+.++++.+.+.|+.+|+...... ++.+|+. ..|.++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C-~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~i~--~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWC-GHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSL-AQQYGVR--GFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCC-HHHHHHhHHHHHHHHHhcCCceEEEEECcchHHH-HHHCCCC--ccCEEE
Confidence 568899999988654 5568999998887 5667776666554466678899999999988888 8999995 799988
Q ss_pred EEeCC--ccccCCCCCCCCCChhHHHHHH
Q psy9502 402 LDDYK--HIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 402 i~~~~--~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+...+ ..+.|. +..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~----g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQ----GGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecC----CCCCHHHHHHHh
Confidence 87765 334443 345668888886
No 146
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.01 E-value=6.4e-05 Score=70.28 Aligned_cols=106 Identities=10% Similarity=0.086 Sum_probs=83.2
Q ss_pred CceeecChhcHHHHHhc-----CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCC
Q psy9502 321 PLVREITYENAEEISEE-----GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSD 395 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~-----~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~ 395 (493)
..+.++|.+|++++... +.+++|.|+.+++ ..++.+...+.+.++++++.+.|+.+|++..+.. .+.+|+.
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC-~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l-~~~~~I~-- 105 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWC-SHCRKMAPAWERLAKALKGQVNVADLDATRALNL-AKRFAIK-- 105 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCC-hHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH-HHHcCCC--
Confidence 35889999999998643 4799999999998 4567666666554467788899999999998888 8999985
Q ss_pred CCCeEEEEeCCccccCCCCCCCCCChhHHHHHHHHHHc
Q psy9502 396 DLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFS 433 (493)
Q Consensus 396 ~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~s 433 (493)
.+|.+++...+..+.+. .+..+.+.|.+|+..-..
T Consensus 106 ~~PTl~~f~~G~~v~~~---~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYE---GGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCEEEEEECCEEEEee---CCCCCHHHHHHHHHHHHH
Confidence 79999988877665543 344567899999988763
No 147
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.97 E-value=7.2e-05 Score=60.68 Aligned_cols=98 Identities=9% Similarity=0.083 Sum_probs=73.5
Q ss_pred cChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC--cEEEEEEeCcccchhhhhccCCCCCCCCeEEEE
Q psy9502 326 ITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ--NLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLD 403 (493)
Q Consensus 326 lt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~--~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~ 403 (493)
|+.+++.+....+.+++|.|+.+++ ..++.+...+++.+..+++ ++.|+.+|+...+.. .+.+|+. ..|.+++.
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C-~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~i~--~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWC-GHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDL-ASRFGVS--GFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCC-HHHHhhChHHHHHHHHhccCCceEEEEEEccchHHH-HHhCCCC--cCCEEEEe
Confidence 4677888888888999999999988 4456555555444444454 699999999988888 8889984 79999887
Q ss_pred eCCc-cccCCCCCCCCCChhHHHHHHHHH
Q psy9502 404 DYKH-IYRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 404 ~~~~-~y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
..+. .+.| .+..+.+.|.+||+..
T Consensus 77 ~~~~~~~~~----~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDY----EGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceee----cCCCCHHHHHHHHHhc
Confidence 7665 4444 3345678899998763
No 148
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.97 E-value=7.8e-05 Score=61.55 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=71.8
Q ss_pred ceeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhh----cC--CcEEEEEEeCcccchhhhhccCCCCC
Q psy9502 322 LVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQ----YA--QNLSFVTADDLFYQRIFYHHLHLSSD 395 (493)
Q Consensus 322 ~v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~----~~--~~i~f~~~d~~~~~~~~l~~lgi~~~ 395 (493)
.|.+++.+|+++....+++++|.|+.+++. .++.+...+.+.++. +. +++.|+.+|++..... ++.+|+.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~-~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l-~~~~~v~-- 77 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCR-FSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDI-ADRYRIN-- 77 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCH-HHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHH-HHhCCCC--
Confidence 367899999999998889999999999984 445454444333222 22 3699999999998888 9999995
Q ss_pred CCCeEEEEeCCc--cccCCCCCCCCCChhHHHHHH
Q psy9502 396 DLPVLRLDDYKH--IYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 396 ~~P~ivi~~~~~--~y~~~~~~~~~~~~~~l~~Fi 428 (493)
.+|.+.+...+. ...| .+..+.+.|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~----~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREY----RGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceec----CCCCCHHHHHhhC
Confidence 789998876654 2333 3344567788775
No 149
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.91 E-value=5.1e-05 Score=64.12 Aligned_cols=70 Identities=26% Similarity=0.438 Sum_probs=56.8
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------CccccccC
Q psy9502 133 QYKLAVVNFYAD-WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------EPRIRDFF 190 (493)
Q Consensus 133 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~ 190 (493)
.+++++|.||+. ||++|+...+.+.++..+++.. ++.+..|..+. +..+++.|
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-----~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 98 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-----GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAF 98 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-----TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHT
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-----eEEeeecccccccchhhhhhhhccccccccCcchHHHHHc
Confidence 468999999999 9999999999999999999754 68888777654 23566778
Q ss_pred ccc------cCceEEEEeCCeee
Q psy9502 191 HIT------KYPTLKIIRNGLAT 207 (493)
Q Consensus 191 ~i~------~~Ptl~~f~~g~~~ 207 (493)
++. .+|+++++..+..+
T Consensus 99 ~~~~~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 99 GIEDEKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TCEETTTSEESEEEEEEETTSBE
T ss_pred CCccccCCceEeEEEEECCCCEE
Confidence 887 88988888766544
No 150
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.88 E-value=0.00011 Score=61.65 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=72.4
Q ss_pred ceeecChhcHHHHHhcCC-cEEEEEEeCCCcc-hHH--HHHHHHHHHhhhc--CCcEEEEEEeCcccchhhhhccCCCCC
Q psy9502 322 LVREITYENAEEISEEGR-PLLILCHRHGDLT-SVA--IFKRIVRDTIGQY--AQNLSFVTADDLFYQRIFYHHLHLSSD 395 (493)
Q Consensus 322 ~v~elt~~n~~~l~~~~~-p~lilf~~~~d~~-~~~--~~~~~~~~~~~~~--~~~i~f~~~d~~~~~~~~l~~lgi~~~ 395 (493)
.|.++|.+||++...+.. ++++.|...++.. .++ ....++.+.+.++ .+++.|+.+|++..+.. .+.+|+.
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L-a~~~~I~-- 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV-AKKLGLD-- 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH-HHHcCCc--
Confidence 477899999998876655 5555555555421 255 3332223333444 56799999999999988 9999995
Q ss_pred CCCeEEEEeCCccccCCCCCCCCCChhHHHHHHHHHH
Q psy9502 396 DLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 396 ~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
.+|++++...++...| .+..+.+.|.+||+++.
T Consensus 87 ~iPTl~lfk~G~~v~~----~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIEY----DGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEEe----eCCCCHHHHHHHHHHHh
Confidence 8999998877654433 34457899999999875
No 151
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.86 E-value=0.00017 Score=59.49 Aligned_cols=98 Identities=11% Similarity=0.056 Sum_probs=73.0
Q ss_pred eeecChhcHHHHHh-cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcc--cchhhhhccCCCCCCCCe
Q psy9502 323 VREITYENAEEISE-EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLF--YQRIFYHHLHLSSDDLPV 399 (493)
Q Consensus 323 v~elt~~n~~~l~~-~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~--~~~~~l~~lgi~~~~~P~ 399 (493)
|.+++.+++..... .++++++.|+.+++ ..++.+...+.+.++++.+.+.|+.+|++. .... ++.+|+. ..|.
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC-~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~-~~~~~i~--~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWC-GHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPL-CGKYGVQ--GFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCC-HHHHhhChHHHHHHHHhcCCceEEEEecCccccHHH-HHHcCCC--cCCE
Confidence 56899999998764 57789999999988 456666555554445667779999999987 6777 8889985 7899
Q ss_pred EEEEeCCc------cccCCCCCCCCCChhHHHHHH
Q psy9502 400 LRLDDYKH------IYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 400 ivi~~~~~------~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+++...++ .+.| .+..+.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~----~G~~~~~~l~~fi 108 (109)
T cd03002 78 LKVFRPPKKASKHAVEDY----NGERSAKAIVDFV 108 (109)
T ss_pred EEEEeCCCcccccccccc----cCccCHHHHHHHh
Confidence 99887764 2333 3445678888887
No 152
>PRK10996 thioredoxin 2; Provisional
Probab=97.86 E-value=0.00018 Score=62.35 Aligned_cols=102 Identities=13% Similarity=0.171 Sum_probs=77.0
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRL 402 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi 402 (493)
+.+++.++++++..++++++|.|+.+++ ..++.+...+.+...++.+++.|+.+|....+.. .+.+|+. .+|.+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC-~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l-~~~~~V~--~~Ptlii 112 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWC-GPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL-SARFRIR--SIPTIMI 112 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCC-HHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH-HHhcCCC--ccCEEEE
Confidence 4467888999998889999999999998 4455555555443355677899999999988888 8999985 7999988
Q ss_pred EeCCccccCCCCCCCCCChhHHHHHHHHH
Q psy9502 403 DDYKHIYRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 403 ~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
...++.... ..+..+.+.|.+||+..
T Consensus 113 ~~~G~~v~~---~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 113 FKNGQVVDM---LNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EECCEEEEE---EcCCCCHHHHHHHHHHh
Confidence 776543321 23446778899999864
No 153
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.86 E-value=0.00011 Score=61.00 Aligned_cols=106 Identities=12% Similarity=0.026 Sum_probs=83.0
Q ss_pred cEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCcccc--Cc
Q psy9502 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK--YP 196 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P 196 (493)
|.++|.+|...+..++-+..+.|+.+ ..-..+...+.++|+.+.+. +|++.|+.+|.++.....+.+|+++ .|
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~---kgki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISE---KGAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhc---CceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 45788999999888877777677733 33477899999999994333 5789999999999877899999987 89
Q ss_pred eEEEEeCCeeeeee-cccCCCHHHHHHHHHHHcC
Q psy9502 197 TLKIIRNGLATRSE-YRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 197 tl~~f~~g~~~~~~-y~G~~~~~~l~~fi~~~~~ 229 (493)
.+++.......... +.+..+.++|.+|+.+...
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 99998764422323 5688999999999998664
No 154
>KOG2501|consensus
Probab=97.83 E-value=3.9e-05 Score=66.28 Aligned_cols=71 Identities=20% Similarity=0.454 Sum_probs=55.9
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------------------------ccccc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------------------------PRIRD 188 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~l~~ 188 (493)
++.+.++|-|.||++|+.|-|.+.++.+++++... .+-+.-|+.+.+ .++++
T Consensus 33 gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~---~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ 109 (157)
T KOG2501|consen 33 GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAA---PFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSE 109 (157)
T ss_pred CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCC---ceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHH
Confidence 59999999999999999999999999999988743 454454544432 35788
Q ss_pred cCccccCceEEEEeC-Ceee
Q psy9502 189 FFHITKYPTLKIIRN-GLAT 207 (493)
Q Consensus 189 ~~~i~~~Ptl~~f~~-g~~~ 207 (493)
+|+|.+.|++++... |..+
T Consensus 110 ky~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 110 KYEVKGIPALVILKPDGTVV 129 (157)
T ss_pred hcccCcCceeEEecCCCCEe
Confidence 999999999988854 5443
No 155
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.82 E-value=7.7e-05 Score=64.57 Aligned_cols=81 Identities=15% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------CccccccCc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------EPRIRDFFH 191 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~ 191 (493)
+++++|.|| +.||+.|....+.+.++.+++.+. ++.+..|..+. +..+.+.|+
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~-----~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL-----GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYG 97 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC-----CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 688999999 589999999999999999988653 45666554432 235667788
Q ss_pred cccC---------ceEEEEeC-CeeeeeecccCCCHHHH
Q psy9502 192 ITKY---------PTLKIIRN-GLATRSEYRSQRTTEAL 220 (493)
Q Consensus 192 i~~~---------Ptl~~f~~-g~~~~~~y~G~~~~~~l 220 (493)
+... |+.+++.. |+... .|.|....+.+
T Consensus 98 v~~~~~~~~~~~~p~~~lid~~G~v~~-~~~g~~~~~~~ 135 (140)
T cd03017 98 VWGEKKKKYMGIERSTFLIDPDGKIVK-VWRKVKPKGHA 135 (140)
T ss_pred CccccccccCCcceeEEEECCCCEEEE-EEecCCccchH
Confidence 8877 88888864 55544 67776544443
No 156
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.81 E-value=0.00021 Score=57.35 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=72.0
Q ss_pred ecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhc--CCcEEEEEEeCcccchhhhhccCCCCCCCCeEEE
Q psy9502 325 EITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQY--AQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRL 402 (493)
Q Consensus 325 elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~--~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi 402 (493)
+++..++.....++.+++++|+.+++ ..++.+...+.+.+..+ .+.+.|+.+|+...... .+.+|+. ..|.+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C-~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~i~--~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWC-GHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDL-CSEYGVR--GYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCC-HHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHH-HHhCCCC--CCCEEEE
Confidence 57788899998888899999999887 45666666555544555 57899999999987778 8999995 7899888
Q ss_pred EeCC--ccccCCCCCCCCCChhHHHHHH
Q psy9502 403 DDYK--HIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 403 ~~~~--~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
.+.+ ....| .+..+.+.|.+|+
T Consensus 78 ~~~~~~~~~~~----~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKY----EGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccC----CCCcCHHHHHhhC
Confidence 7766 33443 3344667777764
No 157
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.81 E-value=0.00017 Score=65.75 Aligned_cols=43 Identities=19% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCe-EEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 134 YKL-AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 134 ~~~-~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
+++ +++.+||+||+.|+.-.|.+.++.+++++. ++.+..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-----gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-----GLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-----CcEEEEEecc
Confidence 554 455669999999999999999999999654 5888888764
No 158
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.80 E-value=0.00017 Score=57.26 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=67.2
Q ss_pred ecChhcHHHHHhcCCcEEEEEEeCCCcc---hHHHHHHHHHHHh-hhcC--C---cEEEEEEeCcccchhhh-hccCCCC
Q psy9502 325 EITYENAEEISEEGRPLLILCHRHGDLT---SVAIFKRIVRDTI-GQYA--Q---NLSFVTADDLFYQRIFY-HHLHLSS 394 (493)
Q Consensus 325 elt~~n~~~l~~~~~p~lilf~~~~d~~---~~~~~~~~~~~~~-~~~~--~---~i~f~~~d~~~~~~~~l-~~lgi~~ 394 (493)
+||..+.-.+.+ .|.+|+|.+.++.. ..+.+.+.++... ++++ + -+.|+..--.+...+ + ...++.
T Consensus 3 ~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede~tds-LRDf~nL~- 78 (116)
T cd03071 3 ELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDDMTDS-LRDYTNLP- 78 (116)
T ss_pred cccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccchHHHH-HHHhcCCC-
Confidence 466666666655 69999999988753 3445555555443 3333 2 256666544456677 5 445555
Q ss_pred CCCCeEEEEeC--CccccCCCCCCCCCChhHHHHHHHHHH
Q psy9502 395 DDLPVLRLDDY--KHIYRLPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 395 ~~~P~ivi~~~--~~~y~~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
+..|+++|.+- +.+|..+. +..|++++.+||.+|+
T Consensus 79 d~~P~LviLDip~r~~~v~~~---eeIT~e~~~~fv~~yl 115 (116)
T cd03071 79 EAAPLLTILDMSARAKYVMDV---EEITPAIVEAFVSDFL 115 (116)
T ss_pred ccCceEEEEeccccceEeCch---HhcCHHHHHHHHHHhh
Confidence 67899998775 56788763 4567899999999986
No 159
>PHA02278 thioredoxin-like protein
Probab=97.79 E-value=2.9e-06 Score=69.36 Aligned_cols=30 Identities=10% Similarity=-0.092 Sum_probs=27.1
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
.+++.++|+||||| |++|+.++|.++++++
T Consensus 12 ~~~~~vvV~F~A~W-----CgpCk~m~p~l~~l~~ 41 (103)
T PHA02278 12 RQKKDVIVMITQDN-----CGKCEILKSVIPMFQE 41 (103)
T ss_pred hCCCcEEEEEECCC-----CHHHHhHHHHHHHHHh
Confidence 57889999999999 9999999999988754
No 160
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.79 E-value=0.00031 Score=55.87 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=78.6
Q ss_pred CceeecChhcHHHHHhc--CCcEEEEEEeCCCcchHHHHHHHHHHHhhhc--CCcEEEEEEeCcccchhhhh----ccCC
Q psy9502 321 PLVREITYENAEEISEE--GRPLLILCHRHGDLTSVAIFKRIVRDTIGQY--AQNLSFVTADDLFYQRIFYH----HLHL 392 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~--~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~--~~~i~f~~~d~~~~~~~~l~----~lgi 392 (493)
|.++.++.+|+.++-+. ...+++.|...++... .+|++++.++++++ ..++.|+|+|...|+.+ .. .||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG-~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPll-v~yWektF~I 78 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDG-YEFLEILKEVARDNTDNPDLSIIWIDPDDFPLL-VPYWEKTFGI 78 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccH-HHHHHHHHHHHHhcCcCCCceEEEECCccCchh-hHHHHhhcCc
Confidence 56788999999998764 3457778887776443 56777776666333 35799999999999877 64 4788
Q ss_pred CCCCCCeEEEEeCC---cccc-CCCCCCCCCChhHHHHHHHHHH
Q psy9502 393 SSDDLPVLRLDDYK---HIYR-LPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 393 ~~~~~P~ivi~~~~---~~y~-~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
+-. -|+|.+.+.. +.+. ..+ -.+..+.+.|..||.|++
T Consensus 79 Dl~-~PqIGVV~vtdadSvW~~m~~-~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 79 DLF-RPQIGVVNVTDADSVWMEMDD-DEDLPTAEELEDWIEDVL 120 (120)
T ss_pred ccC-CCceeeEecccccceeEeccc-ccccCcHHHHHHHHHhhC
Confidence 865 6999987753 3433 333 346788999999999974
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.78 E-value=0.0001 Score=78.57 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=75.8
Q ss_pred EcccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE
Q psy9502 121 YLRQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK 199 (493)
Q Consensus 121 ~l~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~ 199 (493)
.|+++..+.+-.=+ ..-+-.|+++.|++|......+.++|.. ++.|..-.||...++++.++|+|.+.|+++
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-------~~~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-------NPNITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-------CCCceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 35555545443323 4557789999999998888888777764 348999999999999999999999999996
Q ss_pred EEeCCeeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 200 IIRNGLATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 200 ~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
+ +|.. .+.|..+.+++++.+.+...
T Consensus 175 i--~~~~---~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 175 L--NGEE---FGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred E--CCcE---EEecCCCHHHHHHHHhcccc
Confidence 4 5553 48899999999999987554
No 162
>PRK09381 trxA thioredoxin; Provisional
Probab=97.77 E-value=0.00034 Score=57.77 Aligned_cols=103 Identities=10% Similarity=0.067 Sum_probs=76.6
Q ss_pred ceeecChhcHHH-HHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeE
Q psy9502 322 LVREITYENAEE-ISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVL 400 (493)
Q Consensus 322 ~v~elt~~n~~~-l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~i 400 (493)
.|.+++.+++.+ +...+.++++.|+.+++ ..++.+...+++.++++.+++.|+.+|+...+.. .+.+|+. .+|.+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C-~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~Pt~ 79 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWC-GPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIR--GIPTL 79 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCC-HHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCC--cCCEE
Confidence 367788888875 45667899999999987 4566666555544467778899999999988888 8889884 79999
Q ss_pred EEEeCCc-cccCCCCCCCCCChhHHHHHHHHHH
Q psy9502 401 RLDDYKH-IYRLPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 401 vi~~~~~-~y~~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
++...++ .+.+. +..+.+.|.+||+..+
T Consensus 80 ~~~~~G~~~~~~~----G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKV----GALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEec----CCCCHHHHHHHHHHhc
Confidence 8887654 34433 3345788999988653
No 163
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.75 E-value=0.00018 Score=64.94 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=62.7
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----------------------------Cc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE----------------------------EP 184 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~----------------------------~~ 184 (493)
+++++|.|| +.||+.|....+.+.++++++++. ++.+..|.++. ..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-----~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~ 103 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-----NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKK 103 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCch
Confidence 589999999 899999999999999999999764 45556565543 12
Q ss_pred cccccCccc------cCceEEEEeCCeeeeeeccc----CCCHHHHHHHHHHH
Q psy9502 185 RIRDFFHIT------KYPTLKIIRNGLATRSEYRS----QRTTEALLNFIAEE 227 (493)
Q Consensus 185 ~l~~~~~i~------~~Ptl~~f~~g~~~~~~y~G----~~~~~~l~~fi~~~ 227 (493)
.+.+.|++. ..|+.+++.+...+...+.+ .++.+++++.|+..
T Consensus 104 ~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 104 KISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred hHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 344566765 46788888644333324422 35778888888764
No 164
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.74 E-value=3.6e-05 Score=60.21 Aligned_cols=59 Identities=20% Similarity=0.367 Sum_probs=44.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-----cccccCccccCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-----RIRDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Ptl~~f~~g~~ 206 (493)
++.|+++||++|+++.+.+.++. + .+.+.+..||-+.+. .+.+.+++.++|++ |-+|..
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i------~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~ 64 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--V------KPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKF 64 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--C------CCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 47899999999999999999875 2 124667777766543 26666789999997 456654
No 165
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.74 E-value=0.0003 Score=58.55 Aligned_cols=99 Identities=10% Similarity=0.070 Sum_probs=73.5
Q ss_pred CceeecChhcHHHH---HhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhh-hccCCCCCC
Q psy9502 321 PLVREITYENAEEI---SEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFY-HHLHLSSDD 396 (493)
Q Consensus 321 P~v~elt~~n~~~l---~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l-~~lgi~~~~ 396 (493)
+.|.+++.+|+.++ ..++.++++.|+.+++ ..++.+...+.+.++++++.+.|+.+|++..... + +.+++. .
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC-~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l-~~~~~~I~--~ 84 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWD-AQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK-CRKQKHFF--Y 84 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCC-HHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH-HHHhcCCc--c
Confidence 45789999999987 4678899999999998 4566666656554467788899999999988877 7 578884 7
Q ss_pred CCeEEEEeCCc-cccCCCCCCCCCChhHHHHH
Q psy9502 397 LPVLRLDDYKH-IYRLPSLITLAENPSTLVSI 427 (493)
Q Consensus 397 ~P~ivi~~~~~-~y~~~~~~~~~~~~~~l~~F 427 (493)
+|.|.+...+. ...| .+..+.+.|..|
T Consensus 85 ~PTl~lf~~g~~~~~y----~G~~~~~~i~~~ 112 (113)
T cd03006 85 FPVIHLYYRSRGPIEY----KGPMRAPYMEKF 112 (113)
T ss_pred cCEEEEEECCccceEE----eCCCCHHHHHhh
Confidence 99988876543 2333 334456777666
No 166
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.73 E-value=0.00016 Score=68.70 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=69.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-----------ccccccCccccCceEEEEe
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-----------PRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Ptl~~f~ 202 (493)
++.-||.||..-|++|+++.|+...+++++ ++.+..|+.+.. ..++++++|..+|++++..
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y--------gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~ 221 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY--------GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVN 221 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh--------CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEE
Confidence 468999999999999999999999999998 677777776654 3477899999999999997
Q ss_pred CCeeee-eecccCCCHHHHHHHHHHHc
Q psy9502 203 NGLATR-SEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 203 ~g~~~~-~~y~G~~~~~~l~~fi~~~~ 228 (493)
.+.... ..=.|..+.++|.+-+...+
T Consensus 222 ~~t~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 222 PKSQKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CCCCcEEEEeeccCCHHHHHHHHHHHH
Confidence 653322 12369999999988776544
No 167
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.73 E-value=0.00032 Score=57.12 Aligned_cols=98 Identities=13% Similarity=0.115 Sum_probs=71.5
Q ss_pred eeecChhcHHHHHhc-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcC--CcEEEEEEeCcc-cchhhhhccCCCCCCCC
Q psy9502 323 VREITYENAEEISEE-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYA--QNLSFVTADDLF-YQRIFYHHLHLSSDDLP 398 (493)
Q Consensus 323 v~elt~~n~~~l~~~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~--~~i~f~~~d~~~-~~~~~l~~lgi~~~~~P 398 (493)
+.+++.+++..+... ++++++.|+.+++ ..++.+...+...++.++ +++.|+.+|+.. .+.. ++.+|+. ..|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C-~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~i~--~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWC-GHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL-AKKYGVS--GFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCC-HHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh-HHhCCCC--CcC
Confidence 467888999888764 5589999999888 445555555544444444 569999999998 8888 9999985 799
Q ss_pred eEEEEeCC--ccccCCCCCCCCCChhHHHHHH
Q psy9502 399 VLRLDDYK--HIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 399 ~ivi~~~~--~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
.+++...+ ..+.|. +..+.+.|.+||
T Consensus 78 ~~~~~~~~~~~~~~~~----g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVKYE----GGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccccC----CccCHHHHHhhC
Confidence 99887654 344443 335678888875
No 168
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.72 E-value=0.00011 Score=57.80 Aligned_cols=95 Identities=21% Similarity=0.348 Sum_probs=76.6
Q ss_pred cccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccc----cCc-
Q psy9502 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHIT----KYP- 196 (493)
Q Consensus 124 ~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P- 196 (493)
-++|.+++.....|||.|..+-- .-......|.++|+.+ .|.-.++-|||.. ...||+++.|. --|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~v------kG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~ 81 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAV------KGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPV 81 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHh------cCceeEEEEecCChHHHHHHHHHccCCCCCCCcc
Confidence 36889999888999999877643 3334455899999999 5667889999987 57899999998 444
Q ss_pred eEEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
++.-|++|.... +|+-..+..+|+.|++.
T Consensus 82 ~LkHYKdG~fHk-dYdR~~t~kSmv~FlrD 110 (112)
T cd03067 82 ELKHYKDGDFHT-EYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hhhcccCCCccc-cccchhhHHHHHHHhhC
Confidence 466789998766 89999999999999975
No 169
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.72 E-value=0.00045 Score=59.04 Aligned_cols=110 Identities=12% Similarity=0.151 Sum_probs=83.1
Q ss_pred CcEEcccccHHH-HHcCCCeEEEEEEcC--CChh--HhhhhHHHHHHHHHHhhcCCCCCC-eEEEEEeCCCCccccccCc
Q psy9502 118 RVKYLRQNNFTE-VLSQYKLAVVNFYAD--WCRF--CHLLKPVLEETAAIVDTQYPQDNQ-VVVAQINCDEEPRIRDFFH 191 (493)
Q Consensus 118 ~v~~l~~~nf~~-~l~~~~~~lV~Fya~--wC~~--C~~l~p~~~~~a~~~~~~~~~~~~-v~~~~vd~~~~~~l~~~~~ 191 (493)
.|++|++.++.+ .=.+++..+|.|... -|.. -..+...+.++|+.+ .++ +.|+-+|.+++..+.+.|+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~------kgk~i~Fv~vd~~~~~~~~~~fg 76 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKF------KKKPWGWLWTEAGAQLDLEEALN 76 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHh------cCCcEEEEEEeCcccHHHHHHcC
Confidence 588899877644 445566777777543 1221 256788899999999 456 9999999999988999999
Q ss_pred cc--cCceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcc
Q psy9502 192 IT--KYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233 (493)
Q Consensus 192 i~--~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~ 233 (493)
+. ++|+++++...+.....++|..+.++|.+|+.+.+...+.
T Consensus 77 l~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~ 120 (130)
T cd02983 77 IGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGP 120 (130)
T ss_pred CCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcc
Confidence 95 4999999977543211277999999999999999876653
No 170
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.72 E-value=0.0003 Score=57.28 Aligned_cols=98 Identities=7% Similarity=0.087 Sum_probs=71.7
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcC--CcEEEEEEeCcc--cchhhhhccCCCCCCCC
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYA--QNLSFVTADDLF--YQRIFYHHLHLSSDDLP 398 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~--~~i~f~~~d~~~--~~~~~l~~lgi~~~~~P 398 (493)
|.+++..+++.+...+.+++|.|+.+++ ..++.+...+.+.++.+. +.+.|+.+|+.. .+.. ++.+|+. .+|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC-~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~-~~~~~i~--~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWC-GHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDAL-KEEYNVK--GFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCC-HHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHH-HHhCCCc--ccc
Confidence 5678899999999888999999999988 455655554443333333 568999999997 7777 8889984 799
Q ss_pred eEEEEeCCc-cccCCCCCCCCCChhHHHHHH
Q psy9502 399 VLRLDDYKH-IYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 399 ~ivi~~~~~-~y~~~~~~~~~~~~~~l~~Fi 428 (493)
.+++...++ .+.+. +..+++.+.+||
T Consensus 78 t~~~~~~g~~~~~~~----g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKYE----GERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEeC----CCCCHHHHHhhC
Confidence 988877654 44443 334567777774
No 171
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.72 E-value=0.0002 Score=62.58 Aligned_cols=46 Identities=17% Similarity=0.225 Sum_probs=36.2
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
+..+++.|+++||+.|+...|.+.++.+++++. ++.+..|+.+...
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~-----~v~vv~V~~~~~~ 69 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL-----GVELVAVGPESPE 69 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc-----CeEEEEEeCCCHH
Confidence 345555556999999999999999999999644 6888888876543
No 172
>KOG1672|consensus
Probab=97.71 E-value=0.00013 Score=64.58 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=78.0
Q ss_pred CCCcEEcc-cccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCcccc
Q psy9502 116 TTRVKYLR-QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194 (493)
Q Consensus 116 ~~~v~~l~-~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 194 (493)
-+...++. ...|-+....++-|++.||-|.-..|+-+...++.+|+.. -...|.+||+...|=++.+++|.-
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h-------~eTrFikvnae~~PFlv~kL~IkV 137 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRH-------VETRFIKVNAEKAPFLVTKLNIKV 137 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhc-------ccceEEEEecccCceeeeeeeeeE
Confidence 35566666 6788888878889999999999999999999999999886 378999999999999999999999
Q ss_pred CceEEEEeCCeeeeeeccc
Q psy9502 195 YPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 195 ~Ptl~~f~~g~~~~~~y~G 213 (493)
.|++.+|.+|.... .+.|
T Consensus 138 LP~v~l~k~g~~~D-~iVG 155 (211)
T KOG1672|consen 138 LPTVALFKNGKTVD-YVVG 155 (211)
T ss_pred eeeEEEEEcCEEEE-EEee
Confidence 99999999998765 3344
No 173
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.70 E-value=0.00022 Score=59.64 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=66.4
Q ss_pred cCCCeEEEEEEcC----CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC--ccccccCccccCceEEEEe--C
Q psy9502 132 SQYKLAVVNFYAD----WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE--PRIRDFFHITKYPTLKIIR--N 203 (493)
Q Consensus 132 ~~~~~~lV~Fya~----wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Ptl~~f~--~ 203 (493)
++.+.++|++|++ ||.+|+..... .++.+.+. .++.+...|.+.. ..++..+++++||++.++. +
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln------~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN------TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH------cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 5568999999999 99999655421 44555552 2577777888654 4688999999999999982 2
Q ss_pred Ce-eeeeecccCCCHHHHHHHHHHHc
Q psy9502 204 GL-ATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 204 g~-~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
++ ....+..|..++++|+..++...
T Consensus 88 ~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 88 NRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 22 22236899999999999888754
No 174
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00039 Score=66.16 Aligned_cols=108 Identities=10% Similarity=0.101 Sum_probs=85.8
Q ss_pred CCceeecChhcHHHHHh--c-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCC
Q psy9502 320 VPLVREITYENAEEISE--E-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDD 396 (493)
Q Consensus 320 ~P~v~elt~~n~~~l~~--~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~ 396 (493)
.|.+.++|..||+.... + ..|+++.|..+++ ..++.+...+++...+|+|++.++.+|++..+.. ...||+. .
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~-~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v-Aaqfgiq--s 97 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWC-GPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV-AAQFGVQ--S 97 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCC-chHHHHHHHHHHHHHHhCCceEEEEecCCcchhH-HHHhCcC--c
Confidence 35599999999988752 2 4699999999998 6788888888776688999999999999999999 9999995 8
Q ss_pred CCeEEEEeCCccccCCCCCCCCCChhHHHHHHHHHHcC
Q psy9502 397 LPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSG 434 (493)
Q Consensus 397 ~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~sG 434 (493)
+|.++.+-.+.- ... |.+...++.|++|++.+..-
T Consensus 98 IPtV~af~dGqp--Vdg-F~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 98 IPTVYAFKDGQP--VDG-FQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CCeEEEeeCCcC--ccc-cCCCCcHHHHHHHHHHhcCh
Confidence 998766544321 112 44555667999999998765
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.67 E-value=0.00017 Score=77.45 Aligned_cols=92 Identities=17% Similarity=0.260 Sum_probs=72.2
Q ss_pred EcccccHHHHHcCCCeEEE-EEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE
Q psy9502 121 YLRQNNFTEVLSQYKLAVV-NFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK 199 (493)
Q Consensus 121 ~l~~~nf~~~l~~~~~~lV-~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~ 199 (493)
.|+.+..+.+-.=++++-| .|.+++|++|......+.++|... ++|..-.||.+..++++++|+|.+.|+++
T Consensus 462 ~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-------~~i~~~~i~~~~~~~~~~~~~v~~vP~~~ 534 (555)
T TIGR03143 462 PLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-------PNVEAEMIDVSHFPDLKDEYGIMSVPAIV 534 (555)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-------CCceEEEEECcccHHHHHhCCceecCEEE
Confidence 4555555555433455544 578999999998888888887763 47999999999999999999999999986
Q ss_pred EEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 200 IIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 200 ~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+ +|+. .+.|..+.+++++|+
T Consensus 535 i--~~~~---~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 535 V--DDQQ---VYFGKKTIEEMLELI 554 (555)
T ss_pred E--CCEE---EEeeCCCHHHHHHhh
Confidence 5 6664 377988999999886
No 176
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.67 E-value=0.00026 Score=64.72 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=62.5
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-------------------------Ccccc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-------------------------EPRIR 187 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~ 187 (493)
+++++|.|| +.||+.|..-.|.+.++..++++. ++.+..|.++. ...++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-----gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a 105 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-----GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT 105 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-----CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH
Confidence 678999999 999999999999999999999754 45555554432 23566
Q ss_pred ccCccc------cCceEEEEe-CCeeeeeec-cc--CCCHHHHHHHHHH
Q psy9502 188 DFFHIT------KYPTLKIIR-NGLATRSEY-RS--QRTTEALLNFIAE 226 (493)
Q Consensus 188 ~~~~i~------~~Ptl~~f~-~g~~~~~~y-~G--~~~~~~l~~fi~~ 226 (493)
+.|++. ..|+.+++. +|......+ .+ .++.+++++.|+.
T Consensus 106 ~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 106 RNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred HHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 677875 358888885 566544222 11 3688888888754
No 177
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.67 E-value=0.00021 Score=63.06 Aligned_cols=87 Identities=17% Similarity=0.277 Sum_probs=58.5
Q ss_pred CCCeEEEEEEcC-CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------CccccccC
Q psy9502 133 QYKLAVVNFYAD-WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------EPRIRDFF 190 (493)
Q Consensus 133 ~~~~~lV~Fya~-wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~ 190 (493)
.+++++|.||+. ||+.|....+.+.++++.+++. ++.+..|+.+. ...+.+.|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-----~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 103 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-----GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQF 103 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-----CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHh
Confidence 457899999986 6889999999999999998754 56666665542 23455667
Q ss_pred ccccC------------ceEEEEe-CCeeeeeecccCC---CHHHHHHHHH
Q psy9502 191 HITKY------------PTLKIIR-NGLATRSEYRSQR---TTEALLNFIA 225 (493)
Q Consensus 191 ~i~~~------------Ptl~~f~-~g~~~~~~y~G~~---~~~~l~~fi~ 225 (493)
++... |+.+++. +|.... .|.|.. ..+.++++++
T Consensus 104 gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~-~~~g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 104 GVWGEKKFMGKTYDGIHRISFLIDADGKIEH-VFDKFKTSNHHDVVLDYLK 153 (154)
T ss_pred CCCcccccccccccCcceEEEEECCCCEEEE-EEcCCCcchhHHHHHHHHh
Confidence 76543 5666774 565544 577643 3445666554
No 178
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.66 E-value=0.00037 Score=56.57 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=70.5
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC---cEEEEEEeCcccchhhhhccCCCCCCCCe
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ---NLSFVTADDLFYQRIFYHHLHLSSDDLPV 399 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~---~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ 399 (493)
+.++|.+++......+ ++++.|+.+++ ..++.+...+.+.++++++ ++.|+.+|+...... ++.+++. .+|.
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC-~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWC-GHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL-CSEFQVR--GYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCC-HHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh-HhhcCCC--cCCE
Confidence 5688999999998765 69999999988 4566665555444445554 699999999988888 8889884 7999
Q ss_pred EEEEeCCc-cccCCCCCCCCCChhHHHHHH
Q psy9502 400 LRLDDYKH-IYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 400 ivi~~~~~-~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+++...+. ...+ .+..+.+.|.+||
T Consensus 77 ~~~~~~g~~~~~~----~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKY----KGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEe----eCCCCHHHHHhhC
Confidence 88776553 3333 3344567787775
No 179
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.65 E-value=0.00052 Score=55.81 Aligned_cols=97 Identities=10% Similarity=0.101 Sum_probs=69.5
Q ss_pred eeecChhcHHHHHh-cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC--cEEEEEEeCcccchhhhhccCCCCCCCCe
Q psy9502 323 VREITYENAEEISE-EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ--NLSFVTADDLFYQRIFYHHLHLSSDDLPV 399 (493)
Q Consensus 323 v~elt~~n~~~l~~-~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~--~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ 399 (493)
|.++|.++++.... .+++++|.|+.+++ ..++.+...+.+.++.+++ ++.|+.+|+... .. ...+++ ..+|.
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C-~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~-~~~~~~--~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWC-GHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DV-PSEFVV--DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCC-HHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hh-hhhccC--CCCCE
Confidence 67899999988764 45899999999988 4566666666554445454 699999999875 34 566776 58999
Q ss_pred EEEEeCCc---cccCCCCCCCCCChhHHHHHH
Q psy9502 400 LRLDDYKH---IYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 400 ivi~~~~~---~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+++...+. .+.|. +..+...|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~----g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYE----GDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEcc----CCcCHHHHHhhC
Confidence 98877653 34443 334567777775
No 180
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.62 E-value=0.00031 Score=58.37 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=69.8
Q ss_pred cChhcHHH-HHh--cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCcccchhhhhccCCCCCCCCeEE
Q psy9502 326 ITYENAEE-ISE--EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDLFYQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 326 lt~~n~~~-l~~--~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv 401 (493)
+|.+++.+ ++. .++|++|.|+.+++ ..++.+...+.+.++++++ ++.++.+|+...+.. ++.+|+. ..|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~vlV~F~a~wC-~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l-~~~~~V~--~~Pt~~ 84 (111)
T cd02963 9 LTFSQYENEIVPKSFKKPYLIKITSDWC-FSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL-ARKLGAH--SVPAIV 84 (111)
T ss_pred eeHHHHHHhhccccCCCeEEEEEECCcc-HhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH-HHHcCCc--cCCEEE
Confidence 45666654 332 57899999999998 4566665555544455554 599999999988888 8999994 899988
Q ss_pred EEeCCccccCCCCCCCCCChhHHHHHHHH
Q psy9502 402 LDDYKHIYRLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 402 i~~~~~~y~~~~~~~~~~~~~~l~~Fi~d 430 (493)
+...++.... ..+..+.+.|.+||+.
T Consensus 85 i~~~g~~~~~---~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 85 GIINGQVTFY---HDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEECCEEEEE---ecCCCCHHHHHHHHhc
Confidence 8776644332 2344567889999875
No 181
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.62 E-value=0.00062 Score=56.27 Aligned_cols=99 Identities=12% Similarity=0.138 Sum_probs=70.7
Q ss_pred eeecChhcHHHHHh---cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCcc-cchhhhh-ccCCCCCC
Q psy9502 323 VREITYENAEEISE---EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDLF-YQRIFYH-HLHLSSDD 396 (493)
Q Consensus 323 v~elt~~n~~~l~~---~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~-~~~~~l~-~lgi~~~~ 396 (493)
|.++|.++++.+.. .++++++.|+.+++ ..++.+...+.+.+..+++ .+.++.+|++. .... +. .+|+ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC-~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~-~~~~~~v--~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYAPWC-PFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF-AKEELQL--KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEECCCC-HHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh-HHhhcCC--Cc
Confidence 67899999999974 47899999999998 4566666655544456666 49999999986 3444 54 5887 47
Q ss_pred CCeEEEEeCC--ccccCCCCCCCCCChhHHHHHH
Q psy9502 397 LPVLRLDDYK--HIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 397 ~P~ivi~~~~--~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
.|.+.+.+.+ ..+.|+. +..+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y~g---~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKYPS---EQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceeccC---CCCCHHHHHhhC
Confidence 9999887664 3455543 123567788775
No 182
>KOG3425|consensus
Probab=97.57 E-value=0.00044 Score=56.35 Aligned_cols=73 Identities=26% Similarity=0.385 Sum_probs=56.1
Q ss_pred ccHHHHH---cCCCeEEEEEEcC--------CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------ccc
Q psy9502 125 NNFTEVL---SQYKLAVVNFYAD--------WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------PRI 186 (493)
Q Consensus 125 ~nf~~~l---~~~~~~lV~Fya~--------wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------~~l 186 (493)
+.|++.+ .+++.++|+|+++ ||+.|.+..|.+.++-+.. ..++.|.+|+..+- ..+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a------p~~~~~v~v~VG~rp~Wk~p~n~F 86 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA------PEDVHFVHVYVGNRPYWKDPANPF 86 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC------CCceEEEEEEecCCCcccCCCCcc
Confidence 4566655 3456699999976 9999999999999987744 46899999998753 345
Q ss_pred cccCcc-ccCceEEEEeC
Q psy9502 187 RDFFHI-TKYPTLKIIRN 203 (493)
Q Consensus 187 ~~~~~i-~~~Ptl~~f~~ 203 (493)
....++ ++.||+.=+.+
T Consensus 87 R~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 87 RKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccCCCceeecceeeEEcC
Confidence 556666 89999987764
No 183
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.56 E-value=0.001 Score=54.04 Aligned_cols=97 Identities=13% Similarity=0.065 Sum_probs=71.0
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCcccchhhhhccCCCCCCCCeEE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDLFYQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv 401 (493)
|.+++.+++.++..+ +++|.|+.+++ ..++.+...+.+.+..+++ ++.|+.+|+...+.. ++.+++ ..+|.++
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~a~wC-~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~-~~~~~i--~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFYAPWC-PACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL-SGRFFV--TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEECCCC-HHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH-HHHcCC--cccCEEE
Confidence 678999999998753 37899999988 4556555555443334343 599999999988888 888988 4899998
Q ss_pred EEeCCccccCCCCCCCCCChhHHHHHHH
Q psy9502 402 LDDYKHIYRLPSLITLAENPSTLVSIVE 429 (493)
Q Consensus 402 i~~~~~~y~~~~~~~~~~~~~~l~~Fi~ 429 (493)
+...+....| .+..+.+.|.+||+
T Consensus 77 ~~~~g~~~~~----~G~~~~~~l~~~i~ 100 (101)
T cd02994 77 HAKDGVFRRY----QGPRDKEDLISFIE 100 (101)
T ss_pred EeCCCCEEEe----cCCCCHHHHHHHHh
Confidence 8765544343 34556788999986
No 184
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.54 E-value=0.00015 Score=63.61 Aligned_cols=79 Identities=15% Similarity=0.444 Sum_probs=55.0
Q ss_pred cccccHHHHHcCCCeEEEEEEcCCChhHhhhhHH-H--HHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC--------
Q psy9502 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPV-L--EETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF-------- 190 (493)
Q Consensus 122 l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~-------- 190 (493)
.+.+.|...-.+++++||.++++||+.|+.+... | .++|+.+.+ ..+-.+||.++.+++...|
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~~~~~~~~ 98 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYMNAVQAMS 98 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHHHHHHHhc
Confidence 3456788888889999999999999999999874 4 568888854 4677899999999998888
Q ss_pred ccccCceEEEEe-CCee
Q psy9502 191 HITKYPTLKIIR-NGLA 206 (493)
Q Consensus 191 ~i~~~Ptl~~f~-~g~~ 206 (493)
+..|+|+.++.. +|+.
T Consensus 99 ~~gGwPl~vfltPdg~p 115 (163)
T PF03190_consen 99 GSGGWPLTVFLTPDGKP 115 (163)
T ss_dssp S---SSEEEEE-TTS-E
T ss_pred CCCCCCceEEECCCCCe
Confidence 778999887775 4544
No 185
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.54 E-value=0.00049 Score=62.41 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=74.1
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--------C---ccccc-cCccccCceEEE
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--------E---PRIRD-FFHITKYPTLKI 200 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~i~~~Ptl~~ 200 (493)
.++++||.|||+||+.|++ .|.++++.+++++. ++.+..+.|.+ . ...|+ +++++ ||-
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-----gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv--- 93 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-----GFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPM--- 93 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-----CeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-cee---
Confidence 3689999999999999975 88999999999654 68899999953 1 13444 56653 553
Q ss_pred EeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCC---------------Cchh----hhccC---CceEEEEecCCCC
Q psy9502 201 IRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLE---------------EAPK----FNVHD---KTLMLGRFNSKNS 258 (493)
Q Consensus 201 f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~---------------s~~~----l~~~~---~~~vv~ff~~~~~ 258 (493)
+.+ ..-+|. ....|.+|+++....+...-. -..+ +.++. +..+|..|.+...
T Consensus 94 ~~k-----~dvnG~-~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~ 167 (183)
T PRK10606 94 FSK-----IEVNGE-GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMT 167 (183)
T ss_pred EEE-----EccCCC-CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCC
Confidence 321 123343 344788888876642110000 0011 22332 6789999998777
Q ss_pred chhHHHHHHH
Q psy9502 259 PEYELFSRVC 268 (493)
Q Consensus 259 ~~~~~f~~~A 268 (493)
+.-+.+.+..
T Consensus 168 p~~~~i~~~i 177 (183)
T PRK10606 168 PEDPIVMESI 177 (183)
T ss_pred CCHHHHHHHH
Confidence 6644444443
No 186
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.54 E-value=0.00037 Score=54.80 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=56.1
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc----cccccCc--cccCceEEEEeCCeeeeee
Q psy9502 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----RIRDFFH--ITKYPTLKIIRNGLATRSE 210 (493)
Q Consensus 137 ~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Ptl~~f~~g~~~~~~ 210 (493)
-++.|+.+||++|++....+++++..+ .++.+..+|.+.+. ++.+..+ +..+|+|+ .+|+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i--- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-------DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI--- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-------cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE---
Confidence 367899999999999999999988653 26888888888653 3444333 47899975 577643
Q ss_pred cccCCCHHHHHHHHHHHcC
Q psy9502 211 YRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 211 y~G~~~~~~l~~fi~~~~~ 229 (493)
| ..++|.++++.+++
T Consensus 70 --g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 --G--GCTDFEAYVKENLG 84 (85)
T ss_pred --c--CHHHHHHHHHHhcc
Confidence 2 33678888877653
No 187
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.54 E-value=0.0004 Score=57.85 Aligned_cols=75 Identities=19% Similarity=0.360 Sum_probs=48.4
Q ss_pred ccHHHHH----cCCCeEEEEEEcC-------CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------ccc
Q psy9502 125 NNFTEVL----SQYKLAVVNFYAD-------WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------PRI 186 (493)
Q Consensus 125 ~nf~~~l----~~~~~~lV~Fya~-------wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------~~l 186 (493)
++|.+.+ .+++.++|.|+++ ||+.|....|..+++-... ..+..+..|..... ...
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~------~~~~~lv~v~VG~r~~Wkdp~n~f 79 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA------PENARLVYVEVGDRPEWKDPNNPF 79 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-------STTEEEEEEE---HHHHC-TTSHH
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC------CCCceEEEEEcCCHHHhCCCCCCc
Confidence 3455544 3457999999965 9999999999999987764 34677777766431 123
Q ss_pred cc--cCccccCceEEEEeCCe
Q psy9502 187 RD--FFHITKYPTLKIIRNGL 205 (493)
Q Consensus 187 ~~--~~~i~~~Ptl~~f~~g~ 205 (493)
.. +++++++|||+-+..+.
T Consensus 80 R~~p~~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 80 RTDPDLKLKGIPTLIRWETGE 100 (119)
T ss_dssp HH--CC---SSSEEEECTSS-
T ss_pred eEcceeeeeecceEEEECCCC
Confidence 33 58999999999997774
No 188
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=97.52 E-value=1.8e-05 Score=64.90 Aligned_cols=31 Identities=10% Similarity=-0.181 Sum_probs=26.9
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
++++++|+||||| |++|+.++|.++++++.+
T Consensus 14 ~~k~vvv~F~a~w-----C~~C~~~~p~l~~la~~~ 44 (103)
T cd02985 14 KGRLVVLEFALKH-----SGPSVKIYPTMVKLSRTC 44 (103)
T ss_pred CCCEEEEEEECCC-----CHhHHHHhHHHHHHHHHC
Confidence 4889999999999 999999999998765433
No 189
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.52 E-value=0.0011 Score=53.34 Aligned_cols=97 Identities=16% Similarity=0.158 Sum_probs=68.0
Q ss_pred ChhcHHHHHhc-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC
Q psy9502 327 TYENAEEISEE-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY 405 (493)
Q Consensus 327 t~~n~~~l~~~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~ 405 (493)
+.+++...... +++++|.|+.+++ ..++.+...+.+...++.+++.|+.+|+...... ++.+|+. ..|.+++...
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C-~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWC-GPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI-AAKYGIR--SIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCC-HHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH-HHHcCCC--cCCEEEEEeC
Confidence 45666665544 5699999999887 4455555555433356567899999999988877 8899985 7999888765
Q ss_pred Cc-cccCCCCCCCCCChhHHHHHHHHH
Q psy9502 406 KH-IYRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 406 ~~-~y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
++ ...+. +..+.+.|.+||+..
T Consensus 78 g~~~~~~~----g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRSV----GALPKAALKQLINKN 100 (101)
T ss_pred CcEeeeec----CCCCHHHHHHHHHhh
Confidence 53 33332 234568899998763
No 190
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.51 E-value=0.00049 Score=61.70 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCCeEEEEEEcCC-ChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC-----------------------Cccccc
Q psy9502 133 QYKLAVVNFYADW-CRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-----------------------EPRIRD 188 (493)
Q Consensus 133 ~~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~ 188 (493)
.+++++|.||+.| |+.|..-.|.+.++++++. ++.+..|+++. ...+++
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-------~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~ 115 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-------NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGK 115 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-------CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHH
Confidence 3679999999999 9999999999999888761 45566665543 124566
Q ss_pred cCccccCc---------eEEEEe-CCeeeeeec-----ccCCCHHHHHHHHH
Q psy9502 189 FFHITKYP---------TLKIIR-NGLATRSEY-----RSQRTTEALLNFIA 225 (493)
Q Consensus 189 ~~~i~~~P---------tl~~f~-~g~~~~~~y-----~G~~~~~~l~~fi~ 225 (493)
.|++...| +.+++. +|.... .+ ....+.++++++++
T Consensus 116 ~~gv~~~~~~~~g~~~r~tfvId~~G~I~~-~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 116 AYGVAIAEGPLKGLLARAVFVLDENNKVVY-SELVPEITNEPDYDAALAALK 166 (167)
T ss_pred HhCCeecccccCCceeeEEEEECCCCeEEE-EEECCCcCCCCCHHHHHHHhh
Confidence 67776666 666664 455433 22 12346677777664
No 191
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.51 E-value=0.0005 Score=64.93 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=67.0
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--C---------ccccccCccccCceEEEEe
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--E---------PRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~---------~~l~~~~~i~~~Ptl~~f~ 202 (493)
++.-||.||..-|++|+++.|+...+++++ ++.+..|+.+. . ....++++|..+|++++..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y--------g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~ 214 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY--------GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVD 214 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh--------CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEE
Confidence 568999999999999999999999999998 66666555543 2 2355689999999999997
Q ss_pred CCee--eeeecccCCCHHHHHHHHHHHc
Q psy9502 203 NGLA--TRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 203 ~g~~--~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
.+.. .+ .=.|..+.++|.+-+....
T Consensus 215 ~~t~~~~p-v~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 215 PKSGSVRP-LSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred CCCCcEEE-EeeccCCHHHHHHHHHHHH
Confidence 6543 33 2468999999988776543
No 192
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.49 E-value=0.0012 Score=52.96 Aligned_cols=92 Identities=11% Similarity=0.130 Sum_probs=66.2
Q ss_pred cHHHHH-hc-CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCc
Q psy9502 330 NAEEIS-EE-GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKH 407 (493)
Q Consensus 330 n~~~l~-~~-~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~ 407 (493)
++++.. +. +++++|.|+.+++ ..++.+...+.+.+..+.+.+.|+.+|++..+.. .+.+|+. .+|.+++...++
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC-~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l-~~~~~i~--~~Pt~~~~~~g~ 77 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRS-PPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQI-AQQFGVQ--ALPTVYLFAAGQ 77 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCC-hHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHH-HHHcCCC--CCCEEEEEeCCE
Confidence 344444 34 6799999999998 4566666666544466677899999999998888 8999985 799998887553
Q ss_pred cc-cCCCCCCCCCChhHHHHHHH
Q psy9502 408 IY-RLPSLITLAENPSTLVSIVE 429 (493)
Q Consensus 408 ~y-~~~~~~~~~~~~~~l~~Fi~ 429 (493)
.. .+ .+..+.+.|.+||+
T Consensus 78 ~~~~~----~g~~~~~~l~~~l~ 96 (96)
T cd02956 78 PVDGF----QGAQPEEQLRQMLD 96 (96)
T ss_pred Eeeee----cCCCCHHHHHHHhC
Confidence 32 22 33456788888873
No 193
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.48 E-value=8.5e-06 Score=68.14 Aligned_cols=41 Identities=7% Similarity=-0.080 Sum_probs=32.0
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
+++......+.++++|.||||| |++|+.++|.|+++++.+.
T Consensus 9 ~~f~~~i~~~~~~vvV~f~a~w-----C~~C~~~~~~~~~la~~~~ 49 (114)
T cd02992 9 ASFNSALLGSPSAWLVEFYASW-----CGHCRAFAPTWKKLARDLR 49 (114)
T ss_pred HhHHHHHhcCCCeEEEEEECCC-----CHHHHHHhHHHHHHHHHHH
Confidence 3444444456679999999999 9999999999998865543
No 194
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.47 E-value=0.0023 Score=55.69 Aligned_cols=98 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred cHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCc--ccchhhhhccCCCCCCCCeEEEEeC-C
Q psy9502 330 NAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDL--FYQRIFYHHLHLSSDDLPVLRLDDY-K 406 (493)
Q Consensus 330 n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~--~~~~~~l~~lgi~~~~~P~ivi~~~-~ 406 (493)
.++.....+++++|.|+.++| ..++.+...+.+..++|.+++.|+.+|.+ .+... +..+|+. .+|.+++.+. +
T Consensus 12 ~~~~a~~~gk~vvV~F~A~WC-~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~-~~~~~V~--~iPt~v~~~~~G 87 (142)
T cd02950 12 PPEVALSNGKPTLVEFYADWC-TVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPE-IDRYRVD--GIPHFVFLDREG 87 (142)
T ss_pred CHHHHHhCCCEEEEEEECCcC-HHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHH-HHHcCCC--CCCEEEEECCCC
Confidence 345556778999999999998 55666666665544666777777777655 34566 7889885 7999998864 3
Q ss_pred c-cccCCCCCCCCCChhHHHHHHHHHHcCC
Q psy9502 407 H-IYRLPSLITLAENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 407 ~-~y~~~~~~~~~~~~~~l~~Fi~d~~sGk 435 (493)
. ...+ .+....+.|.++|+.+..|.
T Consensus 88 ~~v~~~----~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEGQS----IGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEEEE----eCCCCHHHHHHHHHHHHcCC
Confidence 2 2332 34456788999999999876
No 195
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.42 E-value=0.00037 Score=52.47 Aligned_cols=67 Identities=18% Similarity=0.340 Sum_probs=45.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC----ccccCceEEEEeCCeeeeeeccc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF----HITKYPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Ptl~~f~~g~~~~~~y~G 213 (493)
++.|+++||++|+++...+.+. ++.+..+|.+.+....+.+ ++.++|++.+ +|.. ..|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~----i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEH----LSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEE----Eec
Confidence 5789999999999988877652 5667778887665443333 6789999965 4432 334
Q ss_pred CCCHHHHHHH
Q psy9502 214 QRTTEALLNF 223 (493)
Q Consensus 214 ~~~~~~l~~f 223 (493)
.+...|.++
T Consensus 64 -~~~~~l~~~ 72 (73)
T cd02976 64 -FRPDKLRAL 72 (73)
T ss_pred -CCHHHHHhh
Confidence 344555554
No 196
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.42 E-value=0.00074 Score=71.90 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=73.7
Q ss_pred EcccccHHHHHc-CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE
Q psy9502 121 YLRQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK 199 (493)
Q Consensus 121 ~l~~~nf~~~l~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~ 199 (493)
.|+++..+.+-. +.+.-+-.|+++.|++|......+.+++.. +++|..-.+|+..++++.++|+|.+.|+++
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~-------~p~i~~~~id~~~~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL-------NPNISHTMIDGALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh-------CCCceEEEEEchhCHHHHHhcCCcccCEEE
Confidence 455555555433 234557789999999998777777776655 248888899999999999999999999996
Q ss_pred EEeCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 200 IIRNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 200 ~f~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
+ +|.. .+.|..+.+++++.+.+..
T Consensus 176 i--~~~~---~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 176 L--NGEE---FHNGRMDLAELLEKLEETA 199 (515)
T ss_pred E--CCcE---EEecCCCHHHHHHHHhhcc
Confidence 5 5553 4789999999988887653
No 197
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.41 E-value=0.0033 Score=67.57 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=112.5
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe-CCeeeeeecc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR-NGLATRSEYR 212 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~-~g~~~~~~y~ 212 (493)
+...|+.|+.+.|..|..+...+++++.. .++|.+-..|..++.++.++|++...|++.++. +|....++|.
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-------s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFASL-------SEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHhc-------CCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence 34578889999999999999999998854 358888889998888999999999999999995 5555556899
Q ss_pred cCCCHHHHHHHHHHHcCC--CcccCCCchh---hhccCCc-eEEEEecCCCCc---hhHHHHHHHhhhccCCcceEee--
Q psy9502 213 SQRTTEALLNFIAEELKD--PVMDLEEAPK---FNVHDKT-LMLGRFNSKNSP---EYELFSRVCSTFNHFDVCKCFA-- 281 (493)
Q Consensus 213 G~~~~~~l~~fi~~~~~~--~~~~i~s~~~---l~~~~~~-~vv~ff~~~~~~---~~~~f~~~A~~l~~~~~~~f~~-- 281 (493)
|-..-.++-.||...+.- .-..+ +.+. +..+.++ .+-.|..+.|.- ......++|... +++..-.
T Consensus 439 g~P~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~---~~i~~~~i~ 514 (555)
T TIGR03143 439 GVPSGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN---PNVEAEMID 514 (555)
T ss_pred ecCccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC---CCceEEEEE
Confidence 977766776776655432 22333 3333 3444444 455666665543 234455555553 2333222
Q ss_pred ---------eccCCCCCceEEecCCCcccccCcCChHHHHHHH
Q psy9502 282 ---------RFRHAGPPDVTLQTEDHTEAFQGVFERSRLVQWF 315 (493)
Q Consensus 282 ---------~~~~~~~p~ivf~~~~~~~~y~g~~~~~~l~~wi 315 (493)
.++....|++++.. ...+.|..+.++|..|+
T Consensus 515 ~~~~~~~~~~~~v~~vP~~~i~~---~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 515 VSHFPDLKDEYGIMSVPAIVVDD---QQVYFGKKTIEEMLELI 554 (555)
T ss_pred CcccHHHHHhCCceecCEEEECC---EEEEeeCCCHHHHHHhh
Confidence 22333367766653 35677888779998886
No 198
>PRK15000 peroxidase; Provisional
Probab=97.39 E-value=0.0011 Score=61.17 Aligned_cols=88 Identities=17% Similarity=0.284 Sum_probs=64.6
Q ss_pred CCCeEEEEEEc-CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----------------------------C
Q psy9502 133 QYKLAVVNFYA-DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE----------------------------E 183 (493)
Q Consensus 133 ~~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~----------------------------~ 183 (493)
.++.++|.||+ .||+.|..-.+.+.++++++++. ++.+..|.++. +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-----g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~ 107 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-----GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVK 107 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCC
Confidence 35789999999 59999999999999999999765 45555555542 2
Q ss_pred ccccccCccc------cCceEEEEe-CCeeeeeeccc----CCCHHHHHHHHHH
Q psy9502 184 PRIRDFFHIT------KYPTLKIIR-NGLATRSEYRS----QRTTEALLNFIAE 226 (493)
Q Consensus 184 ~~l~~~~~i~------~~Ptl~~f~-~g~~~~~~y~G----~~~~~~l~~fi~~ 226 (493)
..+++.|++. ..|+.+++. +|.... .+.| .|+.+++++.++.
T Consensus 108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~-~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRH-QVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred cHHHHHcCCccCCCCcEEeEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHH
Confidence 2455667776 689988887 455433 3333 4889999998865
No 199
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.37 E-value=0.001 Score=61.64 Aligned_cols=90 Identities=11% Similarity=0.137 Sum_probs=62.8
Q ss_pred CCeEE-EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC---------------------------CCcc
Q psy9502 134 YKLAV-VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD---------------------------EEPR 185 (493)
Q Consensus 134 ~~~~l-V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~---------------------------~~~~ 185 (493)
++.++ +.|+++||+.|..-.+.+.++..++++. ++.+..|+++ .+..
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-----~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ 101 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-----GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKE 101 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChH
Confidence 45444 4689999999999999999999999754 4555555444 2235
Q ss_pred ccccCccc------cCceEEEEeC-Ceeeeee-c--ccCCCHHHHHHHHHHHc
Q psy9502 186 IRDFFHIT------KYPTLKIIRN-GLATRSE-Y--RSQRTTEALLNFIAEEL 228 (493)
Q Consensus 186 l~~~~~i~------~~Ptl~~f~~-g~~~~~~-y--~G~~~~~~l~~fi~~~~ 228 (493)
+++.|++. ..|+.+++.+ |...... | .+.|+.+++++.+....
T Consensus 102 ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 102 LAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 66677774 4799999964 5433211 2 45689999999987643
No 200
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.36 E-value=0.0013 Score=54.10 Aligned_cols=82 Identities=9% Similarity=0.071 Sum_probs=65.1
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCC-CcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHG-DLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~-d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv 401 (493)
++++|..|+++..+.+.+.++.|+..+ ....+..+...+.+.+++|.+.+.|+.+|....+.. ...+|+. .+|.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~l-a~~f~V~--sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQAL-AARFGVL--RTPALL 88 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHH-HHHcCCC--cCCEEE
Confidence 567888899998888999999999985 224455555555444477888899999999999988 9999995 799999
Q ss_pred EEeCCc
Q psy9502 402 LDDYKH 407 (493)
Q Consensus 402 i~~~~~ 407 (493)
+...++
T Consensus 89 ~fkdGk 94 (111)
T cd02965 89 FFRDGR 94 (111)
T ss_pred EEECCE
Confidence 887664
No 201
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.35 E-value=0.00089 Score=55.50 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=71.0
Q ss_pred EcccccHHHHHcCCCeEEEEE---EcCCChhHhhhhHHHHHHHHHHhhcCCCC-CCeEEEEEeCCCCccccccCcccc--
Q psy9502 121 YLRQNNFTEVLSQYKLAVVNF---YADWCRFCHLLKPVLEETAAIVDTQYPQD-NQVVVAQINCDEEPRIRDFFHITK-- 194 (493)
Q Consensus 121 ~l~~~nf~~~l~~~~~~lV~F---ya~wC~~C~~l~p~~~~~a~~~~~~~~~~-~~v~~~~vd~~~~~~l~~~~~i~~-- 194 (493)
.+|.+|..... ..+..++.+ |+..-..-..+...+.++|+.+ + |++.|+.+|.++.....+.+|++.
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~f------k~gki~Fv~~D~~~~~~~l~~fgl~~~~ 75 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDF------PDRKLNFAVADKEDFSHELEEFGLDFSG 75 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHC------cCCeEEEEEEcHHHHHHHHHHcCCCccc
Confidence 46777777764 233333332 2223344567888999999998 5 589999999998877888999974
Q ss_pred --CceEEEEeCCeeeeeecccCC-CHHHHHHHHHHH
Q psy9502 195 --YPTLKIIRNGLATRSEYRSQR-TTEALLNFIAEE 227 (493)
Q Consensus 195 --~Ptl~~f~~g~~~~~~y~G~~-~~~~l~~fi~~~ 227 (493)
.|.+++...+. ......+.. +.++|.+|+.+.
T Consensus 76 ~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 76 GEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 99999987543 221246777 999999999864
No 202
>KOG3414|consensus
Probab=97.33 E-value=0.0015 Score=53.56 Aligned_cols=81 Identities=20% Similarity=0.360 Sum_probs=68.3
Q ss_pred ccHHHHH--cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe
Q psy9502 125 NNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 125 ~nf~~~l--~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
...++.+ ...+.++|-|--+|.+-|..+...+.++|..+++ -+.++-||.++-+++-+-|++...||+++|-
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn------fa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN------FAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh------ceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 4566655 3347899999999999999999999999999943 5788889999989999999999999999998
Q ss_pred CCeeeeeec
Q psy9502 203 NGLATRSEY 211 (493)
Q Consensus 203 ~g~~~~~~y 211 (493)
+++...+.+
T Consensus 86 n~kHmkiD~ 94 (142)
T KOG3414|consen 86 NNKHMKIDL 94 (142)
T ss_pred cCceEEEee
Confidence 887766555
No 203
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=97.32 E-value=0.0045 Score=51.49 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=73.6
Q ss_pred CCceeecCh-hcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCC
Q psy9502 320 VPLVREITY-ENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLP 398 (493)
Q Consensus 320 ~P~v~elt~-~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P 398 (493)
+..+.+++. +.+.+...++.++++.|+.+++. .++.+...+.+.+++|. .+.|+.+|.++.+.. .+.+++. .+|
T Consensus 3 ~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~-~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~l-~~~~~v~--~vP 77 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKSSERVVCHFYHPEFF-RCKIMDKHLEILAKKHL-ETKFIKVNAEKAPFL-VEKLNIK--VLP 77 (113)
T ss_pred CCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCc-cHHHHHHHHHHHHHHcC-CCEEEEEEcccCHHH-HHHCCCc--cCC
Confidence 345667777 78888888888999999999884 56666655554445655 489999999998888 8999885 899
Q ss_pred eEEEEeCCcc-ccC---CC-CCCCCCChhHHHHHH
Q psy9502 399 VLRLDDYKHI-YRL---PS-LITLAENPSTLVSIV 428 (493)
Q Consensus 399 ~ivi~~~~~~-y~~---~~-~~~~~~~~~~l~~Fi 428 (493)
.+++...+.. .++ .+ +..+..+.++|.+|+
T Consensus 78 t~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 78 TVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 9988776532 111 11 012445678888876
No 204
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.32 E-value=0.0013 Score=57.39 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 133 QYKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 133 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
+.++++|.|| ++||+.|.+..|.+.++++++++. ++.+..|+.+
T Consensus 27 g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~-----~v~vi~vs~d 71 (149)
T cd03018 27 GRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA-----GAEVLGISVD 71 (149)
T ss_pred CCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC-----CCEEEEecCC
Confidence 3377788787 999999999999999999999654 5666666554
No 205
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.32 E-value=0.0015 Score=59.47 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC-------------------------CCcccc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD-------------------------EEPRIR 187 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~-------------------------~~~~l~ 187 (493)
++++++.|| +.||+.|..-.+.+.+++.++.+. ++.+..|+.+ .+..++
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-----g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia 105 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-----GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT 105 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-----CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH
Confidence 568899999 999999999999999999998654 3444444433 234677
Q ss_pred ccCcc----ccC--ceEEEEe-CCeeeee-ec--ccCCCHHHHHHHHHHH
Q psy9502 188 DFFHI----TKY--PTLKIIR-NGLATRS-EY--RSQRTTEALLNFIAEE 227 (493)
Q Consensus 188 ~~~~i----~~~--Ptl~~f~-~g~~~~~-~y--~G~~~~~~l~~fi~~~ 227 (493)
+.|++ .+. |+.+++. +|..... .+ ...++.+++++.+...
T Consensus 106 ~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 106 RNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred HHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 88887 355 9988886 5554332 12 2347999999988653
No 206
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.31 E-value=0.0006 Score=59.05 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCCeEEEEEEcCCChh-HhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 133 QYKLAVVNFYADWCRF-CHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~-C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
.+++++|.||++||+. |.+..+.+.++++++++.. .+++.+..|.++.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~--~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADG--GDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhh--cCceEEEEEEECC
Confidence 4689999999999997 9999999999999996641 0258888887653
No 207
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.0019 Score=55.33 Aligned_cols=89 Identities=15% Similarity=0.249 Sum_probs=64.0
Q ss_pred HHcCCCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEeCCC----------------CccccccC
Q psy9502 130 VLSQYKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQINCDE----------------EPRIRDFF 190 (493)
Q Consensus 130 ~l~~~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd~~~----------------~~~l~~~~ 190 (493)
+.-.++..+++|-++.|.+|.+++... .++.+.+. +.+.+..++.+. ..+|+++|
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk------~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK------EHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh------hCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 344578999999999999999999875 34444553 346666666543 23789999
Q ss_pred ccccCceEEEEeCC-eeeeeecccCCCHHHHHHHHH
Q psy9502 191 HITKYPTLKIIRNG-LATRSEYRSQRTTEALLNFIA 225 (493)
Q Consensus 191 ~i~~~Ptl~~f~~g-~~~~~~y~G~~~~~~l~~fi~ 225 (493)
++++.||+++|.+. +.+- .--|-...++++.-++
T Consensus 112 ~vrstPtfvFfdk~Gk~Il-~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 112 AVRSTPTFVFFDKTGKTIL-ELPGYMPPEQFLAVLK 146 (182)
T ss_pred ccccCceEEEEcCCCCEEE-ecCCCCCHHHHHHHHH
Confidence 99999999999764 4443 5578788877655443
No 208
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.28 E-value=0.0015 Score=60.52 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=60.1
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------------Cccccc
Q psy9502 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------------EPRIRD 188 (493)
Q Consensus 136 ~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 188 (493)
.+|+.|+++||+.|....+.+.++++++++. ++.+..|+++. +..+++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-----gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~ 102 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-----NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAK 102 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHH
Confidence 4566899999999999999999999999765 56667666653 124566
Q ss_pred cCccc----cC----ceEEEEe-CCeeeeeeccc----CCCHHHHHHHHHHH
Q psy9502 189 FFHIT----KY----PTLKIIR-NGLATRSEYRS----QRTTEALLNFIAEE 227 (493)
Q Consensus 189 ~~~i~----~~----Ptl~~f~-~g~~~~~~y~G----~~~~~~l~~fi~~~ 227 (493)
.|++. +. |+.+++. +|.... .+.+ .|+.+++++.+...
T Consensus 103 ~yg~~~~~~~~~~~~r~~fiID~~G~I~~-~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 103 LLGMIDPDAGSTLTVRAVFIIDPDKKIRL-ILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred HcCCccccCCCCceeeEEEEECCCCeEEE-EEecCCCCCCCHHHHHHHHHHH
Confidence 77765 22 4567775 454433 2222 57888998888764
No 209
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.26 E-value=0.00055 Score=64.71 Aligned_cols=89 Identities=17% Similarity=0.377 Sum_probs=59.4
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHH-Hhhc---CC-----------------------------CCCCeEE--EEE
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAI-VDTQ---YP-----------------------------QDNQVVV--AQI 178 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~-~~~~---~~-----------------------------~~~~v~~--~~v 178 (493)
.+..++.|..+.|++|+++.+.+.++.+. +.-. +| ..+.+.- ...
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~ 186 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDV 186 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccc
Confidence 46889999999999999999988776320 0000 00 0000000 011
Q ss_pred eCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 179 d~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+..++..+++++||++.||++ +.+|.. ..|..+.+.|.+++.+.
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~----~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTL----VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeE----eeCCCCHHHHHHHHHHc
Confidence 122345788999999999998 778874 46989999999999764
No 210
>KOG0907|consensus
Probab=97.26 E-value=4.5e-05 Score=62.54 Aligned_cols=33 Identities=12% Similarity=0.045 Sum_probs=28.1
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
+++.+.|+|||+| ||+|+.++|.+++++..+..
T Consensus 20 ~~kliVvdF~a~w-----CgPCk~i~P~~~~La~~y~~ 52 (106)
T KOG0907|consen 20 GDKLVVVDFYATW-----CGPCKAIAPKFEKLAEKYPD 52 (106)
T ss_pred CCCeEEEEEECCC-----CcchhhhhhHHHHHHHHCCC
Confidence 3688899999999 99999999999887655544
No 211
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.23 E-value=0.00052 Score=58.50 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=44.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC---ccccCceEEEEeCC-eee
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF---HITKYPTLKIIRNG-LAT 207 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Ptl~~f~~g-~~~ 207 (493)
.+..++.|..+||+.|.+..|.+.++|+.. +++.+--+.-+++.++..+| +..+.|+++++.++ +..
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-------p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN-------PNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH--------TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC-------CCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 346667799999999999999999999974 36777666666777766655 67889999999654 443
No 212
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.22 E-value=0.0033 Score=51.32 Aligned_cols=94 Identities=9% Similarity=0.087 Sum_probs=66.5
Q ss_pred hcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcC---CcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC
Q psy9502 329 ENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYA---QNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY 405 (493)
Q Consensus 329 ~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~---~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~ 405 (493)
++++++ ..+++++|.|+.+++ ..++.+...+.+.+++++ ..+.++.+|+..++.. .+.+|+. .+|.+++...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC-~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~I~--~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWC-GHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI-ASEFGVR--GYPTIKLLKG 81 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCC-HHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH-HhhcCCc--cccEEEEEcC
Confidence 566665 345789999999988 445544444433333432 3599999999988888 8899985 7999888866
Q ss_pred CccccCCCCCCCCCChhHHHHHHHHH
Q psy9502 406 KHIYRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 406 ~~~y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
+..+.+. +..+.+.|.+|++++
T Consensus 82 ~~~~~~~----G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLAYNYR----GPRTKDDIVEFANRV 103 (104)
T ss_pred CCceeec----CCCCHHHHHHHHHhh
Confidence 6555543 345678999999875
No 213
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.18 E-value=0.00011 Score=61.71 Aligned_cols=32 Identities=9% Similarity=-0.176 Sum_probs=27.7
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.++++++|.|||+| |++|+.|.|.+.+..+..
T Consensus 17 ~~~kpVlV~F~a~W-----C~~C~~~~~~~~~~~~~~ 48 (117)
T cd02959 17 DSGKPLMLLIHKTW-----CGACKALKPKFAESKEIS 48 (117)
T ss_pred HcCCcEEEEEeCCc-----CHHHHHHHHHHhhhHHHH
Confidence 46789999999999 999999999998865543
No 214
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.16 E-value=0.0014 Score=56.56 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 133 QYKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 133 ~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
.+++++|.|| +.||+.|....|.+.+++++++.. ++.+..|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-----~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-----GAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEeCC
Confidence 4788999999 789999999999999999999543 5667766654
No 215
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.12 E-value=0.001 Score=48.35 Aligned_cols=54 Identities=22% Similarity=0.486 Sum_probs=42.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccc----cccCccccCceEEEEeCCe
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRI----RDFFHITKYPTLKIIRNGL 205 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Ptl~~f~~g~ 205 (493)
++.|..+||++|++.+..+++. ++.+-.+|.+.+++. .+..+..++|++.+ +|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 4789999999999999888553 688999999887533 33348899999875 665
No 216
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.09 E-value=0.0041 Score=50.06 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCcc-ccC
Q psy9502 333 EISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHI-YRL 411 (493)
Q Consensus 333 ~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~~-y~~ 411 (493)
.+.+.++++++.|+.+++ ..++.+...+....+++.+++.++.+|.+..+.. ...+|+ ..+|.+++...++. ..+
T Consensus 8 ~~~~~~~~vlv~f~a~~C-~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l-~~~~~v--~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 8 LYHESDRLILVLYTSPTC-GPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI-AEAAGI--MGTPTVQFFKDKELVKEI 83 (97)
T ss_pred HHHhCCCeEEEEEECCCC-hhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH-HHHCCC--eeccEEEEEECCeEEEEE
Confidence 455678889999999888 5566666655544456667899999999988877 888998 48999988876533 222
Q ss_pred CCCCCCCCChhHHHHHH
Q psy9502 412 PSLITLAENPSTLVSIV 428 (493)
Q Consensus 412 ~~~~~~~~~~~~l~~Fi 428 (493)
.+....+.+.+|+
T Consensus 84 ----~g~~~~~~~~~~l 96 (97)
T cd02949 84 ----SGVKMKSEYREFI 96 (97)
T ss_pred ----eCCccHHHHHHhh
Confidence 3345667777776
No 217
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.08 E-value=0.00017 Score=60.00 Aligned_cols=40 Identities=15% Similarity=0.004 Sum_probs=31.4
Q ss_pred CcceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 3 DKTHVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
+.+.+++-....+++++|.||++| |++|+.++|.+++..+
T Consensus 9 ~G~~~~l~~~~~gk~vvl~F~~~w-----C~~C~~~~p~l~~~~~ 48 (114)
T cd02967 9 DGAPVRIGGISPGRPTLLFFLSPT-----CPVCKKLLPVIRSIAR 48 (114)
T ss_pred CCCEEEcccccCCCeEEEEEECCC-----CcchHhHhHHHHHHHH
Confidence 345566666444789999999999 9999999999976533
No 218
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.08 E-value=0.0054 Score=49.96 Aligned_cols=95 Identities=12% Similarity=0.035 Sum_probs=68.5
Q ss_pred cChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCcccchhhhhccCCCCCCCCeEEEEe
Q psy9502 326 ITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDD 404 (493)
Q Consensus 326 lt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~ 404 (493)
-|.++++.+...++|++|.|+.+++ ..++.+...+.+...++++ .+.|+.+|.+ .... ++.+++. ..|.+++..
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC-~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~-~~~~~v~--~~Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWC-GPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDT-LKRYRGK--CEPTFLFYK 79 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcC-HhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHH-HHHcCCC--cCcEEEEEE
Confidence 3677888888889999999999998 5566666655544456564 4789999988 5566 8889985 789988887
Q ss_pred CCcc-ccCCCCCCCCCChhHHHHHHHH
Q psy9502 405 YKHI-YRLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 405 ~~~~-y~~~~~~~~~~~~~~l~~Fi~d 430 (493)
.+.. .+. .+. +++.|.++|+.
T Consensus 80 ~g~~~~~~----~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVI----RGA-NAPLLNKTITE 101 (102)
T ss_pred CCEEEEEE----ecC-ChHHHHHHHhh
Confidence 6542 332 222 56788888864
No 219
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.01 E-value=0.0068 Score=49.40 Aligned_cols=92 Identities=9% Similarity=0.114 Sum_probs=62.9
Q ss_pred hcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHH---HHhhhcCCcEEEEEEeCcc----cchhhhhccCCCCCCCCeEE
Q psy9502 329 ENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVR---DTIGQYAQNLSFVTADDLF----YQRIFYHHLHLSSDDLPVLR 401 (493)
Q Consensus 329 ~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~---~~~~~~~~~i~f~~~d~~~----~~~~~l~~lgi~~~~~P~iv 401 (493)
+.+.+...++++++|.|+.++| ..++.+...+. +....+.+++.++.+|... .... ++.+|+. .+|.++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC-~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~-~~~~~i~--~~Pti~ 77 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWC-VTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITAL-LKRFGVF--GPPTYL 77 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchh-HHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHH-HHHcCCC--CCCEEE
Confidence 3566777888999999999988 55666654331 1224445579999999775 4556 7889885 799998
Q ss_pred EEeC--C-ccccCCCCCCCCCChhHHHHHH
Q psy9502 402 LDDY--K-HIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 402 i~~~--~-~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+.+. + ..+++ .+..+.+.|.++|
T Consensus 78 ~~~~~~g~~~~~~----~G~~~~~~l~~~l 103 (104)
T cd02953 78 FYGPGGEPEPLRL----PGFLTADEFLEAL 103 (104)
T ss_pred EECCCCCCCCccc----ccccCHHHHHHHh
Confidence 8874 2 23443 3445667777776
No 220
>KOG0911|consensus
Probab=97.01 E-value=0.00044 Score=62.99 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=67.1
Q ss_pred HcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeee
Q psy9502 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSE 210 (493)
Q Consensus 131 l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~ 210 (493)
....+..++.|||+||..|+++..+++.+|+..+ ++.+++++.++.++++..+.+...|.+..+..|.... +
T Consensus 14 ~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~-------~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~-~ 85 (227)
T KOG0911|consen 14 DQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK-------NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD-R 85 (227)
T ss_pred HhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh-------hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh-h
Confidence 3466789999999999999999999999999881 7899999999999999999999999999998887754 4
Q ss_pred cccCC
Q psy9502 211 YRSQR 215 (493)
Q Consensus 211 y~G~~ 215 (493)
..|..
T Consensus 86 l~~~~ 90 (227)
T KOG0911|consen 86 LSGAD 90 (227)
T ss_pred hhccC
Confidence 55543
No 221
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.99 E-value=0.00027 Score=64.68 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=26.6
Q ss_pred ceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 16 EWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 16 ~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+|+|.||+|| |++|+.|.|.+++++..+.
T Consensus 103 ~~VVV~Fya~w-----c~~C~~m~~~l~~LA~k~~ 132 (192)
T cd02988 103 TWVVVHLYKDG-----IPLCRLLNQHLSELARKFP 132 (192)
T ss_pred CEEEEEEECCC-----CchHHHHHHHHHHHHHHCC
Confidence 58999999999 9999999999998866543
No 222
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.98 E-value=0.0024 Score=50.35 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=52.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc----cccccCc--cccCceEEEEeCCeeeeeec
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----RIRDFFH--ITKYPTLKIIRNGLATRSEY 211 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Ptl~~f~~g~~~~~~y 211 (493)
++.|..+||++|.+.+..+.++.... ..+.+-.+|.+.+. ++.+..+ +...|+|+ .+|...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~-------~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i---- 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER-------ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV---- 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc-------CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe----
Confidence 56799999999999999998875432 25677778877532 3544555 37889984 466532
Q ss_pred ccCCCHHHHHHHHHHHcC
Q psy9502 212 RSQRTTEALLNFIAEELK 229 (493)
Q Consensus 212 ~G~~~~~~l~~fi~~~~~ 229 (493)
|. .++|.++++++.+
T Consensus 69 -gG--~~dl~~~~~~~~~ 83 (86)
T TIGR02183 69 -GG--CTDFEQLVKENFD 83 (86)
T ss_pred -cC--HHHHHHHHHhccc
Confidence 32 3688888877543
No 223
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.98 E-value=0.0055 Score=50.91 Aligned_cols=80 Identities=18% Similarity=0.182 Sum_probs=62.1
Q ss_pred CceeecChhcHHHHHhcC---CcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCC
Q psy9502 321 PLVREITYENAEEISEEG---RPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDL 397 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~~---~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~ 397 (493)
..+.++|.+++.+...+. .++++.|+.+++ ..++.+...+++.+.+|. ++.|+.+|+... .. .+.+|+. .+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c-~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~-~l-~~~~~i~--~~ 77 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGF-PRCKILDSHLEELAAKYP-ETKFVKINAEKA-FL-VNYLDIK--VL 77 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCC-CcHHHHHHHHHHHHHHCC-CcEEEEEEchhh-HH-HHhcCCC--cC
Confidence 457888999998877554 789999999998 556667666665556655 589999999987 66 7889885 89
Q ss_pred CeEEEEeCC
Q psy9502 398 PVLRLDDYK 406 (493)
Q Consensus 398 P~ivi~~~~ 406 (493)
|.+++...+
T Consensus 78 Pt~~~f~~G 86 (113)
T cd02957 78 PTLLVYKNG 86 (113)
T ss_pred CEEEEEECC
Confidence 998887765
No 224
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.97 E-value=0.0054 Score=57.25 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=63.3
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------------Cccccc
Q psy9502 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------------EPRIRD 188 (493)
Q Consensus 136 ~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 188 (493)
.+|+.|+++||+.|..-.+.|.+++.++++. ++.+..|+++. +..+++
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-----gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKEL-----NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 4577899999999999999999999999765 46666666553 234566
Q ss_pred cCccc-------cCceEEEEe-CCeeeeee-c--ccCCCHHHHHHHHHHH
Q psy9502 189 FFHIT-------KYPTLKIIR-NGLATRSE-Y--RSQRTTEALLNFIAEE 227 (493)
Q Consensus 189 ~~~i~-------~~Ptl~~f~-~g~~~~~~-y--~G~~~~~~l~~fi~~~ 227 (493)
.|++. ..|+++++. +|...... | ...|+.+++++.+...
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 77763 579999996 45554322 3 2347899999998754
No 225
>PRK13189 peroxiredoxin; Provisional
Probab=96.97 E-value=0.0047 Score=58.02 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=61.7
Q ss_pred CC-eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------------Ccc
Q psy9502 134 YK-LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------------EPR 185 (493)
Q Consensus 134 ~~-~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~ 185 (493)
++ .+|+.|+++||+.|..-.+.|.+++.++++. ++.+..|.++. ...
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-----~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ 109 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-----NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGE 109 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-----CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccH
Confidence 44 5556788999999999999999999999765 45555555542 234
Q ss_pred ccccCccc-------cCceEEEEe-CCeeeeee-c--ccCCCHHHHHHHHHHH
Q psy9502 186 IRDFFHIT-------KYPTLKIIR-NGLATRSE-Y--RSQRTTEALLNFIAEE 227 (493)
Q Consensus 186 l~~~~~i~-------~~Ptl~~f~-~g~~~~~~-y--~G~~~~~~l~~fi~~~ 227 (493)
+++.|++. ..|+.+++. +|...... | ...|+.+++++.|...
T Consensus 110 ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 110 IAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 56677764 368888886 55543322 2 2567889998888754
No 226
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.96 E-value=0.013 Score=49.00 Aligned_cols=81 Identities=19% Similarity=0.374 Sum_probs=64.6
Q ss_pred cccHHHHH--cCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc-eEEE
Q psy9502 124 QNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP-TLKI 200 (493)
Q Consensus 124 ~~nf~~~l--~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P-tl~~ 200 (493)
+-..++++ +.++.++|-|-.+|-+.|.++...+.++|.+++ .-..++.||.++-+++.+.|.+. -| |+++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~------~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmF 80 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK------NFAVIYLVDIDEVPDFNQMYELY-DPCTVMF 80 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT------TTEEEEEEETTTTHCCHHHTTS--SSEEEEE
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhh------cceEEEEEEcccchhhhcccccC-CCeEEEE
Confidence 34567755 456799999999999999999999999999994 35889999999999999999999 67 5777
Q ss_pred EeCCeeeeeec
Q psy9502 201 IRNGLATRSEY 211 (493)
Q Consensus 201 f~~g~~~~~~y 211 (493)
|-+++.....|
T Consensus 81 F~rnkhm~vD~ 91 (133)
T PF02966_consen 81 FFRNKHMMVDF 91 (133)
T ss_dssp EETTEEEEEES
T ss_pred EecCeEEEEEe
Confidence 76777666565
No 227
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.92 E-value=0.0031 Score=48.74 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=42.8
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC---ccccccCccccCceEEEEeCCee
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE---PRIRDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Ptl~~f~~g~~ 206 (493)
+.-++.|+.+||++|++.+..+.+. +|.+-.+|++++ ..+.+..+...+|.+. .+|..
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~------------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~ 67 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK------------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKL 67 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc------------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEE
Confidence 4456789999999999999888642 577777888766 3344456778899984 46654
No 228
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.92 E-value=0.00019 Score=58.98 Aligned_cols=32 Identities=3% Similarity=-0.259 Sum_probs=28.2
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
+++.|.|+|+|+| |++|+.++|.++++++-+.
T Consensus 13 ~~klVVVdF~a~W-----C~pCk~mdp~l~ela~~~~ 44 (114)
T cd02986 13 AEKVLVLRFGRDE-----DAVCLQLDDILSKTSHDLS 44 (114)
T ss_pred CCCEEEEEEeCCC-----ChhHHHHHHHHHHHHHHcc
Confidence 6899999999999 9999999999998765543
No 229
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=96.91 E-value=0.0081 Score=46.92 Aligned_cols=90 Identities=11% Similarity=0.145 Sum_probs=64.5
Q ss_pred cHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCc-c
Q psy9502 330 NAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKH-I 408 (493)
Q Consensus 330 n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~-~ 408 (493)
++......+.++++.|+.+++. .+..+...+.+.+.. .+++.|+.+|....... +..+|+. ..|.+++...+. .
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~-~C~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~-~~~~~v~--~~P~~~~~~~g~~~ 76 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCG-PCKAIAPVLEELAEE-YPKVKFVKVDVDENPEL-AEEYGVR--SIPTFLFFKNGKEV 76 (93)
T ss_pred chHHHHhcCCcEEEEEECCCCh-hHHHhhHHHHHHHHH-CCCceEEEEECCCChhH-HHhcCcc--cccEEEEEECCEEE
Confidence 4555566668999999998874 466666666554444 56799999999987777 8889885 689998887664 3
Q ss_pred ccCCCCCCCCCChhHHHHHH
Q psy9502 409 YRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 409 y~~~~~~~~~~~~~~l~~Fi 428 (493)
..+.. ..+.+.|.+||
T Consensus 77 ~~~~g----~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVG----ADPKEELEEFL 92 (93)
T ss_pred EEEec----CCCHHHHHHHh
Confidence 44332 23457888876
No 230
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.88 E-value=0.00066 Score=62.62 Aligned_cols=86 Identities=15% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHH--------------------------------hhcCCCCC---CeEEEEE
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIV--------------------------------DTQYPQDN---QVVVAQI 178 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~--------------------------------~~~~~~~~---~v~~~~v 178 (493)
.+..++.|+.+.|++|+++.+.+.+....+ ........ .......
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~ 156 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDN 156 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCc
Confidence 578999999999999999998877510000 00000000 0001112
Q ss_pred eCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 179 d~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
+..++..++++++|++.|+++ +.+|.. ..|..+.+.|.+|+
T Consensus 157 ~i~~~~~l~~~~gi~gtPtii-~~~G~~----~~G~~~~~~l~~~L 197 (197)
T cd03020 157 PVAANLALGRQLGVNGTPTIV-LADGRV----VPGAPPAAQLEALL 197 (197)
T ss_pred hHHHHHHHHHHcCCCcccEEE-ECCCeE----ecCCCCHHHHHhhC
Confidence 222345688899999999996 778764 56888888887764
No 231
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.86 E-value=0.0075 Score=57.73 Aligned_cols=89 Identities=15% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----------------------------Cc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE----------------------------EP 184 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~----------------------------~~ 184 (493)
++.+++.|| ++||+.|..-.+.|.++.+++++. ++.+..|.++. +.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-----gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~ 172 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-----GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISR 172 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCCh
Confidence 456777777 899999999999999999999765 34444444432 23
Q ss_pred cccccCccc-----cCceEEEEe-CCeeeeee-c--ccCCCHHHHHHHHHHH
Q psy9502 185 RIRDFFHIT-----KYPTLKIIR-NGLATRSE-Y--RSQRTTEALLNFIAEE 227 (493)
Q Consensus 185 ~l~~~~~i~-----~~Ptl~~f~-~g~~~~~~-y--~G~~~~~~l~~fi~~~ 227 (493)
.+++.||+. ..|+.+++. +|...... | ...|+.+++++-|...
T Consensus 173 ~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 173 EVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 577788875 479999996 56554322 3 3458999999888643
No 232
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.85 E-value=0.006 Score=49.93 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=66.7
Q ss_pred ccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEe
Q psy9502 123 RQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 123 ~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~ 202 (493)
+.++++.++..++.++|-|+..--. .....|.++|+.+++ ...|+... +..+..++++ .|++++|+
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~------d~~F~~~~---~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE------SFRFAHTS---DKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh------cCEEEEEC---hHHHHHhcCC--CCceEEEe
Confidence 3456777888888888888876432 567889999999843 56787654 3466788888 69999995
Q ss_pred CC------eeeeeecccCCCHHHHHHHHHHH
Q psy9502 203 NG------LATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 203 ~g------~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+. ......|.|..+.++|.+||..+
T Consensus 73 p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 42 12224699998999999999864
No 233
>KOG0908|consensus
Probab=96.85 E-value=0.00026 Score=65.21 Aligned_cols=34 Identities=9% Similarity=-0.096 Sum_probs=29.0
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
...+.+.|+|+|.| ||+||.+||+++..+..|..
T Consensus 19 ag~k~v~Vdfta~w-----CGPCk~IaP~Fs~lankYp~ 52 (288)
T KOG0908|consen 19 AGGKLVVVDFTASW-----CGPCKRIAPIFSDLANKYPG 52 (288)
T ss_pred cCceEEEEEEEecc-----cchHHhhhhHHHHhhhhCcc
Confidence 45678999999999 99999999999988766643
No 234
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.82 E-value=0.012 Score=46.99 Aligned_cols=76 Identities=9% Similarity=0.132 Sum_probs=56.3
Q ss_pred hhcHHHHHhcC--CcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC
Q psy9502 328 YENAEEISEEG--RPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY 405 (493)
Q Consensus 328 ~~n~~~l~~~~--~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~ 405 (493)
.+++..+.... +++++.|+.+++ ..++.+...+.+...++...+.|+.+|....+.. ...+|+. .+|++++...
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C-~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~-~~~~~i~--~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWA-EPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI-SEKFEIT--AVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCC-HHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH-HHhcCCc--cccEEEEEEC
Confidence 45566666554 899999999888 4556666555444445456899999999988888 8999985 6999888876
Q ss_pred Cc
Q psy9502 406 KH 407 (493)
Q Consensus 406 ~~ 407 (493)
++
T Consensus 78 g~ 79 (97)
T cd02984 78 GT 79 (97)
T ss_pred CE
Confidence 54
No 235
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.80 E-value=0.0029 Score=49.07 Aligned_cols=57 Identities=21% Similarity=0.446 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-----cccccCccccCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-----RIRDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Ptl~~f~~g~~ 206 (493)
++.|+++||++|+.+.+.+.++.. ...+..++...+. .+.+..++.++|++ |.+|..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 478999999999999999998643 2345556655441 24455678889996 556654
No 236
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.78 E-value=0.012 Score=48.80 Aligned_cols=74 Identities=11% Similarity=-0.003 Sum_probs=57.5
Q ss_pred hcHHHHHh--cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCC
Q psy9502 329 ENAEEISE--EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK 406 (493)
Q Consensus 329 ~n~~~l~~--~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~ 406 (493)
+.+.+... .++++++-|+.+++ ..++.+...+.+.+.+|.+.+.|+.+|.+..+.. ...+|+. ..|.+++...+
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WC-gpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l-a~~~~V~--~iPTf~~fk~G 78 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWD-PVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF-NKMYELY--DPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCC-hhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH-HHHcCCC--CCCEEEEEECC
Confidence 44555554 46789999999998 5566666655554467788899999999999988 9999995 69999887765
No 237
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.77 E-value=0.014 Score=60.34 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=75.5
Q ss_pred CceeecChhcHHHHHh---cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCc-EEEEEEeCcccchhhh-hccCCCCC
Q psy9502 321 PLVREITYENAEEISE---EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQN-LSFVTADDLFYQRIFY-HHLHLSSD 395 (493)
Q Consensus 321 P~v~elt~~n~~~l~~---~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~-i~f~~~d~~~~~~~~l-~~lgi~~~ 395 (493)
+.|.+||.+|++.+.. .+++++|.|+.+++ ..++.+...+.+.+++|+++ +.|+.+|++......+ +.+++.
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC-~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~-- 427 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWC-PFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLG-- 427 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCC-hHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCC--
Confidence 5789999999999875 67899999999998 55666665555444566654 8899998886543214 578885
Q ss_pred CCCeEEEEeCCc--cccCCCCCCCCCChhHHHHHHHHH
Q psy9502 396 DLPVLRLDDYKH--IYRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 396 ~~P~ivi~~~~~--~y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
.+|.|++...++ ...|+. +.-+.++|..||+.+
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~---g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPS---EKRDVDSLMSFVNLL 462 (463)
T ss_pred ccceEEEEECCCCCceeCCC---CCCCHHHHHHHHHhh
Confidence 899998887653 223331 234678999999865
No 238
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.77 E-value=0.0098 Score=55.52 Aligned_cols=87 Identities=10% Similarity=0.128 Sum_probs=60.9
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC---------------------------Cccccc
Q psy9502 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE---------------------------EPRIRD 188 (493)
Q Consensus 136 ~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~ 188 (493)
.+|+.|+++||+.|..-.+.|.+++.++++. ++.+..|+++. +..+++
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-----g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~ 110 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-----NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAK 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHH
Confidence 4445889999999999999999999999765 46666666553 224555
Q ss_pred cCccc-------cCceEEEEe-CCeeeeee-cc--cCCCHHHHHHHHHHH
Q psy9502 189 FFHIT-------KYPTLKIIR-NGLATRSE-YR--SQRTTEALLNFIAEE 227 (493)
Q Consensus 189 ~~~i~-------~~Ptl~~f~-~g~~~~~~-y~--G~~~~~~l~~fi~~~ 227 (493)
.|++. ..|+.+++. +|...... |. -.|+.+++++.+...
T Consensus 111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 66652 358888886 45443322 22 348999999999764
No 239
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.76 E-value=0.0023 Score=55.54 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=35.6
Q ss_pred CCeEEEEEEcCC-ChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 134 YKLAVVNFYADW-CRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 134 ~~~~lV~Fya~w-C~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
+++++|.||+.| |++|++-.|.+.++++++ . ++.+..|+.+.
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~------~-~~~vi~Is~d~ 68 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKL------D-NTVVLTISADL 68 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc------C-CCEEEEEECCC
Confidence 678999999999 699999999999998886 1 57788888764
No 240
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.76 E-value=0.012 Score=48.96 Aligned_cols=90 Identities=11% Similarity=0.053 Sum_probs=63.2
Q ss_pred HhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCC---ccccC
Q psy9502 335 SEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK---HIYRL 411 (493)
Q Consensus 335 ~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~---~~y~~ 411 (493)
+..+.++++.|+.+++ ..++.+...+.+.+..+ +++.|..+|.+..+.. ...+|+. .+|.+++...+ ....|
T Consensus 19 l~~~~~vvv~f~a~wC-~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~~l-~~~~~v~--~vPt~~i~~~g~~~~~~~~ 93 (113)
T cd02975 19 MKNPVDLVVFSSKEGC-QYCEVTKQLLEELSELS-DKLKLEIYDFDEDKEK-AEKYGVE--RVPTTIFLQDGGKDGGIRY 93 (113)
T ss_pred hCCCeEEEEEeCCCCC-CChHHHHHHHHHHHHhc-CceEEEEEeCCcCHHH-HHHcCCC--cCCEEEEEeCCeecceEEE
Confidence 3456667777777776 45565555554444554 6799999999998888 8999985 78999997653 22232
Q ss_pred CCCCCCCCChhHHHHHHHHHHc
Q psy9502 412 PSLITLAENPSTLVSIVEDYFS 433 (493)
Q Consensus 412 ~~~~~~~~~~~~l~~Fi~d~~s 433 (493)
.+......+.+||.++.+
T Consensus 94 ----~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 94 ----YGLPAGYEFASLIEDIVR 111 (113)
T ss_pred ----EecCchHHHHHHHHHHHh
Confidence 345566789999998864
No 241
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.72 E-value=0.012 Score=51.64 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=63.3
Q ss_pred ceeecChhcHHHHHhc--CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCcccchhhhhccCCCC----
Q psy9502 322 LVREITYENAEEISEE--GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDLFYQRIFYHHLHLSS---- 394 (493)
Q Consensus 322 ~v~elt~~n~~~l~~~--~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~~~~~~~l~~lgi~~---- 394 (493)
.+.+++.+++.+.... +.+++|.|+.+++ ..++.+...+++.++++.+ ++.|+.+|.++++.. .+.+++..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC-~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~l-a~~~~V~~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFTTWS-PECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNV-AEKFRVSTSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEECCCC-HHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHH-HHHcCceecCCc
Confidence 4778889999887643 4688999999988 5566666666554455554 599999999999988 99999863
Q ss_pred CCCCeEEEEeCC
Q psy9502 395 DDLPVLRLDDYK 406 (493)
Q Consensus 395 ~~~P~ivi~~~~ 406 (493)
..+|.+++...+
T Consensus 107 ~~~PT~ilf~~G 118 (152)
T cd02962 107 KQLPTIILFQGG 118 (152)
T ss_pred CCCCEEEEEECC
Confidence 348998887665
No 242
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.72 E-value=0.013 Score=47.71 Aligned_cols=96 Identities=8% Similarity=0.156 Sum_probs=69.4
Q ss_pred cEEc-ccccHHHHHc-CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCc
Q psy9502 119 VKYL-RQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYP 196 (493)
Q Consensus 119 v~~l-~~~nf~~~l~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 196 (493)
|..| +.+.++.++. ++..++|-|+..--. .....|.++|+.++ ..+.|+... +..+...+++. .|
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R------~d~~F~~~~---~~~~~~~~~~~-~~ 68 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFH------PYIKFFATF---DSKVAKKLGLK-MN 68 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhh------cCCEEEEEC---cHHHHHHcCCC-CC
Confidence 3455 4456888888 788888888876433 45678999999984 356776543 34566777765 69
Q ss_pred eEEEEeCCeeeeeec-ccCCCHHHHHHHHHHH
Q psy9502 197 TLKIIRNGLATRSEY-RSQRTTEALLNFIAEE 227 (493)
Q Consensus 197 tl~~f~~g~~~~~~y-~G~~~~~~l~~fi~~~ 227 (493)
+++++++.......| .|..+.+.|.+||..+
T Consensus 69 ~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 69 EVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred cEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 999997733333469 7888999999999864
No 243
>PLN02309 5'-adenylylsulfate reductase
Probab=96.71 E-value=0.017 Score=59.85 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=74.6
Q ss_pred CceeecChhcHHHHHh---cCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCC-cEEEEEEeCc-ccchhhhh-ccCCCC
Q psy9502 321 PLVREITYENAEEISE---EGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ-NLSFVTADDL-FYQRIFYH-HLHLSS 394 (493)
Q Consensus 321 P~v~elt~~n~~~l~~---~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~-~i~f~~~d~~-~~~~~~l~-~lgi~~ 394 (493)
+.|.++|.+|++++.. .+++++|.|+.+++ ..++.+...+.+.+.+|.+ .+.|+.+|++ ..... +. .+++.
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC-~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l-a~~~~~I~- 421 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWC-PFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF-AKQELQLG- 421 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCC-hHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH-HHhhCCCc-
Confidence 5788999999999873 67899999999998 4556555555444455554 4999999998 55555 54 68885
Q ss_pred CCCCeEEEEeCCcc--ccCCCCCCCCCChhHHHHHHHHH
Q psy9502 395 DDLPVLRLDDYKHI--YRLPSLITLAENPSTLVSIVEDY 431 (493)
Q Consensus 395 ~~~P~ivi~~~~~~--y~~~~~~~~~~~~~~l~~Fi~d~ 431 (493)
.+|.|++...+.. ..|+. +.-+.++|.+||+.+
T Consensus 422 -~~PTil~f~~g~~~~v~Y~~---~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 -SFPTILLFPKNSSRPIKYPS---EKRDVDSLLSFVNSL 456 (457)
T ss_pred -eeeEEEEEeCCCCCeeecCC---CCcCHHHHHHHHHHh
Confidence 8999998876532 23321 223568899999875
No 244
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.68 E-value=0.0029 Score=47.20 Aligned_cols=56 Identities=25% Similarity=0.374 Sum_probs=40.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccccc----CccccCceEEEEeCCeee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF----FHITKYPTLKIIRNGLAT 207 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Ptl~~f~~g~~~ 207 (493)
++.|+++||++|++....+.+. ++.+-.+|...+++..+. .+...+|++ |.+|...
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~------------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL------------GIEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5679999999999999998875 466778888877643333 355667776 4566543
No 245
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.61 E-value=0.0035 Score=51.08 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=62.9
Q ss_pred CCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhH---HHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc
Q psy9502 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKP---VLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT 193 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p---~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 193 (493)
.....++.++++.++......++.| +.-|..+.+... ++-++.+.+ .+.+..+.|.-..+..+..+|++.
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~-~gDp~r~~E~~DvaVILPEL~~af------~~~~~~avv~~~~e~~L~~r~gv~ 81 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFF-AGDPARFPETADVAVILPELVKAF------PGRFRGAVVARAAERALAARFGVR 81 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEE-SS-TTTSTTCCHHHHHHHHHHCTS------TTSEEEEEEEHHHHHHHHHHHT-T
T ss_pred cCCeeechhhHHHHHhCCCcEEEEE-CCCCCcCcccccceeEcHHHHHhh------hCccceEEECchhHHHHHHHhCCc
Confidence 4567889999999998877766555 444444444444 444554444 567888888867778999999999
Q ss_pred cCceEEEEeCCeeeeeecccCCC
Q psy9502 194 KYPTLKIIRNGLATRSEYRSQRT 216 (493)
Q Consensus 194 ~~Ptl~~f~~g~~~~~~y~G~~~ 216 (493)
.+|++++|++|.... .-.|-++
T Consensus 82 ~~PaLvf~R~g~~lG-~i~gi~d 103 (107)
T PF07449_consen 82 RWPALVFFRDGRYLG-AIEGIRD 103 (107)
T ss_dssp SSSEEEEEETTEEEE-EEESSST
T ss_pred cCCeEEEEECCEEEE-EecCeec
Confidence 999999999998754 3344443
No 246
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.59 E-value=0.012 Score=54.25 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=62.1
Q ss_pred CCeEEEEEEc-CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC----------------------------c
Q psy9502 134 YKLAVVNFYA-DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE----------------------------P 184 (493)
Q Consensus 134 ~~~~lV~Fya-~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~----------------------------~ 184 (493)
++.++|.||+ +||+.|..-.+.+.++++++++. ++.+..|+++.. .
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-----g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~ 110 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-----NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTK 110 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-----CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHh
Confidence 5788889995 78999999999999999999765 566666666532 2
Q ss_pred cccccCccc------cCceEEEEeC-Ceeeeee-c--ccCCCHHHHHHHHHHH
Q psy9502 185 RIRDFFHIT------KYPTLKIIRN-GLATRSE-Y--RSQRTTEALLNFIAEE 227 (493)
Q Consensus 185 ~l~~~~~i~------~~Ptl~~f~~-g~~~~~~-y--~G~~~~~~l~~fi~~~ 227 (493)
.+++.|++. .+|+.+++.+ |...... + .-.|+.+++++.|...
T Consensus 111 ~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 111 SIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 456677774 3688888874 4433211 1 2347888888887653
No 247
>PHA03050 glutaredoxin; Provisional
Probab=96.56 E-value=0.0063 Score=50.11 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-------ccccccCccccCceEEE
Q psy9502 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-------PRIRDFFHITKYPTLKI 200 (493)
Q Consensus 128 ~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-------~~l~~~~~i~~~Ptl~~ 200 (493)
++.+++++ ++.|..+||++|++.+..+++..-.. -.+-.+|.++. ..+.+.-|.+..|+|
T Consensus 7 ~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-- 73 (108)
T PHA03050 7 QQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI-- 73 (108)
T ss_pred HHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--
Confidence 34555544 66799999999999999987752110 14556666652 134455577789998
Q ss_pred EeCCeee
Q psy9502 201 IRNGLAT 207 (493)
Q Consensus 201 f~~g~~~ 207 (493)
|-+|+.+
T Consensus 74 fI~g~~i 80 (108)
T PHA03050 74 FFGKTSI 80 (108)
T ss_pred EECCEEE
Confidence 4566543
No 248
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.53 E-value=0.0052 Score=49.77 Aligned_cols=62 Identities=26% Similarity=0.362 Sum_probs=41.6
Q ss_pred HHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc-------ccccCccccCceEEEEe
Q psy9502 130 VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR-------IRDFFHITKYPTLKIIR 202 (493)
Q Consensus 130 ~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~-------l~~~~~i~~~Ptl~~f~ 202 (493)
.+++++ ++.|..+||++|++.+..+.+. ++.+..+|.++.++ +.+..+...+|.| |-
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi 67 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FV 67 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc------------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EE
Confidence 444443 5679999999999999877764 56566777776543 2223356788997 56
Q ss_pred CCeee
Q psy9502 203 NGLAT 207 (493)
Q Consensus 203 ~g~~~ 207 (493)
+|+..
T Consensus 68 ~g~~i 72 (99)
T TIGR02189 68 GGKLV 72 (99)
T ss_pred CCEEE
Confidence 77543
No 249
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.48 E-value=0.015 Score=47.08 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=62.5
Q ss_pred cccHHHHHcC--CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc----cccccCccc-cCc
Q psy9502 124 QNNFTEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----RIRDFFHIT-KYP 196 (493)
Q Consensus 124 ~~nf~~~l~~--~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~-~~P 196 (493)
.+.++++++. +++++|.=.++.|+-+.+....|++..... .+.+.++-+|.-+++ .+++++||. .-|
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~------~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSP 80 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEES------PDEIPVYYLDVIEYRPVSNAIAEDFGVKHESP 80 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHH------T----EEEEEGGGGHHHHHHHHHHHT----SS
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcC------CccceEEEEEEEeCchhHHHHHHHhCCCcCCC
Confidence 4678888866 678888779999999999999999988776 334899999998875 567789996 469
Q ss_pred eEEEEeCCeeeeeecccCCCHHHH
Q psy9502 197 TLKIIRNGLATRSEYRSQRTTEAL 220 (493)
Q Consensus 197 tl~~f~~g~~~~~~y~G~~~~~~l 220 (493)
.++++++|+.....=.+..+.++|
T Consensus 81 Q~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cEEEEECCEEEEECccccCCHHhc
Confidence 999999999864222344555544
No 250
>PTZ00051 thioredoxin; Provisional
Probab=96.48 E-value=0.021 Score=45.76 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=58.4
Q ss_pred eecC-hhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEE
Q psy9502 324 REIT-YENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRL 402 (493)
Q Consensus 324 ~elt-~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi 402 (493)
.+++ .+++..+...+.++++.|+.+++ ..++.+...+.....++. .+.|+.+|....... ++.+|+. .+|.+++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C-~~C~~~~~~l~~l~~~~~-~~~~~~vd~~~~~~~-~~~~~v~--~~Pt~~~ 77 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWC-GPCKRIAPFYEECSKEYT-KMVFVKVDVDELSEV-AEKENIT--SMPTFKV 77 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCC-HHHHHHhHHHHHHHHHcC-CcEEEEEECcchHHH-HHHCCCc--eeeEEEE
Confidence 3344 46777888888999999999988 446666655554334533 599999999988888 8999995 7999888
Q ss_pred EeCC
Q psy9502 403 DDYK 406 (493)
Q Consensus 403 ~~~~ 406 (493)
...+
T Consensus 78 ~~~g 81 (98)
T PTZ00051 78 FKNG 81 (98)
T ss_pred EeCC
Confidence 7655
No 251
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.47 E-value=0.024 Score=47.84 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=67.2
Q ss_pred cHHHHHhcC-CcEEEEEEeCCCcchHHHHHHHHHH--Hh-hhcCCcEEEEEEeCccc-------------chhhhhccCC
Q psy9502 330 NAEEISEEG-RPLLILCHRHGDLTSVAIFKRIVRD--TI-GQYAQNLSFVTADDLFY-------------QRIFYHHLHL 392 (493)
Q Consensus 330 n~~~l~~~~-~p~lilf~~~~d~~~~~~~~~~~~~--~~-~~~~~~i~f~~~d~~~~-------------~~~~l~~lgi 392 (493)
.+++...++ +|++|.|+.++| ..++.+...+.. .+ +.+++++.++.+|.... ... ...+|+
T Consensus 5 ~~~~a~~~~~k~vlv~f~a~wC-~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l-~~~~~v 82 (125)
T cd02951 5 DLAEAAADGKKPLLLLFSQPGC-PYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKEL-ARKYRV 82 (125)
T ss_pred HHHHHHHcCCCcEEEEEeCCCC-HHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHH-HHHcCC
Confidence 445566778 999999999998 567776654431 11 33445688888876642 344 677887
Q ss_pred CCCCCCeEEEEeCC-ccccCCCCCCCCCChhHHHHHHHHHHcCC
Q psy9502 393 SSDDLPVLRLDDYK-HIYRLPSLITLAENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 393 ~~~~~P~ivi~~~~-~~y~~~~~~~~~~~~~~l~~Fi~d~~sGk 435 (493)
. ..|.+++.+.+ .+-... ..+..+.+.+.++|+.+.++-
T Consensus 83 ~--~~Pt~~~~~~~gg~~~~~--~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 83 R--FTPTVIFLDPEGGKEIAR--LPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred c--cccEEEEEcCCCCceeEE--ecCCCCHHHHHHHHHHHHhhh
Confidence 4 78998888875 332222 233456789999999988763
No 252
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.36 E-value=0.016 Score=43.68 Aligned_cols=66 Identities=20% Similarity=0.340 Sum_probs=45.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc---ccccCccccCceEEEEeCCeeeeeecccC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR---IRDFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
++.|..+||++|.+.+..+.+. ++.+-.+|.+++.. +....+...+|.+ |.+|... |
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i-----g- 62 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI-----G- 62 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE-----e-
Confidence 5779999999999998777742 67777888876642 2223477789997 5666543 3
Q ss_pred CCHHHHHHHH
Q psy9502 215 RTTEALLNFI 224 (493)
Q Consensus 215 ~~~~~l~~fi 224 (493)
..++|.+|+
T Consensus 63 -g~~~l~~~l 71 (72)
T cd03029 63 -GSDDLEKYF 71 (72)
T ss_pred -CHHHHHHHh
Confidence 256676665
No 253
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.25 E-value=0.037 Score=46.32 Aligned_cols=94 Identities=14% Similarity=0.124 Sum_probs=62.1
Q ss_pred hhcHHHHHhc--CCcEEEEEEe-------CCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCccc-------chhhhhccC
Q psy9502 328 YENAEEISEE--GRPLLILCHR-------HGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFY-------QRIFYHHLH 391 (493)
Q Consensus 328 ~~n~~~l~~~--~~p~lilf~~-------~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~-------~~~~l~~lg 391 (493)
.+++.+.... ++|++|.|+. .++ ..++.....+.+.++++.+++.|+.+|.... ..+ ..+++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC-~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~-~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWC-PDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPF-RTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCC-HhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhh-HhccC
Confidence 3445555554 7899999999 676 4456555555544466676799999998753 344 67788
Q ss_pred CCCCCCCeEEEEeCCccccCCCCCCCCCChhHHHHHH
Q psy9502 392 LSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIV 428 (493)
Q Consensus 392 i~~~~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi 428 (493)
+. ..+|.+++...+.+.. ..+......+..|+
T Consensus 87 I~-~~iPT~~~~~~~~~l~----~~~c~~~~~~~~~~ 118 (119)
T cd02952 87 LT-TGVPTLLRWKTPQRLV----EDECLQADLVEMFF 118 (119)
T ss_pred cc-cCCCEEEEEcCCceec----chhhcCHHHHHHhh
Confidence 85 5899999886554333 13345556677664
No 254
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.25 E-value=0.0058 Score=46.26 Aligned_cols=66 Identities=24% Similarity=0.397 Sum_probs=46.3
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC---ccccCceEEEEeCCeeeeeecccCC
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF---HITKYPTLKIIRNGLATRSEYRSQR 215 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Ptl~~f~~g~~~~~~y~G~~ 215 (493)
+.|..++|++|++.+..+.+. ++.+-.+|.++++.....+ +...+|++.+ +|.. .-|..
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~------------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~----~~~G~ 63 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH------------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL----SWSGF 63 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC------------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc----EEecc
Confidence 568889999999999888752 7888889998887555544 7778999744 4432 33445
Q ss_pred CHHHHHH
Q psy9502 216 TTEALLN 222 (493)
Q Consensus 216 ~~~~l~~ 222 (493)
+.+.|.+
T Consensus 64 ~~~~~~~ 70 (72)
T TIGR02194 64 RPDKLKA 70 (72)
T ss_pred CHHHHHh
Confidence 5555543
No 255
>PHA02125 thioredoxin-like protein
Probab=96.23 E-value=0.00076 Score=51.64 Aligned_cols=21 Identities=5% Similarity=-0.221 Sum_probs=19.2
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
+|.||||| |+||+.+.|.+++
T Consensus 2 iv~f~a~w-----C~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEW-----CANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCC-----CHhHHHHHHHHHH
Confidence 68999999 9999999999864
No 256
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.20 E-value=0.0051 Score=47.44 Aligned_cols=55 Identities=22% Similarity=0.448 Sum_probs=39.9
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccccc----CccccCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF----FHITKYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Ptl~~f~~g~~ 206 (493)
++.|..+||++|.+.+..+++. ++.+-.+|.+.++...+. .+...+|++ |-+|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~------------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK------------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc------------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 3578899999999999998763 566777788777544333 467789997 456653
No 257
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.20 E-value=0.026 Score=43.84 Aligned_cols=72 Identities=17% Similarity=0.221 Sum_probs=51.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccc---ccCccccCceEEEEeCCeeeeeecccC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR---DFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
++.|..+||++|++.+..+++. +|.+-.+|.+++++.. +..+....|++++ ++.. -+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~------------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~-----~~G 63 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR------------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS-----WSG 63 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC------------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE-----Eec
Confidence 5678999999999988888542 7889999999876533 2346678899854 4432 234
Q ss_pred CCHHHHHHHHHHHc
Q psy9502 215 RTTEALLNFIAEEL 228 (493)
Q Consensus 215 ~~~~~l~~fi~~~~ 228 (493)
.+.+.|.+.+....
T Consensus 64 f~~~~l~~~~~~~~ 77 (81)
T PRK10329 64 FRPDMINRLHPAPH 77 (81)
T ss_pred CCHHHHHHHHHhhh
Confidence 56778877776554
No 258
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.16 E-value=0.00085 Score=51.53 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=20.9
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
-|+|||+| |++|+.+.|.++++.+
T Consensus 2 ~i~~~a~~-----C~~C~~~~~~~~~~~~ 25 (76)
T TIGR00412 2 KIQIYGTG-----CANCQMTEKNVKKAVE 25 (76)
T ss_pred EEEEECCC-----CcCHHHHHHHHHHHHH
Confidence 38999999 9999999999987543
No 259
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.16 E-value=0.065 Score=48.29 Aligned_cols=106 Identities=11% Similarity=0.088 Sum_probs=72.8
Q ss_pred cCCceeecCh-hcHHHHHhcC---CcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCC
Q psy9502 319 CVPLVREITY-ENAEEISEEG---RPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSS 394 (493)
Q Consensus 319 ~~P~v~elt~-~n~~~l~~~~---~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~ 394 (493)
.+..|.+++. +++.+..... .+++|.|+.+++ ..++.+...+...+.+|. .+.|+.+|+... .. ...|++.
T Consensus 60 ~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc-~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~-~l-~~~f~v~- 134 (175)
T cd02987 60 RFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGI-PGCAALNSSLLCLAAEYP-AVKFCKIRASAT-GA-SDEFDTD- 134 (175)
T ss_pred CCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCC-chHHHHHHHHHHHHHHCC-CeEEEEEeccch-hh-HHhCCCC-
Confidence 3567889988 8888876542 388999999887 456655555544446654 699999999975 55 7888884
Q ss_pred CCCCeEEEEeCCccc-cC---CCCCCCCCChhHHHHHHHH
Q psy9502 395 DDLPVLRLDDYKHIY-RL---PSLITLAENPSTLVSIVED 430 (493)
Q Consensus 395 ~~~P~ivi~~~~~~y-~~---~~~~~~~~~~~~l~~Fi~d 430 (493)
.+|++++...+... .+ .....+.++.+.|..|+..
T Consensus 135 -~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 -ALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred -CCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 79999887765321 11 1102235667888888765
No 260
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.14 E-value=0.0093 Score=45.21 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=41.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc----ccccCccccCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR----IRDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Ptl~~f~~g~~ 206 (493)
++.|+.+||++|++....+++. +|.+-.+|+.+++. +.+..+-..+|++ |.+|+.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~ 61 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKL 61 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 5679999999999998888863 67888889988764 4444466778987 456653
No 261
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=96.10 E-value=0.0015 Score=55.97 Aligned_cols=31 Identities=3% Similarity=-0.174 Sum_probs=26.5
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.++.++|.|||+| |++|+.++|.+++..+.+
T Consensus 16 ~Gk~vll~F~atw-----C~~C~~~~p~l~~l~~~~ 46 (132)
T cd02964 16 EGKTVGLYFSASW-----CPPCRAFTPKLVEFYEKL 46 (132)
T ss_pred CCCEEEEEEECCC-----CchHHHHHHHHHHHHHHH
Confidence 5789999999999 999999999987754433
No 262
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=96.06 E-value=0.0011 Score=58.32 Aligned_cols=33 Identities=3% Similarity=-0.045 Sum_probs=27.9
Q ss_pred EEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 10 VEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 10 ~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
..+..+++.+|.|||+| |++|+..+|.+++..+
T Consensus 45 ~~~~l~~~~lvnFWAsW-----CppCr~e~P~L~~l~~ 77 (153)
T TIGR02738 45 RHANQDDYALVFFYQST-----CPYCHQFAPVLKRFSQ 77 (153)
T ss_pred hhhhcCCCEEEEEECCC-----ChhHHHHHHHHHHHHH
Confidence 44566788899999999 9999999999987643
No 263
>KOG2640|consensus
Probab=96.04 E-value=0.0025 Score=60.92 Aligned_cols=93 Identities=18% Similarity=0.432 Sum_probs=72.4
Q ss_pred HHHHcC--CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEE-eCCCCccccccCccccCceEEEEeCC
Q psy9502 128 TEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI-NCDEEPRIRDFFHITKYPTLKIIRNG 204 (493)
Q Consensus 128 ~~~l~~--~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~v-d~~~~~~l~~~~~i~~~Ptl~~f~~g 204 (493)
.+++.. ..++-+.||+.||++.+...|.|+-....+. .|....| +...-+.+..+|++.+.|++.+....
T Consensus 68 ~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~-------~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t 140 (319)
T KOG2640|consen 68 LDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFS-------SIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT 140 (319)
T ss_pred HHhhccccCCcccccchhcccCcccccCcccchhhhhcc-------ccccccHHHHhhcccchhccccccCCcceeeccc
Confidence 344444 5688899999999999999999999888773 2333333 22334678899999999999988765
Q ss_pred eeeeeecccCCCHHHHHHHHHHHcC
Q psy9502 205 LATRSEYRSQRTTEALLNFIAEELK 229 (493)
Q Consensus 205 ~~~~~~y~G~~~~~~l~~fi~~~~~ 229 (493)
-.. .|.|.++..+|++|..+.+.
T Consensus 141 ~~~--~~~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 141 CPA--SYRGERDLASLVNFYTEITP 163 (319)
T ss_pred cch--hhcccccHHHHHHHHHhhcc
Confidence 544 69999999999999998765
No 264
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.04 E-value=0.01 Score=45.05 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=40.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccc----cCccc-cCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD----FFHIT-KYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~-~~Ptl~~f~~g~~ 206 (493)
++.|..+||++|.+.+..+.+. ++.+-.+|.+.+++..+ ..+.. .+|++ |.+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEE
Confidence 5678999999999988888752 67788888887654433 34555 88987 456654
No 265
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.95 E-value=0.11 Score=44.90 Aligned_cols=104 Identities=16% Similarity=0.122 Sum_probs=67.1
Q ss_pred hhcHHHHH--hcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC
Q psy9502 328 YENAEEIS--EEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY 405 (493)
Q Consensus 328 ~~n~~~l~--~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~ 405 (493)
.+.+.+.. ++++++++-|+..+| ..++.+...+.+.++++.+...|+.+|.++.+.. ...+++. ...|++.+...
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WC-gpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dl-a~~y~I~-~~~t~~~ffk~ 87 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWD-ETCMQMDEVLASVAETIKNFAVIYLVDITEVPDF-NTMYELY-DPCTVMFFFRN 87 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCC-hhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHH-HHHcCcc-CCCcEEEEEEC
Confidence 34445544 356789999999998 5566666555554467777899999999999999 9999996 33456646666
Q ss_pred Ccc-ccCCCCCC-----CCCChhHHHHHHHHHHcC
Q psy9502 406 KHI-YRLPSLIT-----LAENPSTLVSIVEDYFSG 434 (493)
Q Consensus 406 ~~~-y~~~~~~~-----~~~~~~~l~~Fi~d~~sG 434 (493)
+++ -..-.+.. -..+.+.|.+-++.++.|
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 552 22111000 034566666666666554
No 266
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=95.93 E-value=0.069 Score=52.06 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=71.2
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCC--CcchHHH------HHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCC
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHG--DLTSVAI------FKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSS 394 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~--d~~~~~~------~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~ 394 (493)
|..||..|+...+..-.-++|+|+.+. +....++ +++.+++++.. + .+.|+.+|..+-... .+.+|+.
T Consensus 36 Vi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~-~-gigfg~VD~~Kd~kl-AKKLgv~- 111 (383)
T PF01216_consen 36 VIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLED-K-GIGFGMVDSKKDAKL-AKKLGVE- 111 (383)
T ss_dssp CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGG-C-TEEEEEEETTTTHHH-HHHHT---
T ss_pred eEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccc-c-CcceEEeccHHHHHH-HHhcCcc-
Confidence 889999999999988777888888754 3222222 44555655532 3 499999999998888 9999997
Q ss_pred CCCCeEEEEeCCccccCCCCCCCCCChhHHHHHHHHHHcC
Q psy9502 395 DDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSG 434 (493)
Q Consensus 395 ~~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~sG 434 (493)
..+.|-+...+++.-| .+..+++.|..||.++..-
T Consensus 112 -E~~SiyVfkd~~~IEy----dG~~saDtLVeFl~dl~ed 146 (383)
T PF01216_consen 112 -EEGSIYVFKDGEVIEY----DGERSADTLVEFLLDLLED 146 (383)
T ss_dssp -STTEEEEEETTEEEEE-----S--SHHHHHHHHHHHHSS
T ss_pred -ccCcEEEEECCcEEEe----cCccCHHHHHHHHHHhccc
Confidence 4677777777766665 4567899999999998864
No 267
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.93 E-value=0.011 Score=45.89 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=58.3
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeee-eeecccCCC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLAT-RSEYRSQRT 216 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~-~~~y~G~~~ 216 (493)
++.|..+.|+-|......+.+++... .+.+-.||.++++.+..+|+. ..|.+.+=..+... ...-.+..+
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~--------~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d 72 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF--------PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFD 72 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS--------TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc--------CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCC
Confidence 67899999999999998888865433 699999999999999999995 68997653311111 123567788
Q ss_pred HHHHHHHHH
Q psy9502 217 TEALLNFIA 225 (493)
Q Consensus 217 ~~~l~~fi~ 225 (493)
.+.|.+|++
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 899998874
No 268
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.84 E-value=0.0022 Score=51.27 Aligned_cols=31 Identities=13% Similarity=-0.092 Sum_probs=25.7
Q ss_pred cceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 15 VEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 15 ~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
++++++.|||+| |++|+...|.+.++.+.+.
T Consensus 1 gK~~ll~fwa~~-----c~~c~~~~~~l~~l~~~~~ 31 (95)
T PF13905_consen 1 GKPVLLYFWASW-----CPPCKKELPKLKELYKKYK 31 (95)
T ss_dssp TSEEEEEEE-TT-----SHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEECCC-----CHHHHHHHHHHHHHHHHhC
Confidence 578999999999 9999999999988655544
No 269
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.82 E-value=0.021 Score=46.04 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=43.0
Q ss_pred HHHHHcCCCeEEEEEE---cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccc----ccCccccCceEE
Q psy9502 127 FTEVLSQYKLAVVNFY---ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR----DFFHITKYPTLK 199 (493)
Q Consensus 127 f~~~l~~~~~~lV~Fy---a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Ptl~ 199 (493)
..+++++++.++..=. +|||++|++....+.+. +|.+..+|..+++.+. +..+...+|.+
T Consensus 5 v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~------------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~v- 71 (97)
T TIGR00365 5 IKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC------------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQL- 71 (97)
T ss_pred HHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc------------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEE-
Confidence 4456665554333212 38999999999888774 5777888887765433 33455678887
Q ss_pred EEeCCee
Q psy9502 200 IIRNGLA 206 (493)
Q Consensus 200 ~f~~g~~ 206 (493)
|.+|+.
T Consensus 72 -fi~g~~ 77 (97)
T TIGR00365 72 -YVKGEF 77 (97)
T ss_pred -EECCEE
Confidence 456653
No 270
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=95.77 E-value=0.0026 Score=54.32 Aligned_cols=38 Identities=5% Similarity=-0.114 Sum_probs=29.1
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDW 48 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~ 48 (493)
..+++-.+ .+++++|.||++| |++|+.++|.+.++.+.
T Consensus 9 ~~v~l~~~-~gk~vll~Fwa~w-----C~~C~~~~p~l~~~~~~ 46 (131)
T cd03009 9 GKVPVSSL-EGKTVGLYFSASW-----CPPCRAFTPKLVEFYEK 46 (131)
T ss_pred CCccHHHh-CCcEEEEEEECCC-----ChHHHHHhHHHHHHHHH
Confidence 33444443 4789999999999 99999999998775433
No 271
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=95.76 E-value=0.0027 Score=55.20 Aligned_cols=28 Identities=4% Similarity=-0.062 Sum_probs=25.3
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCch
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLE 46 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~ 46 (493)
.+++++|.|||+| |+.|+..+|.+.+..
T Consensus 24 kgk~vlL~FwAsW-----CppCr~e~P~L~~ly 51 (146)
T cd03008 24 ENRVLLLFFGAVV-----SPQCQLFAPKLKDFF 51 (146)
T ss_pred CCCEEEEEEECCC-----ChhHHHHHHHHHHHH
Confidence 5789999999999 999999999998743
No 272
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=95.74 E-value=0.0027 Score=53.87 Aligned_cols=27 Identities=4% Similarity=-0.196 Sum_probs=24.3
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
.+++++|.|||+| |++|+.++|.+++.
T Consensus 24 ~gk~vvv~F~a~~-----C~~C~~~~~~l~~l 50 (127)
T cd03010 24 KGKPYLLNVWASW-----CAPCREEHPVLMAL 50 (127)
T ss_pred CCCEEEEEEEcCc-----CHHHHHHHHHHHHH
Confidence 4789999999999 99999999998764
No 273
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=95.70 E-value=0.099 Score=44.08 Aligned_cols=104 Identities=9% Similarity=0.017 Sum_probs=68.1
Q ss_pred CceeecChhcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCc---------ccchhhhhccC
Q psy9502 321 PLVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDL---------FYQRIFYHHLH 391 (493)
Q Consensus 321 P~v~elt~~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~---------~~~~~~l~~lg 391 (493)
..+.++|.+.+.+...++..+++.|..++| ..++.+...+.+.+++.+..+.++-+|.. .+..+ .+.++
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~C-p~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~-~~~~~ 83 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTC-PYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAF-RSRFG 83 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCC-hhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHH-HHHcC
Confidence 346678999999999999999999999988 56777776666555443434555555432 11233 45566
Q ss_pred CC--CCCCCeEEEEeCCc-cccCCCCCCCCCChhHHHHHHH
Q psy9502 392 LS--SDDLPVLRLDDYKH-IYRLPSLITLAENPSTLVSIVE 429 (493)
Q Consensus 392 i~--~~~~P~ivi~~~~~-~y~~~~~~~~~~~~~~l~~Fi~ 429 (493)
+. ....|.+++...++ .-+.. ....+.+.|++|+.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~---G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRC---GSSTTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEe---CCCCCHHHHHHHhh
Confidence 43 24599998887763 33322 23456889999875
No 274
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.48 E-value=0.036 Score=43.80 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=42.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc--------------------------------c
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP--------------------------------R 185 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~--------------------------------~ 185 (493)
++.|+.+.|++|..+.+.+.++.... .+++.+..+...-.. .
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYAD------DGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTA 74 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhc------CCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 36799999999999999999987433 346666655443221 2
Q ss_pred ccccCccccCceEEEEe
Q psy9502 186 IRDFFHITKYPTLKIIR 202 (493)
Q Consensus 186 l~~~~~i~~~Ptl~~f~ 202 (493)
+..+.|+.+.||+++..
T Consensus 75 ~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 75 LARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHcCCCCCCEEEECC
Confidence 45677899999997754
No 275
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=95.45 E-value=0.0043 Score=65.02 Aligned_cols=35 Identities=9% Similarity=-0.188 Sum_probs=29.4
Q ss_pred EEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 10 VEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 10 ~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.+..+++|+|.|||+| |++|+.++|.++++.+.+
T Consensus 51 v~lskGKpVvV~FWATW-----CppCk~emP~L~eL~~e~ 85 (521)
T PRK14018 51 VYLKKDKPTLIKFWASW-----CPLCLSELGETEKWAQDA 85 (521)
T ss_pred eeccCCCEEEEEEEcCC-----CHHHHHHHHHHHHHHHHh
Confidence 34458899999999999 999999999998865443
No 276
>KOG3170|consensus
Probab=95.41 E-value=0.15 Score=45.77 Aligned_cols=109 Identities=18% Similarity=0.262 Sum_probs=78.1
Q ss_pred CCcEEcccccHHHHH--cCCC-eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc
Q psy9502 117 TRVKYLRQNNFTEVL--SQYK-LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT 193 (493)
Q Consensus 117 ~~v~~l~~~nf~~~l--~~~~-~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~ 193 (493)
+.|..+++..|.+-+ .+.+ .|+|..|...-+-|.-+...+.++|.++ ..+.|+++-.+.. ...|.=.
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf-------p~iKFVki~at~c---IpNYPe~ 160 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF-------PQIKFVKIPATTC---IPNYPES 160 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC-------CcceEEecccccc---cCCCccc
Confidence 679999999987743 4444 5566789999999999999999999998 4788988865442 2345556
Q ss_pred cCceEEEEeCCeeee-----eecccCC-CHHHHHHHHHHHcCCCcccCC
Q psy9502 194 KYPTLKIIRNGLATR-----SEYRSQR-TTEALLNFIAEELKDPVMDLE 236 (493)
Q Consensus 194 ~~Ptl~~f~~g~~~~-----~~y~G~~-~~~~l~~fi~~~~~~~~~~i~ 236 (493)
..|||++|..|.... ..+.|.+ +.+++..++.+ .++.+.+..
T Consensus 161 nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q-aga~l~d~~ 208 (240)
T KOG3170|consen 161 NLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ-AGAALTDGD 208 (240)
T ss_pred CCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh-ccccccccc
Confidence 789999999886533 3455554 56666555554 555555554
No 277
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.36 E-value=0.14 Score=39.28 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=56.1
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCccccCCCCCCCCCCh
Q psy9502 342 LILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENP 421 (493)
Q Consensus 342 lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~~y~~~~~~~~~~~~ 421 (493)
+.+|+.+++ ..++.....+.+.+.++...+.+..+|..+.+.. .+.+|+. ..|.+++ +.+ ..+ .+...+
T Consensus 3 v~~f~~~~C-~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~vPt~~~-~g~--~~~----~G~~~~ 71 (82)
T TIGR00411 3 IELFTSPTC-PYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK-AMEYGIM--AVPAIVI-NGD--VEF----IGAPTK 71 (82)
T ss_pred EEEEECCCC-cchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH-HHHcCCc--cCCEEEE-CCE--EEE----ecCCCH
Confidence 567888887 5566666666555456667799999999988888 8889985 6899987 322 232 234467
Q ss_pred hHHHHHHHHH
Q psy9502 422 STLVSIVEDY 431 (493)
Q Consensus 422 ~~l~~Fi~d~ 431 (493)
+.+.++|+..
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 8888888764
No 278
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=95.33 E-value=0.029 Score=47.40 Aligned_cols=28 Identities=0% Similarity=-0.233 Sum_probs=23.7
Q ss_pred EeecceeeeehhHHHHHHHhhhhhhhhhhh-ccC
Q psy9502 12 VESVEWVNRKTYSVIALVLANRESKILLRA-AQG 44 (493)
Q Consensus 12 ~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~-~~~ 44 (493)
..++++++|.|||+| |+.|+.|.+. +.+
T Consensus 12 k~~~KpVll~f~a~W-----C~~Ck~me~~~f~~ 40 (124)
T cd02955 12 RREDKPIFLSIGYST-----CHWCHVMEHESFED 40 (124)
T ss_pred HHcCCeEEEEEccCC-----CHhHHHHHHHccCC
Confidence 357899999999999 9999999874 444
No 279
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=95.32 E-value=0.017 Score=62.05 Aligned_cols=35 Identities=11% Similarity=-0.130 Sum_probs=25.8
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE 53 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~ 53 (493)
.+++|+|+|||+| |++||.+.|..-...+..+.++
T Consensus 473 ~gK~VlVdF~A~W-----C~~Ck~~e~~~~~~~~v~~~l~ 507 (571)
T PRK00293 473 KGKPVMLDLYADW-----CVACKEFEKYTFSDPQVQQALA 507 (571)
T ss_pred cCCcEEEEEECCc-----CHhHHHHHHHhcCCHHHHHHhc
Confidence 3689999999999 9999999987533334444433
No 280
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=95.29 E-value=0.009 Score=46.45 Aligned_cols=34 Identities=15% Similarity=-0.187 Sum_probs=28.5
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
..+++++|.|+|+| |++|+.|....-...+....
T Consensus 15 ~~~kpvlv~f~a~w-----C~~C~~l~~~~~~~~~v~~~ 48 (82)
T PF13899_consen 15 KEGKPVLVDFGADW-----CPPCKKLEREVFSDPEVQEA 48 (82)
T ss_dssp HHTSEEEEEEETTT-----THHHHHHHHHTTTSHHHHHH
T ss_pred HcCCCEEEEEECCC-----CHhHHHHHHHHcCCHHHHHH
Confidence 56899999999999 99999999888665556553
No 281
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=95.01 E-value=0.0056 Score=55.81 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=24.8
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
..+++++|.|||+| |++|+..+|.+.+.
T Consensus 66 ~~gk~vvv~Fwatw-----C~~C~~e~p~l~~l 93 (185)
T PRK15412 66 TQGKPVLLNVWATW-----CPTCRAEHQYLNQL 93 (185)
T ss_pred cCCCEEEEEEECCC-----CHHHHHHHHHHHHH
Confidence 36889999999999 99999999988553
No 282
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=94.96 E-value=0.51 Score=40.17 Aligned_cols=112 Identities=8% Similarity=-0.002 Sum_probs=71.0
Q ss_pred HHHHHHHhcCCceeecChhcHHHHHhcCCcEEEEEEeCCC---cch--HHHHHHHHHHHhhhcC-CcEEEEEEeCcccch
Q psy9502 311 LVQWFTEKCVPLVREITYENAEEISEEGRPLLILCHRHGD---LTS--VAIFKRIVRDTIGQYA-QNLSFVTADDLFYQR 384 (493)
Q Consensus 311 l~~wi~~~~~P~v~elt~~n~~~l~~~~~p~lilf~~~~d---~~~--~~~~~~~~~~~~~~~~-~~i~f~~~d~~~~~~ 384 (493)
|.+=+..+.+|.|.+ .++......+...++ |...+- .+. +...+..++ ++|. +++.|+.+|.+..+.
T Consensus 10 l~~rl~~~g~~~~~~---~~~~~~~~~~~~~vl-~~~gdp~r~~E~~D~avvleELa---~e~~~~~v~~akVDiD~~~~ 82 (132)
T PRK11509 10 LWQRMLARGWTPVSE---SRLDDWLTQAPDGVV-LLSSDPKRTPEVSDNPVMIGELL---REFPDYTWQVAIADLEQSEA 82 (132)
T ss_pred HHHHHHHcCCCcccc---ccHHHHHhCCCcEEE-EeCCCCCcCCccccHHHHHHHHH---HHhcCCceEEEEEECCCCHH
Confidence 333344456666655 666666655444444 443221 121 122223333 6766 459999999999999
Q ss_pred hhhhccCCCCCCCCeEEEEeCCccccCCCCCCCCCChhHHHHHHHHHHcCC
Q psy9502 385 IFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 385 ~~l~~lgi~~~~~P~ivi~~~~~~y~~~~~~~~~~~~~~l~~Fi~d~~sGk 435 (493)
. ...+|+. ..|.+++...++.-- . ..+....+.+.+||+.+++--
T Consensus 83 L-A~~fgV~--siPTLl~FkdGk~v~-~--i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 83 I-GDRFGVF--RFPATLVFTGGNYRG-V--LNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred H-HHHcCCc--cCCEEEEEECCEEEE-E--EeCcCCHHHHHHHHHHHhcCc
Confidence 9 9999995 799999887764321 1 234566789999999988754
No 283
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.85 E-value=0.064 Score=42.51 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=35.8
Q ss_pred CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccc----cccCccccCceEEEEeCCee
Q psy9502 144 DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRI----RDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 144 ~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Ptl~~f~~g~~ 206 (493)
|||++|++.+..+++. ++.+..+|..+++++ .+..+-..+|+| |.+|..
T Consensus 21 ~~Cp~C~~ak~~L~~~------------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~ 73 (90)
T cd03028 21 PRCGFSRKVVQILNQL------------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGEL 73 (90)
T ss_pred CCCcHHHHHHHHHHHc------------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEE
Confidence 7999999988888764 577888888776543 333466788997 556764
No 284
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=94.82 E-value=0.0071 Score=54.47 Aligned_cols=27 Identities=4% Similarity=-0.225 Sum_probs=24.1
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
..+++++|.||++| |++|+.++|.+++
T Consensus 61 ~~gk~vll~F~a~w-----C~~C~~~~p~l~~ 87 (173)
T TIGR00385 61 IQGKPVLLNVWASW-----CPPCRAEHPYLNE 87 (173)
T ss_pred cCCCEEEEEEECCc-----CHHHHHHHHHHHH
Confidence 35789999999999 9999999998754
No 285
>PRK10638 glutaredoxin 3; Provisional
Probab=94.82 E-value=0.049 Score=42.41 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccc----cccCccccCceEEEEeCCee
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRI----RDFFHITKYPTLKIIRNGLA 206 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Ptl~~f~~g~~ 206 (493)
++.|..+||++|++....+++. ++.+..+|++.+++. .+..+...+|++ |.+|..
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEE
Confidence 5578889999999998888863 577788888876533 333466778987 346653
No 286
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=94.79 E-value=0.0065 Score=58.81 Aligned_cols=31 Identities=10% Similarity=-0.132 Sum_probs=26.7
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
++++++|.|||+| |++|+.++|.+++..+.+
T Consensus 165 ~~k~~Lv~F~Asw-----Cp~C~~~~P~L~~la~~y 195 (271)
T TIGR02740 165 AKKSGLFFFFKSD-----CPYCHQQAPILQAFEDRY 195 (271)
T ss_pred cCCeEEEEEECCC-----CccHHHHhHHHHHHHHHc
Confidence 4789999999999 999999999998765443
No 287
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=94.74 E-value=0.2 Score=41.18 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=64.5
Q ss_pred EEc-ccccHHHHHcCC-CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCce
Q psy9502 120 KYL-RQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197 (493)
Q Consensus 120 ~~l-~~~nf~~~l~~~-~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 197 (493)
..+ +.++++.++..+ +.++|-|+..--. .....|.++|+.++ ....|+... +..+.+++++. .|.
T Consensus 3 ~~i~s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~R------dd~~F~~t~---~~~~~~~~~~~-~~~ 69 (107)
T cd03068 3 KQLQTLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLR------EDYKFHHTF---DSEIFKSLKVS-PGQ 69 (107)
T ss_pred eEcCCHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcc------cCCEEEEEC---hHHHHHhcCCC-CCc
Confidence 445 345677777666 7888888876432 46778999999984 467787654 34566777776 588
Q ss_pred EEEEeCCeee------eeecccC-CCHHH-HHHHHHHH
Q psy9502 198 LKIIRNGLAT------RSEYRSQ-RTTEA-LLNFIAEE 227 (493)
Q Consensus 198 l~~f~~g~~~------~~~y~G~-~~~~~-l~~fi~~~ 227 (493)
+++|++.... ...|.|. .+.++ |..|++.+
T Consensus 70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 70 LVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred eEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 9899543322 2458887 56666 99999763
No 288
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.71 E-value=0.014 Score=49.44 Aligned_cols=36 Identities=14% Similarity=-0.088 Sum_probs=29.7
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE 53 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~ 53 (493)
..+++++|.||+.| |++|+.|....-+..++.+.+.
T Consensus 21 ~~~Kpvmv~f~sdw-----C~~Ck~l~k~~f~~~eV~~~l~ 56 (130)
T cd02960 21 KSNKPLMVIHHLED-----CPHSQALKKAFAEHKEIQKLAQ 56 (130)
T ss_pred HCCCeEEEEEeCCc-----CHhHHHHHHHhhCCHHHHHHHH
Confidence 56899999999999 9999999997655566666654
No 289
>KOG3171|consensus
Probab=94.70 E-value=0.15 Score=46.21 Aligned_cols=110 Identities=23% Similarity=0.243 Sum_probs=85.1
Q ss_pred CCCcEEccc-ccHHHHHcCC---CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc
Q psy9502 116 TTRVKYLRQ-NNFTEVLSQY---KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH 191 (493)
Q Consensus 116 ~~~v~~l~~-~nf~~~l~~~---~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 191 (493)
-+.|++|+. +.|.+.|+.. -.++|..|-+.-+-|..+...+.=+|..+ +.+.|.++-.+. -....+|.
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-------P~vKFckikss~-~gas~~F~ 208 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-------PIVKFCKIKSSN-TGASDRFS 208 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-------CceeEEEeeecc-ccchhhhc
Confidence 367898875 7898888654 36778899999999999999988888776 489999997664 46678999
Q ss_pred cccCceEEEEeCCeeeeeec-------ccCCCHHHHHHHHHHHcCCCccc
Q psy9502 192 ITKYPTLKIIRNGLATRSEY-------RSQRTTEALLNFIAEELKDPVMD 234 (493)
Q Consensus 192 i~~~Ptl~~f~~g~~~~~~y-------~G~~~~~~l~~fi~~~~~~~~~~ 234 (493)
.+..|++.+|++|..+. .| -......+|..|++.+--.+-.+
T Consensus 209 ~n~lP~LliYkgGeLIg-NFv~va~qlgedffa~dle~FL~e~gllpe~e 257 (273)
T KOG3171|consen 209 LNVLPTLLIYKGGELIG-NFVSVAEQLGEDFFAGDLESFLNEYGLLPERE 257 (273)
T ss_pred ccCCceEEEeeCCchhH-HHHHHHHHHhhhhhhhhHHHHHHHcCCCcccc
Confidence 99999999999998754 22 12356678888888876555443
No 290
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.62 E-value=0.14 Score=49.00 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe----------------------------------
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN---------------------------------- 179 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd---------------------------------- 179 (493)
.+.+++.|..+.|++|+++.+...++.+. ++|.+-.+-
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 46788899999999999998886654321 122221110
Q ss_pred ------------CC----CCccccccCccccCceEEEEeC-CeeeeeecccCCCHHHHHHHHH
Q psy9502 180 ------------CD----EEPRIRDFFHITKYPTLKIIRN-GLATRSEYRSQRTTEALLNFIA 225 (493)
Q Consensus 180 ------------~~----~~~~l~~~~~i~~~Ptl~~f~~-g~~~~~~y~G~~~~~~l~~fi~ 225 (493)
|. +|..+.+++||++.|++++-.. |... ...|-.+.++|.+.+.
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~--~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ--QVVGLPDPAQLAEIMG 249 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE--EecCCCCHHHHHHHhC
Confidence 00 1224667789999999977653 4322 3678888888887764
No 291
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.064 Score=41.50 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=38.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-----cccccC-ccccCceEEEEeCCe
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-----RIRDFF-HITKYPTLKIIRNGL 205 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Ptl~~f~~g~ 205 (493)
++.|..+||++|++.+..+.+. ++.+..++.+.++ +..++- |.+.+|+|+ .+|+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~------------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~--i~~~ 62 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK------------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIF--IGGK 62 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc------------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEE--ECCE
Confidence 5678899999999988887742 6777777777665 223333 678899975 4554
No 292
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=94.45 E-value=0.013 Score=47.88 Aligned_cols=38 Identities=11% Similarity=0.037 Sum_probs=28.7
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDW 48 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~ 48 (493)
..+.+-.. .++++++.||++| |++|+..+|.+.+..+.
T Consensus 10 ~~~~~~~~-~~k~~ll~f~~~~-----C~~C~~~~~~l~~~~~~ 47 (116)
T cd02966 10 KPVSLSDL-KGKVVLVNFWASW-----CPPCRAEMPELEALAKE 47 (116)
T ss_pred CEeehHHc-CCCEEEEEeeccc-----ChhHHHHhHHHHHHHHH
Confidence 34444443 3789999999999 99999999888775433
No 293
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=94.43 E-value=0.0063 Score=51.17 Aligned_cols=36 Identities=11% Similarity=-0.019 Sum_probs=28.1
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCch
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLE 46 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~ 46 (493)
++++.... .++.++|.||++| |++|+.++|.+.+..
T Consensus 11 ~~~~~~~~-~~k~~vl~F~~~~-----C~~C~~~~~~l~~~~ 46 (123)
T cd03011 11 EQFDLESL-SGKPVLVYFWATW-----CPVCRFTSPTVNQLA 46 (123)
T ss_pred CEeeHHHh-CCCEEEEEEECCc-----ChhhhhhChHHHHHH
Confidence 44444443 4589999999999 999999999997643
No 294
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=94.32 E-value=0.013 Score=53.50 Aligned_cols=37 Identities=5% Similarity=-0.114 Sum_probs=28.5
Q ss_pred cceeEEEE-EeecceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 4 KTHVKLVE-VESVEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 4 ~~~~~~~~-~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
.+.++... ...+++++|.|||+| |++|+...|.+.+.
T Consensus 62 G~~v~l~~~~~~gk~vvl~F~atw-----Cp~C~~~lp~l~~~ 99 (189)
T TIGR02661 62 GEPVRIGGSIAPGRPTLLMFTAPS-----CPVCDKLFPIIKSI 99 (189)
T ss_pred CCEEeccchhcCCCEEEEEEECCC-----ChhHHHHHHHHHHH
Confidence 34455432 246789999999999 99999999988763
No 295
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.29 E-value=0.57 Score=43.79 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=43.8
Q ss_pred CCCCcEEccccc---HHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhh
Q psy9502 115 NTTRVKYLRQNN---FTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165 (493)
Q Consensus 115 ~~~~v~~l~~~n---f~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~ 165 (493)
.++.|+.+++.+ +-+..+++++.+++|-+--|++-..-.+.|.++++++.+
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 356799999877 556668899999999999999999999999999999865
No 296
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.21 E-value=0.099 Score=45.41 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHH
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIV 163 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~ 163 (493)
.+..++.|+.++|+||+++.|.+.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 468899999999999999999988876543
No 297
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.51 E-value=0.02 Score=46.53 Aligned_cols=31 Identities=6% Similarity=-0.101 Sum_probs=26.0
Q ss_pred cceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 15 VEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 15 ~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
++.+++.||++| |++|+.++|.+.+..+.+.
T Consensus 32 ~~~~~v~f~~~~-----C~~C~~~~~~l~~~~~~~~ 62 (127)
T COG0526 32 GKPVLVDFWAPW-----CPPCRAEAPLLEELAEEYG 62 (127)
T ss_pred CceEEEEEEcCc-----CHHHHhhchhHHHHHHHhc
Confidence 778899999999 9999999999877654443
No 298
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=93.46 E-value=0.012 Score=51.08 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=29.7
Q ss_pred eeEEEEEeecceeeeehhHH-HHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 6 HVKLVEVESVEWVNRKTYSV-IALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fyap-~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
.+++-. -.+++++|.||+. | |++|+..+|.+.++.+.+..
T Consensus 20 ~~~l~~-~~gk~~vv~f~~~~~-----Cp~C~~~~p~l~~l~~~~~~ 60 (146)
T PF08534_consen 20 PVSLSD-FKGKPVVVNFWASAW-----CPPCRKELPYLNELQEKYKD 60 (146)
T ss_dssp EEEGGG-GTTSEEEEEEESTTT-----SHHHHHHHHHHHHHHHHHHT
T ss_pred EecHHH-hCCCeEEEEEEccCC-----CCcchhhhhhHHhhhhhhcc
Confidence 333333 4578999999999 9 99999999977776444433
No 299
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=93.38 E-value=0.019 Score=47.26 Aligned_cols=31 Identities=10% Similarity=-0.251 Sum_probs=23.6
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHH
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDW 48 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~ 48 (493)
..++++++.|++|| |++|+.+.+......+.
T Consensus 3 ~~~k~~v~~F~~~~-----C~~C~~~~~~~~~~~~~ 33 (112)
T PF13098_consen 3 GNGKPIVVVFTDPW-----CPYCKKLEKELFPDNDV 33 (112)
T ss_dssp TTSSEEEEEEE-TT------HHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCC-----CHHHHHHHHHHHHHHHH
Confidence 46789999999999 99999999887654443
No 300
>PRK10824 glutaredoxin-4; Provisional
Probab=93.31 E-value=0.13 Score=42.73 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=39.7
Q ss_pred HHHHHcCCCeEEEEEEc-----CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccC----ccccCce
Q psy9502 127 FTEVLSQYKLAVVNFYA-----DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF----HITKYPT 197 (493)
Q Consensus 127 f~~~l~~~~~~lV~Fya-----~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~----~i~~~Pt 197 (493)
.++++++++.++ |-. |||++|++....+.++ ++.+..+|..+++++...+ +...+|.
T Consensus 8 v~~~I~~~~Vvv--f~Kg~~~~p~Cpyc~~ak~lL~~~------------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQ 73 (115)
T PRK10824 8 IQRQIAENPILL--YMKGSPKLPSCGFSAQAVQALSAC------------GERFAYVDILQNPDIRAELPKYANWPTFPQ 73 (115)
T ss_pred HHHHHhcCCEEE--EECCCCCCCCCchHHHHHHHHHHc------------CCCceEEEecCCHHHHHHHHHHhCCCCCCe
Confidence 455666555433 333 6999999999888775 3455566776665543332 3445666
Q ss_pred EEEEeCCeee
Q psy9502 198 LKIIRNGLAT 207 (493)
Q Consensus 198 l~~f~~g~~~ 207 (493)
| |-+|+.+
T Consensus 74 I--FI~G~~I 81 (115)
T PRK10824 74 L--WVDGELV 81 (115)
T ss_pred E--EECCEEE
Confidence 4 5677643
No 301
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=93.28 E-value=0.02 Score=51.52 Aligned_cols=25 Identities=4% Similarity=-0.288 Sum_probs=21.3
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccCchHH
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQGLEDW 48 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~ 48 (493)
+|-||+.| |++|++.+|.+.+..+.
T Consensus 73 lV~Fwasw-----Cp~C~~e~P~L~~l~~~ 97 (181)
T PRK13728 73 VVLFMQGH-----CPYCHQFDPVLKQLAQQ 97 (181)
T ss_pred EEEEECCC-----CHhHHHHHHHHHHHHHH
Confidence 67799999 99999999999875433
No 302
>KOG0913|consensus
Probab=93.10 E-value=0.02 Score=52.67 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=25.5
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
++.| +++|+||| |+.|+.++|+|+..+..-..
T Consensus 39 ~gew-mi~~~ap~-----~psc~~~~~~~~~~a~~s~d 70 (248)
T KOG0913|consen 39 TGEW-MIEFGAPW-----CPSCSDLIPHLENFATVSLD 70 (248)
T ss_pred chHH-HHHhcCCC-----CccccchHHHHhccCCccCC
Confidence 3444 49999999 99999999999886655444
No 303
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=93.02 E-value=0.022 Score=48.20 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=28.7
Q ss_pred eeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 6 HVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
.+++-.. .+++++|.||+.| |+.|+..+|.+.++.+
T Consensus 15 ~v~l~~~-~gk~vvl~F~a~~-----C~~C~~~~p~l~~l~~ 50 (126)
T cd03012 15 PLSLAQL-RGKVVLLDFWTYC-----CINCLHTLPYLTDLEQ 50 (126)
T ss_pred ccCHHHh-CCCEEEEEEECCC-----CccHHHHHHHHHHHHH
Confidence 4444444 5789999999999 9999999999977543
No 304
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.00 E-value=0.22 Score=52.24 Aligned_cols=22 Identities=14% Similarity=-0.153 Sum_probs=19.8
Q ss_pred ceeeeehhHHHHHHHhhhhhhhhhhhc
Q psy9502 16 EWVNRKTYSVIALVLANRESKILLRAA 42 (493)
Q Consensus 16 ~~~~v~Fyap~~~~~~C~hCk~l~p~~ 42 (493)
++|+|+|||+| |..||.+.+.-
T Consensus 475 ~pVmlDfyAdW-----CvtCK~~e~~t 496 (569)
T COG4232 475 KPVMLDFYADW-----CVTCKENEKYT 496 (569)
T ss_pred CcEEEeeehhH-----HHHhHhhhhhc
Confidence 59999999999 99999998843
No 305
>PTZ00056 glutathione peroxidase; Provisional
Probab=92.78 E-value=0.1 Score=48.16 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
..+++-.. .+++++|.|||.| |+.|+..+|.+.+..+.+.
T Consensus 30 ~~vsL~~~-kGkvvlv~fwAsw-----C~~C~~e~p~L~~l~~~~~ 69 (199)
T PTZ00056 30 TTVPMSSL-KNKVLMITNSASK-----CGLTKKHVDQMNRLHSVFN 69 (199)
T ss_pred CEEeHHHh-CCCEEEEEEECCC-----CCChHHHHHHHHHHHHHHh
Confidence 34444443 4789999999999 9999999999987654443
No 306
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=92.45 E-value=0.023 Score=49.92 Aligned_cols=30 Identities=3% Similarity=-0.160 Sum_probs=24.9
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.+++++|.|||.| |+ |+..+|.+.++.+.+
T Consensus 21 ~Gk~vvl~fwatw-----C~-C~~e~p~l~~l~~~~ 50 (152)
T cd00340 21 KGKVLLIVNVASK-----CG-FTPQYEGLEALYEKY 50 (152)
T ss_pred CCCEEEEEEEcCC-----CC-chHHHHHHHHHHHHh
Confidence 4789999999999 99 999999887654433
No 307
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=92.32 E-value=0.03 Score=50.11 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=28.2
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
+.+++-.. .+++++|.||++| |++|+...|.+.+..+
T Consensus 52 ~~~~l~~~-~~k~~~l~f~a~~-----C~~C~~~~~~l~~~~~ 88 (173)
T PRK03147 52 KKIELKDL-KGKGVFLNFWGTW-----CKPCEKEMPYMNELYP 88 (173)
T ss_pred CEEeHHHc-CCCEEEEEEECCc-----CHHHHHHHHHHHHHHH
Confidence 34443332 4688999999999 9999999999877543
No 308
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.28 E-value=0.14 Score=44.85 Aligned_cols=41 Identities=15% Similarity=-0.095 Sum_probs=30.6
Q ss_pred CcceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 3 DKTHVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 3 ~~~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.+.+++-.. .+++++|.|||+| |+.|+.-+|.+.+..+.+
T Consensus 11 ~G~~~~l~~~-~Gk~vvv~~~as~-----C~~c~~~~~~l~~l~~~~ 51 (153)
T TIGR02540 11 RGRTVSLEKY-RGKVSLVVNVASE-----CGFTDQNYRALQELHREL 51 (153)
T ss_pred CCCEecHHHh-CCCEEEEEEeCCC-----CCchhhhHHHHHHHHHHH
Confidence 3445555554 4678889999999 999999999887654433
No 309
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=92.07 E-value=0.023 Score=47.64 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=34.3
Q ss_pred CCcceeEEEEEeecceeeeehhHH-HHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 2 SDKTHVKLVEVESVEWVNRKTYSV-IALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~v~Fyap-~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+.+.+++-.+ .+++++|-||+. | |++|+..++.+.+..+.++
T Consensus 13 ~~g~~~~l~~l-~gk~~vl~f~~~~~-----c~~c~~~l~~l~~~~~~~~ 56 (124)
T PF00578_consen 13 SDGKTVSLSDL-KGKPVVLFFWPTAW-----CPFCQAELPELNELYKKYK 56 (124)
T ss_dssp TTSEEEEGGGG-TTSEEEEEEESTTT-----SHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEHHHH-CCCcEEEEEeCccC-----ccccccchhHHHHHhhhhc
Confidence 34566777776 679999999999 9 9999999999977654444
No 310
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.06 E-value=0.26 Score=50.84 Aligned_cols=54 Identities=22% Similarity=0.374 Sum_probs=39.8
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccc------------ccCccccCceEEEEeCCe
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR------------DFFHITKYPTLKIIRNGL 205 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~------------~~~~i~~~Ptl~~f~~g~ 205 (493)
++.|..+||++|++.+..+.+. +|.+-.+|.++.+... .+.|.+.+|+|.+ +|.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~ 69 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDV 69 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCE
Confidence 6679999999999988887763 6888889998765311 1246678899854 554
No 311
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=91.97 E-value=0.038 Score=63.76 Aligned_cols=40 Identities=10% Similarity=-0.027 Sum_probs=30.8
Q ss_pred eeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 6 HVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+++.+--.+++++|.|||+| |++|+..+|.++++.+.+.
T Consensus 411 ~~~l~~~lkGK~vll~FWAsW-----C~pC~~e~P~L~~l~~~y~ 450 (1057)
T PLN02919 411 PLQFRRDLKGKVVILDFWTYC-----CINCMHVLPDLEFLEKKYK 450 (1057)
T ss_pred cccchhhcCCCEEEEEEECCc-----ChhHHhHhHHHHHHHHHcC
Confidence 344422235899999999999 9999999999988755443
No 312
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=91.91 E-value=5.6 Score=42.41 Aligned_cols=158 Identities=15% Similarity=0.112 Sum_probs=94.8
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
...|+.| .+-|..|..+...+++++..- ++|.+-..+. . ...|++.+..+|....++|.|-
T Consensus 20 ~v~~~~~-~~~~~~~~~~~~~~~~~~~~s-------~~i~~~~~~~------~-----~~~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 20 PIELVAS-LDDSEKSAELKELLEEIASLS-------DKITVEEDSL------D-----VRKPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CEEEEEE-eCCCchHHHHHHHHHHHHHhC-------CceEEEEccC------C-----CCCCEEEEEcCCccceEEEEec
Confidence 3444555 447999999999999888763 4666543221 1 2479999998877766789998
Q ss_pred CCHHHHHHHHHHHcC--CCcccCCCchh---hhccC-CceEEEEecCCCCch---hHHHHHHHhhhccCCcceEeeec--
Q psy9502 215 RTTEALLNFIAEELK--DPVMDLEEAPK---FNVHD-KTLMLGRFNSKNSPE---YELFSRVCSTFNHFDVCKCFARF-- 283 (493)
Q Consensus 215 ~~~~~l~~fi~~~~~--~~~~~i~s~~~---l~~~~-~~~vv~ff~~~~~~~---~~~f~~~A~~l~~~~~~~f~~~~-- 283 (493)
..-.++-.||...+. .+-..+ +.+. ++.+. ...+-.|..+.|.-+ -..+.++|.. . +++.+-.+-
T Consensus 81 P~g~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~--~~i~~~~id~~ 156 (517)
T PRK15317 81 PMGHEFTSLVLALLQVGGHPPKL-DQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-N--PNITHTMIDGA 156 (517)
T ss_pred CccHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-C--CCceEEEEEch
Confidence 777777777765542 233334 3333 44555 445667776655432 2334444443 2 444443332
Q ss_pred ---------cCCCCCceEEecCCCcccccCcCChHHHHHHHHHh
Q psy9502 284 ---------RHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTEK 318 (493)
Q Consensus 284 ---------~~~~~p~ivf~~~~~~~~y~g~~~~~~l~~wi~~~ 318 (493)
+....|++++.. ...+.|....+++...+...
T Consensus 157 ~~~~~~~~~~v~~VP~~~i~~---~~~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 157 LFQDEVEARNIMAVPTVFLNG---EEFGQGRMTLEEILAKLDTG 197 (517)
T ss_pred hCHhHHHhcCCcccCEEEECC---cEEEecCCCHHHHHHHHhcc
Confidence 222367765533 35677887777777777653
No 313
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=91.42 E-value=1.6 Score=34.93 Aligned_cols=97 Identities=12% Similarity=0.206 Sum_probs=57.4
Q ss_pred hcHHHHHhcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcc--cchhhhhccCCCCCCCCe-EEEEeC
Q psy9502 329 ENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLF--YQRIFYHHLHLSSDDLPV-LRLDDY 405 (493)
Q Consensus 329 ~n~~~l~~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~--~~~~~l~~lgi~~~~~P~-ivi~~~ 405 (493)
..+..+......+++||....- ....-++++++++..-+|.=..+|+||.. -... ++.+.+++..-|. .++...
T Consensus 10 KdfKKLLRTr~NVLvLy~ks~k--~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKL-CKKlKv~~~~kp~~~~LkHY 86 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSKSAK--SAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKL-CKKLKVDPSSKPKPVELKHY 86 (112)
T ss_pred HHHHHHHhhcCcEEEEEecchh--hHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHH-HHHHccCCCCCCCcchhhcc
Confidence 4567777777889999987442 22222233333334447877888888885 5666 8999888544442 223222
Q ss_pred C-ccccCCCCCCCCCChhHHHHHHHH
Q psy9502 406 K-HIYRLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 406 ~-~~y~~~~~~~~~~~~~~l~~Fi~d 430 (493)
+ .-|. .+ ++-..+..++.+|+.|
T Consensus 87 KdG~fH-kd-YdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFH-TE-YNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCcc-cc-ccchhhHHHHHHHhhC
Confidence 2 2222 12 3334567888888875
No 314
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=90.75 E-value=0.047 Score=48.90 Aligned_cols=40 Identities=8% Similarity=-0.094 Sum_probs=31.2
Q ss_pred ceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.|++-.+..++++++.||++| |++|...+|.+.++.+.+
T Consensus 15 ~~v~l~~~~~~k~~ll~f~~t~-----Cp~c~~~~~~l~~l~~~~ 54 (171)
T cd02969 15 KTYSLADFADGKALVVMFICNH-----CPYVKAIEDRLNRLAKEY 54 (171)
T ss_pred CEEeHHHHhCCCEEEEEEECCC-----CccHHHHHHHHHHHHHHH
Confidence 4555555557789999999999 999999999887654433
No 315
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.73 E-value=0.38 Score=43.02 Aligned_cols=41 Identities=22% Similarity=0.421 Sum_probs=32.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEe
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd 179 (493)
+.++.++.|+...|+||+.+.+.+.++.+++ .+++.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~------~~~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL------PKDVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC------CCCceEEEcC
Confidence 4688999999999999999999998887776 3466665443
No 316
>KOG0911|consensus
Probab=89.94 E-value=0.14 Score=46.98 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=37.3
Q ss_pred cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc-cccCceE-EEEeCCe
Q psy9502 143 ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH-ITKYPTL-KIIRNGL 205 (493)
Q Consensus 143 a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Ptl-~~f~~g~ 205 (493)
.|.|++++++..++.+. +|.++..|.-.+.++.+... .+.+||+ -+|-+|.
T Consensus 151 ~P~CGFS~~~v~iL~~~------------nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSH------------NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cccccccHHHHHHHHHc------------CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 56899999888877664 78899999999888766543 2455665 3566775
No 317
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=89.62 E-value=0.069 Score=45.95 Aligned_cols=39 Identities=10% Similarity=-0.149 Sum_probs=29.5
Q ss_pred eeEEEEEeecceeeeehhHHHHHHHhhhh-hhhhhhhccCchHHHH
Q psy9502 6 HVKLVEVESVEWVNRKTYSVIALVLANRE-SKILLRAAQGLEDWFE 50 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fyap~~~~~~C~h-Ck~l~p~~~~~~~~~~ 50 (493)
.+++-.. .+++++|-||++| |+. |....|.+.+..+.+.
T Consensus 14 ~~~l~~~-~gk~~vl~f~~~~-----C~~~C~~~l~~l~~~~~~~~ 53 (142)
T cd02968 14 PVTLSDL-KGKPVLVYFGYTH-----CPDVCPTTLANLAQALKQLG 53 (142)
T ss_pred EEchHHh-CCCEEEEEEEcCC-----CcccCHHHHHHHHHHHHHhh
Confidence 3444443 5789999999999 997 9999999977544443
No 318
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=89.42 E-value=4.1 Score=32.47 Aligned_cols=74 Identities=20% Similarity=0.262 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeeccc
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G 213 (493)
+...++.|..+. ..|..+....+++|..- ++|.+-..+... ..|++.+..+|....++|.|
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-------dkI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~G 79 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-------DKITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAG 79 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-------CceEEEEecCCC-----------CCCEEEEecCCCcccEEEEe
Confidence 455666777665 88998888888887753 466554322211 46999998887555578999
Q ss_pred CCCHHHHHHHHHH
Q psy9502 214 QRTTEALLNFIAE 226 (493)
Q Consensus 214 ~~~~~~l~~fi~~ 226 (493)
-..=.++-.||..
T Consensus 80 iP~GhEf~Slila 92 (94)
T cd02974 80 IPMGHEFTSLVLA 92 (94)
T ss_pred cCCchhHHHHHHH
Confidence 8777777777753
No 319
>PLN02412 probable glutathione peroxidase
Probab=89.02 E-value=0.12 Score=46.28 Aligned_cols=33 Identities=3% Similarity=-0.179 Sum_probs=27.2
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
.+++++|.||++| |+.|+..+|.+.+..+.+..
T Consensus 28 ~gk~vlv~f~a~~-----C~~c~~e~~~l~~l~~~~~~ 60 (167)
T PLN02412 28 KGKVLLIVNVASK-----CGLTDSNYKELNVLYEKYKE 60 (167)
T ss_pred CCCEEEEEEeCCC-----CCChHHHHHHHHHHHHHHhh
Confidence 4689999999999 99999999998776544443
No 320
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=88.22 E-value=0.14 Score=48.29 Aligned_cols=32 Identities=3% Similarity=-0.175 Sum_probs=26.9
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+++++|.|||+| |+.|....|.+.++.+.+.
T Consensus 98 kGK~vvl~FwAsw-----Cp~c~~e~p~L~~L~~~~~ 129 (236)
T PLN02399 98 KGKVLLIVNVASK-----CGLTSSNYSELSHLYEKYK 129 (236)
T ss_pred CCCeEEEEEEcCC-----CcchHHHHHHHHHHHHHHh
Confidence 4689999999999 9999999999887654443
No 321
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=87.49 E-value=2.5 Score=30.84 Aligned_cols=58 Identities=7% Similarity=0.033 Sum_probs=39.8
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEe
Q psy9502 342 LILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDD 404 (493)
Q Consensus 342 lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~ 404 (493)
+.+|+.+++ ..++.....+.+.... ..++.|..+|....+.. ...+|+. ..|++++.+
T Consensus 3 v~~f~~~~C-~~C~~~~~~l~~l~~~-~~~i~~~~id~~~~~~l-~~~~~i~--~vPti~i~~ 60 (67)
T cd02973 3 IEVFVSPTC-PYCPDAVQAANRIAAL-NPNISAEMIDAAEFPDL-ADEYGVM--SVPAIVING 60 (67)
T ss_pred EEEEECCCC-CCcHHHHHHHHHHHHh-CCceEEEEEEcccCHhH-HHHcCCc--ccCEEEECC
Confidence 467777776 3445554444332233 34699999999988877 8889984 689998854
No 322
>smart00594 UAS UAS domain.
Probab=87.45 E-value=5.4 Score=33.38 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=58.1
Q ss_pred CceeecChhcHHHH-HhcCCcEEEEEEeCCCcchHHHHHHHH-HHHh--hhcCCcEEEEEEeCc--ccchhhhhccCCCC
Q psy9502 321 PLVREITYENAEEI-SEEGRPLLILCHRHGDLTSVAIFKRIV-RDTI--GQYAQNLSFVTADDL--FYQRIFYHHLHLSS 394 (493)
Q Consensus 321 P~v~elt~~n~~~l-~~~~~p~lilf~~~~d~~~~~~~~~~~-~~~~--~~~~~~i~f~~~d~~--~~~~~~l~~lgi~~ 394 (493)
|.+-.-+.+.+... ..++++++|.|+.+++. .++.|.+.+ .+.. +....++.+..+|.. +-... ...+++.
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~-~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l-~~~~~~~- 85 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSP-DSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRV-SQFYKLD- 85 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCc-hHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHH-HHhcCcC-
Confidence 44555555555333 35578888888888763 555554322 1111 222345777667755 33334 6778875
Q ss_pred CCCCeEEEEeCCc---cccC-CCCCCCCCChhHHHHHH
Q psy9502 395 DDLPVLRLDDYKH---IYRL-PSLITLAENPSTLVSIV 428 (493)
Q Consensus 395 ~~~P~ivi~~~~~---~y~~-~~~~~~~~~~~~l~~Fi 428 (493)
.+|.+++.+++. .+.. .. ..+..+++.+.+++
T Consensus 86 -~~P~~~~l~~~~g~~~~~~~~~-~~G~~~~~~l~~~l 121 (122)
T smart00594 86 -SFPYVAIVDPRTGQRVIEWVGV-VEGEISPEELMTFL 121 (122)
T ss_pred -CCCEEEEEecCCCceeEEEecc-ccCCCCHHHHHHhh
Confidence 799999988753 1111 11 34455667776665
No 323
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.37 E-value=1.8 Score=46.52 Aligned_cols=80 Identities=19% Similarity=0.416 Sum_probs=63.5
Q ss_pred EcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHH-H--HHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc------
Q psy9502 121 YLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPV-L--EETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH------ 191 (493)
Q Consensus 121 ~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~-~--~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~------ 191 (493)
.-+.+.|.+.-..++++|+..-..||..|+-|..+ | .++|..+. ...+-.+||-++-|++-+.|.
T Consensus 30 pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN------~~FV~IKVDREERPDvD~~Ym~~~q~~ 103 (667)
T COG1331 30 PWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILN------ENFVPVKVDREERPDVDSLYMNASQAI 103 (667)
T ss_pred ccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHH------hCceeeeEChhhccCHHHHHHHHHHHh
Confidence 35678899998999999999999999999999886 3 67888884 357788999999887766663
Q ss_pred --cccCc-eEEEEeCCee
Q psy9502 192 --ITKYP-TLKIIRNGLA 206 (493)
Q Consensus 192 --i~~~P-tl~~f~~g~~ 206 (493)
--++| ||++-++|++
T Consensus 104 tG~GGWPLtVfLTPd~kP 121 (667)
T COG1331 104 TGQGGWPLTVFLTPDGKP 121 (667)
T ss_pred ccCCCCceeEEECCCCce
Confidence 45799 5555566665
No 324
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=87.30 E-value=0.29 Score=44.35 Aligned_cols=38 Identities=3% Similarity=-0.144 Sum_probs=26.1
Q ss_pred cceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCchHH
Q psy9502 4 KTHVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDW 48 (493)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~ 48 (493)
.+.+++-.. .+++++|-|+|.| |+.|++ .|.++++.+.
T Consensus 15 G~~v~Ls~~-~GKvvLVvf~AS~-----C~~~~q-~~~L~~L~~~ 52 (183)
T PRK10606 15 GEVTTLEKY-AGNVLLIVNVASK-----CGLTPQ-YEQLENIQKA 52 (183)
T ss_pred CCEEeHHHh-CCCEEEEEEEeCC-----CCCcHH-HHHHHHHHHH
Confidence 334444332 4689999999999 999975 6777654333
No 325
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=86.79 E-value=2.1 Score=37.39 Aligned_cols=45 Identities=16% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
.+.+++.|+...|+||..+.+.+.++-+++-+ +++|.+..++.-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~----~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYID----PGKVKFVFRPVPL 56 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT----TTTEEEEEEESSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccC----CCceEEEEEEccc
Confidence 57889999999999999999999888777633 3588888777643
No 326
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=86.34 E-value=5.5 Score=32.73 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=53.9
Q ss_pred HhcCCcEEEEEEeCCCcchHHHHHHH-HHHHh--hhcCCcEEEEEEeCc--ccchhhhhccCCCCCCCCeEEEEeC-Cc-
Q psy9502 335 SEEGRPLLILCHRHGDLTSVAIFKRI-VRDTI--GQYAQNLSFVTADDL--FYQRIFYHHLHLSSDDLPVLRLDDY-KH- 407 (493)
Q Consensus 335 ~~~~~p~lilf~~~~d~~~~~~~~~~-~~~~~--~~~~~~i~f~~~d~~--~~~~~~l~~lgi~~~~~P~ivi~~~-~~- 407 (493)
...+++++|.|+.+++ ..++.+.+. +.... +....++.+..+|.. +-..+ +..+++ ..+|.+++.++ ..
T Consensus 14 k~~~K~llv~~~~~~c-~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~-~~~~~~--~~~P~~~~i~~~~g~ 89 (114)
T cd02958 14 KSEKKWLLVYLQSEDE-FDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRF-LQSYKV--DKYPHIAIIDPRTGE 89 (114)
T ss_pred HhhCceEEEEEecCCc-chHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHH-HHHhCc--cCCCeEEEEeCccCc
Confidence 3457888888888776 455665432 22211 233446777777765 33344 677876 47999998887 33
Q ss_pred -cccCCCCCCCCCChhHHHHHHHHHH
Q psy9502 408 -IYRLPSLITLAENPSTLVSIVEDYF 432 (493)
Q Consensus 408 -~y~~~~~~~~~~~~~~l~~Fi~d~~ 432 (493)
.+++ .+..+++.+.+-|+.+.
T Consensus 90 ~l~~~----~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 90 VLKVW----SGNITPEDLLSQLIEFL 111 (114)
T ss_pred EeEEE----cCCCCHHHHHHHHHHHH
Confidence 3443 33456676666666554
No 327
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=85.73 E-value=1.4 Score=38.75 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=40.9
Q ss_pred HHHHcCCCeEEEEEEcCCChhHhhh-hHHHHHHHHHHhhcCCCCCCe-EEEEEeCCCC---ccccccCcc
Q psy9502 128 TEVLSQYKLAVVNFYADWCRFCHLL-KPVLEETAAIVDTQYPQDNQV-VVAQINCDEE---PRIRDFFHI 192 (493)
Q Consensus 128 ~~~l~~~~~~lV~Fya~wC~~C~~l-~p~~~~~a~~~~~~~~~~~~v-~~~~vd~~~~---~~l~~~~~i 192 (493)
.+.+.+...+|+.|.+.||+.|..- .+.|.+...++++. ++ .+..|.++.. ...++++++
T Consensus 24 ~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-----g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 24 SELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-----GVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred HHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-----CCCEEEEEECCCHHHHHHHHHhhCC
Confidence 3333333455555567899999998 99999999999765 44 4677776643 345666666
No 328
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=85.52 E-value=4.3 Score=31.97 Aligned_cols=62 Identities=10% Similarity=0.068 Sum_probs=43.3
Q ss_pred cCCcE-EEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEE
Q psy9502 337 EGRPL-LILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLD 403 (493)
Q Consensus 337 ~~~p~-lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~ 403 (493)
-..|+ +.+|+.+++ ..++.....+.+.+.. ..++.|..+|.+.++.. ...+|+. ..|.++++
T Consensus 10 l~~pv~i~~F~~~~C-~~C~~~~~~~~~l~~~-~~~i~~~~vd~~~~~e~-a~~~~V~--~vPt~vid 72 (89)
T cd03026 10 LNGPINFETYVSLSC-HNCPDVVQALNLMAVL-NPNIEHEMIDGALFQDE-VEERGIM--SVPAIFLN 72 (89)
T ss_pred cCCCEEEEEEECCCC-CCcHHHHHHHHHHHHH-CCCceEEEEEhHhCHHH-HHHcCCc--cCCEEEEC
Confidence 34676 667777765 4455544444333344 34699999999998888 8899995 79999873
No 329
>KOG1752|consensus
Probab=85.23 E-value=2 Score=35.01 Aligned_cols=66 Identities=23% Similarity=0.415 Sum_probs=39.2
Q ss_pred HHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-cc----cccCccccCceEEEE
Q psy9502 127 FTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RI----RDFFHITKYPTLKII 201 (493)
Q Consensus 127 f~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-~l----~~~~~i~~~Ptl~~f 201 (493)
+.+++.++. +|.|..+||++|++++..|.+ + .....+..+|-..+. ++ .+.-+-+..|.+ |
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~------~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--F 72 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD----L------GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--F 72 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh----C------CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--E
Confidence 455564443 455899999999998888887 2 224455555555432 22 222234467875 4
Q ss_pred eCCee
Q psy9502 202 RNGLA 206 (493)
Q Consensus 202 ~~g~~ 206 (493)
-+|+.
T Consensus 73 I~Gk~ 77 (104)
T KOG1752|consen 73 IGGKF 77 (104)
T ss_pred ECCEE
Confidence 56653
No 330
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=85.16 E-value=0.2 Score=43.52 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=27.6
Q ss_pred ceeEEEEEeecceeeeehh-HHHHHHHhhhhhhhhhhhccCchH
Q psy9502 5 THVKLVEVESVEWVNRKTY-SVIALVLANRESKILLRAAQGLED 47 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~ 47 (493)
+.+++-.+.+.++++|-|| +.| |+.|...+|.+.+..+
T Consensus 18 ~~v~l~~~~g~k~~vl~f~~~~~-----c~~C~~~~~~l~~~~~ 56 (149)
T cd03018 18 QEVRLSEFRGRKPVVLVFFPLAF-----TPVCTKELCALRDSLE 56 (149)
T ss_pred CEEeHHHHcCCCeEEEEEeCCCC-----CccHHHHHHHHHHHHH
Confidence 3444444433478888888 999 9999999998876543
No 331
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=84.23 E-value=0.17 Score=43.62 Aligned_cols=35 Identities=9% Similarity=0.019 Sum_probs=26.8
Q ss_pred eeEEEEEeecceeeeehhHHHHHHHhh-hhhhhhhhhccCch
Q psy9502 6 HVKLVEVESVEWVNRKTYSVIALVLAN-RESKILLRAAQGLE 46 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fyap~~~~~~C-~hCk~l~p~~~~~~ 46 (493)
.+++-.+ .++++++.||+.| | ++|+..+|.+.+..
T Consensus 18 ~~~l~~~-~gk~vvl~f~~~~-----~c~~C~~e~~~l~~~~ 53 (143)
T cd03014 18 EVSLADF-AGKVKVISVFPSI-----DTPVCATQTKRFNKEA 53 (143)
T ss_pred EEeHHHh-CCCeEEEEEEcCC-----CCCcCHHHHHHHHHHH
Confidence 3444333 4789999999988 6 99999999987653
No 332
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=83.96 E-value=0.26 Score=42.75 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=27.2
Q ss_pred ccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 184 PRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 184 ~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
..++.+++|.+.||+++ +|. .+.|..+.+.|.+.|
T Consensus 119 ~~~~~~~gi~gtPt~~v--~g~----~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALGITGTPAFII--GDT----VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcCCCcCCeEEE--CCE----EecCCCCHHHHHHHh
Confidence 35678899999999876 454 478998888887765
No 333
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=82.85 E-value=1.6 Score=40.43 Aligned_cols=40 Identities=13% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCChhHhhhhHHH---HHHHHHHhhcCCCCCCeEEEEEe
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVL---EETAAIVDTQYPQDNQVVVAQIN 179 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~---~~~a~~~~~~~~~~~~v~~~~vd 179 (493)
+++.+|.|+.-.|+||..+.+.+ ..+.+.+ .+++.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~------~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKL------PEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhC------CCCCeEEEec
Confidence 35668999999999999999876 5666555 3456666553
No 334
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=82.74 E-value=14 Score=39.38 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=92.4
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
...|+.|.. -|..|..+....++++..- ++|.+-..+.. ....|++.+..+|....++|.|-
T Consensus 20 ~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-------~ki~~~~~~~~----------~~~~p~~~~~~~~~~~~i~f~g~ 81 (515)
T TIGR03140 20 PVTLVLSAG-SHEKSKELLELLDEIASLS-------DKISLTQNTAD----------TLRKPSFTILRDGADTGIRFAGI 81 (515)
T ss_pred CEEEEEEeC-CCchhHHHHHHHHHHHHhC-------CCeEEEEecCC----------cCCCCeEEEecCCcccceEEEec
Confidence 444555655 6999999998888887763 46766443321 13459999988877666789997
Q ss_pred CCHHHHHHHHHHHcC--CCcccCCCchh---hhccC-CceEEEEecCCCCch---hHHHHHHHhhhccCCcceEeeec--
Q psy9502 215 RTTEALLNFIAEELK--DPVMDLEEAPK---FNVHD-KTLMLGRFNSKNSPE---YELFSRVCSTFNHFDVCKCFARF-- 283 (493)
Q Consensus 215 ~~~~~l~~fi~~~~~--~~~~~i~s~~~---l~~~~-~~~vv~ff~~~~~~~---~~~f~~~A~~l~~~~~~~f~~~~-- 283 (493)
..-.++-.||...+. .+-..+ +.+. +..+. ...+-.|..+.|.-+ -..+.++|... +++..-..-
T Consensus 82 P~g~Ef~s~i~~i~~~~~~~~~l-~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~---p~i~~~~id~~ 157 (515)
T TIGR03140 82 PGGHEFTSLVLAILQVGGHGPKL-DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN---PNISHTMIDGA 157 (515)
T ss_pred CCcHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC---CCceEEEEEch
Confidence 777777777765432 223344 3333 44555 455667776655432 23333444332 344433221
Q ss_pred ---------cCCCCCceEEecCCCcccccCcCChHHHHHHHHHh
Q psy9502 284 ---------RHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTEK 318 (493)
Q Consensus 284 ---------~~~~~p~ivf~~~~~~~~y~g~~~~~~l~~wi~~~ 318 (493)
+....|++++.. ...+.|....+++.+-+...
T Consensus 158 ~~~~~~~~~~v~~VP~~~i~~---~~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 158 LFQDEVEALGIQGVPAVFLNG---EEFHNGRMDLAELLEKLEET 198 (515)
T ss_pred hCHHHHHhcCCcccCEEEECC---cEEEecCCCHHHHHHHHhhc
Confidence 222367665543 35577877776666665543
No 335
>PF13728 TraF: F plasmid transfer operon protein
Probab=81.81 E-value=6.2 Score=36.77 Aligned_cols=82 Identities=15% Similarity=0.030 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcc---c------chhhhhccCCCCCCCCeEEEEeCCccc
Q psy9502 339 RPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLF---Y------QRIFYHHLHLSSDDLPVLRLDDYKHIY 409 (493)
Q Consensus 339 ~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~---~------~~~~l~~lgi~~~~~P~ivi~~~~~~y 409 (493)
.--+++|+.++| ..|+.+..++....++|.=.+..+.+||.- | ... .+.||+. ..|++++.+....=
T Consensus 121 ~~gL~~F~~~~C-~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~-~~~l~v~--~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 121 KYGLFFFYRSDC-PYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQ-AKRLGVK--VTPALFLVNPNTKK 196 (215)
T ss_pred CeEEEEEEcCCC-chhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHH-HHHcCCC--cCCEEEEEECCCCe
Confidence 334777777776 578888888776557776678888999862 2 333 5668884 89999998886422
Q ss_pred cCCCCCCCCCChhHHH
Q psy9502 410 RLPSLITLAENPSTLV 425 (493)
Q Consensus 410 ~~~~~~~~~~~~~~l~ 425 (493)
.+|- .-+..+.+.|.
T Consensus 197 ~~pv-~~G~~s~~~L~ 211 (215)
T PF13728_consen 197 WYPV-SQGFMSLDELE 211 (215)
T ss_pred EEEE-eeecCCHHHHH
Confidence 2232 23555555554
No 336
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=81.73 E-value=10 Score=36.53 Aligned_cols=110 Identities=16% Similarity=0.119 Sum_probs=57.8
Q ss_pred cCCceeecC-hhcHHHHHhcC---CcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCC
Q psy9502 319 CVPLVREIT-YENAEEISEEG---RPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSS 394 (493)
Q Consensus 319 ~~P~v~elt-~~n~~~l~~~~---~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~ 394 (493)
.+..|.+++ .+.+.+.+... .-++|.||.++. ..+..+...+...+.+|. .+.|+.+.+..-+ . ...|..
T Consensus 123 ~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~-~~C~~mn~~L~~LA~kyp-~vKFvkI~a~~~~-~-~~~f~~-- 196 (265)
T PF02114_consen 123 RFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGF-PRCEIMNSCLECLARKYP-EVKFVKIRASKCP-A-SENFPD-- 196 (265)
T ss_dssp ---SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTS-CCHHHHHHHHHHHHHH-T-TSEEEEEEECGCC-T-TTTS-T--
T ss_pred cCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCC-chHHHHHHHHHHHHHhCC-ceEEEEEehhccC-c-ccCCcc--
Confidence 356788885 46666665432 235666666554 455555555544446755 4999999887543 3 555644
Q ss_pred CCCCeEEEEeCCcc----ccCCCCCCCCCChhHHHHHHHHHHcCCc
Q psy9502 395 DDLPVLRLDDYKHI----YRLPSLITLAENPSTLVSIVEDYFSGKL 436 (493)
Q Consensus 395 ~~~P~ivi~~~~~~----y~~~~~~~~~~~~~~l~~Fi~d~~sGkl 436 (493)
..+|+|++...+.. -.+.+...+.++...|..||.. .|-|
T Consensus 197 ~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~--~G~l 240 (265)
T PF02114_consen 197 KNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE--YGVL 240 (265)
T ss_dssp TC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT--TTSS
T ss_pred cCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH--cCCC
Confidence 68999888776532 1222112334667888888863 4444
No 337
>PTZ00256 glutathione peroxidase; Provisional
Probab=81.65 E-value=0.32 Score=44.12 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=28.1
Q ss_pred cCccccCce---EEEE-eCCeeeeeecccCCCHHHHHHHHHHHc
Q psy9502 189 FFHITKYPT---LKII-RNGLATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 189 ~~~i~~~Pt---l~~f-~~g~~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
.+++.++|+ .+++ ++|.... .|.|..+.+.+.+.|.+.+
T Consensus 139 ~~~~~~iP~~~~tflID~~G~Iv~-~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 139 TNEARQIPWNFAKFLIDGQGKVVK-YFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cccCcccCcceEEEEECCCCCEEE-EECCCCCHHHHHHHHHHHh
Confidence 457888994 3455 5566554 7889999888888887755
No 338
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=81.63 E-value=0.29 Score=42.26 Aligned_cols=31 Identities=16% Similarity=-0.181 Sum_probs=22.3
Q ss_pred ecceeeeeh-hHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKT-YSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~F-yap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.+++++|-| ++.| |+.|+..+|.+.+..+.+
T Consensus 22 ~~~~~vl~f~~~~~-----Cp~C~~~~~~l~~~~~~~ 53 (149)
T cd02970 22 GEGPVVVVFYRGFG-----CPFCREYLRALSKLLPEL 53 (149)
T ss_pred cCCCEEEEEECCCC-----ChhHHHHHHHHHHHHHHH
Confidence 345555555 5999 999999999987754333
No 339
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=81.54 E-value=10 Score=36.13 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=61.7
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccch---h-----hhhccCCCCCCCCeEEEEeCCccccC
Q psy9502 340 PLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQR---I-----FYHHLHLSSDDLPVLRLDDYKHIYRL 411 (493)
Q Consensus 340 p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~---~-----~l~~lgi~~~~~P~ivi~~~~~~y~~ 411 (493)
--+++|+..+| ..+..+.-++.+-.++|.=.+..+.+||.-.+. . ....+|+ ...|++++.+.+..=.+
T Consensus 145 ~GL~fFy~s~C-p~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v--~~~PAl~Lv~~~t~~~~ 221 (248)
T PRK13703 145 YGLMFFYRGQD-PIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV--KYFPALMLVDPKSGSVR 221 (248)
T ss_pred ceEEEEECCCC-chhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC--cccceEEEEECCCCcEE
Confidence 44667777555 778888877765556767678899999963322 2 1345777 46899999888643333
Q ss_pred CCCCCCCCChhHHHHHHHHHHcCC
Q psy9502 412 PSLITLAENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 412 ~~~~~~~~~~~~l~~Fi~d~~sGk 435 (493)
|- .-+..+.+.|.+=|..+..|.
T Consensus 222 pv-~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 222 PL-SYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EE-eeccCCHHHHHHHHHHHHhcc
Confidence 43 346677788877777776664
No 340
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=81.33 E-value=17 Score=27.16 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=47.3
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-ccccccCccccCceEEEEeCCeeeeeecccCCCHH
Q psy9502 140 NFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-PRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTE 218 (493)
Q Consensus 140 ~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~ 218 (493)
+++.++|++|++..-.++... - ...+..++..+. ..+.+...-...|++. .+|... .+..
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~-----i-----~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-------~dS~ 61 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKG-----I-----PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-------TDSA 61 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHT-----E-----EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-------ESHH
T ss_pred CCCcCCChHHHHHHHHHHHcC-----C-----eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-------eCHH
Confidence 467899999998876665531 1 344445554442 3445555667899996 556643 2567
Q ss_pred HHHHHHHHHcCCC
Q psy9502 219 ALLNFIAEELKDP 231 (493)
Q Consensus 219 ~l~~fi~~~~~~~ 231 (493)
+|++|+.++...+
T Consensus 62 ~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 62 AIIEYLEERYPGP 74 (75)
T ss_dssp HHHHHHHHHSTSS
T ss_pred HHHHHHHHHcCCC
Confidence 9999999877643
No 341
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=81.16 E-value=0.5 Score=43.06 Aligned_cols=32 Identities=9% Similarity=-0.045 Sum_probs=26.6
Q ss_pred ecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+++++|-|| +.| |++|+.-+|.+.+..+.+.
T Consensus 30 ~Gk~vvl~F~p~~~-----cp~C~~el~~l~~~~~~~~ 62 (187)
T TIGR03137 30 KGKWSVFFFYPADF-----TFVCPTELEDLADKYAELK 62 (187)
T ss_pred CCCEEEEEEECCCc-----CCcCHHHHHHHHHHHHHHH
Confidence 4679999999 999 9999999999977644443
No 342
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=81.05 E-value=0.38 Score=35.64 Aligned_cols=21 Identities=5% Similarity=-0.235 Sum_probs=17.5
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
+.-|+++| |++|+.+.+.+++
T Consensus 2 i~lf~~~~-----C~~C~~~~~~l~~ 22 (74)
T TIGR02196 2 VKVYTTPW-----CPPCKKAKEYLTS 22 (74)
T ss_pred EEEEcCCC-----ChhHHHHHHHHHH
Confidence 35689999 9999999987754
No 343
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=81.01 E-value=11 Score=35.99 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=60.3
Q ss_pred cEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccch---------hhhhccCCCCCCCCeEEEEeCCcccc
Q psy9502 340 PLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQR---------IFYHHLHLSSDDLPVLRLDDYKHIYR 410 (493)
Q Consensus 340 p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~---------~~l~~lgi~~~~~P~ivi~~~~~~y~ 410 (493)
--+++|+..+| ..+..+.-++..-.++|.=.+..+.+||.-.+. . .+.||+. ..|++++.+.+..-.
T Consensus 152 ~gL~fFy~~~C-~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gq-a~~l~v~--~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 152 YGLFFFYRGKS-PISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQ-AQHLGVK--YFPALYLVNPKSQKM 227 (256)
T ss_pred eeEEEEECCCC-chhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHH-HHhcCCc--cCceEEEEECCCCcE
Confidence 44677777665 678888877765557777789999999984322 3 4568884 699999988864333
Q ss_pred CCCCCCCCCChhHHHHHHHHHHcC
Q psy9502 411 LPSLITLAENPSTLVSIVEDYFSG 434 (493)
Q Consensus 411 ~~~~~~~~~~~~~l~~Fi~d~~sG 434 (493)
+|- .-+.++.+.|.+=|..+.++
T Consensus 228 ~pv-~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPL-AYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEE-eeccCCHHHHHHHHHHHHhc
Confidence 343 34566777776655555444
No 344
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.58 E-value=8.9 Score=28.94 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=41.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc----cccccCccccCceEEEEeCCeeeeeeccc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----RIRDFFHITKYPTLKIIRNGLATRSEYRS 213 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G 213 (493)
+..++.++|++|.+.+-.+.+. ++.+-.++..... ++.+.-+-...|++..-.+|...
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~------------gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l------ 63 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL------------ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM------ 63 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc------------CCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE------
Confidence 3467788999998877666554 4555555554322 23222344678988532223222
Q ss_pred CCCHHHHHHHHHHH
Q psy9502 214 QRTTEALLNFIAEE 227 (493)
Q Consensus 214 ~~~~~~l~~fi~~~ 227 (493)
....+|++|+.+.
T Consensus 64 -~es~~I~~yL~~~ 76 (77)
T cd03041 64 -FESADIVKYLFKT 76 (77)
T ss_pred -EcHHHHHHHHHHh
Confidence 2456888888764
No 345
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=80.13 E-value=0.4 Score=36.10 Aligned_cols=21 Identities=10% Similarity=-0.122 Sum_probs=17.8
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
++-|+++| |++|+.+.+.+++
T Consensus 2 v~ly~~~~-----C~~C~~~~~~L~~ 22 (77)
T TIGR02200 2 ITVYGTTW-----CGYCAQLMRTLDK 22 (77)
T ss_pred EEEEECCC-----ChhHHHHHHHHHH
Confidence 45689999 9999999998754
No 346
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=79.88 E-value=0.59 Score=41.86 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=29.4
Q ss_pred eeEEEEEeecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 6 HVKLVEVESVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 6 ~~~~~~~~~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.+++-.. .+++++|-|| +.| |++|....|.+.+..+.+.
T Consensus 21 ~~~l~~~-~Gk~vvl~F~~~~~-----c~~C~~~l~~l~~~~~~~~ 60 (173)
T cd03015 21 EISLSDY-KGKWVVLFFYPLDF-----TFVCPTEIIAFSDRYEEFK 60 (173)
T ss_pred EEehHHh-CCCEEEEEEECCCC-----CCcCHHHHHHHHHHHHHHH
Confidence 3444443 4689999999 899 9999999999877644443
No 347
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=79.39 E-value=0.49 Score=40.41 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=29.3
Q ss_pred ceeEEEEEeecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 5 THVKLVEVESVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.+++-.+ .+++++|.|| +.| |+.|...+|.+.+..+.+
T Consensus 13 ~~~~l~~~-~gk~~ll~f~~~~~-----c~~C~~~~~~l~~~~~~~ 52 (140)
T cd02971 13 GEVSLSDF-KGKWVVLFFYPKDF-----TPVCTTELCAFRDLAEEF 52 (140)
T ss_pred cEEehHHh-CCCeEEEEEeCCCC-----CCcCHHHHHHHHHHHHHH
Confidence 34444443 5788999999 789 999999999997764444
No 348
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=79.36 E-value=0.4 Score=36.85 Aligned_cols=21 Identities=10% Similarity=-0.247 Sum_probs=18.4
Q ss_pred eehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 20 RKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 20 v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
+-|+++| |++|+.+.+.+++.
T Consensus 2 ~~f~~~~-----Cp~C~~~~~~L~~~ 22 (84)
T TIGR02180 2 VVFSKSY-----CPYCKKAKEILAKL 22 (84)
T ss_pred EEEECCC-----ChhHHHHHHHHHHc
Confidence 6789999 99999999988663
No 349
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=78.98 E-value=3.6 Score=35.78 Aligned_cols=54 Identities=17% Similarity=0.329 Sum_probs=37.1
Q ss_pred EEEEEcC------CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccc----ccCcc----ccCceEEEEeC
Q psy9502 138 VVNFYAD------WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR----DFFHI----TKYPTLKIIRN 203 (493)
Q Consensus 138 lV~Fya~------wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i----~~~Ptl~~f~~ 203 (493)
+|.|+++ +|++|++.+..++.. +|.+-.+|.+.+++.. +..+- ...|.| |-+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqV--FI~ 67 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRV--FVD 67 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEE--EEC
Confidence 4566777 899999998888764 6888889988765433 33333 467776 455
Q ss_pred Ce
Q psy9502 204 GL 205 (493)
Q Consensus 204 g~ 205 (493)
|+
T Consensus 68 G~ 69 (147)
T cd03031 68 GR 69 (147)
T ss_pred CE
Confidence 65
No 350
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=78.71 E-value=0.5 Score=42.23 Aligned_cols=27 Identities=7% Similarity=-0.244 Sum_probs=23.7
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
..+.++++|+.+. |+||+.+.+.+.+.
T Consensus 14 ~~~~~i~~f~D~~-----Cp~C~~~~~~~~~~ 40 (178)
T cd03019 14 SGKPEVIEFFSYG-----CPHCYNFEPILEAW 40 (178)
T ss_pred CCCcEEEEEECCC-----CcchhhhhHHHHHH
Confidence 5678899999999 99999999988553
No 351
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=78.10 E-value=0.38 Score=42.96 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=28.0
Q ss_pred cceeEEEEEeecceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 4 KTHVKLVEVESVEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 4 ~~~~~~~~~~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
.+.+++-.+ .++++++.||+.| -|+.|+..+|.+.+.
T Consensus 34 g~~v~l~~~-~Gk~vvl~f~~s~----~cp~C~~e~~~l~~~ 70 (167)
T PRK00522 34 LSDVSLADF-AGKRKVLNIFPSI----DTGVCATSVRKFNQE 70 (167)
T ss_pred CcEEehHHh-CCCEEEEEEEcCC----CCCccHHHHHHHHHH
Confidence 344565554 4789999999987 258999999988664
No 352
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=78.00 E-value=0.56 Score=42.45 Aligned_cols=26 Identities=0% Similarity=-0.224 Sum_probs=24.1
Q ss_pred cceeeeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 15 VEWVNRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 15 ~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
++..+|.|||.| |+.|..-+|.++.+
T Consensus 59 GKV~lvn~~Asw-----c~~c~~e~P~l~~l 84 (184)
T TIGR01626 59 GKVRVVHHIAGR-----TSAKEXNASLIDAI 84 (184)
T ss_pred CCEEEEEEEecC-----CChhhccchHHHHH
Confidence 788999999999 99999999999775
No 353
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=76.54 E-value=0.54 Score=32.87 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=19.1
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
++.||+.| |++|+.+.+.+.+.
T Consensus 1 l~~~~~~~-----c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPW-----CPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCC-----ChhHHhhhhHHHHH
Confidence 46789999 99999999988764
No 354
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=76.47 E-value=0.55 Score=40.13 Aligned_cols=39 Identities=15% Similarity=-0.030 Sum_probs=28.6
Q ss_pred ceeEEEEEeecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 5 THVKLVEVESVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.+++..+. ++++++.|| +.| |+.|...+|.+.+..+.+
T Consensus 14 ~~~~l~~~~-gk~~ll~f~~~~~-----cp~C~~~~~~l~~~~~~~ 53 (140)
T cd03017 14 ETVSLSDLR-GKPVVLYFYPKDD-----TPGCTKEACDFRDLYEEF 53 (140)
T ss_pred CEEeHHHhC-CCcEEEEEeCCCC-----CCchHHHHHHHHHHHHHH
Confidence 344444433 789999999 599 999999999887654433
No 355
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=76.20 E-value=0.89 Score=39.84 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=28.6
Q ss_pred cccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 185 RIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 185 ~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
..+++.+|++.||+++ +|+. +.|..+.++|.+.|.+
T Consensus 127 ~~~~~~~i~~tPt~~i--nG~~----~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLGITGTPTFFI--NGKY----VVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-SSSSEEEE--TTCE----EETTTSHHHHHHHHHH
T ss_pred HHHHHcCCccccEEEE--CCEE----eCCCCCHHHHHHHHcC
Confidence 4568889999999987 7764 5688999999998864
No 356
>KOG0914|consensus
Probab=75.81 E-value=0.8 Score=41.83 Aligned_cols=33 Identities=3% Similarity=-0.094 Sum_probs=27.0
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
....++|+|||-| -+.|.+.+|.+.++.-.+.-
T Consensus 143 k~t~WlIeFfa~w-----s~~Cv~~spvfaeLS~kyn~ 175 (265)
T KOG0914|consen 143 KRTYWLIEFFACW-----SPKCVRFSPVFAELSIKYNN 175 (265)
T ss_pred CceEEEEEEEeec-----ChhhcccccccHHHHHHhCC
Confidence 4456789999999 99999999999987654433
No 357
>KOG2501|consensus
Probab=75.27 E-value=2 Score=37.48 Aligned_cols=32 Identities=9% Similarity=-0.017 Sum_probs=27.8
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhh
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLE 53 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~ 53 (493)
.++.+.+-|=|-| |++|+.+.|+..+ ||+.+.
T Consensus 32 ~gKvV~lyFsA~w-----C~pCR~FTP~Lk~---fYe~l~ 63 (157)
T KOG2501|consen 32 QGKVVGLYFSAHW-----CPPCRDFTPILKD---FYEELK 63 (157)
T ss_pred CCcEEEEEEEEEE-----CCchhhCCchHHH---HHHHHH
Confidence 4688889999999 9999999999855 888866
No 358
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=74.16 E-value=32 Score=30.23 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=56.9
Q ss_pred CCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC---------------------CCccccccCc
Q psy9502 134 YKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD---------------------EEPRIRDFFH 191 (493)
Q Consensus 134 ~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~ 191 (493)
++.|+++|| ..|++-|..-.-.|+....++++. ++.+.-|..+ .+..+|+.|+
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~-----~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~yg 104 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL-----GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYG 104 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC-----CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhC
Confidence 567888888 458899999999999999888765 3444444433 3456778887
Q ss_pred ccc------------CceEEEEeC-Ceeeeeeccc---CCCHHHHHHHHHHH
Q psy9502 192 ITK------------YPTLKIIRN-GLATRSEYRS---QRTTEALLNFIAEE 227 (493)
Q Consensus 192 i~~------------~Ptl~~f~~-g~~~~~~y~G---~~~~~~l~~fi~~~ 227 (493)
+-+ -++..++.. |.... .++. .-.++++++++++.
T Consensus 105 v~~~k~~~gk~~~~~~R~TfvId~dG~I~~-~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 105 VWGEKKMYGKEYMGIERSTFVIDPDGKIRY-VWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccccccCccccccccceEEEECCCCeEEE-EecCCCCcccHHHHHHHHHHh
Confidence 743 244455544 55433 3432 34567788877764
No 359
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.52 E-value=3.9 Score=33.13 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=25.9
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
..|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------------~i~~~~idi~~~~ 35 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------------GIEYEFIDYLKEP 35 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------------CCCcEEEeeccCC
Confidence 568999999999988777663 5667777776543
No 360
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=72.00 E-value=6.8 Score=28.97 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=31.0
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-ccccccCccccCceEE
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-PRIRDFFHITKYPTLK 199 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Ptl~ 199 (493)
+.|+.+||++|.+.+-.+.+..- .+.+..||.... +++.+.......|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl----------~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI----------TVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC----------CcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 46788999999888766665421 334445554322 3344444556789884
No 361
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=70.69 E-value=63 Score=27.10 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=61.9
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCC-CcchHHHHHHHHHHHhhhcCCcEEEEEEeCcc-----cchhhhhccCCCCCC
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHG-DLTSVAIFKRIVRDTIGQYAQNLSFVTADDLF-----YQRIFYHHLHLSSDD 396 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~-d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~-----~~~~~l~~lgi~~~~ 396 (493)
...|+.-+|..+...-+-+++=|--.= .-+...+|.+...+.+.. -.++.++.+.... +..+ .+.+|++..+
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayPyGeKhd~F~~~A~e~~~~-~~dLLvAeVGikDYGek~N~~L-aery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYPYGEKHDAFKKLAKEASAS-SDDLLVAEVGIKDYGEKENMEL-AERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS--CHHHHHHHHHHHHHHCC--SSEEEEEEECBSSSS-CCHHH-HHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEeccCCCcchHHHHHHHHHHHhcC-CCceEEEEeCcccccchhHHHH-HHHhCCCccc
Confidence 456777788888877655565553311 113345676644222222 4569999986553 3444 6779999999
Q ss_pred CCeEEEEeCC--ccccCCCCCCCCCChhHHHHHHHH
Q psy9502 397 LPVLRLDDYK--HIYRLPSLITLAENPSTLVSIVED 430 (493)
Q Consensus 397 ~P~ivi~~~~--~~y~~~~~~~~~~~~~~l~~Fi~d 430 (493)
.|++.+.... .--.||. .+..+.++|+.|+..
T Consensus 84 fPv~~LF~~~~~~pv~~p~--~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPF--DGDVTADNLQRFVKS 117 (126)
T ss_dssp -SEEEEEESSTTSEEEE-T--CS-S-HHHHHHHHHH
T ss_pred CCEEEEecCCCCCCccCCc--cCCccHHHHHHHHHh
Confidence 9998887643 3344553 556678999999975
No 362
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=70.41 E-value=24 Score=26.28 Aligned_cols=72 Identities=14% Similarity=0.321 Sum_probs=41.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC--CccccccCccccCceEEEEe--CCeeeeeeccc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE--EPRIRDFFHITKYPTLKIIR--NGLATRSEYRS 213 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Ptl~~f~--~g~~~~~~y~G 213 (493)
+..|+.+.|++|++.+-.+.+. ++.+-.++.+. ..++ +.-+-...|++..=. +|...
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~------------gi~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l------ 62 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH------------GIPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL------ 62 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC------------CCceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE------
Confidence 3568889999999988666553 34333344332 1122 223345688875421 12211
Q ss_pred CCCHHHHHHHHHHHcC
Q psy9502 214 QRTTEALLNFIAEELK 229 (493)
Q Consensus 214 ~~~~~~l~~fi~~~~~ 229 (493)
.....|++|+.+.++
T Consensus 63 -~eS~~I~~yL~~~~~ 77 (77)
T cd03040 63 -VDSSVIISTLKTYLG 77 (77)
T ss_pred -EcHHHHHHHHHHHcC
Confidence 255688999887653
No 363
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=70.03 E-value=1.6 Score=40.35 Aligned_cols=24 Identities=8% Similarity=-0.171 Sum_probs=20.8
Q ss_pred ecceeeeehhHHHHHHHhhhhhhhhhhhc
Q psy9502 14 SVEWVNRKTYSVIALVLANRESKILLRAA 42 (493)
Q Consensus 14 ~~~~~~v~Fyap~~~~~~C~hCk~l~p~~ 42 (493)
.+++.+||||+.. |+||.++.|.+
T Consensus 36 ~~~~~VvEffdy~-----CphC~~~~~~l 59 (207)
T PRK10954 36 AGEPQVLEFFSFY-----CPHCYQFEEVY 59 (207)
T ss_pred CCCCeEEEEeCCC-----CccHHHhcccc
Confidence 3567889999999 99999998865
No 364
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=69.40 E-value=15 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=15.8
Q ss_pred EEEcCCChhHhhhhHHHHHH
Q psy9502 140 NFYADWCRFCHLLKPVLEET 159 (493)
Q Consensus 140 ~Fya~wC~~C~~l~p~~~~~ 159 (493)
.++.++|++|++.+-.+...
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~ 22 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK 22 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc
Confidence 57788999999887776654
No 365
>PRK15000 peroxidase; Provisional
Probab=69.38 E-value=1.9 Score=39.71 Aligned_cols=31 Identities=10% Similarity=-0.160 Sum_probs=25.6
Q ss_pred ecceeeeehhHH-HHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYSV-IALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fyap-~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.++|+++-||+. | |+.|...+|.+.+..+-+
T Consensus 33 ~gk~vvL~F~p~~~-----t~vC~~El~~l~~~~~~f 64 (200)
T PRK15000 33 NGKTTVLFFWPMDF-----TFVCPSELIAFDKRYEEF 64 (200)
T ss_pred CCCEEEEEEECCCC-----CCCCHHHHHHHHHHHHHH
Confidence 578999999994 9 999999999987654333
No 366
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=67.45 E-value=67 Score=26.20 Aligned_cols=104 Identities=19% Similarity=0.198 Sum_probs=73.5
Q ss_pred EEcccccHHHHHcC--CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccc----cCccc
Q psy9502 120 KYLRQNNFTEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD----FFHIT 193 (493)
Q Consensus 120 ~~l~~~nf~~~l~~--~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~ 193 (493)
..|+.+|+-++-.. ++..+|.|--+-.+.-.+|.+++.++|+.... ++++.|.-||-+.-+-+.. .|+|.
T Consensus 4 rkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~----np~LsiIWIDPD~FPllv~yWektF~ID 79 (120)
T cd03074 4 RKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTD----NPDLSIIWIDPDDFPLLVPYWEKTFGID 79 (120)
T ss_pred hhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCc----CCCceEEEECCccCchhhHHHHhhcCcc
Confidence 34666666665533 46888889888899999999999999998764 3589999999988765543 45554
Q ss_pred -cCceEEEEeCCee--eeeecccC---CCHHHHHHHHHHH
Q psy9502 194 -KYPTLKIIRNGLA--TRSEYRSQ---RTTEALLNFIAEE 227 (493)
Q Consensus 194 -~~Ptl~~f~~g~~--~~~~y~G~---~~~~~l~~fi~~~ 227 (493)
.-|.|-+..-... +..+-.+. .++++|.+||...
T Consensus 80 l~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 80 LFRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred cCCCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 2499888753322 22333343 6889999999763
No 367
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=67.38 E-value=6.4 Score=33.48 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=52.5
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc----cCceEEEEeCCeeeeeec
Q psy9502 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT----KYPTLKIIRNGLATRSEY 211 (493)
Q Consensus 136 ~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Ptl~~f~~g~~~~~~y 211 (493)
.-++.|++|.|+-|......++. ..+.+-.+..+.-..+-++++|. +=-|.+ .+|.. .
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~------------~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~V--I~Gy~----v 87 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA------------NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAV--INGYY----V 87 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh------------CCcEEEEeecCcHHHHHHhcCCChhhccccEEE--EcCEE----E
Confidence 45677999999999876665552 15677777777767777788875 334443 34542 4
Q ss_pred ccCCCHHHHHHHHHHHc
Q psy9502 212 RSQRTTEALLNFIAEEL 228 (493)
Q Consensus 212 ~G~~~~~~l~~fi~~~~ 228 (493)
.|-..++++..++.+.-
T Consensus 88 EGHVPa~aI~~ll~~~p 104 (149)
T COG3019 88 EGHVPAEAIARLLAEKP 104 (149)
T ss_pred eccCCHHHHHHHHhCCC
Confidence 68889999999988743
No 368
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.15 E-value=16 Score=29.29 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=45.0
Q ss_pred HHHHHcCCCeEEEEEE---cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc-cccCceE-EEE
Q psy9502 127 FTEVLSQYKLAVVNFY---ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH-ITKYPTL-KII 201 (493)
Q Consensus 127 f~~~l~~~~~~lV~Fy---a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Ptl-~~f 201 (493)
+++.+++++.+|-+=- .|-|+++.+...++..+ |.+.++.||.-+++++.+... ...+||+ -+|
T Consensus 8 I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~-----------g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLy 76 (105)
T COG0278 8 IQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSAC-----------GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLY 76 (105)
T ss_pred HHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHc-----------CCcceeEEeeccCHHHHhccHhhcCCCCCceee
Confidence 4445655554443322 56899998776666553 237899999999988877553 3456776 466
Q ss_pred eCCee
Q psy9502 202 RNGLA 206 (493)
Q Consensus 202 ~~g~~ 206 (493)
-+|+.
T Consensus 77 i~GEf 81 (105)
T COG0278 77 VNGEF 81 (105)
T ss_pred ECCEE
Confidence 77763
No 369
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=66.85 E-value=2.3 Score=38.99 Aligned_cols=27 Identities=7% Similarity=-0.209 Sum_probs=23.3
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
...+.+++.|..|. |+||+++.+.+.+
T Consensus 75 ~~~~~~i~~f~D~~-----Cp~C~~~~~~l~~ 101 (197)
T cd03020 75 GNGKRVVYVFTDPD-----CPYCRKLEKELKP 101 (197)
T ss_pred CCCCEEEEEEECCC-----CccHHHHHHHHhh
Confidence 34688999999999 9999999988754
No 370
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=66.19 E-value=16 Score=26.85 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=39.7
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-ccccccCccccCceEEEEeCCeeeeeecccCCCH
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-PRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTT 217 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~ 217 (493)
..|+.++|++|++.+-.+++..- ......+|.... +.+.+.......|++. .+|... ...
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi----------~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l-------~es 62 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV----------SVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL-------YES 62 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC----------ccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE-------EcH
Confidence 46788999999988777655422 222333443322 2333444456788764 344322 345
Q ss_pred HHHHHHHHHH
Q psy9502 218 EALLNFIAEE 227 (493)
Q Consensus 218 ~~l~~fi~~~ 227 (493)
.+|++|+.+.
T Consensus 63 ~aI~~yL~~~ 72 (73)
T cd03059 63 RIIMEYLDER 72 (73)
T ss_pred HHHHHHHHhh
Confidence 6788887653
No 371
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=65.72 E-value=21 Score=27.29 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=48.6
Q ss_pred EEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCC-----ccccCCCCCC
Q psy9502 342 LILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK-----HIYRLPSLIT 416 (493)
Q Consensus 342 lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~-----~~y~~~~~~~ 416 (493)
+++|..+++ ..+......+++... ...+.+-.+|....+.+ ...+|. +.|++.+.+.+ ..-.
T Consensus 2 l~l~~k~~C-~LC~~a~~~L~~~~~--~~~~~l~~vDI~~d~~l-~~~Y~~---~IPVl~~~~~~~~~~~~~~~------ 68 (81)
T PF05768_consen 2 LTLYTKPGC-HLCDEAKEILEEVAA--EFPFELEEVDIDEDPEL-FEKYGY---RIPVLHIDGIRQFKEQEELK------ 68 (81)
T ss_dssp EEEEE-SSS-HHHHHHHHHHHHCCT--TSTCEEEEEETTTTHHH-HHHSCT---STSEEEETT-GGGCTSEEEE------
T ss_pred EEEEcCCCC-ChHHHHHHHHHHHHh--hcCceEEEEECCCCHHH-HHHhcC---CCCEEEEcCcccccccceeC------
Confidence 456666665 778888877765332 23488888888877777 788885 69999998732 1111
Q ss_pred CCCChhHHHHHHH
Q psy9502 417 LAENPSTLVSIVE 429 (493)
Q Consensus 417 ~~~~~~~l~~Fi~ 429 (493)
...+.+.|.+||+
T Consensus 69 ~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 69 WRFDEEQLRAWLE 81 (81)
T ss_dssp SSB-HHHHHHHHH
T ss_pred CCCCHHHHHHHhC
Confidence 1235688888874
No 372
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=65.49 E-value=1.5 Score=32.20 Aligned_cols=21 Identities=10% Similarity=-0.288 Sum_probs=17.2
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
++-|+++| |++|..+.+.+++
T Consensus 2 v~l~~~~~-----c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPD-----CPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCC-----ChhHHHHHHHHHH
Confidence 36789999 9999998877654
No 373
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=63.54 E-value=15 Score=26.08 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc--ccccCccccCceEEE
Q psy9502 140 NFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR--IRDFFHITKYPTLKI 200 (493)
Q Consensus 140 ~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~--l~~~~~i~~~Ptl~~ 200 (493)
.|+.++|++|.+..-.+....- .+....++-..... +-+..+-..+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i----------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL----------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC----------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5788999999988777766521 23333333322211 333455667898753
No 374
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=62.81 E-value=2.4 Score=38.62 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=26.4
Q ss_pred ecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.++|+++-|| +.| |+.|...+|.+.+..+.+.
T Consensus 30 ~Gk~vvL~F~P~~~-----~p~C~~el~~l~~~~~~f~ 62 (187)
T PRK10382 30 EGRWSVFFFYPADF-----TFVCPTELGDVADHYEELQ 62 (187)
T ss_pred CCCeEEEEEECCCC-----CCcCHHHHHHHHHHHHHHH
Confidence 4679999999 999 9999999999877644443
No 375
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=62.41 E-value=10 Score=31.20 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=42.9
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcc----ccccCccccCceEEEEeCCeeeeee--cc
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR----IRDFFHITKYPTLKIIRNGLATRSE--YR 212 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Ptl~~f~~g~~~~~~--y~ 212 (493)
..|+.++|+.|++....+++- ++.+-.+|..+++. +.+-.+-.+.|...+++........ -.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 69 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLK 69 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcc
Confidence 468899999999888776652 67777788766542 2222223334544455433321100 11
Q ss_pred c---CCCHHHHHHHHHHH
Q psy9502 213 S---QRTTEALLNFIAEE 227 (493)
Q Consensus 213 G---~~~~~~l~~fi~~~ 227 (493)
+ ..+.+++++.+.++
T Consensus 70 ~~~~~~s~~e~~~~l~~~ 87 (111)
T cd03036 70 DKLPSLSEEEALELLSSD 87 (111)
T ss_pred cccccCCHHHHHHHHHhC
Confidence 1 23556677777664
No 376
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=61.97 E-value=32 Score=25.28 Aligned_cols=68 Identities=16% Similarity=0.238 Sum_probs=38.1
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----CccccccCccccCceEEEEeCCeeeeeecccC
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE----EPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
..|+.++|++|++.+-.+.+..- .+....+|..+ .+++.+.......|++.. +|...
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi----------~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~l------- 62 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL----------ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGFVL------- 62 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC----------CCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCEEE-------
Confidence 46889999999877766665421 23333444322 134444445567899853 34322
Q ss_pred CCHHHHHHHHH
Q psy9502 215 RTTEALLNFIA 225 (493)
Q Consensus 215 ~~~~~l~~fi~ 225 (493)
....+|++|+.
T Consensus 63 ~es~aI~~yL~ 73 (74)
T cd03045 63 WESHAILIYLV 73 (74)
T ss_pred EcHHHHHHHHh
Confidence 23346666653
No 377
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=61.11 E-value=12 Score=31.90 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=25.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
+..|+.+||+.|++....+++- +|.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------------CCCcEEeeccCCh
Confidence 4578899999999877665542 6777777776553
No 378
>KOG2603|consensus
Probab=60.26 E-value=1e+02 Score=30.19 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCceeecChhcHHHHHhcC-Cc--EEEEEEeCC----C---cchHHHHHHHHHHHh--hhcCC--cEEEE
Q psy9502 310 RLVQWFTEKCVPLVREITYENAEEISEEG-RP--LLILCHRHG----D---LTSVAIFKRIVRDTI--GQYAQ--NLSFV 375 (493)
Q Consensus 310 ~l~~wi~~~~~P~v~elt~~n~~~l~~~~-~p--~lilf~~~~----d---~~~~~~~~~~~~~~~--~~~~~--~i~f~ 375 (493)
++.+-+.-.+-..|-.++.+++..+...+ ++ ++++|.... + .+..++|.-.++.-. ....+ ++-|+
T Consensus 29 kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~ 108 (331)
T KOG2603|consen 29 KVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC 108 (331)
T ss_pred HHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE
Confidence 34444443445567788999999887642 22 444554422 1 122344433322211 11123 78999
Q ss_pred EEeCcccchhhhhccCCCCCCCCeEEEEeCC--c------cccCCCCCCCCCChhHHHHHHHHHHc
Q psy9502 376 TADDLFYQRIFYHHLHLSSDDLPVLRLDDYK--H------IYRLPSLITLAENPSTLVSIVEDYFS 433 (493)
Q Consensus 376 ~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~--~------~y~~~~~~~~~~~~~~l~~Fi~d~~s 433 (493)
.+|.++-++. .+.|++. .+|.+++.++. + ++.... -...+++.+|+++.-.
T Consensus 109 ~Vd~~e~p~~-Fq~l~ln--~~P~l~~f~P~~~n~~~s~~~d~~~~----g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 109 MVDYDESPQV-FQQLNLN--NVPHLVLFSPAKGNKKRSDQMDQQDL----GFEAEQIAQFVADRTK 167 (331)
T ss_pred EEeccccHHH-HHHhccc--CCCeEEEeCCCccccccCccchhhhc----chhHHHHHHHHHHhhh
Confidence 9999999999 8999885 89999998763 1 222111 1237899999998654
No 379
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=59.16 E-value=12 Score=30.35 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=25.2
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
..|+.|||+.|++....+++- ++.+-.+|..+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------------~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------------GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------------CCCeEEEecccCC
Confidence 468999999999877766652 5667777776653
No 380
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=59.04 E-value=15 Score=32.91 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=25.9
Q ss_pred EEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCC
Q psy9502 140 NFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181 (493)
Q Consensus 140 ~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~ 181 (493)
+|..|+|++|-.+.|.|.++...+ +..|.+-.|-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~------~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEY------GNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-------TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHc------CCcEEEEEEEcc
Confidence 589999999999999999999998 345666555443
No 381
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=58.85 E-value=2.6 Score=32.06 Aligned_cols=21 Identities=10% Similarity=-0.236 Sum_probs=18.1
Q ss_pred eehhHHHHHHHhhhhhhhhhhhccCc
Q psy9502 20 RKTYSVIALVLANRESKILLRAAQGL 45 (493)
Q Consensus 20 v~Fyap~~~~~~C~hCk~l~p~~~~~ 45 (493)
+-|+++| |++|+.+...+++.
T Consensus 3 ~~y~~~~-----Cp~C~~~~~~l~~~ 23 (82)
T cd03419 3 VVFSKSY-----CPYCKRAKSLLKEL 23 (82)
T ss_pred EEEEcCC-----CHHHHHHHHHHHHc
Confidence 6688999 99999999888664
No 382
>KOG1672|consensus
Probab=58.84 E-value=74 Score=28.94 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCceeecC-hhcHHHHHhcCCcEEEEEEeCCC--cchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchh
Q psy9502 309 SRLVQWFTEKCVPLVREIT-YENAEEISEEGRPLLILCHRHGD--LTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRI 385 (493)
Q Consensus 309 ~~l~~wi~~~~~P~v~elt-~~n~~~l~~~~~p~lilf~~~~d--~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~ 385 (493)
+....|+.+ ...-++++. ...+.+.......+++-||.++- .+.++.-.++++ +.|- ...|+.+++..-|-+
T Consensus 55 ~kr~~~~~~-GhG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LA---k~h~-eTrFikvnae~~PFl 129 (211)
T KOG1672|consen 55 EKRKEWLSK-GHGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILA---KRHV-ETRFIKVNAEKAPFL 129 (211)
T ss_pred HHHHHHHHc-CCceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHH---Hhcc-cceEEEEecccCcee
Confidence 445556654 556677777 45555666555678888988763 245555555555 4533 489999999987766
Q ss_pred hhhccCCCCCCCCeEEEEeCCc-c-cc--CCC-CCCCCCChhHHHHHHHHHHcCCccc
Q psy9502 386 FYHHLHLSSDDLPVLRLDDYKH-I-YR--LPS-LITLAENPSTLVSIVEDYFSGKLHA 438 (493)
Q Consensus 386 ~l~~lgi~~~~~P~ivi~~~~~-~-y~--~~~-~~~~~~~~~~l~~Fi~d~~sGkl~~ 438 (493)
+..|+|. -+|++++...+. + |. |.+ +..|-++.+.|++=| ..||-+..
T Consensus 130 -v~kL~Ik--VLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL--~~S~vi~~ 182 (211)
T KOG1672|consen 130 -VTKLNIK--VLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRL--AKSGVIDY 182 (211)
T ss_pred -eeeeeee--EeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHH--hhccceec
Confidence 8889884 799999887753 2 22 221 123556667776644 34665543
No 383
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=57.36 E-value=14 Score=30.62 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=26.2
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
..|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN------------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------------CCceEEEecCCCh
Confidence 368999999999888777662 6777788877654
No 384
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=56.78 E-value=32 Score=25.92 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=44.6
Q ss_pred EEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 137 AVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 137 ~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
.|-.|-+..-+.+++......++.+... .+...+=.||..+++.+++.++|-..||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-----GGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-----CCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 3445555555666666666666655553 46899999999999999999999999997643
No 385
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=56.23 E-value=3.5 Score=35.87 Aligned_cols=39 Identities=13% Similarity=0.061 Sum_probs=27.2
Q ss_pred ceeEEEEEeecceeeeehhHH-HHHHHhhhhhhhhhhhccCchHHH
Q psy9502 5 THVKLVEVESVEWVNRKTYSV-IALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 5 ~~~~~~~~~~~~~~~v~Fyap-~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
+.+++-.. .+++++|-||+. | |+.|...++.+.+..+.+
T Consensus 21 ~~~~l~~~-~gk~~ll~f~~~~~-----~p~C~~~~~~l~~~~~~~ 60 (154)
T PRK09437 21 EQVSLTDF-QGQRVLVYFYPKAM-----TPGCTVQACGLRDNMDEL 60 (154)
T ss_pred CEEeHHHh-CCCCEEEEEECCCC-----CCchHHHHHHHHHHHHHH
Confidence 34444443 567889999975 7 888999998876654333
No 386
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=56.17 E-value=31 Score=33.35 Aligned_cols=149 Identities=16% Similarity=0.146 Sum_probs=89.9
Q ss_pred CCCCccccccCccccCceEEEEeCCeeeeeecc-c-CCCHHHHHHHHHHHcCCCcccCCCchhhhcc----C---CceEE
Q psy9502 180 CDEEPRIRDFFHITKYPTLKIIRNGLATRSEYR-S-QRTTEALLNFIAEELKDPVMDLEEAPKFNVH----D---KTLML 250 (493)
Q Consensus 180 ~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~-G-~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~----~---~~~vv 250 (493)
|+-.++.+++++|.-.|--+.+. |+ .|. | ..+.+++.+.+.+....+-....+..++.+. . ..+++
T Consensus 9 ~dl~~~~~~~~~I~vvPl~I~~~-~~----~y~D~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~ 83 (275)
T TIGR00762 9 ADLPPELIEEYGITVVPLTVIID-GK----TYRDGVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLS 83 (275)
T ss_pred cCCCHHHHHHcCCEEEEEEEEEC-CE----EeecCCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 34446778899999999887765 43 242 2 4788999999976433333334455554322 2 34555
Q ss_pred EEecCCCCchhHHHHHHHhhhccCCcceEeeeccCCCCCc---eEEecCCCcccccCcCChHHHHHHHHHhcCCceeecC
Q psy9502 251 GRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAGPPD---VTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREIT 327 (493)
Q Consensus 251 ~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~~p~---ivf~~~~~~~~y~g~~~~~~l~~wi~~~~~P~v~elt 327 (493)
.-.+..-+..|.....+|+.+. + ..+.+.-......+ ++..- ........+.++|.+|+.+..--...-++
T Consensus 84 i~iSs~lSgty~~a~~aa~~~~--~-~~i~ViDS~~~s~~~g~~v~~a---~~~~~~G~s~~eI~~~l~~~~~~~~~~f~ 157 (275)
T TIGR00762 84 IHLSSGLSGTYQSARQAAEMVD--E-AKVTVIDSKSASMGLGLLVLEA---AKLAEEGKSLEEILAKLEELRERTKLYFV 157 (275)
T ss_pred EEcCCchhHHHHHHHHHHhhCC--C-CCEEEECChHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHhhcEEEEE
Confidence 5566677888999998888875 3 23333222211111 11111 01112224568999999987777777788
Q ss_pred hhcHHHHHhcCC
Q psy9502 328 YENAEEISEEGR 339 (493)
Q Consensus 328 ~~n~~~l~~~~~ 339 (493)
.+++..|..+|+
T Consensus 158 v~~L~~L~~gGR 169 (275)
T TIGR00762 158 VDTLEYLVKGGR 169 (275)
T ss_pred ECcHHHHHhcCC
Confidence 888888877654
No 387
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=56.07 E-value=2.1 Score=33.34 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=19.2
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccCch
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQGLE 46 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~~~ 46 (493)
++.|+.+. |+||..+.|...+..
T Consensus 1 i~~f~d~~-----Cp~C~~~~~~l~~~~ 23 (98)
T cd02972 1 IVEFFDPL-----CPYCYLFEPELEKLL 23 (98)
T ss_pred CeEEECCC-----CHhHHhhhHHHHHHH
Confidence 36789999 999999999886644
No 388
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=55.72 E-value=13 Score=33.71 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=34.3
Q ss_pred ccccccCccccCceEEEEeCCeeeeeeccc--CCCHHHHHHHHHHHc
Q psy9502 184 PRIRDFFHITKYPTLKIIRNGLATRSEYRS--QRTTEALLNFIAEEL 228 (493)
Q Consensus 184 ~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G--~~~~~~l~~fi~~~~ 228 (493)
..++++.++.+|||+.+-++|+... .=.| -.+.++++.++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~-l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYV-LGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEe-ccCCcccCCcHHHHHHHHHHH
Confidence 4688999999999999999998754 2345 356788888887754
No 389
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=53.28 E-value=1.9e+02 Score=27.68 Aligned_cols=113 Identities=12% Similarity=0.044 Sum_probs=64.4
Q ss_pred CCCCcEEcccccHHHHHcCCCeEEEEEEcCCC--hhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCcccccc---
Q psy9502 115 NTTRVKYLRQNNFTEVLSQYKLAVVNFYADWC--RFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF--- 189 (493)
Q Consensus 115 ~~~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC--~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~--- 189 (493)
+.+....|++.+-+-+-+=.+++-|.+|.+-- ..-..+.+...++-++++... +|+|.+-.||-+.+++..++
T Consensus 5 T~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s--~g~i~v~~iDp~~~~~~~~~~~~ 82 (271)
T PF09822_consen 5 TANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYS--PGKIKVEFIDPDENPSEAEEKAK 82 (271)
T ss_pred CCCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhC--CCceEEEEECCCCChHHHHHHHH
Confidence 44667778876655443335677776665531 112344455555556665554 45899999999777766665
Q ss_pred -Ccccc----------------CceEEEEeCCeeeeeeccc----CCCHHHHHHHHHHHcC
Q psy9502 190 -FHITK----------------YPTLKIIRNGLATRSEYRS----QRTTEALLNFIAEELK 229 (493)
Q Consensus 190 -~~i~~----------------~Ptl~~f~~g~~~~~~y~G----~~~~~~l~~fi~~~~~ 229 (493)
+||+. |+.+++-..++...+.+.. ..-..+|..-|.+.+.
T Consensus 83 ~~Gi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~E~~lt~aI~~v~~ 143 (271)
T PF09822_consen 83 EYGIQPVQIEIVDNGKASIVTVYGGIVVEYGDREEVIPFLDSMSEFNLEYELTSAIRRVTS 143 (271)
T ss_pred hcCCCccceeecccccccceeecCeEEEEECCeEEEeecccccccccHHHHHHHHHHHHhc
Confidence 77765 6666664444443333332 1223445555544443
No 390
>PRK12559 transcriptional regulator Spx; Provisional
Probab=50.57 E-value=24 Score=29.99 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=24.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
++.|+.++|+.|++....+++. ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------------CCCeEEEEeeCCc
Confidence 4578999999999876555542 5666667766553
No 391
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=50.08 E-value=27 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=25.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~ 183 (493)
+..|+.++|+.|++....+++. ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------------gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------------QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------------CCceEEEecCCC
Confidence 3468889999999888777663 566677777655
No 392
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=49.30 E-value=18 Score=26.48 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=30.8
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC----CccccccCccccCceEEE
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE----EPRIRDFFHITKYPTLKI 200 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Ptl~~ 200 (493)
..|+.++|++|++.+-.+.+..- ......++... .+++.+...-...|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l----------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI----------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC----------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46788999999998887766522 23333444321 123334344557898854
No 393
>PRK13599 putative peroxiredoxin; Provisional
Probab=48.99 E-value=5.7 Score=37.01 Aligned_cols=32 Identities=6% Similarity=-0.028 Sum_probs=25.5
Q ss_pred eccee-eeehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWV-NRKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~-~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.++|+ |+-|++.| |+.|..-+|.+.+..+.+.
T Consensus 27 ~Gk~vVL~~~pa~~-----tpvCt~El~~l~~~~~~f~ 59 (215)
T PRK13599 27 AGKWFVLFSHPADF-----TPVCTTEFVEFARKANDFK 59 (215)
T ss_pred CCCeEEEEEeCCCC-----CCcCHHHHHHHHHHHHHHH
Confidence 35675 78999999 9999999999877654443
No 394
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=48.20 E-value=6.3 Score=36.14 Aligned_cols=31 Identities=13% Similarity=0.041 Sum_probs=23.9
Q ss_pred ecceeeeehhH-HHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNRKTYS-VIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v~Fya-p~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.++|+++-||+ .| |.+|...++.+.+..+.+
T Consensus 35 ~Gk~~lL~F~p~~~-----~~~C~~e~~~l~~~~~~f 66 (199)
T PTZ00253 35 KGKWVVLFFYPLDF-----TFVCPTEIIQFSDSVKRF 66 (199)
T ss_pred CCCEEEEEEEcCCC-----CCcCHHHHHHHHHHHHHH
Confidence 36899999995 89 999999988776543333
No 395
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=47.52 E-value=16 Score=35.53 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=84.9
Q ss_pred CccccccCccccCceEEEEeCCeeeeeec-cc-CCCHHHHHHHHHHHcCCCcccCCCchhhhcc----C----CceEEEE
Q psy9502 183 EPRIRDFFHITKYPTLKIIRNGLATRSEY-RS-QRTTEALLNFIAEELKDPVMDLEEAPKFNVH----D----KTLMLGR 252 (493)
Q Consensus 183 ~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y-~G-~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~----~----~~~vv~f 252 (493)
.+++.++++|.-.|--+.+.+ + .| +| +.+.+++.+.+.+.-..+-..-.+..++.++ . ..+++.-
T Consensus 13 ~~~~~~~~~i~vvPl~i~~~~-~----~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i~ 87 (280)
T PF02645_consen 13 PPELAEEYGIYVVPLNIIIDG-K----EYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVIT 87 (280)
T ss_dssp -HHHHHHTTEEEE--EEEETT-E----EEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CHHHHHhCCeEEEeEEEecCC-e----EEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 357788999999998877654 3 35 44 6799999999977554443444455555422 1 4466677
Q ss_pred ecCCCCchhHHHHHHHhhhccCCcceEeeeccCCCCCc---eEEecCCCcccccCcCChHHHHHHHHHhcCCceeecChh
Q psy9502 253 FNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAGPPD---VTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYE 329 (493)
Q Consensus 253 f~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~~p~---ivf~~~~~~~~y~g~~~~~~l~~wi~~~~~P~v~elt~~ 329 (493)
.++..+..|+....+|+.+. +..+.+.-......+ ++.+-- ...=.| .+.++|.+|+++..--...-++.+
T Consensus 88 iSs~LSgty~~a~~aa~~~~---~~~i~ViDS~~~s~g~g~lv~~a~--~l~~~G-~s~~ei~~~l~~~~~~~~~~f~~~ 161 (280)
T PF02645_consen 88 ISSGLSGTYNSARLAAKMLP---DIKIHVIDSKSVSAGQGLLVLEAA--KLIEQG-KSFEEIVEKLEELRERTRTYFVVD 161 (280)
T ss_dssp S-TTT-THHHHHHHHHHHHT---TTEEEEEE-SS-HHHHHHHHHHHH--HHHHTT---HHHHHHHHHHHHHTEEEEEEES
T ss_pred CCcchhhHHHHHHHHHhhcC---cCEEEEEeCCCcchhhhHHHHHHH--HHHHcC-CCHHHHHHHHHHHHhhceEEEEec
Confidence 77888999999999999982 334433332221111 111110 011122 355899999998887777778888
Q ss_pred cHHHHHhcC
Q psy9502 330 NAEEISEEG 338 (493)
Q Consensus 330 n~~~l~~~~ 338 (493)
+++.|..+|
T Consensus 162 ~L~~L~kgG 170 (280)
T PF02645_consen 162 DLKYLRKGG 170 (280)
T ss_dssp -SHHHHHCT
T ss_pred hHHHHHHCC
Confidence 888887765
No 396
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=47.35 E-value=26 Score=29.77 Aligned_cols=45 Identities=20% Similarity=0.344 Sum_probs=35.0
Q ss_pred CccccccCccccCceEEEEeCCe-----------eeeeecccCCCHHHHHHHHHHHc
Q psy9502 183 EPRIRDFFHITKYPTLKIIRNGL-----------ATRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 183 ~~~l~~~~~i~~~Ptl~~f~~g~-----------~~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
+|.+.++|+|+..|++++..++. ... .-.|..+.+.-++.+.+..
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d-~v~Gdvsl~~ALe~ia~~g 115 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYD-VVYGNVSLKGALEKMAQDG 115 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCee-EEEecccHHHHHHHHHHhC
Confidence 58999999999999999998774 111 3468888888888777643
No 397
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=46.08 E-value=5.2 Score=30.93 Aligned_cols=23 Identities=9% Similarity=-0.363 Sum_probs=19.3
Q ss_pred eeehhHHHHHHHhhhhhhhhhhhccCch
Q psy9502 19 NRKTYSVIALVLANRESKILLRAAQGLE 46 (493)
Q Consensus 19 ~v~Fyap~~~~~~C~hCk~l~p~~~~~~ 46 (493)
++-|..|| |++|+.....++++.
T Consensus 3 v~iy~~~~-----C~~C~~a~~~L~~l~ 25 (85)
T PRK11200 3 VVIFGRPG-----CPYCVRAKELAEKLS 25 (85)
T ss_pred EEEEeCCC-----ChhHHHHHHHHHhhc
Confidence 46688999 999999999887754
No 398
>PRK09301 circadian clock protein KaiB; Provisional
Probab=45.19 E-value=53 Score=26.56 Aligned_cols=75 Identities=12% Similarity=0.005 Sum_probs=55.4
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccC
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQ 214 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~ 214 (493)
.++|=.|.|..-+.+++......++.+... .|...+=.||..+++.+++.++|-..||++=-.++-. .+.-|+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l-----~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~--rriiGD 78 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEF-----KGVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPV--RKIIGD 78 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCc--ceeecc
Confidence 466777888887888777777777665542 4568888999999999999999999999764433322 246677
Q ss_pred CC
Q psy9502 215 RT 216 (493)
Q Consensus 215 ~~ 216 (493)
.+
T Consensus 79 ls 80 (103)
T PRK09301 79 LS 80 (103)
T ss_pred cc
Confidence 54
No 399
>PRK13190 putative peroxiredoxin; Provisional
Probab=44.78 E-value=7.6 Score=35.74 Aligned_cols=31 Identities=13% Similarity=-0.005 Sum_probs=23.9
Q ss_pred ecceeee-ehhHHHHHHHhhhhhhhhhhhccCchHHH
Q psy9502 14 SVEWVNR-KTYSVIALVLANRESKILLRAAQGLEDWF 49 (493)
Q Consensus 14 ~~~~~~v-~Fyap~~~~~~C~hCk~l~p~~~~~~~~~ 49 (493)
.++|+++ -|++.| |+.|..-++.+.+..+-+
T Consensus 26 ~gk~vvL~~~p~~~-----cp~C~~El~~l~~~~~~f 57 (202)
T PRK13190 26 KGKWVLLFSHPADF-----TPVCTTEFIAFSRRYEDF 57 (202)
T ss_pred CCCEEEEEEEcCCC-----CCCCHHHHHHHHHHHHHH
Confidence 3677765 689999 999999999887654333
No 400
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=44.07 E-value=61 Score=25.38 Aligned_cols=74 Identities=12% Similarity=0.012 Sum_probs=53.2
Q ss_pred eEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCC
Q psy9502 136 LAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQR 215 (493)
Q Consensus 136 ~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~ 215 (493)
++|=.|.|..-+.+++......++.+... .|...+-.||..+++.+++.++|-..||++=-.++-. .+.-|+.
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l-----~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~--rriiGdl 76 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEF-----QGVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPV--RKIIGDL 76 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhc-----CCceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCc--ceeeccc
Confidence 45556777777777777766666655442 4568888999999999999999999999864433322 2466765
Q ss_pred C
Q psy9502 216 T 216 (493)
Q Consensus 216 ~ 216 (493)
+
T Consensus 77 s 77 (87)
T TIGR02654 77 S 77 (87)
T ss_pred c
Confidence 4
No 401
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=43.57 E-value=49 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeC
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINC 180 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~ 180 (493)
+.+++|.+-..+|.+|..-...++.|..+|..++ -.+|.|..||-
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g--~~~I~f~vVN~ 70 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEG--LSNISFMVVNH 70 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCC--CCceEEEEEcC
Confidence 4688899999999999999999999999998775 46888888873
No 402
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=42.16 E-value=98 Score=25.31 Aligned_cols=80 Identities=4% Similarity=0.023 Sum_probs=46.8
Q ss_pred eeecChhcHHHHHhcCCcEEEEEEeCCC-cchHHHHHHHHHHHh-hhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeE
Q psy9502 323 VREITYENAEEISEEGRPLLILCHRHGD-LTSVAIFKRIVRDTI-GQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVL 400 (493)
Q Consensus 323 v~elt~~n~~~l~~~~~p~lilf~~~~d-~~~~~~~~~~~~~~~-~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~i 400 (493)
+++++.+++......+...+++|..... ........ .+.-++ +.+.+.+..+.++...-... ...+|+. ..|++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~Dva-VILPEL~~af~~~~~~avv~~~~e~~L-~~r~gv~--~~PaL 86 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVA-VILPELVKAFPGRFRGAVVARAAERAL-AARFGVR--RWPAL 86 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHH-HHHHHHHCTSTTSEEEEEEEHHHHHHH-HHHHT-T--SSSEE
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccce-eEcHHHHHhhhCccceEEECchhHHHH-HHHhCCc--cCCeE
Confidence 4566777788877765555555543211 11111111 122233 67788899888885555555 7889985 79999
Q ss_pred EEEeCC
Q psy9502 401 RLDDYK 406 (493)
Q Consensus 401 vi~~~~ 406 (493)
++...+
T Consensus 87 vf~R~g 92 (107)
T PF07449_consen 87 VFFRDG 92 (107)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 987665
No 403
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=42.06 E-value=2e+02 Score=23.75 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=49.6
Q ss_pred HhcCCcEEEEEEeCCCcchHHHHHHH-HHHH-h-hhcCCcEEEEEEeCccc-chhhhhccCCCCCCCCeEEEEeCC-ccc
Q psy9502 335 SEEGRPLLILCHRHGDLTSVAIFKRI-VRDT-I-GQYAQNLSFVTADDLFY-QRIFYHHLHLSSDDLPVLRLDDYK-HIY 409 (493)
Q Consensus 335 ~~~~~p~lilf~~~~d~~~~~~~~~~-~~~~-~-~~~~~~i~f~~~d~~~~-~~~~l~~lgi~~~~~P~ivi~~~~-~~y 409 (493)
-.++++++|.++++... ....|-+. +... . +-...++.+.-.|...- .+.+...|+.. ..|.+++...+ ...
T Consensus 14 k~e~K~llVylhs~~~~-~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~--~~P~~~~l~~~~~~~ 90 (116)
T cd02991 14 KQELRFLLVYLHGDDHQ-DTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRER--TYPFLAMIMLKDNRM 90 (116)
T ss_pred HhhCCEEEEEEeCCCCc-cHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCC--CCCEEEEEEecCCce
Confidence 35567788888876532 22222211 1110 0 11234566666676632 23324667764 89999887543 221
Q ss_pred c-CCCCCCCCCChhHHHHHHHHHHc
Q psy9502 410 R-LPSLITLAENPSTLVSIVEDYFS 433 (493)
Q Consensus 410 ~-~~~~~~~~~~~~~l~~Fi~d~~s 433 (493)
. ... ..+..+++.+..-++.+.+
T Consensus 91 ~vv~~-i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGR-LEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEE-EeCCCCHHHHHHHHHHHHh
Confidence 1 111 2445677888877776654
No 404
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=42.03 E-value=2.1e+02 Score=25.04 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=36.0
Q ss_pred cEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 119 v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
+..++++.+.----.++++||.=.|+-|++-.++ ..++.|.++++++ ++.+..+-|.+
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~-----Gf~VLgFPcNQ 67 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDK-----GFEVLGFPCNQ 67 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhC-----CcEEEeccccc
Confidence 4455554443322457899999999999975422 2345555555544 67777777765
No 405
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=40.74 E-value=6.8 Score=28.35 Aligned_cols=20 Identities=10% Similarity=-0.208 Sum_probs=16.9
Q ss_pred eehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 20 RKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 20 v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
+-|.++| |++|+.+...+++
T Consensus 3 ~ly~~~~-----Cp~C~~~~~~L~~ 22 (72)
T cd02066 3 VVFSKST-----CPYCKRAKRLLES 22 (72)
T ss_pred EEEECCC-----CHHHHHHHHHHHH
Confidence 5578899 9999999988765
No 406
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=39.71 E-value=57 Score=26.89 Aligned_cols=45 Identities=18% Similarity=0.417 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeC
Q psy9502 151 LLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRN 203 (493)
Q Consensus 151 ~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~ 203 (493)
.+.++...+.+.+.+... . .+..-++.+.++|+|+..|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~---~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDP---C-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCC---C-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 677877777777755431 1 22223589999999999999998877
No 407
>PRK13191 putative peroxiredoxin; Provisional
Probab=39.46 E-value=9.6 Score=35.50 Aligned_cols=32 Identities=6% Similarity=-0.036 Sum_probs=25.2
Q ss_pred ecceeee-ehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNR-KTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v-~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.++|+++ -|++.| |+.|...+|.+.+..+-+.
T Consensus 32 ~GK~vvLff~pa~f-----tpvC~tEl~~l~~~~~ef~ 64 (215)
T PRK13191 32 KGRWFVLFSHPGDF-----TPVCTTEFYSFAKKYEEFK 64 (215)
T ss_pred CCCcEEEEEeCCCC-----CCcCHHHHHHHHHHHHHHH
Confidence 4677665 889999 9999999999977644443
No 408
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=38.60 E-value=8.6 Score=36.29 Aligned_cols=27 Identities=7% Similarity=-0.095 Sum_probs=22.5
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
..++.+++.|.-|- |++|+.+.+.+.+
T Consensus 105 ~~~k~~I~vFtDp~-----CpyCkkl~~~l~~ 131 (232)
T PRK10877 105 PQEKHVITVFTDIT-----CGYCHKLHEQMKD 131 (232)
T ss_pred CCCCEEEEEEECCC-----ChHHHHHHHHHHH
Confidence 35678899999999 9999999877543
No 409
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=38.46 E-value=11 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.026 Sum_probs=24.3
Q ss_pred cee-eeehhHHHHHHHhhhhhhhhhhhccCchHHHHH
Q psy9502 16 EWV-NRKTYSVIALVLANRESKILLRAAQGLEDWFEL 51 (493)
Q Consensus 16 ~~~-~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~ 51 (493)
+|+ ++-|++.| |+.|...+|.+.+..+.+..
T Consensus 26 k~vvlf~~pa~~-----cp~C~~el~~l~~~~~~f~~ 57 (203)
T cd03016 26 SWGILFSHPADF-----TPVCTTELGAFAKLAPEFKK 57 (203)
T ss_pred CEEEEEEecCCC-----CCcCHHHHHHHHHHHHHHHH
Confidence 565 56899999 99999999999876544443
No 410
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=37.43 E-value=1.3e+02 Score=21.65 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=15.9
Q ss_pred EEEEcCCChhHhhhhHHHHHH
Q psy9502 139 VNFYADWCRFCHLLKPVLEET 159 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~ 159 (493)
..|+.+.|++|.+.+-.+.+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~ 22 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALL 22 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHc
Confidence 457889999998877666554
No 411
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=37.30 E-value=10 Score=36.37 Aligned_cols=32 Identities=13% Similarity=-0.159 Sum_probs=25.5
Q ss_pred ecceeeeehh-HHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVNRKTY-SVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~v~Fy-ap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.++|+++-|| +.| |+.|..-+|.+.+..+-+.
T Consensus 97 kgk~vVL~FyPa~f-----tpvCt~El~~l~~~~~ef~ 129 (261)
T PTZ00137 97 KDSYGLLVFYPLDF-----TFVCPSELLGFSERLKEFE 129 (261)
T ss_pred CCCeEEEEEECCCC-----CCCCHHHHHHHHHHHHHHH
Confidence 4678888888 899 9999999999977644443
No 412
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=37.28 E-value=16 Score=32.78 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=15.4
Q ss_pred ccccccCccccCceEEEEeCC-eeeeeecccCCCHHH
Q psy9502 184 PRIRDFFHITKYPTLKIIRNG-LATRSEYRSQRTTEA 219 (493)
Q Consensus 184 ~~l~~~~~i~~~Ptl~~f~~g-~~~~~~y~G~~~~~~ 219 (493)
..++++++|+++||+++|... ....+...|..+.+.
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~~ 173 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYEV 173 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE-------------------
T ss_pred HHHHHHcCCCCCCEEEEEecccccccccccccccccc
Confidence 368899999999999999822 112223556555443
No 413
>KOG3170|consensus
Probab=36.75 E-value=2.7e+02 Score=25.53 Aligned_cols=86 Identities=7% Similarity=0.055 Sum_probs=46.8
Q ss_pred CCCcccCCCchhhhccC----CceEEEEecCCCCch----hHHHHHHHhhhccCCcceEeeeccCCC--------CCc-e
Q psy9502 229 KDPVMDLEEAPKFNVHD----KTLMLGRFNSKNSPE----YELFSRVCSTFNHFDVCKCFARFRHAG--------PPD-V 291 (493)
Q Consensus 229 ~~~~~~i~s~~~l~~~~----~~~vv~ff~~~~~~~----~~~f~~~A~~l~~~~~~~f~~~~~~~~--------~p~-i 291 (493)
-..|.+|+-.+-.++.. ..|||+-.....-+. ...+..+|..| ..+.|..+.+... .|| +
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kf---p~iKFVki~at~cIpNYPe~nlPTl~ 166 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKF---PQIKFVKIPATTCIPNYPESNLPTLL 166 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcC---CcceEEecccccccCCCcccCCCeEE
Confidence 34566665444444433 566665444433333 45566777776 5888887766432 778 6
Q ss_pred EEecCC------CcccccCcCCh-HHHHHHHHH
Q psy9502 292 TLQTED------HTEAFQGVFER-SRLVQWFTE 317 (493)
Q Consensus 292 vf~~~~------~~~~y~g~~~~-~~l~~wi~~ 317 (493)
||..+. ....+-|.-.. +++..++-+
T Consensus 167 VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 167 VYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred EeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 777776 22334443333 555554433
No 414
>PHA03075 glutaredoxin-like protein; Provisional
Probab=36.27 E-value=58 Score=26.88 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHHHHHH
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEETAAI 162 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~~a~~ 162 (493)
+.++|.|-.|.|+-|......+.++..+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede 29 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE 29 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc
Confidence 4689999999999999888887555443
No 415
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=36.20 E-value=1.3e+02 Score=26.79 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=36.8
Q ss_pred CCCeEEEEEEcCCC-hhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 133 QYKLAVVNFYADWC-RFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 133 ~~~~~lV~Fya~wC-~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
.+++++|.|.-+.| ..|-.....+.++.+.+.+.. .++.+..|..+=
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~---~~v~~v~ISvDP 98 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEG---KDVQFVFISVDP 98 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTT---TTEEEEEEESST
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhcc---CceEEEEEEeCC
Confidence 47899999988888 589999999999999997762 367777777663
No 416
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=35.92 E-value=59 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=24.4
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~ 184 (493)
+..|+.++|+.|++....+++ .+|.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~------------~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA------------HQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH------------cCCCeEEEECCCCC
Confidence 346888999999986655544 16777777776553
No 417
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=35.54 E-value=65 Score=32.24 Aligned_cols=88 Identities=14% Similarity=0.205 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCC-CCCeEEEEEeCCCCc---cccccCccc-cC-ceEEEEeCCeee
Q psy9502 134 YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQ-DNQVVVAQINCDEEP---RIRDFFHIT-KY-PTLKIIRNGLAT 207 (493)
Q Consensus 134 ~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~-~~~v~~~~vd~~~~~---~l~~~~~i~-~~-Ptl~~f~~g~~~ 207 (493)
.++-+| .||-|-+..=.+.++++++++.... ...+.+|.+=|.-|. .--..+||. +- -...+|++|+..
T Consensus 264 ~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v 338 (359)
T PF04551_consen 264 RGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVV 338 (359)
T ss_dssp SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEE
T ss_pred CCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEE
Confidence 455555 3888888887788888888776532 237899999999873 122356776 33 358899999987
Q ss_pred eeec-ccCCCHHHHHHHHHHH
Q psy9502 208 RSEY-RSQRTTEALLNFIAEE 227 (493)
Q Consensus 208 ~~~y-~G~~~~~~l~~fi~~~ 227 (493)
. .. ..+.-.+.|++-|+++
T Consensus 339 ~-k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 339 K-KVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp E-EE-CSTCHHHHHHHHHHHH
T ss_pred E-ecCCHHHHHHHHHHHHHhh
Confidence 6 55 7777788888887764
No 418
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=35.19 E-value=2.3e+02 Score=23.49 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=53.0
Q ss_pred HHHHcCCCeEEEEEE-cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEE-eCCCCc-----------cccccCcccc
Q psy9502 128 TEVLSQYKLAVVNFY-ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI-NCDEEP-----------RIRDFFHITK 194 (493)
Q Consensus 128 ~~~l~~~~~~lV~Fy-a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~v-d~~~~~-----------~l~~~~~i~~ 194 (493)
++....+++++| |- ++..+.-+.....+.+....+.+. +|.+..+ +-.... .+.++|++..
T Consensus 4 ~~~~w~~R~lvv-~aps~~d~~~~~q~~~L~~~~~~l~eR-----di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~ 77 (118)
T PF13778_consen 4 DQFRWKNRLLVV-FAPSADDPRYQQQLEELQNNRCGLDER-----DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPP 77 (118)
T ss_pred hHhcCcCceEEE-ECCCCCCHHHHHHHHHHHhhhhccccC-----ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCC
Confidence 333444555444 43 234444555556666655555443 5555555 333333 5777888642
Q ss_pred -CceEEEE-eCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 195 -YPTLKII-RNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 195 -~Ptl~~f-~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
.-++++. ++|.... ++.+..+.++|.+.|..
T Consensus 78 ~~f~~vLiGKDG~vK~-r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 78 GGFTVVLIGKDGGVKL-RWPEPIDPEELFDTIDA 110 (118)
T ss_pred CceEEEEEeCCCcEEE-ecCCCCCHHHHHHHHhC
Confidence 2344455 5565543 79999999999998865
No 419
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=34.14 E-value=26 Score=31.06 Aligned_cols=35 Identities=9% Similarity=-0.074 Sum_probs=21.8
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhh-hccCchHHHHHhh
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLR-AAQGLEDWFELLE 53 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p-~~~~~~~~~~~~~ 53 (493)
...++++|..++.| |+-|+.|+- .+++ .+..+.++
T Consensus 35 ~e~KpIfl~ig~~~-----C~wChvM~~esf~d-~eVa~~lN 70 (163)
T PF03190_consen 35 KENKPIFLSIGYSW-----CHWCHVMERESFSD-PEVAEYLN 70 (163)
T ss_dssp HHT--EEEEEE-TT------HHHHHHHHHTTT--HHHHHHHH
T ss_pred hcCCcEEEEEEecC-----CcchhhhcccCcCC-HHHHHHHh
Confidence 35789999999999 999999985 5554 34444443
No 420
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=33.80 E-value=1e+02 Score=25.21 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCC
Q psy9502 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182 (493)
Q Consensus 133 ~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~ 182 (493)
.++++||.=.|+.|+.-. -...++++.++++.. ++.+...-|.+
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~-----gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK-----GLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG-----TEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC-----CeEEEeeehHH
Confidence 478888888999999988 556889999999765 68888887865
No 421
>KOG2640|consensus
Probab=33.37 E-value=20 Score=34.88 Aligned_cols=118 Identities=12% Similarity=0.008 Sum_probs=64.9
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccCchHHHHHhhhcCCCc---------cc--ccceEEEecccccccCcCCC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQGLEDWFELLEECTMTS---------KE--RRKALRLYGNAFYKDHSSTM 81 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~~~~~~~i~~---------~~--~~~~~~~~~~~~~~~~~~~~ 81 (493)
+...+|-..||+.| |+-.+...|.+.-....+..+..+++++ .. +++|.++..+..- ...-
T Consensus 74 n~~~~vs~~fy~s~-----C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~---~~~~ 145 (319)
T KOG2640|consen 74 NKNDYVSLLFYASW-----CPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTC---PASY 145 (319)
T ss_pred ccCCcccccchhcc-----cCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecccc---chhh
Confidence 34678889999999 9988877777654333333222222211 11 2333333322220 1223
Q ss_pred CCCCChhhHHHHHHHHhccCCCCccCCCCCCCCCCCCcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHHHHHHHH
Q psy9502 82 GDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAA 161 (493)
Q Consensus 82 ~~~~~~~~l~~fi~~~~~~~~~~~~s~~~p~~~~~~~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~~~~~a~ 161 (493)
.+.++..+|.+|..++..-. +.+. +.+-.......+|.+||++...+.|...-+..
T Consensus 146 ~~~r~l~sLv~fy~~i~~~~------------------v~ie------~~d~~~~~~~~ry~~~~~~t~l~~p~~~~~~~ 201 (319)
T KOG2640|consen 146 RGERDLASLVNFYTEITPMS------------------VLIE------ILDCTSCLEPVRYVPEGGPTILLAPDGNLFTW 201 (319)
T ss_pred cccccHHHHHHHHHhhccch------------------hccc------ccCcccceeeeEeccccCcccccCcCCCcchh
Confidence 34567888888888874200 0011 11112256778999999988777776655544
Q ss_pred H
Q psy9502 162 I 162 (493)
Q Consensus 162 ~ 162 (493)
.
T Consensus 202 ~ 202 (319)
T KOG2640|consen 202 A 202 (319)
T ss_pred c
Confidence 3
No 422
>KOG2792|consensus
Probab=33.15 E-value=2e+02 Score=27.46 Aligned_cols=100 Identities=10% Similarity=0.215 Sum_probs=58.6
Q ss_pred EEcccccHHHHHcCCCeEEEEEEcCCCh-hHhhhhHHHHHHHHHHhhcCCCCCCe---EEEEEeCCCC------------
Q psy9502 120 KYLRQNNFTEVLSQYKLAVVNFYADWCR-FCHLLKPVLEETAAIVDTQYPQDNQV---VVAQINCDEE------------ 183 (493)
Q Consensus 120 ~~l~~~nf~~~l~~~~~~lV~Fya~wC~-~C~~l~p~~~~~a~~~~~~~~~~~~v---~~~~vd~~~~------------ 183 (493)
...|++||. ++.+|++|-=+.|+ -|-.-...+.++-+++.... +.. .|..||=...
T Consensus 130 k~~te~df~-----Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~---~~~~~PlFIsvDPeRD~~~~~~eY~~eF 201 (280)
T KOG2792|consen 130 KRVTEKDFL-----GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKP---GLPPVPLFISVDPERDSVEVVAEYVSEF 201 (280)
T ss_pred Ceecccccc-----cceEEEEecccCCCCcChHHHHHHHHHHHHHhccC---CCCccceEEEeCcccCCHHHHHHHHHhc
Confidence 344555542 67889999777776 46554444555555554442 222 5666665321
Q ss_pred --------------ccccccCccccC-------------ceEEEE---eCCeeeeeecccC-CCHHHHHHHHHHHcC
Q psy9502 184 --------------PRIRDFFHITKY-------------PTLKII---RNGLATRSEYRSQ-RTTEALLNFIAEELK 229 (493)
Q Consensus 184 --------------~~l~~~~~i~~~-------------Ptl~~f---~~g~~~~~~y~G~-~~~~~l~~fi~~~~~ 229 (493)
..+|++|.|.-- -||.+| +.|+-+ +|-|. ++++++.+=|.+++.
T Consensus 202 ~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fv--d~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 202 HPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFV--DYYGRNYDADELADSILKHVA 276 (280)
T ss_pred ChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCccee--hhhcccCCHHHHHHHHHHHHH
Confidence 246677765422 245555 345544 57774 899999988887764
No 423
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=27 Score=26.37 Aligned_cols=55 Identities=18% Similarity=0.125 Sum_probs=35.6
Q ss_pred EEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc----------------cccccCccccCceEEEEe
Q psy9502 139 VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----------------RIRDFFHITKYPTLKIIR 202 (493)
Q Consensus 139 V~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~----------------~l~~~~~i~~~Ptl~~f~ 202 (493)
++|+|.-|+.|..+..+++++ .+.+-.|+.+..- +-.+..+--+.|.+.+ .
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl------------~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~ 71 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL------------NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-D 71 (85)
T ss_pred eeeccccCcchHHHHHHHHHc------------CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-C
Confidence 689999999998887777765 5556666665431 1123445556788754 5
Q ss_pred CCee
Q psy9502 203 NGLA 206 (493)
Q Consensus 203 ~g~~ 206 (493)
+|+.
T Consensus 72 d~~v 75 (85)
T COG4545 72 DGKV 75 (85)
T ss_pred CCcE
Confidence 5554
No 424
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=31.38 E-value=2e+02 Score=20.77 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=33.6
Q ss_pred cCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHH
Q psy9502 143 ADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLN 222 (493)
Q Consensus 143 a~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~ 222 (493)
.+||++|.+..-.+... ++.+-.++++... + -.-..+|++.. +|... .....|++
T Consensus 13 ~s~sp~~~~v~~~L~~~------------~i~~~~~~~~~~~-~---~p~g~vP~l~~--~g~~l-------~es~~I~~ 67 (72)
T cd03054 13 PSLSPECLKVETYLRMA------------GIPYEVVFSSNPW-R---SPTGKLPFLEL--NGEKI-------ADSEKIIE 67 (72)
T ss_pred CCCCHHHHHHHHHHHhC------------CCceEEEecCCcc-c---CCCcccCEEEE--CCEEE-------cCHHHHHH
Confidence 35899998887776653 4545555544321 1 12336788753 34322 22367888
Q ss_pred HHHH
Q psy9502 223 FIAE 226 (493)
Q Consensus 223 fi~~ 226 (493)
|+.+
T Consensus 68 yL~~ 71 (72)
T cd03054 68 YLKK 71 (72)
T ss_pred HHhh
Confidence 8765
No 425
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.32 E-value=3.5e+02 Score=26.08 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=58.3
Q ss_pred hhcHHHHHhcCCc-EEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeC-
Q psy9502 328 YENAEEISEEGRP-LLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDY- 405 (493)
Q Consensus 328 ~~n~~~l~~~~~p-~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~- 405 (493)
++-+.++...+.+ ==.+|++.+-.++...++.++.+.+ +.-..-+.+|.. ++.. .--+ +++...|+++++-.
T Consensus 163 FelfrelL~~ng~~e~f~fl~~eiPe~FtRMraaa~sal---~~~t~av~mDsk-faav-~gal-~dpaa~palvVd~Gn 236 (342)
T COG4012 163 FELFRELLGANGCREDFMFLDDEIPESFTRMRAAAMSAL---SAGTDAVAMDSK-FAAV-MGAL-VDPAADPALVVDYGN 236 (342)
T ss_pred HHHHHHHHcCCCCcccceecCCcCchhHHHHHHHHHHHH---hcCceEEEEcch-hHhh-hhcc-cCcccCceEEEEccC
Confidence 3445555544322 2345555454566667776555443 212225556665 4444 2222 45566798888543
Q ss_pred Cccc-----------cCCCCCCCCCChhHHHHHHHHHHcCCcccc
Q psy9502 406 KHIY-----------RLPSLITLAENPSTLVSIVEDYFSGKLHAD 439 (493)
Q Consensus 406 ~~~y-----------~~~~~~~~~~~~~~l~~Fi~d~~sGkl~~~ 439 (493)
+|.- .|.. ..-...+++|+.+|..+..|+|.-+
T Consensus 237 gHttaalvdedRI~gv~EH-HT~~Lspekled~I~rf~~GeL~ne 280 (342)
T COG4012 237 GHTTAALVDEDRIVGVYEH-HTIRLSPEKLEDQIIRFVEGELENE 280 (342)
T ss_pred CceEEEEecCCeEEEEeec-ccccCCHHHHHHHHHHHHhcccccc
Confidence 2211 1111 2234678999999999999999755
No 426
>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]
Probab=31.31 E-value=17 Score=26.20 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=12.0
Q ss_pred HHhhhhhhhhhhhcc
Q psy9502 29 VLANRESKILLRAAQ 43 (493)
Q Consensus 29 ~~~C~hCk~l~p~~~ 43 (493)
..||.+|+.+.|.=.
T Consensus 4 ~kAC~~Ck~l~~~d~ 18 (64)
T COG2093 4 EKACKNCKRLTPEDT 18 (64)
T ss_pred hHHHhhccccCCCCC
Confidence 478999999988654
No 427
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=31.21 E-value=44 Score=29.86 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=28.6
Q ss_pred ccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHH
Q psy9502 184 PRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224 (493)
Q Consensus 184 ~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi 224 (493)
.....+++|.+.||+++ +|+ ..+.|....+.|.+.|
T Consensus 157 ~~~a~~~gv~GvP~~vv--~g~---~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLGVFGVPTFVV--NGK---YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTTCSSSSEEEE--TTT---EEEESCSSHHHHHHHH
T ss_pred HHHHHHcCCcccCEEEE--CCE---EEEECCCCHHHHHHHh
Confidence 35567899999999998 665 2488999888887765
No 428
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=29.66 E-value=1.2e+02 Score=30.07 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=59.4
Q ss_pred CChhHhhhhHHHHHHHHHHhhcCC-CCCCeEEEEEeCCCCc---cccccCcccc--CceEEEEeCCeeeeeecccCCCHH
Q psy9502 145 WCRFCHLLKPVLEETAAIVDTQYP-QDNQVVVAQINCDEEP---RIRDFFHITK--YPTLKIIRNGLATRSEYRSQRTTE 218 (493)
Q Consensus 145 wC~~C~~l~p~~~~~a~~~~~~~~-~~~~v~~~~vd~~~~~---~l~~~~~i~~--~Ptl~~f~~g~~~~~~y~G~~~~~ 218 (493)
-|+-|-+..-.+.+.++++.+... ....+.++.+-|--|. .--..+||.+ -|...+|.+|+... ...++.-++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~-~~~~~~~~e 341 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIK-KLPEEDIVE 341 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEE-ecChhhHHH
Confidence 499998887776666666655432 1345889999997762 2223456653 58999999999876 688888888
Q ss_pred HHHHHHHHHcC
Q psy9502 219 ALLNFIAEELK 229 (493)
Q Consensus 219 ~l~~fi~~~~~ 229 (493)
+|..-+.+...
T Consensus 342 el~~~i~~~~~ 352 (361)
T COG0821 342 ELEALIEAYAE 352 (361)
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 429
>PRK13189 peroxiredoxin; Provisional
Probab=29.14 E-value=19 Score=33.68 Aligned_cols=32 Identities=16% Similarity=0.022 Sum_probs=24.4
Q ss_pred ecceee-eehhHHHHHHHhhhhhhhhhhhccCchHHHH
Q psy9502 14 SVEWVN-RKTYSVIALVLANRESKILLRAAQGLEDWFE 50 (493)
Q Consensus 14 ~~~~~~-v~Fyap~~~~~~C~hCk~l~p~~~~~~~~~~ 50 (493)
.++|++ +-|++.| |+.|...++.+.+..+-+.
T Consensus 34 ~Gk~vvL~f~pa~f-----cpvC~tEl~~l~~~~~ef~ 66 (222)
T PRK13189 34 KGKWFVLFSHPADF-----TPVCTTEFVAFQKRYDEFR 66 (222)
T ss_pred CCCeEEEEEeCCCC-----CCCCHHHHHHHHHHHHHHH
Confidence 467665 5788999 9999999998877644333
No 430
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=28.14 E-value=3.3e+02 Score=22.17 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=38.8
Q ss_pred ChhcHHHHHhc--CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchh---hhhccCCCCCCCCeEE
Q psy9502 327 TYENAEEISEE--GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRI---FYHHLHLSSDDLPVLR 401 (493)
Q Consensus 327 t~~n~~~l~~~--~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~---~l~~lgi~~~~~P~iv 401 (493)
|.+.++++.+. .+|++|+=++..|.-+...+.+ +++.+....+.+.+.++|--.+... ....||+. -+-|++.
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~-~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~-HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALRE-FEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVK-HESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHH-HHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT-----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHH-HHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCC-cCCCcEE
Confidence 34566677665 6777777666666544333322 3333333244488888887754322 14669987 4578776
Q ss_pred EEeCCc
Q psy9502 402 LDDYKH 407 (493)
Q Consensus 402 i~~~~~ 407 (493)
+...+.
T Consensus 84 li~~g~ 89 (105)
T PF11009_consen 84 LIKNGK 89 (105)
T ss_dssp EEETTE
T ss_pred EEECCE
Confidence 666553
No 431
>KOG2507|consensus
Probab=27.52 E-value=3.8e+02 Score=27.53 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=61.3
Q ss_pred cCCCeEEEEEEcCCChhHhhhh-HHHHHHH-HHHhhcCCCCCCeEEEEEeCCCC--ccccccCccccCceEEEEe-CCee
Q psy9502 132 SQYKLAVVNFYADWCRFCHLLK-PVLEETA-AIVDTQYPQDNQVVVAQINCDEE--PRIRDFFHITKYPTLKIIR-NGLA 206 (493)
Q Consensus 132 ~~~~~~lV~Fya~wC~~C~~l~-p~~~~~a-~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Ptl~~f~-~g~~ 206 (493)
..++.+||.|-+.-......|. -.|.... .... ...++..+|+.... ..+..-|.+...|.+.++. .|.+
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-----s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtp 90 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-----SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTP 90 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-----hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCce
Confidence 4467899999999888888888 3454432 2221 22566667765432 3456678888899998875 4555
Q ss_pred eeeecccCCCHHHHHHHHHHHc
Q psy9502 207 TRSEYRSQRTTEALLNFIAEEL 228 (493)
Q Consensus 207 ~~~~y~G~~~~~~l~~fi~~~~ 228 (493)
.. .-.|..++++|..-|.+..
T Consensus 91 Le-vitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 91 LE-VITGFVTADELASSIEKVW 111 (506)
T ss_pred eE-EeeccccHHHHHHHHHHHH
Confidence 43 5688888999887776543
No 432
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=1.3e+02 Score=30.13 Aligned_cols=92 Identities=15% Similarity=0.165 Sum_probs=61.4
Q ss_pred ccccHHHHHc-CCCeEEEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEEEE
Q psy9502 123 RQNNFTEVLS-QYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII 201 (493)
Q Consensus 123 ~~~nf~~~l~-~~~~~lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~~f 201 (493)
..+-++++-+ ++..-|=-|++-.|..|-..-..++-++- - +++|.-..||..-..+=.+.-+|-..||+ |
T Consensus 104 ~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msv----l---Np~I~H~~IdGa~Fq~Evear~IMaVPtv--f 174 (520)
T COG3634 104 DQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSV----L---NPRIKHTAIDGALFQDEVEARNIMAVPTV--F 174 (520)
T ss_pred hHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHh----c---CCCceeEEecchhhHhHHHhccceecceE--E
Confidence 3333444432 34677778889999999665555554433 3 45898889998765544566689999996 4
Q ss_pred eCCeeeeeecccCCCHHHHHHHHHH
Q psy9502 202 RNGLATRSEYRSQRTTEALLNFIAE 226 (493)
Q Consensus 202 ~~g~~~~~~y~G~~~~~~l~~fi~~ 226 (493)
.+|+.. -+|..+.++|+.-+..
T Consensus 175 lnGe~f---g~GRmtleeilaki~~ 196 (520)
T COG3634 175 LNGEEF---GQGRMTLEEILAKIDT 196 (520)
T ss_pred Ecchhh---cccceeHHHHHHHhcC
Confidence 577632 2678888888876543
No 433
>KOG1422|consensus
Probab=27.10 E-value=1.6e+02 Score=27.25 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=43.5
Q ss_pred CChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCc-cccCceEEEEeCCeeeeeecccCCCHHHHHHH
Q psy9502 145 WCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFH-ITKYPTLKIIRNGLATRSEYRSQRTTEALLNF 223 (493)
Q Consensus 145 wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~-i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~f 223 (493)
.|++|+++.-.+. .+ .-...+-.||...-++-..... -..-|-+ .|.. . +..+.+.+.+|
T Consensus 20 dcpf~qr~~m~L~-----~k-----~~~f~vttVd~~~kp~~f~~~sp~~~~P~l-~~d~-~-------~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LK-----GVPFKVTTVDLSRKPEWFLDISPGGKPPVL-KFDE-K-------WVTDSDKIEEF 80 (221)
T ss_pred CChhHHHHHHHHH-----Hc-----CCCceEEEeecCCCcHHHHhhCCCCCCCeE-EeCC-c-------eeccHHHHHHH
Confidence 5999999888766 11 1257788889887765443332 2233332 2221 1 22577899999
Q ss_pred HHHHcCCCcc
Q psy9502 224 IAEELKDPVM 233 (493)
Q Consensus 224 i~~~~~~~~~ 233 (493)
+.+.+.++--
T Consensus 81 Lee~l~~p~~ 90 (221)
T KOG1422|consen 81 LEEKLPPPKL 90 (221)
T ss_pred HHHhcCCCCC
Confidence 9998876643
No 434
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=26.91 E-value=4.6e+02 Score=23.41 Aligned_cols=89 Identities=9% Similarity=0.066 Sum_probs=46.3
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCch-hhhccCCceEEEEecCCCCchhHHHHHHHhhhccC
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAP-KFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHF 274 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~-~l~~~~~~~vv~ff~~~~~~~~~~f~~~A~~l~~~ 274 (493)
.|+.+|..|+.. -+|.++.+++..-+++... .+..+.-.. .+..+.-..+++-++-...-. +..+|..+.
T Consensus 48 ~t~lIf~sGKiv---itGaks~~~~~~a~~~~~~-~L~~~g~~~~~~~~~~v~NIvas~~l~~~i~---L~~la~~~~-- 118 (174)
T cd00652 48 TTALIFSSGKMV---ITGAKSEEDAKLAARKYAR-ILQKLGFPVEKFPEFKVQNIVASCDLGFPIR---LEELALKHP-- 118 (174)
T ss_pred EEEEEECCCEEE---EEecCCHHHHHHHHHHHHH-HHHHcCCCccccCceEEEEEEEEEECCCccc---HHHHHhhhh--
Confidence 678889999864 6788888777665554332 111121100 112222344555554333333 556666554
Q ss_pred CcceEeeeccCCCCCceEEecCC
Q psy9502 275 DVCKCFARFRHAGPPDVTLQTED 297 (493)
Q Consensus 275 ~~~~f~~~~~~~~~p~ivf~~~~ 297 (493)
.++ .+....+|+++||..+
T Consensus 119 ~~~----~YePe~fpgli~r~~~ 137 (174)
T cd00652 119 ENA----SYEPELFPGLIYRMDE 137 (174)
T ss_pred ccc----EECCccCceEEEEecC
Confidence 232 2344456777766654
No 435
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.72 E-value=87 Score=27.98 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=23.7
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHH
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIV 163 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~ 163 (493)
+..|+.+.|++|-...+.++++++.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56788999999999999999999887
No 436
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=26.60 E-value=18 Score=34.13 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=29.3
Q ss_pred CccccccCccccCceEEEEeCCeeeeeecccCCCHHHHHHHHHHH
Q psy9502 183 EPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227 (493)
Q Consensus 183 ~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~ 227 (493)
+..+..+++|++.||+++ +|. .|.|..+.++|.+.|...
T Consensus 204 ~~~~a~~~gv~gTPt~~v--~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 204 NYKLAQQLGVNGTPTFIV--NGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHhcCCCcCCeEEE--CCe----eecCCCCHHHHHHHHHHh
Confidence 346788899999999865 333 377888888888877654
No 437
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.57 E-value=2e+02 Score=28.01 Aligned_cols=149 Identities=14% Similarity=0.128 Sum_probs=89.2
Q ss_pred eCCCCccccccCccccCceEEEEeCCeeeeeecc-c-CCCHHHHHHHHHHHcCCCcccCCCchhhhcc----C----Cce
Q psy9502 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYR-S-QRTTEALLNFIAEELKDPVMDLEEAPKFNVH----D----KTL 248 (493)
Q Consensus 179 d~~~~~~l~~~~~i~~~Ptl~~f~~g~~~~~~y~-G-~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~----~----~~~ 248 (493)
.|+-.+++.++++|.-.|--+.+.++ .|. | ..+.+++..-+...-..+-..-.+..++.+. . ..+
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~-----~y~D~~~l~~~~~~~~~~~~~~~p~TSqPs~~~~~~~~~~l~~~g~~~v 84 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGE-----SYFDGVELSPDQFYYEMAEKGELPKTSQPSPGEFEELFEKLLQKGYDEV 84 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCE-----EeeccccCCHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhCCCcEE
Confidence 45667788899999999977666543 243 3 4666665555555444444444455555432 2 246
Q ss_pred EEEEecCCCCchhHHHHHHHhhhccCCcceEeeeccCCC-CCc--eEEecCCCcccccCcCChHHHHHHHHHhcCCceee
Q psy9502 249 MLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAG-PPD--VTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVRE 325 (493)
Q Consensus 249 vv~ff~~~~~~~~~~f~~~A~~l~~~~~~~f~~~~~~~~-~p~--ivf~~~~~~~~y~g~~~~~~l~~wi~~~~~P~v~e 325 (493)
+....++.-+..|+. .++|..+. +...+.+.-+... ..- ++..- ....=.|. +.++|.+|+.+..-..-.-
T Consensus 85 i~i~iSs~LSgty~~-a~~a~~~~--~~~~v~viDS~~~s~~~g~~v~~a--~~l~~~G~-s~~ei~~~l~~~~~~t~~~ 158 (282)
T COG1307 85 ISIHISSGLSGTYQS-AQLAAELV--EGAKVHVIDSKSVSMGLGFLVLEA--AELAKAGK-SFEEILKKLEEIREKTKAY 158 (282)
T ss_pred EEEEcCCCccHHHHH-HHHHHHhc--cCceEEEEcCcchhhHHHHHHHHH--HHHHHcCC-CHHHHHHHHHHHHhhcEEE
Confidence 666677778888888 88888887 5444433322211 000 11110 01111233 3588999999988887777
Q ss_pred cChhcHHHHHhcC
Q psy9502 326 ITYENAEEISEEG 338 (493)
Q Consensus 326 lt~~n~~~l~~~~ 338 (493)
+.-+++..+..+|
T Consensus 159 ~~v~~L~~L~kgG 171 (282)
T COG1307 159 FVVDDLDNLVKGG 171 (282)
T ss_pred EEECchhHHHhCC
Confidence 7788888887665
No 438
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=25.97 E-value=2e+02 Score=22.14 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=30.2
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCC-ccccccCccccCceEEE
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE-PRIRDFFHITKYPTLKI 200 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Ptl~~ 200 (493)
+..|+.+.|++|++.+-.+.+..- .+.+..++.... +.+.+.......|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl----------~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI----------PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC----------CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 455778889999987666555311 233444443322 22444444567888863
No 439
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=25.62 E-value=22 Score=33.92 Aligned_cols=27 Identities=7% Similarity=-0.141 Sum_probs=22.0
Q ss_pred eecceeeeehhHHHHHHHhhhhhhhhhhhccC
Q psy9502 13 ESVEWVNRKTYSVIALVLANRESKILLRAAQG 44 (493)
Q Consensus 13 ~~~~~~~v~Fyap~~~~~~C~hCk~l~p~~~~ 44 (493)
...+.+++.|.=|- |++|+++.+...+
T Consensus 115 ~~ak~~I~vFtDp~-----CpyC~kl~~~l~~ 141 (251)
T PRK11657 115 ADAPRIVYVFADPN-----CPYCKQFWQQARP 141 (251)
T ss_pred CCCCeEEEEEECCC-----ChhHHHHHHHHHH
Confidence 35678889999999 9999999876543
No 440
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.79 E-value=1.1e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=20.4
Q ss_pred cCChHHHHHHHHHhcCCceeec-ChhcHHH
Q psy9502 305 VFERSRLVQWFTEKCVPLVREI-TYENAEE 333 (493)
Q Consensus 305 ~~~~~~l~~wi~~~~~P~v~el-t~~n~~~ 333 (493)
.+++++|.+|+.++.++.=... |.+.+-.
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~~~rd~Ll~ 32 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSAKTRDELLK 32 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 3577999999999998865544 4444433
No 441
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.31 E-value=5.2e+02 Score=23.12 Aligned_cols=89 Identities=10% Similarity=0.105 Sum_probs=46.1
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccCCceEEEEecCCCCchhHHHHHHHhhhccCC
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHFD 275 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~ 275 (493)
.|+.+|..|+.. .+|..+.++...-+++... .+..+.-...+.++.-..+|+-++-.-.-. +..+|.... .
T Consensus 48 ~t~lIF~SGKiv---iTGaks~e~a~~a~~~i~~-~L~~~g~~~~~~~~~v~Nivat~~l~~~i~---L~~la~~~~--~ 118 (174)
T cd04516 48 TTALIFSSGKMV---CTGAKSEDDSKLAARKYAR-IIQKLGFPAKFTDFKIQNIVGSCDVKFPIR---LEGLAHAHK--Q 118 (174)
T ss_pred EEEEEECCCeEE---EEecCCHHHHHHHHHHHHH-HHHHcCCCCCCCceEEEEEEEEEECCCccc---HHHHHHhCh--h
Confidence 467888998864 6898888876655544332 122221111222333345556554333332 445554332 2
Q ss_pred cceEeeeccCCCCCceEEecCC
Q psy9502 276 VCKCFARFRHAGPPDVTLQTED 297 (493)
Q Consensus 276 ~~~f~~~~~~~~~p~ivf~~~~ 297 (493)
. ..+....+|+++||..+
T Consensus 119 ~----~~YePE~fPgliyr~~~ 136 (174)
T cd04516 119 F----SSYEPELFPGLIYRMVK 136 (174)
T ss_pred c----cEeCCccCceEEEEecC
Confidence 1 23345557888877765
No 442
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.66 E-value=1.1e+02 Score=28.75 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCChhHhhhhHHHHH
Q psy9502 135 KLAVVNFYADWCRFCHLLKPVLEE 158 (493)
Q Consensus 135 ~~~lV~Fya~wC~~C~~l~p~~~~ 158 (493)
+..++.|....|++|++..|...+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 688899999999999777777766
No 443
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=22.81 E-value=1.1e+02 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.487 Sum_probs=24.1
Q ss_pred EEEEEcCCChhHhhhhHHHHHHHHHH
Q psy9502 138 VVNFYADWCRFCHLLKPVLEETAAIV 163 (493)
Q Consensus 138 lV~Fya~wC~~C~~l~p~~~~~a~~~ 163 (493)
++.|+..-|++|-...+.+.++.+.+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999887
No 444
>PLN00062 TATA-box-binding protein; Provisional
Probab=22.12 E-value=5.8e+02 Score=22.93 Aligned_cols=89 Identities=10% Similarity=0.097 Sum_probs=45.4
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCchhhhccCCceEEEEecCCCCchhHHHHHHHhhhccCC
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHFD 275 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~~~l~~~~~~~vv~ff~~~~~~~~~~f~~~A~~l~~~~ 275 (493)
.|+.+|..|+.. .+|..+.+++..-+++... -+..+.-.-.+.++.-..+|+-++-.-.-. +..+|.... .
T Consensus 48 ~t~lIF~SGKiv---iTGaks~e~a~~a~~~~~~-~L~~lg~~~~~~~f~v~NIvas~~l~~~i~---L~~la~~~~--~ 118 (179)
T PLN00062 48 TTALIFASGKMV---CTGAKSEHDSKLAARKYAR-IIQKLGFPAKFKDFKIQNIVGSCDVKFPIR---LEGLAYAHG--A 118 (179)
T ss_pred EEEEEECCCeEE---EEecCCHHHHHHHHHHHHH-HHHHcCCCcCCCccEEEEEEEEEECCCccc---HHHHHHhch--h
Confidence 578889999864 6888888777655544332 122221111112222345666654433333 444444322 2
Q ss_pred cceEeeeccCCCCCceEEecCC
Q psy9502 276 VCKCFARFRHAGPPDVTLQTED 297 (493)
Q Consensus 276 ~~~f~~~~~~~~~p~ivf~~~~ 297 (493)
. ..+....+|+++||..+
T Consensus 119 ~----~~YePE~fPgliyr~~~ 136 (179)
T PLN00062 119 F----SSYEPELFPGLIYRMKQ 136 (179)
T ss_pred h----cccCcccCceEEEEeCC
Confidence 2 22344457777777655
No 445
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=21.58 E-value=73 Score=24.64 Aligned_cols=51 Identities=16% Similarity=0.057 Sum_probs=38.8
Q ss_pred CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccccCceEE
Q psy9502 144 DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLK 199 (493)
Q Consensus 144 ~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Ptl~ 199 (493)
..-..+.+.......+.+... .+.+.+-.||..+++.+++.++|-..||++
T Consensus 6 g~~~~s~~a~~~l~~l~~~~l-----~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 6 GRTPSSERAIENLRRLCEEYL-----GGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp SBHHHHHHHHHHHHHHHHCHC-----TTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhC-----CCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 333445566666666665432 468999999999999999999999999985
No 446
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=21.53 E-value=2.7e+02 Score=26.59 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=24.5
Q ss_pred CcEEcccccHHHHHcCCCeEEEEEEcCCChhHhhhhHH
Q psy9502 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPV 155 (493)
Q Consensus 118 ~v~~l~~~nf~~~l~~~~~~lV~Fya~wC~~C~~l~p~ 155 (493)
....++..+ +..++++.++..-+.||++|-..+=.
T Consensus 45 ~~~kvsn~d---~~~~Gk~~v~~igw~gCP~~A~~sW~ 79 (249)
T PF06053_consen 45 NFFKVSNQD---LAPNGKPEVIFIGWEGCPYCAAESWA 79 (249)
T ss_pred ceeeecCcc---cCCCCeeEEEEEecccCccchhhHHH
Confidence 344444433 34667899999999999999765533
No 447
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.24 E-value=3.6e+02 Score=23.15 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=44.7
Q ss_pred CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEEEEeCCccc
Q psy9502 338 GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHIY 409 (493)
Q Consensus 338 ~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~ivi~~~~~~y 409 (493)
.+|-.++++|..+ ..+..+...+.+ ....+.+.|+.+.+..-... +...|++.++.=.++++..+..|
T Consensus 6 ~~p~~vvlyDG~C-~lC~~~vrfLi~--~D~~~~i~f~~~q~e~g~~~-l~~~~l~~~~~~s~~~~~~g~~~ 73 (137)
T COG3011 6 KKPDLVVLYDGVC-PLCDGWVRFLIR--RDQGGRIRFAALQSEPGQAL-LEAAGLDPEDVDSVLLVEAGQLL 73 (137)
T ss_pred CCCCEEEEECCcc-hhHHHHHHHHHH--hccCCcEEEEeccCchhhhH-HhhcCCChhhhheeeEecCCceE
Confidence 4678889999887 344444433332 22267799999998876666 88899987664455555554433
No 448
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=21.10 E-value=50 Score=26.88 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=36.9
Q ss_pred EEcCCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCccccccCccc--cCceEEE-EeCCeeeeeecccC
Q psy9502 141 FYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHIT--KYPTLKI-IRNGLATRSEYRSQ 214 (493)
Q Consensus 141 Fya~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Ptl~~-f~~g~~~~~~y~G~ 214 (493)
||..+|+.|......+..... .+.+.+..+.-.....+.+.++++ ..-+.+. ..+|+. .|.|.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d~--------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~---~~~G~ 67 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRDR--------GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGER---VYRGS 67 (114)
T ss_pred EECCCCHhHHHHHHHHHhcCC--------CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCCE---EEEcH
Confidence 789999999988877766511 235666655333333445666665 3444444 356652 25564
No 449
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.96 E-value=2.2e+02 Score=28.63 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=50.9
Q ss_pred CChhHhhhhHHHHHHHHHHhhcCCC-CCCeEEEEEeCCCC-c--cccccCcccc-CceEEEEeCCeeeeeecccCCCHHH
Q psy9502 145 WCRFCHLLKPVLEETAAIVDTQYPQ-DNQVVVAQINCDEE-P--RIRDFFHITK-YPTLKIIRNGLATRSEYRSQRTTEA 219 (493)
Q Consensus 145 wC~~C~~l~p~~~~~a~~~~~~~~~-~~~v~~~~vd~~~~-~--~l~~~~~i~~-~Ptl~~f~~g~~~~~~y~G~~~~~~ 219 (493)
-|+-|.+-.-....++.++.+...+ +..+.+|.+=|.-| + .-...+||.+ -+...+|.+|+... ...+..-.+.
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~-kv~~~~~~~~ 348 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIK-TLPEENIVEE 348 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEee-eeChHhHHHH
Confidence 3777777777777777666665432 23489999988633 1 1224466654 45678899998865 5666555555
Q ss_pred HHHHHHH
Q psy9502 220 LLNFIAE 226 (493)
Q Consensus 220 l~~fi~~ 226 (493)
|++-|.+
T Consensus 349 l~~~i~~ 355 (360)
T PRK00366 349 LEAEIEA 355 (360)
T ss_pred HHHHHHH
Confidence 5555543
No 450
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=20.54 E-value=6.2e+02 Score=22.62 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=45.0
Q ss_pred ceEEEEeCCeeeeeecccCCCHHHHHHHHHHHcCCCcccCCCc-hhhhccCCceEEEEecCCCCchhHHHHHHHhhhccC
Q psy9502 196 PTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEA-PKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHF 274 (493)
Q Consensus 196 Ptl~~f~~g~~~~~~y~G~~~~~~l~~fi~~~~~~~~~~i~s~-~~l~~~~~~~vv~ff~~~~~~~~~~f~~~A~~l~~~ 274 (493)
.|+.+|..|+.. -+|.++.++...-+.+...- +..+.-. .....+.-..+|+-++-...-. +..+|..+.
T Consensus 48 ~t~lIF~SGKiv---~tGaks~~~a~~a~~~~~~~-L~~~g~~~~~~~~~~i~NIVas~~l~~~i~---L~~la~~~~-- 118 (174)
T cd04518 48 IAALIFRSGKMV---CTGAKSVEDLHRAVKEIIKK-LKDYGIKVIEKPEIKVQNIVASADLGREVN---LDAIAIGLP-- 118 (174)
T ss_pred EEEEEECCCeEE---EEccCCHHHHHHHHHHHHHH-HHhcCCCccCCCceEEEEEEEEEEcCCccC---HHHHHhhCC--
Confidence 678889999864 68998888776666554321 1111100 0011111234555554333332 455555543
Q ss_pred CcceEeeeccCCCCCceEEecCC
Q psy9502 275 DVCKCFARFRHAGPPDVTLQTED 297 (493)
Q Consensus 275 ~~~~f~~~~~~~~~p~ivf~~~~ 297 (493)
+ ..+....+|+++||-.+
T Consensus 119 -~----~~YePe~fpglvyR~~~ 136 (174)
T cd04518 119 -N----AEYEPEQFPGLVYRLDE 136 (174)
T ss_pred -C----CccCcccCceEEEEecC
Confidence 1 33344456777766654
No 451
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=20.24 E-value=4.8e+02 Score=22.23 Aligned_cols=68 Identities=18% Similarity=0.082 Sum_probs=40.7
Q ss_pred hcCCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCe--EEEEeCCcc
Q psy9502 336 EEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPV--LRLDDYKHI 408 (493)
Q Consensus 336 ~~~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~--ivi~~~~~~ 408 (493)
++.+-++|-|-..+|. .+-..-+.+.+.+.+-++-..+..+|.++-+.+ .+.+.+. -|. +...+.+||
T Consensus 18 e~drvvViRFG~d~d~-~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdf-n~~yel~---dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDP-VCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDF-NQMYELY---DPCTVMFFFRNKHM 87 (133)
T ss_dssp -SSSEEEEEEE-TTSH-HHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCC-HHHTTS----SSEEEEEEETTEEE
T ss_pred cCceEEEEEeCCCCCc-cHHHHHHHHHHHHHHhhcceEEEEEEcccchhh-hcccccC---CCeEEEEEecCeEE
Confidence 4456667778877774 344444444444444355567778899988887 8888886 454 334355554
No 452
>KOG3414|consensus
Probab=20.23 E-value=5e+02 Score=21.97 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred CCcEEEEEEeCCCcchHHHHHHHHHHHhhhcCCcEEEEEEeCcccchhhhhccCCCCCCCCeEE-EEeCCccc-cCCCC-
Q psy9502 338 GRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLR-LDDYKHIY-RLPSL- 414 (493)
Q Consensus 338 ~~p~lilf~~~~d~~~~~~~~~~~~~~~~~~~~~i~f~~~d~~~~~~~~l~~lgi~~~~~P~iv-i~~~~~~y-~~~~~- 414 (493)
.+-++|=|-..+|. .+-..-+.+++.+...++-.....+|.++-+.+ .+.++++ +.|.++ +.+.+||- -+..+
T Consensus 23 ~rlvViRFGr~~Dp-~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~-~~~~~l~--~p~tvmfFfn~kHmkiD~gtgd 98 (142)
T KOG3414|consen 23 ERLVVIRFGRDWDP-TCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDF-VKMYELY--DPPTVMFFFNNKHMKIDLGTGD 98 (142)
T ss_pred ceEEEEEecCCCCc-hHhhHHHHHHHHHHHHhhceEEEEEecchhhhh-hhhhccc--CCceEEEEEcCceEEEeeCCCC
Confidence 34456667777773 333333334443333233345555677777777 8889985 556544 45555542 22210
Q ss_pred CCC----CCChhHHHHHHHHHHcCC
Q psy9502 415 ITL----AENPSTLVSIVEDYFSGK 435 (493)
Q Consensus 415 ~~~----~~~~~~l~~Fi~d~~sGk 435 (493)
.+. ..+++.+..-+.-+..|-
T Consensus 99 n~Kin~~~~~kq~~Idiie~iyRga 123 (142)
T KOG3414|consen 99 NNKINFAFEDKQEFIDIIETIYRGA 123 (142)
T ss_pred CceEEEEeccHHHHHHHHHHHHHhh
Confidence 011 124455555566655553
No 453
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.05 E-value=4.4e+02 Score=20.72 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=40.4
Q ss_pred CCChhHhhhhHHHHHHHHHHhhcCCCCCCeEEEEEeCCCCc-cccccCccccCceEEEEeCCeeeeeecccCCCHHHHHH
Q psy9502 144 DWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLN 222 (493)
Q Consensus 144 ~wC~~C~~l~p~~~~~a~~~~~~~~~~~~v~~~~vd~~~~~-~l~~~~~i~~~Ptl~~f~~g~~~~~~y~G~~~~~~l~~ 222 (493)
.+|++|++.+=.+.+.. -...+..||....+ .+.+.......|++. .+|... .+...|.+
T Consensus 20 g~cpf~~rvrl~L~eKg----------i~ye~~~vd~~~~p~~~~~~nP~g~vPvL~--~~~~~i-------~eS~~I~e 80 (91)
T cd03061 20 GNCPFCQRLFMVLWLKG----------VVFNVTTVDMKRKPEDLKDLAPGTQPPFLL--YNGEVK-------TDNNKIEE 80 (91)
T ss_pred CCChhHHHHHHHHHHCC----------CceEEEEeCCCCCCHHHHHhCCCCCCCEEE--ECCEEe-------cCHHHHHH
Confidence 47999998877665531 13344555554433 344444556789764 344322 35568999
Q ss_pred HHHHHcCC
Q psy9502 223 FIAEELKD 230 (493)
Q Consensus 223 fi~~~~~~ 230 (493)
|+.+...+
T Consensus 81 YLde~~~~ 88 (91)
T cd03061 81 FLEETLCP 88 (91)
T ss_pred HHHHHccC
Confidence 99886654
Done!