RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9502
(493 letters)
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 224 bits (571), Expect = 1e-68
Identities = 123/388 (31%), Positives = 194/388 (50%), Gaps = 21/388 (5%)
Query: 117 TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
+ + L N E+L+ +A+VNFYADWCRF +L P+ EE + ++ ++P +NQVV A
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFA 64
Query: 177 QINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLE 236
+++CD+ I + I+KYPTLK+ RNG+ + EYR QR+ +AL ++I ++ DP+ ++
Sbjct: 65 RVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIR 124
Query: 237 --EAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTF-NHFDV----CKCFARFRHAGPP 289
K ++G F K+S Y +F RV + + R++G
Sbjct: 125 DLAEITTLDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAFLSAFGDVSKPERYSGDN 184
Query: 290 DVTL---QTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLILCH 346
+ + + W +KCVPLVREIT+EN EE++EEG P LIL H
Sbjct: 185 IIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEELTEEGLPFLILFH 244
Query: 347 RHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYK 406
D S+ IF+ V + ++F+ AD ++ H+ + D PV+ +D ++
Sbjct: 245 MKEDTESLEIFQNEVARQLISEKGTINFLHADCDKFRHPL-LHIQKTPADCPVIAIDSFR 303
Query: 407 HIYRLPSLITLAENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRRRKAELQANVEDVFPI 466
H+Y P L V D SGKLH ++H G D A + +
Sbjct: 304 HMYVFGDF-KDVLIPGKLKQFVFDLHSGKLHREFHHGP----DPTDTAPGEQAQDVASS- 357
Query: 467 YELETESMFRNLTPSKLRYTLLK-KEEL 493
ES F+ L PS+ RYTLL+ ++EL
Sbjct: 358 ---PPESSFQKLAPSEYRYTLLRDRDEL 382
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 182 bits (462), Expect = 5e-53
Identities = 54/353 (15%), Positives = 129/353 (36%), Gaps = 37/353 (10%)
Query: 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFC------HLLKPVLEETAAIVDTQYPQDN 171
RV + N+ V +Y++ + ++ + + +LE A Q +D
Sbjct: 14 RVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAA-----QVLEDK 68
Query: 172 QVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDP 231
V ++ +++ + +T+ ++ + + EY + + + L+ F+ + L+DP
Sbjct: 69 GVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKED--EVIEYDGEFSADTLVEFLLDVLEDP 126
Query: 232 VMDL---EEAPKF-NVHDKTLMLGRFNSKNSPEYELFSRVCSTF-NHFDV----CKCFAR 282
V + E F N+ D+ ++G F +K+S Y+ F F + A+
Sbjct: 127 VELIEGERELQAFENIEDEIKLIGYFKNKDSEHYKAFKEAAEEFHPYIPFFATFDSKVAK 186
Query: 283 FRHAGPPDVTLQ---TEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGR 339
++ E+ +V + E +R++ E+ E E+
Sbjct: 187 KLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRSTLRKLKPESMYETWEDDM 246
Query: 340 PLLILCHRHGDLT-----SVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYH-----H 389
+ + + + I K + +D +LS + D + + +
Sbjct: 247 DGIHIVAFAEEADPDGYEFLEILKSVAQDNTDN--PDLSIIWIDPDDFPLLVPYWEKTFD 304
Query: 390 LHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLHADYHD 442
+ LS+ + V+ + D ++ + L +ED G+++ + D
Sbjct: 305 IDLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEGEINTEDDD 357
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 170 bits (432), Expect = 8e-49
Identities = 56/344 (16%), Positives = 125/344 (36%), Gaps = 29/344 (8%)
Query: 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT--QYPQDNQVVV 175
RV L + NF +VL +Y + + +Y + + + + +++ Q + +
Sbjct: 12 RVVSLTEKNFKQVLKKYDV-LCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGF 70
Query: 176 AQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDL 235
++ +E ++ + +L +++ E+ + + L+ F+ + ++DPV +
Sbjct: 71 VMVDAKKEAKLAKKLGFDEEGSLYVLKGD--RTIEFDGEFAADVLVEFLLDLIEDPVEII 128
Query: 236 ---EEAPKF-NVHDKTLMLGRFNSKNSPEYELFSRVCSTFN-----HFDVCKCFARFRHA 286
E F + D+ ++G F S+ S Y+ F F K A+
Sbjct: 129 NSKLEVQAFERIEDQIKLIGFFKSEESEYYKAFEEAAEHFQPYIKFFATFDKGVAKKLSL 188
Query: 287 GPPDVTLQ---TEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLI 343
+V ++ + LV++ E P +R + E+ E E+ +
Sbjct: 189 KMNEVDFYEPFMDEPIAIPDKPYTEEELVEFVKEHQRPTLRRLRPEDMFETWEDDLNGIH 248
Query: 344 LCHRHGDLTS-----VAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYH-----HLHLS 393
+ + I K++ RD +LS V D + + + + L
Sbjct: 249 IVAFAERSDPDGYEFLEILKQVARDNTDNP--DLSIVWIDPDDFPLLVAYWEKTFKIDLF 306
Query: 394 SDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLH 437
+ V+ + D ++ L +ED SGK++
Sbjct: 307 KPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSGKIN 350
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 147 bits (372), Expect = 4e-39
Identities = 62/341 (18%), Positives = 129/341 (37%), Gaps = 23/341 (6%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V L ++F E + + L + F+A WC C + P + A + + + +AQI
Sbjct: 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL-----VEKNITLAQI 70
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG-LATRSEYRSQRTTEALLNFIAEELKDPVMDLEE 237
+C E + +I +P+LKI +N + +Y RT EA++ F+ ++ + V + +
Sbjct: 71 DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVAD 130
Query: 238 AP--KFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAGP------- 288
P N T ++ + ++ F + + HF+ +
Sbjct: 131 LPAYLANETFVTPVIVQSGKIDADFNATFYSMAN--KHFNDYDFVSAENADDDFKLSIYL 188
Query: 289 PDVTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLILCHRH 348
P + + + + +W + +P EI + E G PL L +
Sbjct: 189 PSAMDEPVVYNGKKADIADADVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYND 248
Query: 349 GDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDLPVLRLDDYKHI 408
+ + +K + + + ++FV+ D + R + + P+ + D
Sbjct: 249 EE--ELEEYKPLFTELAKKNRGLMNFVSIDARKFGRHAGNLNM--KEQFPLFAIHDMTED 304
Query: 409 --YRLPSLITLAENPSTLVSIVEDYFSGKLHADYHDGNSEH 447
Y LP L A + + ++E L D+ G++
Sbjct: 305 LKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASP 345
Score = 94.9 bits (235), Expect = 6e-21
Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Query: 69 YGNAFYKDHSSTMGDSDHLT--SLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLRQNN 126
++ + D L ++ S V D+L + + N + V L N
Sbjct: 308 GLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKN 367
Query: 127 FTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
E V K +V +YA WC C L P +E A + V++A+++ E
Sbjct: 368 HDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTY---ANATSDVLIAKLDHTENDV 424
Query: 186 IRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAEELKDPVMDLEEAPKFN 242
I YPT+ + G + S Y+ R+ ++L +FI E V +
Sbjct: 425 RG--VVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKENGHFDVDGKALYEEAQ 480
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 133 bits (336), Expect = 3e-34
Identities = 62/368 (16%), Positives = 126/368 (34%), Gaps = 33/368 (8%)
Query: 117 TRVKYLRQNNFTEVLSQ---YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQV 173
+ V L +NF +S L +V F+A WC L P E A + V
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK------GIV 54
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233
+A+++C + + ++ YPTLKI R+G Y RT + +++ + ++ +
Sbjct: 55 PLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEA-GAYDGPRTADGIVSHLKKQAGPASV 113
Query: 234 DL---EEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCS------TFNHFDVCKCFARFR 284
L EE KF ++G F+ S + F + S F H +V +
Sbjct: 114 PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYD 173
Query: 285 HAGPPDVTLQTEDHTEAF--------QGVFERSRLVQWFTEKCVPLVREITYENAEEISE 336
G + + T F + ++ ++ E + +T +N + I
Sbjct: 174 DNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG 233
Query: 337 EGRPLLILCHRHGDLTSVA-----IFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLH 391
+ + + + + + + + V + F + L
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE 293
Query: 392 LSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRR 451
++ ++PV+ + K + + + L ++DYF G L +
Sbjct: 294 STAGEIPVVAIRTAKGEKFVMQ-EEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDG 352
Query: 452 RKAELQAN 459
+ A
Sbjct: 353 PVKVVVAE 360
Score = 98.8 bits (245), Expect = 3e-22
Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 7/197 (3%)
Query: 46 EDWFELLEECTMTSKERRKALRLYGNAFYKDHSSTMGDSDHLTSLSSHVDDWLLSRNPVL 105
+ + L + + S + A + S +L + D+
Sbjct: 281 KTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRY 340
Query: 106 CTHPLHYTNNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVD 164
+N VK + NF E V ++ K ++ FYA WC C L+P +E
Sbjct: 341 LKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELG---- 396
Query: 165 TQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNF 223
+ +D +V+A+++ + + + +PT+ +Y R +++
Sbjct: 397 EKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISY 455
Query: 224 IAEELKDPVMDLEEAPK 240
+ E +P + EE PK
Sbjct: 456 LQREATNPPVIQEEKPK 472
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 104 bits (262), Expect = 3e-27
Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V LR++NF E L+ +K +V FYA WC C L P + A + + +++ +A++
Sbjct: 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLK---AEGSEIRLAKV 65
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG-LATRSEYRSQRTTEALLNFIAEEL 228
+ EE + + + YPT+K RNG A+ EY + R + ++N++ +
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRT 116
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 101 bits (253), Expect = 1e-25
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V L NF ++ ++ FYA WC C P E+ A+ + D + VA+I
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLK---DNDPPIAVAKI 75
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEA 238
+ + F ++ YPT+KI++ G +Y RT E ++ + E + E
Sbjct: 76 DATSASMLASKFDVSGYPTIKILKKG--QAVDYDGSRTQEEIVAKVREVSQPDWTPPPEV 133
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 97.4 bits (243), Expect = 1e-24
Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 5/109 (4%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V L +NNF + +++ + + FYA WC C L P EE + ++P V +A++
Sbjct: 7 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELS---KKEFPGLAGVKIAEV 62
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
+C E I + + YPTL + R G SE+ R ++L F+ +
Sbjct: 63 DCTAERNICSKYSVRGYPTLLLFRGG-KKVSEHSGGRDLDSLHRFVLSQ 110
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 99.1 bits (247), Expect = 8e-24
Identities = 41/234 (17%), Positives = 80/234 (34%), Gaps = 29/234 (12%)
Query: 114 NNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQV 173
V L NF ++ ++ FYA WC C P E+ A I+ +D +
Sbjct: 12 KEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD---KDPPI 68
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233
VA+I+ + F ++ YPT+KI++ G +Y RT E ++ + E +
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKILKKG--QAVDYEGSRTQEEIVAKVREVSQPDWT 126
Query: 234 DLEEAP---------KFNVHDKTLMLGRFNSKNSPEYEL---FSRVCSTFNHFDVCKCFA 281
E + +++ + +L + + + A
Sbjct: 127 PPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLA 186
Query: 282 ------------RFRHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLV 323
RF +G P + + + + G E+ +V + E+
Sbjct: 187 KVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGAAA 240
Score = 88.7 bits (220), Expect = 3e-20
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 111 HYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQD 170
+T L + NF EV++ + +V FYA WC C L P E+ A + + P
Sbjct: 124 DWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSP-- 181
Query: 171 NQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230
+ +A+++ E + F ++ YPTLKI R G +Y R +++++ E+
Sbjct: 182 -PIPLAKVDATAETDLAKRFDVSGYPTLKIFRKG--RPYDYNGPREKYGIVDYMIEQSGA 238
Query: 231 PV 232
Sbjct: 239 AA 240
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 95.2 bits (237), Expect = 1e-23
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 119 VKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
V L +NF EV+ L +V FYA WC C L P ++ A + + V V
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK------DVVKVGA 72
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELK 229
+N D+ + + + +PT+KI +Y+ RT EA+++ L+
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR 124
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 94.0 bits (234), Expect = 3e-23
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 113 TNNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDN 171
+ ++ V L ++F + VL + +V FYA WC C L+P A+ V Q
Sbjct: 3 SGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQ--TKG 60
Query: 172 QVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD- 230
+V +A ++ + + I +PT+KI + G + +Y RT +++ + D
Sbjct: 61 KVKLAAVDATVNQVLASRYGIRGFPTIKIFQKG-ESPVDYDGGRTRSDIVSRALDLFSDN 119
Query: 231 --PVMDLEEAP 239
P LE P
Sbjct: 120 APPPELLESGP 130
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 93.5 bits (233), Expect = 5e-23
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 114 NNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQV 173
++ V+ + N+ E+L ++ FYA WC C L+P E A +D +V
Sbjct: 4 GSSGNVRVITDENWRELLE--GDWMIEFYAPWCPACQNLQPEWESFAEWG-----EDLEV 56
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233
+A+++ E+P + F I PT+ ++G Y+ RT + +NFI+++ +
Sbjct: 57 NIAKVDVTEQPGLSGRFIINALPTIYHCKDG--EFRRYQGPRTKKDFINFISDKEWKSIE 114
Query: 234 DLEE 237
+
Sbjct: 115 PVSS 118
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 93.3 bits (231), Expect = 3e-21
Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 34/247 (13%)
Query: 119 VKYLRQNNFTEVLSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
+ L +F + + ++V FYA WC C L + A + QV
Sbjct: 19 ISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAA----KRLDGVVQVAAVN 74
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNG----------------LATRSEYRSQRTTEALL 221
+ ++ + + + +PTL + R Y RT ++
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIV 134
Query: 222 NFIAEELKDPVMDL---EEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCS------TFN 272
+F ++ V + L + F+ ++ ++ + F
Sbjct: 135 DFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDK-ISPVYKSIALDWLGKFDFY 193
Query: 273 HFDVCKCFARFRHAGPPDVT---LQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYE 329
K + T + Q ++S+LV + +K E
Sbjct: 194 SISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSI 253
Query: 330 NAEEISE 336
N +IS+
Sbjct: 254 NKNDISK 260
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 86.7 bits (215), Expect = 1e-20
Identities = 28/131 (21%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 113 TNNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDN 171
+ ++ VK + F V+ K ++ FYA WC C L+P+ +Y
Sbjct: 3 SGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLG----KKYKGQK 58
Query: 172 QVVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATR--SEYRSQRTTEALLNFIAEELK 229
+V+A+++ D + + +PT+ +G R E L FI E
Sbjct: 59 DLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT 118
Query: 230 DPVMDLEEAPK 240
EE
Sbjct: 119 KRSRTKEELSG 129
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 85.1 bits (211), Expect = 4e-20
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 114 NNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+RV L F V+ K V +Y W R + ++ + Q
Sbjct: 12 ERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQS-QKRNHLT 70
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAE 226
V A+I+ ++ P + + ++ +PT++ EY QR + +F+ +
Sbjct: 71 FVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQ 125
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 82.8 bits (205), Expect = 2e-19
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 10/123 (8%)
Query: 119 VKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
L F +VL VV+FYA WC C P E A +V +
Sbjct: 5 SIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLA----RMI--KGKVRAGK 58
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNGLATRS---EYRSQRTTEALLNFIAEELKDPVMD 234
++C P+ I YP++K+ + A +S E + R + + I +L+
Sbjct: 59 VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQ 118
Query: 235 LEE 237
++
Sbjct: 119 VKR 121
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 88.7 bits (219), Expect = 8e-19
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 118 RVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
+ L + F ++ +L VNFY+ H L P E A VD + +
Sbjct: 117 EIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG------LLRIGA 170
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEE 237
+NC ++ + + YP+L I R+G +Y R+ E+L+ F + ++ V +L
Sbjct: 171 VNCGDDRMLCRMKGVNSYPSLFIFRSG-MAAVKYNGDRSKESLVAFAMQHVRSTVTELST 229
Query: 238 A 238
Sbjct: 230 G 230
Score = 87.5 bits (216), Expect = 2e-18
Identities = 43/259 (16%), Positives = 88/259 (33%), Gaps = 42/259 (16%)
Query: 114 NNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQV 173
+ + V L NF S + +V+F+A W L P L + + ++ Q+
Sbjct: 437 SVNSHVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKASTLLY------GQL 488
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVM 233
V ++C + + ++I YPT + + EY + E +L FI + V+
Sbjct: 489 KVGTLDCTIHEGLCNMYNIQAYPTTVVFNQS--SIHEYEGHHSAEQILEFIEDLRNPSVV 546
Query: 234 DL-----EEAPKFNVHDKTLMLGRFNS------KNSPEYE----------LFSRVCSTFN 272
L E K HD+ M+ ++ PE++ V
Sbjct: 547 SLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGLINVGSVDCG-Q 605
Query: 273 HFDVCKCFARFRHAGPPDVTLQTEDHTEA--FQGVFERSR----LVQWFTEKCVPLVREI 326
+ C + P++ + ++A + +R L W ++
Sbjct: 606 YHSFCT---QENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDL 662
Query: 327 TYENAEE-ISEEGRPLLIL 344
T + E + + ++
Sbjct: 663 TPQTFNEKVLQGKTHWVVD 681
Score = 81.0 bits (199), Expect = 3e-16
Identities = 27/117 (23%), Positives = 45/117 (38%), Gaps = 10/117 (8%)
Query: 119 VKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
L F E VL VV+FYA W P E A ++ +V +
Sbjct: 659 SIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMI------KGKVRAGK 712
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNGLATRS---EYRSQRTTEALLNFIAEELKDP 231
++C P+ I YP++K+ + A +S E + R + + I +L+
Sbjct: 713 VDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL 769
Score = 60.9 bits (147), Expect = 5e-10
Identities = 29/241 (12%), Positives = 75/241 (31%), Gaps = 29/241 (12%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
+ ++ + + + + + P L++ ++ + V + +C
Sbjct: 337 FELLSANQLEDRLAHHRWLVFFHFGKNENANDPELKKLKT-----LLKNEHIQVVRFDCS 391
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSE-YRSQRTTEALLNFIAEELKDPVMDLEEAPK 240
P I ++ P+L + + E + ++ +L F E + V L
Sbjct: 392 SAPGICSDLYV-FQPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSHVTTLGPQ-N 449
Query: 241 FNVHDKTLMLGRFNS-------KNSPEYE----------LFSRVCSTFNHFDVCKCFARF 283
F DK L F + PE + T + +C +
Sbjct: 450 FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGTLDCTIHE-GLCN---MY 505
Query: 284 RHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLI 343
P + + ++G +++++ + P V +T E+ ++ + +
Sbjct: 506 NIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEV 565
Query: 344 L 344
Sbjct: 566 W 566
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 79.7 bits (197), Expect = 3e-18
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 114 NNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+ V + N+ E VL K ++ FYA WC C L P EE A+ +D
Sbjct: 4 GSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR- 62
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAEELKDP 231
VV+A+++ I +PT+K+ G + Y RT E L+ FIAE K
Sbjct: 63 VVIAKVDATAN---DVPDEIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKYK 119
Query: 232 V 232
Sbjct: 120 A 120
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo
sapiens}
Length = 252
Score = 79.4 bits (195), Expect = 7e-17
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 22/231 (9%)
Query: 231 PVMDLEEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNH---FDVCKCFARFRHAG 287
P+ EE KF ++G F+ S + F + S F +
Sbjct: 10 PLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYD 69
Query: 288 ----------PPDVTLQTEDHTEAFQ-GVFERSRLVQWFTEKCVPLVREITYENAEEISE 336
P +T + ED T A+ ++ ++ E + +T +N + I
Sbjct: 70 DNGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQG 129
Query: 337 EGRPLLILC----HRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTAD-DLFYQRIFYHHLH 391
+ + +V L+F A F + L
Sbjct: 130 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE 189
Query: 392 LSSDDLPVLRLDDYKHI-YRLPSLITLAENPSTLVSIVEDYFSGKLHADYH 441
++ ++PV+ + K + + + + L ++DYF G L
Sbjct: 190 STAGEIPVVAIRTAKGEKFVMQEEFSR--DGKALERFLQDYFDGNLKRYLK 238
>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic
reticulum, glycoprotein, redox-active center; 1.92A
{Rattus norvegicus}
Length = 250
Score = 78.3 bits (192), Expect = 1e-16
Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 24/226 (10%)
Query: 232 VMDLEEAPKF-NVHDKTLMLGRFNSKNSPEYELFSRVCS------TFNHFDVCKCFARFR 284
++ L++ +F D ++LG F P Y + + F+H + +
Sbjct: 11 ILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEIAKFLK 70
Query: 285 HAGPPDVTLQTEDHTEAF---------QGVFERSRLVQWFTEKCVPLVREITYENAEEIS 335
+ V +Q E + QG E S + + + +PLV N +
Sbjct: 71 VSLGKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVKHALPLVGHRKTSNDAKR- 129
Query: 336 EEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ---NLSFVTADDLFYQRIF-YHHLH 391
RPL+++ + + R+ + + A+ +F AD+ Y L
Sbjct: 130 YSKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFPEYTFAIADEEDYATEVKDLGLS 189
Query: 392 LSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLH 437
S D+ LD+ + + + L V + GKL
Sbjct: 190 ESGGDVNAAILDESGKKFAMEPEEF---DSDALREFVMAFKKGKLK 232
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Length = 133
Score = 74.9 bits (184), Expect = 2e-16
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 3/122 (2%)
Query: 320 VPLVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADD 379
PL+ EI E + G PL + + ++ ++F T D
Sbjct: 5 SPLIGEIGPETYSDYMSAGIPLAYIFAETAE--ERKELSDKLKPIAEAQRGVINFGTIDA 62
Query: 380 LFYQRIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLHAD 439
+ +L+L +D P + + + P + + V+D+ +GK+
Sbjct: 63 KAFGAHA-GNLNLKTDKFPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPS 121
Query: 440 YH 441
Sbjct: 122 IK 123
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 77.3 bits (190), Expect = 3e-16
Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 16/171 (9%)
Query: 119 VKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
+ L+ + VL V F+A WC C P A V + +A
Sbjct: 14 LTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDV---KAWRPALYLAA 70
Query: 178 INCDEE--PRIRDFFHITKYPTLKIIRNGL---ATRSEYRSQRTTEALLNFIAEELKDPV 232
++C EE + F+I +PT++ + + + L + + L+
Sbjct: 71 LDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESHH 130
Query: 233 MDLEEAPKFNVHDKTLMLGRFNSKNSPEY--ELFSRVCSTFNHFDVCKCFA 281
A + F ++N+ EY +F S + + A
Sbjct: 131 DTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSY-----LAREVA 176
Score = 39.2 bits (91), Expect = 0.002
Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 16/138 (11%)
Query: 96 DWLLSRNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPV 155
+ L+ + F ++ LA++ F +
Sbjct: 120 ERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALI-FEXGGSYLAREVALD 178
Query: 156 LEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKII-RNGLATR--SEYR 212
L Q V V ++ + E + F +T +P+ ++ RNG +R
Sbjct: 179 LS-----------QHKGVAVRRV-LNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLME 226
Query: 213 SQRTTEALLNFIAEELKD 230
S+ A L ++ ++
Sbjct: 227 SRSFYTAYLQRLSGLTRE 244
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 77.7 bits (190), Expect = 1e-15
Identities = 33/229 (14%), Positives = 68/229 (29%), Gaps = 7/229 (3%)
Query: 119 VKYLRQNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQD--NQVV 174
V L ++F+ V + +V FY D C C + A + ++ +D
Sbjct: 25 VVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIAT 84
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMD 234
A +NC E + + I P L + RS ++ + F L V +
Sbjct: 85 AAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHL--EVDE 142
Query: 235 LEEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKCFARFRHAGPPDVTLQ 294
LE + V+ ++ + + V R ++
Sbjct: 143 LESEVRRLVNKHMVVDDSLKERCIDMHFKLYTSKEELVKRSVSSTDESGRFVETTELYAT 202
Query: 295 TEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEISEEGRPLLI 343
++ S + E+ L + + + G ++
Sbjct: 203 DIAGAFFSAMHYDVSLVGTEPRERLTALEDFVL-LVKDSLPSIGADGVV 250
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 71.2 bits (175), Expect = 2e-15
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 108 HPLHYTNNTTRVKYLR-QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQ 166
H H+ ++ T + L F ++ Q V++FYA WC C +++P L +
Sbjct: 3 HHHHHHSSYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQ----A 58
Query: 167 YPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
YP V + + DE P I +T PT + ++G
Sbjct: 59 YP---DVRFVKCDVDESPDIAKECEVTAMPTFVLGKDG 93
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 70.0 bits (172), Expect = 4e-15
Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 9/104 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ + +L ++ + C C ++ + Y V +I +
Sbjct: 9 EELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLE----NYN---YVEKIEILLQDMQ 61
Query: 185 RIRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALLNFIAE 226
I + + PT+ + NG + S + S E + E
Sbjct: 62 EIAGRYAVFTGPTVLLFYNGKEILRESRFISLENLERTIQLFEE 105
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 69.0 bits (169), Expect = 2e-14
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
F ++S+ L V F A WC C ++ +E+ A ++P V A+++ D
Sbjct: 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAY----EFP---TVKFAKVDADNNS 80
Query: 185 RIRDFFHITKYPTLKIIRNG 204
I + + PT I R+G
Sbjct: 81 EIVSKCRVLQLPTFIIARSG 100
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 74.6 bits (182), Expect = 2e-14
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 11/169 (6%)
Query: 119 VKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
+ L ++ VL V F+A WC P +E A V + +A
Sbjct: 14 LTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDV---KDWRPALNLAV 70
Query: 178 INCDEE--PRIRDFFHITKYPTLKIIRNGLATRS---EYRSQRTTEALLNFIAEELKDPV 232
++C EE + F+I +PT++ + S + + L + + L+
Sbjct: 71 LDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESHR 130
Query: 233 MDLEEAPKFNVHDKTLMLGRFNSKNSPEY--ELFSRVCSTFNHFDVCKC 279
A K + F ++N +Y +F R S
Sbjct: 131 DTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDL 179
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 68.5 bits (168), Expect = 2e-14
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
Q F ++SQ +L +V+F+A+WC C + P EE + Y ++V +++ DE
Sbjct: 16 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECS----KTYT---KMVFIKVDVDEV 68
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +IT PT K+ +NG
Sbjct: 69 SEVTEKENITSMPTFKVYKNG 89
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 68.1 bits (167), Expect = 2e-14
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
V +L NF L+ +++AVV+F+A+WC C +L P++EE A YP QV ++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAE----DYP---QVGFGKL 53
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
N DE P I + + PT+ ++G
Sbjct: 54 NSDENPDIAARYGVMSLPTVIFFKDG 79
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 73.2 bits (179), Expect = 3e-14
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 11/162 (6%)
Query: 75 KDHSSTMGDSDHLT--SLSSHVDDWLLSR-NPVLCTHPLHYTNNTTRVKYLRQNNFTE-V 130
++ + +S+ LT ++ +L + P L + L + VK L NF +
Sbjct: 204 EEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVA 263
Query: 131 LSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFF 190
+ K V FYA WC C L P+ ++ Y +V+A+++ +
Sbjct: 264 FDEKKNVFVEFYAPWCGHCKQLAPIWDKLG----ETYKDHENIVIAKMDSTAN--EVEAV 317
Query: 191 HITKYPTLKIIRNGLATRS-EYRSQRTTEALLNFIAEELKDP 231
+ +PTLK +Y +RT + F+ +D
Sbjct: 318 KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDG 359
Score = 52.8 bits (126), Expect = 1e-07
Identities = 32/234 (13%), Positives = 66/234 (28%), Gaps = 10/234 (4%)
Query: 214 QRTTEALLNFIAEELKDPVMDL---EEAPKFNVHDKTLMLGRFNSKNSPEYELFSRVCS- 269
+ L + L A + ++G F S + F +
Sbjct: 1 HHHSSGLEVLFQGPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEA 60
Query: 270 ----TFNHFDVCKCFARFRHAGPPDVTLQTED-HTEAFQGVFERSRLVQWFTEKCVPLVR 324
F F++++ V + D F+G + L+ + +PLV
Sbjct: 61 IDDIPFGITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVI 120
Query: 325 EITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTAD-DLFYQ 383
E T + A +I IL ++ + + + F+ D D
Sbjct: 121 EFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDN 180
Query: 384 RIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVEDYFSGKLH 437
+ L ++ P +RL + + + + GK+
Sbjct: 181 QRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIK 234
Score = 46.2 bits (109), Expect = 1e-05
Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 9/125 (7%)
Query: 113 TNNTTRVKYLRQNNFTE-VLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDN 171
N V + + + K ++ F + A +
Sbjct: 113 HNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAA----ESFKGKI 168
Query: 172 QVVVAQINCDEEPRIRDFFHIT--KYPTLKIIRNGLATR--SEYRSQRTTEALLNFIAEE 227
+ + + RI +FF + + P +++I + T E + F
Sbjct: 169 LFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRF 228
Query: 228 LKDPV 232
L+ +
Sbjct: 229 LEGKI 233
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 67.3 bits (165), Expect = 4e-14
Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ F ++Q KL VV+FYA WC C ++ P++E+ + QYP Q +++ DE
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFS----EQYP---QADFYKLDVDELG 67
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ ++ PTL + +NG
Sbjct: 68 DVAQKNEVSAMPTLLLFKNG 87
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 67.4 bits (165), Expect = 4e-14
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
++ + A+V F+ + C C ++ VL++ A + P QV ++ +
Sbjct: 4 IRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGA----RAP---QVAISSV 56
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNG 204
+ + P + + PTL IR+G
Sbjct: 57 DSEARPELMKELGFERVPTLVFIRDG 82
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 67.4 bits (165), Expect = 4e-14
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
NF EV+ KL +V+ +A+WC CHL +P+ ++ A +Y + V ++N DE +
Sbjct: 13 NFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAE----KY--KGKAVFGRLNVDENQK 66
Query: 186 IRDFFHITKYPTLKIIRNG 204
I D + + PT I NG
Sbjct: 67 IADKYSVLNIPTTLIFVNG 85
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 67.0 bits (164), Expect = 7e-14
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ +F + KL VV+F A WC C ++ P+ E A ++P V +++ DE
Sbjct: 16 KEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELA----KKFP---NVTFLKVDVDEL 68
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +++ PT +++G
Sbjct: 69 KAVAEEWNVEAMPTFIFLKDG 89
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 67.0 bits (164), Expect = 7e-14
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ F +V K+ V++F+A WC C ++ PV E+ + D V +++ DE+
Sbjct: 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISD----TPAGDK-VGFYKVDVDEQ 77
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+I I PT +NG
Sbjct: 78 SQIAQEVGIRAMPTFVFFKNG 98
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 66.2 bits (162), Expect = 1e-13
Identities = 26/79 (32%), Positives = 49/79 (62%), Gaps = 6/79 (7%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
NF E L Q+ L +V+F+A+WC C ++ P+LEE A +Y + +++VA+++ DE P+
Sbjct: 10 NFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAK----EY--EGKLLVAKLDVDENPK 63
Query: 186 IRDFFHITKYPTLKIIRNG 204
+ + PT+ + ++G
Sbjct: 64 TAMRYRVMSIPTVILFKDG 82
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 70.2 bits (172), Expect = 1e-13
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 124 QNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
++N +VL S + F+++ + C L P+LE AA QY + Q ++A+++CD
Sbjct: 14 ESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAA----QY--NGQFILAKLDCD 67
Query: 182 EEPRIRDFFHITKYPTLKIIRNG 204
E I F + PT+ + +NG
Sbjct: 68 AEQMIAAQFGLRAIPTVYLFQNG 90
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 65.9 bits (161), Expect = 2e-13
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
E + KL V++F A WC C ++ PV + A ++P V +++ DE
Sbjct: 24 TMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAK----KFP---NAVFLKVDVDEL 76
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
I + F + PT ++ G
Sbjct: 77 KPIAEQFSVEAMPTFLFMKEG 97
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 68.5 bits (167), Expect = 3e-13
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 14/113 (12%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L F +V+ + K +V F + + + A + ++VA++
Sbjct: 10 LDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLA----ENSASSDDLLVAEVGIS 63
Query: 182 -----EEPRIRDFFHITK--YPTLKIIRNG-LATRSEYRSQRTTEALLNFIAE 226
+ + + + K YP + R+G Y A+ ++
Sbjct: 64 DYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGAVKVGAIQRWLKG 116
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 64.6 bits (158), Expect = 4e-13
Identities = 32/106 (30%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
NF + + +V+F+A WC C ++ PVLEE A + ++V VA++N DE P
Sbjct: 9 NFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAE----AH--ADKVTVAKLNVDENPE 62
Query: 186 IRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALLNFIAEELK 229
F I PTL + + G + Y+ + E L +A+ L+
Sbjct: 63 TTSQFGIMSIPTLILFKGGRPVKQLIGYQPK---EQLEAQLADVLQ 105
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 65.0 bits (159), Expect = 4e-13
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 111 HYTNNTTRVKYLR-QNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQY 167
H+ ++ VK + + F E L KL VV+F A WC ++KP + +Y
Sbjct: 5 HHHHHHGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSE----KY 60
Query: 168 PQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
V+ +++ D+ + + PT + + G
Sbjct: 61 S---NVIFLEVDVDDCQDVASECEVKSMPTFQFFKKG 94
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 64.6 bits (158), Expect = 4e-13
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 114 NNTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+N ++ L N F + + K +V F C C + PVLEE Y +
Sbjct: 1 SNAMSLEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRL----NY--EES 54
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALLNFIAEELKD 230
++ +EE + F + P + ++G + + + IA+ L+D
Sbjct: 55 FGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGKMAGDVED---DEVEQMIADVLED 111
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 64.7 bits (158), Expect = 4e-13
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 125 NNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
T + KL V+ F+ W C LK V E + + N V I+ DE
Sbjct: 12 TYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISN----EPSNSN-VSFLSIDADENS 66
Query: 185 RIRDFFHITKYPTLKIIRNG 204
I + F I+ P II G
Sbjct: 67 EISELFEISAVPYFIIIHKG 86
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 65.1 bits (159), Expect = 5e-13
Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ L VV+F A WC C + P + A + P V+ +++ DE
Sbjct: 28 NEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAK----KLP---NVLFLKVDTDEL 80
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + I PT ++ G
Sbjct: 81 KSVASDWAIQAMPTFMFLKEG 101
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 67.2 bits (164), Expect = 5e-13
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 7/114 (6%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
L + F ++ +L VNFY+ C CH L P E A VD + +NC
Sbjct: 102 LERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGLLR------IGAVNCG 155
Query: 182 EEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDL 235
++ + + YP+L I R+G+A +Y R+ E+L+ F + ++ V +L
Sbjct: 156 DDRMLCRMKGVNSYPSLFIFRSGMA-AVKYNGDRSKESLVAFAMQHVRSTVTEL 208
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 63.1 bits (154), Expect = 1e-12
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 124 QNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
+ F E L KL VV+F A WC C ++KP + +Y V+ +++ D
Sbjct: 8 KTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSE----KYS---NVIFLEVDVD 60
Query: 182 EEPRIRDFFHITKYPTLKIIRNG 204
+ + + PT + + G
Sbjct: 61 DCQDVASESEVKSMPTFQFFKKG 83
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 63.0 bits (154), Expect = 1e-12
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 9/81 (11%)
Query: 126 NFTEVLSQ--YKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ +++++ +L VV+F+A WC C + P +E A + P +V A+++ D+
Sbjct: 9 DLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALA----KEIP---EVEFAKVDVDQN 61
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ +T PT I++G
Sbjct: 62 EEAAAKYSVTAMPTFVFIKDG 82
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 64.0 bits (156), Expect = 1e-12
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+E K+ + NF A WC + P E + YP ++ I+ DE
Sbjct: 36 DQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELS----ENYP---SLMFLVIDVDEL 88
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ I PT +R+G
Sbjct: 89 SDFSASWEIKATPTFFFLRDG 109
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 63.6 bits (155), Expect = 1e-12
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
T+ K+ +++F A WC C + PV E A ++P V +++ DE
Sbjct: 26 DAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAK----KFP---GAVFLKVDVDEL 78
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +++ PT I++G
Sbjct: 79 KEVAEKYNVEAMPTFLFIKDG 99
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 63.6 bits (155), Expect = 2e-12
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 108 HPLHYTNNT--TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165
+H T +V +N K A+V+FYADWC C ++ P+L+E A
Sbjct: 10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAK---- 65
Query: 166 QYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+Y D Q+V+ +++ ++E + F I P++ I
Sbjct: 66 EY--DGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPME 102
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 62.7 bits (153), Expect = 2e-12
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 9/81 (11%)
Query: 126 NFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+F LS +LAVV F C C + P + +YP Q V +++ +
Sbjct: 11 DFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMS----NKYP---QAVFLEVDVHQC 63
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+I+ PT + RN
Sbjct: 64 QGTAATNNISATPTFQFFRNK 84
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 62.8 bits (153), Expect = 2e-12
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ + L +V+F+A WC C L +L A V +++ D+
Sbjct: 13 EALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIA----EANK---DVTFIKVDVDKN 65
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
D + ++ P L ++
Sbjct: 66 GNAADAYGVSSIPALFFVKKE 86
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 63.8 bits (155), Expect = 2e-12
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K+ V+ F D C L +L +T++ + + ++ D+ +F I+
Sbjct: 24 KVLVLRFGRDEDPVCLQLDDILSKTSSDL------SKMAAIYLVDVDQTAVYTQYFDISY 77
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHDKTLMLGRFN 254
P+ NG + +Y S T+ + +D + +E + + K ++ +
Sbjct: 78 IPSTVFFFNGQHMKVDYGSPDHTK--FVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
Query: 255 SKNSPEYELFSR 266
KN P+Y+L +
Sbjct: 136 PKNIPKYDLLYQ 147
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 63.6 bits (155), Expect = 2e-12
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 106 CTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165
C PL + + F + ++ L +V+F+A WC C L+ P+LEE A
Sbjct: 28 CKTPLPWVVEAD------EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELAR---- 77
Query: 166 QYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+ ++ V ++N DE P + + + PTL + R G
Sbjct: 78 DH--AGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRG 114
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 61.9 bits (151), Expect = 3e-12
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 124 QNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
+ + L++ KL V++F+A WC C ++ P L E + TQ+ + VVV +++ D
Sbjct: 8 KADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELS----TQFA--DNVVVLKVDVD 61
Query: 182 EEPRIRDFFHITKYPTLKIIRNG 204
E I ++I+ PT ++NG
Sbjct: 62 ECEDIAMEYNISSMPTFVFLKNG 84
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 62.4 bits (152), Expect = 3e-12
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ ++K VV+F A WC C ++ P+ E + Y +V+ +++ D
Sbjct: 14 DAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSN----DYA--GKVIFLKVDVDAV 67
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + IT PT + ++G
Sbjct: 68 AAVAEAAGITAMPTFHVYKDG 88
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 62.9 bits (153), Expect = 3e-12
Identities = 10/85 (11%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 122 LRQNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ + + + + + +++ ++ E ++PQ VA +
Sbjct: 22 VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLR----EFPQF-DWQVAVAD 76
Query: 180 CDEEPRIRDFFHITKYPTLKIIRNG 204
++ I D F++ ++P + +G
Sbjct: 77 LEQSEAIGDRFNVRRFPATLVFTDG 101
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 63.2 bits (154), Expect = 3e-12
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Query: 101 RNPVLCTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETA 160
+ + ++ T ++L V++F+A WC C P+ ETA
Sbjct: 32 GHSLFDGEVINATAE----------TLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETA 81
Query: 161 AIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
A + +V ++N + EP + F I PT+ + RNG
Sbjct: 82 A----ER--AGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNG 119
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 62.0 bits (151), Expect = 4e-12
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 125 NNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+F T+VLS K +V+F+A WC C ++ PVLEE A + + VA+++ D
Sbjct: 20 ASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT----ER--ATDLTVAKLDVDTN 73
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
P F + PTL + ++G
Sbjct: 74 PETARNFQVVSIPTLILFKDG 94
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 61.6 bits (150), Expect = 6e-12
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 124 QNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+ KL +++F A WC C ++ PV E A ++P + +++ DE
Sbjct: 18 DTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYA----KKFP---GAIFLKVDVDEL 70
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ + +++ PT I++G
Sbjct: 71 KDVAEAYNVEAMPTFLFIKDG 91
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 61.6 bits (150), Expect = 6e-12
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 125 NNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182
+ +L Q+ KL VV+F+A WC C + P+ +E + + + +++ D+
Sbjct: 22 GDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELS--------EKYDAIFVKVDVDK 73
Query: 183 EPRIRDFFHITKYPTLKIIRNG 204
++I+ PT I+NG
Sbjct: 74 LEETARKYNISAMPTFIAIKNG 95
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 61.2 bits (149), Expect = 7e-12
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+F +VL K +V+F+A WC C + P LE AA +Y +++ + ++N DE P
Sbjct: 14 SFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAA----EY--GDKIEIVKLNIDENP 67
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + PTL + + G
Sbjct: 68 GTAAKYGVMSIPTLNVYQGG 87
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 62.1 bits (151), Expect = 8e-12
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 115 NTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQV 173
N + + + +V K VV FY+ C +C ++P EE A +Y +
Sbjct: 4 NGSSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAK----EY--GSSA 57
Query: 174 VVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
V +IN P + + + PT K +G
Sbjct: 58 VFGRINIATNPWTAEKYGVQGTPTFKFFCHG 88
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 62.1 bits (151), Expect = 9e-12
Identities = 27/125 (21%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 106 CTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165
C L T +V + +V+F+A WC C + P + AA
Sbjct: 40 CGAGL----ITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAA---- 91
Query: 166 QYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALLNF 223
QV +A+I+ P + I P + G LA + R L+ F
Sbjct: 92 TL--AGQVRLAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPA---SELVGF 146
Query: 224 IAEEL 228
+ +L
Sbjct: 147 VRGKL 151
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 61.3 bits (149), Expect = 1e-11
Identities = 14/81 (17%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 125 NNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
+N V + + V+ F+A WC+ C + +++ Y ++ + +++ D+
Sbjct: 32 SNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQK----YY--GKRIYLLKVDLDKN 85
Query: 184 PRIRDFFHITKYPTLKIIRNG 204
+ F + PT+ +++N
Sbjct: 86 ESLARKFSVKSLPTIILLKNK 106
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 60.4 bits (147), Expect = 1e-11
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
NF EVL K +V+F+A WC C ++ P++EE A +Y + +V V ++N DE P
Sbjct: 10 NFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAK----EY--EGKVKVVKVNVDENP 63
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ I PTL + +NG
Sbjct: 64 NTAAQYGIRSIPTLLLFKNG 83
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 60.0 bits (146), Expect = 1e-11
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 119 VKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQ 177
V+ + +++ VL +V+F+A WC C L+ PV++E A +Y ++ V +
Sbjct: 2 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELA----KEY--SGKIAVYK 55
Query: 178 INCDEEPRIRDFFHITKYPTLKIIRNG 204
+N DE P I ++I PT+ +NG
Sbjct: 56 LNTDEAPGIATQYNIRSIPTVLFFKNG 82
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 61.0 bits (148), Expect = 1e-11
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 108 HPLHYTNNT--TRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165
+H T ++ ++ K A+V+FYADWC C ++ P+LEE +
Sbjct: 23 GTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSK---- 78
Query: 166 QYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+Y ++ + ++N D+EP + F I PT+ +
Sbjct: 79 EY--AGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMK 115
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 61.4 bits (149), Expect = 2e-11
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 9/82 (10%)
Query: 125 NNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182
F E+L L VV+F+A W C + V+ E A + P QV ++ +
Sbjct: 21 GQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELA----KELP---QVSFVKLEAEG 73
Query: 183 EPRIRDFFHITKYPTLKIIRNG 204
P + + + I+ PT +N
Sbjct: 74 VPEVSEKYEISSVPTFLFFKNS 95
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 60.4 bits (147), Expect = 2e-11
Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 108 HPLHYTNNTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQ 166
H H+ + T ++ +F V++ VV+F+A WC C +L P LE+ A +
Sbjct: 6 HHHHHGSTTFNIQ--DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA----K 59
Query: 167 YPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+VV+A+++ D+ + + ++ PT+ ++NG
Sbjct: 60 Q--HGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNG 95
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 60.0 bits (146), Expect = 2e-11
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
F +EVL + +V F+A WC C L+ P++ A Y +++ V ++ D P
Sbjct: 16 EFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAAN----TY--SDRLKVVKLEIDPNP 69
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + P L++++
Sbjct: 70 TTVKKYKVEGVPALRLVKGE 89
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 60.6 bits (147), Expect = 2e-11
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 3/80 (3%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQ-DNQVVVAQINCDEEP 184
F ++L A++ Y+ C CH P L + + VD ++ +
Sbjct: 25 EFRQLLQ--GDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAAR 82
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + PTL + G
Sbjct: 83 LEMNKAGVEGTPTLVFYKEG 102
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 59.6 bits (145), Expect = 2e-11
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
F VL +V+F+A WC C ++ PV++E A +Y +++ ++N DE P
Sbjct: 10 TFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAG----EY--KDKLKCVKLNTDESP 63
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + I PT+ + + G
Sbjct: 64 NVASEYGIRSIPTIMVFKGG 83
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 60.1 bits (146), Expect = 3e-11
Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 102 NPVLCTHPLHYTNNTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETA 160
+ + + +++ ++ +L ++F T+VL +V+F+A+WC ++ P+L+E A
Sbjct: 7 HHHHSSGLVPRGSHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA 66
Query: 161 AIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+Y ++ VA++N D+ P + I PTL + +NG
Sbjct: 67 D----EY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 104
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 59.2 bits (144), Expect = 3e-11
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 118 RVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +Y ++ VA
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD----EY--QGKLTVA 56
Query: 177 QINCDEEPRIRDFFHITKYPTLKIIRNG 204
++N D+ P + I PTL + +NG
Sbjct: 57 KLNIDQNPGTAPKYGIRGIPTLLLFKNG 84
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 59.2 bits (144), Expect = 3e-11
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+F +VL L +V+F+A+WC C ++ P L E ++ +V VA++N D+ P
Sbjct: 11 SFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGK----EF--AGKVTVAKVNIDDNP 64
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + + PTL ++R+G
Sbjct: 65 ETPNAYQVRSIPTLMLVRDG 84
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 60.2 bits (146), Expect = 3e-11
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)
Query: 125 NNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE 182
+ +V S V+ F A WC+ C+ +K + V + I+ D
Sbjct: 29 GSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQL--------NYYYVTLVDIDVDI 80
Query: 183 EPRIRDFFHITKYPTLKIIRNG 204
P++ D +I PT + N
Sbjct: 81 HPKLNDQHNIKALPTFEFYFNL 102
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 58.5 bits (142), Expect = 5e-11
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 118 RVKYLRQNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVV 175
+V + ++ F ++ + K V++ + WC + P E+ A +Y V+
Sbjct: 6 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAE----EYL---DVIF 58
Query: 176 AQINCDEE-PRIRDFFHITKYPTLKIIRNG 204
+++C++E + I PT KI++
Sbjct: 59 LKLDCNQENKTLAKELGIRVVPTFKILKEN 88
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 58.6 bits (142), Expect = 8e-11
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 119 VKYLRQNNFTEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
V + ++ F ++ + K V++ + WC C + P E+ A +Y V+
Sbjct: 20 VTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAE----EYL---DVIFL 72
Query: 177 QINCDEE-PRIRDFFHITKYPTLKIIRNG 204
+++C++E + I PT KI++
Sbjct: 73 KLDCNQENKTLAKELGIRVVPTFKILKEN 101
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 60.8 bits (147), Expect = 9e-11
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 3/122 (2%)
Query: 120 KYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
L++ + + + A C C + +L+ET ++ QD ++ + +
Sbjct: 9 MQLKEL-AQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYS 66
Query: 180 CDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAP 239
+ + + + PT+ I Y I + +
Sbjct: 67 PFTHKEETEKYGVDRVPTIV-IEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSE 125
Query: 240 KF 241
K
Sbjct: 126 KT 127
Score = 48.9 bits (116), Expect = 9e-07
Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
+ + F C +C + + A ++ + I+ E + + F +
Sbjct: 137 PIEIWVFVTTSCGYCPSAAVMAWDFALA-------NDYITSKVIDASENQDLAEQFQVVG 189
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEA 238
P + I N +E+ + A L +I + + E+A
Sbjct: 190 VPKIVI--NK--GVAEFVGAQPENAFLGYIMAVYEKLKREKEQA 229
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 56.9 bits (138), Expect = 1e-10
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K+ + F + C C K V+EE A + P + V V IN E P+ + I
Sbjct: 3 KVKIELFTSPMCPHCPAAKRVVEEVAN----EMP--DAVEVEYINVMENPQKAMEYGIMA 56
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEEL 228
PT+ I + E+ T EAL+ I + L
Sbjct: 57 VPTIVINGDV-----EFIGAPTKEALVEAIKKRL 85
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 2e-10
Identities = 72/532 (13%), Positives = 142/532 (26%), Gaps = 140/532 (26%)
Query: 29 VLANRESKILLRAAQGLEDWFELLEECTMTSKERRKALRLYGNAFYKD--------HSST 80
+L+ E ++ + + L T+ SK+ + + +
Sbjct: 45 ILSKEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 81 MGDSDHLTSLSSHVDDWLLSRNPVLCTHPL----HYTNNTTRVKYLRQNNF--------- 127
S D L + N V + + Y + LR
Sbjct: 103 RQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS 161
Query: 128 ------TEVLSQYKL-AVVNFYADWCRF--CH----LLKPVLEETAAIVDTQYPQ--DNQ 172
+V YK+ ++F W C+ +L+ L++ +D + D+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHS 220
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPV 232
+ + +R Y LL + L + V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE---------------------NCLL--V---LLN-V 253
Query: 233 MDLEEAPKFNVHDKTLMLGRFNS-----KNSPEYELFS-RVCSTFNHFDVCKCFARFRHA 286
+ + FN+ K L+ RF + + T +V ++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 287 GPPDVTLQTEDHTEAFQGVF------ERSRLVQWFTEKCVPL--VREITYENAEEISEEG 338
P D+ + + + W C L + E + E E
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEY 371
Query: 339 RPLLILCHRHGDLTSVAIFK---RIVRDTIGQYAQNLSFVTADDL--------------F 381
R + ++F I + ++ +
Sbjct: 372 RKMFDRL---------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 382 YQRIFYHHLHLS----SDDLPVL--RLDDYKHIYRLPSLITLAENPSTLVSIVED-YFSG 434
I ++L ++ L + D+ Y +P + L+ D YF
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDH---YNIPK----TFDSDDLIPPYLDQYFY- 474
Query: 435 KLHADYHDGNSEHCDRRRKAELQANVEDVFPIYELETESMFRNLTPSKLRYT 486
H +H N EH +R +F + L+ FR L K+R+
Sbjct: 475 -SHIGHHLKNIEHPER----------MTLFRMVFLD----FRFLE-QKIRHD 510
Score = 40.2 bits (93), Expect = 0.002
Identities = 27/164 (16%), Positives = 45/164 (27%), Gaps = 41/164 (25%)
Query: 346 HRHGDLTSVAIFKRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSSDDL-PVLRLDD 404
H H D + +D + + FV D+ + + D +L ++
Sbjct: 4 HHHMD-FETGEHQYQYKDILSVFEDA--FV--DNFDCKDV--------QDMPKSILSKEE 50
Query: 405 YKHIYRLPS--------LITLAENPSTLVSIVEDYFSGKLHADY-------HDGNSEHCD 449
HI TL +V+ + L +Y +
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 450 RRRKAELQA----NVEDVFPIYELETESMFRNLTPSKLRYTLLK 489
R Q N VF Y + + KLR LL+
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL-----KLRQALLE 146
Score = 36.4 bits (83), Expect = 0.022
Identities = 65/420 (15%), Positives = 133/420 (31%), Gaps = 95/420 (22%)
Query: 67 RLYGNAFY---KDHSSTMGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNNTTRVKYLR 123
++ F+ K+ +S + L L +D SR+ L + ++ L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 124 QNNFTEVLSQYK--LAV---VNFYADWCRF---CHLL-----KPVLEETAAIVDTQYPQD 170
++ Y+ L V V W F C +L K V + +A T D
Sbjct: 239 KSK------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 171 NQVV-------------VAQINCDEEPRIRDFFHITKYP-TLKII----RNGLATRSEYR 212
+ + + PR + P L II R+GLAT ++
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN----PRRLSIIAESIRDGLATWDNWK 348
Query: 213 SQRTTEALLNFIA--------EELKDPVMDLEEAPKFNVHDKTLMLGRFNSKNSPEYELF 264
+ L I E + L P + H T++L + + ++
Sbjct: 349 -HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWF-DVIKSDVM 405
Query: 265 SRVCSTFNHFDVCKCFARFR---HAGPPDVTLQTEDHTEAFQGVFERSRLVQ-WFTEKCV 320
V + V K + ++ ++ E+ + + + + + + ++ +
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 321 PLVRE------ITY-----ENAEEISEEGRPLL--------ILCHRHGDLTSVAIFKRIV 361
P + I + E+ E ++ L I RH A +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNA--SGSI 520
Query: 362 RDTIGQYAQNLSFVTADDLFYQRIFYHHLH---------LSSDDLPVLRL---DDYKHIY 409
+T+ Q ++ +D Y+R+ L + S +LR+ + + I+
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 59.1 bits (143), Expect = 3e-10
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 108 HPLHYTNNTTRVKYLRQNNF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQ 166
H H+ + ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A +
Sbjct: 3 HHHHHHPMSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD----E 58
Query: 167 YPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
Y ++ VA++N D+ P + I PTL + +NG
Sbjct: 59 Y--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 94
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 56.1 bits (136), Expect = 4e-10
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
+F+ S+ + + +F+A WC ++ PVLEE + +++ + +I+ DE
Sbjct: 10 SFSAETSE-GVVLADFWAPWCGPSKMIAPVLEELDQ----EM--GDKLKIVKIDVDENQE 62
Query: 186 IRDFFHITKYPTLKIIRNG--LATRSEYRSQRTTEALLNFIAEELKDP 231
+ + PTL ++++G + T ++ + EAL + + L +
Sbjct: 63 TAGKYGVMSIPTLLVLKDGEVVETSVGFKPK---EALQELVNKHLLEH 107
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 56.8 bits (137), Expect = 4e-10
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 13/94 (13%)
Query: 119 VKYLRQNNF-TEVLSQYKLAV-VNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA 176
+KY E+ ++ V F+A+W C P+ + + +Y +
Sbjct: 9 IKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSL----KY-NCTGLNFG 63
Query: 177 QINCDEEPRIRDFFHITKY------PTLKIIRNG 204
+++ + + ++ PTL + + G
Sbjct: 64 KVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGG 97
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 55.4 bits (134), Expect = 6e-10
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 126 NF-TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+F ++V S + +V+F+A C C ++ PVLEE AA Y + + + +++ DE P
Sbjct: 12 DFDSKVES--GVQLVDFWATACGPCKMIAPVLEELAA----DY--EGKADILKLDVDENP 63
Query: 185 RIRDFFHITKYPTLKIIRNG 204
+ + PTL + ++G
Sbjct: 64 STAAKYEVMSIPTLIVFKDG 83
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 58.1 bits (140), Expect = 1e-09
Identities = 15/131 (11%), Positives = 42/131 (32%), Gaps = 14/131 (10%)
Query: 106 CTHPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDT 165
H H + T L + +F + + ++ +VV F +
Sbjct: 5 HHHHHHGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKSA-- 60
Query: 166 QYPQDNQVVVAQINCDEEP-----RIRDFFHITK--YPTLKIIRNGLATRSEYRSQ--RT 216
+ +++A + + + D + + +P++ + + + S T
Sbjct: 61 -HKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVT 119
Query: 217 TEALLNFIAEE 227
+ L F++
Sbjct: 120 LDNLKAFVSAN 130
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 1e-09
Identities = 65/460 (14%), Positives = 122/460 (26%), Gaps = 221/460 (48%)
Query: 21 KTYSVIALVLANR------ESKILLRAA-------------QG-LEDWFELLEECTMTSK 60
K Y + A ++A R S L RA QG +D+FE
Sbjct: 124 KNY-ITARIMAKRPFDKKSNSA-LFRAVGEGNAQLVAIFGGQGNTDDYFE---------- 171
Query: 61 ERRKALRLYGNAFYKDHSSTMGD-----SDHLTSLSSHVDD-------------WL---- 98
E LR Y+ + +GD ++ L+ L D WL
Sbjct: 172 E----LR----DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 99 -------LSRNPVLCTHPL-------HYTNNTTRVKYLRQNNFTEVL---SQYKLAVV-- 139
L P+ C PL HY T ++ L + + +V
Sbjct: 224 NTPDKDYLLSIPISC--PLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 140 ----------NFYAD---------W--CRFCH---------------------------- 150
+F+ + R C+
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 151 ----LLKPVLEETAAIVDTQYPQDNQVVVAQIN--------------------------- 179
L + +++ ++ P QV ++ +N
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 180 ----------CDEEPRIRD-F------FHITKY--PTLKIIRNGLATRSEYRSQRTTEAL 220
+ + + + F FH + P +I L +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFH-SHLLVPASDLINKDLVKNN----------- 447
Query: 221 LNFIAEELKDPVMDLEEAPKFNVHD-KTLMLGRFNSKNSPEYELFSRVCSTFNHFDVCKC 279
++F A++++ PV ++ D L R S + E + + ++
Sbjct: 448 VSFNAKDIQIPV--------YDTFDGSDL---RVLSGSISE-RIVDCIIRLPVKWETT-T 494
Query: 280 FARFRHA---GP---PDVTLQTEDHTEAFQGVFERSRLVQ 313
+ H GP + + T + + GV R++
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKDG-TGV----RVIV 529
Score = 52.4 bits (125), Expect = 3e-07
Identities = 48/268 (17%), Positives = 86/268 (32%), Gaps = 79/268 (29%)
Query: 203 NGLATRS---EYRSQRTT---EALLNFIAEELKDPVMDLEEAP--KFNVHDKTL----ML 250
+ +TR + S FIA +L++ + P F D+ ++
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELV 61
Query: 251 GRF----NSKNSP-EYELFSRVCST-FNHFDVCKCFARFRHAGPPDVTLQTED-HTEAFQ 303
G+F +S P + F +V + F+ + L+ D H A
Sbjct: 62 GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE-----NCY---------LEGNDIHALA-- 105
Query: 304 GVFERSRLVQWFTEKCVPLVREI--TYENA-----EEISEEGRPLLILCHRHGDLTSVAI 356
++L+Q + + +E+ Y A ++ L G+ VAI
Sbjct: 106 -----AKLLQ-ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 357 F--------------------KRIVRDTIGQYAQNLSFVTADDLFYQRIFYHHLHLSS-- 394
F +V D I A+ LS + L +++F L++
Sbjct: 160 FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 395 ---DDLPVLRLDDY-KHI-YRLPSLITL 417
+ P DY I P LI +
Sbjct: 220 ENPSNTPD---KDYLLSIPISCP-LIGV 243
Score = 36.6 bits (84), Expect = 0.024
Identities = 37/235 (15%), Positives = 59/235 (25%), Gaps = 72/235 (30%)
Query: 167 YPQDNQVVVAQI--NCDEEPRIRDFFHITK----YPTLKIIRNGLATRSEYRSQRTTEAL 220
Y + D + F I P I G + +R E
Sbjct: 1636 Y--KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG-----GEKGKRIRENY 1688
Query: 221 LNFIAEELKDPVMDLEEAPK-FNVHDKTLMLGRFNSKNSPEYELFSRVCSTFNH----FD 275
I E + D + E+ K N H + F S + L + T
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRS---EKGLLSA----TQFTQPALTL 1738
Query: 276 VCK-CFARFRHAG--PPDVT------------------LQTEDHTEAFQGVFERSRLVQW 314
+ K F + G P D T + E + VF R +Q
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES---LVEVVFYRGMTMQV 1795
Query: 315 FTEK------------CVP--LVREITYENAEEISEEGRPLLILCHRHGDLTSVA 355
+ P + + E + + E + R G L +
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVER------VGKRTGWLVEIV 1844
Score = 33.5 bits (76), Expect = 0.20
Identities = 38/187 (20%), Positives = 61/187 (32%), Gaps = 65/187 (34%)
Query: 233 MDLEEAPK-----FNVHDKTLM--LGRFN----SKNSPEYELFSRVCSTFNHFDVCKC-- 279
MDL + K +N D G F+ N+P L T HF K
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYG-FSILDIVINNPV-NL------TI-HFGGEKGKR 1683
Query: 280 ----FARFRHAGPPDVTLQTEDHTEAFQGVFERSRLVQWFTEKCVPLVREITYENAEEIS 335
++ D L+TE + F+ + E S + +EK + L T + +
Sbjct: 1684 IRENYSAMIFETIVDGKLKTE---KIFKEINEHSTSYTFRSEKGL-LSA--T-QFTQ--- 1733
Query: 336 EEGRPLLILCHRHGDLTSVAIFKR------IVRDT------IGQY------AQNLSFVTA 377
P L L A F+ I D +G+Y A +S +
Sbjct: 1734 ----PALTL-------MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESL 1782
Query: 378 DDLFYQR 384
++ + R
Sbjct: 1783 VEVVFYR 1789
Score = 28.5 bits (63), Expect = 6.0
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 19/95 (20%)
Query: 401 RLDDY-KHIYRLPSLITL-AENPSTLVSIVEDYFSGKLHADYHDGNSEHCDRRRKAELQA 458
R D++ K Y S++ + NP L +F G+ G +R + A
Sbjct: 1648 RADNHFKDTYGF-SILDIVINNPVNLTI----HFGGE------KG------KRIRENYSA 1690
Query: 459 NVEDVFPIYELETESMFRNLTPSKLRYTLLKKEEL 493
+ + +L+TE +F+ + YT ++ L
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGL 1725
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 54.8 bits (132), Expect = 2e-09
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 21/104 (20%)
Query: 116 TTRVKYLRQNNF-TEVLSQYKLAVVNFYADWC--------------RFCHLLKPVLEETA 160
+ ++ +L ++F T+VL +V+F+A+WC C ++ P+L+E A
Sbjct: 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
Query: 161 AIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+Y ++ VA++N D+ P + I PTL + +NG
Sbjct: 62 D----EY--QGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 55.9 bits (134), Expect = 5e-09
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
+ ++ F C +C L + + A +++ + E P D +++
Sbjct: 135 DVRILVFVTPTCPYCPLAVRMAHKFAIENTKAG--KGKILGDMVEAIEYPEWADQYNVMA 192
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEEL 228
P + I NG R E+ + L + L
Sbjct: 193 VPKIVIQVNG-EDRVEFEGAYPEKMFLEKLLSAL 225
Score = 36.6 bits (84), Expect = 0.009
Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 119 VKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI 178
K +++ F+++++ KL +V D C++C LK +++E + + D +
Sbjct: 9 KKVIKEEFFSKMVNPVKL-IVFVRKDHCQYCDQLKQLVQELSELTD-----KLSYEIVDF 62
Query: 179 NCDEEPRIRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224
+ E + + I + P I ++G Y F+
Sbjct: 63 DTPEGKELAKRYRIDRAPATTITQDGKDFGVRYFGLPAGHEFAAFL 108
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 52.3 bits (126), Expect = 5e-09
Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPT 197
+ F + C +C + V++E +++ V +I+ + + + P
Sbjct: 5 IEVFTSPTCPYCPMAIEVVDEAKKEF------GDKIDVEKIDIMVDREKAIEYGLMAVPA 58
Query: 198 LKIIRNGLATRSEYRSQRTTEALLNFIAEELK 229
+ I NG + + E L I +E++
Sbjct: 59 IAI--NG---VVRFVGAPSREELFEAINDEME 85
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 52.5 bits (126), Expect = 1e-08
Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 113 TNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQ 172
+ + E + ++ F D C +C ++ L + +
Sbjct: 5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSK----EREGKFN 60
Query: 173 VVVAQINCDEEPRIRDFFHITKYPTLKII-RNG 204
+ A++ ++ + + PT + + G
Sbjct: 61 IYYARLEEEKNIDLAYKYDANIVPTTVFLDKEG 93
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 52.1 bits (125), Expect = 2e-08
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 126 NFTEVLSQY----KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD 181
+F E L + KL V+ + WC C L V+ + + + D Y + V +++ +
Sbjct: 15 SFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVAD--YFNRH-FVNLKMDME 71
Query: 182 --EEPRIRDFFHITKYPTLKIIR-NG 204
E +R + + YPTL I +G
Sbjct: 72 KGEGVELRKKYGVHAYPTLLFINSSG 97
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 51.0 bits (122), Expect = 4e-08
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 118 RVKYLRQNNF-TEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
++ + N + EV + V++ Y C ++ L A ++P +
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLAR----KFP---ETK 63
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+ + + +H PT+ + +NG
Sbjct: 64 FVKAIVNSCI---EHYHDNCLPTIFVYKNG 90
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 50.0 bits (119), Expect = 7e-08
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 15/121 (12%)
Query: 111 HYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQD 170
+ +N ++ E L + + A C +C L +
Sbjct: 6 QFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVV--------AE 57
Query: 171 NQVVVAQINCDEEPRIRDF------FHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFI 224
+ + IN +E ++ D + I P I +G S + + + +F
Sbjct: 58 TKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDG-QINVRCDSSMSAQEIKDFA 116
Query: 225 A 225
Sbjct: 117 G 117
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 49.0 bits (117), Expect = 1e-07
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 13/90 (14%)
Query: 118 RVKYLRQNNF-TEVL--SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
++ + N + EV + +++ Y C L+ L A ++P +
Sbjct: 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLAR----KFP---ETK 56
Query: 175 VAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+ + +H PT+ + +NG
Sbjct: 57 FVKAIVNS---CIQHYHDNCLPTIFVYKNG 83
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 50.1 bits (119), Expect = 2e-07
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 5/76 (6%)
Query: 127 FTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRI 186
E + +V + WC C LKP E+ I + + V+ + +EEP+
Sbjct: 39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE----LSHNFVMVNLEDEEEPKD 94
Query: 187 RDFFHITKY-PTLKII 201
DF Y P + +
Sbjct: 95 EDFSPDGGYIPRILFL 110
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 45.8 bits (108), Expect = 3e-06
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 106 CTHPL-HYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYA-DWCRF--CHLLKPVLEETAA 161
+ L + + + ++ VV F+ D RF L VL E
Sbjct: 3 MSGSLARAAARPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAVVLPELIN 62
Query: 162 IVDTQYPQDNQVVVAQINCDEEPRIRDFFHITKYPTLKIIRNG 204
+P ++V A++ + E + F + P+L +++
Sbjct: 63 ----AFPG--RLVAAEVAAEAERGLMARFGVAVCPSLAVVQPE 99
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 44.8 bits (106), Expect = 7e-06
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQI----NCDEEPRIRDFF 190
K +++ YADWC C + + V+ Q N ++ +
Sbjct: 32 KPVMLDLYADWCVACKEFEKYTFSDPQVQK----ALADTVLLQANVTANDAQDVALLKHL 87
Query: 191 HITKYPTLKII-RNGLATRSEYRSQRTT 217
++ PT+ G E+ R T
Sbjct: 88 NVLGLPTILFFDGQG----QEHPQARVT 111
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 43.4 bits (102), Expect = 2e-05
Identities = 17/132 (12%), Positives = 36/132 (27%), Gaps = 18/132 (13%)
Query: 108 HPLHYTNNTTRVKYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQY 167
L Y + + + +K ++ F A+WC C L L
Sbjct: 4 LNLPYDEHADAWTQV-KKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQK----NTA 58
Query: 168 PQDNQVVVAQINC---DEEPRIRDFFHITK---YPTL-------KIIRNGLATRSEYRSQ 214
V +I+ D + + P + K+ +
Sbjct: 59 LIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANARK 118
Query: 215 RTTEALLNFIAE 226
+ + + +F A+
Sbjct: 119 MSDQGIYDFFAK 130
>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone,
endoplasmic reticulum, isomeras membrane, redox-active
center; 2.20A {Homo sapiens}
Length = 147
Score = 42.3 bits (99), Expect = 6e-05
Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 1/127 (0%)
Query: 311 LVQWFTEKCVPLVREITYENAEEISEEGRPLLILCHRHGDLTSVAIFKRIVRDTIGQYAQ 370
+PLV E T + A +I IL ++ + +
Sbjct: 4 HHHHMKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG 63
Query: 371 NLSFVTAD-DLFYQRIFYHHLHLSSDDLPVLRLDDYKHIYRLPSLITLAENPSTLVSIVE 429
+ F D D + L ++ P +RL + + +
Sbjct: 64 KILFAFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 123
Query: 430 DYFSGKL 436
+ GK+
Sbjct: 124 RFLEGKI 130
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 43.1 bits (101), Expect = 9e-05
Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 8/77 (10%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
E + VV+ Y D + C L L AA +YP V +I
Sbjct: 127 IEKEQKITTIVVHIYEDGIKGCDALNSSLICLAA----EYP---MVKFCKIKASNTGAGD 179
Query: 188 DFFHITKYPTLKIIRNG 204
F PTL + + G
Sbjct: 180 R-FSSDVLPTLLVYKGG 195
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 41.5 bits (98), Expect = 9e-05
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
K AV+ F+A WC C PV+ + AA +P+ V VA + D+ P +++
Sbjct: 20 GESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGL--DQVPAMQE 73
Query: 189 FFHITKYPTLKII 201
F + T +
Sbjct: 74 FVNKYPVKTFTQL 86
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 41.0 bits (96), Expect = 2e-04
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 13/113 (11%)
Query: 124 QNNFTEVL----SQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ +F Q K ++N C L + A+ + + Q+
Sbjct: 28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNI---IREHFIFWQVY 84
Query: 180 CD--EEPRIRDFFHITKYPTLKII--RNG--LATRSEYRSQRTTEALLNFIAE 226
D E R F+ + +P + I+ R G L + + + F+ E
Sbjct: 85 HDSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVEWHQLDVSSFLDQVTGFLGE 137
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 33/122 (27%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
+ K AV+ F+ WC FC+ P L + + V I + ++
Sbjct: 19 GASLQGKPAVLWFWTPWCPFCNAEAPSLSQ-------VAAANPAVTFVGIATRADVGAMQ 71
Query: 188 DF---------------------FHITKYPTLKII-RNG-LATRSEYRSQRTTEALLNFI 224
F +++ P +G + + + + L +
Sbjct: 72 SFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRV 131
Query: 225 AE 226
A
Sbjct: 132 AA 133
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K +V + + C++ LK V + I + + +N E ++ +
Sbjct: 45 KPLMVIHHLEDCQYSQALKKVFAQNEEIQEM----AQNKFIM-LNLMHETTDKNLSPDGQ 99
Query: 195 YPTLKIIRNG 204
Y + +
Sbjct: 100 YVPRIMFVDP 109
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 39.3 bits (92), Expect = 4e-04
Identities = 11/69 (15%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCD--EEPRIRDFFHI 192
++ +V F+++ C +C + + + + VVA ++ D E + + +
Sbjct: 20 RMVMVYFHSEHCPYCQQMN---TFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRYRV 76
Query: 193 TKYPTLKII 201
PT +
Sbjct: 77 PGTPTFVFL 85
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote
structural genomics, structural genomics consortium,
SGC, U function; 1.73A {Plasmodium yoelii}
Length = 160
Score = 40.1 bits (93), Expect = 4e-04
Identities = 14/127 (11%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
+L + F D+ C + +L + A + N V+ ++ E P + +
Sbjct: 42 RLVCIRFGHDYDPDCMKMDELLYKVADDI------KNFCVIYLVDITEVPDFNTMYELYD 95
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKDPVMDLEEAPKFNVHDKTLMLGRFN 254
++ + + + +N+ ++ + +E + + L++ +
Sbjct: 96 PVSVMFFYRNKHMMIDLGTGNNNK--INWPMNNKQEFIDIVETIFRGARKGRGLVISPKD 153
Query: 255 SKNSPEY 261
+Y
Sbjct: 154 YSTKYKY 160
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 39.3 bits (92), Expect = 6e-04
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 7/68 (10%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
L + +VN +A WC C P + + + + +V I D I +
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYK----AQKKGSVDMVG-IALDTSDNIGN 73
Query: 189 FFHITKYP 196
F T
Sbjct: 74 FLKQTPVS 81
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 39.2 bits (92), Expect = 6e-04
Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 37/127 (29%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP---- 184
+S+ + ++ FY C C + + E A V+ V+A I DE
Sbjct: 22 MSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVE-MVENGTLRVLA-IYPDENREEWA 79
Query: 185 --------------------RIRDFFHITKYPTLKII-RNG--LATRSEYRSQRTTEALL 221
R R + I PT+ ++ + + + E L+
Sbjct: 80 TKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKDT------SMEQLI 133
Query: 222 NFIAEEL 228
+++A +
Sbjct: 134 DYLATQA 140
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 39.6 bits (92), Expect = 0.001
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 8/77 (10%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
E + VVN Y D R C L LE AA +YP V +I
Sbjct: 114 IEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAA----EYP---MVKFCKIRASNTGAGD 166
Query: 188 DFFHITKYPTLKIIRNG 204
F PTL + + G
Sbjct: 167 R-FSSDVLPTLLVYKGG 182
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 11/77 (14%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVA-----QINCDEE 183
+ K ++ F+A WC C E+ A + ++ ++ ++
Sbjct: 33 VYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQ----DAKFSSANLITVASPGFLHEKKD 88
Query: 184 PRIRDFFHITKYPTLKI 200
+ ++ YP L +
Sbjct: 89 GEFQKWYAGLNYPKLPV 105
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR--I 186
LS ++ +VNF+A WC C P + A ++ ++ DE + +
Sbjct: 23 LSDLKGQVVIVNFWATWCPPCREEIPSMMRLNA----AMAGKPFRMLC-VSIDEGGKVAV 77
Query: 187 RDFFHITKYP 196
+FF T +
Sbjct: 78 EEFFRKTGFT 87
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 37.7 bits (88), Expect = 0.003
Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
+ K +VNF+A WC C P + + + V I +E+ ++
Sbjct: 29 SASLKGKAYIVNFFATWCPPCRSEIPDMVQVQK----TWASRGFTFVG-IAVNEQLPNVK 83
Query: 188 DF---FHITKYPTL 198
++ I YP +
Sbjct: 84 NYMKTQGII-YPVM 96
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 37.0 bits (86), Expect = 0.003
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
L Q+ + ++ C C + L+ + I V++ I DEE
Sbjct: 26 LYQFPAEYTLLFINNPGCHACAEMIEGLKASPVING-FTAAKKLKVLS-IYPDEEL 79
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 36.5 bits (85), Expect = 0.005
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 11/72 (15%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR--I 186
L+QY K+ +VNF+A WC +C P ++ +P+ + VV+A +N ++
Sbjct: 36 LAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVK----SFPKGDLVVLA-VNVEKRFPEKY 90
Query: 187 RDFFHITKYPTL 198
R + L
Sbjct: 91 RRAP--VSFNFL 100
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 36.5 bits (85), Expect = 0.006
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLK--PVLEETAAIVDTQYPQDNQVVVAQINCDEEPR- 185
LS Y K + F+A WC C L P +E A + D V+ ++ +
Sbjct: 17 LSDYKGKKVYLKFWASWCSIC--LASLPDTDEIAK----EAGDDYVVLTV-VSPGHKGEQ 69
Query: 186 ----IRDFFHITKYPTLKI 200
++++ Y L +
Sbjct: 70 SEADFKNWYKGLDYKNLPV 88
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 36.5 bits (85), Expect = 0.006
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
LS K+ ++ F A WC C P +E+ ++ + + I+ DE ++
Sbjct: 28 LSSLRGKVVMLQFTASWCGVCRKEMPFIEKDI---WLKHKDNADFALIGIDRDEPLEKVL 84
Query: 188 DFFHITKYP 196
F T
Sbjct: 85 AFAKSTGVT 93
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 36.7 bits (85), Expect = 0.007
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLK--PVLEETAAIVDTQYPQDNQVVVAQINCDEEPR- 185
LS + K +VN +A WC C K P L+E + N VVA IN D
Sbjct: 55 LSDFRGKTLLVNLWATWCVPC--RKEMPALDELQG----KLSGPNFEVVA-INIDTRDPE 107
Query: 186 -IRDFFHITKYPTLKI 200
+ F L
Sbjct: 108 KPKTFLKEANLTRLGY 123
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.008
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 11 EVESV-EW--VNRKTYSVIALVLANRESKILLRAAQGLEDWFELLEECTMTSKERRKAL- 66
E ES+ +W RK + E + +A + LE+W + E E+ K
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE----QVEKNKINN 138
Query: 67 RLYGNAFYKDHSS 79
R+ AFY+ +
Sbjct: 139 RIADKAFYQQPDA 151
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 36.3 bits (84), Expect = 0.009
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 9/76 (11%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAA-IVDTQYPQDNQVVVAQINCDEEPR-- 185
LS + ++ ++N + WC C L+ + V IN + R
Sbjct: 54 LSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDI 113
Query: 186 IRDF---FHITKYPTL 198
+DF + YP++
Sbjct: 114 AQDFVTDNGLD-YPSI 128
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 35.7 bits (83), Expect = 0.011
Identities = 27/127 (21%), Positives = 41/127 (32%), Gaps = 31/127 (24%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
LS + ++F+A WC C P + + A +Y VVA +N D +
Sbjct: 23 LSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQA----KYKAKGFQVVA-VNLDAKTGDAM 77
Query: 188 DF---------------------FHITKYPTLKII-RNG-LATRSEYRSQRTTEALLNFI 224
F + + PT +I RNG + + EAL I
Sbjct: 78 KFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI 137
Query: 225 AEELKDP 231
L
Sbjct: 138 LAALGGN 144
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 35.3 bits (82), Expect = 0.013
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
LS K +NF+ WC C P + + +VA +N E +
Sbjct: 21 LSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYK----HFKSQGVEIVA-VNVGESKIAVH 75
Query: 188 DF 189
+F
Sbjct: 76 NF 77
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 34.6 bits (79), Expect = 0.021
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 122 LRQNNFTEVLSQYKLAVVNFYADWCRF--CHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ ++ + L+Q VV +D R ++ E + ++P VA +
Sbjct: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGE----LLHEFPDY-TWQVAIAD 76
Query: 180 CDEEPRIRDFFHITKYPTLKIIRNG 204
++ I D F ++P + G
Sbjct: 77 LEQSEAIGDRFGAFRFPATLVFTGG 101
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 34.6 bits (80), Expect = 0.024
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 32/127 (25%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR--I 186
+ K+ ++NF+ C C P + +TA Y N V+A + +P +
Sbjct: 23 NADLQGKVTLINFWFPSCPGCVSEMPKIIKTAN----DYKNKNFQVLA-VAQPIDPIESV 77
Query: 187 RDF---------------------FHITKYPTLKII-RNGLATRSEYRSQRTTEALLNFI 224
R + F YPT +I + G Y + L I
Sbjct: 78 RQYVKDYGLPFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEI-LKTYVGEPDFGKLYQEI 136
Query: 225 AEELKDP 231
++
Sbjct: 137 DTAWRNS 143
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 35.6 bits (81), Expect = 0.027
Identities = 13/96 (13%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
++ + C +C + A + + ++ + E P I D + +
Sbjct: 139 RVHIETIITPSCPYCPYAVLLAHMFA--YEAWKQGNPVILSEAVEAYENPDIADKYGVMS 196
Query: 195 YPTLKIIRNGLATRSEYRSQRTTEALLNFIAEELKD 230
P++ I NG + E L+++ +
Sbjct: 197 VPSIAI--NG---YLVFVGVPYEEDFLDYVKSAAEG 227
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 34.2 bits (79), Expect = 0.035
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
L K ++ F+ C C P L + + + + V N + +
Sbjct: 26 LYDVQAKYTILFFWDSQCGHCQQETPKLYDWWL----KN-RAKGIQVYAANIERKD 76
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 33.2 bits (76), Expect = 0.075
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 131 LSQY--KLAVVNFYADWCRFCHL-LKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIR 187
L+ K+ V+ + C C + P+ ++ A +P+D V+ ++ E
Sbjct: 23 LADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRA----AFPEDKVAVLG-LHTVFEHHEA 77
Query: 188 D 188
Sbjct: 78 M 78
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 33.0 bits (76), Expect = 0.084
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIR 187
L+ K ++ +A WC C P L+E +Y + ++CD+ +
Sbjct: 25 LADLKGKYIYIDVWATWCGPCRGELPALKELEE----KY-AGKDIHFVSLSCDKNKKAWE 79
Query: 188 DFF---HITKYPTLK 199
+ +
Sbjct: 80 NMVTKDQLKGIQLHM 94
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 32.3 bits (74), Expect = 0.13
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 10/71 (14%)
Query: 131 LSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP----R 185
+ + +++F+ WC C P + +P D+ +V +N
Sbjct: 30 IPNKGQKTILHFWTSWCPPCKKELPQFQSFYD----AHPSDSVKLVT-VNLVNSEQNQQV 84
Query: 186 IRDFFHITKYP 196
+ DF K
Sbjct: 85 VEDFIKANKLT 95
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 32.3 bits (74), Expect = 0.13
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIR 187
L+ + K +V+F+ C +C P L +T + + ++ D E +
Sbjct: 24 LNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYN----AFKDKGFTIYG-VSTDRREEDWK 78
Query: 188 DFF 190
Sbjct: 79 KAI 81
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 32.3 bits (74), Expect = 0.14
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
K +++F++ C C P + E +Y QD VVA ++ D
Sbjct: 24 EQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRD----KY-QDQLNVVA-VHMPRSEDDLD 77
Query: 189 FFHITKY 195
I +
Sbjct: 78 PGKIKET 84
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 31.6 bits (72), Expect = 0.23
Identities = 14/71 (19%), Positives = 21/71 (29%), Gaps = 7/71 (9%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIR 187
+ KL F A WC P L E ++ + V DEE
Sbjct: 23 VKSLAGKLVFFYFSASWCPPARGFTPQLIEFYD----KFHESKNFEVVFCTWDEEEDGFA 78
Query: 188 DFFHITKYPTL 198
+F + +
Sbjct: 79 GYFAKMPWLAV 89
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 31.5 bits (72), Expect = 0.23
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ ++NF+A WC L+ +Y ++ + I+ D +
Sbjct: 34 RYLLLNFWASWCDPQPEANAELKRLNK----EYKKNKNFAMLGISLDIDR 79
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 30.8 bits (69), Expect = 0.27
Identities = 15/81 (18%), Positives = 18/81 (22%), Gaps = 20/81 (24%)
Query: 126 NFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR 185
L Q + A WC C K + V + C
Sbjct: 6 GLAAHLRQIG--GTMYGAYWCPHCQDQKELFGAAFDQVPY------------VECSPNGP 51
Query: 186 IRDF------FHITKYPTLKI 200
IT YPT I
Sbjct: 52 GTPQAQECTEAGITSYPTWII 72
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 32.3 bits (73), Expect = 0.31
Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 7/67 (10%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRD 188
L K+ +++F+A C C P + Y V+ ++ E +
Sbjct: 77 LKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQ----AYKDSGLAVIG-VHTPEYAFEKV 131
Query: 189 FFHITKY 195
++ K
Sbjct: 132 PGNVAKG 138
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 31.1 bits (71), Expect = 0.38
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIR 187
L K + F A WC C PVL E ++ V I+ DE E
Sbjct: 23 LGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYE----KHHVAKNFEVVLISWDENESDFH 78
Query: 188 DFFHITKYPTLKIIRNGLATRSE 210
D+ K P L + + +T SE
Sbjct: 79 DY--YGKMPWLALPFDQRSTVSE 99
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 31.2 bits (71), Expect = 0.39
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 135 KLAVVNFYADWCRFCHLLK--PVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
K ++NF+A W + L E +Y ++ + + I+ D +
Sbjct: 34 KSLLINFWASWNDSISQKQSNSELREIYK----KYKKNKYIGMLGISLDVDK 81
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 30.8 bits (70), Expect = 0.47
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 131 LSQY-KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP-RIRD 188
+ K AV+ F+A WC C P L A + V + + +
Sbjct: 26 PATVSKPAVIVFWASWCTVCKAEFPGLHRVAE----ET--GVPFYVISREPRDTREVVLE 79
Query: 189 F 189
+
Sbjct: 80 Y 80
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 30.5 bits (69), Expect = 0.53
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIR 187
L K F A WC P L + + + V I+ DE +
Sbjct: 23 LPSLAGKTVFFYFSASWCPPSRAFTPQLID----FYKAHAEKKNFEVMLISWDESAEDFK 78
Query: 188 DFFHITKYP 196
D++ +
Sbjct: 79 DYYAKMPWL 87
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 31.0 bits (70), Expect = 0.54
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%)
Query: 122 LRQNNFTEVLSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
LR+ T + K F A WC C P L E ++ + +
Sbjct: 34 LRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVE----FYEKHHDSKNFEIILAS 89
Query: 180 CDE-EPRIRDFFHITKYPTL 198
DE E ++ + ++
Sbjct: 90 WDEEEDDFNAYYAKMPWLSI 109
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 30.4 bits (69), Expect = 0.67
Identities = 7/56 (12%), Positives = 20/56 (35%), Gaps = 7/56 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
+ ++NF+A + L ++ +++ + I+ DE+
Sbjct: 27 FHNQLGRYTLLNFWAAYDAESRARNVQLANEVN----KF-GPDKIAMCSISMDEKE 77
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 30.4 bits (68), Expect = 0.74
Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
K +++F C C ++ + + +N V+ + D + + + I +
Sbjct: 48 KPVMLDFTGYGCVNCRKMELAVWTDPKVSSI---INNDYVLITLYVDNKTPLTEPVKIME 104
Query: 195 YPTLKIIRNGLATRSEYRSQR 215
T + +R S + +
Sbjct: 105 NGTERTLRTVGDKWSYLQRVK 125
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 29.6 bits (66), Expect = 0.80
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 135 KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDFFHITK 194
+L ++ F C +C + T + V Q+ P + +T
Sbjct: 19 ELRLLMFEQPGCLYCARWDAEIAP--QYPLTDEGRAAPVQRLQMRDPLPPGLELARPVTF 76
Query: 195 YPTLKIIRNG 204
PT ++
Sbjct: 77 TPTFVLMAGD 86
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 30.0 bits (68), Expect = 0.93
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP 184
L+ K+ +++F L E +Y + QI+ D +
Sbjct: 30 LTDLKGKVVLIDFTVYNNAMSAAHNLALRELYN----KY-ASQGFEIYQISLDGDE 80
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 29.8 bits (67), Expect = 1.3
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 19/81 (23%)
Query: 131 LSQY--KLAVVNFYADWCRFCHL-LKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPR-- 185
K+ VV + C C P ++ + V+ ++ E
Sbjct: 25 NEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHR----MIDESQVQVIG-LHSVFEHHDV 79
Query: 186 -----IRDF---FHITKYPTL 198
++ F F I +P
Sbjct: 80 MTPEALKVFIDEFGIK-FPVA 99
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 28.9 bits (64), Expect = 1.9
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 11/113 (9%)
Query: 120 KYLRQNNFTEVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQIN 179
+ + Q+N + + + + WC C +PV+ E + + Q+
Sbjct: 17 RAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLK----HISEGCVFIYCQVG 72
Query: 180 CDEEPR-----IRDFFHITKYPTLKIIRNGLATRSEYRSQRTTEALLNFIAEE 227
+ R +T PTL + + +E+
Sbjct: 73 EKPYWKDPNNDFRKNLKVTAVPTLLKYGTP--QKLVESECLQANLVEMLFSED 123
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 29.6 bits (65), Expect = 2.0
Identities = 20/89 (22%), Positives = 24/89 (26%), Gaps = 24/89 (26%)
Query: 138 VVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEPRIRDF------FH 191
+ A WC C K + V + C
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQVPY------------VECSPNGPGTPQAQECTEAG 248
Query: 192 ITKYPTLKIIRNGLATRSEYRSQRTTEAL 220
IT YPT I NG Y R+ EAL
Sbjct: 249 ITSYPTWII--NG----RTYTGVRSLEAL 271
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 29.1 bits (65), Expect = 2.1
Identities = 9/76 (11%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 135 KLAVVNF-YADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEEP--------- 184
K + F +DWC +C ++ ++ + ++ + + +++ ++
Sbjct: 48 KPIGLFFTGSDWCMWCIKMQ---DQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQK 104
Query: 185 --RIRDFFHITKYPTL 198
++ + +T +P L
Sbjct: 105 NQELKAQYKVTGFPEL 120
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal
thioredoxin-like domain, N-terminal beta-sheet,
fingerprint rigion, oxidoreductase; 1.90A {Escherichia
coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Length = 168
Score = 29.2 bits (66), Expect = 2.1
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 128 TEVLSQYKLAVVNFYADWCRFCHLLKPVLEE 158
+VL+Q K ++N +A WC C L +
Sbjct: 45 ADVLTQGKPVLLNVWATWCPTCRAEHQYLNQ 75
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron
transport, redox- active center, yeast, GRX1P,
transport; HET: PIA; 2.7A {Aequorea victoria}
Length = 362
Score = 29.7 bits (66), Expect = 2.1
Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 7/134 (5%)
Query: 56 TMTSKERRKALRLYGNAFYKDHSSTMGDSDHLTSLSSHVDDWLLSRNPVLCTHPLHYTNN 115
+ + L N + + S + + + +++ + H L+ + +
Sbjct: 181 QQNTPIGDGPVLLPDNHY-LCYQSALSKDPNEKRDHMVLLEFVTAAGITHGMHELYKSGS 239
Query: 116 TTRVKYLRQNNFTEVLSQYKLAVVNFYA-DWCRFCHLLKPVLEETAAIVDTQYPQDNQVV 174
+ + Q V + + +C + H L E + ++ +V
Sbjct: 240 GSGSGMVSQETIKHVKDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKV-----LV 294
Query: 175 VAQINCDEEPRIRD 188
+ + E I+
Sbjct: 295 LQLNDMKEGADIQA 308
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 29.5 bits (67), Expect = 2.2
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Query: 55 CTM---TSKERRKALRLYG 70
C M TS ERR+ L LYG
Sbjct: 101 CVMPENTSVERRQLLELYG 119
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 28.6 bits (64), Expect = 3.0
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 9/55 (16%)
Query: 131 LSQY--KLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDEE 183
L+ + ++ F A WC C + +L+ + ++ V I+
Sbjct: 32 LNNVGGDVVILWFMAAWCPSCVYMADLLDR-------LTEKYREISVIAIDFWTA 79
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 28.2 bits (63), Expect = 3.6
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 129 EVLSQYKLAVVNFYADWCRFCHLLKPVLEETAAIVDTQYPQDNQVVVAQINCDE-EPRIR 187
E L + F A WC C P+L + + + ++ D E +
Sbjct: 21 EALKDKDIIGFYFSAHWCPPCRGFTPILAD---MYSELVDDSAPFEIIFVSSDRSEDDMF 77
Query: 188 DFFHITKYP 196
+ +
Sbjct: 78 QYMMESHGD 86
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 28.8 bits (65), Expect = 4.0
Identities = 3/15 (20%), Positives = 5/15 (33%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
+ + RL G
Sbjct: 178 AA-EEFGKLLPRLLG 191
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 28.2 bits (64), Expect = 6.5
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
TM S ERRK L++ G
Sbjct: 98 TM-SVERRKVLKMLG 111
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 28.2 bits (64), Expect = 6.5
Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
TM S ERR LR YG
Sbjct: 98 TM-SLERRNLLRAYG 111
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 27.9 bits (63), Expect = 7.0
Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
M S+ER++ L+ +G
Sbjct: 95 QM-SEERKRVLKAFG 108
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 27.9 bits (63), Expect = 7.0
Identities = 9/15 (60%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
M S+ERR A+R YG
Sbjct: 94 NM-SQERRAAMRAYG 107
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 27.9 bits (63), Expect = 8.0
Identities = 6/15 (40%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 56 TMTSKERRKALRLYG 70
TM S ER+ ++ +G
Sbjct: 111 TM-SVERQMIMKAFG 124
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 27.3 bits (60), Expect = 8.2
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 133 QYKLAVVNFYADWCRFCHLLKPVLEETAAI 162
+ + ++ WC C + L+ +
Sbjct: 53 ERRYRLLVAGEMWCPDCQINLAALDFAQRL 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,703,458
Number of extensions: 465425
Number of successful extensions: 1269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1110
Number of HSP's successfully gapped: 188
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.6 bits)