Query psy9508
Match_columns 511
No_of_seqs 83 out of 85
Neff 3.8
Searched_HMMs 13730
Date Fri Aug 16 21:19:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9508.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9508hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1x64a2 g.39.1.3 (A:53-83) PDZ 6.3 90 0.0065 20.2 1.1 15 25-39 6-20 (31)
2 d1x62a1 g.39.1.3 (A:43-73) PDZ 3.7 94 0.0068 20.1 -0.2 15 25-39 6-20 (31)
3 d1sg1x3 g.24.1.1 (X:96-137) Lo 1.3 5.9E+02 0.043 16.9 1.3 13 30-43 27-39 (42)
4 d2nn6h2 b.84.4.2 (H:25-72) Rib 0.9 1.3E+03 0.094 15.5 2.1 25 13-38 2-26 (48)
5 d1zhva1 d.58.18.8 (A:2-61) Hyp 0.9 9.9E+02 0.072 16.7 1.4 22 1-22 33-54 (60)
6 d3ci0k2 a.60.16.1 (K:94-203) P 0.7 7.1E+02 0.052 18.6 0.1 27 184-212 60-86 (110)
7 d2fcaa1 c.66.1.53 (A:10-213) t 0.7 9.2E+02 0.067 19.6 0.5 14 26-39 132-145 (204)
8 d1yzha1 c.66.1.53 (A:8-211) tR 0.7 9.9E+02 0.072 19.4 0.7 14 26-39 134-147 (204)
9 d2rh2a1 b.34.4.1 (A:21-78) R67 0.6 1.1E+03 0.079 16.2 0.7 9 208-216 27-35 (58)
10 d1ux6a1 b.29.1.16 (A:937-1152) 0.6 1.1E+03 0.078 20.5 0.6 20 26-45 50-69 (216)
No 1
>d1x64a2 g.39.1.3 (A:53-83) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.29 E-value=90 Score=20.22 Aligned_cols=15 Identities=20% Similarity=0.249 Sum_probs=12.6
Q ss_pred ccccccCCceeeccc
Q psy9508 25 RTWTKQDGEIYFQTT 39 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~ 39 (511)
-.|||+-|-||+.++
T Consensus 6 g~NLKqrG~Ffv~~~ 20 (31)
T d1x64a2 6 NLNLKQKGYFFVEGE 20 (31)
T ss_dssp CCCTTTSCCEEETTE
T ss_pred ccChhhcceEEeccE
Confidence 359999999999874
No 2
>d1x62a1 g.39.1.3 (A:43-73) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=94 Score=20.15 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=12.3
Q ss_pred ccccccCCceeeccc
Q psy9508 25 RTWTKQDGEIYFQTT 39 (511)
Q Consensus 25 ~~~~~~~~~~~~~~~ 39 (511)
--|||+-|-||++++
T Consensus 6 g~NLKqrG~Ffve~~ 20 (31)
T d1x62a1 6 GTNLKQKGHFFVEDQ 20 (31)
T ss_dssp CCCHHHHCCEESSSC
T ss_pred ccChhhcceEEeccE
Confidence 358999999998874
No 3
>d1sg1x3 g.24.1.1 (X:96-137) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.33 E-value=5.9e+02 Score=16.90 Aligned_cols=13 Identities=15% Similarity=0.455 Sum_probs=8.7
Q ss_pred cCCceeecccCccc
Q psy9508 30 QDGEIYFQTTSATE 43 (511)
Q Consensus 30 ~~~~~~~~~~~~~e 43 (511)
++| +||.+.|+++
T Consensus 27 ~~G-tFSd~~Ss~~ 39 (42)
T d1sg1x3 27 PEG-TYSDEANHVD 39 (42)
T ss_dssp CTT-EECCSCBSSC
T ss_pred cCC-cccCcCCCcC
Confidence 456 7888877553
No 4
>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.88 E-value=1.3e+03 Score=15.53 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=18.1
Q ss_pred eeCCccccccccccccccCCceeecc
Q psy9508 13 EKTPERVKPQRRRTWTKQDGEIYFQT 38 (511)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (511)
+|.|.++--.+ ..||++-|-+...+
T Consensus 2 iv~PGe~It~~-~~~mrGHGTy~~~~ 26 (48)
T d2nn6h2 2 LVVPGDTITTD-TGFMRGHGTYMGEE 26 (48)
T ss_dssp BCCTTCBCCCC-TTCCBCTTEEECSS
T ss_pred EecCCcEeecC-CCeEcccccEecCC
Confidence 46787776555 78999999877543
No 5
>d1zhva1 d.58.18.8 (A:2-61) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=0.87 E-value=9.9e+02 Score=16.68 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=15.8
Q ss_pred CceeeccceeeeeeCCcccccc
Q psy9508 1 MIFVTSAHEEFTEKTPERVKPQ 22 (511)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (511)
|.||+++..+..+|-++-.-|.
T Consensus 33 f~sItrT~dELSvVC~~~~vP~ 54 (60)
T d1zhva1 33 FVSITRTDDELSIVCLIDRIPQ 54 (60)
T ss_dssp CCEEEECSSCEEEEEEGGGSCT
T ss_pred EEEEEecCCceEEEECcccCcc
Confidence 5688888888888866654443
No 6
>d3ci0k2 a.60.16.1 (K:94-203) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=0.72 E-value=7.1e+02 Score=18.59 Aligned_cols=27 Identities=7% Similarity=0.122 Sum_probs=18.6
Q ss_pred CCCCcccCCcccccCCCCCCCCCCCCCCC
Q psy9508 184 PEGDFERPEHQEYKKGERPTAYKPHDNLK 212 (511)
Q Consensus 184 pEG~F~~~ek~~y~p~eRp~~vr~~DNL~ 212 (511)
.|+.+|....+.|+++.++ +..-+-|+
T Consensus 60 AEd~~Y~~~~~py~~~n~~--l~s~sEL~ 86 (110)
T d3ci0k2 60 REDSEYLARSVPFYAANQP--LADISEMR 86 (110)
T ss_dssp CCHHHHHTSSSCBCCCCSC--CSSGGGGG
T ss_pred ccccchhhcCCCCCCCCCC--cCCHHHHh
Confidence 4678888888889888775 44444443
No 7
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}
Probab=0.66 E-value=9.2e+02 Score=19.65 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.8
Q ss_pred cccccCCceeeccc
Q psy9508 26 TWTKQDGEIYFQTT 39 (511)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (511)
.+||+.|.|++-|.
T Consensus 132 r~LkpgG~l~i~TD 145 (204)
T d2fcaa1 132 EVMGKGGSIHFKTD 145 (204)
T ss_dssp HHHTTSCEEEEEES
T ss_pred HhCCCCcEEEEEEC
Confidence 47999999999764
No 8
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}
Probab=0.66 E-value=9.9e+02 Score=19.42 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=11.9
Q ss_pred cccccCCceeeccc
Q psy9508 26 TWTKQDGEIYFQTT 39 (511)
Q Consensus 26 ~~~~~~~~~~~~~~ 39 (511)
.+||+.|.+|+-|.
T Consensus 134 ~~LkpgG~l~i~TD 147 (204)
T d1yzha1 134 RILPENGEIHFKTD 147 (204)
T ss_dssp HHSCTTCEEEEEES
T ss_pred HhCCCCcEEEEEEC
Confidence 58999999998773
No 9
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=0.62 E-value=1.1e+03 Score=16.24 Aligned_cols=9 Identities=56% Similarity=0.804 Sum_probs=6.4
Q ss_pred CCCCCCCCc
Q psy9508 208 HDNLKPEGE 216 (511)
Q Consensus 208 ~DNL~pEGe 216 (511)
+.||+|||-
T Consensus 27 ct~ltpegy 35 (58)
T d2rh2a1 27 CTNLTPEGY 35 (58)
T ss_dssp CCSSCSSEE
T ss_pred Eccccccce
Confidence 567888873
No 10
>d1ux6a1 b.29.1.16 (A:937-1152) Thrombospondin C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.59 E-value=1.1e+03 Score=20.52 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=14.6
Q ss_pred cccccCCceeecccCccccc
Q psy9508 26 TWTKQDGEIYFQTTSATEFT 45 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~ef~ 45 (511)
.++.-+|.||+.+++.+.|.
T Consensus 50 ~~Vdf~GTf~Vnt~~DDD~i 69 (216)
T d1ux6a1 50 NAVDFSGTFFINTERDDDYA 69 (216)
T ss_dssp SSEEEEEEEEECCSSCCCEE
T ss_pred ccEEEEEEEEECCCCCCCEE
Confidence 34556789999988877663
Done!