RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9508
(511 letters)
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 34.0 bits (78), Expect = 0.19
Identities = 32/243 (13%), Positives = 47/243 (19%), Gaps = 34/243 (13%)
Query: 244 GEFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEF----ERPEYPEFQ--KAERPKAFKP- 296
F+ D P + D+LYP E + + R
Sbjct: 27 ENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLD 86
Query: 297 HDNLKPEGDFERPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKP 356
+ P P G G PV
Sbjct: 87 KPDSLPASRELPPGPTPVPPGGFR---------GASSPRLGADSTSPRFLYQVNFPVILA 137
Query: 357 QDNLYPEGEFERPEYPEFQKAERPKAFK-PHDNLKPEGDFERPVKEKPKQAERVEAFKMK 415
E E E + ++ K + F + K + + K
Sbjct: 138 PIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLT--KKA 195
Query: 416 DNLKPEGDFEGRPK--------------DDYGPKVGDRAPVKKPQDNLYPEGEFE-RPEY 460
+ + DD V P LYP E P
Sbjct: 196 ARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVLYPPLLTEYVPYK 255
Query: 461 PGF 463
P
Sbjct: 256 PAC 258
>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). While some current members of
this family carry designations as putative alginate
lyase, it seems no sequence with a direct
characterization as such is detected by this model
[Energy metabolism, Fermentation].
Length = 336
Score = 31.2 bits (71), Expect = 1.3
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 26/101 (25%)
Query: 305 DFERPVKEKPKQGER----------VEPI--KVRDNLKPEGEFEGRPK----DDYG--PK 346
D + P KPK G R V P+ KVR + PE G+PK D G
Sbjct: 19 DIDLP---KPKPGGRDLLVEVKAISVNPVDTKVRARMAPE---AGQPKILGWDAAGVVVA 72
Query: 347 IGDRAPVKKPQDNLYPEGEFERP-EYPEFQKA-ERPKAFKP 385
+GD + KP D ++ G+ +RP EF ER KP
Sbjct: 73 VGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKP 113
>gnl|CDD|236164 PRK08142, PRK08142, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 30.4 bits (69), Expect = 2.0
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 28 TKQDGEIYFQTTSATEFTEHSTTDLRQAQVRHVDNLKTGG-------------------- 67
+ D + YF A S D ++RHVD+ +TGG
Sbjct: 43 SLADVDGYFCAGDAPGLGPASMVDYLGLKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCS 102
Query: 68 ----TFEGKPKDDYMPVTAERPKQQKPKDNLRPEGDFERP 103
T G+P+ + T R P+ FE P
Sbjct: 103 VALITLAGRPRSEGSSGTEPRNWGAD-----APDAPFEAP 137
>gnl|CDD|205178 pfam12988, DUF3872, Domain of unknown function, B. Theta Gene
description (DUF3872). Based on Bacteroides
thetaiotaomicron gene BT_2593, a conserved protein found
in a conjugate transposon. As seen in gene expression
experiments
(http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22
31). It appears to be upregulated in the presence of
host or other bacterial species vs when in culture.
Length = 137
Score = 28.8 bits (65), Expect = 3.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 309 PVKEKPKQGERVEPIKVRDNLKPEGEFEG 337
PV +K +GE VE +R LK EG F G
Sbjct: 39 PVPKKIVKGETVE---IRCELKREGRFSG 64
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 29.8 bits (68), Expect = 4.0
Identities = 17/130 (13%), Positives = 37/130 (28%)
Query: 109 EKGERPKAIKPKDNLKPEGEFERPVKEPLGPADRAPIIKHPDNLKLEGDFEDKPRPKAPE 168
E+ +R + K + E + A AP + + +A
Sbjct: 46 EEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAAR 105
Query: 169 RGERAPIRKPKDNLYPEGDFERPEHQEYKKGERPTAYKPHDNLKPEGEFERPIKEKPKQA 228
E A R + +P+ ++ K+ + R + K K+
Sbjct: 106 PAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKK 165
Query: 229 ERVEPFKVRD 238
++ R+
Sbjct: 166 QKPTEKIPRE 175
Score = 29.4 bits (67), Expect = 5.6
Identities = 19/143 (13%), Positives = 44/143 (30%), Gaps = 1/143 (0%)
Query: 192 EHQEYKKGERPTAYKPHDNLKPEGEFERPIKEKPKQAERVEPF-KVRDNLKTEGEFEGRP 250
E +E +K E + + E +E+ K + E RP
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98
Query: 251 KDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGDFERPV 310
+D + + A + + + +P+ + ++ + R
Sbjct: 99 AEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRR 158
Query: 311 KEKPKQGERVEPIKVRDNLKPEG 333
+ K K+ ++ R+ + PE
Sbjct: 159 RRKKKKKQKPTEKIPREVVIPET 181
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 29.4 bits (66), Expect = 6.2
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 157 DFEDKPRPKAPERGERAPIRKPKDNLYPEGDF 188
F PE P+++P D L EGDF
Sbjct: 334 LFLPDDIAARPELRFH-PLKQPGDALRLEGDF 364
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 29.0 bits (65), Expect = 7.0
Identities = 43/193 (22%), Positives = 65/193 (33%), Gaps = 39/193 (20%)
Query: 248 GRPKDDYG-PKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGDF 306
RP + YG P+ DR P QD L P RP YP +Q+ P G +
Sbjct: 115 RRPYEGYGGPRADDRPPGLPRQDQL-PTA---RPAYPAYQQRPEP------------GAW 158
Query: 307 ERPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAP--VKKPQ-DNLYPE 363
R + Q +R+ P P + DR P +P+ D +
Sbjct: 159 PRAADDYGWQQQRLGF--------PPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRD 210
Query: 364 GEFERPEY--PEFQKAERPKAFKPHDNLKPEGDFERPVKEKPKQAERVEAFKMKDNLKPE 421
+ RP++ P + +RP +P + P ER +A +
Sbjct: 211 YDHPRPDWDRPRRDRTDRP---------EPPPGAGHVHRGGPGPPERDDAPVVPIRPSAP 261
Query: 422 GDFEGRPKDDYGP 434
G +P GP
Sbjct: 262 GPLAAQPAPAPGP 274
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 28.8 bits (64), Expect = 9.6
Identities = 56/255 (21%), Positives = 92/255 (36%), Gaps = 27/255 (10%)
Query: 123 LKPEGEFERPVKEPLGPADRAPIIKHPDNLKLEGDFEDKPRPKAPERGERAPIRKPKDNL 182
+K + E VKE L A ++ D K + + + E GER + ++
Sbjct: 602 MKWNKQIELWVKEQLSRRPVAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGE 661
Query: 183 YPEGDFERPEHQEYK-----KGERPTAYKPHDNLKPEGEFERPIKEKPKQAERVEPFKVR 237
G+ E+ E K +GE P K + E E + + +AE VE
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Query: 238 DNLKTEGEFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPH 297
+ TE E E ++ G +V D EGE E E + +R
Sbjct: 722 EAEGTEDEGEIETGEE-GEEVEDEG-----------EGEAEGKHEVE-TEGDR------- 761
Query: 298 DNLKPEGDFERPVKEKPKQGE--RVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKK 355
+ EG+ E KE +GE E +++ + EG+ E + + G K +
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSET 821
Query: 356 PQDNLYPEGEFERPE 370
D+ + E E
Sbjct: 822 QADDTEVKDETGEQE 836
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.136 0.407
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,184,998
Number of extensions: 2741585
Number of successful extensions: 1571
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1534
Number of HSP's successfully gapped: 73
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (27.2 bits)