RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9508
         (511 letters)



>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
           {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
           1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
           1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
           2ga2_A* 2oaz_A*
          Length = 478

 Score = 30.3 bits (68), Expect = 1.7
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 78  MPVTAERPKQQKPKDNLRPEGDFERPTKVTPEKGERPKAIKPKDNLKPEGEFERPVKEPL 137
           M    E        +      D E     T E+  + K  K K +  P    E+   +  
Sbjct: 1   MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60

Query: 138 GPADRAPIIKHPDNLKLEGDFED---------------KPRPKAPERGERA---PIRKPK 179
           G +      +   +   + + ++               K + K  +RG +    P   P 
Sbjct: 61  GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPI 120

Query: 180 DNLYPEGDFERPEHQEYKKGE--RPTAYKPHDNLKPE 214
            +LYP G F + +  EY   +  R  A++     K  
Sbjct: 121 CDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKA 157


>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
           alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
           secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
           pneumoniae} PDB: 2xqx_A
          Length = 937

 Score = 29.5 bits (65), Expect = 2.9
 Identities = 17/205 (8%), Positives = 42/205 (20%), Gaps = 4/205 (1%)

Query: 192 EHQEYKKGERPTAYKPHDNLKPE---GEFERPIKEKPKQAERVEPFKVRDNLKTEGEFEG 248
            H  +        ++  +   PE      E    E        +     ++ +     + 
Sbjct: 6   HHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA 65

Query: 249 RPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAF-KPHDNLKPEGDFE 307
                        +      +        +  E      AE P A  KP  + + E   E
Sbjct: 66  EGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPE 125

Query: 308 RPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKPQDNLYPEGEFE 367
              +    +         ++      +   +       K      + K +     +    
Sbjct: 126 ATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAIN 185

Query: 368 RPEYPEFQKAERPKAFKPHDNLKPE 392
           R       +       +        
Sbjct: 186 RGSVVLASRRTGHLVNEKASKEAKV 210



 Score = 28.8 bits (63), Expect = 5.0
 Identities = 26/196 (13%), Positives = 52/196 (26%), Gaps = 6/196 (3%)

Query: 214 EGEFERPIKEKPKQAERVEPFKVRDNLKTEGEFEGRPKDDYGPKVGDRAPVKKPQDNLYP 273
             + E    +  + A         + +  E E      D        R    +  + +  
Sbjct: 11  HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70

Query: 274 EGEFERPEYPEFQKAERPKAFKPHDNLKPEGDFERPVKEKPKQGERVEPIKVRDNLKPEG 333
             E   P   E    E  +A       KPE      V E P    + +  K  +    + 
Sbjct: 71  ASETASPASNEAATTETAEAASA---AKPEEKASEVVAETPSAEAKPKSDKETE---AKP 124

Query: 334 EFEGRPKDDYGPKIGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEG 393
           E   +  +       ++   +   D      +  +P+  +F   E    ++P        
Sbjct: 125 EATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAI 184

Query: 394 DFERPVKEKPKQAERV 409
           +    V    +    V
Sbjct: 185 NRGSVVLASRRTGHLV 200


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.4 bits (62), Expect = 3.6
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 18/38 (47%)

Query: 404 KQAERVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAP 441
           KQA +    K++ +LK            Y     D AP
Sbjct: 19  KQALK----KLQASLKL-----------YAD---DSAP 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.5 bits (63), Expect = 6.3
 Identities = 7/14 (50%), Positives = 8/14 (57%)

Query: 422 GDFEGRPKDDYGPK 435
           G  +  P DDYG K
Sbjct: 531 GTLDINPDDDYGFK 544


>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
           complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
          Length = 438

 Score = 28.4 bits (63), Expect = 7.1
 Identities = 24/199 (12%), Positives = 60/199 (30%), Gaps = 1/199 (0%)

Query: 307 ERPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKPQ-DNLYPEGE 365
           +   K+K  + + VE  +     +P  E E        P+        +P+ ++L    +
Sbjct: 3   KSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADPLD 62

Query: 366 FERPEYPEFQKAERPKAFKPHDNLKPEGDFERPVKEKPKQAERVEAFKMKDNLKPEGDFE 425
            E P   +    E     +  +   P+     PV++   +  +V    +++ +      E
Sbjct: 63  LEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVPLLTLEEEIDLARKVE 122

Query: 426 GRPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPGFQKGERPKAFKPHDNLKPEGDFE 485
              +             +  ++ +  +              E+P      +         
Sbjct: 123 EGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLP 182

Query: 486 RPVKEKPKQAEKVEAFKMK 504
           + +K     A + EA +  
Sbjct: 183 KELKRYLHIAREGEAARQH 201


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0479    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,930,239
Number of extensions: 499397
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 22
Length of query: 511
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,965,535
Effective search space: 1637765955
Effective search space used: 1637765955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.1 bits)