RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9508
         (511 letters)



>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 244

 Score = 29.3 bits (65), Expect = 1.1
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 4  VTSAHEEFTEKTPERVKPQRRRTWTKQDGEIYFQTTSATEFTEHSTTDLRQAQVRHVDNL 63
          +  +H E  + T E +     +T T  +    +Q+ S     +     +  A    V+  
Sbjct: 12 IIKSHLETCQYTMEELHQLAWQTHT-YEEIKAYQSKSREALWQQCAIQITHAIQYVVEFA 70

Query: 64 KTGGTFEGKPKDDYM 78
          K    F    ++D +
Sbjct: 71 KRITGFMELCQNDQI 85


>d2iqha1 e.75.1.1 (A:21-489) Nucleocapsid protein {Influenza A
          virus [TaxId: 11320]}
          Length = 469

 Score = 27.2 bits (60), Expect = 4.8
 Identities = 8/37 (21%), Positives = 11/37 (29%)

Query: 44 FTEHSTTDLRQAQVRHVDNLKTGGTFEGKPKDDYMPV 80
          F E     L +      D  KTGG    +    +   
Sbjct: 51 FDERRNKYLEEHPSAGKDPKKTGGPIYRRVDGKWRRE 87


>d1mw9x_ e.10.1.1 (X:) DNA topoisomerase I, 67K N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 591

 Score = 26.4 bits (57), Expect = 9.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 59  HVDNLKTGGTFEGKPKDDYMPVTAERPKQQKPKDNLR-----PEGDFERPTKVTPEKGER 113
           H+ +L T G+   K  D     TA++PK+ +    +      P  ++E   +V P K + 
Sbjct: 32  HIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKV 91

Query: 114 PKAIK 118
              +K
Sbjct: 92  VSELK 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,977,097
Number of extensions: 103067
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 4
Length of query: 511
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 422
Effective length of database: 1,185,626
Effective search space: 500334172
Effective search space used: 500334172
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.3 bits)