BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9509
(231 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|195014606|ref|XP_001984044.1| GH15223 [Drosophila grimshawi]
gi|193897526|gb|EDV96392.1| GH15223 [Drosophila grimshawi]
Length = 675
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/225 (44%), Positives = 142/225 (63%), Gaps = 11/225 (4%)
Query: 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQP 64
GV + + +Y +P +LLFSATLS DPEKL L LFQPKLFT+V T P
Sbjct: 339 GVQAPLCYQELLNSYGKQPHKLLFSATLSQDPEKLQNLRLFQPKLFTTVF----TLPVLP 394
Query: 65 TSSE-AGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
++ + A SS FIGK+TTP EL+E+ LKPL LY +++ + + LCF N+A
Sbjct: 395 SALDIAELPEQSSQFIGKYTTPTELTEQYCVTELRLKPLTLYTMVQTYGWKRFLCFTNSA 454
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
A RLA +L H+ G+ + + E+ +++K R + + +F + I +V SD L
Sbjct: 455 DTADRLAFVLKHLFQ------GSPITVEELSANMKVGVRARRLADFAKGSIHGLVCSDAL 508
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
ARGIDV N+D+V++YEAP +IK YIHR+GRTAR G++GT++TL+T
Sbjct: 509 ARGIDVPNVDIVLSYEAPRHIKTYIHRVGRTARAGQKGTAITLLT 553
>gi|195376467|ref|XP_002047018.1| GJ12159 [Drosophila virilis]
gi|194154176|gb|EDW69360.1| GJ12159 [Drosophila virilis]
Length = 680
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/228 (44%), Positives = 142/228 (62%), Gaps = 13/228 (5%)
Query: 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE-PA---GTG 60
GV + + +Y +P +LLFSATLS DPEKL L LFQPKLFT+V+ PA G G
Sbjct: 343 GVQAPLCYQELLNSYGKQPHKLLFSATLSQDPEKLQNLRLFQPKLFTTVLTMPALQLGLG 402
Query: 61 DTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFV 120
+ + E G + SS FIGK+TTPAEL+E+ LKPL LY ++ + + LCF
Sbjct: 403 NAE--QPEQGVEQ-SSQFIGKYTTPAELTEQYCLTEMRLKPLTLYAMVLLNGWKRFLCFT 459
Query: 121 NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180
N+A A+RLA +L + G+ + E+ + + R + + EF R I ++ S
Sbjct: 460 NSADTANRLAFVLQQL------FGGSPTRVEELSAKMSAAMRAQRLTEFARGSIHGLICS 513
Query: 181 DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
D LARGIDV N+D+V++YEAP +IK YIHR+GRTAR G +GT++TL+T
Sbjct: 514 DALARGIDVPNVDIVVSYEAPRHIKTYIHRVGRTARAGHKGTAITLLT 561
>gi|194750630|ref|XP_001957633.1| GF10505 [Drosophila ananassae]
gi|190624915|gb|EDV40439.1| GF10505 [Drosophila ananassae]
Length = 683
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 98/215 (45%), Positives = 141/215 (65%), Gaps = 11/215 (5%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ ++P +LLFSATLS DPEKL L LFQP+LFT+V+ +PT E A+ + G
Sbjct: 350 SFGNQPHKLLFSATLSQDPEKLQNLRLFQPRLFTTVMPVL----REPTGEEGDAEADTDG 405
Query: 78 -FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
F+GK+TTPAEL+E++ LKPL LY L+ K+ + LCF N+ A RLA ++
Sbjct: 406 QFLGKYTTPAELTEQICITEMRLKPLTLYALVEKYKWKRFLCFTNSTDQASRLAFVM--- 462
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AT ++ +AE+ +L R + ++ F KI+ ++ SD LARGIDV +IDVV+
Sbjct: 463 ---ATLFENSETKVAELSGNLSALVRKQNLKSFANGKINGLICSDALARGIDVADIDVVL 519
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+YEAP +IK +IHR+GRTAR GR+GT+VTL+T +
Sbjct: 520 SYEAPRHIKTHIHRVGRTARAGRKGTAVTLLTEQD 554
>gi|328702076|ref|XP_001949723.2| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 128/209 (61%), Gaps = 4/209 (1%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R QRLLFSATL+ DPEKL L LF+PKLFTS+++ T PT + + + F+
Sbjct: 257 PQRTQRLLFSATLTQDPEKLKFLKLFEPKLFTSIIKRKNTQ--LPTDTTGTDEPVRGDFV 314
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK+TTP EL E + C KPL LY LIR ++ V+CFV + HRL RLL +
Sbjct: 315 GKYTTPKELKEYMVLCPEENKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEF 374
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T + ++N E+ SD+ + I++F KID+++ +D+LARGID+E I VI Y
Sbjct: 375 DTNNSPLRVN--EISSDVTQKAHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYN 432
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P K YIHRIGRTAR G +G ++T VT
Sbjct: 433 VPKYPKNYIHRIGRTARAGHKGKAITFVT 461
>gi|193596603|ref|XP_001949748.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Acyrthosiphon pisum]
Length = 528
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/209 (45%), Positives = 128/209 (61%), Gaps = 4/209 (1%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R QRLLFSATL+ DPEKL L LF+PKLFTS+++ T PT + + + F+
Sbjct: 257 PQRTQRLLFSATLTQDPEKLKFLKLFEPKLFTSIIKRKNTQ--LPTDTTGTDEPVRGDFV 314
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK+TTP EL E + C KPL LY LIR ++ V+CFV + HRL RLL +
Sbjct: 315 GKYTTPKELKEYMVLCPEENKPLTLYHLIRSKGLKRVICFVKSKIEVHRLTRLLCKLSEF 374
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T + ++N E+ SD+ + I++F KID+++ +D+LARGID+E I VI Y
Sbjct: 375 DTNNSPLRVN--EISSDVTQKAHSGYIKQFSNGKIDVLICTDSLARGIDIELISCVILYN 432
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P K YIHRIGRTAR G +G ++T VT
Sbjct: 433 VPKYPKNYIHRIGRTARAGHKGKAITFVT 461
>gi|198463449|ref|XP_001352828.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
gi|198151259|gb|EAL30329.2| GA21960 [Drosophila pseudoobscura pseudoobscura]
Length = 697
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 137/228 (60%), Gaps = 8/228 (3%)
Query: 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE-PAGTGDTQ 63
G + + + + TY P +LLFSAT+S DPEKL L LFQPKLFT+V P D Q
Sbjct: 341 GTQPPLCLKELYATYGKVPHKLLFSATMSQDPEKLQNLRLFQPKLFTTVFALPVPKSDEQ 400
Query: 64 PTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
E N + F GK+TTP EL+E+ +KPL L+ L+ K+ + LCF N+
Sbjct: 401 ADGDEETTPN-TGHFAGKYTTPVELTEQFCVTELRIKPLTLFALVEKYQWKRFLCFTNST 459
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
+ A+RLA ++ + + +AE+ L R K + +F R +I+ ++ SD L
Sbjct: 460 ETANRLAFVMGKLFSTGP------TKVAELSGKLSALVRTKTLSDFARGRINGLICSDAL 513
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ARGIDV ++DVV++YE P +IK YIHR+GRTAR GR+GT+VTL+T E
Sbjct: 514 ARGIDVADVDVVLSYETPRHIKTYIHRVGRTARAGRKGTAVTLLTEQE 561
>gi|195127527|ref|XP_002008220.1| GI11933 [Drosophila mojavensis]
gi|193919829|gb|EDW18696.1| GI11933 [Drosophila mojavensis]
Length = 670
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/224 (43%), Positives = 138/224 (61%), Gaps = 9/224 (4%)
Query: 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQP 64
GV + + ++ +P +LLFSATLS DPEKL L LFQPKLFT+ + QP
Sbjct: 342 GVQAPLCYQELLNSWGKQPHKLLFSATLSQDPEKLQNLRLFQPKLFTTTL---TMPVLQP 398
Query: 65 TSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQ 124
+ +S FIGK+TTPAEL+E+ LKPL LY ++ + + LCF N+A
Sbjct: 399 ALDNGELPDQTSTFIGKYTTPAELTEQYCVTEMRLKPLTLYAMVLLNNWKRFLCFTNSAD 458
Query: 125 GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
A+RLA +L H+ +T + + E+ + + +R + EF R I +V SD LA
Sbjct: 459 TANRLACVLVHLFKDST------IRVKELSAKMSATKRGHRLSEFARGNIHGLVCSDALA 512
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
RGIDV N+DVV++YEAP +IK YIHR+GRTAR G++GT++TL+T
Sbjct: 513 RGIDVPNVDVVVSYEAPRHIKTYIHRVGRTARAGQKGTAITLLT 556
>gi|242019954|ref|XP_002430423.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212515553|gb|EEB17685.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 518
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 136/222 (61%), Gaps = 15/222 (6%)
Query: 10 VIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEA 69
++ ++ L P +LLFSATLS DPEKL L LF P+LFTSVVE + +
Sbjct: 233 IVSYNNILNQKRPPNKLLFSATLSQDPEKLQALGLFHPRLFTSVVESGKSTEKN------ 286
Query: 70 GADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
+N S FIGK+TTPAEL E T CS KPL+L+ L+ + + +LCFVN++ +L
Sbjct: 287 --NNDESKFIGKYTTPAELKEYYTVCSKVNKPLLLHHLLISKSWKNILCFVNSSAATFKL 344
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
A +L K K + ++ +++ +RN+I+Q F K+D++++SD LARGID+
Sbjct: 345 AFILK-------KLCKKKYTVQQLSANIVQSKRNRILQNFENGKVDILISSDALARGIDI 397
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ V++Y+ P +K Y+HRIGRT R G++G S+ +T+ E
Sbjct: 398 PNVKYVVSYDCPKFVKTYVHRIGRTGRAGKEGHSLAFLTSKE 439
>gi|195495021|ref|XP_002095090.1| GE22191 [Drosophila yakuba]
gi|194181191|gb|EDW94802.1| GE22191 [Drosophila yakuba]
Length = 681
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 131/211 (62%), Gaps = 7/211 (3%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ +P +LLFSATLS DPEKL L LFQP+LFT+V+ D ++ A+
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQNLRLFQPRLFTTVLTMPVLKDVTEGDADTEANTDPGQ 408
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
F+G++TTPAEL+E+ LKPL +Y L+ K+ + LCF N++ A RL +L +
Sbjct: 409 FVGRYTTPAELTEQYCVTELRLKPLTVYALVEKYQWKRFLCFTNSSDQASRLTFVLSLLF 468
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
TK +AE+ +L R ++ F KI+ +V SD LARGIDV ++DVV++
Sbjct: 469 QNGTK-------VAELSGNLSAKIRKTTLRNFSAGKINGLVCSDALARGIDVADVDVVLS 521
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
YE P +I YIHR+GRTAR GR+GT+VTL+T
Sbjct: 522 YEIPRHITTYIHRVGRTARAGRKGTAVTLLT 552
>gi|91092858|ref|XP_969365.1| PREDICTED: similar to ATP-dependent RNA helicase DDX51 [Tribolium
castaneum]
gi|270003080|gb|EEZ99527.1| hypothetical protein TcasGA2_TC000109 [Tribolium castaneum]
Length = 601
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/210 (43%), Positives = 130/210 (61%), Gaps = 21/210 (10%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTS-VVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
PQ+LLFSATL+ DPEK+ +LSLFQPKLFTS VVE + + +P GK
Sbjct: 340 PQKLLFSATLTQDPEKIEKLSLFQPKLFTSSVVENSNESEEKPMI-----------LTGK 388
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+TTP EL+EK CS ++KPLVLY +++ + L F ++ + AHRL LL +
Sbjct: 389 YTTPKELTEKYIVCSKDVKPLVLYAFLKRENLTKTLVFTHSVESAHRLKILLKSL----- 443
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
++ I E+ S+LK R++ I F + ++DL++ +D LARGID+ ++ VI+Y AP
Sbjct: 444 --FKKRLKIEEISSNLKGKSRDEFISSFTKGEVDLLICTDFLARGIDLPGVNCVISYSAP 501
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K YIHR GRTAR G G +VTL+ HE
Sbjct: 502 KYLKTYIHRAGRTARAGESGLAVTLL--HE 529
>gi|195328224|ref|XP_002030816.1| GM24369 [Drosophila sechellia]
gi|194119759|gb|EDW41802.1| GM24369 [Drosophila sechellia]
Length = 687
Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 134/214 (62%), Gaps = 6/214 (2%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ +P +LLFSATLS DPEKL L LFQP+LF +V+ D S+ A
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGSDTEALTDPGQ 408
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 409 FVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVL---- 464
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V + T N++E+ +L R + +++F KI+ ++ SD LARGIDV ++DVV++
Sbjct: 465 KVLFQKYST--NVSELSGNLSAKVRKERLRDFAAGKINGLICSDALARGIDVADVDVVLS 522
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
YE P +I YIHR+GRTAR GR+GT+VTL+T ++
Sbjct: 523 YEIPRHITTYIHRVGRTARAGRKGTAVTLLTEYD 556
>gi|17136666|ref|NP_476833.1| dead box protein 73D [Drosophila melanogaster]
gi|12644178|sp|P26802.3|DDX51_DROME RecName: Full=Probable ATP-dependent RNA helicase Dbp73D;
Short=DEAD box protein 73D
gi|4972732|gb|AAD34761.1| unknown [Drosophila melanogaster]
gi|7294064|gb|AAF49419.1| dead box protein 73D [Drosophila melanogaster]
gi|33589494|gb|AAQ22514.1| LD27814p [Drosophila melanogaster]
Length = 687
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 14/218 (6%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS-- 75
++ +P +LLFSATLS DPEKL L LFQP+LF +V+ D ++E GAD +
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKD----ATEEGADTEALT 404
Query: 76 --SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 405 DPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVL 464
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
V + TK ++E+ +L RN+ +++F KI+ ++ SD LARGIDV ++D
Sbjct: 465 ----KVLFQKYSTK--VSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVD 518
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VV++YE P +I YIHR+GRTAR GR+GT+VT++T +
Sbjct: 519 VVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
>gi|195428034|ref|XP_002062080.1| GK17342 [Drosophila willistoni]
gi|194158165|gb|EDW73066.1| GK17342 [Drosophila willistoni]
Length = 681
Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 135/215 (62%), Gaps = 13/215 (6%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE-PAGTGDTQPTSSEAGADNLSS 76
++ +P +LLFSATLS DPEKL L LFQPKLFT+V+ P + E D++
Sbjct: 352 SFGKQPHKLLFSATLSQDPEKLQNLRLFQPKLFTTVLNLPVFQLN------EGKTDSVQD 405
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+GK+TTPAEL+E+ LKPL L+ LI+++ + LCF N+A A+RLA +L +
Sbjct: 406 QIVGKYTTPAELTEQYCVTEMRLKPLTLFALIQQYKWKRFLCFSNSADTANRLAFVLKIL 465
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ + E+ ++ +R+ + F R KI+ ++ SD LARGIDV ++D+VI
Sbjct: 466 ------FQSYDITVEELSGNMSALERSTTLNNFARGKINGLICSDALARGIDVADVDIVI 519
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+YEA +IK YIHR+GRTAR G+ GT+VTL++ +
Sbjct: 520 SYEAARHIKTYIHRVGRTARAGKLGTAVTLLSDQD 554
>gi|195590910|ref|XP_002085187.1| GD12444 [Drosophila simulans]
gi|194197196|gb|EDX10772.1| GD12444 [Drosophila simulans]
Length = 687
Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 134/214 (62%), Gaps = 6/214 (2%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ +P +LLFSATLS DPEKL L LFQP+LF +V+ D S+ A
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGSDTEALTDPGQ 408
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 409 FVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVLE--- 465
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V + TK ++E+ +L R + +++F KI+ ++ SD LARGIDV ++DVV++
Sbjct: 466 -VLFQKYNTK--VSELSGNLSAKVRKERLRDFAAGKINGLICSDALARGIDVADVDVVLS 522
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
YE P +I YIHR+GRTAR GR+GT+VTL+T ++
Sbjct: 523 YEIPRHITTYIHRVGRTARAGRKGTAVTLLTEYD 556
>gi|194872386|ref|XP_001973017.1| GG15853 [Drosophila erecta]
gi|190654800|gb|EDV52043.1| GG15853 [Drosophila erecta]
Length = 687
Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 133/214 (62%), Gaps = 6/214 (2%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ +P +LLFSATLS DPEKL L LFQP+LFT+V+ D ++ A
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQNLRLFQPRLFTTVLTMPVLKDITEGEADTEAHTDPGQ 408
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 409 FVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQASRLTFVL---- 464
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V K T ++E+ +L R + +++F KI+ ++ SD LARGIDV ++DVV++
Sbjct: 465 KVLFKKYST--IVSELSGNLSARVRKEKLKDFSAGKINGLICSDALARGIDVADVDVVLS 522
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
YE P +I YIHR+GRTAR GR+GT+VTL+T +
Sbjct: 523 YETPRHITTYIHRVGRTARAGRKGTAVTLLTEQD 556
>gi|499204|gb|AAC14192.1| D-E-A-D box protein [Drosophila melanogaster]
Length = 644
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 14/218 (6%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS-- 75
++ +P +LLFSATLS DPEKL L LFQP+LF +V+ D ++E GAD +
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKD----ATEEGADTEALT 404
Query: 76 --SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 405 DPGQFVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVL 464
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
V + TK ++E+ +L RN+ +++F KI+ ++ SD LARGIDV ++D
Sbjct: 465 ----KVLFQKYSTK--VSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVD 518
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VV++YE P +I YIHR+GRTAR GR+GT+VT++T +
Sbjct: 519 VVLSYETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
>gi|158286571|ref|XP_308815.4| AGAP006941-PA [Anopheles gambiae str. PEST]
gi|157020531|gb|EAA04138.4| AGAP006941-PA [Anopheles gambiae str. PEST]
Length = 655
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 127/211 (60%), Gaps = 8/211 (3%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAG-TGDTQPTSSEAGADNLSSGFIG 80
+P +LLFSAT D EKL L LF PKLFT+V++P T Q T++ A+ F G
Sbjct: 382 QPHKLLFSATFKRDAEKLKTLKLFHPKLFTAVIDPQERTMMAQSTATTQAAEPRRGNFAG 441
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++TTPAEL E + KPL LY LIR++ + L F N +HRL+ +L +
Sbjct: 442 QYTTPAELKECICLTEQRSKPLTLYGLIRENGYRKFLVFTNGINTSHRLSFVLQRL---- 497
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
GT M I E S L R ++ F K++ ++ +D LARGID+ENI+VVI+Y+
Sbjct: 498 ---FGTDMVIEEWSSSLSPATRKSVLNRFSLGKVNGIICTDALARGIDIENIEVVISYDM 554
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++I KYIHRIGRTAR G +GT++TL+ E
Sbjct: 555 PNHIDKYIHRIGRTARAGLRGTAITLLAEDE 585
>gi|443730193|gb|ELU15819.1| hypothetical protein CAPTEDRAFT_183322 [Capitella teleta]
Length = 576
Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 124/204 (60%), Gaps = 23/204 (11%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS +PE L Q+ LFQP+LFT A G + + E+ I K+
Sbjct: 342 QKLLFSATLSQNPEVLQQMRLFQPRLFT-----ASEGTDESSQMES---------INKYV 387
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TPA L+E C N KPLVL+ LI + VLCF N+ + HRL LL +
Sbjct: 388 TPASLNEMFIKCEENTKPLVLFHLIHTRKYRQVLCFTNSVKSTHRLCTLLRLMG------ 441
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K+++ E+ S + ++R K +++F KI++VV SD +ARG+D+EN VI+Y+ P+
Sbjct: 442 ---KVSVEELSSHISINKRQKTLKKFAAGKIEIVVCSDQMARGMDIENAKCVISYDVPNF 498
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
I+ Y+HR+GRTARGG G+++TL+
Sbjct: 499 IQNYVHRVGRTARGGHAGSAITLL 522
>gi|322792436|gb|EFZ16420.1| hypothetical protein SINV_14603 [Solenopsis invicta]
Length = 261
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 132/209 (63%), Gaps = 15/209 (7%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL +L LFQP+LFT+VV T + D ++ F+G++T
Sbjct: 8 QKLLFSATLSQDPEKLSRLGLFQPRLFTTVVTDKDT--------DVNLDKIAGDFVGRYT 59
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+PAEL+E C + KP+ LYQL+ +H + L F N+ Q AHRLA L+ +
Sbjct: 60 SPAELTELAVECLPSYKPIALYQLLTRHDIIPKTLVFTNSGQTAHRLALLMQSL------ 113
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L QR ++ +F +I ++++SD LARG+D+ ++ +V++Y+ P
Sbjct: 114 LSERNVTVGELSAQLAPKQRESVLGKFANAEIHVLISSDALARGLDILDVQLVVSYDCPK 173
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+IK YIHR GRT R G+ GT+V+++T ++
Sbjct: 174 HIKGYIHRAGRTGRAGKPGTAVSILTANQ 202
>gi|312376445|gb|EFR23526.1| hypothetical protein AND_12724 [Anopheles darlingi]
Length = 749
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 23/222 (10%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEP---------AGTGDTQPTSSEAG 70
P +P +LLFSATLS DPEKL LF PKLFT+V +P +G G T+ +
Sbjct: 362 PQQPHKLLFSATLSRDPEKLQTFKLFHPKLFTAVRDPTERAIALSKSGAGSTKQNAL--- 418
Query: 71 ADNLSSG-FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
L G FIG++TTP+EL E + +KPL L+ LIR+ + L F N G+HRL
Sbjct: 419 ---LRRGKFIGQYTTPSELRELVCYTQFRIKPLTLFALIRQAGYRKFLVFTNGIDGSHRL 475
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
+ +L + GT+M I E S L R ++ F K++ ++ +D LARG D+
Sbjct: 476 SFVLQRL-------FGTEMVIEEWSSSLTPATRRSVLHRFSLGKVNGIICTDALARGFDI 528
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++I++V++Y+ P +I YIHRIGRTAR G +GTS+TL+ E
Sbjct: 529 DDIEIVVSYDMPRHISTYIHRIGRTARAGNRGTSITLLIDEE 570
>gi|321459585|gb|EFX70637.1| hypothetical protein DAPPUDRAFT_112535 [Daphnia pulex]
Length = 721
Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 132/221 (59%), Gaps = 26/221 (11%)
Query: 13 WDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD 72
W+ ++ Q+LLFSATLS DPEKL +L LFQPKLFTSVV T S AD
Sbjct: 433 WEKYV------QKLLFSATLSQDPEKLTRLGLFQPKLFTSVVS---------TESAESAD 477
Query: 73 NL--SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
N S F+GKFTTPAEL+E C LKPL +Y L++K LCF N+ HRL
Sbjct: 478 NTIQSHHFVGKFTTPAELTEHFFKCPPMLKPLAVYCLLKKFKYHSALCFTNSRSATHRLC 537
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
LL + + +AE S++ R+K++++F KIDL+V +D ++RG+D+
Sbjct: 538 ELLKQFGD---------LKVAECSSEISKAPRDKLLKDFSTGKIDLLVCTDAVSRGMDLG 588
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D VI+Y++P +K YIHR GR AR GR GT++T++ E
Sbjct: 589 VVDCVISYDSPKYVKNYIHRAGRAARAGRPGTAITILMDSE 629
>gi|390348197|ref|XP_797208.3| PREDICTED: uncharacterized protein LOC592601 [Strongylocentrotus
purpuratus]
Length = 997
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 87/217 (40%), Positives = 124/217 (57%), Gaps = 18/217 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT--------GDTQPTSSEAGA-DNL 74
Q+LLFSATLS +PEKL QL LFQP+L T+ G+ + E D
Sbjct: 562 QKLLFSATLSQNPEKLTQLRLFQPRLITTATSSRAPPISAWHLDGEKEGVKEEGKEKDEG 621
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ F+GK+TTP LSE C+ KPLVL + + VLCF N+ Q HRL LL
Sbjct: 622 RTDFVGKYTTPVGLSEYFVQCTAGEKPLVLQHFLLNLYFKQVLCFTNSVQTTHRLYLLLK 681
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ +V ++E S+L +R I+++F+ KI ++V SD +ARG+D+EN+
Sbjct: 682 LMGDV---------EVSEFSSNLSQSERQNILKQFKAGKIQILVCSDAMARGMDIENVRC 732
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VI+Y+ P ++K YIHR+GRTAR GR GT+ + + E
Sbjct: 733 VISYDLPPHLKTYIHRVGRTARAGRGGTAFSFIRKKE 769
>gi|332018269|gb|EGI58874.1| Putative ATP-dependent RNA helicase Dbp73D [Acromyrmex echinatior]
Length = 761
Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 129/209 (61%), Gaps = 15/209 (7%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL +L LFQPKLFT+VV + D ++ FIG++T
Sbjct: 500 QKLLFSATLSQDPEKLSRLGLFQPKLFTTVVTDKDI--------DINLDKVAGDFIGRYT 551
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL+E C + KP+VLYQL+ KH + L F N+ Q AHRLA +
Sbjct: 552 SPGELTELAVECPPSYKPIVLYQLLTKHDIIPKTLVFTNSGQHAHRLAL------LMQLL 605
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L QR I+ +F KI ++++SD LARG+D+ ++ +V++Y+ P
Sbjct: 606 LSEWNVTVGELSAQLASKQREDILSKFANGKIHVLISSDALARGLDILDVQLVVSYDLPK 665
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+IK YIHR GRT R G+ GT+V+++T ++
Sbjct: 666 HIKGYIHRAGRTGRAGKSGTAVSILTPNQ 694
>gi|449281559|gb|EMC88606.1| ATP-dependent RNA helicase DDX51, partial [Columba livia]
Length = 489
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 123/212 (58%), Gaps = 22/212 (10%)
Query: 18 TYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVV-EPAGTGDTQPTSSEAGADNLS 75
YP P Q+LLFSATL+ DPEKL QL+LFQP+LFTSV E G+ T +
Sbjct: 249 CYPQIPLQKLLFSATLTQDPEKLQQLNLFQPRLFTSVYSEKKSLGEGTETEQDT------ 302
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
K+T P LS+ C N KPL+L + VLCF N+ + +HRL L+
Sbjct: 303 -----KYTLPEGLSQCYVPCDLNSKPLLLLHFMLTMKFSRVLCFTNSREASHRLFLLVQ- 356
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
A ++ +AE S L ++R + ++EF + KI L++++D ARGID++ ++ V
Sbjct: 357 --------AFGRVTVAEFSSRLSPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNYV 408
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+AP I+ YIHR+GRTAR G G + +LV
Sbjct: 409 INYDAPQFIRTYIHRVGRTARAGEVGVAFSLV 440
>gi|326929902|ref|XP_003211092.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Meleagris
gallopavo]
Length = 582
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 120/213 (56%), Gaps = 24/213 (11%)
Query: 19 YPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVV---EPAGTGDTQPTSSEAGADNL 74
YP P Q+LLFSATL+ DPEKL QL LFQP LFTSV +P G SE
Sbjct: 333 YPQIPLQKLLFSATLTQDPEKLQQLGLFQPCLFTSVYSEKKPLRDGTETEQDSEE----- 387
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
K+T P ELS+ C N KPL+L + VLCF N+ + +HRL L+
Sbjct: 388 ------KYTLPEELSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQ 441
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ +AE S L ++R + ++EF + KI L++++D ARGID++ ++
Sbjct: 442 AFGGI---------TVAEFSSRLPPNERKRTLKEFEQGKIQLLISTDATARGIDIKGVNC 492
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
VINY+ P I+ YIHR+GRTAR G+ G + ++V
Sbjct: 493 VINYDTPQFIRTYIHRVGRTARAGKAGLAFSMV 525
>gi|357628805|gb|EHJ77980.1| putative ATP-dependent RNA helicase DDX51 [Danaus plexippus]
Length = 625
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 123/215 (57%), Gaps = 22/215 (10%)
Query: 13 WDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD 72
W + S +LLFSATLS DPE L + LFQPKLF+++ D
Sbjct: 346 WVGLNSQRSSVHKLLFSATLSPDPELLEEWGLFQPKLFSAI---------------PIQD 390
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARL 132
+ S K+TTP EL E+ CS KPL+ Y + LCF N++Q AHRL L
Sbjct: 391 HPDSNVSKKYTTPDELQEQYVVCSAEEKPLIFYYFFAELKWDKTLCFTNSSQSAHRLTVL 450
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L N+ +KG + +AE+ + L R ++++F++ +I++++ +D LARGID+ +
Sbjct: 451 L----NIWSKG---NLKVAELSAALDRTSRELVLRKFKQSEINVIICTDALARGIDIPDC 503
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ VI+Y+ P NIK Y+HR+GRT R GR G +VT++
Sbjct: 504 NYVISYDPPRNIKTYVHRVGRTGRAGRIGNAVTII 538
>gi|297484677|ref|XP_002694482.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
gi|296478689|tpg|DAA20804.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Bos taurus]
Length = 555
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 18/212 (8%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ G+ P+ + D S
Sbjct: 304 MCCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFST-----GSAHRGPSDPDIDVDEDS 358
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G K+T P L CS KPLV+ LI + VLCF N+ + +HRL L+
Sbjct: 359 GG---KYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQA 415
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V +AE S QR I+++F + KI L++++D +ARGIDV+ + +V
Sbjct: 416 FGGV---------TVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLV 466
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 467 VNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 498
>gi|340711741|ref|XP_003394428.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
terrestris]
Length = 659
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 121/206 (58%), Gaps = 14/206 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL++L LF P LFTSV+ D D FIG++T
Sbjct: 398 QKLLFSATLSQDPEKLNRLGLFHPILFTSVLVTDKDDD-------VNLDKEVGNFIGRYT 450
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL E+ C KP+ LYQLI ++ + VL F N+ AHRL LL +
Sbjct: 451 SPEELKEEAIECEAEYKPVALYQLIIRNGITSKVLVFTNSGGTAHRLTILLQSL------ 504
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L +R I+ +F KI ++V SD LARG+D+ N+ +VI+Y+ P
Sbjct: 505 LSKENIVVGELSAQLVSKEREDILTKFSSGKIQILVCSDALARGVDIPNVQLVISYDLPK 564
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
+I YIHR GRT R G+ GT+++++T
Sbjct: 565 HINGYIHRAGRTGRAGKSGTAISILT 590
>gi|194674602|ref|XP_001787674.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Bos taurus]
Length = 565
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 122/212 (57%), Gaps = 18/212 (8%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ G+ P+ + D S
Sbjct: 314 MCCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFST-----GSAHRGPSDPDIDVDEDS 368
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G K+T P L CS KPLV+ LI + VLCF N+ + +HRL L+
Sbjct: 369 GG---KYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQA 425
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V +AE S QR I+++F + KI L++++D +ARGIDV+ + +V
Sbjct: 426 FGGV---------TVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDAMARGIDVQGVQLV 476
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 477 VNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 508
>gi|427792293|gb|JAA61598.1| Putative atp-dependent rna helicase, partial [Rhipicephalus
pulchellus]
Length = 783
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 121/204 (59%), Gaps = 19/204 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LL+SATL+ DP+KL L LFQPKLFT+ + GD Q + F+GK+T
Sbjct: 525 QKLLYSATLTQDPDKLQSLMLFQPKLFTATAAVSMPGDEQRQKT----------FVGKYT 574
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP LSE N KPL ++ L+ H + LCF + + AHRL+ +L + ++ +
Sbjct: 575 TPQGLSEFYYLTHDNTKPLAVWDLVANHGFRDTLCFTASKEDAHRLSLVLKEMGSIRAEE 634
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K++IA+ R +++++F K+D++V S+ LARG+DV N+ VI Y+ P
Sbjct: 635 FSAKLSIAD---------RARVLRKFASGKLDILVCSNVLARGLDVANVRHVICYDPPKF 685
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
IK Y+HR+GRTAR G GT+VT +
Sbjct: 686 IKTYVHRVGRTARAGVPGTAVTFL 709
>gi|224072122|ref|XP_002196880.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Taeniopygia
guttata]
Length = 707
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 19/204 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DPEKL QL LFQP+LFTSV T+ +E N K+T
Sbjct: 466 QKLLFSATLTQDPEKLQQLDLFQPRLFTSVYSEKNRDGTE---TEQDTTN-------KYT 515
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P LS+ C N KPL+L + K VLCF N+ + +HRL L+ +
Sbjct: 516 LPEGLSQCYVPCDLNSKPLLLLYFMLKMKFTRVLCFTNSREASHRLFLLVQAFGGI---- 571
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+AE S L ++R + ++EF + KI L++++D ARGIDV+ ++ VINY+AP
Sbjct: 572 -----TVAEFSSRLTPNERKRTMKEFEQGKIQLLISTDATARGIDVKRVNYVINYDAPQF 626
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
I+ Y+HR+GRTAR G G + +LV
Sbjct: 627 IRTYVHRVGRTARAGEAGVAFSLV 650
>gi|260801978|ref|XP_002595871.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
gi|229281121|gb|EEN51883.1| hypothetical protein BRAFLDRAFT_84239 [Branchiostoma floridae]
Length = 806
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/208 (43%), Positives = 117/208 (56%), Gaps = 34/208 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS +PEKL QL+LF P+LFTSVV Q T+S AG+ F+GKFT
Sbjct: 544 QKLLFSATLSQNPEKLQQLNLFHPRLFTSVVR--HKQRKQETAS-AGSSEEKGTFVGKFT 600
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TPA L Q VLCF + + HRL L V
Sbjct: 601 TPAGL----------------------QKFQHVLCFTGSLESTHRLYLLAKLFGGV---- 634
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+AE S+L D+R KI+ +FR KI L+V SD +ARG+DVE ++VVI+Y+ P
Sbjct: 635 -----TVAEFSSNLPPDRRTKILTKFRTGKIQLIVCSDAMARGMDVEGVEVVISYDVPPY 689
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K YIHR+GRTAR G++G + +LV E
Sbjct: 690 VKTYIHRVGRTARAGKEGRAFSLVLQEE 717
>gi|118098682|ref|XP_415229.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Gallus gallus]
Length = 764
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 119/210 (56%), Gaps = 18/210 (8%)
Query: 19 YPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
YP P Q+LLFSATL+ DPEKL QL LFQP+LFTSV T + E +
Sbjct: 515 YPQIPLQKLLFSATLTQDPEKLQQLGLFQPRLFTSVYSEKKTLRDGTETKEDCEE----- 569
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
K+T P LS+ C N KPL+L + VLCF N+ + +HRL L+
Sbjct: 570 ---KYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFG 626
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ +AE S L ++R + ++EF + KI L++++D ARGID++ ++ VIN
Sbjct: 627 GI---------TVAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNCVIN 677
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
Y+ P I+ YIHR+GRTAR G+ G + ++V
Sbjct: 678 YDTPQFIRTYIHRVGRTARAGKAGLAFSMV 707
>gi|194214438|ref|XP_001915702.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Equus caballus]
Length = 550
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 126/209 (60%), Gaps = 18/209 (8%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G+ D ++A AD S+G
Sbjct: 302 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAQRGSRD-----ADAEADGESAG- 355
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
K+T PA L+ CS KPLV+ L+ + VLCF N+ + +HRL L
Sbjct: 356 --KYTFPAGLTHHYVPCSLRSKPLVVLHLVLEMNFSRVLCFTNSRENSHRLFLLAQAFGG 413
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D +ARGIDV+ + +V+NY
Sbjct: 414 V---------SVAEFSSRYGPGQRKMILKQFEQGKIQLLISTDAMARGIDVQGVQLVVNY 464
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 465 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 493
>gi|73994975|ref|XP_543351.2| PREDICTED: ATP-dependent RNA helicase DDX51 [Canis lupus
familiaris]
Length = 631
Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 123/212 (58%), Gaps = 20/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
++ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ + G D E+G
Sbjct: 382 ISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFSTGLAGRGPRDID-RDGESG----- 435
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
GK+T P LS CS KPL + LI + VLCF N+ + +HRL L+
Sbjct: 436 ----GKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVLCFTNSRENSHRLFLLVQA 491
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
VA AE S + QR ++++F + KI L++++D +ARGIDV+ + +V
Sbjct: 492 FGGVAA---------AEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLV 542
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+AP ++ Y+HR+GRTAR GR G + TL+
Sbjct: 543 INYDAPQYLRTYVHRVGRTARAGRTGQAFTLL 574
>gi|426247154|ref|XP_004017351.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51
[Ovis aries]
Length = 676
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 20/213 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD-NL 74
+ P P Q+LLFSATL+ +PEKL QL L+QP+LF+ TG S G D +
Sbjct: 425 MCCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFS-------TGSAYRAPSNPGIDVDG 477
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
SG GK+T P L+ CS KPLV+ LI + VLCF N+ + +HRL L+
Sbjct: 478 DSG--GKYTFPVGLTHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQ 535
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
V +AE S QR I+++F + KI L++++D ARGIDV+ + +
Sbjct: 536 AFGGV---------TVAEFSSRYGPGQRKSILKQFEQGKIQLLISTDATARGIDVQGVQL 586
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
V+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 587 VVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 619
>gi|307209142|gb|EFN86284.1| Probable ATP-dependent RNA helicase Dbp73D [Harpegnathos saltator]
Length = 660
Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/206 (38%), Positives = 125/206 (60%), Gaps = 14/206 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL +L LFQP LFT+V+ TG ++ D ++ F G++T
Sbjct: 392 QKLLFSATLSQDPEKLSRLGLFQPILFTTVM---VTG----KDTDVNLDKMTGEFAGRYT 444
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL+E C+ KPL LY L+ +H + L F N+ AHRLA L+ +
Sbjct: 445 SPGELTELAVECAAEYKPLALYHLLTRHDTISKTLVFTNSGDTAHRLALLIRSL------ 498
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L QR ++ +F + ++++SD LARG+D+ + +V++Y+ P
Sbjct: 499 LSERNVTVGELSAQLMPKQRESVLSKFASGETHVLISSDALARGLDIPEVQLVVSYDVPK 558
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
+IK YIHR GRT R G+ GT+V+++T
Sbjct: 559 HIKGYIHRAGRTGRAGKPGTAVSVLT 584
>gi|380018891|ref|XP_003693352.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
Dbp73D-like [Apis florea]
Length = 577
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 122/206 (59%), Gaps = 14/206 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL++L LFQP LFTSV+ + + D FIG++T
Sbjct: 316 QKLLFSATLSQDPEKLNRLGLFQPILFTSVL-------VKDKDDDVNLDKXIGDFIGRYT 368
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQ-GVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL E+ C+T KP LY +I + + L F N+ + HRL LL +
Sbjct: 369 SPKELKEQAIECATEYKPAALYHIIINNDITPKTLIFTNSGETTHRLTILLQSL------ 422
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L +R KI+ +F KI +++ SD LARG+D+ +I +VI+Y+ P
Sbjct: 423 LSEKNIVVGELSAQLVSKEREKILNKFINGKIQILICSDALARGVDIPDIQLVISYDLPK 482
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
+I YIHR GRT R G+ GT+++++T
Sbjct: 483 HINGYIHRAGRTGRAGKSGTAISILT 508
>gi|350416892|ref|XP_003491155.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like [Bombus
impatiens]
Length = 615
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/208 (41%), Positives = 119/208 (57%), Gaps = 18/208 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL++L LF P LFTSV+ D D + FIG++T
Sbjct: 354 QKLLFSATLSQDPEKLNRLGLFHPILFTSVLVTGKDDD-------VNLDKEAVNFIGRYT 406
Query: 84 TPAELSEKLTTCSTNLKPLVLYQL-IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL E+ C KP+ LYQL IR L F N+ AHRL LL +
Sbjct: 407 SPEELKEEAIECEAEYKPVALYQLLIRDGITSKALVFTNSGGTAHRLTILLQSL------ 460
Query: 143 GAGTKMNIA--EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
+K NI E+ + L +R I+ +F I ++V SD LARG+D+ N+ +VI+Y+
Sbjct: 461 --LSKKNIVVGELSAQLVSKEREDILTKFTSGNIQILVCSDALARGVDIPNVQLVISYDL 518
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P +I YIHR GRT R G+ GT+++++T
Sbjct: 519 PKHINGYIHRAGRTGRAGKSGTAISILT 546
>gi|440909766|gb|ELR59643.1| ATP-dependent RNA helicase DDX51, partial [Bos grunniens mutus]
Length = 542
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 121/212 (57%), Gaps = 21/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ G+ P+ + D S
Sbjct: 294 MCCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFST-----GSAHRGPSDPDIDVDEDS 348
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G K+T P L CS KPLV+ LI + VLCF N+ + +HRL +
Sbjct: 349 GG---KYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLVQAFGG 405
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ +AE S QR I+++F + KI L++++D +ARGIDV+ + +V
Sbjct: 406 V------------TVAEFSSRYGPGQRKGILKQFEQGKIQLLISTDAMARGIDVQGVQLV 453
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 454 VNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 485
>gi|449543170|gb|EMD34147.1| hypothetical protein CERSUDRAFT_125827 [Ceriporiopsis subvermispora
B]
Length = 699
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/210 (37%), Positives = 130/210 (61%), Gaps = 10/210 (4%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L+L PK F VV+ ++ S++ D + + + KF+
Sbjct: 448 QKLLFSATLTRDPSKIAALNLHSPKYF--VVQ------SRTDRSDSKEDGVLNIVMEKFS 499
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P+ LSE + C T+ KPL+L+ L+ H++ L F +A+ RL RL + +
Sbjct: 500 MPSTLSENMIVCETSEKPLMLFHLVHAHSVTNALVFTKSAESTARLVRLFEFFEAAQSST 559
Query: 144 A-GTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
A G+ + + YS DL +R I+++F+ +KI ++V SD ++RGID+ ++ V++Y+AP
Sbjct: 560 AQGSARIVVKAYSSDLSPSERKSILEQFKNQKIHILVCSDLISRGIDISHVSHVVSYDAP 619
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++KY+HR+GRTAR GR G++ TLV E
Sbjct: 620 VDMRKYVHRVGRTARAGRFGSAWTLVEEQE 649
>gi|449663831|ref|XP_002165436.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Hydra
magnipapillata]
Length = 734
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 122/205 (59%), Gaps = 18/205 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ +PEKL L L+ P LF S D + T + +N S +F
Sbjct: 419 QKLLFSATLTQNPEKLAPLRLYNPILFIS------KRDNEKTKKDGSTENKSEF---RFI 469
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P +L EK+ LKPLV+ L+ K + +LCF + + HRL LL I G
Sbjct: 470 VPEQLVEKMVIVKEELKPLVIVHLMLKLKYKRILCFTKSIEATHRLHLLLQSI------G 523
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
T +AE S+L QR II++F+ ID +++SD +ARG+D++N+++V+NY++P N
Sbjct: 524 GFT---VAEFSSNLTETQRKGIIRDFKNGSIDALISSDAMARGMDIDNVNMVVNYDSPAN 580
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVT 228
K Y+HR+GRTAR G +G ++T++T
Sbjct: 581 SKTYVHRVGRTARAGNRGEALTILT 605
>gi|348537210|ref|XP_003456088.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oreochromis
niloticus]
Length = 621
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 84/212 (39%), Positives = 118/212 (55%), Gaps = 21/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L+ P P Q+LLFSATL+ +PEKL QL L QP+LF+S G D+ S G D
Sbjct: 376 LSPPQTPLQKLLFSATLTQNPEKLQQLGLHQPRLFSSA---HGQADSTAASPTHGHD--- 429
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+F P L+E C+ + KPL+L I + + +LCF N+ + AHRL LL
Sbjct: 430 -----RFNFPQGLTEYYVPCTMSSKPLLLLHFILRMKLHPILCFTNSRETAHRLHLLLQL 484
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S L R K ++EF + KI L++++D +ARGID+ + V
Sbjct: 485 FGGV---------QAAEFSSQLSPGDRKKTLKEFEQGKIQLLISTDAVARGIDISGVKCV 535
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP I+ YIHR+GRTAR G+ G + T +
Sbjct: 536 VNYDAPQYIRTYIHRVGRTARAGKTGLAFTFL 567
>gi|296213300|ref|XP_002753212.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Callithrix jacchus]
Length = 797
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 118/204 (57%), Gaps = 20/204 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ +PEKL QL L QP+LF+ TG E G D S GK+
Sbjct: 427 QKLLFSATLTQNPEKLQQLGLHQPRLFS-------TGLAHRGPEETGGDRES----GKYA 475
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+ V
Sbjct: 476 FPVGLTHHYVPCSLSSKPLVILHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGV---- 531
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY+AP
Sbjct: 532 -----DVAEFSSRYGPGQRRAILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQY 586
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
++ Y+HR+GRTAR G+ G + TL+
Sbjct: 587 LRTYVHRVGRTARAGKTGQAFTLL 610
>gi|395513523|ref|XP_003760973.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Sarcophilus harrisii]
Length = 668
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 124/211 (58%), Gaps = 19/211 (9%)
Query: 18 TYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P P Q+LLFSATL+ +PEKL +L L+QP+LF++ +E +Q ++ + G +
Sbjct: 421 SQPQMPLQKLLFSATLTRNPEKLQELGLYQPRLFSTGLE------SQESTVQPG---IEQ 471
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
GK+ PA LS CS N KPLV+ L+R VLCF N+ + +HRL L+
Sbjct: 472 DVEGKYAFPAGLSHFYVPCSLNSKPLVILHLMRNLKFSRVLCFTNSREHSHRLFLLVKAF 531
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ +AE S QR I+++F + KI L++++D ARGIDV+ + +VI
Sbjct: 532 GGIP---------VAEFSSRFGPGQRKMILKQFEQGKIQLLISTDATARGIDVKGVKLVI 582
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+AP I+ Y+HR+GRTAR G G + TL+
Sbjct: 583 NYDAPQYIRTYVHRVGRTARAGHTGLAFTLL 613
>gi|170032268|ref|XP_001844004.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
gi|167872120|gb|EDS35503.1| ATP-dependent RNA helicase DDX51 [Culex quinquefasciatus]
Length = 695
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/212 (41%), Positives = 127/212 (59%), Gaps = 8/212 (3%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P +P +LLFSATLS DPEKL+ LF PKLFT+V +PA A+ FI
Sbjct: 355 PRQPHKLLFSATLSQDPEKLNTFKLFHPKLFTAVSDPAKRLAAL-VRHHQQAEEKRGKFI 413
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
G++ TP EL E + +KPL L+ LI+++ + LCF N+ G+HRL+ +L
Sbjct: 414 GQYATPMELRELVCMTQFKIKPLTLFALIKENGYKRFLCFTNSIDGSHRLSFVLQ----- 468
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K GT++ I E S L R ++ F K++ ++ +D LARGID+++IDVVI+Y+
Sbjct: 469 --KMFGTELVIEEWSSSLSPQARKSVLSRFALGKVNGIICTDALARGIDIDDIDVVISYD 526
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +I YIHRIGRT R G +GTS+T++ E
Sbjct: 527 MPRHINTYIHRIGRTGRAGNRGTSITMLIDEE 558
>gi|353239546|emb|CCA71453.1| related to DBP6-ATP-dependent RNA helicase [Piriformospora indica DSM
11827]
Length = 1596
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 131/211 (62%), Gaps = 11/211 (5%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG-ADNLSSGFIGKF 82
Q+LLFSATL+ DP K+ +L L PK F +V+ G +Q E G A +++ + F
Sbjct: 1343 QKLLFSATLTRDPAKIVELQLRDPKYF--IVK--GISASQ----EVGDAMDVNVTHVESF 1394
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI-DNVAT 141
TP L E + C + KPL+L+ L K + +L F +A+ RL RLL + D +A
Sbjct: 1395 ETPGTLREWMIVCESINKPLLLFYLAHKQQISDMLVFTKSAESTTRLLRLLGYFEDAMAE 1454
Query: 142 KGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
+ G+K IAE +S DL QR ++++F+ ++ID+++ SD ++RGID+ ++ V+NY+
Sbjct: 1455 REVGSKKIIAEAFSSDLAPSQRKTVLEKFKAKQIDMLICSDLVSRGIDIPHVSHVVNYDI 1514
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KYIHR+GRTAR GR+G + +LV E
Sbjct: 1515 PVDVRKYIHRVGRTARAGREGDAWSLVEEQE 1545
>gi|241751464|ref|XP_002406051.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215506028|gb|EEC15522.1| DEAD box ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 393
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 110/204 (53%), Gaps = 22/204 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LL+SATL+ DPEKL L LFQPKLFT+ G P A F GK+T
Sbjct: 150 QKLLYSATLTQDPEKLQSLMLFQPKLFTA------AGKRDPAVERAA-------FAGKYT 196
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP LSE KPL L+ L+ G LCF T AHRL ++ + V
Sbjct: 197 TPQGLSEFYRVVQNAKKPLALWDLVANRGYTGTLCFTGTKDDAHRLCLVIKEMGGV---- 252
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ E SDL +R ++++ F +DL+V S+ LARG+DV N+ V+ Y+ P
Sbjct: 253 -----RVEEFSSDLSATERARVLRRFASGGLDLLVCSNVLARGLDVANVRNVVCYDPPKY 307
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
+K Y+HR+GRTAR G GT+VT +
Sbjct: 308 VKTYVHRVGRTARAGVPGTAVTFL 331
>gi|109099284|ref|XP_001105887.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Macaca mulatta]
Length = 664
Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 419 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLARRGLEDTD-----------GDGD 467
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 468 LGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGG 527
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR +I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 528 V---------DVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 578
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR GRTAR G+ G + TL+
Sbjct: 579 DAPQYLRTYVHRAGRTARAGKMGQAFTLL 607
>gi|198425548|ref|XP_002130172.1| PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
[Ciona intestinalis]
Length = 636
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/208 (40%), Positives = 120/208 (57%), Gaps = 12/208 (5%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL QL+LFQP+LF +VV+P + + D + FIGK+
Sbjct: 392 QKLLFSATLSADPEKLQQLNLFQPRLFAAVVKPVQDNNMK-------CDVEENDFIGKYA 444
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP L + + C+ KPL+ L+ VLCF + + +L+ L I A K
Sbjct: 445 TPDGLEQYMIHCTAGEKPLITLNLVLNKT--RVLCFAGSIETTRKLSML---IQMYADKE 499
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ E S L +R K++++F KI+++V SD++ARG+DV ++ VI Y+ P
Sbjct: 500 GKKEFICTEFASHLPSSKRGKVLKDFISGKINVLVCSDSMARGLDVPCVEHVILYDVPPL 559
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK YIHRIGRTAR G GT+ TL+ E
Sbjct: 560 IKTYIHRIGRTARAGATGTAYTLLRKQE 587
>gi|410976432|ref|XP_003994624.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Felis catus]
Length = 538
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/209 (40%), Positives = 121/209 (57%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ G P ++A D SG
Sbjct: 292 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFST-----GLARGGPKDADADGD---SG- 342
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T PA LS CS KPLV+ LI + VLCF N+ + +HRL L+
Sbjct: 343 -GKYTFPAGLSHCYVPCSLRTKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG 401
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V AE S QR ++++F + KI L++++D ARGID++ + +V+NY
Sbjct: 402 VTA---------AEFSSRCGPGQRKAVLKQFEQGKIRLLISTDATARGIDMQGVQLVVNY 452
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR GR G + TL+
Sbjct: 453 DAPQYLRTYVHRVGRTARAGRTGRAFTLL 481
>gi|47682722|gb|AAH69876.1| Ddx51 protein, partial [Mus musculus]
Length = 260
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ DPEKL +L L+QP+LF++ + DT A D S
Sbjct: 14 PQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDT------AEVDENS--- 64
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L
Sbjct: 65 -GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG 123
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY
Sbjct: 124 V---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINY 174
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 175 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 203
>gi|340368286|ref|XP_003382683.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Amphimedon
queenslandica]
Length = 640
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 122/217 (56%), Gaps = 31/217 (14%)
Query: 17 LTYPSRP--QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L YP+ Q+LLFSATLS DPE+LH L L++PKLFT+ PA D
Sbjct: 404 LIYPAAAPLQKLLFSATLSLDPEQLHLLQLYRPKLFTAT--PALQED------------- 448
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+G+ P+ L E +CS++ KPLVL LI +LCF ++ + HRL LL
Sbjct: 449 ----LGQSILPSTLKEYSISCSSDYKPLVLLHLILTFDHHRILCFTHSRESTHRLTLLLK 504
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
D +AE+ DL +++N++I++ ++I +V SD +ARG+D+ ID
Sbjct: 505 EYD----------APVAEISGDLSQEKKNELIKKLTGKEIKALVCSDGMARGMDIPGIDC 554
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P + + Y+HR+GRTAR G +G + TL T E
Sbjct: 555 VINYDVPSHFRSYLHRVGRTARAGAEGAAYTLNTFEE 591
>gi|426374738|ref|XP_004054220.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Gorilla gorilla
gorilla]
Length = 641
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 122/209 (58%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT D S
Sbjct: 396 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-------GDRDS--- 445
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ CS N KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 446 -GKYTFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 504
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 505 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 555
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 556 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 584
>gi|355786666|gb|EHH66849.1| hypothetical protein EGM_03914, partial [Macaca fascicularis]
Length = 494
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 249 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLARRGLEDTD-----------GDGD 297
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 298 LGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSKVLCFTNSRENSHRLFLLVQAFGG 357
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR +I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 358 V---------DVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 408
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR GRTAR G+ G + TL+
Sbjct: 409 DAPQYLRTYVHRAGRTARAGKMGQAFTLL 437
>gi|328790575|ref|XP_001122539.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Apis mellifera]
Length = 600
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 15/209 (7%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL++L LFQP LFTSV+ D E G FIG++T
Sbjct: 340 QKLLFSATLSQDPEKLNRLGLFQPILFTSVL--TDKDDDVNLDKEVG------DFIGRYT 391
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLI-RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL E+ C+T KP LY +I + L F N+ + HRL LL
Sbjct: 392 SPKELKEQAIECATEYKPAALYHIIINNDIIPKTLIFTNSGKTTHRLTILLQSF------ 445
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + E+ + L +R KI+ +F KI +++ SD LARG+D+ ++ +V++Y+ P
Sbjct: 446 LSEKNIIVGELSAQLVSKEREKILNKFINGKIQILICSDALARGVDIPDVQLVVSYDLPK 505
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+I YIHR GRT R G+ GT+++++T+ +
Sbjct: 506 HINGYIHRAGRTGRAGKSGTAISILTSKQ 534
>gi|344299254|ref|XP_003421302.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Loxodonta africana]
Length = 690
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 121/209 (57%), Gaps = 18/209 (8%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL+L QP+LF++ +E G E D+++
Sbjct: 442 PQMPLQKLLFSATLTQNPEKLQQLALHQPRLFSAGLESRGL--------EGTGDDVAGDM 493
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPL + L+ VLCF N+ + +HRL L+
Sbjct: 494 GGKYAFPEGLAHHYVPCSLSTKPLAVLHLVLTMRFSRVLCFTNSRENSHRLFLLVQAFGG 553
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR + +++F + KI L+V++D ARGIDV+ +++V+NY
Sbjct: 554 V---------SVAEFSSRHGPGQRKRTLKKFEQGKIQLLVSTDATARGIDVQGVELVLNY 604
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP + Y+HR+GRTAR GR G + TL+
Sbjct: 605 DAPQYARTYVHRVGRTARAGRAGQAFTLL 633
>gi|403292279|ref|XP_003945289.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Saimiri boliviensis boliviensis]
Length = 553
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF+ TG E D S
Sbjct: 308 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFS-------TGLAHRGPEETDGDRES--- 357
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ PA L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 358 -GKYAFPAGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 416
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 417 V---------DVAEFSSRYGPGQRKAILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 467
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 468 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 496
>gi|345314845|ref|XP_001512662.2| PREDICTED: ATP-dependent RNA helicase DDX51, partial
[Ornithorhynchus anatinus]
Length = 652
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 26/204 (12%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ +PEKL QL L+QP+LF++ TG + E A + GK+T
Sbjct: 426 QKLLFSATLTRNPEKLQQLGLYQPRLFST------TG-----TREGPAGD------GKYT 468
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA LS CS + KP+++ L+ + VLCF N+ + +HRL L+ V
Sbjct: 469 FPAGLSHYYVPCSLSSKPMLVLHLLHQEDFPRVLCFTNSRENSHRLFLLIQAFGGV---- 524
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+AE S QR I+++F + KI L++++D ARGIDVE + +VINY+AP
Sbjct: 525 -----KVAEFSSRFGPGQRKLILKQFEQGKIQLLISTDATARGIDVEGVKLVINYDAPHY 579
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
I+ Y+HR+GRTAR GR G + T +
Sbjct: 580 IRSYVHRVGRTARAGRTGLAYTFL 603
>gi|40538825|ref|NP_081432.2| ATP-dependent RNA helicase DDX51 [Mus musculus]
gi|81892367|sp|Q6P9R1.1|DDX51_MOUSE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|38614333|gb|AAH60646.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ DPEKL +L L+QP+LF++ + DT A D S
Sbjct: 393 PQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDT------AEVDENS--- 443
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L
Sbjct: 444 -GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG 502
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY
Sbjct: 503 V---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINY 553
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 554 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 582
>gi|291412934|ref|XP_002722733.1| PREDICTED: DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Oryctolagus
cuniculus]
Length = 507
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/204 (40%), Positives = 119/204 (58%), Gaps = 19/204 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DPE+L +L L QP+LF+S G+ D + E G G GK+
Sbjct: 266 QKLLFSATLTQDPERLQRLGLHQPRLFSSGQAHGGSRDGE----ERG------GLAGKYD 315
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA L+ C KPLV+ LI + VLCF N+ + +HRL L+ V
Sbjct: 316 FPAGLTHHYVPCRLRSKPLVVLHLILELKFSRVLCFTNSRENSHRLFLLVQAFGGV---- 371
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++AE S QR I++ F++ KI L+V++D ARGIDV+ +++V+NY+AP
Sbjct: 372 -----SVAEFSSRCGPGQRRGILKRFQQGKIQLLVSTDAAARGIDVQGVELVVNYDAPQY 426
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
++ Y+HR+GRTAR GR G + TL+
Sbjct: 427 LRTYVHRVGRTARAGRTGQAFTLL 450
>gi|148688064|gb|EDL20011.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Mus musculus]
Length = 639
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ DPEKL +L L+QP+LF++ + DT A D S
Sbjct: 393 PQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDT------AEVDENS--- 443
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L
Sbjct: 444 -GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG 502
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY
Sbjct: 503 V---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINY 553
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 554 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 582
>gi|355683374|gb|AER97086.1| DEAD box polypeptide 51 [Mustela putorius furo]
Length = 474
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 120/212 (56%), Gaps = 20/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
++ P P Q+LLFSATL+ +PEKL QL L QP LF++ G P S+A D
Sbjct: 227 ISCPQMPLQKLLFSATLTQNPEKLQQLGLHQPWLFST-----GLARRDPGDSDADRD--- 278
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
SG GK+ PA LS CS KPL + LI + VLCF N+ + +HRL L+
Sbjct: 279 SG--GKYAFPAGLSHHYVPCSLRTKPLAILHLILEKNFSRVLCFTNSRENSHRLFLLVQA 336
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S QR ++++F + KI L++++D ARGIDV+ + +V
Sbjct: 337 FGGVTA---------AEFSSRCGPGQRKAVLKQFEQGKIQLLISTDATARGIDVQGVQLV 387
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP ++ Y+HR+GRTAR GR G + TL+
Sbjct: 388 VNYDAPQYLRTYVHRVGRTARAGRTGQAFTLL 419
>gi|74220751|dbj|BAE31347.1| unnamed protein product [Mus musculus]
Length = 639
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 122/209 (58%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ DPEKL +L L+QP+LF++ + DT A D S
Sbjct: 393 PQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRLGQQSPKDT------AEVDENS--- 443
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L
Sbjct: 444 -GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG 502
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY
Sbjct: 503 V---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINY 553
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 554 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 582
>gi|25455599|gb|AAH40185.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 666
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 421 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 469
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 470 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 529
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 530 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 580
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 581 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 609
>gi|119618949|gb|EAW98543.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sapiens]
Length = 291
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 46 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 94
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 95 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 154
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 155 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 205
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 206 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 234
>gi|345492759|ref|XP_001599929.2| PREDICTED: ATP-dependent RNA helicase DDX51-like [Nasonia
vitripennis]
Length = 631
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 123/205 (60%), Gaps = 13/205 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LL SATLS DPEKL +L LF+P LFTS V D + T + D ++
Sbjct: 372 QKLLLSATLSQDPEKLSRLGLFRPILFTSAV-----VDLEKTDKDINLDE-DLNVASRYG 425
Query: 84 TPAELSEKLTTCSTNLKPLVLY-QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+EL+E++ CS KPL LY QL++ ++ L F N+A+ AHRLA LL +
Sbjct: 426 NPSELTERIVECSIQHKPLALYRQLMKDEVIEKTLVFTNSAEAAHRLAILLQSL------ 479
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E+ + L QR + +++F + + ++V+SD LARG+D+ I +V++Y+ P
Sbjct: 480 LKSKDVTVGELSAQLGSKQREETLEKFIQGTLRVLVSSDALARGLDIPEIKLVVSYDLPK 539
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLV 227
++K YIHR GRT RGG GT+++L+
Sbjct: 540 HVKGYIHRAGRTGRGGHPGTAISLL 564
>gi|154759257|ref|NP_778236.2| ATP-dependent RNA helicase DDX51 [Homo sapiens]
gi|229462978|sp|Q8N8A6.3|DDX51_HUMAN RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
Length = 666
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 421 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 469
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 470 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 529
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 530 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 580
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 581 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 609
>gi|397487104|ref|XP_003814650.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Pan paniscus]
Length = 529
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 284 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 332
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 333 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 392
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 393 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 443
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 444 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 472
>gi|21756727|dbj|BAC04942.1| unnamed protein product [Homo sapiens]
gi|326205429|dbj|BAJ84089.1| ATP-dependent RNA helicase DDX51 [Homo sapiens]
Length = 666
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 421 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 469
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 470 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 529
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 530 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 580
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 581 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 609
>gi|301775625|ref|XP_002923233.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Ailuropoda
melanoleuca]
Length = 517
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 20/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
++ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ + G D ++
Sbjct: 268 ISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFSTGLARRGPRDAD--------EDRD 319
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
SG GK+T P LS CS KPL + LI + VLCF N+ + +HRL L+
Sbjct: 320 SG--GKYTFPTGLSHHYVPCSLRTKPLAVLHLILEKNFSRVLCFTNSRENSHRLFLLVQA 377
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S QR ++++F + KI L++++D +ARGIDV+ + V
Sbjct: 378 FGGVTA---------AEFSSRCGPSQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQRV 428
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 429 INYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 460
>gi|281340804|gb|EFB16388.1| hypothetical protein PANDA_012336 [Ailuropoda melanoleuca]
Length = 490
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/212 (38%), Positives = 121/212 (57%), Gaps = 20/212 (9%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
++ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ + G D ++
Sbjct: 246 ISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFSTGLARRGPRDAD--------EDRD 297
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
SG GK+T P LS CS KPL + LI + VLCF N+ + +HRL L+
Sbjct: 298 SG--GKYTFPTGLSHHYVPCSLRTKPLAVLHLILEKNFSRVLCFTNSRENSHRLFLLVQA 355
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S QR ++++F + KI L++++D +ARGIDV+ + V
Sbjct: 356 FGGVTA---------AEFSSRCGPSQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQRV 406
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 407 INYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 438
>gi|410047553|ref|XP_003954509.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Pan troglodytes]
Length = 497
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 252 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 300
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 301 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 360
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 361 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 411
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 412 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 440
>gi|297693495|ref|XP_002824053.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 1 [Pongo
abelii]
Length = 672
Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 427 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLTHRGLEDTD-----------GDGD 475
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
K+ P L+ CS N KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 476 SEKYAFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 535
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 536 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 586
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 587 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 615
>gi|405968018|gb|EKC33126.1| ATP-dependent RNA helicase DDX51 [Crassostrea gigas]
Length = 1179
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 126/220 (57%), Gaps = 37/220 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVV-----------EPAGTGDTQPTSSEAGAD 72
Q+LLFSATLS +PEKL QL+LFQPKLFTSVV E G D Q T +G
Sbjct: 451 QKLLFSATLSQNPEKLQQLNLFQPKLFTSVVDGGSLPRPLESEGEGNKDDQVTDRLSGPG 510
Query: 73 NLSSG-FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
G F+GK+TTP L E KPLV +L F++ Q H L R
Sbjct: 511 GEVKGQFVGKYTTPLGLKEYTVEVEAFEKPLV------------ILHFLHNLQLYH-LIR 557
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
L I N+AE+ + L+ +R+K++++F+ ID+++ SD +ARG+D+++
Sbjct: 558 LFGGI------------NVAEITAKLQASRRSKVLKKFQNGSIDILICSDAMARGMDIDD 605
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ VI+Y+ P IK YIHR+GRTAR G++GT+++L+ E
Sbjct: 606 VQYVISYDPPPYIKTYIHRVGRTARAGKEGTALSLLQKKE 645
>gi|403417594|emb|CCM04294.1| predicted protein [Fibroporia radiculosa]
Length = 707
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 12/214 (5%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L+L PK F VV G T+++ +L S + KFT
Sbjct: 431 QKLLFSATLTRDPSKIVALNLHDPKYF--VVRGRADG----TAADTEEADLMSLVMEKFT 484
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT-- 141
P+ LSE + C + KPL+L+QL+ H + L F +A+ RL RL + +
Sbjct: 485 MPSSLSEHMIVCDSASKPLMLFQLVHGHGVTNALVFTKSAESTTRLMRLFEFFEGAYSGG 544
Query: 142 ---KGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
G+ K + + YS DL +R I+ +F+ ++I +++ SD ++RGID+ ++ V++
Sbjct: 545 PDPSGSIPKSIVTKAYSSDLSPGERKLILDKFKNQEIHILICSDLISRGIDISHVSHVVS 604
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+AP +++KY+HR+GRTAR GR G + TLV E
Sbjct: 605 YDAPIDMRKYVHRVGRTARAGRAGDAWTLVEEQE 638
>gi|297693497|ref|XP_002824054.1| PREDICTED: ATP-dependent RNA helicase DDX51 isoform 2 [Pongo
abelii]
Length = 665
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 80/209 (38%), Positives = 119/209 (56%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 420 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLTHRGLEDTD-----------GDGD 468
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
K+ P L+ CS N KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 469 SEKYAFPVGLTHHYVPCSLNSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 528
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 529 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 579
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 580 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 608
>gi|395332279|gb|EJF64658.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 694
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 119/208 (57%), Gaps = 8/208 (3%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L L QPK + V P T S E G + + KFT
Sbjct: 446 QKLLFSATLTRDPAKIAALGLRQPK-YVVVQSP----KTSAASKEEGVLDF---VMEKFT 497
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA L+E + C +++KPL+L+ L+ + L F +A+ RL RL ++ +
Sbjct: 498 MPATLTEHMVVCESSVKPLMLFHLVHARGVTNALVFTKSAESTARLVRLFEFFESAHSDS 557
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G ++ SDL +R I+++F+ + + L+V SD ++RGID+ ++ V++Y+ P +
Sbjct: 558 QGRRIVARAYSSDLAPGERKSILEQFKSQDVQLLVCSDLISRGIDISHVSHVVSYDVPVD 617
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+KY+HR+GRTAR GR G + TLV E
Sbjct: 618 FRKYVHRVGRTARAGRAGDAWTLVEEQE 645
>gi|354479142|ref|XP_003501772.1| PREDICTED: ATP-dependent RNA helicase DDX51, partial [Cricetulus
griseus]
Length = 552
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 122/210 (58%), Gaps = 20/210 (9%)
Query: 19 YPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+P P Q+LLFSATL+ +PEKL +L L+QP+LF++ + G DT +NL
Sbjct: 305 FPQMPLQKLLFSATLTQNPEKLQRLGLYQPRLFSTRLGHKGPKDTVEVD-----ENL--- 356
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
GK+T P L+ C + KPL++ L+ LCF N+ + +HRL L
Sbjct: 357 --GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLGMNFSRALCFTNSREHSHRLFLLAQAFG 414
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VIN
Sbjct: 415 GV---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVIN 465
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
Y+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 466 YDAPQYLRTYVHRVGRTARAGKTGQAFTLL 495
>gi|383850916|ref|XP_003701020.1| PREDICTED: probable ATP-dependent RNA helicase Dbp73D-like
[Megachile rotundata]
Length = 679
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 125/211 (59%), Gaps = 16/211 (7%)
Query: 21 SRP--QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
S+P Q+LLFSATLS DP+KL L LFQP LFT+V+ D +EAG +
Sbjct: 413 SKPPVQKLLFSATLSQDPKKLSHLRLFQPVLFTTVLVTDNDNDVN-LDTEAG------NY 465
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLI-RKHAMQGVLCFVNTAQGAHRLARLLHHID 137
IG++T P L+E+ C+ KPL LY L+ R + + L F N+ + AHRL LL +
Sbjct: 466 IGRYTGPEGLTERAVECTMEYKPLALYDLLTRNNTIIKTLIFTNSGESAHRLTILLGSLL 525
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V GT + + LK +R ++ +F +I ++++SD LARG+D+ ++ +VI+
Sbjct: 526 AVKNVTVGT------LSAQLKPKERENVLGKFITGEIQILISSDALARGMDIPDVGLVIS 579
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
Y+ P +IK YIHR GRT R G+ G ++++T
Sbjct: 580 YDLPKHIKGYIHRAGRTGRAGKTGIVISILT 610
>gi|402888183|ref|XP_003907453.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Papio anubis]
Length = 656
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 120/209 (57%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G +T G
Sbjct: 411 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLENTD-----------GDGD 459
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 460 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 519
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR +I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 520 V---------DVAEFSSRYGPGQRRRILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 570
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR GRTAR G+ G + TL+
Sbjct: 571 DAPQYLRTYVHRAGRTARAGKTGQAFTLL 599
>gi|344246330|gb|EGW02434.1| ATP-dependent RNA helicase DDX51 [Cricetulus griseus]
Length = 605
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/211 (37%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 18 TYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+P P Q+LLFSATL+ +PEKL +L L+QP+LF++ + G DT +NL
Sbjct: 357 CFPQMPLQKLLFSATLTQNPEKLQRLGLYQPRLFSTRLGHKGPKDTVEVD-----ENL-- 409
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
GK+T P L+ C + KPL++ L+ LCF N+ + +HRL L
Sbjct: 410 ---GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLGMNFSRALCFTNSREHSHRLFLLAQAF 466
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
V ++AE S QR KI+++F + KI L++++D ARGIDV+ +++VI
Sbjct: 467 GGV---------SVAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVI 517
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 518 NYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 548
>gi|302683871|ref|XP_003031616.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
gi|300105309|gb|EFI96713.1| hypothetical protein SCHCODRAFT_55946 [Schizophyllum commune H4-8]
Length = 566
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 124/228 (54%), Gaps = 29/228 (12%)
Query: 20 PSRP----QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
P RP Q+LLFSATL+ DP KL L+L PK F S+A + ++
Sbjct: 314 PERPRSSCQKLLFSATLTQDPGKLAALNLHNPKYFI-------------VRSKAKRETIT 360
Query: 76 SGFIG--------KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAH 127
SG + +F+ P L+E + C KPL + LI H ++ L F +A+
Sbjct: 361 SGILPDVADVVMERFSMPEGLTEHMAVCDPADKPLAFFHLITSHGIRNALVFTKSAESTT 420
Query: 128 RLARLLHHIDNV----ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
RL RL + + G + I+ SDL +R I++ FR+++I ++VASD +
Sbjct: 421 RLVRLFEFFEKARAERSPAGDSRPVTISAYSSDLGGAERRAILERFRKQEIQILVASDLI 480
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+DV ++ V++Y+AP +++KY+HR+GRTAR GR G++ TLV E
Sbjct: 481 SRGLDVSHVSHVVSYDAPVDVRKYVHRVGRTARAGRAGSAWTLVEEQE 528
>gi|417411466|gb|JAA52168.1| Putative atp-dependent rna helicase, partial [Desmodus rotundus]
Length = 535
Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 118/209 (56%), Gaps = 20/209 (9%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L+QP+LF+ TQP G + G
Sbjct: 289 PQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFS----------TQPARGGPGDADADVGS 338
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
K+T P+ LS CS KPLV+ LI + VLCF N+ + AHRL L+
Sbjct: 339 GAKYTFPSGLSHHYVPCSLQAKPLVILHLILHLSFSRVLCFTNSRENAHRLFLLVQAFGG 398
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
VA +AE S R I+++F + KI L++++D ARGIDV + +V+NY
Sbjct: 399 VA---------VAEFSSRYGPGWRKMILKQFEQGKIQLLISTDATARGIDVRGVQLVVNY 449
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 450 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 478
>gi|441630929|ref|XP_004093170.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX51,
partial [Nomascus leucogenys]
Length = 684
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 119/209 (56%), Gaps = 21/209 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 331 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 379
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 380 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 439
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++ + KI L++++D ARGIDV+ +++V+NY
Sbjct: 440 V---------DVAEFSSRYGPXQRRMILKQXEQGKIQLLISTDATARGIDVQGVELVVNY 490
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 491 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 519
>gi|389612037|dbj|BAM19549.1| Dead box protein 73D, partial [Papilio xuthus]
Length = 248
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 111/193 (57%), Gaps = 21/193 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PE L Q LFQPKLF+ V P D I K+TTP EL E C
Sbjct: 1 PELLEQWGLFQPKLFS--VAPISDFD-------------GGSLIKKYTTPDELIENYVVC 45
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
+ KPL+L+ L+ + VLCF N+AQ HRLA LL+ G + +AE+ S
Sbjct: 46 NAEEKPLILFHLLVEKKWDKVLCFTNSAQSVHRLAVLLNEW------GKDQCLKVAELSS 99
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
L R K++++F++ ++++++++D LARGID+ + + V++Y+ P NIK Y+HR+GRT
Sbjct: 100 ALDRASREKVLEKFKQSEVNVIISTDALARGIDIPDCNYVVSYDPPRNIKTYVHRVGRTG 159
Query: 216 RGGRQGTSVTLVT 228
R GR G +VT++
Sbjct: 160 RAGRIGRAVTILN 172
>gi|392594884|gb|EIW84208.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 620
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 121/212 (57%), Gaps = 19/212 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG-KF 82
Q+LLFSATL+ DP KL L L PK F Q G D ++G +F
Sbjct: 377 QKLLFSATLTRDPGKLAALKLRDPKYFV----------VQAKEKLDGND-----YVGEQF 421
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
T PA L E + C + KPL+L+ L++ ++ L F +++ RL RL H
Sbjct: 422 TMPATLKEHMIICEPSQKPLMLFYLLQNRSVDNALIFTKSSESTSRLVRLFEHFATFKQS 481
Query: 143 GAGT---KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
GA + K+ I SDL +R +I+++F+ +++ L+V SD ++RGID+ ++ V++Y+
Sbjct: 482 GAASEDDKLVIQAYSSDLPAGERKRILEKFKAKEVHLLVCSDLVSRGIDISHVAHVVSYD 541
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP +++KY+HR+GRTAR GR+G + TLV E
Sbjct: 542 APVDMRKYVHRVGRTARAGREGHAWTLVEEQE 573
>gi|60416850|emb|CAI59782.1| hypothetical protein [Homo sapiens]
Length = 268
Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 22/210 (10%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 22 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 70
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 71 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 130
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V ++AE S QR I+++F + KI L++++D ARGIDV+ +++V+NY
Sbjct: 131 V---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNY 181
Query: 199 EAPDNIKKYIH-RIGRTARGGRQGTSVTLV 227
+AP ++ Y+H R+GRTAR G+ G + TL+
Sbjct: 182 DAPQYLRTYVHRRVGRTARAGKTGQAFTLL 211
>gi|395840150|ref|XP_003792928.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Otolemur garnettii]
Length = 665
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 117/204 (57%), Gaps = 21/204 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ +PEKL QL L P+LF++ + G D + G GK+
Sbjct: 426 QKLLFSATLTQNPEKLQQLGLHHPRLFSTSLACKGPQDA---DGDVG---------GKYA 473
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L+ CS + KPL++ LI + + VLCF N+ + +HRL L+ V
Sbjct: 474 FPVGLTHHYVPCSLSTKPLLVLHLILEKSFSRVLCFTNSRENSHRLFLLVQAFGGV---- 529
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++AE S QR I+++F + KI L++++D ARGIDV+ +++VINY+AP
Sbjct: 530 -----SVAEFSSRYGPGQRKMILKQFEQGKIQLLISTDATARGIDVQGVELVINYDAPQY 584
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
++ Y+HR+GRTAR G G + TL+
Sbjct: 585 LRTYVHRVGRTARAGNAGQAFTLL 608
>gi|301604620|ref|XP_002931939.1| PREDICTED: ATP-dependent RNA helicase DDX51 [Xenopus (Silurana)
tropicalis]
Length = 660
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 123/209 (58%), Gaps = 18/209 (8%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L+QP+LFTS + GT D SSE ++ +SG
Sbjct: 412 PQTPLQKLLFSATLTQNPEKLKQLGLYQPRLFTS--KQKGTSDD---SSETQMESSTSG- 465
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
F+ P L+ C+ N KPL+L + VLCF N+ +HRL L+
Sbjct: 466 --NFSLPEGLTHYYIPCNLNSKPLILLHFLLSLRFSRVLCFTNSRDASHRLYLLVRSFGG 523
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
++ +AE S L +R K ++EF + K+ L++++D ARGID++ + VINY
Sbjct: 524 IS---------VAEFSSRLSPGERKKTLKEFEQGKVQLLISTDATARGIDIKGVKCVINY 574
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP I+ Y+HR+GRTAR G+ G + T++
Sbjct: 575 DAPQFIRTYVHRVGRTARAGKAGLAFTML 603
>gi|213511024|ref|NP_001133236.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
gi|209147204|gb|ACI32879.1| ATP-dependent RNA helicase DDX51 [Salmo salar]
Length = 678
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 116/212 (54%), Gaps = 25/212 (11%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L+ P P Q+LLFSATL+ +PEKL QL L QP+LF+SV T P S E
Sbjct: 434 LSPPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSSV---HSQSTTNPESQE------- 483
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+F P L+E C+ + KPL++ I + +LCF N+ + HRL L+
Sbjct: 484 -----RFNFPQGLTEYYVPCTLSKKPLLILHFILRLKFSPILCFTNSREATHRLFLLVQL 538
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S L ++R + ++EF + KI L++++D ARGID+ + V
Sbjct: 539 FGGVQA---------AEFSSRLSPNERMRTLKEFEQGKIQLLISTDAAARGIDINGVKCV 589
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP I+ YIHR+GRTAR G+ G + T +
Sbjct: 590 VNYDAPQFIRTYIHRVGRTARAGKSGLAFTFL 621
>gi|351698593|gb|EHB01512.1| ATP-dependent RNA helicase DDX51, partial [Heterocephalus glaber]
Length = 536
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/212 (37%), Positives = 118/212 (55%), Gaps = 24/212 (11%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE---PAGTGDTQPTSSEAGADNLS 75
P P Q+LLFSATL+ +PEKL QL L+QP+LF++ + P G E
Sbjct: 294 PQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFSTRLAHRVPKDEGTEVDRDPE------- 346
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
GK+T PA L+ CS + KPL + L+ LCF N+ + +HRL LL
Sbjct: 347 ----GKYTFPAGLTHHYVPCSLSSKPLAIMHLVVGKNFSRALCFTNSRENSHRLFLLLQA 402
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V ++AE S R K++++F + KI L++++D ARGIDV +++V
Sbjct: 403 FGGV---------SVAEFSSRYGPGHRRKVLKQFEQGKIQLLISTDATARGIDVLGVELV 453
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 454 INYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 485
>gi|348550777|ref|XP_003461207.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX51-like [Cavia porcellus]
Length = 677
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/205 (38%), Positives = 118/205 (57%), Gaps = 21/205 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLF-TSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q+LLFSATL+ +PEKL +L L+ P+LF T + A DT AG D GK+
Sbjct: 436 QKLLFSATLTQNPEKLQRLGLYLPRLFSTRLAHRALEDDT------AGGDPE-----GKY 484
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ L+ CS N KPL + L+ ++ LCF N+ + +HRL L+ V
Sbjct: 485 AFPSGLTHHYVPCSLNAKPLAIIHLVLGMSISRTLCFTNSRENSHRLFLLVQAFGGV--- 541
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
++AE + R KI+++F + KI L++++D ARGIDV +++VINY+AP
Sbjct: 542 ------SVAEFSACYGPGHRRKILKQFEQGKIQLLISTDATARGIDVPGVELVINYDAPQ 595
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLV 227
++ Y+HR+GRTAR GR G + TL+
Sbjct: 596 YLRTYVHRVGRTARAGRMGRAFTLL 620
>gi|432947382|ref|XP_004084018.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Oryzias latipes]
Length = 632
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 115/212 (54%), Gaps = 22/212 (10%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L+ P P Q+LLFSATL+ +PEKL QL L QP+LF+S D E
Sbjct: 378 LSPPQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSSAHSNDPPADATALKPE------- 430
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+F P L+E C+ + KPL++ I + + +LCF N+ + AHRL L+
Sbjct: 431 -----RFDFPQGLTEYYVPCTLSKKPLLILHFILRMKLHPILCFTNSRETAHRLYLLVQL 485
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S L ++R + ++EF + KI L++++D ARGID+ + V
Sbjct: 486 FGGV---------QAAEFSSRLSPNERKRTLKEFDQGKIQLLISTDAAARGIDIPGVKCV 536
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP I+ YIHR+GRTAR G+ G + T +
Sbjct: 537 VNYDAPQFIRMYIHRVGRTARAGKSGLAFTFL 568
>gi|51467974|ref|NP_001003864.1| ATP-dependent RNA helicase DDX51 [Danio rerio]
gi|82200454|sp|Q6DRI7.1|DDX51_DANRE RecName: Full=ATP-dependent RNA helicase DDX51; AltName: Full=DEAD
box protein 51
gi|49619011|gb|AAT68090.1| DEAD/H box 51 RNA helicase [Danio rerio]
Length = 652
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 120/230 (52%), Gaps = 35/230 (15%)
Query: 3 RRGVGGLVIMWDTFLTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE----PA 57
RR V G + L+ P P Q+LLFSATL+ +PEKL L L QP+LF+S PA
Sbjct: 396 RRTVPGPITAAS--LSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSSTHSLTDNPA 453
Query: 58 GTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVL 117
+ DT F P LSE C+ + KPL++ + + L
Sbjct: 454 QSQDT-------------------FHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPAL 494
Query: 118 CFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177
CF N+ +GAHRL L+ V +AE S L +R K +++F + KI L+
Sbjct: 495 CFTNSREGAHRLYLLVKLFGGV---------EVAEFSSKLSPGERQKTLKDFEKGKIPLL 545
Query: 178 VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++D ARGID+ + VINY+AP I+ YIHR+GRTAR G+ G + T +
Sbjct: 546 ISTDAAARGIDINGVKCVINYDAPQYIRTYIHRVGRTARAGKAGLAFTFL 595
>gi|444726438|gb|ELW66972.1| ATP-dependent RNA helicase DDX51 [Tupaia chinensis]
Length = 478
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 124/226 (54%), Gaps = 40/226 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD-NLSSGFIGKF 82
Q+LLFSATL+ +PEKL QL L+QP+LFT TG Q + +AGAD + SSG GK+
Sbjct: 214 QKLLFSATLTQNPEKLQQLGLYQPRLFT-------TGLPQRSPGDAGADVDGSSG--GKY 264
Query: 83 TTPAELSE------------KLTTCSTNL---------KPLVLYQLIRKHAMQGVLCFVN 121
PA LS C TN KPLV L+ + +LCF N
Sbjct: 265 AFPAGLSPLGALALVLRKDFSRIICFTNSRENSHSLSSKPLVALHLVLRKDFSRILCFTN 324
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
+ + +HRL L+ V N AE S L R +++++F + KI L++++D
Sbjct: 325 SRENSHRLFLLVRAFGGV---------NAAEFSSRLGPGCRKRLLKQFEQGKIQLLISTD 375
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
ARGIDV +++V+NY+AP + Y+HR+GRTAR G+ G + TL+
Sbjct: 376 ATARGIDVPGVELVLNYDAPQYPRAYVHRVGRTARAGQTGQAFTLL 421
>gi|392564142|gb|EIW57320.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 682
Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 121/210 (57%), Gaps = 10/210 (4%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L L P+ VV+ G T E D + + KFT
Sbjct: 432 QKLLFSATLTRDPAKIAALGLRAPRYI--VVQ--GRKSAAATKEEGVLDFV----MEKFT 483
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN-VATK 142
PA L+E + C + KPL+L+ ++ + L F +A+ A RL RL + +
Sbjct: 484 MPATLTEHMLVCESAAKPLMLFHMVHARGVTNALVFTKSAESATRLVRLFEFFEGALRAA 543
Query: 143 GAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
A K +A YS DL +R I+++FR ++I++++ SD ++RGID+ ++ V++Y+ P
Sbjct: 544 DASKKPVVARAYSSDLAPGERKAILEQFRNQEINILICSDLVSRGIDISHVSHVVSYDVP 603
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +KY+HR+GRTAR GR+G + TLV E
Sbjct: 604 VDFRKYVHRVGRTARAGREGDAWTLVEEQE 633
>gi|336383556|gb|EGO24705.1| hypothetical protein SERLADRAFT_369949 [Serpula lacrymans var.
lacrymans S7.9]
Length = 651
Score = 139 bits (351), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL DP KL L L K F VV+ A G E G ++ + ++T
Sbjct: 418 QKLLFSATLPRDPGKLAGLQLRDVKYF--VVQKARGG------REEGVLDV---VMERYT 466
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA L E + C+++ KPLVL+ L+++H ++ L F +A+ RL RL + A G
Sbjct: 467 MPATLREHMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEK-AVAG 525
Query: 144 AGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
G +A+ YS DL +R I+++F+ +I ++V SD ++RG+D+ ++ V++Y+ P
Sbjct: 526 EGRLGVVAKAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYDVPV 585
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++KY+HR+GRTAR GR+G + TLV E
Sbjct: 586 DMRKYVHRVGRTARAGREGDAWTLVEEQE 614
>gi|336370797|gb|EGN99137.1| hypothetical protein SERLA73DRAFT_54272 [Serpula lacrymans var.
lacrymans S7.3]
Length = 514
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/209 (37%), Positives = 125/209 (59%), Gaps = 13/209 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL DP KL L L K F VV+ A G E G ++ + ++T
Sbjct: 305 QKLLFSATLPRDPGKLAGLQLRDVKYF--VVQKARGG------REEGVLDV---VMERYT 353
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA L E + C+++ KPLVL+ L+++H ++ L F +A+ RL RL + A G
Sbjct: 354 MPATLREHMIVCASSEKPLVLFDLVQRHKVRNGLVFTKSAESTARLVRLFELFEK-AVAG 412
Query: 144 AGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
G +A+ YS DL +R I+++F+ +I ++V SD ++RG+D+ ++ V++Y+ P
Sbjct: 413 EGRLGVVAKAYSSDLSVGERRGILEKFKAEEIQILVCSDLISRGMDMSHVSHVVSYDVPV 472
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++KY+HR+GRTAR GR+G + TLV E
Sbjct: 473 DMRKYVHRVGRTARAGREGDAWTLVEEQE 501
>gi|409048731|gb|EKM58209.1| hypothetical protein PHACADRAFT_171465 [Phanerochaete carnosa
HHB-10118-sp]
Length = 681
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 124/211 (58%), Gaps = 11/211 (5%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L+L PK F VV+ G+ T E D + + KF
Sbjct: 432 QKLLFSATLTRDPSKIAALNLRDPKYF--VVQ--GSSREIATQQEGVLDLV----MEKFN 483
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID---NVA 140
PA L E + C ++ KPLVL+ L+ H ++ L F +A+ RL +L + +
Sbjct: 484 MPATLLEHMIVCESSQKPLVLFHLVHTHGVKNALVFTKSAESTARLVKLFEFFELSRISS 543
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T+ G+ + ++ SDL R +I+ +F+ ++ ++V SD ++RGID+ ++ V++Y+A
Sbjct: 544 TEQQGSAIVLSAYSSDLAPSARKEILDKFKNQETHILVCSDLISRGIDISHVSHVVSYDA 603
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KY+HR+GRTAR GR G + TL+ E
Sbjct: 604 PVDMRKYVHRVGRTARAGRTGDAWTLIEEQE 634
>gi|161611979|gb|AAI55869.1| LOC100135117 protein [Xenopus (Silurana) tropicalis]
Length = 644
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 120/209 (57%), Gaps = 25/209 (11%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L+QP+LFTS + GT D SSE ++ +SG
Sbjct: 403 PQTPLQKLLFSATLTQNPEKLKQLGLYQPRLFTS--KQKGTSDD---SSETQMESSTSG- 456
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
F+ P L+ C+ N KPL+L + VLCF N+ +HR
Sbjct: 457 --NFSLPEGLTHYYIPCNLNSKPLILLHFLLSLRFSRVLCFTNSRDASHRFG-------- 506
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+++AE S L +R K ++EF + K+ L++++D ARGID++ + VINY
Sbjct: 507 --------GISVAEFSSRLSPGERKKTLKEFEQGKVQLLISTDATARGIDIKGVKCVINY 558
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP I+ Y+HR+GRTAR G+ G + T++
Sbjct: 559 DAPQFIRTYVHRVGRTARAGKAGLAFTML 587
>gi|19075832|ref|NP_588332.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74662371|sp|Q76PD3.1|DBP6_SCHPO RecName: Full=ATP-dependent RNA helicase dbp6
gi|3581903|emb|CAA20842.1| ATP-dependent RNA helicase Dbp6 (predicted) [Schizosaccharomyces
pombe]
Length = 604
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 116/220 (52%), Gaps = 17/220 (7%)
Query: 14 DTFLTY--PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
DT L Y PS Q+L+FSATL+ DP K+ L L P+L + D +A
Sbjct: 341 DTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIV 400
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
F+ P L E + S+ KP++LY LI + +LCFV + + A RL R
Sbjct: 401 ----------FSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHR 449
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL I + + S L D+R KII F ++L+V SD +ARGIDV N
Sbjct: 450 LLELIHESLNQSFSCGL----FTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVAN 505
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P +++ Y+HRIGRTAR GR+G + TLV +HE
Sbjct: 506 TQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHE 545
>gi|410914978|ref|XP_003970964.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Takifugu
rubripes]
Length = 596
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 116/212 (54%), Gaps = 22/212 (10%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L+ P P Q+LLFSATL+ +PEKL QL L QP+LF+S Q + A A
Sbjct: 352 LSPPRMPLQKLLFSATLTQNPEKLQQLDLHQPRLFSS-------NHCQADGTVAAAQKAD 404
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
F P L+E C+ + KPL++ + + + +LCF N+ + AHRL L+
Sbjct: 405 C-----FDFPQGLTEFYVPCTLSRKPLLILHFVLRLKLSPILCFTNSREAAHRLYLLVQL 459
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
V AE S L +R + +++F++ KI L++++D ARGIDV + V
Sbjct: 460 FGGV---------QAAEFSSRLSPAERKQTLKDFQQGKIQLLISTDATARGIDVSGVKCV 510
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+NY+AP ++ YIHR+GRTAR G+ G + T +
Sbjct: 511 VNYDAPQYVRTYIHRVGRTARAGKSGLAFTFL 542
>gi|189217546|ref|NP_001121235.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Xenopus laevis]
gi|169642008|gb|AAI60740.1| LOC100158308 protein [Xenopus laevis]
Length = 678
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 21/206 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE--PAGTGDTQPTSSEAGADNLSSGFIGK 81
Q+LLFSATL+ +PEKL QL L+QP+LF S + P + +TQ + G
Sbjct: 435 QKLLFSATLTQNPEKLKQLGLYQPRLFISKQKGNPNDSSETQ----------MEPSISGN 484
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
F+ P L+ C+ N KPL+L + VLCF N+ +HRL L+ +
Sbjct: 485 FSLPEGLTHYYIPCNLNSKPLILLHFLLSLRFSRVLCFTNSRDASHRLYLLIRSFGGI-- 542
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
++AE S L +R + ++EF + K+ L+V++D ARGID++ + +INY+AP
Sbjct: 543 -------DVAEFSSRLSPGERKRTLKEFEQGKVQLLVSTDATARGIDIKGVKCIINYDAP 595
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
I+ Y+HR+GRTAR G+ G + T++
Sbjct: 596 QFIRTYVHRVGRTARAGKAGLAFTML 621
>gi|409078236|gb|EKM78599.1| hypothetical protein AGABI1DRAFT_74928 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 602
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/221 (33%), Positives = 122/221 (55%), Gaps = 13/221 (5%)
Query: 13 WDTFLT--YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ TFLT + S Q+LLFSATL+ DP K+ L L +PK F Q +S G
Sbjct: 344 YSTFLTEVHESSCQKLLFSATLTRDPGKIASLELREPKYFI----------VQKSSESDG 393
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D++ S + KF+ P+ L L C ++ KPL+ + L+ + L F +++ RL
Sbjct: 394 QDHILSVVMEKFSIPSTLKHMLV-CESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLV 452
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
RL +G + + SDL +R I++ F+ ++I++++ SD ++RGID+
Sbjct: 453 RLFDFFQKWRAVESGKSLVVQAYSSDLSVGERKVILERFKAQEINILICSDLISRGIDIS 512
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ V++Y+ P +++KY+HR+GRTAR GR G + LV E
Sbjct: 513 HVSHVVSYDVPVDMRKYVHRVGRTARAGRSGDAWALVEEQE 553
>gi|426199228|gb|EKV49153.1| hypothetical protein AGABI2DRAFT_201250 [Agaricus bisporus var.
bisporus H97]
Length = 602
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 124/221 (56%), Gaps = 13/221 (5%)
Query: 13 WDTFLT--YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ TFLT + S Q+LLFSATL+ DP K+ L L +PK F +V+ + D G
Sbjct: 344 YPTFLTEVHESSCQKLLFSATLTRDPGKIASLELREPKYF--IVQKSRESD--------G 393
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D + S + KF+ P+ L L C ++ KPL+ + L+ + L F +++ RL
Sbjct: 394 QDRILSVVMEKFSIPSTLKHMLV-CESSQKPLMFFHLVFHLNVTDALVFTKSSESTARLV 452
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
RL T +G + + SDL +R I++ F+ ++I++++ SD ++RGID+
Sbjct: 453 RLFDFFQKWRTAESGKSLVVQAYSSDLSVGERKVILERFKAQEINILICSDLISRGIDIS 512
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ V++Y+ P +++KY+HR+GRTAR GR G + LV E
Sbjct: 513 HVSHVVSYDVPVDMRKYVHRVGRTARAGRSGDAWALVEEQE 553
>gi|393221493|gb|EJD06978.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 496
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/215 (36%), Positives = 122/215 (56%), Gaps = 18/215 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEA-GADNLSSGFIGKF 82
Q+LLFSATL+ DP ++ L L PK F VV+ + D + A G +N F
Sbjct: 240 QKLLFSATLTRDPARIAALGLRDPKYF--VVQATTSIDRDTSGPAALGMEN--------F 289
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P L E T T KPL+L+ L+ + L F +A+ RL +LL + + VA
Sbjct: 290 AMPPSLKEHYITTPTARKPLILFHLLHNRGISNALVFTKSAESTARLVKLLEYFE-VAYL 348
Query: 143 GAGTKMN-----IAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+N +A+ YS DL +R ++++F++++ID++V SD +ARG+D+ ++ V+
Sbjct: 349 ALSDTVNPPKRIVAQAYSSDLPSGERKNVLEKFKKQEIDILVCSDLVARGLDISHVAHVV 408
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+Y+AP +I+KY+HR GRTAR GR G + TLV E
Sbjct: 409 SYDAPVDIRKYVHRAGRTARAGRAGDAWTLVEDQE 443
>gi|405123262|gb|AFR98027.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 718
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 124/216 (57%), Gaps = 18/216 (8%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q+LLFSATL+ DP K+ LSL P+ + +V+ SS A A S G
Sbjct: 469 PSICQKLLFSATLTRDPSKVAALSLHHPQYY--IVQ----------SSSAPALPTSVG-- 514
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHRLARLLHHID 137
+F P+ LSEK+ LKPL L LI + + L F + + A RL +LL +
Sbjct: 515 EQFALPSSLSEKMLILPPALKPLNLIHLIHHPEFNVDRALVFTKSVESAARLVKLLEFFE 574
Query: 138 N--VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ V G G ++ I + +++ + +++ EF KI+L+V SD +ARGID+ ++ V
Sbjct: 575 DAYVLGGGGGKRLVIEQYSGEMRARDKKQLLAEFGEGKINLIVCSDLIARGIDLPSVSHV 634
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++Y+ P +I+KY+HR+GRTAR GRQGT+ TLV E
Sbjct: 635 VSYDIPLDIRKYVHRVGRTARAGRQGTAWTLVEKQE 670
>gi|321253768|ref|XP_003192843.1| ATP-dependent RNA helicase [Cryptococcus gattii WM276]
gi|317459312|gb|ADV21056.1| ATP-dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 702
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 124/219 (56%), Gaps = 24/219 (10%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFT--SVVEPAGTGDTQPTSSEAGADNLSSG 77
PS Q+LLFSATL+ DP K+ LSL P+ + S + PA PTS
Sbjct: 453 PSICQKLLFSATLTRDPSKIAALSLHHPQYYIVQSSIAPA-----LPTS----------- 496
Query: 78 FIG-KFTTPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHRLARLLH 134
+G +F P+ LSEK+ LKPL L L+ + + L F + + A RL +LL
Sbjct: 497 -VGEQFALPSSLSEKMLIVPPALKPLNLIHLVHHSEFNVDRALVFTKSVESAARLVKLLE 555
Query: 135 HIDN--VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
++ V G G ++ + + ++K + +++ EF K++L+V SD +ARGID+ ++
Sbjct: 556 FFEDAYVLGGGGGKRLAVEQYSGEMKARDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSV 615
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V++Y+ P +I+KY+HR+GRTAR GRQGT+ TLV E
Sbjct: 616 SHVVSYDIPLDIRKYVHRVGRTARAGRQGTAWTLVEKQE 654
>gi|299750023|ref|XP_001836493.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
gi|298408706|gb|EAU85306.2| ATP-dependent RNA helicase [Coprinopsis cinerea okayama7#130]
Length = 692
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 117/212 (55%), Gaps = 14/212 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L L P+ Q ++ +N++ + KF
Sbjct: 444 QKLLFSATLTRDPGKIAALDLRDPRYII----------VQSGKDQSVEENVTQVVLEKFA 493
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L E + + + KPL+++ L+ H + L F +A+ RL RL +
Sbjct: 494 VPDTLREHMIVVNPSKKPLIMFHLVYSHQVTNALVFTKSAESTTRLLRLFEFFEEARMAA 553
Query: 144 AGTKMN---IAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G + +A YS D +R I+++F+ +KI +++ SD ++RGID+ +++ V++Y+
Sbjct: 554 GGEDTSSRIVARAYSSDSPPSERKSILEDFKAQKIHILICSDLISRGIDISHVNHVVSYD 613
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP +I+KY+HR+GRTAR GR+G + TLV E
Sbjct: 614 APVDIRKYVHRVGRTARAGREGDAWTLVEEQE 645
>gi|390594629|gb|EIN04039.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 636
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 120/218 (55%), Gaps = 10/218 (4%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA-DNLSSGFIGKF 82
Q+LLFSATL+ DP KL L+L +P+ F E + EAG D + + KF
Sbjct: 370 QKLLFSATLTRDPGKLAALALREPRYFVVAGERKRAQGAEEREEEAGKMDGVVDFVMEKF 429
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQ----GVLCFVNTAQGAHRLARLLH---- 134
+ P L E S KPL L L+ + GVL F +A+ RL + +
Sbjct: 430 SVPETLEEHYLVTSAAQKPLALMYLVHARGVGADSGGVLVFAKSAEAVARLVKFVEFFEE 489
Query: 135 -HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + ++++ SDL +R I++ F+ RKID++V SD +ARG+D+ +++
Sbjct: 490 ARVDALPADTGRRRVSVKAYSSDLAPGERRAILEGFKARKIDMLVCSDLVARGMDISHVE 549
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V++Y+AP +++KY+HR+GRTAR GR+G + +LV E
Sbjct: 550 HVVSYDAPVDVRKYVHRVGRTARAGRKGCAWSLVEEQE 587
>gi|353232410|emb|CCD79765.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 603
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 39/238 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSV----------VEPAGTGDTQPTSSE----- 68
Q++L SATL+HDPE L Q +L+ P LFTS P + + SSE
Sbjct: 284 QKILVSATLTHDPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQE 343
Query: 69 ---------------AGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM 113
++N ++ +G+F P L E L T +++ L L L+R+
Sbjct: 344 KCDENREIPNVISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHK 403
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ +LCF NT A RL LL + KG +K + S L D+R +I+ F +
Sbjct: 404 KRILCFANTVDCAKRLNMLL-----ASFKGIKSKF----LSSHLHPDKRQRILNLFSVGQ 454
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++V +D++ARGID+ +++ V++Y+ P +IK YIHRIGRTAR G++GT+ L++T++
Sbjct: 455 CQILVCTDSMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQ 512
>gi|256075757|ref|XP_002574183.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 837
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 127/238 (53%), Gaps = 39/238 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSV----------VEPAGTGDTQPTSSE----- 68
Q++L SATL+HDPE L Q +L+ P LFTS P + + SSE
Sbjct: 284 QKILVSATLTHDPEPLKQFNLYFPILFTSNRIRHDENHIDAVPHDHKNAENNSSEIKKQE 343
Query: 69 ---------------AGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM 113
++N ++ +G+F P L E L T +++ L L L+R+
Sbjct: 344 KCDENREIPNVISHVKSSENHTTAGVGQFMVPESLEEFLVTAKPDIRVLFLVYLVRQKHK 403
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ +LCF NT A RL LL + KG +K + S L D+R +I+ F +
Sbjct: 404 KRILCFANTVDCAKRLNMLL-----ASFKGIKSKF----LSSHLHPDKRQRILNLFSVGQ 454
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++V +D++ARGID+ +++ V++Y+ P +IK YIHRIGRTAR G++GT+ L++T++
Sbjct: 455 CQILVCTDSMARGIDINDVECVVSYDVPPSIKIYIHRIGRTARAGKKGTAYNLLSTNQ 512
>gi|58264962|ref|XP_569637.1| ATP-dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134109595|ref|XP_776912.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259592|gb|EAL22265.1| hypothetical protein CNBC4030 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57225869|gb|AAW42330.1| ATP-dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 701
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 121/216 (56%), Gaps = 18/216 (8%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q+LLFSATL+ DP K+ LSL P+ + +V+ SS A S G
Sbjct: 452 PSICQKLLFSATLTRDPSKVAALSLHHPQYY--IVQ----------SSSVPALPTSVG-- 497
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHRLARLLHHI- 136
+F P+ LSEK+ LKPL L LI + + L F + + A RL +LL
Sbjct: 498 EQFALPSSLSEKMLILPPALKPLNLIHLIHHSEFNVDRALVFTKSVESAARLVKLLEFFE 557
Query: 137 DNVATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
D G G K + E YS + + + +++ EF K++L+V SD +ARGID+ ++ V
Sbjct: 558 DAYVLGGGGGKRLVVEQYSGETRAKDKKQLLAEFGEGKVNLIVCSDLIARGIDLPSVSHV 617
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++Y+ P +I+KY+HR+GRTAR GRQGT+ TLV E
Sbjct: 618 VSYDIPLDIRKYVHRVGRTARAGRQGTAWTLVEKQE 653
>gi|402224982|gb|EJU05044.1| DEAD-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 540
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 115/219 (52%), Gaps = 24/219 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSAT++ DP L L L PK F P G D E F+
Sbjct: 287 QKLLFSATMTRDPGVLKSLGLRNPKYFIVTAAPEGERDEAIIREE-------------FS 333
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV---- 139
P LSE L T+LKPL L+ L+ H + L F + + RL +L ++
Sbjct: 334 VPDTLSEYLLVVPTDLKPLYLFHLLHTHPITNALVFTKSTESTTRLLKLFEFFESARLSV 393
Query: 140 ------ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
+ + G+ +A +S +L +R I+ +F++ +I ++VASD ++RGID+ ++
Sbjct: 394 STSVSASAQDGGSPQILARAFSSELGKGERKSILDQFKQGRIRVLVASDLVSRGIDIPDV 453
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V+NY++P +++KY+HR GRTAR GR+G +LV + E
Sbjct: 454 SHVVNYDSPLDMRKYVHRAGRTARAGREGEVWSLVESQE 492
>gi|213407706|ref|XP_002174624.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
gi|212002671|gb|EEB08331.1| ATP-dependent RNA helicase dbp6 [Schizosaccharomyces japonicus
yFS275]
Length = 570
Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 113/208 (54%), Gaps = 16/208 (7%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ +P K+ L L +P+L V +P+ S E D + F+
Sbjct: 325 QKLVFSATLTRNPAKISALRLVRPRLLV-VQDPS-------VSMEPDGDEEDTVL---FS 373
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
PA L E + KPL+LY L+R +Q LCF + + A RL RLL +D KG
Sbjct: 374 LPAALQEHHVGVTAE-KPLLLYHLLRTQQLQNTLCFTKSNESAARLYRLLELLD----KG 428
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + + L R +I+ +F + L+V SD +ARG+D+ + + VINY+ P
Sbjct: 429 SSEPLRVGLFAGILTRADRRRILTQFAESNLQLLVCSDLMARGVDLPSTENVINYDPPSG 488
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++Y+HRIGR AR GR+G + TLV HE
Sbjct: 489 TRQYVHRIGRCARAGREGHAWTLVQDHE 516
>gi|328863604|gb|EGG12703.1| hypothetical protein MELLADRAFT_101203 [Melampsora larici-populina
98AG31]
Length = 892
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/227 (38%), Positives = 116/227 (51%), Gaps = 32/227 (14%)
Query: 21 SRPQR-LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
+RP R LLFSATL DP KL L L P LF V P S DN S
Sbjct: 626 TRPFRILLFSATLKRDPTKLTHLGLRNP-LFIKVQNP----------SVEVIDNFSG--- 671
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P L + L + LKPL L+ LI+ ++ L F + +GA RL L +
Sbjct: 672 --YSLPPNLQQHLIVTTPQLKPLTLFHLIKVREVKNALIFCKSVEGATRLVNLYQLMRKG 729
Query: 140 ATKGAGTKMNIAEV---------------YSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
+ + T+ N E+ SDLK R +I+ EF+ I+L+V SD +A
Sbjct: 730 WMEKSTTEANENEIKDGENSNVLGTAALFSSDLKPIDRKRILNEFQNGSINLLVCSDVIA 789
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
RG+D+ I+ VINY+ P NIKKYIHRIGRTAR G+ G + +LV E
Sbjct: 790 RGLDLPTIENVINYDTPVNIKKYIHRIGRTARAGKFGQAWSLVEFQE 836
>gi|170098937|ref|XP_001880687.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644212|gb|EDR08462.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 510
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 115/213 (53%), Gaps = 21/213 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L+L PK F ++ D + ++
Sbjct: 303 QKLLFSATLTRDPAKIAALNLRDPKYFIV---------------QSRTDGEELHVLENYS 347
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L+ + + S+ KPLV + LI + M+ VL F +A RL RL + +
Sbjct: 348 MPPTLTHMIVSNSSK-KPLVFFHLIHRQKMRNVLVFTKSADSTTRLVRLFEFFEEARLEK 406
Query: 144 ----AGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
AG + IA YS DL +R I+ +F+ ++I +++ SD ++RGID+ ++ V+NY
Sbjct: 407 EPGTAGEESIIARAYSSDLPPSERKAILDQFKAQQIHILICSDLISRGIDITHVSHVVNY 466
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P +++KY+HR+GRTAR GR G + TLV E
Sbjct: 467 DVPVDMRKYVHRVGRTARAGRAGDAWTLVEEQE 499
>gi|358055147|dbj|GAA98916.1| hypothetical protein E5Q_05604 [Mixia osmundae IAM 14324]
Length = 2128
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 118/212 (55%), Gaps = 17/212 (8%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q++L SATLS DP ++ L+L P +F +V E D Q D L + F
Sbjct: 542 QQILCSATLSRDPRQVSALNLRNP-VFVAVRE---ARDDQ-------MDELETE--DNFA 588
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID-NVATK 142
PA L E + S+ KPL+L+ L+ ++ VLCF + + A RLA+L+ + A++
Sbjct: 589 LPATLKEHMLVTSSGSKPLMLFYLLHAKSLSNVLCFTKSVESAQRLAKLVELFETEYASR 648
Query: 143 GAGTK---MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G + E L QR KI+ F +ID+++ SD +ARGID+ ++ VI+Y+
Sbjct: 649 SEGADNQGFKVKEFSGSLPVPQRKKILAAFVAGEIDMLICSDIIARGIDLPSVAHVISYD 708
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KY+HR+GRTAR GR G + +LV + E
Sbjct: 709 VPVDMRKYVHRVGRTARAGRPGDAWSLVESQE 740
>gi|1749726|dbj|BAA13920.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 490
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 112/220 (50%), Gaps = 17/220 (7%)
Query: 14 DTFLTY--PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
DT L Y PS Q+L+FSATL+ DP K+ L L P+L + D +A
Sbjct: 227 DTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIV 286
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
+ P L E + S+ KP++LY LI + +LCFV + + A RL R
Sbjct: 287 ----------LSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHR 335
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL I + + S L D+R KII F ++L+V SD +ARGI N
Sbjct: 336 LLELIHESLNQSFSCGL----FTSSLSRDERKKIISWFATGDLNLLVCSDLMARGIHFSN 391
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P +++ Y+HRIG TAR GR+G + TLV +HE
Sbjct: 392 TQNVINYDPPFSVRSYVHRIGPTARAGREGFAWTLVQSHE 431
>gi|167536143|ref|XP_001749744.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771892|gb|EDQ85553.1| predicted protein [Monosiga brevicollis MX1]
Length = 2519
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 112/207 (54%), Gaps = 27/207 (13%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
+R Q+LLFSATL+ DPEKL L L P + + S A D+ + G
Sbjct: 376 TRLQQLLFSATLTRDPEKLEPLRLAFPTMVIA--------------SSAHQDDAN----G 417
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K T P + E +C+ +PLVL L+ MQ VL FV+ A R+ LL + D
Sbjct: 418 KSTIPRSIDEYTVSCTATERPLVLLSLLIGFQMQRVLIFVSALNTAKRVTALLQYFD--- 474
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++++AEV S + + +++F ++ ++V SDN+ARGID++N++ VI+Y+A
Sbjct: 475 ------ELSVAEVSSSQSQQENTRALKQFAAGELSVLVCSDNMARGIDIKNVETVISYDA 528
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P K YIHR+GR R G G + TLV
Sbjct: 529 PAFPKTYIHRVGRVGRAGAHGEAYTLV 555
>gi|388582635|gb|EIM22939.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 675
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 30/214 (14%)
Query: 22 RPQR----LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
RPQR +LFSATL+ DP K+ L L +PK + +
Sbjct: 440 RPQRGVQKMLFSATLTTDPSKIRSLHLNEPKFVI----------------------VRNN 477
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ + P L E++ T KPL+L L+ + ++ LCF + + A RL LL
Sbjct: 478 KVEDYAIPTTLEERMIVSETAYKPLMLLHLLHQRGVRRALCFTKSVESATRLMHLLR--- 534
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ + G +A SDL +R K++ +FR ++D+++++D +ARGID++ I+ VIN
Sbjct: 535 -LFKEEVGNGPTVASFSSDLSPQERQKMLTKFRDGEVDMLISTDVIARGIDIQGIENVIN 593
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ P ++ KY+HR+GRTAR G G + TLV E
Sbjct: 594 YDIPLDMPKYVHRVGRTARAGLVGKAWTLVEVQE 627
>gi|328768512|gb|EGF78558.1| hypothetical protein BATDEDRAFT_35707 [Batrachochytrium
dendrobatidis JAM81]
Length = 761
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 78/212 (36%), Positives = 114/212 (53%), Gaps = 4/212 (1%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD--NLSSGFIGK 81
Q+LLFSATL+ +P K+ L L P+ T P G D + + N++S +
Sbjct: 377 QKLLFSATLTRNPSKIASLRLRNPRYITVSGSPDGLLDQDVNNVDMNDQPANITSSVEQR 436
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
F TP L E++ S + KPL L GVL FV + + AHRL+ LL+ +
Sbjct: 437 FITPPSLVERMVVLSESDKPLALLYFFDTLKHSGVLVFVKSVESAHRLSLLLNLSLKLHH 496
Query: 142 KGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV-ENIDVVINYE 199
A + E +S DL +R K+I F+ +I ++ SD +ARG+D+ E++ VVINY
Sbjct: 497 GKASNDQPLTEAFSSDLSVSKRQKLISMFKAGQILGLICSDIMARGMDLGESVKVVINYS 556
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P IK Y+HRIGRTAR GR G + T + + +
Sbjct: 557 VPSRIKSYVHRIGRTARAGRDGIAYTFLESRQ 588
>gi|358255930|dbj|GAA57535.1| ATP-dependent RNA helicase DDX51/DBP6, partial [Clonorchis sinensis]
Length = 1092
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 54/249 (21%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTS-------------------VVEPAGTGDTQP 64
Q++L SATL+HDPE L + +L+ P LF S VEP D +P
Sbjct: 777 QKILASATLTHDPEPLKRFNLYFPHLFASSTSAQPRNSNGPIVCDIGHAVEP----DLEP 832
Query: 65 TS------------SEAGADNLS----------SGFIGKFTTPAELSEKLTTCSTNLKPL 102
SE A N S +G +G F+TP L E + + L
Sbjct: 833 PMKKKKKQKKKIALSEGMAHNASHTDCSETVQDAGGVGVFSTPPGLKEYVVAVQPEHRAL 892
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
L LIR ++ VLCF N+ A RL LL + + + + + D+R
Sbjct: 893 FLIHLIRHENVKRVLCFTNSRTTAARLHMLLSNFKGIRSY---------RISGHMPPDKR 943
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+++ F R ++D++V +D++ARG+DV+ ++ V++YE P N+K Y+HR+GRTAR G+ G
Sbjct: 944 QRVLSAFTRNELDVLVCTDSMARGMDVKEVNCVVSYEMPPNVKIYVHRVGRTARAGQPGL 1003
Query: 223 SVTLVTTHE 231
+ TL+ ++
Sbjct: 1004 AYTLLNKNQ 1012
>gi|402591870|gb|EJW85799.1| DEAD/DEAH box helicase [Wuchereria bancrofti]
Length = 527
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 116/209 (55%), Gaps = 22/209 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q++L SATLS D E LH+ L P LF +V E + +S
Sbjct: 271 QKILLSATLSLDVEDLHEWRLRHPCLFKAVKEDIVVTNELSLNS--------------VI 316
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR-KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P L + C T KPLV ++ I + + + +L FVN+ ++RLA LL +
Sbjct: 317 IPTSLKIECIICDTKFKPLVTHERIEGRKSWKKILIFVNSKIASYRLAVLLKML------ 370
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ K + E+ S+L ++R K++ FR+ ++++SD L+RGIDV++IDVVINY+ P
Sbjct: 371 -SIGKYQVEELSSNLFGNRRQKVLARFRKGTTRVLISSDVLSRGIDVKDIDVVINYDRPL 429
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N K ++HR+GRTAR G++G ++ L+T E
Sbjct: 430 NEKLFVHRVGRTARCGKKGRAIFLITAKE 458
>gi|389750259|gb|EIM91430.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 725
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 26/221 (11%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL DP K+ L L K +A + + + +F+
Sbjct: 500 QKLLFSATLMSDPGKIKALELRDAKYIV-------------VQGQANGEGVLGVVMERFS 546
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID------ 137
PA L+E + ++ KPL+L+ L+ H ++ L F +A+ RL RL +
Sbjct: 547 MPATLTEHMLVVPSSQKPLMLFHLVHAHNVKNALVFTKSAESTGRLVRLFQFFERARIQA 606
Query: 138 ------NVATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+V G + + + YS DL +R ++++ R +D++V SD ++RGID+
Sbjct: 607 QSQSSMDVDRSGQDAREVVVKAYSSDLGAAERRGLLEKLRDGTVDILVCSDLVSRGIDIS 666
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ V++Y+AP +I+KY+HR+GRTAR GR G + TLV E
Sbjct: 667 IVQHVVSYDAPVDIRKYVHRVGRTARAGRDGDAWTLVEEQE 707
>gi|170579262|ref|XP_001894751.1| DEAD/DEAH box helicase family protein [Brugia malayi]
gi|158598525|gb|EDP36400.1| DEAD/DEAH box helicase family protein [Brugia malayi]
Length = 527
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 115/209 (55%), Gaps = 22/209 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q++L SATLS D E LH+ L P LF +V E + +S
Sbjct: 271 QKILLSATLSLDVEDLHEWRLRHPCLFKAVKEDVVVTNELSLNS--------------VI 316
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR-KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P L + C T KPLV ++ I + + + +L FVN+ ++RLA LL +
Sbjct: 317 IPNSLKIEYIVCDTKFKPLVTHERIEGRKSWKKILIFVNSKLASYRLAVLLKML------ 370
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ K + E+ S+L ++R K++ FR+ ++++SD L+RGIDV +IDVVINY+ P
Sbjct: 371 -SVGKYQVEELSSNLFGNRRQKVLARFRKGTTRVLISSDVLSRGIDVMDIDVVINYDRPL 429
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N K ++HR+GRTAR G++G ++ L+T E
Sbjct: 430 NEKLFVHRVGRTARCGKKGRAIFLITAKE 458
>gi|348688141|gb|EGZ27955.1| hypothetical protein PHYSODRAFT_258291 [Phytophthora sojae]
Length = 550
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 108/209 (51%), Gaps = 13/209 (6%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFT------SVVEPAGTGDTQPTSSEAGADNLSSGF 78
R+L SATL+ +P KL + + +L + + A G + + +SG
Sbjct: 249 RVLLSATLTRNPRKLAAIGMSNAELTKIGRIDDPLADNAKQGTAGDSDDDDEDGEEASGS 308
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++TP L E C T KPLVL +L+ + A + F + HRLARLL
Sbjct: 309 AKMYSTPTNLEEYWIECDTGSKPLVLLELLSEFAGALSIVFTASVNSTHRLARLLQLYST 368
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ I E S L QR+ ++ +F+ +++ VV SD +ARG+D+E++ V+NY
Sbjct: 369 HPER-------IREFSSSLSQKQRSALVADFKAGRVETVVCSDAMARGMDIEDVANVVNY 421
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P IK YIHR+GRTAR GR G VTLV
Sbjct: 422 DVPSFIKTYIHRVGRTARAGRHGRCVTLV 450
>gi|298709167|emb|CBJ31111.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 839
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/262 (32%), Positives = 130/262 (49%), Gaps = 45/262 (17%)
Query: 8 GLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVV----------EPA 57
G I T T P R +LLFSATL+++P+KL L + P ++T+ E +
Sbjct: 508 GERIRGATVSTPPLR--KLLFSATLTNNPQKLAGLDVVNPLIYTATEFSTAAGGQRRETS 565
Query: 58 GT-GDTQPT--SSEAGADNLSSGFIG--KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHA 112
G GD +P+ + + D + + G +F+TPA L E T C + KPLVL L+R+
Sbjct: 566 GADGDPRPSQETRRSNLDGIGTAVEGGGRFSTPATLEETYTVCDSQAKPLVLLSLLREMV 625
Query: 113 MQGV---LCFVNTAQGAHRLARLLH----------------------HIDNVA---TKGA 144
+ + F ++ HRL RLL H+ + A
Sbjct: 626 GRQADLSVVFTSSVDSTHRLFRLLQLFGGFERTAGTDAEGGGGDGDTHLPDDAIHGDGND 685
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
+AE S L QR+ II+ R + ++V SD +ARG+D++ + +V+NY+ P
Sbjct: 686 DGDGGVAEFSSSLGQRQRSSIIRRARAGAVRVIVCSDGMARGMDLDGVGLVVNYDVPSQA 745
Query: 205 KKYIHRIGRTARGGRQGTSVTL 226
K Y+HR+GRTAR G +GT+VT+
Sbjct: 746 KTYVHRVGRTARAGSRGTAVTI 767
>gi|392573109|gb|EIW66250.1| hypothetical protein TREMEDRAFT_35235, partial [Tremella
mesenterica DSM 1558]
Length = 694
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 119/211 (56%), Gaps = 22/211 (10%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ LSL P+ + +++ + QP++ G +F
Sbjct: 450 QKLLFSATLTRDPAKVASLSLNSPRYY--IIQ---SSLAQPSAHSIGE---------QFA 495
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA L+E + LKPL L LI ++A+ L F + + RL +LL + + VA
Sbjct: 496 IPASLTEFMLILPPQLKPLNLIHLIHSPEYAVSSALIFTKSVESCVRLVKLLEYFE-VAF 554
Query: 142 KGAGTKMNIAEVY-SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G + + Y SD++ +R K++ F + + L+V SD +ARG+D+ + VI+Y+
Sbjct: 555 GGG----KVVQGYTSDMRPAERKKLLAAFGQGDVQLLVCSDLIARGMDLPTVSHVISYDI 610
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KY+HR+GRTAR GR GT+ TLV E
Sbjct: 611 PLDMRKYVHRVGRTARAGRSGTAWTLVEKQE 641
>gi|301117032|ref|XP_002906244.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107593|gb|EEY65645.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 564
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 109/209 (52%), Gaps = 13/209 (6%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFT------SVVEPAGTGDTQPTSSEAGADNLSSGF 78
R+L SATL+ +P KL + + +L + + A G+ + E + ++G
Sbjct: 251 RVLLSATLTRNPRKLAAIGMSNAELTKIGRIDDPLADNAKLGNAGDSDDEDEDGDEATGS 310
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++TP L E C T KPLVL +L+ + A + F + HRLARLL
Sbjct: 311 KKMYSTPTNLDEYWIECDTGSKPLVLLELLSEFAGSLSIVFTASVNSTHRLARLLQLYST 370
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ I E S L QR+ ++ + + +++ VV SD +ARG+D+E++ V+NY
Sbjct: 371 HPER-------IREFSSSLSQKQRSSLVADCKAGRVETVVCSDAMARGMDIEDVANVVNY 423
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P IK YIHR+GRTAR GR G VTLV
Sbjct: 424 DVPSFIKTYIHRVGRTARAGRHGRCVTLV 452
>gi|324510572|gb|ADY44421.1| ATP-dependent RNA helicase [Ascaris suum]
Length = 560
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 117/209 (55%), Gaps = 14/209 (6%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q++L SATLS D EKLH L P+LF + E + + + S A D + G
Sbjct: 293 QKILVSATLSRDVEKLHTWKLRYPRLFKASAE--YSEEVKNAMSIADVDQIE----GAAL 346
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR-KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ LS + C +KPL LY ++ K + +L F N + RLA LL +
Sbjct: 347 LPSSLSHHVVICELRMKPLALYVEVQDKPQWKRILVFANNKLASRRLAILLKVL------ 400
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E+ S+L +R K++ F++ ++++SD L+RGIDV+++DVVINY+ P
Sbjct: 401 -SADVYRVEELSSNLFGRRRQKVLNRFKKGSTRVLISSDVLSRGIDVQDVDVVINYDKPI 459
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + +IHR+ RTAR G+ GT+++L T+ E
Sbjct: 460 SERLFIHRVVRTARCGKPGTAISLTTSGE 488
>gi|330793373|ref|XP_003284759.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
gi|325085359|gb|EGC38768.1| hypothetical protein DICPUDRAFT_148567 [Dictyostelium purpureum]
Length = 565
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 114/225 (50%), Gaps = 35/225 (15%)
Query: 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ W F + +LL SAT++++P K+ L L P FT T T+
Sbjct: 237 LCWSEF-----KLVKLLLSATMTYNPSKISLLQLNAPLFFT-------TSKTKEI----- 279
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVL----YQLIRKHAMQGVLCFVNTAQGA 126
K+T P+ L E + + KPLVL Y+ ++ + + ++CF +
Sbjct: 280 ----------KYTMPSTLKESYIITNPDQKPLVLLNIIYETLKNDSNKKIICFTKSVDIT 329
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
HRL LL I +V K E S L +R+ ++ F+ +I++++ SD ++RG
Sbjct: 330 HRLNSLLKLIGSVD----NIKFTCEEYSSALSTTERSSLLNRFKSNEINVLICSDIMSRG 385
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+ +IDVVINY +P NI Y+HR+GRTAR G+ G S T++ E
Sbjct: 386 MDISDIDVVINYNSPPNITLYVHRVGRTARAGKHGFSYTIIDKQE 430
>gi|388851453|emb|CCF54855.1| related to DBP6-ATP-dependent RNA helicase [Ustilago hordei]
Length = 869
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 128/242 (52%), Gaps = 25/242 (10%)
Query: 5 GVGGLVIMWDTFL--TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
G+GG W T PS Q+LLFSATL+ DP K+ L L P T V + GD
Sbjct: 572 GLGGAA--WSTLQEEAVPSV-QKLLFSATLTSDPAKIAALGLRNPHYIT-VQDSHSAGD- 626
Query: 63 QPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPL-VLYQLIRKHAMQ------- 114
E G N S +F+ P L E + ++ KP +LY L R ++
Sbjct: 627 ----EEDGRSNGSQQH-ERFSLPHSLHEHMLVTTSADKPFHLLYLLHRPDDVEQNSSRIR 681
Query: 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGA----GTKMNIAEVYS-DLKFDQRNKIIQEF 169
LCF + A RL +L+ + V ++ G++ + + YS +LK +R +I+ +F
Sbjct: 682 KALCFTKSVDSAARLVKLIEIFEQVRSESGLIQRGSRPFVVKNYSSELKPSERQRILTQF 741
Query: 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
+ +IDL+V SD ++RGID+ ++ V++Y+AP + KY+HR+GRTAR G+ G + TLV
Sbjct: 742 GQGEIDLLVCSDLISRGIDLPTVEHVVSYDAPIDPAKYVHRVGRTARAGKHGDAWTLVEE 801
Query: 230 HE 231
E
Sbjct: 802 QE 803
>gi|452825309|gb|EME32306.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 568
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 11/213 (5%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
++LLFSAT + KL LSL P LFT + A SS K+
Sbjct: 250 RKLLFSATQTSSIAKLANLSLVNPTLFTYKQDDAVRSILLGNSSSEKRSK------QKYW 303
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-----AMQGVLCFVNTAQGAHRLARLLHHIDN 138
P L E + C + ++ LV KH + GV+ F ++ AHRL R L +
Sbjct: 304 LPFALEEFVLLCKSPVEKLVSLVWYLKHLDSSLSEAGVIVFASSKISAHRLFRFLSLYFS 363
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ T ++IAE+ S+L QR ++++F K+ +VV+SD RG+D+ENI VI++
Sbjct: 364 AGYIESNTAIHIAELSSNLSNRQRRNVVRDFSLHKLQVVVSSDVATRGMDIENIGHVISF 423
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P ++K Y+HR+GRTAR G +GT T++ H+
Sbjct: 424 DVPVHVKTYLHRVGRTARAGHKGTGCTILMEHQ 456
>gi|268575342|ref|XP_002642650.1| Hypothetical protein CBG00032 [Caenorhabditis briggsae]
Length = 640
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 16/204 (7%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
PQ+++ SATLS D E+LH +LF+PKLF++ A + +S D++S G+
Sbjct: 364 PQKIVLSATLSKDVEELHLWNLFKPKLFSATATKA-----KDITSTVPMDHIS----GRL 414
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ +S +L + PL +YQ I+++ L FVN ++RLA +L +
Sbjct: 415 ALPSSISHRLIVSDSKFHPLAVYQQIQRNKFNRTLIFVNEVSSSNRLAHVLKEL------ 468
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + + L +R K++++F + +++ SD LARG D+ +D VINY P
Sbjct: 469 -SQGEFEVDYFTAQLFGKRRYKMLEKFNKNPNRVLICSDVLARGTDLNRVDCVINYNLPA 527
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ K ++HR GRT R G++G +++
Sbjct: 528 DDKLFVHRAGRTGRAGQEGYVISV 551
>gi|384494370|gb|EIE84861.1| hypothetical protein RO3G_09571 [Rhizopus delemar RA 99-880]
Length = 483
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 113/208 (54%), Gaps = 22/208 (10%)
Query: 15 TFLTYPSRP--QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD 72
T L P P Q+LLFSATL+ +P K+ L L +P+ + E +
Sbjct: 270 TDLDIPKAPFIQKLLFSATLTKNPAKIAGLHLNEPEYISVQHEDEDHAQRE--------- 320
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARL 132
+TTP L E + ST KPL + L+ + ++ LCF + + RL L
Sbjct: 321 ---------YTTPEGLKEYMIIVSTEKKPLTVIYLLHQLGVKSGLCFTKSVESTERLQTL 371
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
++ + A + ++ + E S+L+ +R ++++F+ +IDL++ SD + RGID++++
Sbjct: 372 INAYE--ALQPEEKRIKVKEYSSELRPTERKAVLKQFKDGEIDLLICSDLIGRGIDLDSV 429
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQ 220
+ V++Y+AP + KYIHR+GRTAR GR+
Sbjct: 430 EYVVSYDAPAYMDKYIHRVGRTARAGRE 457
>gi|413939310|gb|AFW73861.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
1 [Zea mays]
gi|413939311|gb|AFW73862.1| putative DEAD-box ATP-dependent RNA helicase family protein isoform
2 [Zea mays]
Length = 523
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
YP R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 270 CYP-RLAKIVLSATLTQDPSKLSQLELHHPLL------------------------LNSG 304
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ L F ++ + +HRL+ LL +
Sbjct: 305 -KKRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLRFFE 363
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N+ K + YS L+ + R K ++ F+ KID+++ +D +ARGI ++ + VI
Sbjct: 364 NLPFKFSE--------YSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHIDGLRYVI 415
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 416 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 450
>gi|357137417|ref|XP_003570297.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Brachypodium
distachyon]
Length = 522
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/213 (33%), Positives = 109/213 (51%), Gaps = 33/213 (15%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 273 YP-RLAKIVCSATLTQDPSKLSQLELHHPLL------------------------LNSG- 306
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L C+TNLKPL L L+++ + L F ++ + +HRL+ LL ++
Sbjct: 307 KKRYRIPTKLESYKLICTTNLKPLCLIVLLQELHGEKCLVFTSSVESSHRLSTLLGFFED 366
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ K +E + R K + +F+ KID+++ +D +ARGI ++ + VINY
Sbjct: 367 LPFK-------FSEFSRLQRESTRRKTLADFKEGKIDVLIGTDIMARGIHIDGLKYVINY 419
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P +K YIHR GRTAR G G+ TL+ HE
Sbjct: 420 DMPPYVKTYIHRAGRTARAGESGSCFTLLRKHE 452
>gi|242066828|ref|XP_002454703.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
gi|241934534|gb|EES07679.1| hypothetical protein SORBIDRAFT_04g035895 [Sorghum bicolor]
Length = 519
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 109/215 (50%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
YP R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 270 CYP-RLAKIVLSATLTQDPSKLSQLELHHPLL------------------------LNSG 304
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ L F ++ + +HRL+ LL +
Sbjct: 305 -KKRYRIPTKLESYKLICKSNLKPLSLIVLLQELQGNKCLVFTSSVESSHRLSTLLCFFE 363
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N+ K + YS L+ + R K ++ F+ KID+++ +D +ARGI ++ + VI
Sbjct: 364 NLPFKFSE--------YSRLQRESTRRKTLEAFKEGKIDVLIGTDRMARGIHIDGLRYVI 415
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 416 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 450
>gi|341900773|gb|EGT56708.1| hypothetical protein CAEBREN_07124 [Caenorhabditis brenneri]
Length = 544
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 111/204 (54%), Gaps = 14/204 (6%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
PQ+++ SATLS D E+LH +LF+PKLF++ T +S + D++S G+
Sbjct: 258 PQKIVLSATLSKDVEELHLWNLFKPKLFSAT----ATKAKDISSGISQVDHVS----GRL 309
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ +S +L T PL +Y I ++ L FVN ++RLA +L +
Sbjct: 310 ALPSSISHRLITSEAKFHPLAVYHQIIRNKFNRTLIFVNEVSSSNRLAHVLKEL------ 363
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+++ + + L +R K++++F + +++ SD LARG D+ +D VINY P
Sbjct: 364 CKESEIEVDYFTAQLFGKRRYKMLEKFNKNPNRVLICSDVLARGTDLNKVDCVINYNLPA 423
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ K ++HR GRT R G++G +++
Sbjct: 424 DDKLFVHRAGRTGRAGQEGNVISV 447
>gi|71004804|ref|XP_757068.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
gi|46096872|gb|EAK82105.1| hypothetical protein UM00921.1 [Ustilago maydis 521]
Length = 870
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/224 (33%), Positives = 118/224 (52%), Gaps = 26/224 (11%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q+LLFSATL+ DP K+ L L P T Q T+S D + + +
Sbjct: 594 QKLLFSATLTRDPAKIAALGLRNPHYIT----------VQDTNSAGDEDQGRANGVQQHE 643
Query: 82 -FTTPAELSEKLTTCSTNLKPL-VLYQLIRKH-------AMQGVLCFVNTAQGAHRLARL 132
F+ P L E + ++ KP +LY L R ++ LCF + A RL +L
Sbjct: 644 QFSLPHSLHEHMLVTTSADKPFHLLYLLHRPDDVNNELGRIRKALCFTKSVDSAARLVKL 703
Query: 133 LHHIDNVATKGA----GTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGI 187
L + V + + G++ + + YS +LK R +I+ F + +IDL+V SD ++RGI
Sbjct: 704 LEIFEEVRVENSLIARGSRALVVKNYSSELKPSDRQRILSAFEKGEIDLLVCSDLISRGI 763
Query: 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D+ +++ VI+Y+AP + KY+HR+GRTAR G+ G + TLV E
Sbjct: 764 DLPSVEHVISYDAPIDPAKYVHRVGRTARAGKHGDAWTLVEEQE 807
>gi|224077862|ref|XP_002305441.1| predicted protein [Populus trichocarpa]
gi|222848405|gb|EEE85952.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 111/215 (51%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+YP R +++ SATL+ DP KL QL+L P T TG
Sbjct: 267 SYP-RLAKMVLSATLTQDPSKLAQLNLHHPLFLT-------TGQR--------------- 303
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C + LKPL L +++ + + F ++ + HRL LL+
Sbjct: 304 ---RYQLPEKLESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFG 360
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K+ I E YS L+ R+K ++ FR +I ++V+SD + RG+D+E + +I
Sbjct: 361 DL-------KVKIKE-YSGLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNII 412
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K Y+HR GRTAR G+ G +TL+ THE
Sbjct: 413 NYDMPAYVKTYVHRAGRTARAGQTGRCITLLRTHE 447
>gi|320581353|gb|EFW95574.1| ATP-dependent RNA helicase DBP6 (DEAD-box protein 6) [Ogataea
parapolymorpha DL-1]
Length = 549
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 119/218 (54%), Gaps = 30/218 (13%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D + +Y + +L+FSATL+ D EKL L LF+PKL ++E +
Sbjct: 289 DFYNSYTVKCSKLIFSATLTTDSEKLFHLKLFKPKLVVI------------NNAEQLVNE 336
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNL---KPLVLYQLIRK--HAMQGVLCFVNTAQGAHR 128
L + P L EK + L KP+VL + + + ++ G L F + + A R
Sbjct: 337 L-------YQIPPNLDEKFVRVNEKLAFFKPMVLLRYLEQPEYSSHG-LVFTKSNESAIR 388
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
LARLL + ++ G +NI V LK +R KI+++F +++A+D +ARG++
Sbjct: 389 LARLL----TLLSEKLGLDLNIMSVNYSLKSHERAKILKKFHEEG-GILIATDLIARGMN 443
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
+E+I V+NY+ P + K+YIHR+GRTAR R GT+VTL
Sbjct: 444 IESIKFVLNYDLPLSTKEYIHRVGRTARANRHGTAVTL 481
>gi|443895519|dbj|GAC72865.1| protein kinase [Pseudozyma antarctica T-34]
Length = 860
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 117/221 (52%), Gaps = 22/221 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE-PAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q+LLFSATL+ DP K+ L L P T + PA G E+G + +F
Sbjct: 585 QKLLFSATLTRDPAKIAALGLRNPHYITVQDDNPAADG-------ESGLAERAQH--ERF 635
Query: 83 TTPAELSEKLTTCSTNLKPL-VLYQLIRKHAMQGV------LCFVNTAQGAHRLARLLHH 135
+ P L E + ++ KP +LY L R Q LCF + + A RL +L+
Sbjct: 636 SLPHSLHEHMLVTTSADKPFHLLYLLHRPDDEQAAAKIRKALCFTKSVESAARLVKLVEM 695
Query: 136 IDNVATKGA----GTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+ V + G + + + YS +L+ R +I+ +F +IDL+V SD ++RGID+
Sbjct: 696 FEEVRQESGLIARGARPMVVKNYSSELRPSDRQRILAQFGNGEIDLLVCSDLISRGIDLP 755
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++ VI+Y+AP + KY+HR+GRTAR G+ G + TLV E
Sbjct: 756 SVEHVISYDAPVDSAKYVHRVGRTARAGKHGDAWTLVEEQE 796
>gi|393245833|gb|EJD53343.1| DEAD-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 522
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 37/222 (16%)
Query: 20 PSRP--QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
P RP Q++L SATL+ DP +L L L P+ F VV +G G P E GA
Sbjct: 280 PPRPSCQKMLLSATLTRDPGRLAALGLHHPQYF--VVSSSG-GAAAP--EEFGA------ 328
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM--------QGVLCFVNTAQGAHRL 129
P L E+ KPLVL ++R+H + + VL F + + A RL
Sbjct: 329 ------VPEGLDERFCVIDPAEKPLVLAWILREHVLLAAGGEEKKQVLVFCKSVEAATRL 382
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
LL A ++ + + D +++ FR +D++V SD ++RG+DV
Sbjct: 383 GVLL----------AAMLADVGKSVASYSSDAPRSLLERFRTGAVDVLVCSDLVSRGLDV 432
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ V+NY+AP + +KY+HR+GRTAR GR+G + T+V E
Sbjct: 433 PSVAAVLNYDAPVDARKYVHRVGRTARAGRRGDAWTMVEGQE 474
>gi|47497023|dbj|BAD19076.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
gi|47497232|dbj|BAD19277.1| putative DEAD box-like RNA helicase [Oryza sativa Japonica Group]
Length = 517
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++P R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 267 SFP-RLAKIVLSATLTQDPSKLSQLELQHPLL------------------------LNSG 301
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ + L F ++ + +HRL+ LL +
Sbjct: 302 -KKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFE 360
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K + YS L+ + R K + F+ KID+++ +D +ARGI ++ + VI
Sbjct: 361 DLPFKFSE--------YSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVI 412
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 413 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 447
>gi|223999483|ref|XP_002289414.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220974622|gb|EED92951.1| atp-dependent RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 494
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 38/225 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P +++LFSATL+ DP+KL L L PK F A+ + +
Sbjct: 221 PVPLRKMLFSATLTQDPQKLAVLGLKNPKHFD-------------------ANQVENIKA 261
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLY-------QLIRKHAMQGV------LCFVNTAQGA 126
G ++ P L+E++ C+ KP+VL QL A GV + F ++
Sbjct: 262 GSYSVPEGLTERMVECTAEQKPMVLLALLLDTEQLHSDSAGDGVKGVNLSIVFTSSVDST 321
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR----RKIDLVVASDN 182
HRLARLL + G G IAE S + QR I++ R ++ ++V SD
Sbjct: 322 HRLARLLQLLWEAG--GYGPSSTIAEFSSSISAKQRAGILRRCRSSNVSNRVSVLVCSDG 379
Query: 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
++RG+D+ + VINY+ P K Y+HR GRTAR G++G +++++
Sbjct: 380 MSRGMDLPCVSAVINYDVPSYAKTYVHRCGRTARAGKEGKAISVL 424
>gi|281209875|gb|EFA84043.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 559
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 39/224 (17%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
SR +LL SAT+S++PEK+ L L P F S N S
Sbjct: 269 SRVIKLLLSATMSYNPEKISLLKLNAPLYFQS--------------------NKISEL-- 306
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLI-------------RKHAMQGVLCFVNTAQGAH 127
K+T P L E C ++ KPL L +I + + ++CF N+
Sbjct: 307 KYTIPDTLKESYIACHSDQKPLALISVIGNIFKSKQQQQTDQNDNIARIICFTNSIDITQ 366
Query: 128 RLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGI 187
RL LL I V G K+ A+ S + +R+ +++ F I++++ SD LARG+
Sbjct: 367 RLNTLLGFIGEVD----GVKLKPAQYSSSINSIERSNLLKLFANGDINVLICSDILARGM 422
Query: 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D+ N+D VINY AP + Y+HR+GRTAR GR+G++ T+V E
Sbjct: 423 DLPNVDAVINYNAPPSAVLYVHRVGRTARAGRKGSAYTIVAREE 466
>gi|115449213|ref|NP_001048386.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|122170850|sp|Q0DWT8.1|RH1_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|113537917|dbj|BAF10300.1| Os02g0795900 [Oryza sativa Japonica Group]
gi|215740532|dbj|BAG97188.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 521
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++P R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 271 SFP-RLAKIVLSATLTQDPSKLSQLELQHPLL------------------------LNSG 305
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ + L F ++ + +HRL+ LL +
Sbjct: 306 -KKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFE 364
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K + YS L+ + R K + F+ KID+++ +D +ARGI ++ + VI
Sbjct: 365 DLPFKFSE--------YSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVI 416
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 417 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 451
>gi|125541460|gb|EAY87855.1| hypothetical protein OsI_09277 [Oryza sativa Indica Group]
Length = 499
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++P R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 249 SFP-RLAKIVLSATLTQDPSKLSQLELQHPLL------------------------LNSG 283
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ + L F ++ + +HRL+ LL +
Sbjct: 284 -KKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFE 342
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K + YS L+ + R K + F+ KID+++ +D +ARGI ++ + VI
Sbjct: 343 DLPFKFSE--------YSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVI 394
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 395 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 429
>gi|125584003|gb|EAZ24934.1| hypothetical protein OsJ_08714 [Oryza sativa Japonica Group]
Length = 499
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++P R +++ SATL+ DP KL QL L P L L+SG
Sbjct: 249 SFP-RLAKIVLSATLTQDPSKLSQLELQHPLL------------------------LNSG 283
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C +NLKPL L L+++ + L F ++ + +HRL+ LL +
Sbjct: 284 -KKRYRIPTKLQSYKLVCKSNLKPLSLIVLLQELRGEKCLVFTSSVESSHRLSTLLEFFE 342
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K + YS L+ + R K + F+ KID+++ +D +ARGI ++ + VI
Sbjct: 343 DLPFKFSE--------YSRLQRESTRRKTLDAFKEGKIDVLIGTDRMARGIHIDGLRYVI 394
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +K YIHR GRTAR G G+ T + HE
Sbjct: 395 NYDMPPYVKTYIHRAGRTARAGESGSCFTFLRKHE 429
>gi|66800335|ref|XP_629093.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
gi|74896742|sp|Q54BD6.1|DDX51_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx51; AltName:
Full=DEAD box protein 51
gi|60462461|gb|EAL60682.1| hypothetical protein DDB_G0293740 [Dictyostelium discoideum AX4]
Length = 563
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 40/230 (17%)
Query: 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ W F + +LL SAT++++P K+ L L P FT T T+
Sbjct: 242 LCWSEF-----KLVKLLLSATMTYNPSKISLLQLNAPLFFT-------TSKTKEI----- 284
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---------VLCFVN 121
K++ P+ L E + + KPLVL +I + ++ ++CF
Sbjct: 285 ----------KYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTK 334
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
+ HRL LL I V K E S L +R ++ F+ +ID+++ SD
Sbjct: 335 SVDITHRLNTLLKLIGQVD----KLKFTCEEYSSSLSTVERADLLSRFKLNQIDILICSD 390
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++RG+D+++IDVVINY P NI Y+HR+GRTAR G G S T+V E
Sbjct: 391 IMSRGMDIQDIDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSE 440
>gi|71997889|ref|NP_498690.2| Protein ZK686.2 [Caenorhabditis elegans]
gi|37999937|sp|P34668.2|YO12_CAEEL RecName: Full=Putative ATP-dependent RNA helicase ZK686.2
gi|373218849|emb|CCD63647.1| Protein ZK686.2 [Caenorhabditis elegans]
Length = 593
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 108/204 (52%), Gaps = 15/204 (7%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
PQ+++ SATLS D E+LH +LF+P+LF++ D TS D++S G+
Sbjct: 314 PQKIVLSATLSKDVEELHLWNLFKPRLFSATA--VSVKDI--TSGIPQVDHVS----GRL 365
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ +S +L PL +YQ I ++ L FVN ++RLA +L +
Sbjct: 366 ALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKEL------ 419
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + L +R K++++F + + +++ SD LARG D+ +D VINY P
Sbjct: 420 -CKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPA 478
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ K ++HR GRT R G+ G +++
Sbjct: 479 DDKLFVHRAGRTGRAGQDGYVISV 502
>gi|255584180|ref|XP_002532829.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223527420|gb|EEF29559.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 469
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/215 (34%), Positives = 106/215 (49%), Gaps = 35/215 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+YP R +++ SATL+ DP KL QL L P T TG +
Sbjct: 240 SYP-RLAKMVLSATLTQDPSKLVQLDLHHPLFLT-------TGQS--------------- 276
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
++ P +L C LKPL L L++ + + F ++ + HRL LL
Sbjct: 277 ---RYQLPEKLESYRVICEPKLKPLYLVALLQNLVGEKCIVFASSVESTHRLCTLLKFFG 333
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ K+ I E YS L+ R+K ++ FR KI ++V+SD + RG+DVE + VI
Sbjct: 334 DL-------KVKIKE-YSGLQHQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVRNVI 385
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P IK YIHR GRTAR G+ G TL+ E
Sbjct: 386 NYDKPAYIKTYIHRAGRTARAGQVGRCFTLLHKEE 420
>gi|391327051|ref|XP_003738021.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Metaseiulus
occidentalis]
Length = 429
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 109/208 (52%), Gaps = 27/208 (12%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
++LL+SATL DPEKL ++LF P++F + E A D F
Sbjct: 197 RKLLYSATLMSDPEKLRHVNLFYPRVFHAKAEHANRSDKA------------------FA 238
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L E+ C +++PL+++ L M ++ F + + HRL + +
Sbjct: 239 LPDSLEERKIFCDIDVRPLLVWWLFVHQKMGRMIVFARSREECHRL--------RIVIEF 290
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G+ + ++ +D+K QR K + +F D+++A+ L+RG+D+++++ V+ Y AP +
Sbjct: 291 MGS-CKVVDLSADMKKRQRQKALADFDEGLCDMIIATQVLSRGMDLKSVEHVVLYHAPTS 349
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+H +GRTAR +QG S+ L++ E
Sbjct: 350 AEDYVHMVGRTARANKQGKSLVLLSPAE 377
>gi|343426780|emb|CBQ70308.1| related to DBP6-ATP-dependent RNA helicase [Sporisorium reilianum
SRZ2]
Length = 852
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 119/222 (53%), Gaps = 21/222 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL+ DP K+ L L P T V + GD E G N + +F+
Sbjct: 574 QKLLFSATLTRDPAKIAALGLRNPHYIT-VQDTHSAGD-----DENGRVNGAQQH-ERFS 626
Query: 84 TPAELSEKLTTCSTNLKPL-VLYQLIRKHA--------MQGVLCFVNTAQGAHRLARLLH 134
P L E + ++ KP +LY L R ++ LCF + A RL +L+
Sbjct: 627 LPHSLREHMLVTTSADKPFHLLYLLHRPDQDVDNNDSRIRKALCFTKSVDSAARLVKLIE 686
Query: 135 HIDNVATKGA----GTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
+ V ++ G++ + + YS +LK R +I+ F + +IDL+V SD ++RGID+
Sbjct: 687 IFEQVRSENGLVSRGSRPLVVKNYSSELKPSDRQRILAAFAQGEIDLLVCSDLISRGIDL 746
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++ V++Y+AP + KY+HR+GRTAR G+ G + TLV E
Sbjct: 747 PSVEHVVSYDAPIDPAKYVHRVGRTARAGKHGDAWTLVEEQE 788
>gi|449433605|ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
gi|449490565|ref|XP_004158642.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
Length = 517
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 107/214 (50%), Gaps = 35/214 (16%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P T TG
Sbjct: 265 YP-RLAKMVLSATLTQDPGKLAQLDLHHPLFLT-------TGKR---------------- 300
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L + C + LKPL L L++ + + F ++ + HRL LL+ ++
Sbjct: 301 --RYKLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFED 358
Query: 139 VATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ ++ I E YS L+ R+K + FR +I ++V+SD + RG+DVE + VIN
Sbjct: 359 L-------ELKIKE-YSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVIN 410
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ P IK YIHR GRTAR G+ G TL+ E
Sbjct: 411 YDMPAFIKTYIHRAGRTARAGQSGRCFTLLRKDE 444
>gi|254572509|ref|XP_002493364.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|238033162|emb|CAY71185.1| Essential protein involved in ribosome biogenesis [Komagataella
pastoris GS115]
gi|328352620|emb|CCA39018.1| hypothetical protein PP7435_Chr3-0044 [Komagataella pastoris CBS
7435]
Length = 721
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 120/223 (53%), Gaps = 37/223 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D EKL L L++P+L VV G E+G D G +
Sbjct: 434 QKLVFSATLTTDAEKLSHLQLYRPRLL--VVNDHGV--------ESGKD----GSSELYQ 479
Query: 84 TPAELSE-KLTTCSTN----LKPLVLYQLIRKHAMQG--------------VLCFVNTAQ 124
P L E LT +T+ KPL+L++L+ ++ + VL F+ + +
Sbjct: 480 LPPSLDELSLTLSNTDGVEFFKPLILFKLLTEYVYRARMGDMNVSVPFKANVLVFIRSNE 539
Query: 125 GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
+ R+ +LL ++ + K+ + V S L + R + +F R KID++VA+D +A
Sbjct: 540 ASARMEKLL----DLLAEAFRKKLRVKSVNSLLDPETRERRFHDFTRNKIDVLVATDVMA 595
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
RG+D+ NI+ VINY+ P + ++Y+HR+GRTAR + G + + V
Sbjct: 596 RGMDLPNINHVINYDLPGSTREYVHRVGRTARANKFGVATSFV 638
>gi|397634960|gb|EJK71658.1| hypothetical protein THAOC_06880 [Thalassiosira oceanica]
Length = 790
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 109/221 (49%), Gaps = 29/221 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
++LLFSATL+ DP+KL +L L PK + D GK+
Sbjct: 508 RKLLFSATLTQDPQKLARLGLDNPKHY----------DANYLKKHQSGSATEEAKAGKYF 557
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLI----RKHAM--------QGVLCFVNTAQGAHRLAR 131
P L E + C+ KPLVL L+ R+H M + F ++ HRLAR
Sbjct: 558 LPVGLRESMVECTAEQKPLVLLALLLDERRQHKMVESSEQAADLTIVFTSSVDSTHRLAR 617
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR-----RRKIDLVVASDNLARG 186
LL + A G G ++AE S + QR I++ R K+ ++V SD +ARG
Sbjct: 618 LLQLL--WAAGGYGLPSHVAEYSSSIDTKQRAAILRRCRSSLGENEKVSVLVCSDGMARG 675
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+D+ ++ VVINY+ P K YIHR GRTAR GR G ++ ++
Sbjct: 676 MDLPSVGVVINYDVPSFAKTYIHRCGRTARCGRTGRAINVL 716
>gi|440790460|gb|ELR11743.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 249
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 9/140 (6%)
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
+ CS KPLVL L+ + LCF ++ + HRL LL + +A
Sbjct: 1 MVICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLMGQTG---------VA 51
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
E S L +R +II++F + I +V+ASD ++RG+D+E+++ VINY+ P IK Y+HR+
Sbjct: 52 EYSSTLPQRKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVINYDVPPFIKTYVHRV 111
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRTAR GRQG + TL+ E
Sbjct: 112 GRTARAGRQGKTYTLLLKSE 131
>gi|34782983|gb|AAH12461.2| DDX51 protein, partial [Homo sapiens]
Length = 186
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 82/133 (61%), Gaps = 9/133 (6%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
CS + KPLV+ L+ + VLCF N+ + +HRL L+ V ++AE
Sbjct: 6 CSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGGV---------DVAEFS 56
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
S QR I+++F + KI L++++D ARGIDV+ +++V+NY+AP ++ Y+HR+GRT
Sbjct: 57 SRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQGVELVVNYDAPQYLRTYVHRVGRT 116
Query: 215 ARGGRQGTSVTLV 227
AR G+ G + TL+
Sbjct: 117 ARAGKTGQAFTLL 129
>gi|294949064|ref|XP_002786034.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239900142|gb|EER17830.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI-- 79
R QR+LFSAT++ +P+KL QL+L +P S TQ T + A +NL F+
Sbjct: 262 RCQRMLFSATMTSNPQKLAQLALSRPFFLLS---------TQ-TGAHATPENLRHRFVVA 311
Query: 80 -GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ P L L +Y A + F + + AHRL RLL I
Sbjct: 312 RAEQKKPGVLVSILGE---------IYPPTASEATSRTMIFCGSVEHAHRLTRLLQ-ICV 361
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V + + I E + L QR ++++ FR +I ++V SD ARG+D +D V+ Y
Sbjct: 362 VGNENIKEGIKIREFSAALNQKQRVRLLEAFRTGRIHVLVCSDVAARGLDFREVDHVLQY 421
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P+N++ YIHR GR R GRQG S T++
Sbjct: 422 DVPNNVQGYIHRCGRAGRAGRQGCSSTIL 450
>gi|328867619|gb|EGG16001.1| putative RNA helicase [Dictyostelium fasciculatum]
Length = 506
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 30/215 (13%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
SR +LL SAT++++PEK+ L L P ++S + +
Sbjct: 227 SRLIKLLLSATMTYNPEKISLLELNAPLYYSSTKKKESST-------------------- 266
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLI------RKHAMQGVLCFVNTAQGAHRLARLLH 134
K++ P L E C + KPL L ++ +K ++CF N + A RL L+
Sbjct: 267 KYSMPDSLQEYYVACPASQKPLSLIHIVYSILLKKKSDNARIICFTNNKEIAQRLHTLIG 326
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
++ + G + A S + +R+ +++ + I+L++ SD L+RG+DV N+D
Sbjct: 327 LVNEIN----GYNIKPALYSSTVSTIERSHLLESLKNNHINLLICSDILSRGMDVPNVDA 382
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
VINY P Y+HR+GRTAR G++G + T+V T
Sbjct: 383 VINYNLPLTAVLYVHRVGRTARAGKEGEAYTIVDT 417
>gi|150864672|ref|XP_001383606.2| ATP-dependent RNA helicase DBP6 (DEAD-box protein 6)
[Scheffersomyces stipitis CBS 6054]
gi|158514827|sp|A3LSJ2.2|DBP6_PICST RecName: Full=ATP-dependent RNA helicase DBP6
gi|149385928|gb|ABN65577.2| ATP-dependent RNA helicase DBP6 (DEAD-box protein 6)
[Scheffersomyces stipitis CBS 6054]
Length = 591
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 114/209 (54%), Gaps = 28/209 (13%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
PQ+L+FSATL+ D KL L +P+L D + +E F
Sbjct: 350 PQKLIFSATLTTDSGKLSALKFQKPRLVI-------VNDRKQLVNEI------------F 390
Query: 83 TTPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
P+ LSE + T ++KPL+L + L+ + + VL F + + + RL +LL
Sbjct: 391 NVPSSLSEYTIQFGTAKASIKPLILAKYLLENNKLSNVLIFTKSNEASIRLCKLLE---- 446
Query: 139 VATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ MNIA + S + K R KI+++F +KI+++VA+D +ARGID+ +I VIN
Sbjct: 447 LMFGKLHPSMNIAYINSTNNKSAIRTKILKDFSTQKINILVATDLIARGIDILSITDVIN 506
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
Y+ P++ ++Y+HR+GRTAR + G + TL
Sbjct: 507 YDLPNSSREYVHRVGRTARANQTGHAYTL 535
>gi|302839717|ref|XP_002951415.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
gi|300263390|gb|EFJ47591.1| hypothetical protein VOLCADRAFT_61333 [Volvox carteri f.
nagariensis]
Length = 654
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 21/203 (10%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTT 84
+++ SATL+ DP KL +L+L P+ + + A G+++
Sbjct: 293 KIVVSATLTRDPAKLQRLALHHPRFVAT--------------ATAAGGGGGGAAAGRYSL 338
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P LSE CS KPLVL L+++ + Q + F ++ + H+L +L + ++ +
Sbjct: 339 PRSLSEYRLMCSAARKPLVLLALLQEWSGQSTIVFTSSLEMTHKLFLMLSAVQDLPDE-- 396
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
+ E S + R ++ FR ++L+VASD + RG+DV+ + VINY+AP
Sbjct: 397 -----VVEYSSLVPVRARAAALERFRTGSVELLVASDAMTRGMDVDCVQNVINYDAPVYA 451
Query: 205 KKYIHRIGRTARGGRQGTSVTLV 227
K Y+HR GRTAR G+ G +TL+
Sbjct: 452 KTYVHRAGRTARAGKPGRVITLL 474
>gi|297804642|ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
gi|297316041|gb|EFH46464.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata]
Length = 522
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P T TG +
Sbjct: 267 YP-RLVKMVLSATLTQDPSKLIQLDLHHPLFMT-------TGGS---------------- 302
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L C T +KP+ L L++ + + F ++ + RL +LL+ +
Sbjct: 303 --RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD 360
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+ E L R+K ++ FR+ I ++VASD L RG+DV+ + VINY
Sbjct: 361 -------PKIKAKEYSGGLNQSVRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINY 413
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P K +IHR GRTAR G+ G TL++ HE
Sbjct: 414 DMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHE 446
>gi|5281020|emb|CAB45993.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
gi|7268333|emb|CAB78627.1| ATP-dependent RNA helicase like protein [Arabidopsis thaliana]
Length = 474
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P T TG +
Sbjct: 219 YP-RLVKMVLSATLTQDPSKLIQLDLHHPLFMT-------TGGS---------------- 254
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L C T +KP+ L L++ + + F ++ + RL +LL+ +
Sbjct: 255 --RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD 312
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+ E L R+K ++ FR+ I ++VASD L RG+DV+ + VINY
Sbjct: 313 -------PKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINY 365
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P K +IHR GRTAR G+ G TL++ HE
Sbjct: 366 DMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHE 398
>gi|240255886|ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 1
gi|332658259|gb|AEE83659.1| RNA helicase 1 [Arabidopsis thaliana]
Length = 522
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P T TG +
Sbjct: 267 YP-RLVKMVLSATLTQDPSKLIQLDLHHPLFMT-------TGGS---------------- 302
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L C T +KP+ L L++ + + F ++ + RL +LL+ +
Sbjct: 303 --RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD 360
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+ E L R+K ++ FR+ I ++VASD L RG+DV+ + VINY
Sbjct: 361 -------PKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINY 413
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P K +IHR GRTAR G+ G TL++ HE
Sbjct: 414 DMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHE 446
>gi|302787757|ref|XP_002975648.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
gi|300156649|gb|EFJ23277.1| hypothetical protein SELMODRAFT_174931 [Selaginella moellendorffii]
Length = 513
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 41/229 (17%)
Query: 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQ 63
RG+ G V+ R Q+++ SATL+ DP K+ QL L+ P
Sbjct: 250 RGIKGCVV---------PRLQKIIVSATLTRDPAKIAQLGLYHPL--------------- 285
Query: 64 PTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
+ + + +DNL + P +L C KPL L L+ Q + F ++
Sbjct: 286 -SIALSTSDNL-------YKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFTSSV 337
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD-QRNKIIQEFRRRKIDLVVASDN 182
HRL+ L +++ + A YS + R+K + FR + ++VASD
Sbjct: 338 SNTHRLSTFLACFEDLPFR--------AVEYSSFQHQLARSKALAAFRAGEAQVLVASDA 389
Query: 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ARG+DVE + +INY+ P + Y+HR+GRTAR GR G+ TL+ E
Sbjct: 390 MARGMDVEGVTHIINYDMPPFARTYVHRVGRTARAGRSGSCFTLLRKEE 438
>gi|440801982|gb|ELR22922.1| DEAD/DEAH box helicase domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 689
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 36/194 (18%)
Query: 20 PSRPQ---RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
P P+ +LLFSATL+++P+K+ L L P F++ TS+
Sbjct: 475 PEEPEPLHKLLFSATLTNNPKKIAALRLNNPHFFSA------------TST--------- 513
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + P +L E + CS KPLVL L+ + LCF ++ + HRL LL +
Sbjct: 514 ---GLYKMPEKLQEYMVICSLAYKPLVLLYLLEMFDFKRTLCFTSSVESTHRLYLLLTLM 570
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ +AE S L +R +II++F + I +V+ASD ++RG+D+E+++ VI
Sbjct: 571 ---------GQTGVAEYSSTLPQRKRTQIIEKFAKGDIKIVIASDAMSRGLDIEDVENVI 621
Query: 197 NYEAPDNIKKYIHR 210
NY+ P IK Y+HR
Sbjct: 622 NYDVPPFIKTYVHR 635
>gi|294901652|ref|XP_002777458.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
gi|239885094|gb|EER09274.1| ATP-dependent RNA helicase DBP6, putative [Perkinsus marinus ATCC
50983]
Length = 559
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 105/209 (50%), Gaps = 23/209 (11%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI-- 79
R QR+LFSAT++ +P+KL QL+L +P TQ T + A +NL F+
Sbjct: 262 RCQRMLFSATMTSNPQKLAQLALSRPFFLLG---------TQ-TGAHATPENLRHRFVVA 311
Query: 80 -GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ P L L +Y A + F + + AHRLARLL I
Sbjct: 312 RAEQKKPGVLVSILGE---------IYPPTASEATSRTMIFCGSVEHAHRLARLLQ-IYV 361
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V + + I E + L QR ++++ FR +I ++V SD ARG+D +D V+ Y
Sbjct: 362 VGNENIKEGIKIREFSAALNQKQRVRLLEAFRTGRIHVLVCSDVAARGLDFREVDHVLQY 421
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P+N++ YIHR GR R GR+G S T++
Sbjct: 422 DVPNNVQGYIHRCGRAGRAGREGCSSTIL 450
>gi|302794133|ref|XP_002978831.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
gi|300153640|gb|EFJ20278.1| hypothetical protein SELMODRAFT_109199 [Selaginella moellendorffii]
Length = 513
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 108/229 (47%), Gaps = 41/229 (17%)
Query: 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQ 63
RG+ G V+ R Q+++ SATL+ DP K+ QL L+ P
Sbjct: 250 RGIKGCVV---------PRLQKIIVSATLTRDPAKIAQLRLYHPL--------------- 285
Query: 64 PTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
+ + + +DNL + P +L C KPL L L+ Q + F ++
Sbjct: 286 -SVALSTSDNL-------YKLPEQLRSYTIICKAQQKPLKLVTLLHSLGDQRTVIFTSSV 337
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD-QRNKIIQEFRRRKIDLVVASDN 182
HRL+ L +++ + A YS + R+K + FR + ++VASD
Sbjct: 338 SNTHRLSTFLACFEDLPFR--------AVEYSSFQHQLARSKALAAFRAGEAQVLVASDA 389
Query: 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ARG+DVE + +INY+ P + Y+HR+GRTAR GR G+ TL+ E
Sbjct: 390 MARGMDVEGVTHIINYDMPPFARTYVHRVGRTARAGRSGSCFTLLRKEE 438
>gi|357491905|ref|XP_003616240.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355517575|gb|AES99198.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 497
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 109/214 (50%), Gaps = 35/214 (16%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP +L QL+L P L L +G
Sbjct: 265 YP-RLAKMVLSATLTQDPGRLIQLNLHHPLL------------------------LKAGQ 299
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ ++ P L C +KPL L L++ + L F + HRL +LL+ ++
Sbjct: 300 M-RYRLPENLESYKLICEKKVKPLYLIALLKSLGEEKCLVFTKSVDSTHRLCQLLNCFED 358
Query: 139 VATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ +++I E YS L+ + R+K + EFR+ ++++SD L RG+DVE + VIN
Sbjct: 359 L-------RIDIKE-YSSLQHQRVRSKTLNEFRKGVFQVLLSSDALTRGMDVEGVRNVIN 410
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ P IK ++HR GRTAR G+ G TL++ E
Sbjct: 411 YDVPKFIKTHVHRAGRTARAGQTGRCFTLMSEDE 444
>gi|219122463|ref|XP_002181564.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406840|gb|EEC46778.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 453
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 33/223 (14%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + ++ L SATL+ DP+KL L L PK F V TG GF
Sbjct: 238 PVQLRKFLVSATLTRDPQKLASLKLVNPKHFD--VHQLRTG--------------HQGFF 281
Query: 80 G----KFTTPAELSEKLTTCSTNLKPLVLYQLIRKH---------AMQGVLCFVNTAQGA 126
K++ P L E C+ KP+VL L+ + Q V+ F +
Sbjct: 282 NTNTKKYSMPEGLHEHTVECTAEQKPIVLLALVLDQLTPQQSQSSSKQSVIVFTASLDST 341
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR--RRKIDLVVASDNLA 184
HRLARLL + + G G ++ E S L +R+ +++ + K+ +VV SD ++
Sbjct: 342 HRLARLLQLL--WVSAGYGEPDSVVEFSSALNQHERSALMKRCNDPQDKVSVVVCSDGMS 399
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
RG+D++ + VINY+ P K Y+HR GRTAR G++G +++L+
Sbjct: 400 RGMDIDAVRAVINYDVPGLAKTYVHRCGRTARAGKEGHAISLL 442
>gi|3445416|emb|CAA72041.1| DEAD box-like RNA helicase [Arabidopsis thaliana]
Length = 450
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 33/213 (15%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
YP R +++ SATL+ DP KL QL L P T TG +
Sbjct: 195 YP-RLVKMVLSATLTQDPSKLIQLDLHHPLFMT-------TGGS---------------- 230
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P +L C T +KP+ L L++ + + F ++ + RL +LL+ +
Sbjct: 231 --RYRLPEKLECLRLICETGMKPVYLGALLKSWEGEKCIIFTSSGETTRRLCKLLNFFGD 288
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+ E L R+K ++ FR+ I ++VASD L RG+DV+ + VINY
Sbjct: 289 -------PKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINY 341
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P K +IHR GRTAR G+ G TL++ HE
Sbjct: 342 DMPPFAKTFIHRAGRTARAGQAGRCFTLLSNHE 374
>gi|356526389|ref|XP_003531800.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 617
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 34/212 (16%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
SR +++ SATL+ DP +L QL+L P LF LS+G +
Sbjct: 379 SRLAKIVLSATLTRDPGRLAQLNLHHP-LF-----------------------LSAGKM- 413
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++ P L C +KPL L L++ + + F + + H L +LL+ ++
Sbjct: 414 RYRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRSVESTHHLCKLLNCFGDL- 472
Query: 141 TKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+ I E +S LK + R+K + EFRR + ++V+SD + RG+DVE + VINY+
Sbjct: 473 ------KIGIKE-FSGLKHQRVRSKTVGEFRRGEFQVLVSSDAMTRGMDVEGVRNVINYD 525
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K Y+HR GRTAR G+ G TL++ E
Sbjct: 526 MPKYTKTYVHRAGRTARAGQTGRCFTLMSKDE 557
>gi|168044025|ref|XP_001774483.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674195|gb|EDQ60707.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
R + L SATL+ DP K+ QL L+ P P++ E+ +
Sbjct: 275 RVMKFLLSATLTKDPAKIAQLDLYWPLYLA------------PSAEES-----------R 311
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ P +L + KPLVL L+ + Q + F + + H+L LL H
Sbjct: 312 YHLPKQLKAFKLITRASKKPLVLVALLEQFKNQSTIIFNASVEATHQLFLLLRHF----- 366
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + ++ E S R K + +F K+ ++VASD + RG+DVE + VINY+ P
Sbjct: 367 -YAGQEFSVVEYSSRQPQHIRRKALADFTDGKVHVIVASDAMTRGMDVEGVANVINYDVP 425
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
K Y+HR+GRTAR G+ G + TL+ E
Sbjct: 426 VYAKTYVHRVGRTARAGQAGRAFTLLVKKE 455
>gi|30249980|ref|NP_842050.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
gi|30139087|emb|CAD85951.1| rhlE; ATP-dependent RNA helicase RhlE [Nitrosomonas europaea ATCC
19718]
Length = 498
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 104/217 (47%), Gaps = 41/217 (18%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
L P R Q L+FSAT S + KL SL + QP EA N
Sbjct: 182 LLSPQR-QSLMFSATFSGEIRKLAD-SLLK----------------QPVRIEAAVQN--- 220
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--H 134
T +S + + K +L LIR+ ++ L FV T GA LA++L H
Sbjct: 221 ------TVNESISHVIHWVKPDSKFALLLHLIRQQNLKQALIFVKTKHGASHLAQMLSRH 274
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
I VA ++ D QR + + EF+ + ++VA+D ARGID+E +
Sbjct: 275 EISAVA------------IHGDRNQQQRTQALAEFKHGDVQILVATDVAARGIDIEKLSH 322
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINYE P N + Y+HRIGRT R G +G +++LV+ HE
Sbjct: 323 VINYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHE 359
>gi|390604335|gb|EIN13726.1| DEAD-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 785
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL +P +LF P S A
Sbjct: 373 SCPKSRQTMLFSATMTDSVDELVKMSLDKPVRLFVD-----------PKRSTA------K 415
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G I +F ++ + + +L L ++ GV+ F + + AH++ R++ +
Sbjct: 416 GLIQEFV-------RVRAGKESERSAILVALCKRTFKSGVIIFFRSKKLAHQM-RIVFSL 467
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ DL +QR K +Q+FR +D ++A+D +RG+D++ +D+VI
Sbjct: 468 ---------LYMKCAELHGDLTQEQRLKALQQFRDGSVDFLMATDLASRGLDIKGVDIVI 518
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 519 NYDMPGQLAQYLHRVGRTARAGKKGRSVTLV 549
>gi|225443938|ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
gi|297740757|emb|CBI30939.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 9/152 (5%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++ P +L C + LKPL L L+R + + F ++ + AHRL LL+ ++
Sbjct: 301 RYQLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQ 360
Query: 141 TKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K I E YS L+ + R+K ++EFR KI ++++SD + RG+DVE + VINY+
Sbjct: 361 IK-------IGE-YSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVRNVINYD 412
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P IK YIHR GRTAR G+ G TL+ E
Sbjct: 413 VPKFIKTYIHRAGRTARAGQTGRCFTLLRKDE 444
>gi|401883807|gb|EJT47994.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 743
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 21/208 (10%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-FT 83
+LLFSATL+ DP K+ QL+L P+ + + S IG+ F
Sbjct: 510 KLLFSATLTRDPAKVAQLNLTSPEYYIV------------------SSTRSITQIGQAFE 551
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P+ L+E+ LKPL L L+ + F + A RL RLL + +
Sbjct: 552 LPSSLTERSIILPPQLKPLNLLYLLHSEGAAPSIVFTKSVDAASRLVRLLTYFEQAYI-- 609
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K+++A D+K +R ++ +F K+D++V SD ++RGID+ ++ V++Y+ P +
Sbjct: 610 GGKKLSVASFTRDMKPSERKTMLSDFAAGKLDVLVCSDLISRGIDLPSVAHVVSYDVPLD 669
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ KY+HR GRTAR GR GT T+V E
Sbjct: 670 MTKYVHRAGRTARAGRDGTVWTMVEKQE 697
>gi|376297009|ref|YP_005168239.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans ND132]
gi|323459571|gb|EGB15436.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
ND132]
Length = 369
Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 96/209 (45%), Gaps = 37/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+R Q LLFSAT+ D KL + L PK +TQP S
Sbjct: 175 PARRQNLLFSATMPQDIRKLAENILNDPKTVQ-------VANTQPVES------------ 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ N K +L +L+ + Q VL F T A LAR L
Sbjct: 216 --------VEHSFYATENNRKSELLTKLLDRAEHQSVLVFTKTKHKAKNLARKL------ 261
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG+ N + ++ +QR + + FR D++VA+D ARGID E I VIN++
Sbjct: 262 ----AGSGYNATFLQGNMSQNQRQRALDGFRDGSYDIMVATDIAARGIDCERISHVINFD 317
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD ++ Y HRIGRT R GR G +V+LVT
Sbjct: 318 MPDTVETYTHRIGRTGRAGRSGHAVSLVT 346
>gi|406696286|gb|EKC99578.1| ATP-dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 743
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 108/208 (51%), Gaps = 21/208 (10%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-FT 83
+LLFSATL+ DP K+ QL+L P+ + + S IG+ F
Sbjct: 510 KLLFSATLTRDPAKVAQLNLTSPEYYIV------------------SSTRSITQIGQAFE 551
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P+ L+E+ LKPL L L+ + F + A RL RLL + +
Sbjct: 552 LPSSLTERSIILPPQLKPLNLLYLLHSEGAAPSIVFTKSVDAASRLVRLLTYFEQAYI-- 609
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K+++A D+K +R ++ +F K+D++V SD ++RGID+ ++ V++Y+ P +
Sbjct: 610 GGKKLSVASFTRDMKPSERKTMLSDFAVGKLDVLVCSDLISRGIDLPSVAHVVSYDVPLD 669
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ KY+HR GRTAR GR GT T+V E
Sbjct: 670 MTKYVHRAGRTARAGRDGTVWTMVEKQE 697
>gi|391330319|ref|XP_003739611.1| PREDICTED: ATP-dependent RNA helicase DDX51-like [Metaseiulus
occidentalis]
Length = 265
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
++LL+SATL DPEKL ++LF P++F + E A D F
Sbjct: 51 RKLLYSATLMSDPEKLRHVNLFYPRVFHAKAEHANRSDKA------------------FA 92
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P L E+ C +++PL+++ L M ++ F + + HRL + +
Sbjct: 93 LPDSLEERKIFCDIDVRPLLVWWLFVHQKMGRMIVFARSREECHRL--------RIVIEF 144
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G+ + ++ +D+K QR K + +F D+++A+ L+RG+D+++++ V+ Y AP +
Sbjct: 145 MGS-CKVVDLSADMKKRQRQKALADFDEGLCDMIIATQVLSRGMDLKSVEHVVLYHAPTS 203
Query: 204 IKKYIHRIGRTARGGRQGTSVT 225
+ Y+H +GRTAR + +++
Sbjct: 204 AEDYVHMVGRTARANKTLKAIS 225
>gi|255726860|ref|XP_002548356.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240134280|gb|EER33835.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 608
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 111/203 (54%), Gaps = 28/203 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+++FSATL+ D KL L F+P+L D++ +E FT
Sbjct: 369 QKMVFSATLTTDAGKLSSLKFFKPRLII-------VNDSKQLVNEI------------FT 409
Query: 84 TPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P LSE L +LKPL+L + LI K + VL F + + + RLA LL +
Sbjct: 410 VPNTLSEYKIHLGVAKNSLKPLILARFLISKGKLSNVLIFTKSNESSIRLAELL----TI 465
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K +N++ + S + + R KI+++F + I++++A+D +ARGID+ +I VINY
Sbjct: 466 LFKKLSIDINVSFINSTNNRTAVRTKILKQFSSQGINILIATDLIARGIDLTSITDVINY 525
Query: 199 EAPDNIKKYIHRIGRTARGGRQG 221
+ P++ ++Y+HR+GRTAR + G
Sbjct: 526 DLPNSSREYVHRVGRTARANQVG 548
>gi|256422981|ref|YP_003123634.1| DEAD/DEAH box helicase [Chitinophaga pinensis DSM 2588]
gi|256037889|gb|ACU61433.1| DEAD/DEAH box helicase domain protein [Chitinophaga pinensis DSM
2588]
Length = 444
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 112/217 (51%), Gaps = 43/217 (19%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSL---FQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
T P Q LLFSAT+ P+K+ +L+L QP+ + ++P
Sbjct: 176 TLPKERQNLLFSATM---PDKIRKLALKILHQPEEINIAI-------SKP---------- 215
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
P ++ ++ K ++ QL+ + ++ F + Q +L L
Sbjct: 216 ----------PEKIVQEAFVVFEEQKTGLIKQLLARKEFGCIIIFCSRKQNVKQLTYELK 265
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ ++ E++SDL+ D+R +++ +F+ +K+ ++VA+D L+RGID+E+ID+
Sbjct: 266 K----------ARFSVEEIHSDLEQDKREQVLMDFKNKKLKMLVATDILSRGIDIEDIDL 315
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P++ + YIHRIGRTAR GT+ T+++ E
Sbjct: 316 VINYDVPNDAEDYIHRIGRTARAATDGTAYTIISEKE 352
>gi|261880679|ref|ZP_06007106.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
gi|270332631|gb|EFA43417.1| ATP-dependent RNA helicase DeaD [Prevotella bergensis DSM 17361]
Length = 560
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ +D EK+ Q L P V
Sbjct: 179 PKNCQTIMFSATMPNDIEKMAQNLLKNPAEVKLAV------------------------- 213
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C T K ++ + + ++ V+ F + Q ++ + L +
Sbjct: 214 ---SKPAEKIKQSAYVCYTTQKIEIIKHIFKAGDLKRVIIFSGSKQKVKQINQALAQL-- 268
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N E++SDL QR+ I+ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 269 --------KINSGEMHSDLDQSQRDDIMYKFKSGQIDVLVATDIVARGIDIDDIAMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++TLV +
Sbjct: 321 DVPRDSEDYVHRIGRTARADRDGVAITLVNEDD 353
>gi|441496254|ref|ZP_20978489.1| ATP-dependent RNA helicase [Fulvivirga imtechensis AK7]
gi|441440213|gb|ELR73496.1| ATP-dependent RNA helicase [Fulvivirga imtechensis AK7]
Length = 407
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 111/216 (51%), Gaps = 45/216 (20%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLS---LFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
P + Q LLFSAT+ P K+ +L+ L +P+ V
Sbjct: 177 PKKRQNLLFSATM---PPKIRELARKILHEPEEINIAV---------------------- 211
Query: 77 GFIGKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+ PAE + + N K + L++ +Q V+ F +T A +LA+ L
Sbjct: 212 ------SKPAERIFQAAFIVYDNQKIPLATHLLKAKKLQSVIVFCSTKSAAKQLAKELKA 265
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ K + +++SDL+ +R ++++F+ RKI+++VA+D ++RGIDVE+I++V
Sbjct: 266 L----------KFSAEDIHSDLEQTEREHVLRDFKNRKINILVATDIMSRGIDVEDIELV 315
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P++ + YIHRIGRTAR +G + T V E
Sbjct: 316 INYDVPNDGEDYIHRIGRTARAASKGVAFTFVNEKE 351
>gi|410078383|ref|XP_003956773.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
gi|372463357|emb|CCF57638.1| hypothetical protein KAFR_0C06420 [Kazachstania africana CBS 2517]
Length = 739
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 110/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+R Q LLFSAT++ ++L LSL +P +++P + AD L F+
Sbjct: 390 PTRRQNLLFSATMNSKIKQLVSLSLKKP--VRIMIDPP----------KQAADRLVQEFV 437
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +LY LIRK G ++ FV+ + AHRL +L +
Sbjct: 438 R------------IRKRDHLKPALLYNLIRKLDSTGQKRIVVFVSRKEVAHRLRIILGLL 485
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +AE++ L +QR + +F+ + +++ +D +RG+D+ I++VI
Sbjct: 486 G----------MGVAELHGSLSQEQRLDSVNKFKSLDVPVLICTDLASRGLDIPKIEIVI 535
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 536 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 566
>gi|403217172|emb|CCK71667.1| hypothetical protein KNAG_0H02520 [Kazachstania naganishii CBS
8797]
Length = 754
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 415 PSKRQNLLFSATMNSKIKSLVSLSLRRP--VRIMIDPP----------KQAASKLTQEFV 462
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
NLKP +L+ LIRK +A + ++ FV + AHRL +L +
Sbjct: 463 ------------RIRKRDNLKPALLFNLIRKLDSNAQKRIVVFVARKETAHRLRIILGLL 510
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +AE++ L +QR + + F+ + +++ +D +RG+D+ I+VVI
Sbjct: 511 G----------MAVAELHGSLTQEQRLESVTRFKSLDVPVLICTDLASRGLDIPKIEVVI 560
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVTLV
Sbjct: 561 NYDMPKSHEIYLHRVGRTARAGREGRSVTLV 591
>gi|226509858|ref|NP_001147574.1| ATP-dependent RNA helicase DRS1 [Zea mays]
gi|195612276|gb|ACG27968.1| ATP-dependent RNA helicase DRS1 [Zea mays]
Length = 770
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 337 PKRRQTMLFSATMTEEIDELIKLSLNKPVRL----------EADPS-------------- 372
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + + VL L K + V+ F T Q AHRL +++ +
Sbjct: 373 --LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRL-KIIFGL 429
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ FR++++D ++A+D ARGID+ + VI
Sbjct: 430 SG---------MKAAELHGNLTQAQRLEALELFRKQEVDFLIATDVAARGIDIVGVQTVI 480
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 481 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 512
>gi|149276646|ref|ZP_01882789.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
gi|149232315|gb|EDM37691.1| possible ATP-dependent RNA helicase [Pedobacter sp. BAL39]
Length = 376
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q +LFSATLS D E +HQL L P + E G D+L
Sbjct: 177 PAKRQNVLFSATLSKDIEHIHQLLLHDPVV---------------VKIEEGEDSLEL--- 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++ S + K L LI+KH M+ VL F ++ +H ++ +
Sbjct: 219 --------ITQTAYIVSEDKKGPFLRSLIKKHRMKQVLVFASS----------IHQVEAI 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K K++ +S R + F+ +I ++VA+D +ARGID++ + VINYE
Sbjct: 261 VNKLQKNKIDAKAFHSKKSQGNRTDSLAHFKFGRIKVLVATDLMARGIDIDGLPYVINYE 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K Y+HRIGRT R G G +++LV+ +E
Sbjct: 321 LPRSPKDYVHRIGRTGRAGNTGEAISLVSHNE 352
>gi|414886235|tpg|DAA62249.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 770
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 337 PKRRQTMLFSATMTEEIDELIKLSLNKPVRL----------EADPS-------------- 372
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + + VL L K + V+ F T Q AHRL +++ +
Sbjct: 373 --LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRL-KIIFGL 429
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ FR++++D ++A+D ARGID+ + VI
Sbjct: 430 SG---------MKAAELHGNLTQAQRLEALELFRKQEVDFLIATDVAARGIDIVGVQTVI 480
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 481 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 512
>gi|114331652|ref|YP_747874.1| DEAD/DEAH box helicase [Nitrosomonas eutropha C91]
gi|114308666|gb|ABI59909.1| DEAD/DEAH box helicase domain protein [Nitrosomonas eutropha C91]
Length = 488
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 108/234 (46%), Gaps = 44/234 (18%)
Query: 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGD 61
R +G L + PS+ Q L+FSAT S + KL L
Sbjct: 166 RMLDMGFLPDIKKVMALLPSQRQSLMFSATFSDEIRKLADGLL----------------- 208
Query: 62 TQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKP----LVLYQLIRKHAMQGVL 117
P E A N ++E ++ +KP +L L+++ ++ L
Sbjct: 209 KHPVRIEVAAQN-------------TINESISHVVHRIKPESKFALLLHLVKQQDLKQAL 255
Query: 118 CFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177
FV T GA +LA++L H K+ ++ D QR + + EF+ + ++
Sbjct: 256 VFVKTKHGASQLAQMLSH----------HKILALAIHGDKNQQQRTQALSEFKHGDVQIL 305
Query: 178 VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VA+D ARGID+E + V+NYE P N + Y+HRIGRT R G +G +++LV+ HE
Sbjct: 306 VATDVAARGIDIEKLSHVVNYELPGNPEDYVHRIGRTGRAGSKGKAISLVSEHE 359
>gi|425446720|ref|ZP_18826721.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
gi|389732942|emb|CCI03221.1| putative RNA helicase [Microcystis aeruginosa PCC 9443]
Length = 479
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYMIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|50311527|ref|XP_455788.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660268|sp|Q6CJV1.1|DRS1_KLULA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49644924|emb|CAG98496.1| KLLA0F15752p [Kluyveromyces lactis]
Length = 748
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 111/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ ++L LSL +P +++P + AD L+ FI
Sbjct: 409 PSKRQTLLFSATMNSKIKQLISLSLKKP--VRIMIDPP----------KQAADKLTQEFI 456
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +LYQLIRK + + ++ FV + AH+L +L +
Sbjct: 457 ------------RIRKRDHLKPALLYQLIRKLDNTSQKRIVVFVARKETAHKLRIVLGLL 504
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M + E++ L +QR + + F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 505 G----------MQVGELHGSLTQEQRLQSVNNFKSLQVPVLICTDLASRGLDIPKIEVVI 554
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
N++ P + Y+HR+GRTAR GR+G SVT V
Sbjct: 555 NFDMPKTYEIYLHRVGRTARAGREGRSVTFV 585
>gi|149235381|ref|XP_001523569.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|152013489|sp|A5E726.1|DBP6_LODEL RecName: Full=ATP-dependent RNA helicase DBP6
gi|146452978|gb|EDK47234.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 663
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 117/223 (52%), Gaps = 30/223 (13%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + + Q+ +FSATL+ D KL L P+L D+Q +E
Sbjct: 410 VYDVANVWSLKVQKFIFSATLTTDAGKLASLDFHNPRLLI-------VNDSQRLVNEL-- 460
Query: 72 DNLSSGFIGKFTTPAELSE-KLT--TCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAH 127
F+ PA LSE KL ++LKPL+L + LI + + VL F + + +
Sbjct: 461 ----------FSVPAMLSEYKLNFGVAKSSLKPLILAKFLIAQEKLSDVLVFTKSNESSI 510
Query: 128 RLARLLHHIDNVATKGAGTK---MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
RL LL I + K MN+ + L R+KI+++F +KI+++VA+D +A
Sbjct: 511 RLCTLLQAIFDRICLQEKVKVGFMNLTNNRTSL----RSKILKDFTSQKINILVATDLIA 566
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
RG+DV +I V+NY+ ++ ++Y+HR+GRTAR + G + LV
Sbjct: 567 RGLDVTSIKDVVNYDLLNSSREYVHRVGRTARANQAGNAYNLV 609
>gi|425461891|ref|ZP_18841365.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443648367|ref|ZP_21129987.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
gi|159030016|emb|CAO90397.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389825195|emb|CCI25254.1| putative RNA helicase [Microcystis aeruginosa PCC 9808]
gi|443335213|gb|ELS49690.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
DIANCHI905]
Length = 479
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYMIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|425442860|ref|ZP_18823096.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|425467451|ref|ZP_18846734.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
gi|389715972|emb|CCH99724.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9717]
gi|389829775|emb|CCI28639.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9809]
Length = 479
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|169844029|ref|XP_001828736.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
gi|116510107|gb|EAU93002.1| ATP-dependent RNA helicase drs1 [Coprinopsis cinerea okayama7#130]
Length = 754
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 111/209 (53%), Gaps = 37/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ ++L ++SL +P +LF P S A G
Sbjct: 351 PKSRQTMLFSATMTDSVDELIKMSLNKPVRLFVD-----------PKRSTA------RGL 393
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I +F + S++ P +L L ++ V+ FV + + AH++ R++ +
Sbjct: 394 IQEFVRIRKESDR---------PAMLVALCKQTYKHKVIIFVRSKKLAHQM-RIVFSL-- 441
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
M AE++ DL +QR + +Q FR +D ++A+D +RG+D++ ++ V+NY
Sbjct: 442 -------LGMKCAELHGDLSQEQRLQALQSFREGSVDYLMATDLASRGLDIKGVETVVNY 494
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P + +Y+HR+GRTAR GR+G SVTLV
Sbjct: 495 DMPGQMAQYLHRVGRTARAGRKGKSVTLV 523
>gi|422302445|ref|ZP_16389808.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|425454118|ref|ZP_18833865.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
gi|389788317|emb|CCI16072.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9806]
gi|389805290|emb|CCI14994.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9807]
Length = 479
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|166365637|ref|YP_001657910.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
gi|166088010|dbj|BAG02718.1| ATP-dependent RNA helicase [Microcystis aeruginosa NIES-843]
Length = 479
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|425436507|ref|ZP_18816943.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|425451380|ref|ZP_18831202.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440752520|ref|ZP_20931723.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
gi|389678768|emb|CCH92412.1| putative RNA helicase [Microcystis aeruginosa PCC 9432]
gi|389767364|emb|CCI07225.1| putative RNA helicase [Microcystis aeruginosa PCC 7941]
gi|440177013|gb|ELP56286.1| DEAD/DEAH box helicase family protein [Microcystis aeruginosa
TAIHU98]
Length = 479
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|448535807|ref|XP_003871022.1| Dbp6 protein [Candida orthopsilosis Co 90-125]
gi|380355378|emb|CCG24896.1| Dbp6 protein [Candida orthopsilosis]
Length = 609
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 112/209 (53%), Gaps = 28/209 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D KL L+ ++P+L DT+ +E F+
Sbjct: 369 QKLVFSATLTTDAGKLSNLNFYKPRLII-------VNDTEQLVNEM------------FS 409
Query: 84 TPAELSEKLT---TCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P+ LSE + +LKPL+L + L + + VL F + + RL++LL I
Sbjct: 410 VPSLLSEFIIHYGVAKNSLKPLILAKFLASQKKLSNVLIFTKSNESCIRLSKLLQLI--- 466
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N+A + S + + R +++++F +KI++++A+D +ARGID+ I VINY
Sbjct: 467 -MDAFSMSINVAFINSTNNRTSVRARVLRDFSTQKINILIATDLIARGIDLTTITDVINY 525
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P++ ++Y+HR+GRTAR G + V
Sbjct: 526 DLPNSSREYVHRVGRTARAKNAGNAYNFV 554
>gi|425471042|ref|ZP_18849902.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
gi|389883157|emb|CCI36432.1| DEAD-box ATP-dependent RNA helicase CshA [Microcystis aeruginosa
PCC 9701]
Length = 479
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|390438620|ref|ZP_10227070.1| putative RNA helicase [Microcystis sp. T1-4]
gi|389837951|emb|CCI31194.1| putative RNA helicase [Microcystis sp. T1-4]
Length = 479
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 83/146 (56%), Gaps = 15/146 (10%)
Query: 85 PAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +K+ T LK VL L+ ++ + FV T Q A L L
Sbjct: 213 PAKIEQKIYLIPRGWTKLK--VLQPLLEIEPLESAIIFVRTKQTAAELTSKLQE------ 264
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
AG + E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VINY+ P
Sbjct: 265 --AG--QTVDEYHGNLSQVQRERLVQRFREGKIKLVVATDIAARGLDVENLSHVINYDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ GT+++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKTGTAISLV 346
>gi|297626176|ref|YP_003687939.1| DEAD/DEAH box helicase [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921941|emb|CBL56501.1| DEAD/DEAH box helicase domain protein [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 501
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 80/128 (62%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP ++ ++++ M+ ++ F T + A RLA D++ +G A ++ DL
Sbjct: 253 KPEMIGKMLQSEGMRKMMVFTRTKRAAQRLA------DDLRDRG----FEAASLHGDLNQ 302
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
QR K ++ FR KI ++VA+D ARGIDV+++ V+NYE PD+ ++Y+HRIGRT R G
Sbjct: 303 SQREKTMKRFRNDKIQVLVATDVAARGIDVDDVTHVVNYEVPDDPEQYVHRIGRTGRAGH 362
Query: 220 QGTSVTLV 227
+G +VTLV
Sbjct: 363 EGVAVTLV 370
>gi|50547515|ref|XP_501227.1| YALI0B22572p [Yarrowia lipolytica]
gi|74660077|sp|Q6CDN5.1|DBP6_YARLI RecName: Full=ATP-dependent RNA helicase DBP6
gi|49647093|emb|CAG83480.1| YALI0B22572p [Yarrowia lipolytica CLIB122]
Length = 607
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 110/206 (53%), Gaps = 30/206 (14%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q L+FSATL+ +PE + + + P +F G+ D+ ++
Sbjct: 386 QTLIFSATLTANPEHIASMDIHNPGVFV-----IGSSDS-------------------YS 421
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID-NVATK 142
P L+E +T S KPL+L +L+ + + + F +++ A R+AR++ +D ++ K
Sbjct: 422 IPKSLTEIVTHVSAAEKPLMLCELLVQRDINRGVVFTKSSETAARVARMMEIMDADIFHK 481
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
IA V ++ R + +++F KID +V +D ++RGID +D VINY+ P
Sbjct: 482 D----WKIAAVSAETSSVHRRRSMKQFIDGKIDFLVCTDLVSRGIDF-VVDNVINYDIPS 536
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
++Y+HR+GRTAR GR+G + T +T
Sbjct: 537 GKREYVHRVGRTARAGREGNAYTFLT 562
>gi|123503211|ref|XP_001328468.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
gi|121911411|gb|EAY16245.1| DEAD/DEAH box helicase family protein [Trichomonas vaginalis G3]
Length = 473
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 8/152 (5%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P L E+ KP +L L + Q +LCFV+T + A LA ++
Sbjct: 233 SRYVIPNHLKEEFIIAERQNKPAILQSLTTR--FQFILCFVSTTKRAVALANIMR----- 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T A T + E + LK D++N+ + + L++ +D+LARGI++ ID VIN++
Sbjct: 286 -TLLAKTDFQVIEFAASLKSDKKNQAFESVDQNSSRLIICTDSLARGINLPYIDAVINFD 344
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP + + YIHRIGRTARGG GT VT + E
Sbjct: 345 APASARTYIHRIGRTARGGNSGTCVTFLLDSE 376
>gi|354548454|emb|CCE45190.1| hypothetical protein CPAR2_702020 [Candida parapsilosis]
Length = 610
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 113/209 (54%), Gaps = 28/209 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D KL L+ ++P+L DTQ +E F+
Sbjct: 370 QKLVFSATLTTDAGKLAILNFYKPRLII-------VNDTQQLVNEM------------FS 410
Query: 84 TPAELSEKLTT---CSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P+ LSE + + +LKPL+L + L+ + + VL F + + RLA+LL I
Sbjct: 411 VPSLLSEFIISYGVAKNSLKPLILAKFLVSQDKLFNVLIFTKSNESCIRLAKLLQLI--- 467
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N+ + S + + R +I+++F +K+++++A+D +ARGID+ I V+NY
Sbjct: 468 -MDALSISINVGFINSTNNRTSIRARILKDFSHQKVNILIATDLIARGIDLTTITDVVNY 526
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P++ ++Y+HR+GRTAR G + V
Sbjct: 527 DLPNSSREYVHRVGRTARAENPGNAYNFV 555
>gi|409051554|gb|EKM61030.1| hypothetical protein PHACADRAFT_24252 [Phanerochaete carnosa
HHB-10118-sp]
Length = 793
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 113/211 (53%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL QP +LF V+P T +
Sbjct: 369 SCPVSRQTMLFSATMTDSVDELVRMSLNQPVRLF---VDPKRT--------------TAR 411
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + +F ++ + + +L L ++ GVL F + + AH++ R++ +
Sbjct: 412 GLLQEFV-------RVRASKEDERSALLVSLCKRTFKGGVLIFFRSKKLAHQM-RIVFGL 463
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +E++ DL +QR + +Q FR +D ++A+D +RG+D++ ID VI
Sbjct: 464 ---------LGMKASELHGDLTQEQRLQALQAFREGSVDYLMATDLASRGLDIKGIDTVI 514
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 515 NYDMPGQVAQYLHRVGRTARAGKKGRSVTLV 545
>gi|241959124|ref|XP_002422281.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223645626|emb|CAX40285.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 605
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 110/203 (54%), Gaps = 28/203 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D KL L + P+L D++ +E FT
Sbjct: 366 QKLVFSATLTTDAGKLSSLKFYNPRLVI-------VNDSKQLVNEI------------FT 406
Query: 84 TPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P LSE L +LKPL+L + LI + + VL F + + + RL LL +
Sbjct: 407 VPMTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLTSL--- 463
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ +N+A + S + + R+KI+++F ++++++V +D +ARGIDV +I VINY
Sbjct: 464 -FQKLSVNLNVAFINSTNNRTSIRSKILKKFSNQEVNILVTTDLIARGIDVASITDVINY 522
Query: 199 EAPDNIKKYIHRIGRTARGGRQG 221
+ P++ ++Y+HR+GRTAR + G
Sbjct: 523 DLPNSSREYVHRVGRTARANQVG 545
>gi|366986679|ref|XP_003673106.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
gi|342298969|emb|CCC66713.1| hypothetical protein NCAS_0A01550 [Naumovozyma castellii CBS 4309]
Length = 748
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 114/211 (54%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT++ ++L LSL +P +++P + A L+ F+
Sbjct: 402 PNKRQTLLFSATMNSKIKQLVSLSLRKP--VRIMIDPP----------KQAASRLTQEFV 449
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LI+K + + ++ FV+ + AHRL +L +
Sbjct: 450 ------------RIRARDHLKPALLFNLIKKLDGYGQKRMVVFVSRKEMAHRLRIILGLL 497
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
MN+AE++ L +QR + + +F+ +I +++ +D +RG+D+ I+VVI
Sbjct: 498 G----------MNVAELHGSLSQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVI 547
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SV+ V
Sbjct: 548 NYDMPKSYEIYLHRVGRTARAGREGRSVSFV 578
>gi|414589947|tpg|DAA40518.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein,
partial [Zea mays]
Length = 786
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 358 PKRRQTMLFSATMTEEIDELVKLSLNKPVRL----------EADPS-------------- 393
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + + VL L K + V+ F T Q AHRL +++ +
Sbjct: 394 --LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRL-KIIFGL 450
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 451 ---------SGMKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVI 501
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 502 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 533
>gi|334130724|ref|ZP_08504514.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
gi|333444124|gb|EGK72080.1| ATP-dependent RNA helicase [Methyloversatilis universalis FAM5]
Length = 480
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 107/216 (49%), Gaps = 42/216 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + +KL Q L P+L V T +T
Sbjct: 180 PTQRQSLLFSATFSEEIKKLAQAMLRDPQLI-EVARRNATAET----------------- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK--HAMQGVLCFVNTAQGAHRLARLLHHID 137
++ ++ C T+ K +L L+ + +A + L FVNT GA RLA HH+
Sbjct: 222 --------ITHRVHACDTDDKRALLTHLLTQDSYADRQALVFVNTKFGASRLA---HHL- 269
Query: 138 NVATKGAGTKMNIAE--VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ +A ++ D QR + ++ F+ + ++VA+D ARG+D+E++ V
Sbjct: 270 --------VRQGVAADAIHGDKSQQQRTEALEAFKNGSVRVLVATDVAARGLDIEDLPFV 321
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IN+E P N + Y+HRIGRT R GR G +++L E
Sbjct: 322 INFELPHNAEDYVHRIGRTGRAGRSGEAISLAAPEE 357
>gi|393218427|gb|EJD03915.1| DEAD-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 782
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 110/209 (52%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q +LFSAT++ D + L ++SL +P KLF P S A G
Sbjct: 362 PTSRQTMLFSATMTDDVDALVRMSLNRPVKLFVD-----------PKRSTA------RGL 404
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I +F ++ + +L L ++ QGV+ F + + AH++ R++ I
Sbjct: 405 IQEFV-------RVRAGKEAERAALLVALCKRTFKQGVIVFFRSKKLAHQM-RVVFGI-- 454
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
M E++ DL +QR + +Q FR +D ++A+D +RG+D++ I+ V+NY
Sbjct: 455 -------LGMKAEELHGDLTQEQRLRALQLFRDGAVDFLMATDLASRGLDIKGIEAVVNY 507
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 508 DMPGQLAQYLHRVGRTARAGKKGRSVTLV 536
>gi|414589946|tpg|DAA40517.1| TPA: putative DEAD-box ATP-dependent RNA helicase family protein
[Zea mays]
Length = 773
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 342 PKRRQTMLFSATMTEEIDELVKLSLNKPVRL----------EADPS-------------- 377
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + + VL L K + V+ F T Q AHRL +++ +
Sbjct: 378 --LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRL-KIIFGL 434
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 435 ---------SGMKAAELHGNLTQAQRLEALELFKKKEVDFLIATDVAARGIDIVGVQTVI 485
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 486 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 517
>gi|319411502|emb|CBQ73546.1| related to DRS1-RNA helicase of the DEAD box family [Sporisorium
reilianum SRZ2]
Length = 932
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 111/224 (49%), Gaps = 46/224 (20%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-------------KLFTSVVEPAGTGDTQPTSSEAG 70
Q +LFSAT++ D E+L +LSL +P KL V G+G AG
Sbjct: 516 QTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLIQEFVRVRGSG----PGGVAG 571
Query: 71 ADNL-------SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
AD L S+ +GK + A+ +P +L L + V+ FV +
Sbjct: 572 ADGLAGVGDEPSTSTVGKRSEDAQ------------RPALLLALCTRTFTSQVIIFVRSK 619
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
+ AH+L + + ++ E++ DL +QR + +FR K+D ++A+D
Sbjct: 620 KLAHQLKIVFGLLG----------LSAGELHGDLSQEQRIDALTDFRDGKVDFLLATDLA 669
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+RG+D++ + VINY+ P + Y+HR+GRTAR GR G +VTLV
Sbjct: 670 SRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLV 713
>gi|387592705|gb|EIJ87729.1| hypothetical protein NEQG_02276 [Nematocida parisii ERTm3]
gi|387595334|gb|EIJ92959.1| hypothetical protein NEPG_02358 [Nematocida parisii ERTm1]
Length = 427
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 84/147 (57%), Gaps = 10/147 (6%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P +S++ K + LY +IR + + FV T A ++ R+L +D
Sbjct: 216 PENISQQYVYLPQKYKEVYLYSIIRSLGSRKCIVFVKTCITAEKIERMLRSLDE------ 269
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
++ ++ + + R + I+ FRR + +++++D +ARG+D+E I ++INY+ PD
Sbjct: 270 ----SVCSIHGNKSQEVRTETIEMFRRGRYSVLISTDVVARGMDMEGIKIIINYDMPDGH 325
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K+YIHRIGRT R G G+S+TLVT ++
Sbjct: 326 KEYIHRIGRTGRAGETGSSITLVTQYD 352
>gi|242045284|ref|XP_002460513.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
gi|241923890|gb|EER97034.1| hypothetical protein SORBIDRAFT_02g029690 [Sorghum bicolor]
Length = 760
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 110/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 360 PKRRQTMLFSATMTEEIDELIKLSLNKPVRL----------EADPS-------------- 395
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + + VL L K + V+ F T Q AHRL +++ +
Sbjct: 396 --LKRPATLTEEVVRIRRARESNQEAVLLALCLKTFKRSVIIFSGTKQSAHRL-KIVFGL 452
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 453 ---------SGMKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVI 503
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 504 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 535
>gi|258648442|ref|ZP_05735911.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
gi|260851194|gb|EEX71063.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
tannerae ATCC 51259]
Length = 484
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 11/147 (7%)
Query: 82 FTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+ PAE + + L C N K ++ L + V+ F + Q L N+
Sbjct: 218 ISKPAENIRQSLFICKENDKTAIIKHLFADQKPERVIIFCGSKQKVKEL--------NIT 269
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
K G N+ ++SDL+ QR++++ F+ +ID++VA+D +ARGID+++I +VINY+
Sbjct: 270 LKRKG--YNVEAMHSDLEQKQRDEVMLGFKAGRIDILVATDIVARGIDIDDITLVINYDV 327
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + + Y+HRIGRTAR GR G +VTLV
Sbjct: 328 PRDAEDYVHRIGRTARAGRNGRAVTLV 354
>gi|198274601|ref|ZP_03207133.1| hypothetical protein BACPLE_00753 [Bacteroides plebeius DSM 17135]
gi|198272048|gb|EDY96317.1| DEAD/DEAH box helicase [Bacteroides plebeius DSM 17135]
Length = 424
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ L + + V+ F ++ + + L +
Sbjct: 213 SKPAEKIIQAAYICYEAQKLGIIQSLFQSQQPERVIIFASSKLKVKEVTKALKRM----- 267
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N+ E++SDL+ QR +I+ EFR R+ID++VA+D +ARGID+++I +VINY+ P
Sbjct: 268 -----KLNVGEMHSDLEQSQREEIMHEFRNRRIDILVATDIVARGIDIDDIRLVINYDVP 322
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR G ++T V+ E
Sbjct: 323 HDSEDYVHRIGRTARANNDGCAITFVSETE 352
>gi|340372235|ref|XP_003384650.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Amphimedon queenslandica]
Length = 598
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 108/209 (51%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q LLFSAT++ + E+L +LSL P ++F S+ ADNL F
Sbjct: 320 PVSRQTLLFSATMTDEVEELARLSLHNPVRVFVD-------------SNTDTADNLHQEF 366
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ ++ + + ++ L + L FV T + AHR RL+ +
Sbjct: 367 V-----------RIRSNKEADREAIVSALCLRSFKDHCLVFVPTKKQAHR-QRLILGLLG 414
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ T +E++ L QR + ++ F+ ++D+++A+D ARG+D+EN+ VINY
Sbjct: 415 IKT---------SELHGSLTQLQRLEALKGFKEAEVDILIATDLAARGLDIENVRTVINY 465
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
P +K+YIHR+GRTAR G+ G SVTLV
Sbjct: 466 SMPPTVKQYIHRVGRTARAGKSGKSVTLV 494
>gi|344232268|gb|EGV64147.1| hypothetical protein CANTEDRAFT_122357 [Candida tenuis ATCC 10573]
Length = 563
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 116/215 (53%), Gaps = 28/215 (13%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ R Q+L+FSATL+ D KL L ++P+L D + +E
Sbjct: 321 SWKLRVQKLVFSATLTTDAGKLAMLHFYKPRLVI-------VNDEEKLVNEM-------- 365
Query: 78 FIGKFTTPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLL 133
F+TP LSE + ++ ++LKPL+L + L++ + + VL F + + + RL++LL
Sbjct: 366 ----FSTPRTLSEFTLQFSSNKSSLKPLILAKFLMKSNKLSNVLVFTKSNEASIRLSKLL 421
Query: 134 HHIDNVATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
++ G G M + + S + R K++ F +++++V +D +ARGIDV +I
Sbjct: 422 ----SLVFDGFGVSMVVEYLNSTNNSTMARKKLLMAFDSGQVNVLVVTDLIARGIDVLSI 477
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
V+NY+ P++ ++Y+HR+GRTAR G + V
Sbjct: 478 TDVVNYDMPNSSREYVHRVGRTARANNDGRAYNFV 512
>gi|307168298|gb|EFN61504.1| Probable ATP-dependent RNA helicase Dbp73D [Camponotus floridanus]
Length = 581
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 19/154 (12%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATLS DPEKL L LFQP LFT+VV T + D ++ FIG++T
Sbjct: 399 QKLLFSATLSQDPEKLSWLGLFQPILFTTVVTDKDT--------DVNLDKIAGDFIGRYT 450
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+P EL+E C+ KP+ LYQL+ +H + L F N+ HRLA L+ +
Sbjct: 451 SPGELTELAMECNVEYKPVALYQLLTRHDTISKTLVFTNSGHTTHRLALLMQSL------ 504
Query: 143 GAGTKMNIA--EVYSDLKFDQRNKIIQEFRRRKI 174
+K N+A E+ + L QR ++ F +I
Sbjct: 505 --LSKRNVAVGELSAQLAPKQRESVLGRFASAEI 536
>gi|429726891|ref|ZP_19261676.1| DEAD/DEAH box helicase [Prevotella sp. oral taxon 473 str. F0040]
gi|429145331|gb|EKX88421.1| DEAD/DEAH box helicase [Prevotella sp. oral taxon 473 str. F0040]
Length = 561
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 90/146 (61%), Gaps = 11/146 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + + C + K +L + + + V+ FV++ Q L NV
Sbjct: 309 SKPAEKIDQSVYVCRDSDKTPILKHIFTEQPPERVIVFVSSKQRVKEL--------NVIL 360
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K G N A ++SDL +R+ ++ F++R ID+++A+D ++RGID+++I +VINY+AP
Sbjct: 361 KRKG--YNCAAMHSDLDQAERDVVMLGFKQRNIDMLIATDIVSRGIDIDDIQMVINYDAP 418
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
+ + Y+HRIGRTAR GR+G ++TL+
Sbjct: 419 RDPEDYVHRIGRTARAGREGRAITLI 444
>gi|339482299|ref|YP_004694085.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
Is79A3]
gi|338804444|gb|AEJ00686.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. Is79A3]
Length = 493
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL L P L E N S I
Sbjct: 180 PEKRQNLMFSATFSEEIKKLASKILKNPVLI-----------------EVAKQNSVSELI 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P + T K +L LI++ + VL F T QGA L + L+H
Sbjct: 223 THVVHPVD---------TTRKQELLISLIKRQKLHQVLVFTRTKQGADHLTKWLNH---- 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ A ++ D QR + + F++ I ++VA+D ARG+D+E + VIN+E
Sbjct: 270 ------SGISSAAIHGDRNQLQRTQALTNFKQSLIPVLVATDVAARGLDIEELTHVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+N + Y+HRIGRT R G +G +++LV+ E
Sbjct: 324 LPNNPEDYVHRIGRTGRAGTKGFAISLVSQEE 355
>gi|325297782|ref|YP_004257699.1| DEAD/DEAH box helicase [Bacteroides salanitronis DSM 18170]
gi|324317335|gb|ADY35226.1| DEAD/DEAH box helicase domain protein [Bacteroides salanitronis DSM
18170]
Length = 418
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 112/213 (52%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVV-EPAGTGDTQPTSSEAGADNLSSGF 78
P Q ++FSAT+ P K+ QL+ S++ +PA + + S+ + + +
Sbjct: 178 PKERQTIMFSATM---PAKIQQLA-------QSILHDPA---EVKLAVSKPADKIIQAAY 224
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I C K ++ L R+ + V+ F ++ + + L +
Sbjct: 225 I---------------CYEAQKLGIIESLFRQQEPERVIIFASSKLKVKEVTKALKRL-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR++I+ EFR +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQSQRDEIMHEFRNGRINMLVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ +E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGCAITFVSENE 352
>gi|238880181|gb|EEQ43819.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 606
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D KL L + P+L D++ +E FT
Sbjct: 367 QKLVFSATLTTDAGKLSSLKFYNPRLII-------VNDSKQLVNEI------------FT 407
Query: 84 TPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P LSE L +LKPL+L + LI + + VL F + + + RL LL +
Sbjct: 408 VPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLTSL--- 464
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ + IA + S + + R+KI+++F +++++++ +D +ARGIDV +I VINY
Sbjct: 465 -FQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVASITDVINY 523
Query: 199 EAPDNIKKYIHRIGRTARGGRQG 221
+ P++ ++Y+HR+GRTAR + G
Sbjct: 524 DLPNSSREYVHRVGRTARANQVG 546
>gi|170579441|ref|XP_001894832.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598430|gb|EDP36322.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 378
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 41/230 (17%)
Query: 7 GGLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G I T LT+ P + Q LLFSAT++ +LHQ+S+ +P F E A
Sbjct: 80 GQYSIELKTILTFLPKQRQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIA-------- 131
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVN 121
T +L +K C +K L +++ KH +L F +
Sbjct: 132 ------------------TVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLILIFSH 173
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + LA + H G + ++S + +R + +FR +I +++ +D
Sbjct: 174 TCRECQALAIMFH----------GLGFKVGSLHSQISQQERTSSLTKFRSGRIKILICTD 223
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+D+ ++D+V+N+ P N K YIHR+GR+AR GR G ++ VT ++
Sbjct: 224 VASRGLDIPHVDLVVNHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYD 273
>gi|255079330|ref|XP_002503245.1| predicted protein [Micromonas sp. RCC299]
gi|226518511|gb|ACO64503.1| predicted protein [Micromonas sp. RCC299]
Length = 605
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 105/211 (49%), Gaps = 39/211 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSATL+ E+L + S+ P LS+ I
Sbjct: 326 PKRRQTMLFSATLTSGVEELAEFSMKNPA------------------------RLSADQI 361
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G TTP L+E +L + +K L ++ + + + F T Q AHRL +++ I
Sbjct: 362 G--TTPGTLTEEVLRLRPGAAAMKEAHLLAIVARTFTKRCIIFSRTKQQAHRL-KIIMGI 418
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ E++ DL QR ++EFR + +VA+D ARG+D+ +D V+
Sbjct: 419 HG---------LKACELHGDLTQTQRLAALEEFRTGEATHMVATDVAARGLDIAGVDAVV 469
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+Y+AP + Y+HR+GRTAR GR+GT++T +
Sbjct: 470 SYDAPRTLASYLHRVGRTARAGRKGTALTFM 500
>gi|68490215|ref|XP_711056.1| hypothetical protein CaO19.11188 [Candida albicans SC5314]
gi|68490244|ref|XP_711043.1| hypothetical protein CaO19.3704 [Candida albicans SC5314]
gi|74656092|sp|Q59MW2.1|DBP6_CANAL RecName: Full=ATP-dependent RNA helicase DBP6
gi|46432316|gb|EAK91804.1| hypothetical protein CaO19.3704 [Candida albicans SC5314]
gi|46432330|gb|EAK91817.1| hypothetical protein CaO19.11188 [Candida albicans SC5314]
Length = 606
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 109/203 (53%), Gaps = 28/203 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+L+FSATL+ D KL L + P+L D++ +E FT
Sbjct: 367 QKLVFSATLTTDAGKLSSLKFYNPRLII-------VNDSKQLVNEI------------FT 407
Query: 84 TPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P LSE L +LKPL+L + LI + + VL F + + + RL LL +
Sbjct: 408 VPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLISL--- 464
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ + IA + S + + R+KI+++F +++++++ +D +ARGIDV +I VINY
Sbjct: 465 -FQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVASITDVINY 523
Query: 199 EAPDNIKKYIHRIGRTARGGRQG 221
+ P++ ++Y+HR+GRTAR + G
Sbjct: 524 DLPNSSREYVHRVGRTARANQVG 546
>gi|330803884|ref|XP_003289931.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
gi|325079973|gb|EGC33549.1| hypothetical protein DICPUDRAFT_154383 [Dictyostelium purpureum]
Length = 501
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 40/218 (18%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+L P++ Q LLFSAT++++ +KL +SL P +F DN
Sbjct: 175 YLPPPTQRQTLLFSATMTNNLKKLESISLNSPFIF--------------------EDN-- 212
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
K+ T L ++ K L L++KH Q V+ F+N
Sbjct: 213 ----SKYDTVDTLKQEYIYMPAQAKDCYLVYLLKKHIGQSVIVFINNCYSVE-------- 260
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKI--IQEFRRRKIDLVVASDNLARGIDVENID 193
A KG K++I V DQ+ ++ ++ F+ K+ +++A+D +RG+D+ +++
Sbjct: 261 ----AVKGMLNKLDIPAVSLHSFLDQKARLSALKVFKSGKVKVLIATDVASRGLDIPDVE 316
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+VINY+ ++ K YIHR+GRTAR G+ G +++ +T H+
Sbjct: 317 MVINYKLSNSSKDYIHRVGRTARFGKSGRAISFITPHD 354
>gi|384254028|gb|EIE27502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coccomyxa subellipsoidea C-169]
Length = 562
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 21/213 (9%)
Query: 23 PQR----LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
PQR ++ SATL+ DP K+ +L L P+ G D + A +L S
Sbjct: 319 PQRHVLKIVASATLTRDPSKIERLGLNCPRYIA-----LGASDHR----HATILHLLS-H 368
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ P L E C+ KP++ L+R+ A + L F + + RL LLH + +
Sbjct: 369 AREYAMPKSLKEFKVVCAGADKPVLAVALLRQLANEPTLIFTASVEATRRLFVLLHAVPS 428
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ + ++ E S +R + FR ++VASD + RG+DV ++ V+NY
Sbjct: 429 L-------RESVLEFSSLNSGPERAATLAAFRGGDARILVASDGMTRGMDVPSVANVVNY 481
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+AP K Y+HR GRTARGGR+G TL+ T E
Sbjct: 482 DAPIYAKTYVHRAGRTARGGREGRVFTLLRTEE 514
>gi|256821317|ref|YP_003145280.1| DEAD/DEAH box helicase [Kangiella koreensis DSM 16069]
gi|256794856|gb|ACV25512.1| DEAD/DEAH box helicase domain protein [Kangiella koreensis DSM
16069]
Length = 434
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + + Q L P L +T+ T+
Sbjct: 176 PKKRQTLLFSATFSESIKAISQQFLTNPSLV----------ETEQTN------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A + + + KP +L LI H +L FV T +GA++L+ L
Sbjct: 213 ---TTAATVKQWIHPVDKKQKPALLSYLIGHHRWDQLLVFVRTRRGANKLSVDLEKRGIK 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT G K A RN+ + EF+ K+ ++VA+D ARG+D+E + +VINY+
Sbjct: 270 ATAIHGGKSQGA----------RNRALSEFKSGKVTVLVATDVAARGLDIEQMPLVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +GT+++LV+ E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGEKGTAISLVSADE 351
>gi|302795308|ref|XP_002979417.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
gi|300152665|gb|EFJ19306.1| hypothetical protein SELMODRAFT_110816 [Selaginella moellendorffii]
Length = 749
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 108/212 (50%), Gaps = 33/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PSR Q +LFSAT++ + +L +LSL P + A +P++ + +G
Sbjct: 292 PSRRQTMLFSATMTDEVSELIKLSLKSPVRLS-----ADPSTERPSTLTEEVIRIRAGHE 346
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
G L+ CS +LK + F T AHRL ++L + +
Sbjct: 347 GDKEAIV-----LSLCSRSLK-------------SKTIIFSGTKVEAHRL-KILFGLSGL 387
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ AE++ +L QR + ++ FR++++D ++A+D ARG+D+ ++ VIN E
Sbjct: 388 KS---------AELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVINLE 438
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P IK Y+HR+GRTAR GR G SVTL+T +
Sbjct: 439 CPKEIKTYVHRVGRTARAGRHGRSVTLMTEQD 470
>gi|254425310|ref|ZP_05039028.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
gi|196192799|gb|EDX87763.1| DEAD/DEAH box helicase domain protein [Synechococcus sp. PCC 7335]
Length = 471
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 103/201 (51%), Gaps = 21/201 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
LSH P++ Q F++ +EPA Q S+ ++ K ++ A + +
Sbjct: 170 LSHTPDER------QTAFFSATMEPA----IQKLSTRFLKSPVTVSVEAKTSSTARIKQI 219
Query: 92 LTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNI 150
T KP L ++ + + FV T + A L R L + AG +
Sbjct: 220 AYTVPPGWSKPRALMPILEMEDPESAIIFVRTRRTAAELTRQL--------QAAGHSAD- 270
Query: 151 AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHR 210
E + DL QR +++Q F++R++ VVA+D ARGI V+++ VINYE PDN+ Y+HR
Sbjct: 271 -EYHGDLTQPQRERLLQRFKQRQVRWVVATDIAARGIHVDDLSHVINYELPDNLDSYVHR 329
Query: 211 IGRTARGGRQGTSVTLVTTHE 231
IGRT R G++G +V++V T E
Sbjct: 330 IGRTGRAGKEGRAVSIVMTLE 350
>gi|410672237|ref|YP_006924608.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
gi|409171365|gb|AFV25240.1| DEAD/DEAH box helicase domain-containing protein [Methanolobus
psychrophilus R15]
Length = 431
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 12/133 (9%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAE-VYSDLK 158
KP VL +LI + ++ L F NT + L +D + T+G +A+ ++ D+K
Sbjct: 229 KPEVLCRLIDIYDVKSSLVFCNTKRAVDEL------VDTLKTRGY-----LADGLHGDMK 277
Query: 159 FDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
QR +++ FR+ I+ +VA+D ARGIDVENI+VV N++ P + + Y+HRIGRT R G
Sbjct: 278 QQQRERVMASFRKGDIETLVATDVAARGIDVENIEVVFNFDLPQDEESYVHRIGRTGRAG 337
Query: 219 RQGTSVTLVTTHE 231
RQG + T VT E
Sbjct: 338 RQGRAFTFVTGRE 350
>gi|303283946|ref|XP_003061264.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457615|gb|EEH54914.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 809
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 39/211 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+R Q +LFSATL+ ++L + S+ P LS+ I
Sbjct: 354 PTRRQTMLFSATLTSGVQELAEFSMKHPA------------------------RLSADQI 389
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G TTP L+E +L + ++K L L+ + + + F T Q AHRL ++
Sbjct: 390 G--TTPGTLTEEVLRLRPGAASMKEAHLMALVNRTFTKKSIVFSRTKQQAHRLKIVMGLA 447
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
VA AE++ DL QR ++ FR + +VA+D ARG+D+ +D VI
Sbjct: 448 GIVA----------AELHGDLSQTQRLAALESFRVGEASHLVATDVAARGLDIAGVDAVI 497
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+Y+AP + Y+HR+GRTAR G++GT++T +
Sbjct: 498 SYDAPRTLASYLHRVGRTARAGKRGTALTFM 528
>gi|375107400|ref|ZP_09753661.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
gi|374668131|gb|EHR72916.1| DNA/RNA helicase, superfamily II [Burkholderiales bacterium
JOSHI_001]
Length = 492
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 37/222 (16%)
Query: 8 GLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G + L+Y P + Q LLFSAT S + ++L S Q + V P T
Sbjct: 189 GFLPDLQRILSYLPRQRQTLLFSATFSPEIKRLAN-SYLQDPVLVEVARPNATA------ 241
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
+ ++ + + + K V+ QL+R ++ + FVN+ GA
Sbjct: 242 -------------------TNVEQRFYSVTDDDKRRVVMQLLRNRSLSQAIVFVNSKLGA 282
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
RLAR D + T ++ D D+R K + F+R ++L+VA+D ARG
Sbjct: 283 ARLARSFER-DGLKTSA---------LHGDKSQDERLKSLDAFKRGDVELLVATDVAARG 332
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+D+ ++ V N++ P N + Y+HRIGRT R G G +VTLVT
Sbjct: 333 LDIADLPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVT 374
>gi|402591826|gb|EJW85755.1| Ddx49 protein [Wuchereria bancrofti]
Length = 461
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 41/230 (17%)
Query: 7 GGLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G + T LT+ P + Q LLFSAT++ +LHQ+S+ +P F E A
Sbjct: 205 GQYSVELKTILTFLPKQRQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIA-------- 256
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVN 121
T +L +K C +K L +++ KH +L F +
Sbjct: 257 ------------------TVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPESLILIFSH 298
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + LA + H G + ++S + +R + +FR +I +++ +D
Sbjct: 299 TCRECQALAIMFH----------GLGFKVGSLHSQISQQERTSSLTKFRSGRIKILICTD 348
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+D+ ++D+V+N+ P N K YIHR+GR+AR GR G ++ VT ++
Sbjct: 349 VASRGLDIPHVDLVVNHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYD 398
>gi|406986526|gb|EKE07099.1| hypothetical protein ACD_18C00189G0005 [uncultured bacterium]
Length = 451
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 109/227 (48%), Gaps = 38/227 (16%)
Query: 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQL-SLFQPKLFTSVVEPAGTGDTQP 64
VG L + F P Q +LFSAT+ P + L S F + P GT
Sbjct: 182 VGFLPQIRRIFKLAPVNRQTMLFSATM---PPSISSLASAFMKMPLRIEIAPQGTS---- 234
Query: 65 TSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQ 124
A+N+ +++ S K +LY L++ + VL F T
Sbjct: 235 ------AENVE--------------QEVFIISKPDKMRLLYSLLKTYKDDTVLIFSRTKH 274
Query: 125 GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
GA R+AR ++ + + AT E++S+ QR ++ F R + ++VA+D A
Sbjct: 275 GAKRIARDINTVGHSAT----------EIHSNRTQGQRKASLEGFSRGRFRIMVATDIAA 324
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
RGIDV+ I +VIN++ PDN + Y+HRIGRT R GR G +++ VT E
Sbjct: 325 RGIDVKQISLVINFDLPDNSEDYVHRIGRTGRAGRSGKAISFVTPSE 371
>gi|374851722|dbj|BAL54673.1| ATP-dependent RNA helicase RhlE [uncultured candidate division OP1
bacterium]
gi|374855485|dbj|BAL58341.1| ATP-dependent RNA helicase RhlE [uncultured candidate division OP1
bacterium]
Length = 391
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+ + E + L P + + +
Sbjct: 160 PKARQSLLFSATMPPEIESFARRILTNPVIVS---------------------------V 192
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
G TP E +S+ L +LK +L +L+ VL F+ T +GAH+LAR LH +
Sbjct: 193 GPRATPVEGVSQFLYPVPKHLKFALLKRLLEITPHTSVLIFMRTKRGAHKLARALHQEGH 252
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ +++ D QR+ + FR R+ ++VA+D ARG+D+ENI VINY
Sbjct: 253 ----------RVTQIHGDRTQSQRSAALHGFRTRQYSILVATDIAARGLDIENISHVINY 302
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + YIHRIGRTAR G + TL + E
Sbjct: 303 DVPARPEDYIHRIGRTARASAIGDAFTLCSPEE 335
>gi|45184660|ref|NP_982378.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|74695973|sp|Q75F95.1|DRS1_ASHGO RecName: Full=ATP-dependent RNA helicase DRS1
gi|44980006|gb|AAS50202.1| AAL164Cp [Ashbya gossypii ATCC 10895]
gi|374105576|gb|AEY94487.1| FAAL164Cp [Ashbya gossypii FDAG1]
Length = 734
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 111/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ ++L LSL +P +++P + A+ L+ F+
Sbjct: 395 PSKRQTLLFSATMNSRIKQLISLSLKKP--VRIMIDP----------PKQAANKLTQEFV 442
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
L ++ +LKP +LY L+RK G ++ FV + AHRL +L +
Sbjct: 443 -------RLRKR-----EHLKPALLYHLLRKLDSTGQKRIVVFVARKEVAHRLRVILGLL 490
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M E++ L +QR + + F+ + ++V +D +RG+D+ I+VVI
Sbjct: 491 G----------MKAGELHGSLTQEQRLQSVNNFKSLDVPVLVCTDLASRGLDIPKIEVVI 540
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + Y+HR+GRTAR GR+G SVTLV
Sbjct: 541 NYDMPKTYEIYLHRVGRTARAGREGKSVTLV 571
>gi|345563939|gb|EGX46922.1| hypothetical protein AOL_s00097g348 [Arthrobotrys oligospora ATCC
24927]
Length = 668
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 111/217 (51%), Gaps = 10/217 (4%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS--GFIGK 81
++++ SAT++ D +L L L +P+L +V + G S G D ++ G
Sbjct: 404 RKVILSATMTRDVGRLAGLKLRRPQLI-AVDDIGGQEMAIDGSDNDGEDQETADKGLREL 462
Query: 82 FTTPAELSEKLTTCST-NLKPLVLYQLIR-KHAMQGVLCFVNTAQGAHRLARLLH----- 134
+ P+ L E S KPL+L +L+ G+L F + + A RLARLL
Sbjct: 463 NSLPSTLEEHYYPVSNPTQKPLILAKLLSDSQTKSGILVFTKSNESASRLARLLELLFAK 522
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ +G IA SD + + + +F+ ID+++++D + RG+D+ N +
Sbjct: 523 KLGKKRKGSSGKDWRIAVSTSDKRKKEISANTSKFKASTIDILISTDLMGRGVDLPNAQL 582
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY++P N K YIHR+GRTAR G +G + +LV E
Sbjct: 583 VINYDSPRNEKDYIHRVGRTARAGNKGITWSLVEDSE 619
>gi|367014751|ref|XP_003681875.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
gi|359749536|emb|CCE92664.1| hypothetical protein TDEL_0E04210 [Torulaspora delbrueckii]
Length = 740
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 112/211 (53%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ ++L L+L +P +++P + A L+ F+
Sbjct: 395 PSKRQTLLFSATMNSKIKQLVSLTLKRP--VRVMIDPP----------KQAASKLTQEFV 442
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP VL+ LI+K G ++ FV + AHRL +L +
Sbjct: 443 ------------RIRKRDHLKPSVLFHLIKKLDGTGQKRMVVFVARKEMAHRLRIILGLL 490
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+++ E++ L +QR + + +F+ ++ ++V +D +RG+D+ I+VVI
Sbjct: 491 G----------ISVGELHGSLSQEQRLQSVNQFKSLEVPILVCTDLASRGLDIPKIEVVI 540
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P N + Y+HR+GRTAR GR+G SV+LV
Sbjct: 541 NYDMPKNYEVYLHRVGRTARAGREGRSVSLV 571
>gi|387133384|ref|YP_006299356.1| DEAD/DEAH box helicase [Prevotella intermedia 17]
gi|386376232|gb|AFJ08050.1| DEAD/DEAH box helicase [Prevotella intermedia 17]
Length = 579
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E+L Q L P + V
Sbjct: 179 PKTCQTIMFSATMPQKIEELAQTLLNNPSVIKLAV------------------------- 213
Query: 80 GKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE ++ C K ++ + + ++Q V+ F + Q ++A L+
Sbjct: 214 ---SKPAEKIRQIAYVCHEAQKMEIVKDIFKSGSLQRVIIFSGSKQKVKQIALSLNQ--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N +++SDL QR++++ +F+ +ID++VA+D LARGID+++I +VINY
Sbjct: 268 -------KKINCGQMHSDLDQAQRDEMMFKFKSGQIDVLVATDILARGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++T V +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGVAITFVNEDD 353
>gi|220904989|ref|YP_002480301.1| DEAD/DEAH box helicase [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869288|gb|ACL49623.1| DEAD/DEAH box helicase domain protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 595
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ QR+LFSAT+ +L + L +P++ T +
Sbjct: 174 PASCQRVLFSATVPPAIRELSKRFLREPEMLTVAQK------------------------ 209
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T PA + + + K L +L+ A L F +T +GA D V
Sbjct: 210 -MLTVPA-IEQIYYEVRPHQKMDALCRLLDSRAFHKALVFCSTKRGA----------DEV 257
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T ++ +L QR++++Q FR +D++VA+D ARG+DV+++D VINY+
Sbjct: 258 TTHLQQRGYQSDSLHGNLAQSQRDRVMQRFRAEGLDVLVATDVAARGLDVDDVDAVINYD 317
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KY+HRIGRT R GR G++ T VT E
Sbjct: 318 IPHDVEKYVHRIGRTGRAGRVGSAFTFVTMRE 349
>gi|164660112|ref|XP_001731179.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
gi|159105079|gb|EDP43965.1| hypothetical protein MGL_1362 [Malassezia globosa CBS 7966]
Length = 638
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 24/209 (11%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P + Q +LFSAT++ D ++L +LSL P +LF V+P + A L+ F
Sbjct: 254 PKQRQTMLFSATMTEDVDQLVRLSLRTPVRLF---VDP----------KRSTASKLTQEF 300
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ + +L L + V+ FV + + AH+L L +
Sbjct: 301 VRVRAQSRLTGHARQQAEDQHRAAILVTLCMRTFRDQVIIFVRSKKLAHQLKILFGLLG- 359
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
++ AE++ DL +QR + + FR K+D ++A+D +RGID+ + VINY
Sbjct: 360 ---------LSAAELHGDLSQEQRLQSLSLFRDGKVDFLLATDLASRGIDIRGVQTVINY 410
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P ++ Y+HR+GRTAR GRQG +VTLV
Sbjct: 411 DMPAQLEPYLHRVGRTARAGRQGRAVTLV 439
>gi|393910350|gb|EFO27145.2| Ddx49-A-prov protein [Loa loa]
Length = 509
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 41/230 (17%)
Query: 7 GGLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G I T L + P + Q LLFSAT++ +LHQ+S+ +P F E A
Sbjct: 204 GQYSIELKTILNFLPKQRQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIA-------- 255
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVN 121
T +L +K C +K L +++ KH +L F +
Sbjct: 256 ------------------TVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPDSLILIFSH 297
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + LA + H G + ++S + +R + +FR +I +++ +D
Sbjct: 298 TCRECQALAIMFH----------GLGFQVGSLHSQISQQERTSSLTKFRSGRIKILICTD 347
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+D+ ++D+VIN+ P N K YIHR+GR+AR GR G ++ VT ++
Sbjct: 348 VASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYD 397
>gi|302792278|ref|XP_002977905.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
gi|300154608|gb|EFJ21243.1| hypothetical protein SELMODRAFT_107914 [Selaginella moellendorffii]
Length = 741
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 37/214 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTS--VVEPAGTGDTQPTSSEAGADNLSSG 77
PSR Q +LFSAT++ + +L +LSL P ++ E T + AG +
Sbjct: 290 PSRRQTMLFSATMTDEVSELIKLSLKSPVRLSADPSTERPSTLTEEVIRIRAGHEEDKEA 349
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ L+ CS +LK + F T AHRL ++L +
Sbjct: 350 IV------------LSLCSRSLK-------------SKTIIFSGTKVEAHRL-KILFGLS 383
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ + AE++ +L QR + ++ FR++++D ++A+D ARG+D+ ++ VIN
Sbjct: 384 GLKS---------AELHGNLTQAQRLEALEAFRKQEVDFLIATDVAARGLDIIGVESVIN 434
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
E P IK Y+HR+GRTAR GR G SVTL+T +
Sbjct: 435 LECPKEIKTYVHRVGRTARAGRHGRSVTLMTEQD 468
>gi|312067818|ref|XP_003136922.1| Ddx49-A-prov protein [Loa loa]
Length = 478
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 107/230 (46%), Gaps = 41/230 (17%)
Query: 7 GGLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G I T L + P + Q LLFSAT++ +LHQ+S+ +P F E A
Sbjct: 204 GQYSIELKTILNFLPKQRQTLLFSATITSALSQLHQVSVKKPYFFEDKSEIA-------- 255
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVN 121
T +L +K C +K L +++ KH +L F +
Sbjct: 256 ------------------TVDKLEQKYVLCPCAVKDAYLVYVVKNFHEKHPDSLILIFSH 297
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + LA + H G + ++S + +R + +FR +I +++ +D
Sbjct: 298 TCRECQALAIMFH----------GLGFQVGSLHSQISQQERTSSLTKFRSGRIKILICTD 347
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+D+ ++D+VIN+ P N K YIHR+GR+AR GR G ++ VT ++
Sbjct: 348 VASRGLDIPHVDLVINHNVPQNPKTYIHRVGRSARAGRFGCALLFVTQYD 397
>gi|223992625|ref|XP_002285996.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977311|gb|EED95637.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 495
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 23/208 (11%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT+S + L +LSL QP + + G D PT E A L F+
Sbjct: 193 PTERQTLLFSATMSTKVDDLIKLSLKQPVRVQATEK--GKKDNAPTGVEV-APRLEQEFV 249
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ E N + ++L L R + V+ F +T AHRL +
Sbjct: 250 -RIRAGNE--------GVNREGMLLALLTRTFTSR-VIVFFDTKSAAHRLM--------I 291
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G K E++ +L QR + ++ FR +D+++A+D ARG+D+ ++ VIN+E
Sbjct: 292 VCGLCGIKCT--ELHGNLTQVQRLEALEAFREGNVDVLLATDLAARGLDIPGVECVINFE 349
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + Y+HRIGRTAR GR G S TL+
Sbjct: 350 MPSQVDTYVHRIGRTARAGRGGNSCTLI 377
>gi|224083077|ref|XP_002306942.1| predicted protein [Populus trichocarpa]
gi|222856391|gb|EEE93938.1| predicted protein [Populus trichocarpa]
Length = 744
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 109/215 (50%), Gaps = 39/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + + L +LSL +P ++ +P+
Sbjct: 311 PKRRQTMLFSATMTEEVDMLIKLSLTKPLRLSA--DPSAK-------------------- 348
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E +L + VL L K + F T Q AHRL ++L +
Sbjct: 349 ----RPAALTEEVLRLRRMREVNQEAVLLALCSKTFTSKAIIFSGTKQAAHRL-KILFGL 403
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + VI
Sbjct: 404 -------AGFKA--AELHGNLTQAQRLDALELFRKQEVDFLIATDVAARGLDIIGVQTVI 454
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY P ++ YIHR+GRTAR GR+G +VT VT ++
Sbjct: 455 NYACPRDLTSYIHRVGRTARAGREGYAVTFVTDND 489
>gi|195997819|ref|XP_002108778.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
gi|190589554|gb|EDV29576.1| hypothetical protein TRIADDRAFT_52102 [Trichoplax adhaerens]
Length = 625
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 87/167 (52%), Gaps = 24/167 (14%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+LLFSATL++DPEKL L LF P L+ D + NLS+ I +
Sbjct: 414 QKLLFSATLTYDPEKLAPLELFSPLLYQ-------ISDQK--------SNLSTNEIDYYV 458
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TPAEL+E C KPL + ++ VLCF N+ + RL+ LL ++
Sbjct: 459 TPAELTEYYIICEPGEKPLTIIHFMQALKHLRVLCFTNSKESTKRLSLLLSIFGDI---- 514
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+A + S++ R +II++F +IDL++ SD +ARGID+E
Sbjct: 515 -----RVATLSSEVPRKDRKRIIKQFSSGEIDLLICSDTVARGIDIE 556
>gi|357152627|ref|XP_003576182.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 1
[Brachypodium distachyon]
Length = 780
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 350 PKRRQTMLFSATMTEEIDELVKLSLNKPVRL----------EADPS-------------- 385
Query: 80 GKFTTPAELSEKLTTCSTNL---KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E++ + + VL L K + V+ F T AHRL +++ +
Sbjct: 386 --LKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRL-KIMFGL 442
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ F+++++D+++A+D ARGID+ + VI
Sbjct: 443 SG---------MKAAELHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVI 493
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 494 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 525
>gi|357152629|ref|XP_003576183.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like isoform 2
[Brachypodium distachyon]
Length = 770
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P + P+
Sbjct: 340 PKRRQTMLFSATMTEEIDELVKLSLNKPVRL----------EADPS-------------- 375
Query: 80 GKFTTPAELSEKLTTCSTNL---KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E++ + + VL L K + V+ F T AHRL +++ +
Sbjct: 376 --LKRPATLTEEVVRIRRSREANQEAVLLALCLKTFKERVIIFSGTKHSAHRL-KIMFGL 432
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ F+++++D+++A+D ARGID+ + VI
Sbjct: 433 SG---------MKAAELHGNLTQAQRLEALELFKKQEVDILIATDIAARGIDIVGVRTVI 483
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P ++K Y+HR+GRTAR GR+G +VT VT
Sbjct: 484 NFACPRDVKTYLHRVGRTARAGREGYAVTFVT 515
>gi|384493436|gb|EIE83927.1| hypothetical protein RO3G_08632 [Rhizopus delemar RA 99-880]
Length = 711
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 104/211 (49%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ + ++L ++SL P +LF S A L
Sbjct: 389 SCPKSRQTMLFSATMTDNVDQLIRMSLHNPVRLFVD-------------RSNQAASRLIQ 435
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
F+ ++ + VL L +K V+ F + AH++ L +
Sbjct: 436 EFV-----------RIRQAREADRSAVLLALCKKSFKNKVIIFFRSKAAAHQMKILFGLM 484
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+N AE++ +L +QR + +++FR ++D ++A+D ARG+D++ I+ VI
Sbjct: 485 G----------LNAAELHGNLTQEQRLEALEQFRDNQVDYLLATDLAARGLDIKGIETVI 534
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY P +Y+HR+GRTAR GR G SVTLV
Sbjct: 535 NYNMPTQFAQYLHRVGRTARAGRNGRSVTLV 565
>gi|367007110|ref|XP_003688285.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
gi|357526593|emb|CCE65851.1| hypothetical protein TPHA_0N00700 [Tetrapisispora phaffii CBS 4417]
Length = 755
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 111/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT++ ++L LSL +P ++ P + A L+ F+
Sbjct: 396 PTKRQTLLFSATMNSKIKQLISLSLRRP--VRIMINPP----------KQAAARLTQEFV 443
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
LKP +LY LIRK + + ++ FV+ + AHRL ++ +
Sbjct: 444 ------------RIRKRDLLKPALLYYLIRKLDSSSQKRIVVFVSRKEMAHRLRIIMGLL 491
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +AE++ L +QR + + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 492 G----------MKVAELHGSLTQEQRLQSVNQFKSLEVPVLICTDLASRGLDIPKIEVVI 541
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 542 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 572
>gi|260592210|ref|ZP_05857668.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
veroralis F0319]
gi|260535844|gb|EEX18461.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Prevotella
veroralis F0319]
Length = 573
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PNTCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ + C K +L + + M+ V+ F + Q R+A L
Sbjct: 218 -------EKIHQMAYVCYETQKMGILKDVFKGGNMKRVIIFSGSKQKVKRIAGALSR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL +QRN I+ +F+ ++D++VA+D ++RGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQEQRNDIMFKFKSGQVDVLVATDIVSRGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P +++ Y+HRIGRTAR GT++TLV +
Sbjct: 321 DVPHDVEDYVHRIGRTARADHDGTAITLVNADD 353
>gi|428164262|gb|EKX33294.1| hypothetical protein GUITHDRAFT_81602 [Guillardia theta CCMP2712]
Length = 679
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 107/211 (50%), Gaps = 27/211 (12%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT++HD +KL SL +P T+ G+ T T G +
Sbjct: 288 PQQRQTMLFSATMTHDVDKLAAFSLRRPVRVTA----DGSIRTDETQ----------GTL 333
Query: 80 GKFTTPAELSEKLTTCSTNL---KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
K P+ L ++ + +L L + + + F + AHRL R++ +
Sbjct: 334 NKVAVPSSLLQEFVRIRKEHEKDREAILLCLCTRTFHKRTIVFCREKRRAHRL-RIIFGL 392
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ + E++ +L QR + ++ F+ K D ++A+D RG+D++ +DVV+
Sbjct: 393 ---------LGLRVEELHGNLTQAQRLEALENFKEEKSDFLLATDLAGRGLDIKGVDVVV 443
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
N E P N+ +Y+HR+GRTAR GR+G +VTL
Sbjct: 444 NLEVPRNLAEYVHRVGRTARAGRKGRAVTLA 474
>gi|443922203|gb|ELU41680.1| ATP-dependent RNA helicase drs1 [Rhizoctonia solani AG-1 IA]
Length = 1126
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 112/211 (53%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P+ Q +LFSAT++ D E L +LSL P +LF V+P+ +
Sbjct: 358 SCPTGRQTMLFSATMTDDVETLIRLSLRHPVRLF---VDPS--------------KQTAR 400
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + +F ++ +P +L L ++ A +GV+ F + + AH+ R++ +
Sbjct: 401 GLVQEFV-------RVRAGKEAERPALLVALCQRTARKGVIIFFRSKKLAHQF-RVVFGL 452
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ E++ +L +QR + +FR + D ++A+D +RG+D+ I+ VI
Sbjct: 453 ---------CGLKALELHGNLTQEQRLNALTKFRSGEADYLLATDLASRGLDIRGIETVI 503
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P I++Y+HR+GRTAR G++G S+TLV
Sbjct: 504 NYDMPGQIEQYVHRVGRTARAGKKGRSITLV 534
>gi|403415272|emb|CCM01972.1| predicted protein [Fibroporia radiculosa]
Length = 782
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 109/211 (51%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL +P +LF P S A S
Sbjct: 368 SCPMSRQTMLFSATMTDSVDELVRMSLDKPVRLFVD-----------PKRSTA------S 410
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + +F ++ + + +L L ++ + F + + AH++ + +
Sbjct: 411 GLVQEFV-------RVRAGKESERSALLVTLCKRTFKSRAIIFFRSKKLAHQMRIVFRLL 463
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D M E++ DL +QR K +Q+FR +D ++A+D +RG+D++ I+ VI
Sbjct: 464 D----------MKADELHGDLSQEQRLKALQQFRDGAVDFLMATDLASRGLDIKGIETVI 513
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 514 NYDMPSQLAQYLHRVGRTARAGKKGRSVTLV 544
>gi|389751392|gb|EIM92465.1| DEAD-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 812
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 112/211 (53%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P+ Q +LFSAT++ ++L ++SL +P +LF P S A
Sbjct: 389 SCPTSRQTMLFSATMTDSVDELVKMSLNKPVRLFVD-----------PKRSTA------R 431
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + +F ++ + + +L L ++ GVL F + + AH++ R++ +
Sbjct: 432 GLVQEFV-------RVRAGKESDRSALLVALCKRTFKSGVLIFFRSKKLAHQV-RIMFSL 483
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M+ E++ DL +QR K +Q FR +D ++A+D +RG+D++ ID VI
Sbjct: 484 ---------LGMSCEELHGDLSQEQRLKSLQLFRDGAVDYLMATDLASRGLDIKGIDTVI 534
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
N++ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 535 NFDMPGQLAQYLHRVGRTARAGKKGRSVTLV 565
>gi|365984639|ref|XP_003669152.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
gi|343767920|emb|CCD23909.1| hypothetical protein NDAI_0C02490 [Naumovozyma dairenensis CBS 421]
Length = 771
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 113/211 (53%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q +LFSAT++ ++L LSL +P ++ P + A L+ F+
Sbjct: 425 PTKRQTMLFSATMNSKIKQLINLSLKKP--VRIMINPP----------KQAASKLTQEFV 472
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LI+K ++ + ++ FV + AH+L +L +
Sbjct: 473 R------------IRTRDHLKPALLFNLIKKLDEYSQKRMVVFVARKETAHKLRIILGLL 520
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
MN+AE++ L +QR + + +F+ +I +++ +D +RG+D+ I+VVI
Sbjct: 521 G----------MNVAELHGSLTQEQRLESVTKFKSLEIPVLICTDLASRGLDIPKIEVVI 570
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + Y+HR+GRTAR GR+G SV+LV
Sbjct: 571 NYDMPKSYDIYLHRVGRTARAGREGRSVSLV 601
>gi|303237281|ref|ZP_07323851.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
FB035-09AN]
gi|302482668|gb|EFL45693.1| ATP-dependent RNA helicase DeaD family protein [Prevotella disiens
FB035-09AN]
Length = 565
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 108/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E L Q L P SV++ A
Sbjct: 179 PKTCQTIMFSATMPKKIEDLAQTLLTNP----SVIKLA---------------------- 212
Query: 80 GKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE +L C K ++ + + +Q V+ F + Q ++A L+
Sbjct: 213 --VSKPAEKIHQLAYVCHETQKMGIIKDIFKAGNLQRVIIFSGSKQKVKQIALSLNQ--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N +++SDL +R++++ +F+ +ID++VA+D LARGID+++I +VINY
Sbjct: 268 -------KKINCGQMHSDLAQAERDEMMFKFKSGQIDVLVATDILARGIDIDDIAMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R+G+++T V +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRKGSAITFVNEDD 353
>gi|325280173|ref|YP_004252715.1| DEAD/DEAH box helicase domain-containing protein [Odoribacter
splanchnicus DSM 20712]
gi|324311982|gb|ADY32535.1| DEAD/DEAH box helicase domain protein [Odoribacter splanchnicus DSM
20712]
Length = 417
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q +LFSATL P K+ QL+ + +PA +EA + S +I
Sbjct: 178 PTKRQTILFSATL---PPKIRQLAK------QILKDPAEINIAISKPNEA---IIQSAYI 225
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C K ++ +L K + + F ++ Q LA L +
Sbjct: 226 ---------------CYETQKMAIIQELFSKPNRKKTIIFSSSKQKVKDLAYSLKRM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+N+A ++SDL+ +QR ++ +F+ K D++VA+D +ARGID+++I +VINY+
Sbjct: 268 -------KLNVAAMHSDLEQEQREAVMLDFKNGKTDILVATDIVARGIDIDDIGLVINYD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + YIHRIGRTAR G ++T V E
Sbjct: 321 VPHDPEDYIHRIGRTARANADGVAITFVCEPE 352
>gi|359407094|ref|ZP_09199729.1| DEAD/DEAH box helicase [Prevotella stercorea DSM 18206]
gi|357553742|gb|EHJ35483.1| DEAD/DEAH box helicase [Prevotella stercorea DSM 18206]
Length = 599
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 43/215 (20%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQL--SLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
P+ Q ++FSAT+ PEK+ +L SL + + +
Sbjct: 179 PATCQTIMFSATM---PEKIEELAKSLLKNPVEVKIA----------------------- 212
Query: 78 FIGKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+ PAE + + C K ++ L RK + V+ F Q + R L +
Sbjct: 213 ----VSKPAEKIKQSAYVCYETQKIGIVKDLFRKGDLNRVIIFSGKKQKVKAINRTLQQM 268
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
K+N E++SDL+ +R+ I+ +F+ +ID++VA+D +ARGID+++I +VI
Sbjct: 269 ----------KINSGEMHSDLEQAERDDILYKFKTGQIDVLVATDIVARGIDIDDIAMVI 318
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N++ P + + Y+HRIGRTAR R G ++T V+ E
Sbjct: 319 NFDVPHDPEDYVHRIGRTARAQRDGIAITFVSEDE 353
>gi|169831556|ref|YP_001717538.1| DEAD/DEAH box helicase [Candidatus Desulforudis audaxviator MP104C]
gi|169638400|gb|ACA59906.1| DEAD/DEAH box helicase domain protein [Candidatus Desulforudis
audaxviator MP104C]
Length = 533
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 71/118 (60%), Gaps = 3/118 (2%)
Query: 117 LCFVNTAQGAHR---LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
LC + A+ R R +D +A + ++ DL+ +QRN+++ FR +
Sbjct: 237 LCRILDAEAVERAIIFCRTKRRVDELAEALRSRGYSADHIHGDLEQNQRNRVMGAFREGE 296
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IDL+VA+D ARGIDV+NI VINY+ P + + Y+HRIGRT R GR GT++TLV E
Sbjct: 297 IDLLVATDVAARGIDVQNISHVINYDCPQDPESYVHRIGRTGRAGRTGTAITLVYPKE 354
>gi|443323680|ref|ZP_21052684.1| DNA/RNA helicase, superfamily II [Gloeocapsa sp. PCC 73106]
gi|442786662|gb|ELR96391.1| DNA/RNA helicase, superfamily II [Gloeocapsa sp. PCC 73106]
Length = 469
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 83 TTPAELSEKLTTCSTNLKPL-VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA++ +++ + + VL ++ A + + FV T + A L + L +
Sbjct: 211 AAPAKIEQQVYMVPRSWSKIQVLQAILELEAPEAAIVFVRTKKTAAELCQKLQEMGE--- 267
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
N+ E + +L QR +++Q FR KI LVVA+D ARG+DVEN+ VIN++ P
Sbjct: 268 -------NVYEYHGNLSQVQRERLVQRFREGKIPLVVATDIAARGLDVENLSHVINFDLP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + YIHRIGRT R G+ G +++LV
Sbjct: 321 DNAETYIHRIGRTGRAGKSGKAISLV 346
>gi|410931566|ref|XP_003979166.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like, partial
[Takifugu rubripes]
Length = 697
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT+S + + L +SL QP ++F + D P L F+
Sbjct: 362 QTMLFSATMSEEVKDLAAVSLKQPVRIFVN-----SNTDVAPY--------LRQEFV--- 405
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + V+ L+ + V+CF T + AHRL LL +
Sbjct: 406 --------RIRPNKEGDREAVVAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMG----- 452
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L +QR + ++ F+ +ID++VA+D ARG+D++ + VIN+ P
Sbjct: 453 -----LKVGELHGELSQNQRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPS 507
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K Y+HR+GRTAR GR G SV+LV E
Sbjct: 508 TVKHYVHRVGRTARAGRSGRSVSLVGESE 536
>gi|294056345|ref|YP_003550003.1| DEAD/DEAH box helicase [Coraliomargarita akajimensis DSM 45221]
gi|293615678|gb|ADE55833.1| DEAD/DEAH box helicase domain protein [Coraliomargarita akajimensis
DSM 45221]
Length = 465
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 103/212 (48%), Gaps = 32/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT++ + KL L QP + P GT A + S FI
Sbjct: 180 PKKRQTLLFSATMAPEITKLGHAMLHQPAEIR--IAPQGT--------TADKVDQSLCFI 229
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK P L E +L++ + + L F T GA LA+ L+
Sbjct: 230 GKKAKPKLLLE------------MLHRRFDEQPNELSLVFTRTKHGAKNLAKKLN----- 272
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G G K + ++ + R K ++ +RR +ID++VA+D ARGIDV+NI +VIN++
Sbjct: 273 ---GEGLKADA--IHGNKSQSAREKTLERYRRGEIDILVATDVAARGIDVKNITLVINFD 327
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P Y+HRIGRTAR G G +V+ + E
Sbjct: 328 LPMEADAYVHRIGRTARAGASGHAVSFCSEEE 359
>gi|333030152|ref|ZP_08458213.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
gi|332740749|gb|EGJ71231.1| DEAD/DEAH box helicase domain protein [Bacteroides coprosuis DSM
18011]
Length = 404
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ +KL Q L P+ V
Sbjct: 178 PKERQTIMFSATMPDKIQKLAQNILHNPEEIKLAV------------------------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ L K + L F ++ +AR L +D
Sbjct: 213 ---SKPAEKILQAAYVCYEGQKLNIINDLFSKSKSEKSLVFASSKAKVKEVARALKKMD- 268
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ + E++SDL R +++Q F+ ID++V +D +ARGIDV++I +VINY
Sbjct: 269 ---------LKVGEIHSDLNQKTREEMLQNFKAGNIDILVGTDIIARGIDVDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P++ + Y+HRIGRTAR G ++T V T +
Sbjct: 320 DVPNDSEDYVHRIGRTARANNDGVAITFVNTKD 352
>gi|119491286|ref|ZP_01623340.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
gi|119453450|gb|EAW34612.1| ATP-dependent RNA helicase [Lyngbya sp. PCC 8106]
Length = 509
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 11/146 (7%)
Query: 83 TTPAELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
TTP ++S+++ T K L ++ + + FV T Q A L L
Sbjct: 248 TTPKQISQEVYTVPRGWTKARALQPILELEDPESAIVFVRTKQAAAELTSCL-------- 299
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+GAG ++ E + +L QR +++ FR+R++ +VA+D ARG+DV+++ VINY+ P
Sbjct: 300 QGAG--HSVDEYHGNLNQSQRERLLVRFRKRQVRWIVATDIAARGLDVDHLTHVINYDLP 357
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
DN + Y+HRIGRT R GR+G ++TL+
Sbjct: 358 DNAESYVHRIGRTGRAGREGKAITLL 383
>gi|423306897|ref|ZP_17284896.1| hypothetical protein HMPREF1072_03836 [Bacteroides uniformis
CL03T00C23]
gi|423308519|ref|ZP_17286509.1| hypothetical protein HMPREF1073_01259 [Bacteroides uniformis
CL03T12C37]
gi|392677982|gb|EIY71394.1| hypothetical protein HMPREF1072_03836 [Bacteroides uniformis
CL03T00C23]
gi|392686960|gb|EIY80258.1| hypothetical protein HMPREF1073_01259 [Bacteroides uniformis
CL03T12C37]
Length = 428
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL AG P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AGNILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKEVTKALKQM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVAITFVSEKE 352
>gi|409358710|ref|ZP_11237069.1| dead/deah box helicase [Dietzia alimentaria 72]
Length = 539
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 18/192 (9%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q LF + ++ A T T+PT A A + SG + TT + +
Sbjct: 231 PEK-RQTMLFSATMPGPIITLARTFLTKPTHIRAEAAD--SGATHENTT-----QYVYRA 282
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
+ KP V+ ++++ + F T + A +LA D++A +G ++ ++
Sbjct: 283 HSMDKPEVVSRILQADGRGATMIFTRTKRTAQKLA------DDLAERG----YSVGAIHG 332
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
DL R K ++ FR ++D++VA+D ARGIDV+++ VINY+ P++ K Y+HRIGRT
Sbjct: 333 DLGQGAREKSLKAFRTGEVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTG 392
Query: 216 RGGRQGTSVTLV 227
R GR+G +VTLV
Sbjct: 393 RAGRKGVAVTLV 404
>gi|282878371|ref|ZP_06287163.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
35310]
gi|281299557|gb|EFA91934.1| putative ATP-dependent RNA helicase DeaD [Prevotella buccalis ATCC
35310]
Length = 558
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ ++ ++ ++ V+ F Q ++++ L +
Sbjct: 214 SKPAEKIKQTAYVCHETQKLGIIKKIFKQGDLKRVIIFCGAKQKVKQVSQALQRM----- 268
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N E++SDL QR++++ +F+ +ID++VA+D L+RGID+++I +VINY+ P
Sbjct: 269 -----KINCGEMHSDLDQAQRDEVMFQFKSGQIDVLVATDILSRGIDIDDIAMVINYDVP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR R G ++TLV+ +
Sbjct: 324 HDAEDYVHRIGRTARADRDGAAITLVSKDD 353
>gi|303273266|ref|XP_003055994.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462078|gb|EEH59370.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 526
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
R ++LL SATL+HD + L L P++ S S +D+L +
Sbjct: 258 RLRKLLISATLTHDSVRFAHLHLNSPRVIQS--------------SAYESDSLCDS---Q 300
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ P++L E KPL L L+++ V+ F ++ HRL LL I
Sbjct: 301 YVIPSDLDENFIVTEAIKKPLALCALLKRIGRVPVIVFTSSVAITHRLFLLLDSIK---- 356
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
G + E S R+ + FR L+VASD RG+D++++ VI+Y+ P
Sbjct: 357 ---GLPSSAVEYSSSFSQGVRSAALDSFRSGSKQLLVASDAATRGLDIKHVAAVISYDVP 413
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHR+GRTAR G++GT+ T+ + E
Sbjct: 414 LHQNTYIHRVGRTARAGQKGTAYTICRSSE 443
>gi|160888241|ref|ZP_02069244.1| hypothetical protein BACUNI_00650 [Bacteroides uniformis ATCC 8492]
gi|156862187|gb|EDO55618.1| DEAD/DEAH box helicase [Bacteroides uniformis ATCC 8492]
Length = 428
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL AG P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AGNILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKEVTKALKQM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVAITFVSEKE 352
>gi|270296763|ref|ZP_06202962.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272750|gb|EFA18613.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 429
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL AG P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AGNILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKEVTKALKQM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVAITFVSEKE 352
>gi|449460106|ref|XP_004147787.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Cucumis
sativus]
Length = 733
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 39/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L +LSL +P ++ +PA
Sbjct: 310 PKRRQTMLFSATMTEEVNELIKLSLTKPLRLSA--DPATK-------------------- 347
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
P L+E +L + VL L K V+ F T Q AHRL ++L +
Sbjct: 348 ----RPKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRL-KILFGL 402
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ ++ VI
Sbjct: 403 -------AGFKA--AELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVETVI 453
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ P ++ Y+HR+GRTAR GR+G +VT VT ++
Sbjct: 454 NFACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 488
>gi|317480121|ref|ZP_07939231.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
gi|316903668|gb|EFV25512.1| DEAD/DEAH box helicase [Bacteroides sp. 4_1_36]
Length = 405
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL AG P +
Sbjct: 155 PKERQTIMFSATM---PAKIQQL--------------AGNILNNPAEVKLAV-------- 189
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 190 ---SKPAEKIVQAAYVCYENQKLGIIRSLFAEETPERVIIFASSKLKVKEVTKALKQM-- 244
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 245 --------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 296
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 297 DVPHDSEDYVHRIGRTARANNDGVAITFVSEKE 329
>gi|308810755|ref|XP_003082686.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
gi|116061155|emb|CAL56543.1| DEAD/DEAH box helicase, putative (ISS) [Ostreococcus tauri]
Length = 448
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 39/211 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSATL+ E L LS+ P + AD L
Sbjct: 15 PKKRQTLLFSATLTAGVEALASLSMKNPARLS-------------------ADTLG---- 51
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
TTP L E KL + K L ++ + + + F T Q AHRL ++
Sbjct: 52 ---TTPEHLIEEVLKLKPNQSAQKEAFLMAIVSRSFDKSTIVFTKTKQQAHRLKIIM--- 105
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+K+ E++ D+ QR + +FR ++ ++A+D ARG+D+ ++D VI
Sbjct: 106 -------GLSKVKAGELHGDMTQTQRLAALDDFRTGRVTHLIATDVAARGLDIPSVDAVI 158
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+Y+AP + Y+HR+GRTAR G++GT++T +
Sbjct: 159 SYDAPKTLASYLHRVGRTARAGKKGTALTFM 189
>gi|449516409|ref|XP_004165239.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
28-like [Cucumis sativus]
Length = 733
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 39/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L +LSL +P ++ +PA
Sbjct: 310 PKRRQTMLFSATMTEEVNELIKLSLTKPLRLSA--DPATK-------------------- 347
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
P L+E +L + VL L K V+ F T Q AHRL ++L +
Sbjct: 348 ----RPKTLTEEVVRLRRMREVNQEAVLLSLCSKTFTSKVIVFSGTKQAAHRL-KILFGL 402
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ ++ VI
Sbjct: 403 -------AGFKA--AELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVETVI 453
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ P ++ Y+HR+GRTAR GR+G +VT VT ++
Sbjct: 454 NFACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 488
>gi|12845167|dbj|BAB26644.1| unnamed protein product [Mus musculus]
Length = 165
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 70/111 (63%), Gaps = 9/111 (8%)
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176
LCF N+ + +HRL L V ++AE S QR KI+++F + KI L
Sbjct: 7 LCFTNSRENSHRLYLLAQAFGGV---------SVAEFSSRYGPGQRKKILKQFEQGKIQL 57
Query: 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
++++D ARGIDV+ +++VINY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 58 LISTDATARGIDVQGVELVINYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 108
>gi|168010159|ref|XP_001757772.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691048|gb|EDQ77412.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 753
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 105/215 (48%), Gaps = 39/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + L LSL P ++ P++
Sbjct: 303 PKRRQTMLFSATMTEEVSNLINLSLNSPVRLSA----------DPSTKR----------- 341
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
P LSE K+ N K VL L + + V+ F AHRL ++L +
Sbjct: 342 -----PVSLSEEVVKIRPALENDKEAVLLALCTRTFKEKVIIFSGMKVEAHRL-KILFGL 395
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AG K AE++ +L R ++ FR++++D ++A+D ARG+D+ ++ VI
Sbjct: 396 -------AGLKA--AELHGNLTQAMRLDALESFRKQEVDFLIATDVAARGLDIVGVETVI 446
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ P +I Y+HR+GRTAR GR+G +VT VT E
Sbjct: 447 NFHCPSDITVYVHRVGRTARAGRKGCAVTFVTERE 481
>gi|83647393|ref|YP_435828.1| superfamily II DNA/RNA helicase [Hahella chejuensis KCTC 2396]
gi|83635436|gb|ABC31403.1| Superfamily II DNA and RNA helicase [Hahella chejuensis KCTC 2396]
Length = 453
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q L+FSAT S+D KL + + P + SV P T T +
Sbjct: 176 PKRRQNLMFSATFSNDIRKLAKELVNNP-VEISVSPPNTTAKT----------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K +L QLIR + L F T GA+RL R L
Sbjct: 219 KQWIHPVDKKQKSA---------LLTQLIRDNNWDQALVFSRTKHGANRLTRQL------ 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG +N A ++ D + R K + +F+ + ++VA+D ARGID++ + V+N++
Sbjct: 264 CAKG----INAAAIHGDKSQNARTKALADFKTGSVQILVATDIAARGIDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G +G +V+LV+ E
Sbjct: 320 LPQVAEDYVHRIGRTGRAGAEGQAVSLVSADE 351
>gi|255538978|ref|XP_002510554.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223551255|gb|EEF52741.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 783
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 108/213 (50%), Gaps = 41/213 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L +LSL +P ++ P++
Sbjct: 322 PKRRQTMLFSATMTEEINELIKLSLTKPLRLSA----------DPSTKR----------- 360
Query: 80 GKFTTPAELSEKLTTC----STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
PA L+E++ N + VL L K V+ F T Q AHRL ++L
Sbjct: 361 -----PATLTEEVVRIRRMREVN-QEAVLLALCSKTFTSRVIIFSGTKQAAHRL-KILFG 413
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 414 L-------AGFKA--AELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTV 464
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY P + Y+HR+GRTAR GR+G +VT VT
Sbjct: 465 INYACPRELTSYVHRVGRTARAGREGYAVTFVT 497
>gi|269125451|ref|YP_003298821.1| DEAD/DEAH box helicase domain-containing protein [Thermomonospora
curvata DSM 43183]
gi|268310409|gb|ACY96783.1| DEAD/DEAH box helicase domain protein [Thermomonospora curvata DSM
43183]
Length = 565
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 78/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP VL +L++ + + F T + R+A ++ +G A V+ DL
Sbjct: 253 KPEVLARLLQANGRGLTMVFCQTKRACDRIAA------DLTRRG----FAAAAVHGDLGQ 302
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
QR + ++ FR K+D++VA+D ARG+DVE++ VINYE PD+ + ++HRIGRT R GR
Sbjct: 303 GQRERALRAFRSGKVDVLVATDVAARGLDVEDVTHVINYECPDSAETHVHRIGRTGRAGR 362
Query: 220 QGTSVTLV 227
+GT+VTLV
Sbjct: 363 EGTAVTLV 370
>gi|224024964|ref|ZP_03643330.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
18228]
gi|224018200|gb|EEF76198.1| hypothetical protein BACCOPRO_01695 [Bacteroides coprophilus DSM
18228]
Length = 423
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T T P +
Sbjct: 178 PKERQTIMFSATM---PTKIQQL--------------AKTILTNPVEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ L ++ + V+ F ++ + + L +
Sbjct: 213 ---SKPAEKIIQAAYICYEAQKLGIIESLFKEQQPERVIIFASSKIKVKEVTKALKRL-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL QR I+ EFR +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLDQSQREAIMHEFRNGRINMLVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGCAITFVSETE 352
>gi|307352826|ref|YP_003893877.1| DEAD/DEAH box helicase domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156059|gb|ADN35439.1| DEAD/DEAH box helicase domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 536
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 40/222 (18%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSL-FQPKLFTSVVEPAGTGDTQPTSSEAG 70
M + P Q +LFSAT+ P+ + ++S FQ K + P
Sbjct: 169 MEEILSKAPGERQTILFSATM---PKPILKISKSFQKKPEFVTINP-------------- 211
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
G+ T P + +K K VL +LI ++ + F NT + L+
Sbjct: 212 ---------GQLTVPL-IEQKYLEVREKDKLEVLCRLIDINSSDLSMIFCNTKKAVDELS 261
Query: 131 RLLHHIDNVATKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
+L ++ AE ++ D+K QR++++ FR ID+++A+D ARGID+
Sbjct: 262 EMLR-----------SRGYFAEGLHGDMKQQQRDRVMSRFRSGSIDILIATDVAARGIDI 310
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++IDVV NY+ P +++ YIHRIGRT R G+ G S T V+ E
Sbjct: 311 DDIDVVYNYDVPQDVEYYIHRIGRTGRAGKSGMSYTFVSPKE 352
>gi|340352522|ref|ZP_08675386.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella pallens
ATCC 700821]
gi|339613492|gb|EGQ18232.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella pallens
ATCC 700821]
Length = 581
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 84/137 (61%), Gaps = 10/137 (7%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
C K ++ + + H Q V+ F + Q ++A L+ K+N +++
Sbjct: 227 CYETQKMEIVKDIFKSHNPQRVIIFSGSKQKVKQIASSLNQ----------KKINCGQMH 276
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
SDL QR++++ +F+ +ID++VA+D L+RGID+++I +VINY+ P++ + Y+HRIGRT
Sbjct: 277 SDLDQAQRDEMMFKFKSGQIDVLVATDILSRGIDIDDITMVINYDVPNDAEDYVHRIGRT 336
Query: 215 ARGGRQGTSVTLVTTHE 231
AR R G ++TLV+ +
Sbjct: 337 ARADRDGIAITLVSDDD 353
>gi|260774607|ref|ZP_05883519.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
gi|260610401|gb|EEX35608.1| ATP-dependent RNA helicase [Vibrio metschnikovii CIP 69.14]
Length = 408
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 106/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL P+L ++P P A N
Sbjct: 171 PAKKQTLLFSATLL-------------PELEEKALQPLN----DPIKISANPPN------ 207
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T E+ E+L + K VL L+++H VL F++ A D +
Sbjct: 208 ---QTVPEIEEQLYLVNKGSKAQVLIHLLKQHHWSQVLVFISARDNA----------DAL 254
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A K + +A ++ + +R +I+ +F+++KI++++A+D LARGI +E + VVIN++
Sbjct: 255 AKKLLKAGIRVAALHGNKDQTEREQILTQFKQQKIEVLIATDLLARGIHIEQLPVVINFD 314
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHR+GRTAR G+ G +++LV +E
Sbjct: 315 LPPSPAVYIHRVGRTARAGQTGLALSLVCHNE 346
>gi|354603350|ref|ZP_09021349.1| hypothetical protein HMPREF9450_00264 [Alistipes indistinctus YIT
12060]
gi|353349227|gb|EHB93493.1| hypothetical protein HMPREF9450_00264 [Alistipes indistinctus YIT
12060]
Length = 489
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
+ + + C N K ++ L + + F ++ Q LA L + K
Sbjct: 219 IQQGIYVCYENQKMEIVRALFGEPTGTKTIIFSSSKQKVKELAYTLKRM----------K 268
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+N A ++SDL+ +QR +++ +F+ KIDL+VA+D +ARGID+E+I V+NY+ P + + Y
Sbjct: 269 LNAAAMHSDLEQEQREEVMLDFKNGKIDLLVATDIVARGIDIEDIGTVVNYDVPHDPEDY 328
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
IHRIGRTAR G ++T V+ E
Sbjct: 329 IHRIGRTARASATGRAITFVSEKE 352
>gi|154150192|ref|YP_001403810.1| DEAD/DEAH box helicase [Methanoregula boonei 6A8]
gi|153998744|gb|ABS55167.1| DEAD/DEAH box helicase domain protein [Methanoregula boonei 6A8]
Length = 532
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 74/118 (62%), Gaps = 10/118 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
Q + F NT +GA LA + +G E++ D+K QR++++ FR+
Sbjct: 245 QLAIIFCNTKRGAEDLA------GRIRARG----YRAEELHGDMKQSQRDRVMGGFRKGT 294
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ID+++A+D ARGIDVE++D+VINY+ P ++ YIHRIGRT R G+ G ++T VT+ +
Sbjct: 295 IDILIATDVAARGIDVEDVDMVINYDVPQDVDYYIHRIGRTGRAGKSGRAITFVTSRD 352
>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660682|sp|Q6CX73.1|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
Length = 398
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 104/221 (47%), Gaps = 37/221 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D F P Q ++ SAT+S D ++E + P
Sbjct: 188 IYDIFTKLPPTIQVVVVSATMSKD-----------------ILEITKKFMSDPVKILVKR 230
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D +S I ++ E E K T L + Q + F NT + L+
Sbjct: 231 DEISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCV---------IFCNTRKKVDWLS 281
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
R L T +++ ++ D+K ++R++++ +FR K +++++D ARGIDV+
Sbjct: 282 RKLTQ----------TNFSVSSMHGDMKQEERDQVMNDFRSGKARVLISTDVWARGIDVQ 331
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
I +VINY+ PDN++ YIHRIGR+ R GR+G ++ +T E
Sbjct: 332 QISLVINYDIPDNLENYIHRIGRSGRFGRKGVAINFITKEE 372
>gi|345880198|ref|ZP_08831755.1| hypothetical protein HMPREF9431_00419 [Prevotella oulorum F0390]
gi|343923775|gb|EGV34459.1| hypothetical protein HMPREF9431_00419 [Prevotella oulorum F0390]
Length = 544
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 39/210 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E+L + L QPK+ V
Sbjct: 179 PKNCQTIMFSATMPKKIEELAKTLLKQPKVIKLAV------------------------- 213
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ QL + + +Q V+ F + ++A L
Sbjct: 214 ---SKPAEKIHQSAYVCHEGQKIGIINQLFKNNDLQRVIIFCGSKMKVKQVAGALQR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL R+ ++ +F+ + D++VA+D ++RGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQATRDDVMFKFKSGQFDVLVATDVISRGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ P + + Y+HRIGRTAR R GT++T V+
Sbjct: 321 DVPHDAEDYVHRIGRTARAARTGTAITFVS 350
>gi|319899115|ref|YP_004159208.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
gi|319403079|emb|CBI76634.1| ATP-dependent RNA helicase [Bartonella clarridgeiae 73]
Length = 416
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 15/170 (8%)
Query: 62 TQPTSSEAGADNLSSG-----FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV 116
T P ADNL + + TT E+++ L ST+ K VL +L+ A+ V
Sbjct: 194 TMPKEVNVLADNLLKKPIKIEVVPQGTTAVEITQVLYCVSTSEKKSVLSKLLTNPALASV 253
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176
+ F+ T GA +AR L T ++A ++ + + R +++FR + +
Sbjct: 254 IVFIRTKHGADSVARSLKK----------TGYSVATIHGNKSQNARQCALKDFREGLVRI 303
Query: 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
+VA+D +ARGID+ I VINY+ PDN + Y+HRIGRT R G G ++TL
Sbjct: 304 LVATDIVARGIDIPGISHVINYDLPDNAESYVHRIGRTGRNGASGDAITL 353
>gi|433651795|ref|YP_007278174.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
gi|433302328|gb|AGB28144.1| DNA/RNA helicase, superfamily II [Prevotella dentalis DSM 3688]
Length = 579
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ D EKL Q L P + V
Sbjct: 179 PKTCQTIMFSATMPKDIEKLAQSLLKNPAVVKLAV------------------------- 213
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ + + ++ V+ F + Q + + + +
Sbjct: 214 ---SKPAEKIKQSAYICYETQKLEIIKDIFKAGDLKRVIVFSGSKQKVKHINQAMQRL-- 268
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL+ +R+ I+ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 269 --------HINCGEMHSDLEQAERDDIMFKFKSGQIDVLVATDIVARGIDIDDIAMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++T+V +
Sbjct: 321 DVPHDAEDYVHRIGRTARAERDGVAITMVNEDD 353
>gi|383759970|ref|YP_005438956.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381380640|dbj|BAL97457.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 485
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P Q LLFSAT S + ++L AG+ +P + E N
Sbjct: 200 ILSYLPKARQTLLFSATFSPEIKRL-----------------AGSYLQEPVTVEVARPN- 241
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
T + + ++ S + K + Q++R+ + + FVN+ GA RLAR
Sbjct: 242 --------ATASTVEQRFYGVSDDDKRATVRQILRQRELSQAIVFVNSKLGAARLARSFE 293
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
D + T+ ++ D D+R K + F+ ++DL+VA+D ARG+D+ ++
Sbjct: 294 R-DGLKTQA---------LHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIADLPA 343
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VTL+T
Sbjct: 344 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLIT 377
>gi|171656|gb|AAA34666.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae]
Length = 722
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 377 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 424
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 425 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 472
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 473 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 522
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 523 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 553
>gi|91794302|ref|YP_563953.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716304|gb|ABE56230.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 419
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 36/213 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D P + Q LLFSATL+ + L +PK V+E A
Sbjct: 181 DLLKRLPKQRQTLLFSATLNDSIFSFSKNLLNEPK----VIEVAKAN------------- 223
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
T A++ E++ K +L L+ K Q VL F T QGA
Sbjct: 224 ---------TKVAKIEERVYCVDEERKLSLLCHLLSKERWQQVLVFSRTKQGA------- 267
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
DN+A + + + + DL R ++++F + K+ ++VA+D ARG+D+E+++
Sbjct: 268 ---DNLACQMQKSGIEALAFHGDLSQSVRESVLKDFSQAKVQVLVATDVAARGLDIEDLN 324
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
V+NYE P + YIHRIGRT R G+ G +VTL
Sbjct: 325 YVVNYELPHVSEDYIHRIGRTGRAGKDGIAVTL 357
>gi|227206264|dbj|BAH57187.1| AT4G16630 [Arabidopsis thaliana]
Length = 617
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 41/213 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P ++ P++
Sbjct: 280 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA----------DPSARR----------- 318
Query: 80 GKFTTPAELSEKLT----TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
P L+E++ T N + VL L + V+ F T Q AHRL ++L
Sbjct: 319 -----PPGLTEEVVRIRRTREAN-QEAVLLSLCTRTFKSKVIIFSGTKQAAHRL-KILFG 371
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 372 L-------AGLKA--AELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 422
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY P I Y+HR+GRTAR GR+G +VT VT
Sbjct: 423 INYACPREIDSYVHRVGRTARAGREGYAVTFVT 455
>gi|340346533|ref|ZP_08669657.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
dentalis DSM 3688]
gi|339611606|gb|EGQ16428.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
dentalis DSM 3688]
Length = 591
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ D EKL Q L P + V
Sbjct: 191 PKTCQTIMFSATMPKDIEKLAQSLLKNPAVVKLAV------------------------- 225
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ + + ++ V+ F + Q + + + +
Sbjct: 226 ---SKPAEKIKQSAYICYETQKLEIIKDIFKAGDLKRVIVFSGSKQKVKHINQAMQRL-- 280
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL+ +R+ I+ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 281 --------HINCGEMHSDLEQAERDDIMFKFKSGQIDVLVATDIVARGIDIDDIAMVINY 332
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++T+V +
Sbjct: 333 DVPHDAEDYVHRIGRTARAERDGVAITMVNEDD 365
>gi|397779795|ref|YP_006544268.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
gi|396938297|emb|CCJ35552.1| ATP-dependent RNA helicase DeaD [Methanoculleus bourgensis MS2]
Length = 521
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 12/130 (9%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAE-VYSDLKFDQ 161
+L +L+ + + L F NT +G L L + AE ++ D+K Q
Sbjct: 234 ILCRLLDMYDPELSLVFSNTKRGVDDLTAHLQ-----------ARGYFAEGLHGDMKQSQ 282
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
R++++ +FR ID++VA+D ARGIDVE++D+VINYE P +I+ YIHRIGRTAR GR G
Sbjct: 283 RDRVMAKFRAGTIDILVATDVAARGIDVEDVDLVINYEVPQDIEYYIHRIGRTARAGRTG 342
Query: 222 TSVTLVTTHE 231
++T V E
Sbjct: 343 RAITFVGPRE 352
>gi|121608317|ref|YP_996124.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121552957|gb|ABM57106.1| DEAD/DEAH box helicase domain protein [Verminephrobacter eiseniae
EF01-2]
Length = 486
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 100/214 (46%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P LLFSAT S + +L L QP + V P T T
Sbjct: 177 ILSYLPKERTTLLFSATFSPEIRRLASSYLHQP-VTIEVARPNATAAT------------ 223
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ ++ + + + K ++Q++R ++ FVN+ G RLAR L
Sbjct: 224 -------------VEQRFYSANDDDKRRAIHQVLRTRGLKQAFIFVNSKLGCARLARSLE 270
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ A ++ D D+R K +Q F+ +DL+V +D ARG+D++++
Sbjct: 271 R----------EGLRTAALHGDRSQDERLKALQAFKSGDVDLLVCTDVAARGLDIKDVPA 320
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VTLV+
Sbjct: 321 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|47211205|emb|CAF90162.1| unnamed protein product [Tetraodon nigroviridis]
Length = 517
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 105/209 (50%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT+S + + L +SL QP ++F + D P L F+
Sbjct: 125 QTMLFSATMSEEVKDLAAVSLKQPVRIFVN-----SNTDVAPY--------LRQEFV--- 168
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + V+ L+ + V+CF T + AHRL LL +
Sbjct: 169 --------RIRPNKEGDREAVVAALLTRTFQDHVMCFTQTRKQAHRLHILLGLMG----- 215
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L +QR + ++ F+ +ID++VA+D ARG+D++ + VIN+ P
Sbjct: 216 -----LKVGELHGELSQNQRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPS 270
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K Y+HR+GRTAR GR G SV+LV E
Sbjct: 271 TMKHYVHRVGRTARAGRSGRSVSLVGESE 299
>gi|383811605|ref|ZP_09967065.1| putative cold-shock DEAD-box protein A [Prevotella sp. oral taxon
306 str. F0472]
gi|383355753|gb|EID33277.1| putative cold-shock DEAD-box protein A [Prevotella sp. oral taxon
306 str. F0472]
Length = 572
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
PS Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PSTCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ + C K +L + + M+ V+ F + Q ++A L
Sbjct: 218 -------EKIHQMAYVCYETQKMGILKDVFKGGNMKRVIIFSGSKQKVKQIAGSLSR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL +QRN I+ +F+ ++D++VA+D ++RGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQEQRNDIMFKFKSGQVDVLVATDIVSRGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P +++ Y+HRIGRTAR GT++TLV +
Sbjct: 321 DVPHDVEDYVHRIGRTARADHDGTAITLVNEDD 353
>gi|282880318|ref|ZP_06289032.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
timonensis CRIS 5C-B1]
gi|281305820|gb|EFA97866.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
timonensis CRIS 5C-B1]
Length = 583
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 91/150 (60%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ + +K ++ V+ F + ++A LH ++
Sbjct: 214 SKPAEKIKQCAYICYEAQKLKIIEDIFKKGDLKRVIVFCGSKLKVKQVAAALHRMN---- 269
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+N +E++SDL+ QR++++ F+ ++D++VA+D +ARGID+++I +VINY+ P
Sbjct: 270 ------VNCSEMHSDLEQAQRDEVMLNFKSGQLDVLVATDIVARGIDIDDISMVINYDVP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ + Y+HRIGRTAR R G ++TLV +
Sbjct: 324 NDAEDYVHRIGRTARADRDGQAITLVAQDD 353
>gi|212555159|gb|ACJ27613.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 482
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D KL + + P + SV T +T +
Sbjct: 176 PAKRQNLMFSATFSDDIRKLAKGLVNNP-VEISVTPRNATANT----------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K + VL +LI++H Q VL F T GA+RLA+ N+
Sbjct: 219 KQWICPVDKGQKAS---------VLVKLIKQHDWQQVLVFSRTKHGANRLAK------NL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG + A ++ + R K + EF+ + ++VA+D ARG+D++ + V+N++
Sbjct: 264 DAKG----ITAAAIHGNKSQGARTKALAEFKSGDVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV+ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGATGQAVSLVSDEE 351
>gi|395334307|gb|EJF66683.1| DEAD-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 773
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 110/211 (52%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P+ Q +LFSAT++ ++L ++SL +P +LF V+P A A L
Sbjct: 362 SCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLF---VDP----------KRATARGLLQ 408
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
F+ ++ + +L L ++ V+ F + + AH++ + +
Sbjct: 409 EFV-----------RVRAGKEAERSALLVALCKRTFKSRVIIFFRSKKLAHQMRIVFRLL 457
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D M E++ DL +QR K +Q+FR +D ++A+D +RG+D++ I+ VI
Sbjct: 458 D----------MKCDELHGDLSQEQRLKALQQFRDGHVDYLMATDLASRGLDIKGIETVI 507
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 508 NYDMPGQLAQYLHRVGRTARAGKKGRSVTLV 538
>gi|258645737|ref|ZP_05733206.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
gi|260403106|gb|EEW96653.1| ATP-dependent RNA helicase DeaD [Dialister invisus DSM 15470]
Length = 424
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 99/213 (46%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+ + +KL + + V E A + E
Sbjct: 173 PKKRQVLLFSATMPPEAKKLAH-KYMKSAVVADVAEKAVASTVEQRVYETVK-------- 223
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA-RLLHHIDN 138
+ K + +LK + Y + F NT +GAH LA RL D
Sbjct: 224 ---------THKFSLLVRHLKEINPYMAV---------VFCNTREGAHELAGRLQEETDL 265
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V + E++ ++ QRN++I+EF + + ++VASD ARG+DVE I V NY
Sbjct: 266 V----------VDEIHGNMSQGQRNQVIREFEKARTQVLVASDIAARGLDVEGITHVFNY 315
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P N++ YIHRIGRT R G QG S+T T +
Sbjct: 316 DIPRNLEYYIHRIGRTGRAGTQGVSITYATPED 348
>gi|333916134|ref|YP_004489866.1| DEAD/DEAH box helicase domain-containing protein [Delftia sp.
Cs1-4]
gi|333746334|gb|AEF91511.1| DEAD/DEAH box helicase domain protein [Delftia sp. Cs1-4]
Length = 504
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSAT S + ++L S Q + V P T T
Sbjct: 188 LLFSATFSPEIKRLAS-SYLQDPVTIEVARPNETAST----------------------- 223
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+ ++ + S + K L L+++ ++ F N+ G RL R L AT
Sbjct: 224 --VEQRFYSVSDDDKRYALRSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATA--- 278
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ D D+R K ++ F+R ++DL+V +D ARG+D++++ V NY+ P N +
Sbjct: 279 -------LHGDKSQDERLKALEAFKRGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAE 331
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R G G +VTLVT H+
Sbjct: 332 DYVHRIGRTGRAGASGIAVTLVTNHD 357
>gi|397668007|ref|YP_006509544.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395131418|emb|CCD09686.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 589
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQYG----------LRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|375011473|ref|YP_004988461.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347397|gb|AEV31816.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 419
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT++ KL + L PK V G TQ
Sbjct: 176 PAKKQSLMFSATMAPKIRKLAKEILHSPKEVNLAVSKPAAGVTQKV-------------- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T + P+V L K + ++ F +T + +L R+L N
Sbjct: 222 ------------YLTFESQKTPMVKEILSDKDNFKSIIIFCSTKKKVEQLTRVLKS-KNY 268
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ +G V SD ++R I F+ R+ +VVA+D L+RGID+++I++VINY+
Sbjct: 269 SVEG---------VSSDYDQEKREAAILRFKARQTRIVVATDVLSRGIDIKDINLVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P++ + Y+HRIGRTAR +G +VTLV
Sbjct: 320 VPNDPEDYVHRIGRTARAETKGMAVTLV 347
>gi|260912300|ref|ZP_05918851.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633601|gb|EEX51740.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 472 str.
F0295]
Length = 447
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 89/150 (59%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE +++K C K VL + + ++ V+ F Q + R L +
Sbjct: 214 SKPAEKIAQKAYLCYEPQKLKVLQDIFKAGSLNRVIIFSGKKQKVKEINRALVRM----- 268
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N E++SDL ++R++++ +F+ D++VA+D L+RGID+++I +VINY+ P
Sbjct: 269 -----KVNSDEMHSDLSQEERDRVMFKFKSGATDVLVATDILSRGIDIDDITMVINYDVP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++ Y+HRIGRTAR R G ++TL++ +
Sbjct: 324 HDVEDYVHRIGRTARAERDGVAITLISDQD 353
>gi|160897598|ref|YP_001563180.1| DEAD/DEAH box helicase [Delftia acidovorans SPH-1]
gi|160363182|gb|ABX34795.1| DEAD/DEAH box helicase domain protein [Delftia acidovorans SPH-1]
Length = 504
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 97/206 (47%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSAT S + ++L S Q + V P T T
Sbjct: 188 LLFSATFSPEIKRLAS-SYLQDPVTIEVARPNETAST----------------------- 223
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+ ++ + S + K L L+++ ++ F N+ G RL R L AT
Sbjct: 224 --VEQRFYSVSDDDKRYALRSLLKQRDIRQAFVFSNSKLGCARLTRALERDGLRATA--- 278
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ D D+R K ++ F+R ++DL+V +D ARG+D++++ V NY+ P N +
Sbjct: 279 -------LHGDKSQDERLKALEAFKRGEVDLLVCTDVAARGLDIKDVPAVFNYDVPFNAE 331
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R G G +VTLVT H+
Sbjct: 332 DYVHRIGRTGRAGASGIAVTLVTNHD 357
>gi|302142686|emb|CBI19889.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 110/216 (50%), Gaps = 41/216 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LS+ +P + P++
Sbjct: 443 PKRRQTMLFSATMTEEVDELVKLSMTKPMRLAA----------DPSTKR----------- 481
Query: 80 GKFTTPAELSEKLTTC----STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
PA L+E++ N + VL L K + F T Q AHRL ++L
Sbjct: 482 -----PATLTEEVVRIRRMREVN-QEAVLLALCSKTFTAKAIIFSGTKQAAHRL-KILFG 534
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 535 L-------AGFKA--AELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTV 585
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY P ++ Y+HR+GRTAR GR+G +VT VT ++
Sbjct: 586 INYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 621
>gi|448113511|ref|XP_004202369.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359465358|emb|CCE89063.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 623
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 111/215 (51%), Gaps = 24/215 (11%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F + + Q+L+FSATL+ D K+ L L +P+L D + +E
Sbjct: 371 FDQWKLKTQKLIFSATLTTDAGKIAGLQLQKPRLVI-------VNDKEQMVNEM------ 417
Query: 76 SGFIGKFTTPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLAR 131
F+ P L E ++ +++KPL+L + L++ + VL F + + + RLA+
Sbjct: 418 ------FSVPPNLLEYKIQVGAAKSSMKPLILARYLLQNNKTSNVLVFAKSNEASIRLAK 471
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL + N T T + ++ R K ++EF +K+ ++VA+D +ARGID+ +
Sbjct: 472 LLQILMNSLTSSHQTSVAYLNSTNN-STSVRQKTLKEFSTQKVGILVATDLIARGIDILS 530
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
I V+NY+ P + ++Y+HR+GRTAR G + T
Sbjct: 531 ITDVVNYDLPISAREYVHRVGRTARANNHGNAYTF 565
>gi|375144587|ref|YP_005007028.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361058633|gb|AEV97624.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 380
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
M F P++ Q LLFSAT S D + + + L P L VVE +
Sbjct: 169 MDKVFQLLPAKRQNLLFSATASEDIKDMQRHLLHLP-LTIEVVEEEHS------------ 215
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLK--PLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
EL E+L T + PL+ Y LI+ MQ VL F + + A
Sbjct: 216 --------------IELIEQLAYHVTEARKGPLLRY-LIKNEGMQQVLVFTSAVRTA--- 257
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
DN+ K + A ++ L R K +Q F+ K+ ++VASD +RGID+
Sbjct: 258 -------DNLTGKLIKNGIQAASLHGHLSQTGRLKTLQRFKEGKLRVLVASDLASRGIDI 310
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
E + +VINYE P + K YIHRIGRT R G G +V+L+
Sbjct: 311 EQLPIVINYELPRSPKDYIHRIGRTGRAGASGRAVSLIC 349
>gi|319949507|ref|ZP_08023558.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
gi|319436821|gb|EFV91890.1| DEAD/DEAH box helicase [Dietzia cinnamea P4]
Length = 499
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 18/192 (9%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q LF + ++ A T T+PT A A + SG + TT + +
Sbjct: 203 PEK-RQTMLFSATMPGPIITLARTFLTKPTHIRAEAAD--SGATHENTT-----QHVYRA 254
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
+ KP V+ ++++ + F T + A +LA D++A +G + ++
Sbjct: 255 HSLDKPEVVARILQAEGRGATMIFCRTKRTAQKLA------DDLAERG----FRVGAIHG 304
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
DL R K ++ FR +D++VA+D ARGIDV+++ VINY+ P++ K Y+HRIGRT
Sbjct: 305 DLGQGAREKSLKAFRSGDVDVLVATDVAARGIDVDDVTHVINYQCPEDEKTYVHRIGRTG 364
Query: 216 RGGRQGTSVTLV 227
R GR G +VTLV
Sbjct: 365 RAGRTGVAVTLV 376
>gi|225457931|ref|XP_002273443.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 28-like [Vitis
vinifera]
Length = 732
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 39/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LS+ +P + P++
Sbjct: 300 PKRRQTMLFSATMTEEVDELVKLSMTKPMRLAA----------DPSTKR----------- 338
Query: 80 GKFTTPAELSEKLTTCSTNL---KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E++ + VL L K + F T Q AHRL ++L +
Sbjct: 339 -----PATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKAIIFSGTKQAAHRL-KILFGL 392
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + VI
Sbjct: 393 -------AGFKA--AELHGNLTQVQRLDALELFRKQQVDFLIATDVAARGLDIIGVQTVI 443
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY P ++ Y+HR+GRTAR GR+G +VT VT ++
Sbjct: 444 NYACPRDLTSYVHRVGRTARAGREGYAVTFVTDND 478
>gi|167763057|ref|ZP_02435184.1| hypothetical protein BACSTE_01423 [Bacteroides stercoris ATCC
43183]
gi|167699397|gb|EDS15976.1| DEAD/DEAH box helicase [Bacteroides stercoris ATCC 43183]
Length = 430
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 103/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ ++L Q L P V
Sbjct: 178 PKERQTIMFSATMPAKIQQLAQNILHNPAEVKLAV------------------------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYICYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVAKALKQM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|291001239|ref|XP_002683186.1| predicted protein [Naegleria gruberi]
gi|284096815|gb|EFC50442.1| predicted protein [Naegleria gruberi]
Length = 610
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 107/213 (50%), Gaps = 17/213 (7%)
Query: 29 SATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-FTTPAE 87
SAT++ KL + L +P+ FT + PA + S+E + +L +GK + P
Sbjct: 354 SATITSHAGKLDIIRLNRPQFFTYLA-PA-----KLRSAEDMSTSLDDPLVGKKYYIPDT 407
Query: 88 LSEKLTTCSTNLKPLVLYQLI--RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
L++ + KPL L L+ K + L F N +Q AHRL LL + +
Sbjct: 408 LAQFIVKYEAVTKPLYLIALLLDNKCRSKKTLVFCNDSQTAHRLNLLLETAVSEGAFNSK 467
Query: 146 TKMNIA-------EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
IA Y + K + I+ FR+ ++++ +D + RG D+E +D VINY
Sbjct: 468 DAFGIAPELNTKFSEYYNPKDKKSTTILNNFRKGHFNVLICTDVIGRGFDIE-VDFVINY 526
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+AP +K YIHRIGRTAR ++GTS T +T E
Sbjct: 527 DAPLTLKTYIHRIGRTARAEKEGTSFTFLTGPE 559
>gi|222423183|dbj|BAH19569.1| AT4G16630 [Arabidopsis thaliana]
Length = 686
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 41/213 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P ++ +P+
Sbjct: 342 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA--DPSAR-------------------- 379
Query: 80 GKFTTPAELSEKLT----TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
P L+E++ T N + VL L + V+ F T Q AHRL ++L
Sbjct: 380 ----RPPGLTEEVVRIRRTREAN-QEAVLLSLCTRTFKSKVIIFSGTKQAAHRL-KILFG 433
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 434 L-------AGLKA--AELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 484
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY P I Y+HR+GRTAR GR+G +VT VT
Sbjct: 485 INYACPREIDSYVHRVGRTARAGREGYAVTFVT 517
>gi|392597372|gb|EIW86694.1| DEAD-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 750
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 112/209 (53%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ ++L ++SL +P +LF V+P T + G
Sbjct: 355 PKSRQTMLFSATMTDSVDELVKMSLNKPVRLF---VDPRRT--------------TARGL 397
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ +F +EK T S+ +L L ++ GV+ F + + AH++ + +D
Sbjct: 398 VQEFVRV--RAEKETERSS-----LLVALCQRTFTSGVIVFFRSKKLAHQMRIIFRMLD- 449
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
M E++ DL +QR + +Q FR +++ ++A+D +RG+D++ I+ VINY
Sbjct: 450 ---------MKCEELHGDLTQEQRLQALQLFRDGQVNFLMATDLASRGLDIKGIETVINY 500
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P+ +Y+HR+GRTAR G+ G S+TLV
Sbjct: 501 DMPNQAAQYLHRVGRTARAGKTGRSLTLV 529
>gi|349579719|dbj|GAA24880.1| K7_Drs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 756
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 411 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 458
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 459 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 506
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 507 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 556
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 557 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 587
>gi|401624697|gb|EJS42747.1| drs1p [Saccharomyces arboricola H-6]
Length = 747
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 402 PSNRQNLLFSATMNSKIKSLVSLSLKRP--VRIMIDPP----------KQAAARLTQEFV 449
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 450 ------------RIRKRDHLKPSLLFNLIRKLDPMGQKRIVVFVARKETAHRLRIVMGLL 497
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M + E++ L +QR + +F+ ++ ++V +D +RG+D+ I+VV+
Sbjct: 498 G----------MGVGELHGSLTQEQRLDSVNKFKNLEVPVLVCTDLASRGLDIPKIEVVV 547
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVTLV
Sbjct: 548 NYDMPKSYEIYLHRVGRTARAGREGRSVTLV 578
>gi|323303947|gb|EGA57727.1| Drs1p [Saccharomyces cerevisiae FostersB]
Length = 755
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 410 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 457
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 458 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 505
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 506 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 555
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 556 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 586
>gi|319405915|emb|CBI79547.1| ATP-dependent RNA helicase [Bartonella sp. AR 15-3]
Length = 430
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 89/161 (55%), Gaps = 15/161 (9%)
Query: 71 ADNLSSG-----FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQG 125
ADNL + + TT AE+++ L ST+ K VL +L+ A+ V+ F+ T G
Sbjct: 203 ADNLLKKPVKIEVVSQGTTAAEITQVLYCVSTSEKKSVLGKLLTNPALASVIVFIRTKHG 262
Query: 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLAR 185
A D+VA A T ++A ++ + + R + +++FR + ++VA+D AR
Sbjct: 263 A----------DSVARSLAKTGYSVATIHGNKSQNARQRALKDFREGLVRVLVATDIAAR 312
Query: 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
GID+ I VINY+ PDN + Y+HRIGRT R G ++TL
Sbjct: 313 GIDIPRISHVINYDLPDNAESYVHRIGRTGRNSASGDAITL 353
>gi|259147982|emb|CAY81231.1| Drs1p [Saccharomyces cerevisiae EC1118]
Length = 754
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 409 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 456
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 457 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 504
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 505 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 554
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 555 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|160380652|sp|A7A0P8.1|DRS1_YEAS7 RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|151941161|gb|EDN59539.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190406035|gb|EDV09302.1| ATP dependent RNA helicase [Saccharomyces cerevisiae RM11-1a]
gi|207343227|gb|EDZ70754.1| YLL008Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 754
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 409 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 456
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 457 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 504
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 505 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 554
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 555 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 585
>gi|6323021|ref|NP_013093.1| Drs1p [Saccharomyces cerevisiae S288c]
gi|1706521|sp|P32892.2|DRS1_YEAST RecName: Full=ATP-dependent RNA helicase DRS1; AltName:
Full=Deficiency of ribosomal subunits protein 1
gi|1360171|emb|CAA97452.1| DRS1 [Saccharomyces cerevisiae]
gi|1495215|emb|CAA62783.1| L1345/DRS1 protein [Saccharomyces cerevisiae]
gi|285813414|tpg|DAA09310.1| TPA: Drs1p [Saccharomyces cerevisiae S288c]
Length = 752
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 407 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 454
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 455 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 502
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 503 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 552
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 553 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>gi|256272311|gb|EEU07295.1| Drs1p [Saccharomyces cerevisiae JAY291]
Length = 751
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 406 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPP----------KKAATKLTQEFV 453
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 454 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 501
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 502 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 551
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 552 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 582
>gi|392297967|gb|EIW09066.1| Drs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 748
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P T+ L+ F+
Sbjct: 403 PSNRQNLLFSATMNSKIKSLVSLSLKKP--VRIMIDPPKKAATK----------LTQEFV 450
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AHRL ++ +
Sbjct: 451 ------------RIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGLL 498
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 499 G----------MSVGELHGSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVI 548
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 549 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 579
>gi|401840824|gb|EJT43489.1| DRS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 758
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 413 PSSRQNLLFSATMNSKIKSLVSLSLKRP--VRIMIDPP----------KKAATKLTQEFV 460
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +++ LIRK A + ++ FV + AHRL ++ +
Sbjct: 461 ------------RIRKRDHLKPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMGLL 508
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 509 G----------MSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVI 558
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 559 NYDMPKSHEVYLHRVGRTARAGREGRSVTFV 589
>gi|428204428|ref|YP_007083017.1| DNA/RNA helicase [Pleurocapsa sp. PCC 7327]
gi|427981860|gb|AFY79460.1| DNA/RNA helicase, superfamily II [Pleurocapsa sp. PCC 7327]
Length = 472
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T Q A L L AG ++ E + DL QR +++Q FR K
Sbjct: 243 ESAIIFVRTKQTAAELTSKLQE--------AG--QSVDEYHGDLSQIQRERLVQRFREGK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ LVVA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT++ LV
Sbjct: 293 VRLVVATDIAARGLDVENLSHVINYDLPDNTETYIHRIGRTGRAGKTGTAIALV 346
>gi|282860072|ref|ZP_06269153.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
JCVIHMP010]
gi|424899483|ref|ZP_18323025.1| DNA/RNA helicase, superfamily II [Prevotella bivia DSM 20514]
gi|282587160|gb|EFB92384.1| ATP-dependent RNA helicase DeaD family protein [Prevotella bivia
JCVIHMP010]
gi|388591683|gb|EIM31922.1| DNA/RNA helicase, superfamily II [Prevotella bivia DSM 20514]
Length = 589
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 39/210 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q ++FSAT+ E L + L +P++ V
Sbjct: 179 PSTCQTIMFSATMPSKIEDLAKTLLKEPEMVKLAV------------------------- 213
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ + + + V+ F + Q ++A L+
Sbjct: 214 ---SKPAEKIQQSAYVCYETQKIEIIKDIFKAGDLHRVIIFSGSKQKVKQIASSLNR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL QR+ ++ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQAQRDDVMFKFKSGQIDVLVATDIVARGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ P +++ Y+HRIGRTAR R G ++T V
Sbjct: 321 DVPHDVEDYVHRIGRTARADRDGVAITFVN 350
>gi|397664785|ref|YP_006506323.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
gi|395128196|emb|CCD06401.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila]
Length = 566
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 155 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 204
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 205 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 254
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 255 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 314
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 315 RAGRSGVTILFVTPKE 330
>gi|242007312|ref|XP_002424485.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
gi|212507903|gb|EEB11747.1| DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus
corporis]
Length = 669
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ E L +SL P K+F S+++ +NL FI
Sbjct: 335 QTMLFSATMTTAVEDLASVSLSNPVKIFVD-------------SNQSVTNNLRQEFI--- 378
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ K VL L+R+ + FV T AH+L LL ++
Sbjct: 379 --------RIRKGREGDKEAVLAALVRRTFRANCIIFVATKSQAHKLRILLGFLN----- 425
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
M E++ +L+ +R ++ F+ ++D++VA+D ARG+D+ + VINY+ P
Sbjct: 426 -----MKAGELHGNLRQPERLDTLKRFKNGELDILVATDVAARGLDISGVKTVINYDLPM 480
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHR+GRTAR GR G SV+L E
Sbjct: 481 TFEHYIHRVGRTARAGRSGISVSLACESE 509
>gi|317477042|ref|ZP_07936284.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
gi|316906835|gb|EFV28547.1| DEAD/DEAH box helicase [Bacteroides eggerthii 1_2_48FAA]
Length = 428
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C N K +++ L + + V+ F ++ + + L +
Sbjct: 213 SKPAEKIVQAAYVCYENQKLGIIHSLFAEQTPERVIIFASSKLKVKEVTKALKQM----- 267
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY+ P
Sbjct: 268 -----KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDVP 322
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR G ++T V E
Sbjct: 323 HDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|157961286|ref|YP_001501320.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157846286|gb|ABV86785.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 442
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/213 (32%), Positives = 110/213 (51%), Gaps = 40/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT PE++ +L+ L + VE Q SSE
Sbjct: 202 PKTKQTLLFSATF---PEEVRELT---DSLLNNPVE------VQLQSSEE---------- 239
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ L +++ T + N K +L QLI+ + Q VL F + +RLA+ L +
Sbjct: 240 ------STLVQRVITVNRNRKTALLAQLIKDNQWQQVLIFASAKYSCNRLAQKLEN---- 289
Query: 140 ATKGAGTKMNIAEVY-SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
AG AEV+ SD RN++++EF+ +I +++A+D ARGID+E + +VIN+
Sbjct: 290 ----AGI---TAEVFHSDKGQGARNRVLEEFKSGEISVLIATDIAARGIDIEKLPIVINF 342
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
E P + Y+HRIGR+ R G G +++L++ E
Sbjct: 343 ELPRSPVDYMHRIGRSGRAGEAGLAMSLISHDE 375
>gi|145357256|ref|XP_001422836.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583080|gb|ABP01195.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 710
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 39/211 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSATL+ E L LS+ P LS+ +
Sbjct: 324 PKKRQTLLFSATLTAGVEALASLSMKNPA------------------------RLSADTL 359
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G TTP L E KL + K L ++ + + + F T Q AHRL ++
Sbjct: 360 G--TTPKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLS 417
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D + E++ D+ QR + EFR + ++A+D ARG+D+ ++D VI
Sbjct: 418 D----------IKAGELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVI 467
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++AP + Y+HR+GRTAR G++GT++T +
Sbjct: 468 SFDAPKTLASYLHRVGRTARAGKKGTALTFM 498
>gi|54295187|ref|YP_127602.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
gi|53755019|emb|CAH16507.1| hypothetical protein lpl2267 [Legionella pneumophila str. Lens]
Length = 589
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|254580545|ref|XP_002496258.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
gi|238939149|emb|CAR27325.1| ZYRO0C14234p [Zygosaccharomyces rouxii]
Length = 494
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL +P + K+ T
Sbjct: 252 LFSATMTSKIDKLQRASLTEP--------------------------VKCAVSNKYQTVD 285
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L + LK L L+ ++ + V+ F T A RL+ L + ++
Sbjct: 286 TLVQTLMVVPSGLKNTYLIYLLNENIGKTVIIFTRTKANAERLSALCNLLE--------- 336
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
N ++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 337 -FNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 395
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 396 YIHRVGRTARAGRSGKSISLVSQYD 420
>gi|154490238|ref|ZP_02030499.1| hypothetical protein PARMER_00470 [Parabacteroides merdae ATCC
43184]
gi|423721833|ref|ZP_17696009.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
gi|154089130|gb|EDN88174.1| DEAD/DEAH box helicase [Parabacteroides merdae ATCC 43184]
gi|409242846|gb|EKN35605.1| hypothetical protein HMPREF1078_00072 [Parabacteroides merdae
CL09T00C40]
Length = 427
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L K Q V+ F ++ LA L +
Sbjct: 216 PETIMQTAYVCYDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTLKRM-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ +ID++VA+D ++RGID+ +I +VIN++ P +
Sbjct: 268 --KFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHDP 325
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T ++T E
Sbjct: 326 EDYVHRIGRTARGTNGEGLAITFISTEE 353
>gi|54298236|ref|YP_124605.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
gi|53752021|emb|CAH13447.1| hypothetical protein lpp2294 [Legionella pneumophila str. Paris]
Length = 589
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|423347930|ref|ZP_17325615.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
gi|409215416|gb|EKN08417.1| hypothetical protein HMPREF1060_03287 [Parabacteroides merdae
CL03T12C32]
Length = 427
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L K Q V+ F ++ LA L +
Sbjct: 216 PETIMQTAYVCYDMQKLRILEDLFSKSRPQRVIIFSSSKMKVKELASTLKRM-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ +ID++VA+D ++RGID+ +I +VIN++ P +
Sbjct: 268 --KFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHDP 325
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T ++T E
Sbjct: 326 EDYVHRIGRTARGTNGEGLAITFISTEE 353
>gi|365759503|gb|EHN01286.1| Drs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 109/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT++ + L LSL +P +++P + A L+ F+
Sbjct: 392 PSSRQNLLFSATMNSKIKSLVSLSLKRP--VRIMIDPP----------KKAATKLTQEFV 439
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +++ LIRK A + ++ FV + AHRL ++ +
Sbjct: 440 ------------RIRKRDHLKPALIFNLIRKLDPMAQKRIVVFVARKESAHRLRIIMGLL 487
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 488 G----------MSVGELHGSLTQEQRLDSVSKFKNLEVPVLICTDLASRGLDIPKIEVVI 537
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 538 NYDMPKSHEVYLHRVGRTARAGREGRSVTFV 568
>gi|307611190|emb|CBX00835.1| hypothetical protein LPW_25391 [Legionella pneumophila 130b]
Length = 589
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|92112945|ref|YP_572873.1| DEAD/DEAH box helicase [Chromohalobacter salexigens DSM 3043]
gi|91796035|gb|ABE58174.1| DEAD/DEAH box helicase-like protein [Chromohalobacter salexigens
DSM 3043]
Length = 452
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 36/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T PS+ Q LLFSAT S + +L + + P + V P
Sbjct: 174 TLPSKRQNLLFSATFSQEIRQLAKGLVNDPVEIS--VTP--------------------- 210
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ TT +++ + KP +L LI +H Q VL F+ T GA+RL+R H++
Sbjct: 211 ---RNTTAETVTQWIHPVDKARKPALLTHLIHEHQWQQVLVFMRTKHGANRLSR---HLE 264
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ A ++ + + R K + F+ +I ++VA+D ARG+D+ + V+N
Sbjct: 265 EAG-------IEAAAIHGNKSQNARTKALDGFKSGEIRVLVATDIAARGLDINQLPQVVN 317
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E P+ + Y+HRIGRT R G G +++LV E
Sbjct: 318 FELPNVAEDYVHRIGRTGRAGASGHAISLVCAEE 351
>gi|52842555|ref|YP_096354.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378778243|ref|YP_005186682.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52629666|gb|AAU28407.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364509059|gb|AEW52583.1| ATP-dependent RNA helicase [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 589
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|223590217|sp|A5DID7.2|HAS1_PICGU RecName: Full=ATP-dependent RNA helicase HAS1
gi|190346774|gb|EDK38940.2| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
6260]
Length = 569
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL L+ +VV P + + AD L G++
Sbjct: 286 QSMLFSATQTTKVEDLARISLRAGPLYINVV---------PETEVSTADGLEQGYV---- 332
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TC ++++ L+L+ +R++ + ++ F+++ LL++ID
Sbjct: 333 ----------TCDSDMRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELLNYID------ 376
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + +++ K +R EF K +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 377 ----LPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDD 432
Query: 204 IKKYIHRIGRTARG-GRQGTSVTLVTTHE 231
+ YIHR+GRTARG G +G S+ +T E
Sbjct: 433 PRDYIHRVGRTARGTGGKGKSLMFLTPSE 461
>gi|353237187|emb|CCA69166.1| related to DRS1-RNA helicase of the DEAD box family [Piriformospora
indica DSM 11827]
Length = 767
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 109/211 (51%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL +P +LF V+P A A L
Sbjct: 351 SCPRSRQTMLFSATMTDSVDELVKMSLNKPVRLF---VDP----------KRATAKGLVQ 397
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
F+ ++ + + +L L ++ + V+ F + + AH++ + +
Sbjct: 398 EFV-----------RVKAGRESERAAILVTLCKRTFRERVIIFFRSKKLAHQMRIMFGLL 446
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D M E++ DL +QR +Q FR K+D ++A+D +RG+D++ I+ VI
Sbjct: 447 D----------MRADELHGDLTQEQRLTSLQAFRDGKVDYLMATDLASRGLDIKGIETVI 496
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G+ G SVTLV
Sbjct: 497 NYDMPGQLAQYLHRVGRTARAGKNGRSVTLV 527
>gi|30683736|ref|NP_193396.3| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
gi|75338927|sp|Q9ZRZ8.1|RH28_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|3776027|emb|CAA09214.1| RNA helicase [Arabidopsis thaliana]
gi|110736657|dbj|BAF00292.1| RNA helicase like protein [Arabidopsis thaliana]
gi|332658378|gb|AEE83778.1| DEAD-box ATP-dependent RNA helicase 28 [Arabidopsis thaliana]
Length = 789
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 41/213 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P ++ +P+
Sbjct: 342 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA--DPSAR-------------------- 379
Query: 80 GKFTTPAELSEKLT----TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
P L+E++ T N + VL L + V+ F T Q AHRL ++L
Sbjct: 380 ----RPPGLTEEVVRIRRTREAN-QEAVLLSLCTRTFKSKVIIFSGTKQAAHRL-KILFG 433
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 434 L-------AGLKA--AELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 484
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY P I Y+HR+GRTAR GR+G +VT VT
Sbjct: 485 INYACPREIDSYVHRVGRTARAGREGYAVTFVT 517
>gi|148359886|ref|YP_001251093.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|296107936|ref|YP_003619637.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
gi|148281659|gb|ABQ55747.1| ATP-dependent RNA helicase [Legionella pneumophila str. Corby]
gi|295649838|gb|ADG25685.1| ATP-dependent RNA helicase DeaD [Legionella pneumophila 2300/99
Alcoy]
Length = 589
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PEK Q++LF + + + A T P S E + T + ++
Sbjct: 178 PEK-KQMALFSATMPYRIRQIANTYLNDPASIEIRMET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SVHQKPDALIRVLEVEDYQGVIVFVRTKSSTEEVAELLQQ----------HGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +F++ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQSLRERIIAQFKQGAIDILVATDVAARGLDVERVTHVINYDMPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVTILFVTPKE 353
>gi|171057308|ref|YP_001789657.1| DEAD/DEAH box helicase [Leptothrix cholodnii SP-6]
gi|170774753|gb|ACB32892.1| DEAD/DEAH box helicase domain protein [Leptothrix cholodnii SP-6]
Length = 479
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P Q LLFSAT S + +KL Q S Q L V P T
Sbjct: 189 ILSYLPKTRQTLLFSATFSPEIKKLAQ-SYLQDPLLVEVARPNATA-------------- 233
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ ++ + + + K + ++R+ ++ + FVN+ GA RLAR
Sbjct: 234 -----------TNVEQRFYSVTDDDKRRTVLHILRERSITQAIVFVNSKLGAARLARSFE 282
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
D + T ++ D D+R K + F+R ++D++VA+D ARG+D+ ++
Sbjct: 283 R-DGLRTSA---------LHGDKSQDERLKALDAFKRGEVDVLVATDVAARGLDIADLPA 332
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +V+LV+
Sbjct: 333 VFNFDIPFNAEDYVHRIGRTGRAGASGLAVSLVS 366
>gi|326800907|ref|YP_004318726.1| DEAD/DEAH box helicase [Sphingobacterium sp. 21]
gi|326551671|gb|ADZ80056.1| DEAD/DEAH box helicase domain protein [Sphingobacterium sp. 21]
Length = 420
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+ P+K+ LF L + + +QP A+ + +
Sbjct: 177 PEQRQTLLFSATM---PQKIR---LFAKALLKNP-QQVNIAISQP------AEKIKQQYY 223
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
F +K+T +L ++ + ++ F +T + L + L D
Sbjct: 224 RTFD-----EQKVT---------LLKHILSTDSFYSIIIFCSTKENVKLLEKELFKND-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ + +SDL+ D+R +I+ +F+ RK++++V +D L+RGID+E ID+V+NY+
Sbjct: 268 --------LKVRSFHSDLQQDEREQILLDFKNRKLNILVGTDVLSRGIDIEGIDLVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + YIHRIGRTAR R GT++T V +
Sbjct: 320 VPGDPEDYIHRIGRTARAERTGTAITFVNNRD 351
>gi|319404441|emb|CBI78044.1| ATP-dependent RNA helicase [Bartonella rochalimae ATCC BAA-1498]
Length = 415
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT AE+++ L ST+ K +L +L+ A+ V+ F+ T GA D+VA
Sbjct: 220 TTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGA----------DSVARS 269
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
A T ++A ++ + + R ++ FR + ++VA+D ARGID+ I VINY+ PD
Sbjct: 270 LAKTGYSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPD 329
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
N + Y+HRIGRT R G G ++TL
Sbjct: 330 NAESYVHRIGRTGRNGASGYAITL 353
>gi|384487383|gb|EIE79563.1| hypothetical protein RO3G_04268 [Rhizopus delemar RA 99-880]
Length = 546
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 41 QLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLK 100
Q SLF + V E A + P GA N ++ I + E L T + K
Sbjct: 319 QKSLFSATFSSHVEELAKSVMKDPIRIVIGAKNAATDTIKQ--------ELLFTGTEAGK 370
Query: 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160
+ L QLI+K VL FV Q R L H + +N+ ++SD
Sbjct: 371 RIALRQLIQKGLKPPVLIFV---QSIDRAKELFHEL-------VFDGINVEVIHSDRTKA 420
Query: 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220
QR+KII FR KI +++A+D +ARG+D + +++VINY+ P + YIHRIGRT R GR
Sbjct: 421 QRDKIIDSFRVGKIWVLIATDLMARGLDFKGVNLVINYDFPQTVASYIHRIGRTGRAGRT 480
Query: 221 GTSVTLVT 228
G +VT T
Sbjct: 481 GEAVTYYT 488
>gi|337755500|ref|YP_004648011.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
gi|336447105|gb|AEI36411.1| Cold-shock DEAD-box protein A [Francisella sp. TX077308]
Length = 572
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 97/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + Q L P K
Sbjct: 185 QRLLFSATIPTDIADIIQEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ K
Sbjct: 219 TANTVTQKFMVIKGFRKIDALDRLLEVEETDGVIIFVKTKTSTIEVA------DNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|223937377|ref|ZP_03629282.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
gi|223893928|gb|EEF60384.1| DEAD/DEAH box helicase domain protein [bacterium Ellin514]
Length = 437
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 103/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSATLS + E L PK I
Sbjct: 177 PRKRQTLLFSATLSREIEGLTHEFQHAPKTVQ---------------------------I 209
Query: 80 GKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
G+ + PAE +L +LKP +L L+R +M VL F A R+AR N
Sbjct: 210 GRRSNPAETVTQLVYEVPKHLKPALLVHLLRDPSMDMVLVFSRMKHSADRIAR------N 263
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ KG T A ++S+ +QR + +++F+ + ++VA+D ARGIDV+ I V+NY
Sbjct: 264 LENKGIKT----ATLHSNRSQNQRLRALKDFKSGAVRVLVATDIAARGIDVDGISHVVNY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRT R G +++ VT+ +
Sbjct: 320 DFPMHAEDYVHRIGRTGRAHAVGDAISFVTSED 352
>gi|150864695|ref|XP_001383630.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits [Scheffersomyces stipitis CBS 6054]
gi|149385951|gb|ABN65601.2| nucleolar DEAD-box protein required for synthesis of 60S ribosomal
subunits, partial [Scheffersomyces stipitis CBS 6054]
Length = 672
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 37/214 (17%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
L ++ Q LLFSAT++ + L QLSL +P +++P T T+ L+
Sbjct: 333 LIPKNKRQTLLFSATMNTKIQDLIQLSLQRP--VRIMIDPPKTAATK----------LTQ 380
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRK--HAMQG-VLCFVNTAQGAHRLARLL 133
F+ +LKP +L+QL++K A Q ++ FV+ + AH+L +L
Sbjct: 381 EFV------------RIRKRDHLKPALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVL 428
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+ M ++E++ L +QR + +F++ + +++ +D ARG+D+ I+
Sbjct: 429 GLLG----------MKVSELHGSLTQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIE 478
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+VINY+ P + + Y+HR+GRTAR GR GTS++ V
Sbjct: 479 IVINYDMPKSHEVYLHRVGRTARAGRDGTSISFV 512
>gi|297800452|ref|XP_002868110.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
gi|297313946|gb|EFH44369.1| hypothetical protein ARALYDRAFT_493213 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 41/213 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + ++L +LSL +P ++ +P+
Sbjct: 345 PKRRQTMLFSATMTEEVKELVKLSLNKPLRLSA--DPSAR-------------------- 382
Query: 80 GKFTTPAELSEKLT----TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
P L+E++ T N + VL L + V+ F T Q AHRL ++L
Sbjct: 383 ----RPPGLTEEVVRIRRTREAN-QEAVLLSLCTRTFKSKVIIFSGTKQAAHRL-KILFG 436
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ AG K AE++ +L QR ++ FR++++D ++A+D ARG+D+ + V
Sbjct: 437 L-------AGLKA--AELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQTV 487
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY P I Y+HR+GRTAR GR+G +VT VT
Sbjct: 488 INYACPREIDSYVHRVGRTARAGREGYAVTFVT 520
>gi|145353647|ref|XP_001421118.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581354|gb|ABO99411.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 755
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 101/211 (47%), Gaps = 39/211 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSATL+ E L LS+ P LS+ +
Sbjct: 324 PKKRQTLLFSATLTAGVEALASLSMKNPA------------------------RLSADTL 359
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G TTP L E KL + K L ++ + + + F T Q AHRL ++
Sbjct: 360 G--TTPKRLVEEVLKLKPNQSAQKEAFLMAIVSRSYDKSTIIFSQTKQEAHRLKIIMGLS 417
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D + E++ D+ QR + EFR + ++A+D ARG+D+ ++D VI
Sbjct: 418 D----------IKAGELHGDMTQTQRLAALDEFRTGTVTHLIATDVAARGLDIPSVDAVI 467
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++AP + Y+HR+GRTAR G++GT++T +
Sbjct: 468 SFDAPKTLASYLHRVGRTARAGKKGTALTFM 498
>gi|146418687|ref|XP_001485309.1| hypothetical protein PGUG_03038 [Meyerozyma guilliermondii ATCC
6260]
Length = 569
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL L+ +VV P + + AD L G++
Sbjct: 286 QSMLFSATQTTKVEDLARISLRAGPLYINVV---------PETEVSTADGLEQGYV---- 332
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TC ++++ L+L+ +R++ + ++ F+++ LL++ID
Sbjct: 333 ----------TCDSDMRFLLLFSFLRRNIKKKIIVFLSSCNCVKYFGELLNYID------ 376
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + +++ K +R EF K +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 377 ----LPVLDLHGKQKQQKRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIIQFDPPDD 432
Query: 204 IKKYIHRIGRTARG-GRQGTSVTLVTTHE 231
+ YIHR+GRTARG G +G S+ +T E
Sbjct: 433 PRDYIHRVGRTARGTGGKGKSLMFLTPSE 461
>gi|293373074|ref|ZP_06619442.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
gi|292631960|gb|EFF50570.1| DEAD/DEAH box helicase [Bacteroides ovatus SD CMC 3f]
Length = 422
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 108/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL+ T + P+ + +P S+ + + ++
Sbjct: 178 PKERQTIMFSATM---PAKIQQLA------NTILNNPS---EIKPAVSKPAEKIIQAAYV 225
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C N K ++ L + V+ F ++ +A+ L +
Sbjct: 226 ---------------CYENQKLGIIRSLFMDEVPERVIVFASSKIKVKEVAKALKSM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VIN++
Sbjct: 268 -------KLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGIDIDDIRLVINFD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRTAR G ++T ++ E
Sbjct: 321 VPHDSEDYVHRIGRTARANNDGVALTFISEKE 352
>gi|332662165|ref|YP_004444953.1| DEAD/DEAH box helicase [Haliscomenobacter hydrossis DSM 1100]
gi|332330979|gb|AEE48080.1| DEAD/DEAH box helicase domain protein [Haliscomenobacter hydrossis
DSM 1100]
Length = 451
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 106/210 (50%), Gaps = 39/210 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+ PE + +L+ + T E
Sbjct: 177 PQKRQTLLFSATM---PESVMKLA----RQLTHNAESVSIA------------------- 210
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE ++++ K ++ +L++ Q ++ F ++ L LH
Sbjct: 211 --LSKPAEGVTQRAYVVYEEQKLQLVTELLKDRKGQRIVVFCSSKASVSSLYSKLHR--- 265
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+++ ++ SD++ DQR + + FR KID++VA+D ++RGIDV+ ID+V+NY
Sbjct: 266 -------KNLSVGQMSSDVEQDQREETMLAFRNSKIDIIVATDVISRGIDVDGIDLVVNY 318
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ P + + Y+HR+GRTAR R+G ++TLV+
Sbjct: 319 DVPRDPEDYVHRVGRTARAERKGEAITLVS 348
>gi|445118247|ref|ZP_21378972.1| hypothetical protein HMPREF0662_02039 [Prevotella nigrescens F0103]
gi|444839625|gb|ELX66682.1| hypothetical protein HMPREF0662_02039 [Prevotella nigrescens F0103]
Length = 570
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E+L L P + V
Sbjct: 179 PKTCQTIMFSATMPKKIEELAGTLLKNPAIIKLAV------------------------- 213
Query: 80 GKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ ++ C K ++ + + + +Q V+ F + Q ++A L+
Sbjct: 214 ---SKPADKIHQIAYVCYETQKMAIVKNIFKANHLQRVIIFSGSKQKVKQIASSLNQ--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N +++SDL QR++++ +F+ +ID++VA+D L+RGID+++I +VINY
Sbjct: 268 -------KKINCGQMHSDLDQAQRDEMMFKFKSGQIDVLVATDILSRGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++TL++ +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGVAITLISDDD 353
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT+S D L + P+ F VV
Sbjct: 176 PSERQTLLFSATMSRDILNLTRKYQNNPE-FLKVVHQ----------------------- 211
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ T P E+ + +K +L +L+ H + L F NT + R+ +L+ H+
Sbjct: 212 -ELTVP-EIQQIYFEVKEKMKLELLSRLLDIHNFKLSLVFCNTKR---RVDKLVTHLQIR 266
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G ++ D+ QR++++ +FR KI+++VA+D ARGIDVEN++ V NY+
Sbjct: 267 GYAADG-------LHGDMTQSQRDRVMAKFRNGKIEVLVATDVAARGIDVENVEAVFNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++ + Y+HRIGRT R G+ G + T V+ E
Sbjct: 320 VPNDDEYYVHRIGRTGRAGKTGMAFTFVSGKE 351
>gi|452852964|ref|YP_007494648.1| ATP-dependent RNA helicase rhlE [Desulfovibrio piezophilus]
gi|451896618|emb|CCH49497.1| ATP-dependent RNA helicase rhlE [Desulfovibrio piezophilus]
Length = 373
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 99/211 (46%), Gaps = 41/211 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+ +D +KL L PK +T P +S
Sbjct: 174 PDKRQNLLFSATMPNDIKKLADGILVNPKRVQE-------ANTVPVTS------------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH--ID 137
+ T T+LK +L +L+ K + VL F T A L+R L+ D
Sbjct: 215 --------VGHAFYTTQTHLKNDILEKLLSKAEHESVLIFTRTKHKAKNLSRKLNKDGYD 266
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ +G ++ QR + + FR+ + +++VA+D ARGID + I VIN
Sbjct: 267 STFLQG------------NMSQSQRQRALNGFRQGQFNIMVATDIAARGIDCDRISHVIN 314
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
Y+ PD ++ Y HRIGRT R GR G +V+ VT
Sbjct: 315 YDMPDTVETYTHRIGRTGRAGRSGQAVSFVT 345
>gi|340349082|ref|ZP_08672106.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
nigrescens ATCC 33563]
gi|339612648|gb|EGQ17451.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
nigrescens ATCC 33563]
Length = 570
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E+L L P + V
Sbjct: 179 PKTCQTIMFSATMPKKIEELAGTLLKNPAIIKLAV------------------------- 213
Query: 80 GKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ ++ C K ++ + + + +Q V+ F + Q ++A L+
Sbjct: 214 ---SKPADKIHQIAYVCYETQKMAIVKNIFKANHLQRVIIFSGSKQKVKQIASSLNQ--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N +++SDL QR++++ +F+ +ID++VA+D L+RGID+++I +VINY
Sbjct: 268 -------KKINCGQMHSDLDQAQRDEMMFKFKSGQIDVLVATDILSRGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++TL++ +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGVAITLISDDD 353
>gi|388854481|emb|CCF51868.1| related to DRS1-RNA helicase of the DEAD box family [Ustilago
hordei]
Length = 935
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 49/229 (21%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-------------KLFTSVVEPAGTG---------D 61
Q +LFSAT++ D E+L +LSL +P KL V GT D
Sbjct: 510 QTMLFSATMTDDVEQLVRLSLKRPVRLFVDPKRTTAKKLVQEFVRVRGTASAGVAGTVAD 569
Query: 62 TQPTSSEA---GADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLC 118
P++S A A+ S G G+ + A+ +P +L L + V+
Sbjct: 570 EAPSTSNAETSSAETSSGG--GRKSEDAQ------------RPALLLALCTRTFTSQVII 615
Query: 119 FVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178
FV + + AH+L + + ++ E++ DL +QR + FR K+D ++
Sbjct: 616 FVRSKKLAHQLKIVFGLLG----------LSAGELHGDLSQEQRIDALTAFRDGKVDFLI 665
Query: 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
A+D +RG+D++ + VINY+ P + Y+HR+GRTAR GR G +VTLV
Sbjct: 666 ATDLASRGLDIKGVQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLV 714
>gi|238028205|ref|YP_002912436.1| ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
gi|237877399|gb|ACR29732.1| Putative ATP-dependent RNA helicase 2 [Burkholderia glumae BGR1]
Length = 480
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T T P + E N
Sbjct: 190 PKARQTLLFSATFSPEIKKL-----------------AATYLTNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + + K + +LIR A++ V+ F N+ GA RLARLL V
Sbjct: 227 ---ATATNVTQIVYDIAEGDKQAAVVKLIRDRALKQVIVFCNSKIGASRLARLLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + ++ F+R +++ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALEAFKRGEVEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFSAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|158514833|sp|A3LSN3.3|DRS1_PICST RecName: Full=ATP-dependent RNA helicase DRS1
Length = 741
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 114/214 (53%), Gaps = 37/214 (17%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
L ++ Q LLFSAT++ + L QLSL +P +++P T T+ L+
Sbjct: 396 LIPKNKRQTLLFSATMNTKIQDLIQLSLQRP--VRIMIDPPKTAATK----------LTQ 443
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRK--HAMQG-VLCFVNTAQGAHRLARLL 133
F+ +LKP +L+QL++K A Q ++ FV+ + AH+L +L
Sbjct: 444 EFV------------RIRKRDHLKPALLFQLLKKLDPAQQSRIVVFVSRKESAHKLRIVL 491
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+ M ++E++ L +QR + +F++ + +++ +D ARG+D+ I+
Sbjct: 492 GLLG----------MKVSELHGSLTQEQRLNNVNDFKKLIVPVLICTDLAARGLDIPKIE 541
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+VINY+ P + + Y+HR+GRTAR GR GTS++ V
Sbjct: 542 IVINYDMPKSHEVYLHRVGRTARAGRDGTSISFV 575
>gi|336311025|ref|ZP_08565993.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
gi|335865440|gb|EGM70463.1| ATP-dependent RNA helicase [Shewanella sp. HN-41]
Length = 409
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL L + L +PK E N
Sbjct: 178 PAKRQTLLFSATLDDAIFSLSKSLLREPKWI-----------------EVAKRN------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT ++ +++ ++ K + LIR VL F T QG +LA L+ +D +
Sbjct: 215 ---TTATQVEQRVYAIDSDRKTEFVSHLIRSQNWHQVLIFSRTKQGVDKLALQLNKLD-I 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ + DL R K++Q+F++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 271 ATQA---------FHGDLSQGAREKVLQDFKQGKIQVLVATDVAARGLDIVELQYVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 322 LPFIAEDYIHRIGRTGRAGNAGLAITLFSQED 353
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 37/219 (16%)
Query: 14 DTFL-TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD 72
DT L P Q +LFSAT+ P+++ L+ K P +A
Sbjct: 169 DTILEKVPEEKQTILFSATM---PKEILDLTSKYLK--------------NPLHIKAAHK 211
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARL 132
++ I +F S KL +L +LI + + L F NT + L
Sbjct: 212 QMTVPSIEQFYLEVSQSSKLE---------ILSRLIDANNIGLSLVFCNTKRQVDELTSS 262
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L ++G T+ ++ D+K DQRN+++ +FR+ +ID+++A+D ARGIDV+N+
Sbjct: 263 LQ------SRGYSTEA----LHGDMKQDQRNRVMTKFRKGQIDILIATDVAARGIDVDNV 312
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ V NY+ P + + Y+HRIGRT R G+ G S T V E
Sbjct: 313 EAVFNYDLPSDEEYYVHRIGRTGRAGKTGKSFTFVVGRE 351
>gi|124265824|ref|YP_001019828.1| ATP-dependent RNA helicase 2 [Methylibium petroleiphilum PM1]
gi|124258599|gb|ABM93593.1| putative ATP-dependent RNA helicase 2 [Methylibium petroleiphilum
PM1]
Length = 494
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P Q LLFSAT S + +KL S Q + P T T
Sbjct: 193 ILSYLPKSRQTLLFSATFSPEIKKLAN-SYLQDPILVETARPNATAST------------ 239
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ ++ + K + QL+R A+ + FVN+ GA RLAR
Sbjct: 240 -------------VEQRFYRVEDDDKRNAVKQLLRTRAITQSIVFVNSKLGAARLARAFE 286
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
D + T+ ++ D D+R K + F+ ++DL+VA+D ARG+D+ ++
Sbjct: 287 R-DGLRTQA---------LHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIADLPA 336
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G ++TLV+
Sbjct: 337 VFNFDVPFNAEDYVHRIGRTGRAGASGLAITLVS 370
>gi|303328313|ref|ZP_07358751.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345893680|ref|ZP_08844473.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
gi|302861643|gb|EFL84579.1| RNA helicase DeaD [Desulfovibrio sp. 3_1_syn3]
gi|345045934|gb|EGW49832.1| hypothetical protein HMPREF1022_03133 [Desulfovibrio sp.
6_1_46AFAA]
Length = 593
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P QR+LFSAT+ +L + L +P++ T
Sbjct: 174 PDGCQRILFSATMPPPIRELSKRFLREPEMLT--------------------------IA 207
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K T + + K L +++ + L F +T +G +D V
Sbjct: 208 HKMLTIPAIEQTYYEVRPYQKMDALCRVLDSQGFRKALVFCSTKRG----------VDEV 257
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T ++ DL QR++++Q FR ++++VA+D ARGIDV+++D VINY+
Sbjct: 258 TTHLQQRGYQSDGLHGDLAQAQRDRVMQRFRTEGLEILVATDVAARGIDVDDVDAVINYD 317
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++KY+HR+GRT R GR G++ T VT E
Sbjct: 318 MPHDVEKYVHRVGRTGRAGRVGSAFTFVTMRE 349
>gi|163755613|ref|ZP_02162732.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
gi|161324526|gb|EDP95856.1| DEAD/DEAH box helicase-like protein [Kordia algicida OT-1]
Length = 438
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 101/214 (47%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q LLFSAT S D +KL Q L P S EA +N
Sbjct: 176 PKRRQNLLFSATFSKDIKKLAQSILHHP-----------------VSVEATPEN------ 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHID 137
TT ++++K+ K +L +LI + VL F T GA+RL + L HI
Sbjct: 213 ---TTAEKVNQKVYKVDKPRKTELLIKLISEGNWSQVLVFTRTKHGANRLTKKLIAKHIS 269
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A G T+ + R K + F++ I ++VA+D ARG+D+ + VIN
Sbjct: 270 AAAIHGNKTQ------------NARTKALDGFKKGTIRILVATDIAARGLDIPLLPHVIN 317
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E P+ + Y+HRIGRT R G G +++LV+ E
Sbjct: 318 FELPNVPEDYVHRIGRTGRAGASGEAISLVSAEE 351
>gi|126173490|ref|YP_001049639.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|386340244|ref|YP_006036610.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125996695|gb|ABN60770.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|334862645|gb|AEH13116.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 411
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L + L PKL E N
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLI-----------------EVAKRN------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT AE+ + + + K ++ L+R VL F T QG +L + L+ D +
Sbjct: 217 ---TTAAEIEQVVYAVDADRKTELVSHLVRSKNWHQVLIFSRTKQGVDKLVQQLNKADII 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ DL R K++QEF++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 274 TQ----------AFHGDLSQGAREKVLQEFKQGKIQVLVATDVAARGLDIVELKYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 324 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355
>gi|134301686|ref|YP_001121654.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|421751456|ref|ZP_16188502.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|421753307|ref|ZP_16190305.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|421757037|ref|ZP_16193925.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|421758898|ref|ZP_16195737.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|424674217|ref|ZP_18111140.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
gi|134049463|gb|ABO46534.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis WY96-3418]
gi|409087570|gb|EKM87662.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 831]
gi|409087605|gb|EKM87695.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis AS_713]
gi|409091594|gb|EKM91587.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70102010]
gi|409092950|gb|EKM92911.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 80700103]
gi|417435154|gb|EKT90074.1| cold-shock DEAD/DEAH box helicase [Francisella tularensis subsp.
tularensis 70001275]
Length = 569
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 36/211 (17%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
+ QRLLFSAT+ D + + L P
Sbjct: 182 EQSQRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKA 215
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K T +++K K L +L+ GV+ FV T +A DN+
Sbjct: 216 KTKTANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL- 268
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
K G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+
Sbjct: 269 -KALGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDM 325
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++ Y+HRIGRT R GR+GTS++LV E
Sbjct: 326 PNDTDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|217974215|ref|YP_002358966.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|217499350|gb|ACK47543.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
Length = 412
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L + L PKL E N
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLI-----------------EVAKRN------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT AE+ + + + K ++ L+R VL F T QG +L + L+ D +
Sbjct: 217 ---TTAAEIEQVVYAVDADRKTELVSHLVRSKNWHQVLIFSRTKQGVDKLVQQLNKADII 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ DL R K++QEF++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 274 TQA----------FHGDLSQGAREKVLQEFKQGKIQVLVATDVAARGLDIVELKYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 324 LPFIAEDYIHRIGRTGRAGSTGLAITLFSQED 355
>gi|373948699|ref|ZP_09608660.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|386325459|ref|YP_006021576.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|333819604|gb|AEG12270.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|373885299|gb|EHQ14191.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 411
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L + L PKL E N
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLI-----------------EVAKRN------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT AE+ + + + K ++ L+R VL F T QG +L + L+ D +
Sbjct: 217 ---TTAAEIEQVVYAVDADRKTELVSHLVRSKNWHQVLIFSRTKQGVDKLVQQLNKADII 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G DL R K++QEF++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 274 TQAFHG----------DLSQGAREKVLQEFKQGKIQVLVATDVAARGLDIVELKYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 324 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355
>gi|89256685|ref|YP_514047.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115315095|ref|YP_763818.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|156502845|ref|YP_001428910.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|254367994|ref|ZP_04984014.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|290954278|ref|ZP_06558899.1| DEAD/DEAH box helicase domain-containing protein [Francisella
tularensis subsp. holarctica URFT1]
gi|422939018|ref|YP_007012165.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
FSC200]
gi|423051056|ref|YP_007009490.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
gi|89144516|emb|CAJ79831.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
holarctica LVS]
gi|115129994|gb|ABI83181.1| ATP-dependent RNA helicase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253804|gb|EBA52898.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
holarctica 257]
gi|156253448|gb|ABU61954.1| DEAD/DEAH box helicase domain protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|407294169|gb|AFT93075.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC200]
gi|421951778|gb|AFX71027.1| DEAD/DEAH box helicase [Francisella tularensis subsp. holarctica
F92]
Length = 569
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|226941463|ref|YP_002796537.1| RhlE4 [Laribacter hongkongensis HLHK9]
gi|226716390|gb|ACO75528.1| RhlE4 [Laribacter hongkongensis HLHK9]
Length = 457
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 35/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A P + E N
Sbjct: 181 PKTRQTLLFSATFSPEIKKL-----------------AAEFQRDPVTIEVARQN------ 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A + + + K +L +LI + AM V+ F T QGA RLAR L + D
Sbjct: 218 ---TTAATVEQAVYAVDAGQKRRLLARLINERAMSQVIVFCRTKQGADRLARELRNFD-- 272
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+++ ++ D R + F+ K+ ++VA+D ARG+DV ++ V+N++
Sbjct: 273 -------RLDAEAIHGDKAQQARLDTLAAFKDGKLRILVATDVAARGLDVSDLPFVVNFD 325
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++ + Y+HRIGRT R G+ G +++L+ E
Sbjct: 326 LPNSPEDYVHRIGRTGRAGQSGVAISLMDAEE 357
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
LS P++ Q SLF + +++E +P + L+ I +F S K
Sbjct: 172 LSSTPQE-RQTSLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNK 230
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
L VL +LI + + + F NT +GA L + ++ +G G
Sbjct: 231 LE---------VLTRLIDVYNPKLTVVFTNTKKGADEL------VSDLQARGYGAD---- 271
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DLK QR+ ++ +FR ID++VA+D ARGIDV++++ VINYE P + + Y+HRI
Sbjct: 272 SLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRI 331
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR G + + V E
Sbjct: 332 GRTGRAGRDGIAFSFVFGRE 351
>gi|415980977|ref|ZP_11559198.1| ATP-dependent RNA helicase RhlE, partial [Acidithiobacillus sp.
GGI-221]
gi|339834327|gb|EGQ62099.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus sp. GGI-221]
Length = 238
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 98/217 (45%), Gaps = 42/217 (19%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGD---TQPTSSEAGADNL 74
P + Q LLFSAT F P++ G D PTS E A N
Sbjct: 51 VLPKKRQNLLFSAT-------------FSPEI-------RGLADGLLNNPTSVEVAARN- 89
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
T +++++ + K +L LI +H VL F T GA RLAR L
Sbjct: 90 --------ATADNVAQRVFAVDQDRKRELLSHLIEEHQWGQVLVFTRTKHGADRLARHL- 140
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ M ++ D R + + EF+ K+ ++VA+D ARGID+ +
Sbjct: 141 ---------SQDGMQAMAIHGDKSQGARTRALAEFKEGKVQVLVATDIAARGIDISELPH 191
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V+N+E P + Y+HRIGRT R G G +V+LV++ E
Sbjct: 192 VVNFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEE 228
>gi|152999828|ref|YP_001365509.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|151364446|gb|ABS07446.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
Length = 411
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L + L PKL E N
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLI-----------------EVAKRN------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT AE+ + + + K ++ L+R VL F T QG +L + L+ D +
Sbjct: 217 ---TTAAEIEQVVYAVDADRKTELVSHLVRSKNWHQVLIFSRTKQGVDKLVQQLNKADII 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G DL R K++QEF++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 274 TQAFHG----------DLSQGAREKVLQEFKQGKIQVLVATDVAARGLDIVELKYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 324 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355
>gi|50286247|ref|XP_445552.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661437|sp|Q6FW42.1|DRS1_CANGA RecName: Full=ATP-dependent RNA helicase DRS1
gi|49524857|emb|CAG58463.1| unnamed protein product [Candida glabrata]
Length = 725
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ ++L LSL +P +++P T+ L+ F+
Sbjct: 382 PSKRQTLLFSATMNSRIKQLISLSLKRP--VRIMIDPPKQAATK----------LTQEFV 429
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK + + ++ FV AH+L +L +
Sbjct: 430 ------------RIRKRDHLKPSLLFNLIRKLDPNGQKRIVVFVARKDMAHKLRIILGLL 477
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +AE++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 478 G----------MAVAELHGSLTQEQRLDSVNKFKSLQVPVLICTDLASRGLDIPKIEVVI 527
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G S+T V
Sbjct: 528 NYDMPKSYEIYLHRVGRTARAGREGRSITFV 558
>gi|56708511|ref|YP_170407.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670982|ref|YP_667539.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|254371138|ref|ZP_04987140.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254875360|ref|ZP_05248070.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379717740|ref|YP_005306076.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|379726344|ref|YP_005318530.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|385795189|ref|YP_005831595.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|421756125|ref|ZP_16193052.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
gi|56605003|emb|CAG46104.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110321315|emb|CAL09487.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis FSC198]
gi|151569378|gb|EDN35032.1| hypothetical protein FTBG_00898 [Francisella tularensis subsp.
tularensis FSC033]
gi|254841359|gb|EET19795.1| cold shock DEAD-box protein A [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159724|gb|ADA79115.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis NE061598]
gi|377827793|gb|AFB81041.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TI0902]
gi|377829417|gb|AFB79496.1| Cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis TIGB03]
gi|409085703|gb|EKM85836.1| cold-shock DEAD-box protein A [Francisella tularensis subsp.
tularensis 80700075]
Length = 569
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|254369546|ref|ZP_04985557.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
gi|157122500|gb|EDO66635.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. holarctica FSC022]
Length = 569
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|346227140|ref|ZP_08848282.1| DEAD/DEAH box helicase [Anaerophaga thermohalophila DSM 12881]
Length = 402
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT+ P K+ +L+ + S+ N+S
Sbjct: 176 PKKRQTLMFSATM---PPKIRKLA-------------------RELLSDYEEVNIS---- 209
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + N K ++ L++ ++ +L F +T Q + R L
Sbjct: 210 --LSKPAEGILQAAYVVYENQKIPLVNNLLKGKDLKSILIFSSTKQKVKDIQRSLKQ--- 264
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N ++SDL +R +++++FR R I ++VA+D +ARGIDVE ID+VIN+
Sbjct: 265 -------NGLNAHAIHSDLDQKERTEVMRQFRNRNIQILVATDIIARGIDVEGIDLVINF 317
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P++ + Y+HR+GRTAR G ++T +T +
Sbjct: 318 DVPNDAEDYVHRVGRTARASSTGVALTFITDRD 350
>gi|262406616|ref|ZP_06083165.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294646166|ref|ZP_06723822.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
2a]
gi|294807864|ref|ZP_06766646.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
SD CC 1b]
gi|345509298|ref|ZP_08788899.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
gi|229446711|gb|EEO52502.1| ATP-dependent RNA helicase [Bacteroides sp. D1]
gi|262355319|gb|EEZ04410.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292638495|gb|EFF56857.1| putative ATP-dependent RNA helicase DeaD [Bacteroides ovatus SD CC
2a]
gi|294444926|gb|EFG13611.1| putative ATP-dependent RNA helicase DeaD [Bacteroides xylanisolvens
SD CC 1b]
Length = 420
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T +P+ +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNEPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIIQAAYVCYENQKLGIIRSLFMDEVPERVIVFASSKIKVKEVAKALKSM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T + E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFINEKE 352
>gi|187931511|ref|YP_001891495.1| DEAD/DEAH box helicase [Francisella tularensis subsp. mediasiatica
FSC147]
gi|187712420|gb|ACD30717.1| DEAD-box subfamily ATP-dependent helicase [Francisella tularensis
subsp. mediasiatica FSC147]
Length = 569
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 10/152 (6%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K T +++K K L +L+ GV+ FV T +A DN+
Sbjct: 215 AKTKTANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL 268
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+
Sbjct: 269 --KALGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYD 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++ Y+HRIGRT R GR+GTS++LV E
Sbjct: 325 MPNDTDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|62261419|gb|AAX77988.1| unknown protein [synthetic construct]
Length = 604
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 97/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 211 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 244
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ K
Sbjct: 245 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTSTIEVA------DNL--KA 296
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 297 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 354
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 355 TDTYVHRIGRTGRAGREGTSISLVPLKE 382
>gi|346227090|ref|ZP_08848232.1| DEAD/DEAH box helicase [Anaerophaga thermohalophila DSM 12881]
Length = 402
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT+ P K+ +L+ + S+ N+S
Sbjct: 176 PKKRQTLMFSATM---PPKIRKLA-------------------RELLSDYEEVNIS---- 209
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + N K ++ L++ ++ +L F +T Q + R L
Sbjct: 210 --LSKPAEGILQAAYVVYENQKIPLVNNLLKGKDLKSILIFSSTKQKVKDIQRSLKQ--- 264
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N ++SDL +R +++++FR R I ++VA+D +ARGIDVE ID+VIN+
Sbjct: 265 -------NGLNAHAIHSDLDQKERTEVMRQFRNRNIQILVATDIIARGIDVEGIDLVINF 317
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P++ + Y+HR+GRTAR G ++T +T +
Sbjct: 318 DVPNDAEDYVHRVGRTARASSTGVALTFITDRD 350
>gi|160874449|ref|YP_001553765.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|378707696|ref|YP_005272590.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|418023318|ref|ZP_12662303.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859971|gb|ABX48505.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315266685|gb|ADT93538.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|353537201|gb|EHC06758.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
Length = 411
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L + L PKL E N
Sbjct: 180 PSDRQTLLFSATLDAAIFSLSKTLLRDPKLI-----------------EVAKRN------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT AE+ + + + K ++ L+R VL F T QG +L + L+ D +
Sbjct: 217 ---TTAAEIEQVVYAVDADRKTELVSHLVRSKNWHQVLIFSRTKQGVDKLVQQLNKADII 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G DL R K++QEF++ KI ++VA+D ARG+D+ + VIN+E
Sbjct: 274 TQAFHG----------DLSQGAREKVLQEFKQGKIQVLVATDVAARGLDIVELKYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 324 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 355
>gi|288928387|ref|ZP_06422234.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331221|gb|EFC69805.1| ATP-dependent RNA helicase DeaD [Prevotella sp. oral taxon 317 str.
F0108]
Length = 447
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 88/150 (58%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE +++K C K VL + + + V+ F Q + R L +
Sbjct: 214 SKPAEKIAQKAYLCYEPQKLKVLEDIFKAGHLNRVIIFSGKKQKVKEINRALVRM----- 268
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N E++SDL ++R++++ +F+ D++VA+D L+RGID+++I +VINY+ P
Sbjct: 269 -----KINSDEMHSDLSQEERDQVMFKFKSGATDVLVATDILSRGIDIDDITMVINYDVP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++ Y+HRIGRTAR R G ++TL++ +
Sbjct: 324 HDVEDYVHRIGRTARAERDGVAITLISDQD 353
>gi|218248985|ref|YP_002374356.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8801]
gi|257062070|ref|YP_003139958.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 8802]
gi|218169463|gb|ACK68200.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8801]
gi|256592236|gb|ACV03123.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 8802]
Length = 485
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 10/124 (8%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L ++ A + + FV T Q A L L AG ++ E + +L QR
Sbjct: 233 LQPILELEAPESAIIFVRTKQTAAELTCKLQE--------AG--QSVDEYHGNLSQSQRE 282
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+++ FR KI LVVA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT+
Sbjct: 283 RLVYRFREGKIKLVVATDIAARGLDVENLSHVINYDLPDNAETYIHRIGRTGRAGKTGTA 342
Query: 224 VTLV 227
++LV
Sbjct: 343 ISLV 346
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
LS P++ Q SLF + +++E +P + L+ I +F S K
Sbjct: 172 LSSTPQE-RQTSLFSATMPKAILELTQKYQKEPVHIKVVRKELTVNNIKQFYIETRKSNK 230
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
L VL +LI + + + F NT +GA L + ++ +G G
Sbjct: 231 LE---------VLTRLIDVYNPKLTVVFTNTKKGADEL------VSDLQARGYGAD---- 271
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DLK QR+ ++ +FR ID++VA+D ARGIDV++++ VINYE P + + Y+HRI
Sbjct: 272 SLHGDLKQVQRDIVMDKFRHGTIDILVATDVAARGIDVDDVECVINYELPQDEEYYVHRI 331
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR G + + V E
Sbjct: 332 GRTGRAGRDGIAFSFVFGRE 351
>gi|438000180|ref|YP_007183913.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451813113|ref|YP_007449566.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|429339414|gb|AFZ83836.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii (ex Strigomonas culicis)]
gi|451779082|gb|AGF49962.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 447
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D KL T + +P T P S AD
Sbjct: 193 PKKRQSLLFSATFSEDVRKLG---------LTYLKDPVEADVTVPNSI---AD------- 233
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T ++S K+ + N K + LIR M+ V+ F NT GA++LA L
Sbjct: 234 ----TVKQISYKVLS---NEKYDAILFLIRSTEMKHVIVFTNTKIGANKLASYL------ 280
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ K++ ++ D +R +I+ +F+ +D++VA+D +ARG+D+ I V+N++
Sbjct: 281 ----SSNKISADCIHGDRTQKERIRILNDFKSSNLDVLVATDVVARGLDIAGISHVVNFD 336
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R +G +V+L + E
Sbjct: 337 IPHNAEDYVHRIGRTGRANNEGIAVSLYYSEE 368
>gi|42521033|ref|NP_966948.1| DEAD-box ATP dependent DNA helicase [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410774|gb|AAS14882.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila melanogaster]
Length = 408
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSATL D KL + L +P+ + D + T+S +
Sbjct: 174 PKIRQTLMFSATLPGDIVKLAEKYLNRPERISV--------DCEATTSVKIKQEIV---- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + +E EKL T QL ++ ++ FV T +GA +LA LH D
Sbjct: 222 --YASESEKYEKLVT-----------QLCQREG--SIIIFVKTKRGADQLANRLHKDDYS 266
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ DL+ +R ++I FRR + ++VA+D +RG+D+ +I VINY+
Sbjct: 267 AL----------AIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP + YIHRIGRTAR G +G +++ VT +
Sbjct: 317 APQSQADYIHRIGRTARAGAEGYALSFVTPQD 348
>gi|50291507|ref|XP_448186.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661162|sp|Q6FNK8.1|RRP3_CANGA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49527497|emb|CAG61137.1| unnamed protein product [Candida glabrata]
Length = 493
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 253 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 286
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + V+ F T A RL+ L + ++ AT
Sbjct: 287 TLVQTLMVVPGGLKNTFLIYLLNEFIGKTVIIFTRTKANAERLSGLCNLLEFSAT----- 341
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 342 -----ALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 396
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 397 YIHRVGRTARAGRSGKSISLVSQYD 421
>gi|225677315|ref|ZP_03788292.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
of Muscidifurax uniraptor]
gi|225590642|gb|EEH11892.1| ATP-dependent RNA helicase, DeaD/DeaH box [Wolbachia endosymbiont
of Muscidifurax uniraptor]
Length = 402
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSATL D KL + L +P+ + D + T+S +
Sbjct: 168 PKIRQTLMFSATLPGDIVKLAEKYLNRPERISV--------DCEATTSVKIKQEIV---- 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + +E EKL T QL ++ ++ FV T +GA +LA LH D
Sbjct: 216 --YASESEKYEKLVT-----------QLCQREG--SIIIFVKTKRGADQLANRLHKDDYS 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ DL+ +R ++I FRR + ++VA+D +RG+D+ +I VINY+
Sbjct: 261 AL----------AIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 310
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP + YIHRIGRTAR G +G +++ VT +
Sbjct: 311 APQSQADYIHRIGRTARAGAEGYALSFVTPQD 342
>gi|172039349|ref|YP_001805850.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|354552384|ref|ZP_08971692.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
gi|171700803|gb|ACB53784.1| ATP-dependent RNA helicase [Cyanothece sp. ATCC 51142]
gi|353555706|gb|EHC25094.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. ATCC 51472]
Length = 480
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T Q A L L I + ++ E + +L QR +++ FR K
Sbjct: 243 ESAIIFVRTKQTASDLTSKLQEIGH----------SVDEYHGNLSQSQRERLVHRFREGK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
I LVVA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT+++LV
Sbjct: 293 IKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLV 346
>gi|198283274|ref|YP_002219595.1| DEAD/DEAH box helicase [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218667828|ref|YP_002425861.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247795|gb|ACH83388.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520041|gb|ACK80627.1| ATP-dependent RNA helicase RhlE [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 418
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 97/215 (45%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGD---TQPTSSEAGADNLSS 76
P + Q LLFSAT F P++ G D PTS E A N
Sbjct: 180 PKKRQNLLFSAT-------------FSPEI-------RGLADGLLNNPTSVEVAARN--- 216
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
T +++++ + K +L LI +H VL F T GA RLAR L
Sbjct: 217 ------ATADNVAQRVFAVDQDRKRELLSHLIEEHQWGQVLVFTRTKHGADRLARHLSQ- 269
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M ++ D R + + EF+ K+ ++VA+D ARGID+ + V+
Sbjct: 270 ---------DGMQAMAIHGDKSQGARTRALAEFKEGKVQVLVATDIAARGIDISELPHVV 320
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+E P + Y+HRIGRT R G G +V+LV++ E
Sbjct: 321 NFELPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEE 355
>gi|444318663|ref|XP_004179989.1| hypothetical protein TBLA_0C06780 [Tetrapisispora blattae CBS 6284]
gi|387513030|emb|CCH60470.1| hypothetical protein TBLA_0C06780 [Tetrapisispora blattae CBS 6284]
Length = 496
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL + LF +VV P + + AD L G++
Sbjct: 213 QSMLFSATQTTKVEDLARISLRKGPLFINVV---------PENDTSTADGLEQGYV---- 259
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 260 ----------VCESDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 303
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + ++V +D ARG+D+ +D +I ++ PD+
Sbjct: 304 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 359
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 360 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 388
>gi|444318547|ref|XP_004179931.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
gi|387512972|emb|CCH60412.1| hypothetical protein TBLA_0C06160 [Tetrapisispora blattae CBS 6284]
Length = 757
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/211 (31%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ ++L LSL +P +++P + A L F+
Sbjct: 412 PSKRQTLLFSATMNSKIKQLISLSLKKP--VRIMIDPP----------KQAAAKLVQEFV 459
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
NLKP +LY LIRK G ++ FV + AH+L +L +
Sbjct: 460 ------------RIRKRDNLKPALLYTLIRKLDGAGQKRIVVFVARKETAHKLRIILGLL 507
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++ E++ L +QR + +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 508 G----------QSVGELHGSLTQEQRLDSVNKFKSLEVPVLLCTDLASRGLDIPKIEVVI 557
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 558 NYDMPKSYEIYLHRVGRTARAGREGRSVTFV 588
>gi|160884579|ref|ZP_02065582.1| hypothetical protein BACOVA_02566 [Bacteroides ovatus ATCC 8483]
gi|237718558|ref|ZP_04549039.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
gi|299145716|ref|ZP_07038784.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_23]
gi|336413268|ref|ZP_08593620.1| hypothetical protein HMPREF1017_00728 [Bacteroides ovatus
3_8_47FAA]
gi|383111896|ref|ZP_09932700.1| hypothetical protein BSGG_4556 [Bacteroides sp. D2]
gi|423286675|ref|ZP_17265526.1| hypothetical protein HMPREF1069_00569 [Bacteroides ovatus
CL02T12C04]
gi|423296461|ref|ZP_17274546.1| hypothetical protein HMPREF1070_03211 [Bacteroides ovatus
CL03T12C18]
gi|156110318|gb|EDO12063.1| DEAD/DEAH box helicase [Bacteroides ovatus ATCC 8483]
gi|229452018|gb|EEO57809.1| ATP-dependent RNA helicase [Bacteroides sp. 2_2_4]
gi|298516207|gb|EFI40088.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_23]
gi|313697021|gb|EFS33856.1| hypothetical protein BSGG_4556 [Bacteroides sp. D2]
gi|335938312|gb|EGN00202.1| hypothetical protein HMPREF1017_00728 [Bacteroides ovatus
3_8_47FAA]
gi|392670184|gb|EIY63669.1| hypothetical protein HMPREF1070_03211 [Bacteroides ovatus
CL03T12C18]
gi|392675362|gb|EIY68804.1| hypothetical protein HMPREF1069_00569 [Bacteroides ovatus
CL02T12C04]
Length = 422
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P+ +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIIQAAYVCYENQKLGIIRSLFMDEVPERVIVFASSKIKVKEVAKALKSM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T ++ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFISEKE 352
>gi|448535294|ref|XP_003870949.1| Rrp3 protein [Candida orthopsilosis Co 90-125]
gi|380355305|emb|CCG24822.1| Rrp3 protein [Candida orthopsilosis]
Length = 481
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LFSAT+++ EKL + SL P +
Sbjct: 243 PPKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 276
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
K+ T L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 277 TKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL--- 333
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N ++ L QR + +F+ K +++VA+D ARG+D+ ++DVVI
Sbjct: 334 ----------GFNAVPLHGQLSQAQRLGSLNKFKSSKANILVATDVAARGLDIPSVDVVI 383
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 384 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 418
>gi|430761663|ref|YP_007217520.1| ATP-dependent RNA helicase RhlE [Thioalkalivibrio nitratireducens
DSM 14787]
gi|430011287|gb|AGA34039.1| ATP-dependent RNA helicase RhlE [Thioalkalivibrio nitratireducens
DSM 14787]
Length = 506
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + +L L P E N +S +
Sbjct: 243 PGKRQNLLFSATFSDEIRRLSDGIL-----------------NSPVQVEVAPRNTASELV 285
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + ++ K +L LIRKH+ + VL F T GA+RLA D +
Sbjct: 286 ---------RQSVHLVQSDQKRDLLSHLIRKHSWEQVLVFTRTKHGANRLA------DKL 330
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ G + A ++ + R K + +F+ R+I ++VA+D ARG+D++ + V+N+E
Sbjct: 331 SKDG----IPAAAIHGNKSQAARTKALDQFKSRRIPVLVATDIAARGLDIDQLPQVVNFE 386
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G++++LV E
Sbjct: 387 LPNVPEDYVHRIGRTGRAGSAGSALSLVDAGE 418
>gi|429740520|ref|ZP_19274205.1| DEAD/DEAH box helicase [Porphyromonas catoniae F0037]
gi|429160956|gb|EKY03400.1| DEAD/DEAH box helicase [Porphyromonas catoniae F0037]
Length = 429
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R QR++FSAT+ P K+ + A T + PT E
Sbjct: 178 PKRSQRVMFSATM---PPKIKKF--------------ARTILSNPTEVELAISR------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P + + C K +L L + + F ++ LA +H +
Sbjct: 215 ----PPETIIQSAYVCYEAQKMRILTHLFEETPPTRTIIFSSSKMKVKELAAAMHRL--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ + +++SDL ++R +++++F+ IDL+VA+D +ARGID++NI +VINY+
Sbjct: 268 -------SIRVEQMHSDLTQEKREEVMRQFKAGNIDLLVATDVVARGIDIDNIRMVINYD 320
Query: 200 APDNIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
P + + Y+HRIGRTARGG +G ++T ++ E
Sbjct: 321 IPHDPEDYVHRIGRTARGGNDEGLAITFISEKE 353
>gi|335420259|ref|ZP_08551297.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
gi|334894618|gb|EGM32803.1| DEAD box family ATP-dependent RNA helicase [Salinisphaera
shabanensis E1L3A]
Length = 437
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D KL L +P D P ++
Sbjct: 173 PEKRQTLLFSATFSKDIRKLASSLLHKPVEI----------DVAPRNA------------ 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T + +K+ K VL LI+++ VL F T GA+RL + L D +
Sbjct: 211 ----TADRIDQKVVMVEKPRKRAVLSHLIKENGWHQVLVFARTKHGANRLCKQLES-DGL 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + + R K ++ F+ KI ++VA+D ARGID+E++ V+NYE
Sbjct: 266 PS---------AALHGNKSQNARTKALEGFKDGKIQVLVATDIAARGIDIESLPHVVNYE 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 317 LPNVSEDYVHRIGRTGRAGEAGEAVSLVGPDE 348
>gi|336118869|ref|YP_004573641.1| ATP-dependent RNA helicase [Microlunatus phosphovorus NM-1]
gi|334686653|dbj|BAK36238.1| putative ATP-dependent RNA helicase [Microlunatus phosphovorus
NM-1]
Length = 505
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 20/152 (13%)
Query: 86 AELSEKLTTCSTNL----------KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
AE S+ TT T KP ++ ++++ V+ F T + A RLA
Sbjct: 207 AESSDDTTTVPTTAQFVYQVHDLDKPEIVSRVLQAENRNRVMVFCRTKRAAQRLA----- 261
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
D++A +G ++ ++ DL R K +++FR ++++VA+D ARGIDVE + V
Sbjct: 262 -DDLAERG----FSVTAIHGDLSQVLREKALKKFRSGAVNVLVATDVAARGIDVEGVTHV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INYE PD+ K Y+HRIGRT R G G ++T V
Sbjct: 317 INYECPDDDKTYVHRIGRTGRAGASGVAITFV 348
>gi|336372365|gb|EGO00704.1| hypothetical protein SERLA73DRAFT_105076 [Serpula lacrymans var.
lacrymans S7.3]
Length = 681
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ +KL +LSL +P ++F +++ G
Sbjct: 363 PVSRQTMLFSATMTDSVDKLIRLSLTKPVRIFVDAKR-----------------SMAKGL 405
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ +F EK +P +L + ++ V+ F + + AH++ + +D
Sbjct: 406 VQEFVRVRPEKEKE-------RPALLLCICKRTFKTRVIVFFRSKKLAHQMRIVFGLLD- 457
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
M E++ DL +QR K +Q FR +D ++A+D +RG+D++ I+ VIN+
Sbjct: 458 ---------MKCDELHGDLSQEQRLKALQAFRDGSVDYLMATDLASRGLDIKGIETVINF 508
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P + +Y+HR+GRTAR G+ G SVT V
Sbjct: 509 DMPSQLAQYLHRVGRTARAGKTGRSVTFV 537
>gi|90022842|ref|YP_528669.1| dystroglycan-type cadherin-like protein [Saccharophagus degradans
2-40]
gi|89952442|gb|ABD82457.1| DEAD/DEAH box helicase-like protein [Saccharophagus degradans 2-40]
Length = 516
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S D +L + S+V P N ++ +
Sbjct: 197 PKKRQNLMFSATFSQDIRELAK----------SIV-------NNPVEITVNPPNSTATRV 239
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + EK P +L LI+ + Q VL F T GA++L + L
Sbjct: 240 KQWICPVDKKEK---------PALLTHLIKTNKWQQVLVFSRTKHGANKLVKQLE----- 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G+ + A ++ + R K + EF+ + ++VA+D ARG+D++ + V+N++
Sbjct: 286 -----GSGLRAAAIHGNKSQGARTKALAEFKNGTVKILVATDIAARGLDIDQLPQVVNFD 340
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G +G +V+LV+ E
Sbjct: 341 LPQVAEDYVHRIGRTGRAGAEGNAVSLVSADE 372
>gi|375011758|ref|YP_004988746.1| DNA/RNA helicase [Owenweeksia hongkongensis DSM 17368]
gi|359347682|gb|AEV32101.1| DNA/RNA helicase, superfamily II [Owenweeksia hongkongensis DSM
17368]
Length = 422
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L FSAT+ + +L + L PK + P SS
Sbjct: 178 PAKRQSLFFSATMPKNIVELSRKILTNPKKV----------EVSPVSS------------ 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T + + L + +LK +L+ +++ +M VL F T GA R+ R L
Sbjct: 216 ----TAETIQQYLYYTNKDLKKDLLFHILKDQSMDQVLIFAKTKHGADRVVRNLEK---- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+ A ++ + +QR K + +F+ ++I ++VA+D ARGID++ + VINY+
Sbjct: 268 ------QKIKSAAIHGNKSQNQRQKALNQFKDKQIRVLVATDIAARGIDIDKLQHVINYD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGR+ R G +G ++++ E
Sbjct: 322 IPNIAETYVHRIGRSGRAGEEGMAISMCEPEE 353
>gi|255080620|ref|XP_002503883.1| predicted protein [Micromonas sp. RCC299]
gi|226519150|gb|ACO65141.1| predicted protein [Micromonas sp. RCC299]
Length = 754
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 38/206 (18%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
+FSAT+ EKL + + P + T IG +
Sbjct: 532 MFSATMPPSVEKLARKYMRNPAVVT---------------------------IGSAGKTS 564
Query: 87 ELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+L +++ +T N KP L ++ ++ + FVNT R++ H+ N+ K
Sbjct: 565 DLIKQIVQWTTSNQKPAQLELVLSQYPDTQAIIFVNTK-------RVVDHVSNLCFK--- 614
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ ++ DQR + ++ F++ + D++VA+D RGIDV+ ID+V+NYE P I+
Sbjct: 615 MGYSVGAIHGGKSQDQREESLRGFKQGEYDILVATDVAGRGIDVKGIDLVVNYEMPLVIE 674
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y HRIGRT R GRQGT+V+ +T+ +
Sbjct: 675 NYTHRIGRTGRAGRQGTAVSFLTSED 700
>gi|127513728|ref|YP_001094925.1| DEAD/DEAH box helicase [Shewanella loihica PV-4]
gi|126639023|gb|ABO24666.1| DEAD/DEAH box helicase domain protein [Shewanella loihica PV-4]
Length = 408
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSATL L L QPK V P Q ++S+
Sbjct: 178 PSERQTLLFSATLDDKVLALSHRWLKQPKRIA--VSP------QNSASQ----------- 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ +++ + K +L LI K Q VL F A +LA L +
Sbjct: 219 -------DVEQRVYAVDSERKFALLSHLINKGDWQRVLVFSRKKVAADKLAARLCEQGIM 271
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A + DL R +++ +FRR +I ++VA+D ARGID+E++D V+NYE
Sbjct: 272 AKA----------FHGDLGQGAREQVLADFRRGEIKVLVATDVAARGIDIESLDYVVNYE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G+QG +VTL +
Sbjct: 322 LPYVAQDYVHRIGRTGRAGKQGVAVTLYCEED 353
>gi|409080848|gb|EKM81208.1| hypothetical protein AGABI1DRAFT_119719 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 398
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQ 63
R + LV+ L P LFSAT++ + KL + SL T
Sbjct: 150 RQLKHLVLDEADRLAIPRERSTYLFSATMTANVTKLQRASL-----------------TD 192
Query: 64 PTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA 123
P + S F K+ T L + C K ++L LI A ++ FV T
Sbjct: 193 PVRVDV------SSF--KYKTVPSLLQYYVLCPLVNKEVMLVYLINSMAQNTIIVFVRTV 244
Query: 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
A RL+ +L ++ A ++ +L QR F+ K +++VA+D
Sbjct: 245 ADAKRLSIVLRTLEFQAVP----------LHGELSQSQRLGAFNRFKSGKSNILVATDLA 294
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+DV N+DVVINY+ P + K Y+HR+GRTAR GR G S+ +V+ ++
Sbjct: 295 SRGLDVANVDVVINYDTPTSSKDYVHRVGRTARAGRAGKSILMVSQYD 342
>gi|374287718|ref|YP_005034803.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
gi|301166259|emb|CBW25834.1| putative ATP-dependent RNA helicase [Bacteriovorax marinus SJ]
Length = 431
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 98/213 (46%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L FSAT+ D KL L +PK+ + P S
Sbjct: 178 PKKRQTLFFSATMPKDISKLASTILTRPKII----------EVSPPS------------- 214
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
TP E +++ L KP +L ++I + + V+ F T GA R+ + L
Sbjct: 215 ----TPVESIAQYLIHIDRVQKPKLLKKIINESVSESVIVFTRTKYGADRVCKHLMK--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
AG + + ++S+ R K + FR +KI +VA+D ARGIDV+ I VINY
Sbjct: 268 -----AG--IESSSIHSNRSQGAREKALAAFRNKKIKALVATDIAARGIDVDGISHVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + YIHRIGRTAR G+ G + T E
Sbjct: 321 DVPLEAESYIHRIGRTARAGKSGVAYTFCDPAE 353
>gi|218131071|ref|ZP_03459875.1| hypothetical protein BACEGG_02675 [Bacteroides eggerthii DSM 20697]
gi|217986775|gb|EEC53108.1| DEAD/DEAH box helicase [Bacteroides eggerthii DSM 20697]
Length = 428
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 SKPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKQM----- 267
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY+ P
Sbjct: 268 -----KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDVP 322
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR G ++T V E
Sbjct: 323 HDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|403508500|ref|YP_006640138.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402803335|gb|AFR10745.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 513
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 31/212 (14%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q +LFSAT+ + L + L T+PT AG DN G
Sbjct: 168 PAERQTMLFSATMPSEIVTLSRNYL-----------------TRPTHVRAGDDNEIDGS- 209
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ +++ KP +L +L++ + F T + R+A ++
Sbjct: 210 ---AITSRIAQHAFRTHQMDKPEMLARLLQAEDHGQSMVFCQTKRACDRVA------SDL 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++G A V+ DL QR + ++ FR KI+++VA+D ARG+DV+++ V+NYE
Sbjct: 261 KSRG----FAAAAVHGDLGQSQRERALRAFRNGKINILVATDVAARGLDVDDVTHVVNYE 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P++ K Y HRIGRT R GR GT+VT V E
Sbjct: 317 TPEDEKTYTHRIGRTGRAGRTGTAVTFVDWQE 348
>gi|367006540|ref|XP_003688001.1| hypothetical protein TPHA_0L02160 [Tetrapisispora phaffii CBS 4417]
gi|357526307|emb|CCE65567.1| hypothetical protein TPHA_0L02160 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL + LF +VV T + AD L G++
Sbjct: 215 QSMLFSATQTTKVEDLARMSLRKGPLFINVVTDKDT---------STADGLEQGYV---- 261
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 262 ----------VCESDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 305
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + ++V +D ARG+D+ +D ++ ++ PD+
Sbjct: 306 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIVQFDPPDD 361
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T HE
Sbjct: 362 PRDYIHRVGRTARGTKGKGKSLMFLTPHE 390
>gi|325188363|emb|CCA22900.1| DEAD/DEAH box RNA helicase putative [Albugo laibachii Nc14]
Length = 496
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 15/206 (7%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQP---TSSEAGADNLSSGFIGK 81
R+L SATL+ +P KL + + ++ ++ + D+ P T E AD++
Sbjct: 236 RVLLSATLTENPSKLALIGMHYARVLK--IKGSEGEDSMPKAQTECELDADSV------- 286
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ TP +L E + C ++ KPL L QL+ Q L F ++ HRL RLL V
Sbjct: 287 YETPEKLEEWMIECDSDSKPLRLIQLLLTFKDQMTLIFTSSVNATHRLTRLLQL---VFK 343
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+ + + + E S L QR ++ + ++ ++V SD +ARG+D++++ VINY+ P
Sbjct: 344 EHSDDDVGVQEYSSSLTLQQRRTLVAKCKKGLYRILVCSDAMARGMDLDDVVNVINYDVP 403
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
IK YIHR GR AR GR G VTLV
Sbjct: 404 SFIKTYIHRAGRAARAGRFGRCVTLV 429
>gi|357059925|ref|ZP_09120700.1| hypothetical protein HMPREF9332_00257 [Alloprevotella rava F0323]
gi|355377113|gb|EHG24347.1| hypothetical protein HMPREF9332_00257 [Alloprevotella rava F0323]
Length = 421
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 39/209 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT+ +K + + P+ V
Sbjct: 184 PEKRQTILFSATMPDTIDKFARSIMHNPEEIRLAV------------------------- 218
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + + C K ++ L ++ + V+ F ++ Q L LL
Sbjct: 219 ---SKPAEKIQQSIYVCRETDKNTIIRHLFKQCKPERVIIFCSSKQKVKELHILLKR--- 272
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
N ++SDL QR++++ +F+ D++VA+D +ARGID+ +I +VINY
Sbjct: 273 -------AHFNCEAMHSDLLQQQRDEVMLKFKSGHTDILVATDIVARGIDINDIQMVINY 325
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP + + Y+HRIGRTAR GR G +VTLV
Sbjct: 326 DAPRDAEDYVHRIGRTARAGRNGIAVTLV 354
>gi|388455441|ref|ZP_10137736.1| ATP-dependent RNA helicase [Fluoribacter dumoffii Tex-KL]
Length = 565
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PE+ Q+ LF + + + A T P S E A+ T + ++
Sbjct: 177 PEE-KQIGLFSATMPYRIRQIANTYLHNPVSIEIRAET---------ATVKSIEQRFLFA 226
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A +L M ++
Sbjct: 227 SGHQKPDALLRVLAVEEYQGVIVFVRTKSSTEEVAEVLQQ----------QGMRAMAIHG 276
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +FR+ ID++VA+D ARG+DV+ + VINY+ P + + Y+HRIGRT
Sbjct: 277 DITQALRERIIAQFRQGAIDILVATDVAARGLDVDRVTHVINYDLPHDNETYVHRIGRTG 336
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G +V VT E
Sbjct: 337 RAGRSGVAVLFVTPKE 352
>gi|219122480|ref|XP_002181572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406848|gb|EEC46786.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 467
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 104/208 (50%), Gaps = 27/208 (12%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT++ + L QLS+ +P + + + A + D + A L F+
Sbjct: 173 PVQRQTLLFSATMNTKVDDLIQLSMKRP-VRVRISDKANSMDIEV------APRLEQEFV 225
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ N + ++L L R Q ++ F +T AHRL L
Sbjct: 226 ---------RVRAGNEGANREGMLLALLTRTFKKQTIV-FFDTKAAAHRLMILC------ 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ AE++ +L QR ++EFR+ +D+++A+D ARG+D++ + VIN+E
Sbjct: 270 ----GLCGIKCAELHGNLSQQQRLTALEEFRKGDVDVLLATDLAARGLDIDRVKTVINFE 325
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + Y+HRIGRTAR GR G S TL+
Sbjct: 326 MPSQVATYVHRIGRTARAGRGGRSCTLI 353
>gi|410722381|ref|ZP_11361682.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
gi|410597125|gb|EKQ51762.1| DNA/RNA helicase, superfamily II [Methanobacterium sp. Maddingley
MBC34]
Length = 527
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 88/151 (58%), Gaps = 11/151 (7%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+ T P E+ + +K +L +LI H ++ L F NT + RL + N+
Sbjct: 211 EITVP-EIQQIYFEVKEQMKLDLLTRLIDMHNLKLSLVFCNTKRRVDRL------VSNLQ 263
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T+G ++ D+ +QR++++ +FR+ +I+++VA+D ARGIDVE+++ V NY+
Sbjct: 264 TRGYFAD----GLHGDMSQNQRDRVMNKFRKGQIEILVATDVAARGIDVEDVEAVFNYDV 319
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+N + Y+HRIGRT R G+ G + T V+ E
Sbjct: 320 PNNDEYYVHRIGRTGRAGKTGQAFTFVSGKE 350
>gi|423344472|ref|ZP_17322184.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
gi|409212870|gb|EKN05904.1| hypothetical protein HMPREF1077_03614 [Parabacteroides johnsonii
CL02T12C29]
Length = 426
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 216 PETIMQTAYVCYDMQKLRILEDLFSQSRPQRVIIFSSSKMKVKELASTLKRM-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ +ID++VA+D ++RGID+ +I +VIN++ P +
Sbjct: 268 --KFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHDP 325
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T ++T E
Sbjct: 326 EDYVHRIGRTARGTNGEGLAITFISTEE 353
>gi|401840382|gb|EJT43223.1| DBP6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 629
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 42/232 (18%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D T+P +++FSATL+ + EKL+ L+L++PKLF D
Sbjct: 365 DKLDTFPGNVIKMIFSATLTTNTEKLNDLNLYKPKLFL-----------------KQTDK 407
Query: 74 LSSGFIGKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQ-----GVLCFVNTAQG 125
L + P++L E + T + KPL+L I + +L FV + +
Sbjct: 408 L-------YQLPSKLREFNINVPTAKSIYKPLILLYSIDQFIAHLSDASKILIFVKSNES 460
Query: 126 AHRLARLLHHID------NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK----ID 175
+ RL +LL I N+ +M I V S+ + KI+ F R I+
Sbjct: 461 SIRLTKLLQLISESRSQSNIFRNLQNLEMVINSVNSNHPQSENKKIVANFSNRSKSASIN 520
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++ +D ++RGID+ +I VINY+ P + ++Y+HR+GRTAR G++ L+
Sbjct: 521 ILITTDVMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANETGSAYNLL 572
>gi|345884175|ref|ZP_08835587.1| hypothetical protein HMPREF0666_01763 [Prevotella sp. C561]
gi|345042932|gb|EGW47019.1| hypothetical protein HMPREF0666_01763 [Prevotella sp. C561]
Length = 573
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 107/213 (50%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PATCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ + C K ++ + + ++ V+ F + Q ++A L+ +
Sbjct: 218 -------EKIQQTAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRM-- 268
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL +QRN ++ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 269 --------HINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGIDIDDIAMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++T V +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGKAITFVNEDD 353
>gi|374261655|ref|ZP_09620233.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
gi|363537749|gb|EHL31165.1| ATP-dependent RNA helicase [Legionella drancourtii LLAP12]
Length = 584
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 36 PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
PE+ Q+ LF + + + A T P S E ++ T + ++
Sbjct: 178 PEQ-KQIGLFSATMPHRIRQIANTYLNNPASIEIRSET---------ATVKSIEQRFLFA 227
Query: 96 STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS 155
S + KP L +++ QGV+ FV T +A LL + ++
Sbjct: 228 SGHQKPDALVRVLAVEEYQGVIVFVRTKSSTEEVAELLQQ----------QGLRAMAIHG 277
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
D+ R +II +FR+ ID++VA+D ARG+DVE + VINY+ P + + Y+HRIGRT
Sbjct: 278 DITQALRERIIAQFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRIGRTG 337
Query: 216 RGGRQGTSVTLVTTHE 231
R GR G ++ VT E
Sbjct: 338 RAGRSGVAILFVTPKE 353
>gi|409422582|ref|ZP_11259673.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas sp.
HYS]
Length = 443
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 36/216 (16%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+ P+R Q LLFSAT S + +L +L P S E N++
Sbjct: 173 YAALPARRQTLLFSATFSDEIRQLAAQTL-----------------NDPLSIEVSPRNVT 215
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+ + ++ P + K P + L+RK + VL F T G
Sbjct: 216 ASTVKQWIVPVDKKRK---------PELFSHLMRKQRWKQVLVFAKTRNG---------- 256
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + + G +N ++ D R + + F+ R+I ++VA+D ARG+D++++ +V
Sbjct: 257 VDQLVERLRGQGVNADGIHGDKPQATRQRALDSFKAREIQILVATDVAARGLDIDDLPLV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 317 VNFDLPIVAEDYIHRIGRTGRKGNSGEAISLVCADE 352
>gi|387824224|ref|YP_005823695.1| cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
gi|328675823|gb|AEB28498.1| Cold-shock DEAD-box protein A [Francisella cf. novicida 3523]
Length = 570
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 99/200 (49%), Gaps = 20/200 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
LSH E+ +L LF + T + + P + A K T +++K
Sbjct: 177 LSHISEQCQRL-LFSATIPTDIADIIEEYLRNPCKIQVKA---------KTKTANTVTQK 226
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
K L +L+ GV+ FV T +A DN+ K G K +A
Sbjct: 227 FIVIKGFRKIDALDRLLEIEETDGVIIFVKTKTSTIEVA------DNL--KALGYK--VA 276
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
+ D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++ Y+HRI
Sbjct: 277 AINGDMQQSQREYIVDQFRNAKSDILVATDVVARGIDLERISHVINYDMPNDTDTYVHRI 336
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR+GTS++LV E
Sbjct: 337 GRTGRAGREGTSISLVPLKE 356
>gi|329954895|ref|ZP_08295912.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
gi|328526999|gb|EGF54010.1| DEAD/DEAH box helicase [Bacteroides clarus YIT 12056]
Length = 499
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL+ Q ++ L+
Sbjct: 242 PKERQTIMFSATM---PAKIQQLA-------------------QSILNDPAEVKLA---- 275
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 276 --VSKPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKQM-- 331
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +++++VA+D +ARGID+++I +VINY
Sbjct: 332 --------KLNVGEMHSDLEQAQREEVMYEFKAGRVNILVATDIVARGIDIDDIRLVINY 383
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 384 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 416
>gi|88859624|ref|ZP_01134264.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
gi|88818641|gb|EAR28456.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas tunicata D2]
Length = 455
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D L + + P + V PA
Sbjct: 176 PAKRQNLMFSATFSDDIRNLAKGLINDPVEVS--VAPAN--------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A + ++L KP +L LI ++ + VL F T GA+RL + L
Sbjct: 213 ---TTAATVEQRLHPVDKAKKPALLSHLILQNDWKQVLVFTRTKHGANRLVKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+N A ++ + R K + F+ ++ ++VA+D +ARG+D++ + V+N++
Sbjct: 265 -----ADKINAAAIHGNKSQSARMKALAGFKDGQVRVLVATDIVARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++ VTT E
Sbjct: 320 LPNIAEDYVHRIGRTGRAGASGHAISFVTTEE 351
>gi|363752737|ref|XP_003646585.1| hypothetical protein Ecym_4755 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890220|gb|AET39768.1| hypothetical protein Ecym_4755 [Eremothecium cymbalariae
DBVPG#7215]
Length = 398
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 37/221 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D F P+ Q +L SAT+S D V+E T P
Sbjct: 188 IYDIFTKLPTSVQVVLISATISKD-----------------VLEVVKKLMTDPVKLLVKR 230
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D +S I ++ E E K T L + Q + F NT + L+
Sbjct: 231 DQISLDVIKQYHVNVEKEEWKFDTLCDLYDSLTINQCV---------IFCNTKKKVDWLS 281
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
R L T ++ ++ D++ D+R K++ +FR L++++D ARGIDV+
Sbjct: 282 RKLLQ----------TNFAVSSIHGDMQQDEREKVMNDFRSGSSRLLISTDVWARGIDVQ 331
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
I +VINY+ P+ ++ YIHRIGR+ R GR+G ++ +T E
Sbjct: 332 QISLVINYDIPELLENYIHRIGRSGRFGRKGIAINFITRDE 372
>gi|58697110|ref|ZP_00372550.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila simulans]
gi|58698416|ref|ZP_00373327.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila ananassae]
gi|225630895|ref|YP_002727686.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
wRi]
gi|58535071|gb|EAL59159.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila ananassae]
gi|58536598|gb|EAL59931.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia
endosymbiont of Drosophila simulans]
gi|225592876|gb|ACN95895.1| ATP-dependent RNA helicase, DeaD/DeaH box family [Wolbachia sp.
wRi]
Length = 402
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 106/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSATL D KL + L +P+ + D + T+S +
Sbjct: 168 PKIRQTLMFSATLPGDIVKLAEKYLNRPERISV--------DCEVTTSVKIKQEIV---- 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + +E EKL T QL ++ ++ FV T +GA +LA LH D
Sbjct: 216 --YASESEKYEKLVT-----------QLCQREG--SIIIFVKTKRGADQLAHRLHKDDYS 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ DL+ +R ++I FRR + ++VA+D +RG+D+ +I VINY+
Sbjct: 261 AL----------AIHGDLRQHKRERVINSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 310
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
AP + YIHRIGRTAR G +G +++ VT +
Sbjct: 311 APQSQADYIHRIGRTARAGAEGYALSFVTPQD 342
>gi|410097606|ref|ZP_11292587.1| hypothetical protein HMPREF1076_01765 [Parabacteroides goldsteinii
CL02T12C30]
gi|409223696|gb|EKN16631.1| hypothetical protein HMPREF1076_01765 [Parabacteroides goldsteinii
CL02T12C30]
Length = 431
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 216 PETIMQTAYICYDPQKLKILEDLFLQSRPQRVIIFSSSKMKVKELASTLKRM-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D ++RGID+ +I +VINY+ P +
Sbjct: 268 --KFNVAAMHSDLEQSQREEVMKEFKNGHIDILVATDVVSRGIDINDIKLVINYDIPHDP 325
Query: 205 KKYIHRIGRTARG-GRQGTSVTLVTTHE 231
+ Y+HRIGRTARG G +G ++T ++ E
Sbjct: 326 EDYVHRIGRTARGTGGEGLAITFISIEE 353
>gi|392396642|ref|YP_006433243.1| DNA/RNA helicase [Flexibacter litoralis DSM 6794]
gi|390527720|gb|AFM03450.1| DNA/RNA helicase, superfamily II [Flexibacter litoralis DSM 6794]
Length = 617
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 29/194 (14%)
Query: 40 HQLSLFQPKLFTSVVEPAGTGDTQP-----TSSEAGADNLSSGFIGKFTTPAELSEKLTT 94
HQ LF + +++ A P S E +DN+ F+
Sbjct: 206 HQTVLFSATMPKPILQIAKKYQNSPEIVKVISKELTSDNIEQSFL--------------P 251
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
+ N K VL +L+ + + +L F NT Q +A L KG + ++
Sbjct: 252 INPNYKTDVLVRLLAYNGWESMLIFCNTKQRTDEVAETLIQ------KGYAAEA----LH 301
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
DL QRN ++ +FR ++ ++VA+D ARGIDV+N++ VINY+ P + + Y+HRIGRT
Sbjct: 302 GDLAQHQRNLVMNKFRHGRVQILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGRT 361
Query: 215 ARGGRQGTSVTLVT 228
R G +G S+T ++
Sbjct: 362 GRAGNKGVSITFIS 375
>gi|218259702|ref|ZP_03475335.1| hypothetical protein PRABACTJOHN_00994, partial [Parabacteroides
johnsonii DSM 18315]
gi|218224948|gb|EEC97598.1| hypothetical protein PRABACTJOHN_00994 [Parabacteroides johnsonii
DSM 18315]
Length = 372
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 85/148 (57%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 162 PETIMQTAYVCYDMQKLRILEDLFSQSRPQRVIIFSSSKMKVKELASTLKRM-------- 213
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ +ID++VA+D ++RGID+ +I +VIN++ P +
Sbjct: 214 --KFNVAAMHSDLEQSQREEVMKEFKNGRIDILVATDVVSRGIDINDIKLVINFDIPHDP 271
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T ++T E
Sbjct: 272 EDYVHRIGRTARGTNGEGLAITFISTEE 299
>gi|395003518|ref|ZP_10387653.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
gi|394318531|gb|EJE54950.1| DNA/RNA helicase, superfamily II [Acidovorax sp. CF316]
Length = 499
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P + LLFSAT S + ++L AG+ P + E N
Sbjct: 177 ILSYLPKQRTTLLFSATFSPEIKRL-----------------AGSYLQNPITIEVARPN- 218
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
T + + ++ + + + K ++Q+++ ++ FVN+ G RLAR L
Sbjct: 219 --------ETASTVEQRFYSANDDDKRRAIHQVLKTRGLKQAFIFVNSKLGCARLARSLE 270
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ A ++ D D+R K ++ F++ ++DL+V +D ARG+D++++
Sbjct: 271 R----------EGLKTAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARGLDIKDVPA 320
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VTLV+
Sbjct: 321 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|393784034|ref|ZP_10372203.1| hypothetical protein HMPREF1071_03071 [Bacteroides salyersiae
CL02T12C01]
gi|392667693|gb|EIY61200.1| hypothetical protein HMPREF1071_03071 [Bacteroides salyersiae
CL02T12C01]
Length = 415
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AKTILNNPVEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPERVIIFASSKIKVKEVAKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR I+ EF+ +I+++VA+D ++RGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVAITFVNEKE 352
>gi|405953609|gb|EKC21239.1| Putative ATP-dependent RNA helicase DDX27 [Crassostrea gigas]
Length = 740
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT+S + L +SL QP K+F + Q T G L FI
Sbjct: 347 QTMLFSATMSEAVQDLASVSLKQPVKIFVN----------QNTDVALG---LRQEFI--- 390
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + + F+ T + AHR+ +L +
Sbjct: 391 --------RIRPNREGDREAIIASLVSRTFRDHCIVFIQTKKQAHRMHIILGLLG----- 437
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+N+ E++ +L QR + ++ F++ +D+++A+D ARG+D+E + VIN+ P+
Sbjct: 438 -----VNVGELHGNLSQAQRLETLKRFKQADVDVLLATDLAARGLDIEGVKTVINFTMPN 492
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR G++G SVTLV E
Sbjct: 493 TIKHYVHRVGRTARAGKKGRSVTLVGEQE 521
>gi|119897299|ref|YP_932512.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
gi|119669712|emb|CAL93625.1| putative ATP-dependent RNA helicase [Azoarcus sp. BH72]
Length = 494
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL L P+L E N+ S I
Sbjct: 180 PASRQSLLFSATFSDEIKKLADQMLKNPQLI-----------------EVARRNMVSETI 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ ++ S+ +K +L L+R L FV+T RLA L
Sbjct: 223 ---------THRVHPVSSGMKRNLLAHLLRHQPDTQALVFVDTKLVCGRLAHFLER---- 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ ++ D QR + ++ F+ K+ ++VA+D ARGID++ + VINYE
Sbjct: 270 ------HSISADSIHGDKSQQQRTETLEAFKAGKLRVLVATDVAARGIDIDELPYVINYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G QG +V+LV T E
Sbjct: 324 LPHTAEDYVHRIGRTGRAGHQGNAVSLVCTEE 355
>gi|387887011|ref|YP_006317310.1| DEAD/DEAH box helicase [Francisella noatunensis subsp. orientalis
str. Toba 04]
gi|386871827|gb|AFJ43834.1| DEAD-box subfamily ATP-dependent helicase [Francisella noatunensis
subsp. orientalis str. Toba 04]
Length = 583
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 95/208 (45%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + Q L P K
Sbjct: 185 QRLLFSATIPTDIADIIQEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ G
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLEVEETDGVIIFVKTKTSTIEVA------DNLKALG 272
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 273 ----YRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 SDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|323335994|gb|EGA77270.1| Has1p [Saccharomyces cerevisiae Vin13]
gi|365763984|gb|EHN05510.1| Has1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 505
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV---- 269
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 270 ----------VCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 313
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 314 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 369
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 370 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
>gi|358636156|dbj|BAL23453.1| ATP-dependent RNA helicase [Azoarcus sp. KH32C]
Length = 480
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL L +P+L E N S I
Sbjct: 180 PASRQSLLFSATFSDEIKKLADQMLKEPQLI-----------------EVARRNTVSETI 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P S LK +L L+R L FV T RLA L D
Sbjct: 223 THVVHP---------VSAGLKRNLLVHLLRHEPDTQALVFVATKLACGRLAHFLERHDIA 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ D QR + ++ F+ K+ ++VA+D ARG+D++++ VIN+E
Sbjct: 274 ADA----------IHGDKGQSQRTEALEAFKSGKLRVLVATDVAARGLDIDDLPSVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R GR+G +V+LV++ E
Sbjct: 324 LPHTAEDYVHRIGRTGRAGRKGRAVSLVSSEE 355
>gi|354548378|emb|CCE45114.1| hypothetical protein CPAR2_701180 [Candida parapsilosis]
Length = 478
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LFSAT+++ EKL + SL P +
Sbjct: 240 PPKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 273
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
K+ T L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 274 TKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL--- 330
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N ++ L QR + +F+ K +++VA+D ARG+D+ ++DVVI
Sbjct: 331 ----------GFNAVPLHGQLSQAQRLGSLNKFKSGKANILVATDVAARGLDIPSVDVVI 380
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 381 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 415
>gi|45768538|gb|AAH67608.1| Ddx52 protein [Danio rerio]
Length = 501
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 39/207 (18%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
+R+LFSAT + D E+ +L+L DNL S IG
Sbjct: 245 RRVLFSATFATDVERWCKLNL---------------------------DNLVSVSIGARN 277
Query: 84 TPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ AE E+ L S N K L + LI++ + VL FV Q R AR L+H +
Sbjct: 278 SAAETVEQQLLFVGSENGKILAMRNLIKQGFLPPVLVFV---QSIDR-ARELYH--ELVY 331
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+G +N+ +++D QR+ ++ FR KI +++ + LARGID + I++VINY+ P
Sbjct: 332 EG----INVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFP 387
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +YIHRIGRT R G +G +VT T
Sbjct: 388 TSAVEYIHRIGRTGRAGHKGKAVTFFT 414
>gi|342217228|ref|ZP_08709875.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
gi|341588118|gb|EGS31518.1| type III restriction enzyme, res subunit [Peptoniphilus sp. oral
taxon 375 str. F0436]
Length = 548
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 106/214 (49%), Gaps = 37/214 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T P+R Q L FSAT ++ + +L +PK ++E
Sbjct: 173 TNPNR-QTLFFSATFDNNIKDFSKLYQDKPK--KVILEK--------------------- 208
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
K T ++ + + N+K +L +L+ H + F NT + +D
Sbjct: 209 ---KELTAEKIHQYYLELNRNMKTEILNRLLLIHRPNKSIIFCNTKK----------MVD 255
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
++ + A +A ++ D++ R++++++FR IDL++A+D ARG+DV +ID+V N
Sbjct: 256 SLEVEMAQKGYQVASLHGDMRQSSRDQVMKKFRDGSIDLLIATDVAARGLDVSDIDLVFN 315
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ P + Y+HRIGRTAR G++G S T VT +
Sbjct: 316 YDLPQQSEYYVHRIGRTARAGKKGISFTFVTNKD 349
>gi|294657476|ref|XP_459782.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
gi|218512021|sp|Q6BPT8.2|DBP6_DEBHA RecName: Full=ATP-dependent RNA helicase DBP6
gi|199432720|emb|CAG88021.2| DEHA2E10912p [Debaryomyces hansenii CBS767]
Length = 576
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 114/203 (56%), Gaps = 27/203 (13%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q+++FSATL+ D KL L +P+L +N F+
Sbjct: 333 QKMIFSATLTTDAGKLSLLKFHKPRLII-------------------VNNKEQLVNEMFS 373
Query: 84 TPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
PA L+E + + ++LKPL+L + L+ K+ + VL F + + RL+RLL I N
Sbjct: 374 LPATLNEFKLQFGSAKSSLKPLILSKFLLSKNKLANVLIFTKSNDASLRLSRLLSLIMN- 432
Query: 140 ATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K +NIA + S + R+KI+++F ++ I+++VA+D +ARGID+ +I VINY
Sbjct: 433 --KLGSETINIAYINSTNNTTSVRSKILKDFSKQTINILVATDLIARGIDILSITDVINY 490
Query: 199 EAPDNIKKYIHRIGRTARGGRQG 221
+ P++ ++Y+HR+GRTAR ++G
Sbjct: 491 DLPNSSREYVHRVGRTARANQEG 513
>gi|423299961|ref|ZP_17277986.1| hypothetical protein HMPREF1057_01127 [Bacteroides finegoldii
CL09T03C10]
gi|408473770|gb|EKJ92292.1| hypothetical protein HMPREF1057_01127 [Bacteroides finegoldii
CL09T03C10]
Length = 421
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P+ +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + V+ F ++ +A+ L
Sbjct: 213 ---SKPAEKIIQAAYVCYENQKLGIIRSLFADEVPERVIIFASSKIKVKEVAKAL----- 264
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +++++VA+D +ARGID+++I +VIN+
Sbjct: 265 -----MAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVSEKE 352
>gi|298484048|ref|ZP_07002217.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|336402162|ref|ZP_08582904.1| hypothetical protein HMPREF0127_00217 [Bacteroides sp. 1_1_30]
gi|423213649|ref|ZP_17200178.1| hypothetical protein HMPREF1074_01710 [Bacteroides xylanisolvens
CL03T12C04]
gi|298269829|gb|EFI11421.1| ATP-dependent RNA helicase RhlE [Bacteroides sp. D22]
gi|335944483|gb|EGN06304.1| hypothetical protein HMPREF0127_00217 [Bacteroides sp. 1_1_30]
gi|392693578|gb|EIY86809.1| hypothetical protein HMPREF1074_01710 [Bacteroides xylanisolvens
CL03T12C04]
Length = 420
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P+ +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNDPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIIQAAYVCYENQKLGIIRSLFMDEVPERVIVFASSKIKVKEVAKALKSM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQRETVMHEFKAGRINILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T + E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFINEKE 352
>gi|373450995|ref|ZP_09542934.1| DEAD-box ATP-dependent RNA helicase cshA [Wolbachia pipientis
wAlbB]
gi|371931802|emb|CCE77952.1| DEAD-box ATP-dependent RNA helicase cshA [Wolbachia pipientis
wAlbB]
Length = 408
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 38/225 (16%)
Query: 8 GLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G I + + Y P Q L+FSATL D KL + L QP+ + D Q T+
Sbjct: 161 GFGIQIEGIMKYLPKIRQTLMFSATLPSDIVKLTEKYLNQPERVSV--------DCQATT 212
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
S + + + +E KL T QL ++ ++ FV T +GA
Sbjct: 213 SAKIKQEIV------YASESEKYGKLIT-----------QLCQRKG--SIIIFVKTKRGA 253
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+LA LH D A ++ DL+ +R ++I FRR + ++VA+D +RG
Sbjct: 254 DQLADKLHKDDYSAL----------AIHGDLRQHKRERVINSFRRGRNQIMVATDVASRG 303
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+ +I VINY+ P + Y+HRIGRTAR G +G +++ VT +
Sbjct: 304 LDIPHIQHVINYDVPQSQADYVHRIGRTARAGAEGFALSFVTPQD 348
>gi|189465693|ref|ZP_03014478.1| hypothetical protein BACINT_02054 [Bacteroides intestinalis DSM
17393]
gi|189433957|gb|EDV02942.1| DEAD/DEAH box helicase [Bacteroides intestinalis DSM 17393]
Length = 428
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SRPAEKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +++++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMHEFKAGRVNILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T + E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFINEKE 352
>gi|68473179|ref|XP_719395.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|74656492|sp|Q5ACK7.1|DRS1_CANAL RecName: Full=ATP-dependent RNA helicase DRS1
gi|46441210|gb|EAL00509.1| hypothetical protein CaO19.7635 [Candida albicans SC5314]
gi|238880416|gb|EEQ44054.1| hypothetical protein CAWG_02313 [Candida albicans WO-1]
Length = 613
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 107/204 (52%), Gaps = 35/204 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT++ + L QLSL +P +++P P S ++S + +F
Sbjct: 309 QTLLFSATMNTRIQDLIQLSLQKP--VRIMIDP-------PKS-------VASKLLQQFV 352
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
LKP +LYQL+ K V+ FV + AHRL +L +
Sbjct: 353 R--------IRKRDQLKPALLYQLL-KGVSSRVVVFVARKETAHRLRIVLGLLG------ 397
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ ++E++ L +QR + ++ F+ ++ +++ +D ARG+D+ I++VINY+ P
Sbjct: 398 ----LKVSELHGALTQEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKT 453
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
+ Y+HR+GRTAR GR GTS+T V
Sbjct: 454 FEIYLHRVGRTARAGRDGTSITFV 477
>gi|319902155|ref|YP_004161883.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
gi|319417186|gb|ADV44297.1| DEAD/DEAH box helicase domain protein [Bacteroides helcogenes P
36-108]
Length = 415
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 107/206 (51%), Gaps = 32/206 (15%)
Query: 37 EKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAEL-------S 89
+ + Q+ F PK +++ A T PT + A+N+ PAE+ +
Sbjct: 168 DDIMQIVKFLPKERQTIMFSA----TMPTKIQQLANNI-------LNNPAEVKLAVSKPA 216
Query: 90 EKLT----TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+K+ C N K ++ L + + V+ F ++ + + L +
Sbjct: 217 DKIVQAAYVCYENQKLGIIRNLFAEQTPERVIIFASSKLKVKEVTKALKQM--------- 267
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VINY+ P + +
Sbjct: 268 -KLNVGEMHSDLEQAQREDVMYEFKAGRINILVATDIVARGIDIDDIRLVINYDVPHDSE 326
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T ++ E
Sbjct: 327 DYVHRIGRTARANNDGVALTFISEKE 352
>gi|255722942|ref|XP_002546405.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
gi|240130922|gb|EER30484.1| ATP-dependent rRNA helicase RRP3 [Candida tropicalis MYA-3404]
Length = 483
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ LFSAT+++ EKL + SL P +
Sbjct: 240 PTKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 273
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
K+ T L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 274 SKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMSKSIIVFTRTVAHAQRTALLARIL--- 330
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N ++ L QR + +F+ ++++A+D ARG+D+ ++DVVI
Sbjct: 331 ----------GFNAVPLHGQLSQSQRLGSLNKFKSNTANILIATDVAARGLDIPSVDVVI 380
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 381 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 415
>gi|6323947|ref|NP_014017.1| ATP-dependent RNA helicase HAS1 [Saccharomyces cerevisiae S288c]
gi|2500537|sp|Q03532.1|HAS1_YEAST RecName: Full=ATP-dependent RNA helicase HAS1; AltName:
Full=Helicase associated with SET1 protein 1
gi|530347|emb|CAA56799.1| RNA helicase [Saccharomyces cerevisiae]
gi|151945998|gb|EDN64230.1| helicase associated with set1 [Saccharomyces cerevisiae YJM789]
gi|190408516|gb|EDV11781.1| RNA-dependent helicase [Saccharomyces cerevisiae RM11-1a]
gi|207342060|gb|EDZ69940.1| YMR290Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256270688|gb|EEU05851.1| Has1p [Saccharomyces cerevisiae JAY291]
gi|259148878|emb|CAY82123.1| Has1p [Saccharomyces cerevisiae EC1118]
gi|285814296|tpg|DAA10191.1| TPA: ATP-dependent RNA helicase HAS1 [Saccharomyces cerevisiae
S288c]
gi|323346981|gb|EGA81258.1| Has1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353213|gb|EGA85513.1| Has1p [Saccharomyces cerevisiae VL3]
gi|349580582|dbj|GAA25742.1| K7_Has1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297463|gb|EIW08563.1| Has1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 505
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV---- 269
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 270 ----------VCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 313
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 314 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 369
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 370 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
>gi|332525460|ref|ZP_08401618.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
gi|332108727|gb|EGJ09951.1| putative ATP-dependent RNA helicase 2 [Rubrivivax benzoatilyticus
JA2]
Length = 483
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + ++L S Q + V P T T
Sbjct: 196 PKTRQTLLFSATFSPEIKRLAG-SYLQDPVTVEVARPNATAST----------------- 237
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ ++ + K + Q++R+ + + FVN+ GA RLAR D +
Sbjct: 238 --------VEQRFYGVGDDDKRATVRQILRQRELSQAIVFVNSKLGAARLARSFER-DGL 288
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T+ ++ D D+R K + F+ ++DL+VA+D ARG+D+ ++ V N++
Sbjct: 289 KTQA---------LHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIADLPAVFNFD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P N + Y+HRIGRT R G G +VTLVT
Sbjct: 340 VPFNAEDYVHRIGRTGRAGASGLAVTLVT 368
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q +FSAT+S + E++ Q + QP+ V + A L+ I
Sbjct: 176 PTERQTAMFSATISREIERIAQKYMKQPEKIM-VAQKA----------------LTVPQI 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ + EK+ L + K + + C R +D +
Sbjct: 219 SQYYFEVKPHEKVEALCRILD-------MDKTDLGIIFC------------RTKRSVDEL 259
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K + A ++ DLK QR++++++FR R IDL+VA+D ARGIDV ++++V+NY+
Sbjct: 260 TEKLQNRGYSAAAIHGDLKQTQRDRVMKKFRNRTIDLLVATDVAARGIDVNDVEMVMNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P++ + Y+HRIGRT R G++G + TL T
Sbjct: 320 IPEDFEYYVHRIGRTGRAGKEGVAYTLAT 348
>gi|113195544|ref|NP_001037780.1| probable ATP-dependent RNA helicase DDX52 [Danio rerio]
gi|109150086|gb|AAI17611.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 [Danio rerio]
gi|182892172|gb|AAI65190.1| Ddx52 protein [Danio rerio]
Length = 606
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 39/207 (18%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
+R+LFSAT + D E+ +L+L DNL S IG
Sbjct: 350 RRVLFSATFATDVERWCKLNL---------------------------DNLVSVSIGARN 382
Query: 84 TPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ AE E+ L S N K L + LI++ + VL FV Q R AR L+H +
Sbjct: 383 SAAETVEQQLLFVGSENGKILAMRNLIKQGFLPPVLVFV---QSIDR-ARELYH--ELVY 436
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+G +N+ +++D QR+ ++ FR KI +++ + LARGID + I++VINY+ P
Sbjct: 437 EG----INVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFP 492
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +YIHRIGRT R G +G +VT T
Sbjct: 493 TSAVEYIHRIGRTGRAGHKGKAVTFFT 519
>gi|323332194|gb|EGA73605.1| Has1p [Saccharomyces cerevisiae AWRI796]
Length = 505
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV---- 269
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 270 ----------VCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 313
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 314 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 369
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 370 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
>gi|410666269|ref|YP_006918640.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
gi|409028626|gb|AFV00911.1| DEAD/DEAH box helicase [Simiduia agarivorans SA1 = DSM 21679]
Length = 434
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q LLFSAT S + L + + P L
Sbjct: 178 PDRRQNLLFSATFSDEIRALAKGLVHNP--------------------------LEIDIA 211
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ TT +++ L+ KP +L LI++H VL F T GA++LA+ L
Sbjct: 212 PRNTTVETVTQWLSPVDKKQKPALLIHLIKEHNWHQVLVFSRTKHGANKLAKQL------ 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ AG + A ++ + + R K + +F+ KI ++VA+D ARGID++ + V+N +
Sbjct: 266 --EDAG--LEAAAIHGNKSQNARTKALADFKANKIRVLVATDIAARGIDIDQLPQVVNVD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +G +V+LV E
Sbjct: 322 LPNVPEDYVHRIGRTGRAGAEGQAVSLVCADE 353
>gi|388580558|gb|EIM20872.1| DEAD-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 801
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 113/210 (53%), Gaps = 34/210 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ ++L +LSL +P +LF V+P ++ A L+ F
Sbjct: 384 PKNRQTMLFSATMTDKVDELVRLSLNKPVRLF---VDP----------KKSTAKGLTQEF 430
Query: 79 IG-KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ + + +L E+ T L L R+ Q + F + AHR+ R++ +
Sbjct: 431 VRIRSNSKNDLKERTAT---------LLSLCRRTFKQRTIIFFRSKALAHRM-RIMFGL- 479
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
++N E++ DL +QR ++ F+ +K D ++A+D +RG+D++ ++ VIN
Sbjct: 480 --------MELNAEELHGDLSQEQRLNALERFKNQKSDYLLATDLASRGLDIKGVETVIN 531
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
++ P+ I+ Y+HR+GRTAR G G SV+L+
Sbjct: 532 FDLPNQIEIYLHRVGRTARAGTSGRSVSLI 561
>gi|378754810|gb|EHY64839.1| hypothetical protein NERG_02242 [Nematocida sp. 1 ERTm2]
Length = 421
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 10/147 (6%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + ++ K + LY ++ + + FV T A R+ R+L +
Sbjct: 216 PENILQQYIYLPQKYKEMYLYSIVHNLGSRKCIVFVKTCITAERIERILRFLGESVCSIH 275
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
G K D R + I+ FRR K +++++D +ARG+D++ I V+INY+ PD
Sbjct: 276 GNKTQ----------DIRTETIEMFRRGKHSILISTDVVARGMDMDGIKVIINYDMPDGH 325
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K+YIHRIGRT R G G+S+TLVT ++
Sbjct: 326 KEYIHRIGRTGRAGEVGSSITLVTQYD 352
>gi|255691877|ref|ZP_05415552.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides
finegoldii DSM 17565]
gi|260622430|gb|EEX45301.1| DEAD/DEAH box helicase [Bacteroides finegoldii DSM 17565]
Length = 421
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P+ +
Sbjct: 178 PKERQTVMFSATM---PAKIQQL--------------ANTILNNPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + V+ F ++ +A+ L
Sbjct: 213 ---SKPAEKIIQAAYVCYENQKLGIIRSLFADEVPERVIIFASSKIKVKEVAKAL----- 264
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +++++VA+D +ARGID+++I +VIN+
Sbjct: 265 -----MAMKLNVGEMHSDLEQAQRETVMHEFKAGRVNILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVSEKE 352
>gi|118497286|ref|YP_898336.1| DEAD/DEAH box helicase [Francisella novicida U112]
gi|194323589|ref|ZP_03057366.1| conserved hypothetical protein, putative [Francisella novicida FTE]
gi|118423192|gb|ABK89582.1| DEAD-box subfamily ATP-dependent helicase [Francisella novicida
U112]
gi|194322444|gb|EDX19925.1| conserved hypothetical protein, putative [Francisella tularensis
subsp. novicida FTE]
Length = 569
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T + DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTST------IEVTDNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|213408188|ref|XP_002174865.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
gi|212002912|gb|EEB08572.1| ATP-dependent RNA helicase drs1 [Schizosaccharomyces japonicus
yFS275]
Length = 730
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ + L +LSL +P ++F + +A A L F
Sbjct: 406 PKSRQTMLFSATMTEKVDDLVRLSLNRPVRIFVD-------------AKKATAKRLVQEF 452
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I ++ L+P +L + + + V+ F AH++ R++ +
Sbjct: 453 I-----------RVRPQREQLRPAMLVHICKTFFHRRVIIFFRNKAFAHKM-RIIFGL-- 498
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++ L +QR + +++FR K+D ++A+D +RG+D++ ++ VINY
Sbjct: 499 -------VGLNATEIHGSLSQEQRVRALEDFRDGKVDYLLATDVASRGLDIKGVEFVINY 551
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
EAP + + Y+HR+GRTAR GR G +++LV
Sbjct: 552 EAPASHEIYLHRVGRTARAGRSGRAISLV 580
>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 656
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 65/96 (67%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D++ ++ + ++ D+K QR++++ FR ID+++A+D ARGIDV+++D+V
Sbjct: 257 VDDLMSRMQARGYFVEALHGDMKQQQRDRVMARFRSGSIDVLIATDVAARGIDVDDVDIV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +++ Y+HRIGRTAR GR G SVT V E
Sbjct: 317 FNYDVPQDVEYYVHRIGRTARAGRTGKSVTFVAPRE 352
>gi|68473005|ref|XP_719308.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|46441121|gb|EAL00420.1| hypothetical protein CaO19.7546 [Candida albicans SC5314]
gi|238880344|gb|EEQ43982.1| ATP-dependent rRNA helicase RRP3 [Candida albicans WO-1]
Length = 399
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LFSAT+++ EKL + SL P +
Sbjct: 155 PIKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 188
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
K+ T L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 189 SKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL--- 245
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N ++ L QR + +F+ + +++VA+D ARG+D+ ++DVVI
Sbjct: 246 ----------GFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVI 295
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 296 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 330
>gi|81294184|gb|AAI08030.1| Ddx52 protein [Danio rerio]
Length = 588
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 106/207 (51%), Gaps = 39/207 (18%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
+R+LFSAT + D E+ +L+L DNL S IG
Sbjct: 350 RRVLFSATFATDVERWCKLNL---------------------------DNLVSVSIGARN 382
Query: 84 TPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ AE E+ L S N K L + LI++ + VL FV Q R AR L+H +
Sbjct: 383 SAAETVEQQLLFVGSENGKILAMRNLIKQGFLPPVLVFV---QSIDR-ARELYH--ELVY 436
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+G +N+ +++D QR+ ++ FR KI +++ + LARGID + I++VINY+ P
Sbjct: 437 EG----INVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDFKGINLVINYDFP 492
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +YIHRIGRT R G +G +VT T
Sbjct: 493 TSAVEYIHRIGRTGRAGHKGKAVTFFT 519
>gi|66826815|ref|XP_646762.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
gi|74897375|sp|Q55BR9.1|DDX49_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx49; AltName:
Full=DEAD box protein 49
gi|60474611|gb|EAL72548.1| hypothetical protein DDB_G0270396 [Dictyostelium discoideum AX4]
Length = 508
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 104/217 (47%), Gaps = 40/217 (18%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
L P + Q LLFSAT++ + KL ++L +P +F DN
Sbjct: 175 LPPPEKRQTLLFSATMTKNLTKLDSIALNKPFIF--------------------EDN--- 211
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
K+ T L ++ K L +++KH + FVN
Sbjct: 212 ---SKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVE--------- 259
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKI--IQEFRRRKIDLVVASDNLARGIDVENIDV 194
A KG K++I V DQ++++ ++ F+ K+ ++VA+D +RG+D+ ++ +
Sbjct: 260 ---AVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQI 316
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ ++ K YIHR+GRTAR GR G +++ +T H+
Sbjct: 317 VINYKLSNSSKDYIHRVGRTARFGRSGRAISFITPHD 353
>gi|326383298|ref|ZP_08204986.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326198048|gb|EGD55234.1| DEAD/DEAH box helicase domain-containing protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 526
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 273 KAELVARVLQSEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 322
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR KID++VA+D ARGIDV+++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 323 VAREKALNKFREGKIDVLVATDVAARGIDVDDVTHVINYQCPDDEKTYVHRIGRTGRAGR 382
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 383 TGIAITLVDWDE 394
>gi|344303537|gb|EGW33786.1| ATP-dependent rRNA helicase RRP3 [Spathaspora passalidarum NRRL
Y-27907]
Length = 475
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ LFSAT+++ EKL + SL P +
Sbjct: 235 PTKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 268
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K+ T L + + K +L L+ ++ + ++ F T A R A L +
Sbjct: 269 SKYQTADNLVQSMMLVHDGYKNTILIHLLSEYEGKLIIVFTRTVAHAQRTALLCRILG-- 326
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
N ++ L QR + +F+ R ++++A+D ARG+D+ ++DVVINY+
Sbjct: 327 --------FNAVPLHGQLSQAQRLGSLNKFKSRSANILIATDVAARGLDIPSVDVVINYD 378
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 379 IPTDSKAYIHRVGRTARAGRSGKSISLITQYD 410
>gi|393788148|ref|ZP_10376279.1| hypothetical protein HMPREF1068_02559 [Bacteroides nordii
CL02T12C05]
gi|392656361|gb|EIY50000.1| hypothetical protein HMPREF1068_02559 [Bacteroides nordii
CL02T12C05]
Length = 413
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AKTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIVRSLFEEEVPERVIIFASSKIKVKEVAKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR I+ EF+ +I+++VA+D ++RGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|313147103|ref|ZP_07809296.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|424663494|ref|ZP_18100531.1| hypothetical protein HMPREF1205_03880 [Bacteroides fragilis HMW
616]
gi|313135870|gb|EFR53230.1| ATP-dependent RNA helicase [Bacteroides fragilis 3_1_12]
gi|404577184|gb|EKA81922.1| hypothetical protein HMPREF1205_03880 [Bacteroides fragilis HMW
616]
Length = 418
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PSKIQQL--------------ANTILNNPVEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPERVIIFASSKLKVKEVAKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR I+ EF+ +I+++VA+D ++RGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|208779079|ref|ZP_03246425.1| conserved hypothetical protein [Francisella novicida FTG]
gi|254374120|ref|ZP_04989602.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|151571840|gb|EDN37494.1| ATP-dependent RNA helicase [Francisella novicida GA99-3548]
gi|208744879|gb|EDZ91177.1| conserved hypothetical protein [Francisella novicida FTG]
Length = 569
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T + DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTST------IEVTDNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|154296868|ref|XP_001548863.1| hypothetical protein BC1G_12523 [Botryotinia fuckeliana B05.10]
Length = 818
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 111 HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170
H GVL F + + A RL+RLL I++ T GT + S + +R I F
Sbjct: 644 HEPHGVLIFTKSNESAIRLSRLLSLINDSYTNIIGT------LTSTTRSSERRASIASFS 697
Query: 171 RRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230
R K+ ++VASD ++RG+D+ ++ VINY+ P +I Y+HR+GRTAR GRQG++ TLV
Sbjct: 698 RGKLQILVASDLVSRGLDLPDLAHVINYDVPTSITNYVHRVGRTARAGRQGSAWTLVGNT 757
Query: 231 E 231
E
Sbjct: 758 E 758
>gi|423277384|ref|ZP_17256298.1| hypothetical protein HMPREF1203_00515 [Bacteroides fragilis HMW
610]
gi|404587133|gb|EKA91683.1| hypothetical protein HMPREF1203_00515 [Bacteroides fragilis HMW
610]
Length = 418
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PSKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPERVIIFASSKLKVKEVAKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR I+ EF+ +I+++VA+D ++RGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQREFIMHEFKSGRINILVATDIVSRGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|254565677|ref|XP_002489949.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|238029745|emb|CAY67668.1| Protein involved in rRNA processing [Komagataella pastoris GS115]
gi|328350360|emb|CCA36760.1| ATP-dependent RNA helicase [Komagataella pastoris CBS 7435]
Length = 478
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT+++ EKL + SL P + K++T
Sbjct: 251 LFSATMTNKIEKLQRASLVDP--------------------------IKVSVSSKYSTVD 284
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L K L L+ K+ + ++ F T A R A L +D A
Sbjct: 285 SLIQSLMVVPDGYKNTFLIYLLNKYQNKSIIIFTRTCAHAQRTALLARLMDFSAIP---- 340
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ L QR + +F+ R+ ++VA+D ARG+D+ +DVVIN++ P + K
Sbjct: 341 ------LHGQLNQSQRLGALNKFKARERTILVATDVAARGLDIPMVDVVINFDIPTDSKA 394
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LVT ++
Sbjct: 395 YIHRVGRTARAGRSGRSISLVTQYD 419
>gi|426197762|gb|EKV47689.1| hypothetical protein AGABI2DRAFT_185614 [Agaricus bisporus var.
bisporus H97]
Length = 433
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 100/205 (48%), Gaps = 35/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ + KL + SL T P + S F K+ T +
Sbjct: 177 LFSATMTANVTKLQRASL-----------------TDPVRVDV------SSF--KYKTVS 211
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + C K ++L LI A ++ FV T A RL+ +L ++ A
Sbjct: 212 TLLQYYVLCPLVNKEVMLVYLINSMAQNTIIVFVRTVADAKRLSIVLRTLEFQAVP---- 267
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ +L QR F+ K +++VA+D +RG+DV N+DVVINY+ P + K
Sbjct: 268 ------LHGELSQSQRLGAFNRFKSGKSNILVATDLASRGLDVANVDVVINYDTPTSSKD 321
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HR+GRTAR GR G S+ +V+ ++
Sbjct: 322 YVHRVGRTARAGRAGKSILMVSQYD 346
>gi|410612261|ref|ZP_11323341.1| probable ATP-dependent RNA helicase exp9 [Glaciecola psychrophila
170]
gi|410168262|dbj|GAC37230.1| probable ATP-dependent RNA helicase exp9 [Glaciecola psychrophila
170]
Length = 394
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+S++ L + S+++P + S+ +
Sbjct: 176 PEQRQNLLFSATISNEVRALAKRSIYRP-VEISIKQ------------------------ 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K +TP ++ + L T K +L LI++ L F+ T QGA +L + +
Sbjct: 211 NKASTP-KIEQWLVTVDKGNKSALLSHLIKEQEWDQALIFIETKQGAAKL------VSQL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G + + ++ D R +I+ +F+ +I +VA+ ARG+D++N+ V+NY+
Sbjct: 264 EKRG----IPVESIHGDRTQAVRERILSDFKSGQIKFLVATGVAARGLDIQNLSRVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD ++ YIHRIGRT R G G +++ V
Sbjct: 320 VPDQVEDYIHRIGRTGRAGATGEAISFVA 348
>gi|293603664|ref|ZP_06686084.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
gi|292817932|gb|EFF76993.1| ATP-dependent RNA helicase RhlE [Achromobacter piechaudii ATCC
43553]
Length = 493
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S++ KL + L QP E A N ++
Sbjct: 196 PAQRQGLLFSATFSNEIRKLGRSYL-----------------NQPVEIEVAARNATA--- 235
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT +++ K+ S++ K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 236 ---TTITQIAYKM---SSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-DGV 288
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ ++++VA+D ARG+DV + VINY+
Sbjct: 289 KAE---------SIHGDKTQADRMKALEAFKAGDLEVLVATDVAARGLDVAGVPCVINYD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 340 LPYNAEDYVHRIGRTGRAGASGEAIALFTPDE 371
>gi|254372659|ref|ZP_04988148.1| ATP-dependent RNA helicase [Francisella tularensis subsp. novicida
GA99-3549]
gi|151570386|gb|EDN36040.1| ATP-dependent RNA helicase [Francisella novicida GA99-3549]
Length = 569
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T + DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTST------IEVTDNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|347827854|emb|CCD43551.1| hypothetical protein [Botryotinia fuckeliana]
Length = 814
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 73/121 (60%), Gaps = 6/121 (4%)
Query: 111 HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170
H GVL F + + A RL+RLL I++ T GT + S + +R I F
Sbjct: 640 HEPHGVLIFTKSNESAIRLSRLLSLINDSYTNIIGT------LTSTTRSSERRASIASFS 693
Query: 171 RRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230
R K+ ++VASD ++RG+D+ ++ VINY+ P +I Y+HR+GRTAR GRQG++ TLV
Sbjct: 694 RGKLQILVASDLVSRGLDLPDLAHVINYDVPTSITNYVHRVGRTARAGRQGSAWTLVGNT 753
Query: 231 E 231
E
Sbjct: 754 E 754
>gi|423225777|ref|ZP_17212244.1| hypothetical protein HMPREF1062_04430 [Bacteroides cellulosilyticus
CL02T12C19]
gi|392631362|gb|EIY25335.1| hypothetical protein HMPREF1062_04430 [Bacteroides cellulosilyticus
CL02T12C19]
Length = 422
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SRPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|126659493|ref|ZP_01730626.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
gi|126619227|gb|EAZ89963.1| ATP-dependent RNA helicase; DeaD [Cyanothece sp. CCY0110]
Length = 478
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T Q A L L I + ++ E + +L QR +++ FR K
Sbjct: 243 ESAIIFVRTKQTASDLTSKLQEIGH----------SVDEYHGNLSQSQRERLVHRFRDGK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
I LVVA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT+++L+
Sbjct: 293 IKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLI 346
>gi|410630675|ref|ZP_11341362.1| cold-shock DEAD box protein A [Glaciecola arctica BSs20135]
gi|410149641|dbj|GAC18229.1| cold-shock DEAD box protein A [Glaciecola arctica BSs20135]
Length = 394
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+S + L + S+ P VE + D
Sbjct: 176 PEHRQNLLFSATISDEVRALAKRSINNP------VEISIKQD------------------ 211
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K ++P ++ + L T K +L LI++ L F+ T QGA +L + +
Sbjct: 212 -KSSSP-KIEQWLVTVDKGNKSALLSHLIKEQQWDQALIFIETKQGAAKL------VSQL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G T+ ++ D R KI+ +F+ KI +VA+ ARG+D++N+ V+NY+
Sbjct: 264 EKRGIPTE----SIHGDRTQGMREKILADFKSGKIKFLVATGVAARGLDIQNLSRVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
PD ++ YIHRIGRT R G G +++ V
Sbjct: 320 VPDQVEDYIHRIGRTGRAGATGEAISFV 347
>gi|385792629|ref|YP_005825605.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|328676775|gb|AEB27645.1| Cold-shock DEAD-box protein A [Francisella cf. novicida Fx1]
Length = 569
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 96/208 (46%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + + L P K
Sbjct: 185 QRLLFSATIPTDIADIIEEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T + DN+ K
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLETEETDGVIIFVKTKTST------IEVTDNL--KA 270
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K +A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 271 LGYK--VAAINGDMQQSQREYIVDQFRSAKSDILVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+GTS++LV E
Sbjct: 329 TDTYVHRIGRTGRAGREGTSISLVPLKE 356
>gi|281202503|gb|EFA76705.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 1173
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LL+SAT+++ +KL + + P +F DN
Sbjct: 832 PPKIQTLLYSATMTNSNKKLESIPIKNPYIF--------------------EDN------ 865
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K+ T LS+ K L L++KH V+ F+N +
Sbjct: 866 NKYDTVETLSQYYVFMPAQAKDCHLVYLLKKHDSSSVIVFINNCRTVE------------ 913
Query: 140 ATKGAGTKMNIAEV--YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A KG K++I V +S L R +++F+ KI +++A+D +RG+D+ ++ +VIN
Sbjct: 914 AVKGMLNKLDIKSVSLHSFLSQKDRLNALKQFKSGKIRVLIATDVASRGLDIPDVQMVIN 973
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ ++ K YIHR+GRTAR GR G +++ VT H+
Sbjct: 974 YKLSNSSKDYIHRVGRTARFGRSGRAISFVTPHD 1007
>gi|350544972|ref|ZP_08914491.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527233|emb|CCD38619.1| ATP-dependent RNA helicase Bcep18194_A5658 [Candidatus Burkholderia
kirkii UZHbot1]
Length = 493
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N ++ +
Sbjct: 196 PKECQTLLFSATFSAEIKKLASTYLRNPQTI-----------------EVARSNSTNANV 238
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ S+K + QLIR+ ++ V+ F N+ GA RLAR+L V
Sbjct: 239 RQIVYEVHESDKSGAVA---------QLIRERKLKQVIVFCNSKIGASRLARVLERDGIV 289
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 290 ATA----------IHGDRTQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 340 LPFNAEDYVHRIGRTGRAGASGDALSLCSANE 371
>gi|343520590|ref|ZP_08757559.1| DEAD/DEAH box helicase [Parvimonas sp. oral taxon 393 str. F0440]
gi|343397548|gb|EGV10082.1| DEAD/DEAH box helicase [Parvimonas sp. oral taxon 393 str. F0440]
Length = 474
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 62/79 (78%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++ DLK QR+ ++ +FR ID++VA+D ARGIDV+++D+VINY+ P +++ Y+HRIG
Sbjct: 271 LHGDLKQIQRDGVMNKFRNSTIDILVATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIG 330
Query: 213 RTARGGRQGTSVTLVTTHE 231
RTAR GR+GT+++ V+ E
Sbjct: 331 RTARAGREGTAISFVSPRE 349
>gi|395779738|ref|ZP_10460207.1| hypothetical protein MCW_00294 [Bartonella washoensis 085-0475]
gi|395420113|gb|EJF86398.1| hypothetical protein MCW_00294 [Bartonella washoensis 085-0475]
Length = 470
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 36/203 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LFSAT+S + L + L P + P GT
Sbjct: 197 QTALFSATMSKEVSALAKFLLNDPVRIE--IAPQGT------------------------ 230
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T AE+++KL T K VL QL+ A V+ F T GA + R L I
Sbjct: 231 TVAEITQKLYCVPTREKKNVLAQLLTNPAFISVIVFTRTKHGADAVTRSLAKIG------ 284
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++A ++ + R ++ FR R + ++VA+D ARGIDV I VINY+ PD
Sbjct: 285 ----YSVATIHGNKSHSARQYALKAFRERSVRILVATDIAARGIDVSGISHVINYDLPDE 340
Query: 204 IKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 341 AESYVHRIGRTGRNGASGNALTL 363
>gi|392550185|ref|ZP_10297322.1| ATP-dependent RNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 432
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT + + L L +P+L VE A T
Sbjct: 174 PNKRQTLMFSATFTDQIKTLANTMLHEPQLIE--VEAANT-------------------- 211
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T + + L N K VL L+ KH Q VL F T QGA L L
Sbjct: 212 ----TVDNIKQTLYHVDKNQKSNVLIHLLSKHNWQQVLVFSRTKQGADTLVTTL------ 261
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K AG ++ ++++ R + + F+ I ++VA+D ARGID+ ++ VINY+
Sbjct: 262 --KEAG--ISAESIHANRTQHARTEALAAFKNNDIKVLVATDIAARGIDINHLPCVINYD 317
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G++G S++L ++ E
Sbjct: 318 LPYVAEDYVHRIGRTGRAGKKGVSISLFSSDE 349
>gi|170727862|ref|YP_001761888.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169813209|gb|ACA87793.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 413
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 36/207 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT L + L PKL E G N ++G
Sbjct: 180 PKERQTLLFSATFDDGVFNLSKRLLKDPKLI-----------------EVGKRNAAAG-- 220
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ +++ + K +L LI + VL F QGA D +
Sbjct: 221 -------KVEQRVYAVDADRKSELLCHLILSKKWRQVLIFSRKKQGA----------DKL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A K + + DL R K++QEF+ ++ ++VA+D ARG+DVE+++VV+NYE
Sbjct: 264 AAKLVNEGVKALAFHGDLSQSVREKVLQEFKSGELQVLVATDVAARGLDVESLEVVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTL 226
P + Y+HRIGRT R G G ++TL
Sbjct: 324 LPFVAEDYVHRIGRTGRAGNSGLAITL 350
>gi|409083507|gb|EKM83864.1| hypothetical protein AGABI1DRAFT_117335, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 701
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL +P +LF V+P T +
Sbjct: 369 SCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLF---VDPKRT--------------TAR 411
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G I +F ++ + +L L R+ + V+ F+ + + AH++ R++ +
Sbjct: 412 GLIQEFV-------RVRAGKEAERSAMLVTLCRRTFKRRVIVFLRSKKLAHQM-RIVFSL 463
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M E++ DL +QR + +Q FR +D ++A+D +RG+D++ ++ VI
Sbjct: 464 ---------LGMKCEELHGDLSQEQRLRALQLFRDDAVDFLMATDLASRGLDIKGVETVI 514
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR GR G +VTLV
Sbjct: 515 NYDMPTQLAQYLHRVGRTARAGRGGRAVTLV 545
>gi|367001072|ref|XP_003685271.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
gi|357523569|emb|CCE62837.1| hypothetical protein TPHA_0D01990 [Tetrapisispora phaffii CBS 4417]
Length = 498
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ EKL + SL P + K+ T
Sbjct: 255 LFSATMTSKIEKLQRASLTNP--------------------------VKCAVSNKYQTVE 288
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ +T
Sbjct: 289 TLVQTLMVVPGGLKNTYLIYLLNEFIGKSIIVFTRTKANAERLSALSNLLEFSSTA---- 344
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA D ARG+D+ ++D+VINY+ P + K
Sbjct: 345 ------LHGDLNQNQRTGALDLFKAGKRQILVAIDVAARGLDIPSVDIVINYDIPVDSKS 398
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 399 YIHRVGRTARAGRSGKSISLVSQYD 423
>gi|212557802|gb|ACJ30256.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 446
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSATLSH + L + ++ +P + SV+ D++P
Sbjct: 176 PADRQSLLFSATLSHQVKALAKTAIDKP-VEISVI---ANTDSKP--------------- 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ + LTT + K +L LI++++ L F+ T QGA +L + +
Sbjct: 217 -------KIEQWLTTVDKDKKSALLSHLIKENSWHQALIFIETKQGAAKL------VSQL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G +N ++ + R KI+ +F+ +I L++A+ ARG+D++ + +VINY+
Sbjct: 264 EKRG----INAECIHGGRSQEVREKILADFKAGEIGLLIATGVAARGLDIDELPLVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P YIHRIGRT R G G +V+LV+ +
Sbjct: 320 LPYPADDYIHRIGRTGRAGANGEAVSLVSKDD 351
>gi|224539911|ref|ZP_03680450.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518465|gb|EEF87570.1| hypothetical protein BACCELL_04822 [Bacteroides cellulosilyticus
DSM 14838]
Length = 435
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SRPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +VINY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIVARGIDIDDIRLVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|296423635|ref|XP_002841359.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637596|emb|CAZ85550.1| unnamed protein product [Tuber melanosporum]
Length = 627
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDN-VATKGAGTKMNIAEVYSDLKFDQRNKII 166
+RK +M + F ++ A RL+ LL + A T + S+ QR + I
Sbjct: 459 LRKPSMIATIIFTSSNSTATRLSTLLSTFSSHPAAPPPATSWITKCITSETPRKQRARYI 518
Query: 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
F + + ++V SD +ARG+D+EN+ +VINYE P +++ Y+HR+GRTAR GR G +V+L
Sbjct: 519 HAFTKGEAGILVCSDLVARGLDIENVAIVINYEVPASVRGYVHRVGRTARAGRNGVAVSL 578
Query: 227 VTTHE 231
V E
Sbjct: 579 VGEKE 583
>gi|238019582|ref|ZP_04600008.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
gi|237864281|gb|EEP65571.1| hypothetical protein VEIDISOL_01451 [Veillonella dispar ATCC 17748]
Length = 432
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT+ P+K+ L+ K + S +P S A GK
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPASVTAE---------GKHV 210
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +++ +T K L ++I + + F N +GA RL+ L
Sbjct: 211 TLESIDQRVYMMNTEEKTQRLIKMIEEDNPFLAIVFCNKREGAVRLSYEL--------TA 262
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+ P +
Sbjct: 263 AG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDVPRD 320
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGRT R G G +VT T +
Sbjct: 321 VDYYIHRIGRTGRAGNSGVAVTFATPQD 348
>gi|325269118|ref|ZP_08135738.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
multiformis DSM 16608]
gi|324988505|gb|EGC20468.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella
multiformis DSM 16608]
Length = 572
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 106/213 (49%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
++ + C K ++ + + ++ V+ F + Q ++A L
Sbjct: 218 -------EKIHQMAYVCYETQKIGIIKDIFKAGDLKRVIIFSGSKQKVKQIAASLSR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL +QRN ++ +F+ +ID++VA+D +ARGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGIDIDDITMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR R G ++T V+ +
Sbjct: 321 DVPHDAEDYVHRIGRTARADRDGKAITFVSVDD 353
>gi|420246760|ref|ZP_14750191.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
gi|398073382|gb|EJL64557.1| DNA/RNA helicase, superfamily II, partial [Burkholderia sp. BT03]
Length = 411
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL L P+ E N
Sbjct: 190 PAERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + +LIR ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQIVYEVAEGDKTGAVVKLIRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRTQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + HE
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLFSPHE 365
>gi|319790474|ref|YP_004152107.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
gi|317114976|gb|ADU97466.1| DEAD/DEAH box helicase domain protein [Thermovibrio ammonificans
HB-1]
Length = 417
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 87/153 (56%), Gaps = 10/153 (6%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+GK ++ +++ + K L +L+++H + FV T + A + + L
Sbjct: 206 VGKQLITPKVKQRIILVRSEDKIKALEKLLKEHEGVSTIVFVKTKRDAADIEKELQR--- 262
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+G +N ++ DL QR +++ FR K+ ++VA+D ARGID++++ +VINY
Sbjct: 263 ---RG----INARAIHGDLSQRQREFVMRAFREGKVKVLVATDVAARGIDIKDVGLVINY 315
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
E P+N + Y+HRIGRT R GR+G +++LV E
Sbjct: 316 ELPENPESYVHRIGRTGRAGREGLAISLVAEPE 348
>gi|255071295|ref|XP_002507729.1| predicted protein [Micromonas sp. RCC299]
gi|226523004|gb|ACO68987.1| predicted protein [Micromonas sp. RCC299]
Length = 523
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 26/210 (12%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
R ++LLFSATL+ DP +L L L P ++VV S+A +N +
Sbjct: 250 RLKKLLFSATLTQDPGRLAGLHLKAPHRISTVV------------SQAMREN-------R 290
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ P L E + + K LVL L+++ + F + RL RLLH + + +
Sbjct: 291 YFLPPGLKEYVIISRGDEKLLVLCALLKRIGPTPAIVFTASVDATRRLFRLLHLMIGLPS 350
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
K E S R + ++ FR + L+VASD RG+D E++ V I+Y+ P
Sbjct: 351 KPV-------EYSSYAPLLHRTESLKLFRSGRCSLLVASDAATRGLDFEHVGVTISYDVP 403
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ K Y+HR+GR AR R+G + T+ E
Sbjct: 404 THPKTYVHRVGRAARAQRRGLAYTICRPTE 433
>gi|408382716|ref|ZP_11180258.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
gi|407814518|gb|EKF85143.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
formicicum DSM 3637]
Length = 526
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 87/151 (57%), Gaps = 11/151 (7%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+ T P E+ + +K +L +LI H ++ L F NT + RL + N+
Sbjct: 211 EITVP-EIQQIYFEVKEQMKLDLLTRLIDMHNLKLALVFCNTKRRVDRL------VSNLQ 263
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T+G ++ D+ +QR++++ +FR+ +I+++VA+D ARGIDV++++ V NY+
Sbjct: 264 TRGYFAD----GLHGDMSQNQRDRVMNKFRKGQIEILVATDVAARGIDVDDVEAVFNYDV 319
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+N + Y+HRIGRT R GR G + T + E
Sbjct: 320 PNNEEYYVHRIGRTGRAGRTGQAFTFASGKE 350
>gi|412987541|emb|CCO20376.1| predicted protein [Bathycoccus prasinos]
Length = 843
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 113/231 (48%), Gaps = 41/231 (17%)
Query: 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
+G L + + P + Q LLFSATL+ E+L LS+ P +
Sbjct: 372 MGFLEEIKEIVRNMPRQRQTLLFSATLTSAVEELASLSMRNPARLS-------------- 417
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL----KPLVLYQLIRKHAMQGVLCFVN 121
AD+L TTP L+E++ + +L L R + + F
Sbjct: 418 -----ADSLG-------TTPMTLTEEIVKIKPQFVAKKEAHLLSLLSRSFKGKETIVFAK 465
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR-KIDLVVAS 180
T AHRL +++ + N+ E++ D+ QR +++FR + ++VA+
Sbjct: 466 TKVQAHRL-KIVLGLSNI---------KACELHGDMTQTQRLAALEDFRSNAETKIMVAT 515
Query: 181 DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D ARG+D+ ++D+V++Y+AP N+ Y+HR+GRTAR GR+G ++T + ++
Sbjct: 516 DVAARGLDIASVDLVVSYDAPKNVASYLHRVGRTARAGRKGVAITFMEEYD 566
>gi|441520555|ref|ZP_21002221.1| putative ATP-dependent RNA helicase [Gordonia sihwensis NBRC
108236]
gi|441459715|dbj|GAC60182.1| putative ATP-dependent RNA helicase [Gordonia sihwensis NBRC
108236]
Length = 536
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 271 KAELVARVLQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 320
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR KID++VA+D ARGIDV+++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 321 VAREKALNKFRDGKIDVLVATDVAARGIDVDDVTHVINYQCPDDDKTYVHRIGRTGRAGR 380
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 381 TGIAITLVDWDE 392
>gi|426201453|gb|EKV51376.1| hypothetical protein AGABI2DRAFT_114110 [Agaricus bisporus var.
bisporus H97]
Length = 754
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 111/211 (52%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P Q +LFSAT++ ++L ++SL +P +LF V+P T +
Sbjct: 369 SCPRSRQTMLFSATMTDSVDELVRVSLEKPVRLF---VDPKRT--------------TAR 411
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G I +F ++ + +L L R+ + V+ F+ + + AH++ R++ +
Sbjct: 412 GLIQEFV-------RVRAGKEAERSAMLVTLCRRTFKRRVIVFLRSKKLAHQM-RIVFSL 463
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M E++ DL +QR + +Q FR +D ++A+D +RG+D++ ++ VI
Sbjct: 464 ---------LGMKCEELHGDLSQEQRLRALQLFRDDAVDFLMATDLASRGLDIKGVETVI 514
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR GR G +VTLV
Sbjct: 515 NYDMPTQLAQYLHRVGRTARAGRGGRAVTLV 545
>gi|413963140|ref|ZP_11402367.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
gi|413928972|gb|EKS68260.1| DEAD/DEAH box helicase [Burkholderia sp. SJ98]
Length = 493
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N ++ +
Sbjct: 196 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSNSTNANV 238
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ S+K + QLIR+ ++ V+ F N+ GA RLAR+L V
Sbjct: 239 RQIVYEVHESDKSGAVA---------QLIRERELKQVIVFCNSKIGASRLARVLEKDGIV 289
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 290 ATA----------IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 340 LPFNAEDYVHRIGRTGRAGASGDALSLCSANE 371
>gi|422293255|gb|EKU20555.1| dead deah box rna, partial [Nannochloropsis gaditana CCMP526]
Length = 414
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSAT++ KL + SL T P EA KFTTP
Sbjct: 214 LLFSATMTSKVAKLQRASL-----------------TDPVKVEAS---------DKFTTP 247
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
L ++ K L + + A Q +L FV T A RLA LL ++ G G
Sbjct: 248 RTLVQQYLFIPAKYKDCYLAYALNEAAGQTILVFVATCNNAQRLALLLRNL------GFG 301
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ + +R + +F+ + +++A+D +RG+D+ +D+VIN++ P + K
Sbjct: 302 AIC----LHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLDIPAVDLVINFDIPSHGK 357
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S+ +VT ++
Sbjct: 358 DYIHRVGRTARAGRAGRSIAMVTQYD 383
>gi|401626153|gb|EJS44112.1| has1p [Saccharomyces arboricola H-6]
Length = 505
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV---- 269
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 270 ----------VCDSDDRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 313
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 314 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 369
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 370 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
>gi|91775610|ref|YP_545366.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
gi|91709597|gb|ABE49525.1| DEAD/DEAH box helicase-like protein [Methylobacillus flagellatus
KT]
Length = 460
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 107/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL + L +P L + S A ++N++
Sbjct: 193 PKQRQNLMFSATFSPEIKKLSEEFLTKPVLI------------EVARSNATSENVT---- 236
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+K+ + K VL L+RK A Q V+ F T A RLAR L + +
Sbjct: 237 ----------QKILLVESEHKQHVLADLLRKEATQ-VIVFTKTKLSASRLARHLER-EGI 284
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A GA ++ D +R + + F++ KI +VA+D ARG+D++ + +V+NYE
Sbjct: 285 AA-GA--------IHGDKSQLERIQALDAFKQGKITALVATDVAARGLDIDQLPMVVNYE 335
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G G +++LV++ E
Sbjct: 336 LPSAAEDYVHRIGRTGRAGASGIAISLVSSEE 367
>gi|161784286|sp|Q5ACU6.2|RRP3_CANAL RecName: Full=ATP-dependent rRNA helicase RRP3
Length = 539
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 100/215 (46%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LFSAT+++ EKL + SL P +
Sbjct: 295 PIKRTTYLFSATMTNKIEKLQRASLHNP--------------------------VRVAVS 328
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
K+ T L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 329 SKYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTALLARIL--- 385
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N ++ L QR + +F+ + +++VA+D ARG+D+ ++DVVI
Sbjct: 386 ----------GFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVI 435
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 436 NYDIPTDSKAYIHRVGRTARAGRSGKSISLITQYD 470
>gi|67920440|ref|ZP_00513960.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|416377119|ref|ZP_11683540.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
gi|67857924|gb|EAM53163.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Crocosphaera watsonii WH 8501]
gi|357266298|gb|EHJ14951.1| Cold-shock DEAD-box protein A [Crocosphaera watsonii WH 0003]
Length = 480
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T Q A L L I + ++ E + +L QR +++ FR K
Sbjct: 243 ESAIIFVRTKQTASELTTRLQEIGH----------SVDEYHGNLSQSQRERLVYRFRDGK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
I LVVA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT+++L+
Sbjct: 293 IKLVVATDIAARGLDVENLSHVINYDLPDNSETYIHRIGRTGRAGKTGTAISLI 346
>gi|88812119|ref|ZP_01127371.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
gi|88790623|gb|EAR21738.1| probable atp-dependent rna helicase protein [Nitrococcus mobilis
Nb-231]
Length = 429
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + KL L P + DT P +S A
Sbjct: 175 PQKRQNLLFSATFSGEIRKLADQILHDP----------ASVDTAPRNSVAEL-------- 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ K+ + + K +L LI VL F T GA+RLA L
Sbjct: 217 --------ITHKVHPVAQSRKRALLAHLIGNGKWSQVLVFTRTKHGANRLATQLDR---- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+N ++S R K +Q+F+R ++ ++VA+D ARG+D+E + V+NYE
Sbjct: 265 ------DGLNATAIHSSKSQSARTKALQDFKRGRVRVLVATDIAARGLDIEALPHVVNYE 318
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRT R G QG +V+LV+ E
Sbjct: 319 LSNIAEDYVHRIGRTGRAGSQGQAVSLVSADE 350
>gi|307729080|ref|YP_003906304.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1003]
gi|307583615|gb|ADN57013.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1003]
Length = 487
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ +++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARSLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|325833432|ref|ZP_08165881.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
gi|325485356|gb|EGC87825.1| ATP-dependent RNA helicase RhlE [Eggerthella sp. HGA1]
Length = 560
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT+ H +K L P +VVE A G+T T +
Sbjct: 228 PADRQTLLFSATIDHSIQKNLGSLLNDP----AVVEIARNGETAQT-------------V 270
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F P + KP +L L+ + V+ F AR + ++
Sbjct: 271 EQFMMP---------IANFKKPELLQALLEEKGSDRVIVF----------ARTKNRTEDC 311
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++SD QR + + FRR + ++VA+D LARGIDV ++D VIN++
Sbjct: 312 AEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFD 371
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD + Y+HRIGRT R G QG +V+ VT
Sbjct: 372 LPDMPEDYVHRIGRTGRAGEQGFAVSFVT 400
>gi|298674218|ref|YP_003725968.1| DEAD/DEAH box helicase [Methanohalobium evestigatum Z-7303]
gi|298287206|gb|ADI73172.1| DEAD/DEAH box helicase domain protein [Methanohalobium evestigatum
Z-7303]
gi|452077305|gb|AGF93269.1| DEAD/DEAH box helicase domain-containing protein [uncultured
organism]
Length = 431
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 103/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LFSAT+ K+ + P+L +V +
Sbjct: 175 PDKRQTTLFSATMPGPIMKMTKKYQDNPELIKTVHK------------------------ 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K T P ++ + KP L +L + ++ L F NT +G L ++ +
Sbjct: 211 -KLTVP-QVEQTYFEVKERSKPEALCRLTDFYNIKSSLVFCNTKKGVDNL------VETL 262
Query: 140 ATKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
T+G +A+ ++ D+K QR+K++ F+ +I+ +VA+D ARGIDVENI+VV NY
Sbjct: 263 KTRGY-----LADGLHGDMKQKQRDKVMSNFKNGEIETLVATDVAARGIDVENIEVVFNY 317
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRT R G+QG + T E
Sbjct: 318 DVPQDEESYVHRIGRTGRAGKQGKAFTFAFGKE 350
>gi|335048107|ref|ZP_08541127.1| DEAD-box ATP-dependent RNA helicase CshA [Parvimonas sp. oral taxon
110 str. F0139]
gi|333757907|gb|EGL35465.1| DEAD-box ATP-dependent RNA helicase CshA [Parvimonas sp. oral taxon
110 str. F0139]
Length = 580
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 62/79 (78%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++ DLK QR+ ++ +FR ID++VA+D ARGIDV+++D+VINY+ P +++ Y+HRIG
Sbjct: 271 LHGDLKQIQRDGVMNKFRNSTIDILVATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIG 330
Query: 213 RTARGGRQGTSVTLVTTHE 231
RTAR GR+GT+++ V+ E
Sbjct: 331 RTARAGREGTAISFVSPRE 349
>gi|313887901|ref|ZP_07821580.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846067|gb|EFR33449.1| DEAD-box ATP-dependent RNA helicase CshA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 544
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 39/215 (18%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T P R Q L FSAT +D ++ +L +Q V+PA
Sbjct: 172 TNPDR-QTLFFSATFDNDIKEFSRL--YQ-------VDPAKV------------------ 203
Query: 78 FIGKFTTPAELSEKL-TTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
I K AE E+ + N+K +L +LI H + + F NT + L
Sbjct: 204 IIEKKELTAEKIEQFYLELNRNMKTEILNRLILIHKPKKSIIFCNTKRMVEALEL----- 258
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+A +G + ++ D++ R+ ++++FR ID+++A+D ARG+DV +ID+V
Sbjct: 259 -EIAQRG----YKVDSLHGDMRQSSRDNVMKKFRNGTIDVLIATDVAARGLDVSDIDLVF 313
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + Y+HRIGRTAR G++G S T VT+ +
Sbjct: 314 NYDLPQQAEYYVHRIGRTARAGKKGASFTFVTSRD 348
>gi|160946735|ref|ZP_02093938.1| hypothetical protein PEPMIC_00693 [Parvimonas micra ATCC 33270]
gi|158447119|gb|EDP24114.1| DEAD/DEAH box helicase [Parvimonas micra ATCC 33270]
Length = 580
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 62/79 (78%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++ DLK QR+ ++ +FR ID++VA+D ARGIDV+++D+VINY+ P +++ Y+HRIG
Sbjct: 271 LHGDLKQIQRDGVMNKFRNSTIDILVATDVAARGIDVDDVDLVINYDMPQDVEYYVHRIG 330
Query: 213 RTARGGRQGTSVTLVTTHE 231
RTAR GR+GT+++ V+ E
Sbjct: 331 RTARAGREGTAISFVSPRE 349
>gi|186476836|ref|YP_001858306.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phymatum STM815]
gi|184193295|gb|ACC71260.1| DEAD/DEAH box helicase domain protein [Burkholderia phymatum
STM815]
Length = 482
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PTERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ +++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLFSPNE 365
>gi|367006945|ref|XP_003688203.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
gi|357526510|emb|CCE65769.1| hypothetical protein TPHA_0M01940 [Tetrapisispora phaffii CBS 4417]
Length = 668
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 109/216 (50%), Gaps = 35/216 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P +++FSATL+ + EKLH L + PKLF VV+ +
Sbjct: 395 PGNIIKMVFSATLTTNTEKLHSLQFYHPKLF--VVDS----------------------V 430
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+ P +L E + T + KPL L +L+ + + VL FV + Q + RL LL +
Sbjct: 431 KLYNIPKKLQEFNFAIPTAKSIYKPLFLLRLLDQLSNAKVLVFVKSNQNSLRLTSLLSKL 490
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR--RRKIDL---VVASDNLARGIDVEN 191
+ G K I V S+ KI+ +F R K D+ ++ +D ++RGID+ N
Sbjct: 491 ---IEQNLGKKHTIESVNSNNSRGTNRKIVNDFSDDRLKKDVCTVLITTDIMSRGIDINN 547
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
I VINY+ P + ++Y+HR+GRTAR G +GT+ L+
Sbjct: 548 ITDVINYDLPISSQQYVHRVGRTARAGTEGTTYNLL 583
>gi|325860554|ref|ZP_08173658.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
18C-A]
gi|325481939|gb|EGC84968.1| putative cold-shock DEAD-box protein A [Prevotella denticola CRIS
18C-A]
Length = 572
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 43/215 (20%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHI 136
++ + C K ++ + + ++ V+ F + Q ++A L HI
Sbjct: 218 -------EKIHQMAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHI 270
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N E++SDL +QRN ++ +F+ +ID++VA+D +ARGID+++I +VI
Sbjct: 271 ------------NCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGIDIDDIAMVI 318
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + + Y+HRIGRTAR R G ++T V +
Sbjct: 319 NYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDD 353
>gi|302695203|ref|XP_003037280.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
gi|300110977|gb|EFJ02378.1| hypothetical protein SCHCODRAFT_73122 [Schizophyllum commune H4-8]
Length = 771
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q +LFSAT++ ++L ++SL +P +LF P S A G
Sbjct: 356 PKSRQTMLFSATMTDSVDELVRMSLDKPVRLFVD-----------PKRSTA------KGL 398
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I +F EK PL++ R + V+ FV + + AH+L R++ +
Sbjct: 399 IQEFVRVRAGREK------ERSPLLVALCTRTFKTR-VIIFVRSKKLAHQL-RIVFGL-- 448
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ E++ DL +QR +Q+FR +D ++A+D +RG+D++ ++ VINY
Sbjct: 449 -------VGLKCGELHGDLSQEQRLNALQQFRDGTVDYLMATDLASRGLDIKGVETVINY 501
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 502 DMPGQLAQYLHRVGRTARAGKKGRSVTLV 530
>gi|72160918|ref|YP_288575.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71914650|gb|AAZ54552.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 503
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 34/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT+ + L + L +P + +P TG SG +
Sbjct: 192 PDQRQTMLFSATMPSEIVALSRKYLRRPTHIRAEDDPLDTG---------------SGQV 236
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ +KL + L+ R + V C + R HH V
Sbjct: 237 TQHVFRTHPLDKLEMLARLLQ-------ARNRGLTMVFC---------QTKRECHH---V 277
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+T+ A V+ DL QR + ++ FR K+D++VA+D ARGIDV+++ V+NYE
Sbjct: 278 STELCRRGFAAAAVHGDLGQGQRERALRAFRNGKVDVLVATDVAARGIDVDDVTHVVNYE 337
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD+ K Y HRIGRT R GR GT+VT + E
Sbjct: 338 CPDDEKTYTHRIGRTGRAGRSGTAVTFIDWQE 369
>gi|89052606|ref|YP_508057.1| DEAD/DEAH box helicase [Jannaschia sp. CCS1]
gi|88862155|gb|ABD53032.1| DEAD/DEAH box helicase-like protein [Jannaschia sp. CCS1]
Length = 451
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 94/210 (44%), Gaps = 40/210 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS--GFIGK 81
Q +LFSAT+ E+L L PK V P G AD ++ F+ K
Sbjct: 199 QTMLFSATMPKQMEELASAYLSNPKKVQ--VSPPGKA----------ADKVTQVVHFMPK 246
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA+L E L N P L VL F T G +L + L
Sbjct: 247 PAKPAKLREVL-----NEDPDAL-----------VLVFGRTKHGCEKLMKGL-------- 282
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
N A ++ + QR++ I+ FR I ++VA+D ARGID+ + VINYE P
Sbjct: 283 --VADGYNAASIHGNKSQGQRDRAIKAFRDGTIKILVATDVAARGIDIPGVAYVINYELP 340
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D Y+HRIGRTAR GR+G ++ + E
Sbjct: 341 DTPDNYVHRIGRTARAGREGEAIAFCSAEE 370
>gi|407792739|ref|ZP_11139775.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
gi|407216997|gb|EKE86833.1| ATP-dependent RNA helicase, partial [Idiomarina xiamenensis 10-D-4]
Length = 393
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S+D L + + P + V PA
Sbjct: 176 PNQRQTLMFSATFSNDIRALAKGLVNDPAEIS--VAPAN--------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T + + L + KP +L Q++R+ + V+ F T GA+RL + LH +
Sbjct: 213 ---STAERIEQILYAAEKSQKPRMLMQILRELNLPQVIVFSRTKHGANRLVKQLHSDGFL 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + +F+ ++ ++VA+D ARG+D+E + VINY+
Sbjct: 270 AAAIHGNKSQGA----------RTKALADFKSGQVQVLVATDIAARGLDIEKLPYVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G+ G +++LV E
Sbjct: 320 LPQVAEDYVHRIGRTGRAGQTGHAISLVMDEE 351
>gi|443673677|ref|ZP_21138733.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
gi|443413744|emb|CCQ17071.1| putative DEAD/DEAH box helicase [Rhodococcus sp. AW25M09]
Length = 507
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 76/125 (60%), Gaps = 10/125 (8%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ ++++ + F T + A ++A D +A +G ++ V+ DL QR
Sbjct: 236 MVAKVLKADGRGATMVFTRTKRTAQKVA------DELAERG----YSVGAVHGDLGQVQR 285
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR G
Sbjct: 286 EKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGRTGI 345
Query: 223 SVTLV 227
+VTLV
Sbjct: 346 AVTLV 350
>gi|56477991|ref|YP_159580.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
gi|56314034|emb|CAI08679.1| ATP-dependent RNA helicase [Aromatoleum aromaticum EbN1]
Length = 491
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL L +P+L E N+ S I
Sbjct: 180 PAARQSLLFSATFSDEIKKLADQMLKEPQLI-----------------EVARRNMVSETI 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ ++ S LK +L L+R L FV T RLA L
Sbjct: 223 ---------THRVHPVSAGLKRNLLAHLLRHEPDTQALVFVATKLACSRLAHFLERHGIA 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ D QR ++ F+ K+ ++VA+D ARG+D++++ VIN+E
Sbjct: 274 ADA----------IHGDKGQAQRTDTLEAFKSGKLRVLVATDVAARGLDIDDLPSVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R GRQG +V+LV+ E
Sbjct: 324 LPHTAEDYVHRIGRTGRAGRQGNAVSLVSAEE 355
>gi|70732712|ref|YP_262475.1| ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
gi|68347011|gb|AAY94617.1| putative ATP-dependent RNA helicase [Pseudomonas protegens Pf-5]
Length = 444
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 36/216 (16%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
+ P + Q LLFSAT S + + QL AG P S E N++
Sbjct: 173 YAALPKKRQTLLFSATFS---DAIRQL--------------AGQMLNDPLSIEVSPRNVA 215
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
+ + ++ P + KP + L+RK+ + VL F T G
Sbjct: 216 ANTVKQWVVPVD---------KKRKPELFSHLLRKNRWKQVLVFAKTRNG---------- 256
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K G +N ++ D R + + F+ +I ++VA+D ARG+D+E++ +V
Sbjct: 257 VDALVEKLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGLDIEDLPLV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 317 VNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|53713588|ref|YP_099580.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
gi|60681868|ref|YP_212012.1| ATP-dependent RNA helicase [Bacteroides fragilis NCTC 9343]
gi|265763909|ref|ZP_06092477.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
gi|336409944|ref|ZP_08590426.1| hypothetical protein HMPREF1018_02442 [Bacteroides sp. 2_1_56FAA]
gi|375358679|ref|YP_005111451.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|383118552|ref|ZP_09939293.1| hypothetical protein BSHG_2552 [Bacteroides sp. 3_2_5]
gi|423250187|ref|ZP_17231203.1| hypothetical protein HMPREF1066_02213 [Bacteroides fragilis
CL03T00C08]
gi|423255690|ref|ZP_17236619.1| hypothetical protein HMPREF1067_03263 [Bacteroides fragilis
CL03T12C07]
gi|423257252|ref|ZP_17238175.1| hypothetical protein HMPREF1055_00452 [Bacteroides fragilis
CL07T00C01]
gi|423265778|ref|ZP_17244781.1| hypothetical protein HMPREF1056_02468 [Bacteroides fragilis
CL07T12C05]
gi|423271549|ref|ZP_17250519.1| hypothetical protein HMPREF1079_03601 [Bacteroides fragilis
CL05T00C42]
gi|423275547|ref|ZP_17254491.1| hypothetical protein HMPREF1080_03144 [Bacteroides fragilis
CL05T12C13]
gi|423284322|ref|ZP_17263206.1| hypothetical protein HMPREF1204_02744 [Bacteroides fragilis HMW
615]
gi|52216453|dbj|BAD49046.1| ATP-dependent RNA helicase [Bacteroides fragilis YCH46]
gi|60493302|emb|CAH08086.1| putative ATP-dependent RNA helicase [Bacteroides fragilis NCTC
9343]
gi|251945856|gb|EES86263.1| hypothetical protein BSHG_2552 [Bacteroides sp. 3_2_5]
gi|263256517|gb|EEZ27863.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_16]
gi|301163360|emb|CBW22910.1| putative ATP-dependent RNA helicase [Bacteroides fragilis 638R]
gi|335946325|gb|EGN08131.1| hypothetical protein HMPREF1018_02442 [Bacteroides sp. 2_1_56FAA]
gi|387778728|gb|EIK40823.1| hypothetical protein HMPREF1055_00452 [Bacteroides fragilis
CL07T00C01]
gi|392650483|gb|EIY44151.1| hypothetical protein HMPREF1067_03263 [Bacteroides fragilis
CL03T12C07]
gi|392653762|gb|EIY47414.1| hypothetical protein HMPREF1066_02213 [Bacteroides fragilis
CL03T00C08]
gi|392697245|gb|EIY90431.1| hypothetical protein HMPREF1079_03601 [Bacteroides fragilis
CL05T00C42]
gi|392701723|gb|EIY94879.1| hypothetical protein HMPREF1080_03144 [Bacteroides fragilis
CL05T12C13]
gi|392703436|gb|EIY96580.1| hypothetical protein HMPREF1056_02468 [Bacteroides fragilis
CL07T12C05]
gi|404579990|gb|EKA84702.1| hypothetical protein HMPREF1204_02744 [Bacteroides fragilis HMW
615]
Length = 418
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C N K ++ L + + V+ F ++ +A+ L +
Sbjct: 213 ---SKPAEKIVQAAYVCYENQKLGIVRSLFAEEVPERVIIFASSKIKVKEVAKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR I+ EF+ +I+++VA+D ++RGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQVQREFIMHEFKSGRINILVATDIVSRGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVNEKE 352
>gi|348590558|ref|YP_004875020.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
gi|347974462|gb|AEP36997.1| ATP-dependent RNA helicase [Taylorella asinigenitalis MCE3]
Length = 444
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 36/230 (15%)
Query: 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGD 61
R +G ++ + PSR Q LL+SAT S + L Q L P T
Sbjct: 165 RMLDMGFMLDLLKILAQLPSRRQSLLYSATFSDNIRSLAQKFLHDPVEIT---------- 214
Query: 62 TQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVN 121
++N +T + +++++ + S K L L+ V+ F N
Sbjct: 215 -------VASNN---------STASTITQEIFSVSEAEKNAALLYLLASRNFNNVIIFSN 258
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
L R L+++D A G K +R K + F+ K +++VA+D
Sbjct: 259 RKITCKNLERYLNNLDLSAQSLHGDKTQ----------SERTKALNLFKSSKCNILVATD 308
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ARG+D+ ++D VINYE P + Y+HRIGRT R GR+G ++++ ++ E
Sbjct: 309 VAARGLDISDVDAVINYELPPTSEDYVHRIGRTGRAGRKGIAISMYSSDE 358
>gi|327313656|ref|YP_004329093.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
gi|326944744|gb|AEA20629.1| putative cold-shock DEAD-box protein A [Prevotella denticola F0289]
Length = 572
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 43/215 (20%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q ++FSAT+ E+L + L P ++ +V +PA
Sbjct: 179 PASCQTIMFSATMPKKIEELAKTLLKNPVEIKLAVSKPA--------------------- 217
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHI 136
++ + C K ++ + + ++ V+ F + Q ++A L HI
Sbjct: 218 -------EKIHQMAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAASLGRKHI 270
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
N E++SDL +QRN ++ +F+ +ID++VA+D +ARGID+++I +VI
Sbjct: 271 ------------NCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVARGIDIDDIAMVI 318
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P + + Y+HRIGRTAR R G ++T V +
Sbjct: 319 NYDVPHDAEDYVHRIGRTARADRDGKAITFVNVDD 353
>gi|365539790|ref|ZP_09364965.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 465
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + +L + L + VE + T P +S A +
Sbjct: 176 PAKRQNLLFSATFSDEIRQLAK------GLVNNPVEISVT----PRNSTAKT-------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + ++K P +L QLI+++ Q L F T GA+RL L
Sbjct: 219 KQWVHPVDKAKK---------PTLLIQLIKENNWQQALVFTRTKHGANRLTAQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G+ ++ A ++ + R K + F+ +I ++VA+D ARGID++ + V+N+E
Sbjct: 265 -----GSGISAAAIHGNKSQGARTKALANFKSGEIRILVATDIAARGIDIDQLPQVVNFE 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +G +++LV E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGAEGNAISLVCADE 351
>gi|336124129|ref|YP_004566177.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
gi|335341852|gb|AEH33135.1| ATP-dependent RNA helicase [Vibrio anguillarum 775]
Length = 485
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + +L + L + VE + T P +S A +
Sbjct: 197 PAKRQNLLFSATFSDEIRQLAK------GLVNNPVEISVT----PRNSTAKT-------V 239
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + ++K P +L QLI+++ Q L F T GA+RL L
Sbjct: 240 KQWVHPVDKAKK---------PALLIQLIKENNWQQALVFTRTKHGANRLTAQLE----- 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G+ ++ A ++ + R K + F+ +I ++VA+D ARGID++ + V+N+E
Sbjct: 286 -----GSGISAAAIHGNKSQGARTKALANFKSGEIRILVATDIAARGIDIDQLPQVVNFE 340
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +G +++LV E
Sbjct: 341 LPNVPEDYVHRIGRTGRAGAEGNAISLVCADE 372
>gi|228991413|ref|ZP_04151368.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
gi|228768343|gb|EEM16951.1| ATP-dependent RNA helicase [Bacillus pseudomycoides DSM 12442]
Length = 433
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 161 GFLYDIEDILEETPESKQTMLFSATMPKDIKKLAKRYMKEPEMI------------QIQS 208
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
+E +N+ G I TT + L +P + + F T + A
Sbjct: 209 AEVTVNNIKQGIIE--TTDRTKQDALRHVMDRDQPFL------------AVIFCRTKRRA 254
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L L KG G N E++ DL +R ++++ FR KI ++A+D ARG
Sbjct: 255 SKLYDDL--------KGYG--YNCDELHGDLSQGKRERVMKSFRDAKIQYLIATDVAARG 304
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+DVE + V NY+ P++++ YIHRIGRT R G G ++T V
Sbjct: 305 LDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFV 345
>gi|350559286|ref|ZP_08928126.1| DEAD/DEAH box helicase domain protein, partial [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349781554|gb|EGZ35837.1| DEAD/DEAH box helicase domain protein [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 407
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +L G D P E A N +S +
Sbjct: 182 PATRQNLLFSATFSDEIRRLS----------------GGILDN-PAEVEVAARNTASELV 224
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + T+ K +L LIR+H VL F T GA+RLA L
Sbjct: 225 ---------QQSVHLVETHQKRELLSHLIREHRWDQVLVFTRTKHGANRLAEKL------ 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A + A ++ + R K + +F+ R+I ++VA+D ARG+D++ + V+N+E
Sbjct: 270 ----AKDGIPAAAIHGNKSQAARTKALDQFKNRRIPVLVATDIAARGLDIDQLPQVVNFE 325
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G++++LV E
Sbjct: 326 LPNVPEDYVHRIGRTGRAGSAGSALSLVDAGE 357
>gi|50305787|ref|XP_452854.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660562|sp|Q6CT85.1|RRP3_KLULA RecName: Full=ATP-dependent rRNA helicase RRP3
gi|49641987|emb|CAH01705.1| KLLA0C14608p [Kluyveromyces lactis]
Length = 487
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 247 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 280
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R++ L + ++ AT
Sbjct: 281 TLVQTLMVVPGGLKNTFLIYLLNEFIGKSTIVFTRTKANAERISNLCNLLEFSAT----- 335
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 336 -----ALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 390
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 391 YIHRVGRTARAGRSGKSISLVSQYD 415
>gi|443316249|ref|ZP_21045701.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
gi|442784157|gb|ELR94045.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 6406]
Length = 438
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 106/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q L+FSAT S++ +KL L P L E A N ++ I
Sbjct: 177 PAERQTLMFSATFSNEIKKLADDILRDPVLV-----------------EVAARNSTADKI 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + K + L+ Y +I +H Q VL F T GA+RLA L D +
Sbjct: 220 SQVVHPVDRQRK--------RELLSY-MIGQHNWQQVLVFTRTKHGANRLAEQLER-DGL 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T A ++ + R + +Q+F++ + ++VA+D ARG+D++++ V+N+E
Sbjct: 270 KT---------AAIHGNKSQGARTRALQDFKKGAVRVLVATDIAARGLDIDHLPHVVNFE 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 321 LPNVSEDYVHRIGRTGRAGNTGQAVSLVSSEE 352
>gi|412988910|emb|CCO15501.1| predicted protein [Bathycoccus prasinos]
Length = 935
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 40/215 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LFSAT+ H +KL Q L D ++ +
Sbjct: 410 PKNRQTFLFSATMPHWVKKLQQKFL--------------------------VDQVNIDLV 443
Query: 80 GKFTTPAELSEKLTTCSTNL--KPLVLYQLIRKHAM-QGVLCFVNTAQGAHRLARLLHHI 136
G+ T L +CS K VL L+ HA + F T + A +
Sbjct: 444 GEDTGKINKDIDLMSCSVAFPSKCAVLMDLVTVHAKGNKTIVFTQTKRDADEV------- 496
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
T G +++ ++ D+ QR + +Q FR+ K ++VA+D ARG+DV+N+D+V+
Sbjct: 497 ----TASLGKRVSTEVLHGDIAQAQRERTLQRFRQDKFSVLVATDVAARGLDVDNVDLVV 552
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+YE P+ + ++HR GRT R G++GT++ L T E
Sbjct: 553 HYELPNETESFVHRCGRTGRAGKKGTAIALHTDRE 587
>gi|423712183|ref|ZP_17686485.1| hypothetical protein MCQ_00945 [Bartonella washoensis Sb944nv]
gi|395412400|gb|EJF78904.1| hypothetical protein MCQ_00945 [Bartonella washoensis Sb944nv]
Length = 470
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 36/203 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LFSAT+S + L + L P + P GT
Sbjct: 197 QTALFSATMSKEVSALAKFLLNDPVRIE--IAPQGT------------------------ 230
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T AE+++KL T K VL QL+ A V+ F T GA + R L I
Sbjct: 231 TVAEITQKLYCVPTCEKKNVLAQLLTNPAFISVIVFTRTKHGADAVTRSLAKIG------ 284
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++A ++ + R ++ FR R + ++VA+D ARGIDV I VINY+ PD
Sbjct: 285 ----YSVATIHGNKSHSARQYALKAFRERSVRILVATDIAARGIDVSGISHVINYDLPDE 340
Query: 204 IKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 341 AESYVHRIGRTGRNGASGNALTL 363
>gi|317490115|ref|ZP_07948604.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
gi|316910820|gb|EFV32440.1| DEAD/DEAH box helicase [Eggerthella sp. 1_3_56FAA]
Length = 509
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT+ H +K L P +VVE A G+T T +
Sbjct: 176 PADRQTLLFSATIDHSIQKNLGSLLNDP----AVVEIARNGETAQT-------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F P + KP +L L+ + V+ F AR + ++
Sbjct: 219 EQFMMP---------IANFKKPELLQALLEEKGSDRVIVF----------ARTKNRTEDC 259
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++SD QR + + FRR + ++VA+D LARGIDV ++D VIN++
Sbjct: 260 AEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD + Y+HRIGRT R G QG +V+ VT
Sbjct: 320 LPDMPEDYVHRIGRTGRAGEQGFAVSFVT 348
>gi|170691820|ref|ZP_02882984.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
gi|170143104|gb|EDT11268.1| DEAD/DEAH box helicase domain protein [Burkholderia graminis C4D1M]
Length = 493
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRDPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ +++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQIVYEVAEGDKTGAVVQLIRERSLKQVIVFCNSKIGASRLARSLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRTQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|377820266|ref|YP_004976637.1| DEAD/DEAH box helicase [Burkholderia sp. YI23]
gi|357935101|gb|AET88660.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. YI23]
Length = 496
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N ++ +
Sbjct: 196 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSNSTATNV 238
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ S+K + QLIR+ ++ V+ F N+ GA RLAR+L V
Sbjct: 239 RQIVFEVHESDKSGAVA---------QLIRERELKQVIVFCNSKIGASRLARVLEKDGIV 289
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 290 ATA----------IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 340 LPFNAEDYVHRIGRTGRAGASGDALSLCSANE 371
>gi|406987957|gb|EKE08126.1| ATP-dependent RNA helicase hydrolase, partial [uncultured
bacterium]
Length = 255
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L FSAT S + E+L + L QPK + + N S +
Sbjct: 16 PKKRQTLFFSATFSRNIEQLAEDLLHQPK-----------------TVQIAQKNAVSDQV 58
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + S K P ++ LI H + VL F T A+RL LL+ D
Sbjct: 59 KQVVYPVDRSRK---------PELMCHLITAHGWKQVLVFTRTRWSANRLCDLLNQRDIQ 109
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ G K A R+K + F++ + ++VA+D ARG+D++ + V+NYE
Sbjct: 110 SDVIHGDKSQAA----------RSKALMHFKQGRTRILVATDVAARGLDIQQLPHVVNYE 159
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P Y+HRIGRT R G QG + +LV E
Sbjct: 160 LPTVASDYVHRIGRTGRAGNQGEAASLVCVDE 191
>gi|403215528|emb|CCK70027.1| hypothetical protein KNAG_0D02780 [Kazachstania naganishii CBS
8797]
Length = 476
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL + LF +VV P + + AD L G++
Sbjct: 190 QSMLFSATQTTKVEDLARISLRKGPLFINVV---------PETDHSTADGLEQGYV---- 236
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + V+ F+++ A LL++ID
Sbjct: 237 ----------VCESDKRFLLLFSFLKRNQKKKVIVFLSSCNSVKYYAELLNYID------ 280
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + ++V +D ARG+D+ +D ++ ++ PD+
Sbjct: 281 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIVQFDPPDD 336
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ + +E
Sbjct: 337 PRDYIHRVGRTARGTKGKGKSLMFLIPNE 365
>gi|375149900|ref|YP_005012341.1| DEAD/DEAH box helicase [Niastella koreensis GR20-10]
gi|361063946|gb|AEW02938.1| DEAD/DEAH box helicase domain protein [Niastella koreensis GR20-10]
Length = 405
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 103/214 (48%), Gaps = 37/214 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T P++ Q L+FSAT+ P+K+ QL+ K+ T+ E ++P
Sbjct: 175 TLPTQRQTLMFSATM---PDKIRQLAR---KILTNPAE-INIAISKP------------- 214
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
P ++ +K K +L ++ + L F + Q L R +
Sbjct: 215 -------PEKIVQKAFVVYEPQKLPLLKHILTNVPFKSALIFCSRKQSVKLLVRDMER-- 265
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
K IAE++SDL+ QR ++ F +I ++ A+D L+RGID++ ID+VIN
Sbjct: 266 --------AKFKIAEIHSDLEQSQRENVLNGFTSGRIPILCATDILSRGIDIDTIDLVIN 317
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ P + + Y+HRIGRTAR G + TLV+ E
Sbjct: 318 YDVPRDAEDYVHRIGRTARAEADGMAFTLVSEAE 351
>gi|302309551|ref|NP_986999.2| AGR333Cp [Ashbya gossypii ATCC 10895]
gi|442570164|sp|Q74Z73.2|HAS1_ASHGO RecName: Full=ATP-dependent RNA helicase HAS1
gi|299788412|gb|AAS54823.2| AGR333Cp [Ashbya gossypii ATCC 10895]
gi|374110250|gb|AEY99155.1| FAGR333Cp [Ashbya gossypii FDAG1]
Length = 504
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +V D++ +S A D L G++
Sbjct: 220 QSMLFSATQTTKVEDLARISLRPGPLFINV-------DSEKETSTA--DGLEQGYV---- 266
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++K + ++ F+++ A LL++ID
Sbjct: 267 ----------VCDSDKRFLLLFTFLKKFQNKKIIVFLSSCNSVKYYAELLNYID------ 310
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + ++V +D ARG+D+ +D +I ++ PD+
Sbjct: 311 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 366
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T HE
Sbjct: 367 PRDYIHRVGRTARGTKGKGKSLMFLTPHE 395
>gi|257792189|ref|YP_003182795.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257476086|gb|ACV56406.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 508
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 98/209 (46%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT+ H +K L P +VVE A G+T T +
Sbjct: 176 PADRQTLLFSATIDHSIQKNLGSLLNDP----AVVEIARNGETAQT-------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F P + KP +L L+ + V+ F AR + ++
Sbjct: 219 EQFMMP---------IANFKKPELLQALLEEKGSDRVIVF----------ARTKNRTEDC 259
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++SD QR + + FRR + ++VA+D LARGIDV ++D VIN++
Sbjct: 260 AEALCDAGYRAESIHSDKSQGQRKRALDNFRRGRTSILVATDVLARGIDVPDVDHVINFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD + Y+HRIGRT R G QG +V+ VT
Sbjct: 320 LPDMPEDYVHRIGRTGRAGEQGFAVSFVT 348
>gi|240850851|ref|YP_002972251.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
gi|240267974|gb|ACS51562.1| ATP-dependent RNA helicase [Bartonella grahamii as4aup]
Length = 460
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT E+ +KL TN K VL +L+ A V+ F T GA + R L I
Sbjct: 220 TTAVEICQKLYCVPTNEKKNVLSKLLTNPAFNSVIVFTRTKHGADSVTRSLAKIG----- 274
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
++A ++ + R ++ FR R + ++VA+D ARGID+ I VINY+ PD
Sbjct: 275 -----YSVATIHGNKSQGARQSALKAFRERSVQILVATDIAARGIDIPGISHVINYDLPD 329
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 330 EAESYVHRIGRTGRNGASGEALTL 353
>gi|392571512|gb|EIW64684.1| DEAD-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 772
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 109/211 (51%), Gaps = 35/211 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+ P+ Q +LFSAT++ ++L ++SL +P +LF P S A
Sbjct: 358 SCPTSRQTMLFSATMTDSVDELVRMSLNKPVRLFVD-----------PKRSTA------R 400
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
G + +F ++ + +L L ++ + F + + AH++ R++ +
Sbjct: 401 GLLQEFV-------RVRAGKETERSALLVALCKRSFKARAIIFYRSKKLAHQM-RIMFSL 452
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M E++ DL +QR K +Q+FR +D ++A+D +RG+D++ I+ VI
Sbjct: 453 ---------LGMKCDELHGDLTQEQRLKALQQFRDGHVDYLMATDLASRGLDIKGIETVI 503
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + +Y+HR+GRTAR G++G SVTLV
Sbjct: 504 NYDMPGTLSQYLHRVGRTARAGKKGRSVTLV 534
>gi|356554249|ref|XP_003545461.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
1-like [Glycine max]
Length = 492
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 85/159 (53%), Gaps = 10/159 (6%)
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
LS+G + + P L C +KPL L L++ + + F + H L +LL
Sbjct: 283 LSAGKMC-YRLPEYLECYKLICERKVKPLYLVALLKSLGEEKCIVFTRFVESTHHLCKLL 341
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
+ ++ K+ I E +S LK Q R+K + EF+RR+ ++V+SD + R +DVE +
Sbjct: 342 NFFGDL-------KIGIKE-FSGLKHQQVRSKTVGEFQRREFQVLVSSDAMTRVMDVEGL 393
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P K Y+HR GRTAR G+ G TL++ E
Sbjct: 394 RNVINYDVPKYTKTYVHRPGRTARAGQTGCCFTLMSKDE 432
>gi|385791189|ref|YP_005822312.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|302327262|gb|ADL26463.1| ATP-dependent RNA helicase DeaD [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 739
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ QR LFSAT+ +K+ L G+ + E
Sbjct: 233 PADAQRALFSATMPDSVKKIIDQHL---------------GEYEEARIE----------- 266
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK TT + ++ K L +++ GVL FV T Q +A L
Sbjct: 267 GKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFVRTKQNTTEVAEKLE----- 321
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++G N+A + DL R + I + K+D+VVA+D ARGIDV+ I +V+NY+
Sbjct: 322 -SRG----FNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGIDVDRISLVVNYD 376
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R GR G ++ +T E
Sbjct: 377 IPYDTESYVHRIGRTGRAGRSGNAILFITPRE 408
>gi|307153172|ref|YP_003888556.1| DEAD/DEAH box helicase [Cyanothece sp. PCC 7822]
gi|306983400|gb|ADN15281.1| DEAD/DEAH box helicase domain protein [Cyanothece sp. PCC 7822]
Length = 482
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 18/118 (15%)
Query: 114 QGVLCFVNTAQGAHRLARLL----HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169
+ + FV T Q A L L HH+D E + +L QR +++Q F
Sbjct: 243 ESAIIFVRTKQTATELTGKLQESGHHVD--------------EYHGNLSQAQRERLVQRF 288
Query: 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
R KI LVVA+D ARG+DVE++ VIN++ PDN + YIHRIGRT R G+ GT+++L+
Sbjct: 289 REGKIKLVVATDIAARGLDVEDLSHVINFDLPDNTETYIHRIGRTGRAGKTGTAISLI 346
>gi|329962827|ref|ZP_08300712.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
gi|328529384|gb|EGF56297.1| DEAD/DEAH box helicase [Bacteroides fluxus YIT 12057]
Length = 428
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 45/216 (20%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLS---LFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLS 75
P Q ++FSAT+ P K+ QL+ L P ++ +V +PA
Sbjct: 178 PKERQTIMFSATM---PAKIQQLANNILNNPAEVKLAVSKPAD----------------- 217
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
++ + C N K ++ L + + V+ F ++ + + L
Sbjct: 218 -----------KIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKIKVKEVTKALKQ 266
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +V
Sbjct: 267 M----------KLNVGEMHSDLEQAQREEVMYEFKAGRINILVATDIVARGIDIDDIRLV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P + + Y+HRIGRTAR G ++T ++ E
Sbjct: 317 INYDVPHDSEDYVHRIGRTARANNDGVALTFISEKE 352
>gi|268529640|ref|XP_002629946.1| Hypothetical protein CBG03667 [Caenorhabditis briggsae]
Length = 565
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 38/220 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F + P + Q LL SAT++ + LH++S +P F E G D
Sbjct: 261 FQSIPEKRQTLLLSATITQNINTLHKVSTRKPYFF----EDKGKDDE------------- 303
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLAR 131
TT L +K C +K L +++ K+ V+ F T + LA
Sbjct: 304 -------TTVDRLEQKFVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAY 356
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+ G + ++S + QR + FR + + +++ +D +RG+D+ +
Sbjct: 357 MFE----------GLGFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPH 406
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+V+N+ P K YIHR+GR+AR GR G++++ VT ++
Sbjct: 407 VDLVVNHNVPQCPKTYIHRVGRSARAGRFGSALSFVTQYD 446
>gi|406989712|gb|EKE09457.1| hypothetical protein ACD_16C00166G0004 [uncultured bacterium]
Length = 407
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 90/148 (60%), Gaps = 17/148 (11%)
Query: 88 LSEKLTTC--STNLK-PLVLYQL-IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
L K TC S+N K P +L +L IRK + +L FV T GA RLA+ L+
Sbjct: 211 LKIKQETCRASSNEKFPFLLKELEIRKGS---ILVFVKTKHGADRLAKKLNQ-------- 259
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K++++ ++ +LK +R+ +I +FR+ K ++VA+D ARG+D+ +I VINY+ P +
Sbjct: 260 --QKLSVSAIHGNLKQRKRDAVINDFRKLKTRIMVATDVAARGLDIPHIMHVINYDLPQS 317
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGRT R G +G +++ ++ E
Sbjct: 318 PEDYIHRIGRTGRAGMEGFALSFISPDE 345
>gi|312796956|ref|YP_004029878.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
gi|312168731|emb|CBW75734.1| ATP-dependent RNA helicase [Burkholderia rhizoxinica HKI 454]
Length = 508
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT S + +KL A T P + E N
Sbjct: 221 PSQRQTLLFSATFSAEIKKL-----------------ASTYLRDPVTIEVARSN------ 257
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T + + + + + K + QLIR+ ++ V+ F N+ GA RLA+ L V
Sbjct: 258 ---STASNVRQIVFEVAEPDKQAAVVQLIRQRELKQVIVFCNSKIGASRLAKQLERDGVV 314
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 315 ATA----------IHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 364
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 365 LPFNAEDYVHRIGRTGRAGASGDALSLFSGNE 396
>gi|261416325|ref|YP_003250008.1| DEAD/DEAH box helicase [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261372781|gb|ACX75526.1| DEAD/DEAH box helicase domain protein [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 802
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ QR LFSAT+ +K+ L G+ + E
Sbjct: 296 PADAQRALFSATMPDSVKKIIDQHL---------------GEYEEARIE----------- 329
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK TT + ++ K L +++ GVL FV T Q +A L
Sbjct: 330 GKTTTVENICQRYLLVKNEHKIEALARVLEGEEFDGVLIFVRTKQNTTEVAEKLE----- 384
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++G N+A + DL R + I + K+D+VVA+D ARGIDV+ I +V+NY+
Sbjct: 385 -SRG----FNVAPLNGDLAQSMRERTINRLKMGKLDIVVATDVAARGIDVDRISLVVNYD 439
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R GR G ++ +T E
Sbjct: 440 IPYDTESYVHRIGRTGRAGRSGNAILFITPRE 471
>gi|431794108|ref|YP_007221013.1| DNA/RNA helicase [Desulfitobacterium dichloroeliminans LMG P-21439]
gi|430784334|gb|AGA69617.1| DNA/RNA helicase, superfamily II [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 531
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q +LFSAT+ + +KL Q + QPK S D L+ I
Sbjct: 179 PEERQMMLFSATMPIEIKKLAQNYMHQPK-----------------SVAVSRDELTVPLI 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ E EK+ + L ++I + + F T +G L L
Sbjct: 222 EQVFY--ETREKIKVDA-------LCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYF 272
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ DL QR++++++FR K++L+VA+D ARG+D++N+ VIN++
Sbjct: 273 ADA----------LHGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFD 322
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R GR+G ++TLV++ E
Sbjct: 323 IPQDPESYVHRIGRTGRAGRKGQAITLVSSRE 354
>gi|126179703|ref|YP_001047668.1| DEAD/DEAH box helicase domain-containing protein [Methanoculleus
marisnigri JR1]
gi|125862497|gb|ABN57686.1| DEAD/DEAH box helicase domain protein [Methanoculleus marisnigri
JR1]
Length = 527
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 10/129 (7%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
+L +L+ + L F NT +G +D++ T ++ D+K R
Sbjct: 234 ILTRLLDMYDPDLTLIFSNTKRG----------VDDLTTHLQARGYFAEGLHGDMKQTLR 283
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
++++ +FR ID++VA+D ARGIDVE++D+VINY+ P +I+ YIHRIGRTAR GR G
Sbjct: 284 DRVMAKFRAGSIDILVATDVAARGIDVEDVDLVINYDVPQDIEYYIHRIGRTARAGRTGR 343
Query: 223 SVTLVTTHE 231
+VT V E
Sbjct: 344 AVTFVGPKE 352
>gi|444318027|ref|XP_004179671.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
gi|387512712|emb|CCH60152.1| hypothetical protein TBLA_0C03500 [Tetrapisispora blattae CBS 6284]
Length = 506
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 266 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 299
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L LI + + ++ F T A RL+ L + ++
Sbjct: 300 TLIQTLMVVPGGLKNTYLIYLINEFVGKSIIIFTRTKANAERLSLLSNTLE--------- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
+ ++ DL +QR + F+ K +++A+D ARG+D+ ++D+VINY+ P + K
Sbjct: 351 -FDAIALHGDLNQNQRTGALDLFKAGKKSILIATDVAARGLDIPSVDIVINYDIPVDSKS 409
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 410 YIHRVGRTARAGRSGKSISLVSQYD 434
>gi|254578822|ref|XP_002495397.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
gi|238938287|emb|CAR26464.1| ZYRO0B10318p [Zygosaccharomyces rouxii]
Length = 750
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q +LFSAT++ ++L LSL +P + +P + L F+
Sbjct: 413 PSKRQTMLFSATMNSKIKQLVSLSLKRP--VRVMTDPP----------QQAVSKLQQEFV 460
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+LKP L+ LI+K A + ++ FV+ + HRL +L +
Sbjct: 461 ------------RIRKRDHLKPSTLFYLIKKLDGAAQKRMVVFVSKKEMVHRLRIILGLL 508
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M +AE++ L +QR + I +F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 509 G----------MAVAELHGSLNQEQRLQSINKFKSLEVPVLICTDLASRGLDIPKIEVVI 558
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HR+GRTAR GR+G SV+ V
Sbjct: 559 NYDMPKSFEIYLHRVGRTARAGREGRSVSFV 589
>gi|373500494|ref|ZP_09590875.1| hypothetical protein HMPREF9140_00993 [Prevotella micans F0438]
gi|371953428|gb|EHO71253.1| hypothetical protein HMPREF9140_00993 [Prevotella micans F0438]
Length = 531
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 89/150 (59%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + ++ C K ++ + + ++ V+ F + Q ++A+ L+
Sbjct: 214 SKPAEKIRQQAYVCHETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAQSLNQ------ 267
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
++N +++SDL+ +R++++ F+ +ID++VA+D LARGID+++I +VINY+ P
Sbjct: 268 ----KQINCGQMHSDLEQAERDEMMFRFKSGQIDVLVATDILARGIDIDDIAMVINYDGP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR R G ++T V +
Sbjct: 324 HDAEDYVHRIGRTARADRDGVAITFVNDDD 353
>gi|223984537|ref|ZP_03634669.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
gi|223963523|gb|EEF67903.1| hypothetical protein HOLDEFILI_01964 [Holdemania filiformis DSM
12042]
Length = 556
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
C K +L QLI + F NT + L ++ +KG A ++
Sbjct: 223 CPKEAKKEILMQLISMQNPHLAMIFCNTKKMVDELT------SDLVSKGYPA----AALH 272
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
D+K + R ++ F++ KI+++VA+D ARGIDV+++DVV NY+ P + Y+HRIGRT
Sbjct: 273 GDMKQEMRTGVMDNFKKGKINILVATDVAARGIDVDSMDVVFNYDLPQESEYYVHRIGRT 332
Query: 215 ARGGRQGTSVTLVTTHE 231
R G++G +VTL+T +
Sbjct: 333 GRAGKEGLAVTLITARQ 349
>gi|307721103|ref|YP_003892243.1| DEAD/DEAH box helicase [Sulfurimonas autotrophica DSM 16294]
gi|306979196|gb|ADN09231.1| DEAD/DEAH box helicase domain protein [Sulfurimonas autotrophica
DSM 16294]
Length = 415
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 11/129 (8%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
+L L+++H + VL F+ + DN+A K + A +DL+ D R
Sbjct: 235 LLRHLLKEHKYKRVLVFMANKRAT----------DNIAEKFRKYGIEAASFNADLEQDIR 284
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
N +Q F+ KI+++ A+D ARG+D++NID +INY+ P + YIHRIGRTAR G+ G
Sbjct: 285 NDTLQAFKEAKINVLFATDIAARGLDIDNIDCIINYDLPRSPADYIHRIGRTARAGKSGE 344
Query: 223 SVTLVTTHE 231
+++ + HE
Sbjct: 345 AISFI-NHE 352
>gi|239918236|ref|YP_002957794.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
gi|239839443|gb|ACS31240.1| DNA/RNA helicase, superfamily II [Micrococcus luteus NCTC 2665]
Length = 731
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT A + ++ K + +++ +GV+ FV T G LA+ L
Sbjct: 287 TTSATIRQRYLQVGHQYKLEAMTRILETEDHEGVIAFVRTRAGTEELAQKLTR------- 339
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG K + D+ QR K +++ + ++D++VA+D ARG+DVE I VINY+ P
Sbjct: 340 -AGFKA--VAISGDIAQKQREKTVEDLKTGRVDILVATDVAARGLDVERISHVINYDIPQ 396
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRT R GRQG +V +T E
Sbjct: 397 DAESYVHRIGRTGRAGRQGDAVLFMTPRE 425
>gi|308484167|ref|XP_003104284.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
gi|308258253|gb|EFP02206.1| hypothetical protein CRE_25008 [Caenorhabditis remanei]
Length = 572
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 38/220 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F P++ Q LL SAT++++ LH++S +P F + + +E+ D L
Sbjct: 211 FEAIPAKRQTLLLSATITNNINMLHKVSTRKPYFF----------EDKSKDAESTVDRLE 260
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLAR 131
F+ C +K L +++ K+ V+ F T + LA
Sbjct: 261 QKFV--------------VCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAY 306
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+ G + ++S + QR + FR + +++++ +D +RG+D+ +
Sbjct: 307 MFE----------GLGFRVGSLHSQIPQKQRLAALSAFRSKTLNVIICTDVASRGLDIPH 356
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+V+N+ P K YIHR+GR+AR GR G++++ VT ++
Sbjct: 357 VDLVVNHNVPQCAKTYIHRVGRSARAGRFGSALSFVTQYD 396
>gi|152994240|ref|YP_001339075.1| DEAD/DEAH box helicase [Marinomonas sp. MWYL1]
gi|150835164|gb|ABR69140.1| DEAD/DEAH box helicase domain protein [Marinomonas sp. MWYL1]
Length = 418
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L FSAT + + L + L P+L E + N
Sbjct: 177 PKSRQTLFFSATFNDEIFALSKTLLKDPQLI-----------------EVNSRN------ 213
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT ++ + + + K +L LI Q VL F T QGA LA+ + D +
Sbjct: 214 ---TTATQVEQTIYAVDQDRKSALLSFLIGSKNWQQVLIFTRTKQGADELAKEMEK-DGI 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ ++ D R++++ +F+ K+ +VA+D ARGID+E + V+N+E
Sbjct: 270 ATQS---------IHGDKSQGARDRVLADFKAGKVRALVATDVAARGIDIEQLQYVVNHE 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + YIHRIGRT R G G +++LV+ E
Sbjct: 321 LPYNAEDYIHRIGRTGRAGSTGLAISLVSEKE 352
>gi|187923247|ref|YP_001894889.1| DEAD/DEAH box helicase [Burkholderia phytofirmans PsJN]
gi|187714441|gb|ACD15665.1| DEAD/DEAH box helicase domain protein [Burkholderia phytofirmans
PsJN]
Length = 489
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRTQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|375093701|ref|ZP_09739966.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374654434|gb|EHR49267.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 635
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP ++ ++++ + F T + A ++A D++A +G A V+ DL
Sbjct: 342 KPELVAKVLQADGRGLTMIFTRTKRTAQKVA------DDLAERG----FAAAAVHGDLGQ 391
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + ++ FR KID++VA+D ARGIDV+++ VINY+ PD+ K Y+HRIGRT R G+
Sbjct: 392 GAREQALRAFRSGKIDVLVATDVAARGIDVDDVTHVINYQTPDDEKTYVHRIGRTGRAGK 451
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 452 TGVAITLVDWDE 463
>gi|339444298|ref|YP_004710302.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
gi|338904050|dbj|BAK43901.1| hypothetical protein EGYY_07040 [Eggerthella sp. YY7918]
Length = 510
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+ H +K L P ++VE A G+T T +
Sbjct: 176 PECRQTLLFSATIDHSIQKNLGSLLTNP----AIVEIARNGETAET-------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + KP +L+ ++ + + V+ F T A L
Sbjct: 219 AQYVMP---------IANRKKPELLHAVLDEKGAERVIVFARTKNRTEECADELRR---- 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ ++SD QR + + FRR K ++VA+D LARGIDV +++ VIN++
Sbjct: 266 ------SGYSVESIHSDKSQGQRKRALDNFRRGKTSILVATDVLARGIDVPDVNHVINFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230
PD + Y+HRIGRT R G +G +++ VT+
Sbjct: 320 LPDMPEDYVHRIGRTGRAGEEGFAISFVTSE 350
>gi|302345341|ref|YP_003813694.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
melaninogenica ATCC 25845]
gi|302149991|gb|ADK96253.1| ATP-dependent RNA helicase DeaD family protein [Prevotella
melaninogenica ATCC 25845]
Length = 573
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ + + ++ V+ F + Q ++A L+ +
Sbjct: 214 SKPAEKIQQTAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRM----- 268
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+N E++SDL +QRN ++ +F+ +ID++VA+D ++RGID+++I +VINY+ P
Sbjct: 269 -----HINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDIAMVINYDVP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR R G ++T V +
Sbjct: 324 HDAEDYVHRIGRTARADRDGKAITFVNEDD 353
>gi|410692807|ref|YP_003623428.1| RNA helicase [Thiomonas sp. 3As]
gi|294339231|emb|CAZ87585.1| RNA helicase [Thiomonas sp. 3As]
Length = 488
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LLFSAT S + ++L Q S Q L V P T
Sbjct: 194 PKQRTTLLFSATFSTEIKRLAQ-SYLQNPLLVEVARPNATA------------------- 233
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ +++ + K L QL+R + + V+ FVN+ GA RL RLL
Sbjct: 234 ------TNVEQRVYQVEEDDKRATLVQLLRDNPLPQVIVFVNSRLGAGRLTRLLER---- 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ D +R ++ F+R +I +VA+D ARG+D+ + V+NY+
Sbjct: 284 ------DGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGLDIAELPGVVNYD 337
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R G G ++TL T +
Sbjct: 338 VPFSAEDYVHRIGRTGRAGASGLAITLATARD 369
>gi|451936623|ref|YP_007460477.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
gi|451777546|gb|AGF48521.1| ATP-dependent RNA helicase RhlE [Candidatus Kinetoplastibacterium
oncopeltii TCC290E]
Length = 447
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S E + +L L T + +P T P S AD
Sbjct: 193 PKNRQSLLFSATFS---EGIRKLGL------TYLKDPVEADVTVPNSI---AD------- 233
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T ++S K+ N K + LIR M+ + F NT GA++LA L
Sbjct: 234 ----TVQQISYKIFN---NDKYAAMLFLIRSAGMKHAIVFTNTKIGANKLASYL------ 280
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ K+N ++ D +R +I+ +F+ ++D++VA+D +ARG+D+ I VIN++
Sbjct: 281 ----SLNKVNTDCIHGDKTQKERIRILNDFKLGELDILVATDVVARGLDIVGISCVINFD 336
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R ++G++++L E
Sbjct: 337 IPHNAEDYVHRIGRTGRANKEGSAISLYYQEE 368
>gi|401839179|gb|EJT42502.1| HAS1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 505
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 105/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV---- 269
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 270 ----------VCDSDDRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID------ 313
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 314 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 369
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG +G S+ +T +E
Sbjct: 370 PRDYIHRVGRTARGTEGKGKSLMFLTPNE 398
>gi|296135178|ref|YP_003642420.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295795300|gb|ADG30090.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 488
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LLFSAT S + ++L Q S Q L V P T
Sbjct: 194 PKQRTTLLFSATFSTEIKRLAQ-SYLQNPLLVEVARPNATA------------------- 233
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ +++ + K L QL+R + + V+ FVN+ GA RL RLL
Sbjct: 234 ------TNVEQRVYQVEEDDKRATLVQLLRDNPLPQVIVFVNSRLGAGRLTRLLER---- 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ D +R ++ F+R +I +VA+D ARG+D+ + V+NY+
Sbjct: 284 ------DGIKAAAMHGDKSQAERLTTLEAFKRGEIQALVATDVAARGLDIAELPGVVNYD 337
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R G G ++TL T +
Sbjct: 338 VPFSAEDYVHRIGRTGRAGASGLAITLATARD 369
>gi|329906289|ref|ZP_08274385.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
gi|327547309|gb|EGF32148.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480]
Length = 504
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 35/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL L P + E N ++ +
Sbjct: 195 PKKRQNLMFSATFSGEIKKLASSFL-----------------DNPVTIEVARSNQTADRV 237
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + S + K ++ LIR ++ VL F NT GA RLAR L
Sbjct: 238 TQVVYKVD--------SDDAKRDIVAHLIRGRQLKQVLVFSNTKIGASRLARELE----- 284
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG + + ++ D +R ++ F+ +ID++VA+D ARG+D+ ++ VINY+
Sbjct: 285 --KGG---VKASAIHGDKTQSERMAALEAFKGGEIDVLVATDVAARGLDISDLPCVINYD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L TT +
Sbjct: 340 LPYNAEDYVHRIGRTGRAGASGDAISLFTTKD 371
>gi|269104578|ref|ZP_06157274.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268161218|gb|EEZ39715.1| ATP-dependent RNA helicase [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 409
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LFSATL E L Q LF+P + Q T+S
Sbjct: 171 PAKRQTALFSATLPEQLESLTQEVLFKPVRI----------EAQKTNSVVDT-------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+SE+L + KP L L++++ Q L F+ A L + L
Sbjct: 213 --------ISEQLYLVNKGSKPQALIALLKQYPTQQTLVFIGARDNADALCKRLMK---- 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG + A ++ + +R +I+ +F+ +K+++V+A+D LARGI +E + +VIN++
Sbjct: 261 ----AGVQA--AALHGHKEQTEREQILADFKAKKLNVVIATDVLARGIHIEQLPLVINFD 314
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P N Y+HR+GRT R G G +++LV
Sbjct: 315 LPSNAATYVHRVGRTGRAGNNGLALSLV 342
>gi|150863803|ref|XP_001382401.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
gi|158514819|sp|A3LNR6.2|HAS1_PICST RecName: Full=ATP-dependent RNA helicase HAS1
gi|149385059|gb|ABN64372.2| RNA-dependent helicase [Scheffersomyces stipitis CBS 6054]
Length = 567
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 104/209 (49%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL L+ +VV P ++ + AD L G++
Sbjct: 284 QSMLFSATQTTKVEDLARISLRPGPLYINVV---------PETAASTADGLEQGYV---- 330
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++K++ + ++ F+++ LL++ID
Sbjct: 331 ----------VCDSDKRFLLLFSFLKKYSKKKIIVFLSSCNSVKYFGELLNYID------ 374
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + +++ K +R EF K +V +D ARG+D+ +D +I ++ PD+
Sbjct: 375 ----LPVLDLHGKQKQQKRTNTFFEFCNAKQGTLVCTDVAARGLDIPAVDWIIQFDPPDD 430
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG +G S+ +T E
Sbjct: 431 PRDYIHRVGRTARGSNGKGKSLMFLTPSE 459
>gi|373453962|ref|ZP_09545842.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
gi|371936225|gb|EHO63954.1| hypothetical protein HMPREF9453_00011 [Dialister succinatiphilus
YIT 11850]
Length = 424
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT+ + +L + + P F V E + E
Sbjct: 173 PKKRQLLLFSATMPDEAVRLARKYMKHPA-FIDVSEKTAASTVEQRVYE----------- 220
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + L T + P + + F NT + AH +A L
Sbjct: 221 ---TTKPRKFKLLVRHLTEMNPYM------------AVVFCNTREEAHEIAGKLQE---- 261
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T + E++ D+ QRN++I+EF + K ++VASD ARG+DVE I V NY+
Sbjct: 262 -----ETDFVVDEIHGDMSQGQRNQVIREFEKAKTQILVASDIAARGLDVEGITHVFNYD 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N++ Y+HRIGRT R G +G ++T T +
Sbjct: 317 IPRNLEYYVHRIGRTGRAGTKGIAITYATPED 348
>gi|288803318|ref|ZP_06408751.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
gi|288334138|gb|EFC72580.1| ATP-dependent RNA helicase DeaD [Prevotella melaninogenica D18]
Length = 553
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ + + ++ V+ F + Q ++A L+ +
Sbjct: 196 SKPAEKIQQTAYVCYETQKMGIIKDIFKAGDLKRVIIFSGSKQKVKQIAGSLNRM----- 250
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+N E++SDL +QRN ++ +F+ +ID++VA+D ++RGID+++I +VINY+ P
Sbjct: 251 -----HINCGEMHSDLDQEQRNDVMFKFKSGQIDVLVATDIVSRGIDIDDIAMVINYDVP 305
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRTAR R G ++T V +
Sbjct: 306 HDAEDYVHRIGRTARADRDGKAITFVNEDD 335
>gi|126664124|ref|ZP_01735117.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
gi|126623838|gb|EAZ94533.1| possible ATP-dependent RNA helicase [Flavobacteria bacterium BAL38]
Length = 419
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+ +L L +PK + SV P SS
Sbjct: 178 PDNRQTLLFSATMPIAIRELADTFLTRPK-YISVT---------PISS------------ 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +S+K+ + + K L+L QLI + ++ L F T GA + ++L
Sbjct: 216 ----TAENVSQKVYFVNKDDKRLLLKQLIIEESLSNALVFTRTKHGADNIVKVL------ 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K A K ++ D + R +++++F+ ++ID++VA+D ARGID+E + VIN++
Sbjct: 266 --KKAHIKAE--AIHGDKSQNARQRVLEQFKNKEIDILVATDIAARGIDIEQLPFVINFD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++ E
Sbjct: 322 IPNISETYVHRIGRTGRAGNSGLAISFCGKDE 353
>gi|294944705|ref|XP_002784389.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
gi|239897423|gb|EER16185.1| ATP-dependent RNA helicase DRS1, putative [Perkinsus marinus ATCC
50983]
Length = 720
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 100/208 (48%), Gaps = 34/208 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q ++FSAT++ + KL ++ L +P +E PT L+ FI +
Sbjct: 328 QTMMFSATMNQEVLKLAKVVLSKP----VTIETTKANRVSPT--------LTQEFIRVTS 375
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
+ L C+ KH + L F + AHR+A LL G
Sbjct: 376 EQQREATLLAACT-------------KHFTKRCLIFCAQKKTAHRMAVLL---------G 413
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K+ AE++ +L QR K + +F K ++ +D ARG+D+ +++ VIN+E P +
Sbjct: 414 LVGKVKFAELHGNLSQQQRVKALADFESGKATHLICTDLAARGLDLPHVETVINFELPPD 473
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ KY+HR+GRTAR G GTSVT+ T E
Sbjct: 474 VTKYVHRVGRTARAGASGTSVTMYTPGE 501
>gi|307566011|ref|ZP_07628469.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
21A-A]
gi|307345199|gb|EFN90578.1| putative ATP-dependent RNA helicase RhlE [Prevotella amnii CRIS
21A-A]
Length = 567
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 89/152 (58%), Gaps = 15/152 (9%)
Query: 83 TTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ PAE + + C K ++ ++ + ++ V+ F + Q ++ L+
Sbjct: 214 SKPAEKIQQSAYICYETQKIGIIKEIFKSGNLKRVIIFSGSKQKVKKITASLN------- 266
Query: 142 KGAGTKMNI--AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K NI E++SDL QR+ ++ +F+ +ID++VA+D +ARGID+++I +VINY+
Sbjct: 267 -----KQNIKCGEMHSDLDQAQRDDVMFKFKSSQIDVLVATDIVARGIDIDDIAMVINYD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++ Y+HRIGRTAR R+G ++T V+ +
Sbjct: 322 VPHDVEDYVHRIGRTARADREGNAITFVSEED 353
>gi|241959442|ref|XP_002422440.1| ATP-dependent rRNA helicase, putative; ribosomal RNA-processing
protein, putative [Candida dubliniensis CD36]
gi|223645785|emb|CAX40447.1| ATP-dependent rRNA helicase, putative [Candida dubliniensis CD36]
Length = 499
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 98/208 (47%), Gaps = 42/208 (20%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT+++ EKL + SL P + K+ T
Sbjct: 265 LFSATMTNKIEKLQRASLHNP--------------------------VKVSVSSKYQTAD 298
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHIDNVATKG 143
L + + + K +L L+ + + ++ F T A R LAR+L
Sbjct: 299 NLIQSMMLVNDGYKNTILIHLLNEFIGKSIIVFTRTVAHAQRTALLARIL---------- 348
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
N ++ L QR + +F+ + +++VA+D ARG+D+ ++D+VINY+ P +
Sbjct: 349 ---GFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDIVINYDIPTD 405
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
K YIHR+GRTAR GR G S++L+T ++
Sbjct: 406 SKAYIHRVGRTARAGRSGKSISLITQYD 433
>gi|434399810|ref|YP_007133814.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
gi|428270907|gb|AFZ36848.1| DEAD/DEAH box helicase domain protein [Stanieria cyanosphaera PCC
7437]
Length = 485
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 10/124 (8%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L ++ + + FV T + A L L AG ++ E + DL QR
Sbjct: 233 LQPILEIEEIDSAIIFVRTKKTASELTSKLQE--------AG--HSVDEYHGDLSQIQRE 282
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+++Q FR KI ++VA+D ARG+DVEN+ VINY+ PDN + YIHRIGRT R G+ GT+
Sbjct: 283 RLVQRFRDGKIKMIVATDIAARGLDVENLTHVINYDLPDNAETYIHRIGRTGRAGKHGTA 342
Query: 224 VTLV 227
+ LV
Sbjct: 343 IALV 346
>gi|84494615|ref|ZP_00993734.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
gi|84384108|gb|EAP99988.1| putative ATP-dependent RNA helicase [Janibacter sp. HTCC2649]
Length = 540
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 105/211 (49%), Gaps = 32/211 (15%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
+T P R Q +LFSAT+ L + + QP ++ E G GDT T
Sbjct: 212 MTSPGR-QTMLFSATMPGAVVALARRYMTQPTHIRAMQE--GEGDTSQTVKA-------- 260
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+++ + K +L ++++ + + F T + A ++A
Sbjct: 261 -----------ITQHVYRAHAMDKVEMLARMLQANGRGLTIVFSRTKRTAAKVA------ 303
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D++A +G A ++ DL R + ++ FR K+D++VA+D ARGIDVEN+ VI
Sbjct: 304 DDLAERG----FAAAAIHGDLGQGAREQALRAFRSGKVDVLVATDVAARGIDVENVTHVI 359
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P++ K Y+HRIGRT R G+ G +VT V
Sbjct: 360 NYQCPEDEKTYVHRIGRTGRAGQTGIAVTFV 390
>gi|426402225|ref|YP_007021196.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425858893|gb|AFX99928.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 466
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 102/223 (45%), Gaps = 39/223 (17%)
Query: 12 MWDTFLTYPSRPQR---LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSE 68
M D P PQ+ L FSAT+ H+ + L L PK + P SS
Sbjct: 125 MQDIKKILPLLPQKRHNLFFSATMPHEIQTLANRILVNPKKV----------EVTPVSST 174
Query: 69 AGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR 128
A F+ K P +L +L +++ A+ VL FV GA+R
Sbjct: 175 AEKVEQHVMFVDK---PQKLD-------------LLLHILKDEALSKVLVFVQMKYGANR 218
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
+ +D + G + A ++ D +QR + ++EF+ + ++VA+D ARGID
Sbjct: 219 V------VDRLTKAG----VTAAGIHGDKSQNQRQRALEEFKNGDVRVLVATDIAARGID 268
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ I VIN E P + Y+HRIGRTAR G G S++ T E
Sbjct: 269 IDGITHVINLELPHIPESYVHRIGRTARAGAAGVSISFCTAEE 311
>gi|167623474|ref|YP_001673768.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167353496|gb|ABZ76109.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 442
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 109/213 (51%), Gaps = 40/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT PE++ +L+ L + VE Q SSE
Sbjct: 202 PKTKQTLLFSATF---PEEVRELT---DSLLNNPVE------VQLQSSEE---------- 239
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ L +++ T + N K +L +LI+ + Q VL F + +RLA+ L +
Sbjct: 240 ------STLVQRVITVNRNRKTALLAELIKDNQWQQVLIFASAKYSCNRLAQKLEN---- 289
Query: 140 ATKGAGTKMNIAEVY-SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
AG AEV+ SD RN++++ F+ +I +++A+D ARGID+E + +VIN+
Sbjct: 290 ----AGI---TAEVFHSDKGQGARNRVLEGFKSGEISVLIATDIAARGIDIEKLPIVINF 342
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
E P + Y+HRIGR+ R G G +++L++ E
Sbjct: 343 ELPRSPADYMHRIGRSGRAGEAGLAMSLISHDE 375
>gi|451947099|ref|YP_007467694.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
gi|451906447|gb|AGF78041.1| DNA/RNA helicase, superfamily II [Desulfocapsa sulfexigens DSM
10523]
Length = 430
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSAT S D L + T V P T P S+ I
Sbjct: 176 PRTRQTLMFSATFSIDIRSLAK---------TLVRNPVEISVTPPNSTVEA--------I 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + +K P +L LI K + VL F T GA+RL L
Sbjct: 219 EHWIAPVDKKQK---------PALLAHLITKQKWERVLVFSRTKHGANRLTGYLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G K+ A ++ + + R K + +F+ +I ++VA+D ARGID++ + V+N++
Sbjct: 265 -----GNKITAAAIHGNKSQNARTKALADFKEGRIRILVATDIAARGIDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + YIHRIGRT R G G +++LV+ E
Sbjct: 320 LPNVAEDYIHRIGRTGRAGSAGQAISLVSADE 351
>gi|326430586|gb|EGD76156.1| DEAD box polypeptide 17 isoform 2 [Salpingoeca sp. ATCC 50818]
Length = 629
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 107/212 (50%), Gaps = 32/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q ++FSAT + ++ + L +P T G+D+L++
Sbjct: 387 PTPRQTVMFSATWPQEVRRIAKDYLNRPVKVT-----------------VGSDDLAAS-- 427
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K T ++ E + N + L L + K VL F + A RL + L +
Sbjct: 428 -KNVT--QIVEVIDPKQKNGRLLDLLRKYHKSRKNKVLVFALYKKEAARLEQFLQY---- 480
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG TK ++ DL RN+++QEF+ ++ L++A+D ARG+DV +++ VINY
Sbjct: 481 --KGYNTKA----IHGDLSQGDRNRVLQEFKSGEVPLMIATDVAARGLDVPDVEYVINYT 534
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P I++Y+HRIGRT R G +GT+ TL T H+
Sbjct: 535 FPLTIEEYVHRIGRTGRAGAKGTAHTLFTQHD 566
>gi|157963311|ref|YP_001503345.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157848311|gb|ABV88810.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 511
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 105/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D +L + + P + SV T +T +
Sbjct: 176 PAKRQNLMFSATFSDDIRQLAKGLVNNP-VEISVTPRNATANT----------------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + S+K VL +LI+++ Q VL F T GA+RLA+ L D
Sbjct: 219 QQWVCPVDQSQKTA---------VLVKLIKQNDWQQVLVFSRTKHGANRLAKNLEAKD-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K + +F+ + ++VA+D ARG+D++ + V+N++
Sbjct: 268 --------ITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV+ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGASGHAVSLVSNEE 351
>gi|330836276|ref|YP_004410917.1| DEAD/DEAH box helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748179|gb|AEC01535.1| DEAD/DEAH box helicase domain protein [Sphaerochaeta coccoides DSM
17374]
Length = 634
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL--A 130
NL+ F+ +S+ +T TN V Y++ ++ + ++ A + L
Sbjct: 195 NLAQRFMKDPKIVRVVSQDMTNLLTNQ---VCYEVRESDKLEALCRVIDVAVDFYGLVFC 251
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
R D V K + ++ DL QR I+ FRRR++ ++VA+D ARGID+
Sbjct: 252 RTKLQCDEVTEKLVARGQDADALHGDLSQKQREAILNRFRRRQLSVLVATDVAARGIDIP 311
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ VINY P N + YIHRIGRT R GR GT+VT +T E
Sbjct: 312 DLTHVINYSIPQNPEAYIHRIGRTGRAGRSGTAVTFITPRE 352
>gi|406989076|gb|EKE08894.1| hypothetical protein ACD_16C00239G0015 [uncultured bacterium]
Length = 413
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 96/212 (45%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q LFSAT+ KL Q L P+ T A + + I
Sbjct: 175 PPR-QTALFSATMPEPIRKLTQQFLKNPEEIT-----------------ISATSKAPSLI 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F A EK VL L++ + VL F N + +D V
Sbjct: 217 EQFIVRAPEKEKRD---------VLRSLLKAEDLHQVLVFCNRKR----------EVDIV 257
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D+ RNK +++F+ KIDL++ASD ARG+D+E++ VIN+
Sbjct: 258 YNSMKRYGFKVGALHGDITQSVRNKTLKDFKEGKIDLLIASDVAARGLDIEDLPGVINFH 317
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G++G + TLV+ HE
Sbjct: 318 VPTTPEDYIHRIGRTGRAGKEGKAFTLVSPHE 349
>gi|395763810|ref|ZP_10444479.1| ATP-dependent RNA helicase [Janthinobacterium lividum PAMC 25724]
Length = 515
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL A T P + E N
Sbjct: 216 PKQRQNLMFSATFSPEIKKL-----------------AATFLNDPLTIEVARSN------ 252
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T ++++ + S + K ++ L+R+ ++ V+ F NT GA RLAR+L
Sbjct: 253 ---QTADKVTQVVYKVSEDQKHALVAHLLRQRDLKQVIVFSNTKIGASRLARVLEQ---- 305
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
M+ ++ D +R ++ F++ +ID++VA+D ARG+D+ ++ VIN++
Sbjct: 306 ------EGMSATAIHGDKSQQERMAALEAFKKGEIDVLVATDVAARGLDISDLPCVINFD 359
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++++ + +
Sbjct: 360 LPYNAEDYVHRIGRTGRAGASGDAISIYSDKD 391
>gi|254472453|ref|ZP_05085853.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
gi|211958736|gb|EEA93936.1| ATP-dependent rna helicase, dead/deah box family [Pseudovibrio sp.
JE062]
Length = 453
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L FSAT+ + L + L P + S PA T +T
Sbjct: 178 PKKRQTLFFSATMPREIRDLSERFLTNP-VEVSTAPPATTVET----------------- 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++++ + K +L +L+ K + L F T +G+ RLA L+ D V
Sbjct: 220 --------VTQQIAHLEKDAKFPLLKELLEKDECERALVFTLTKKGSARLAARLN-ADGV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D+ +R K + +F+R K+ +VA+D ARGIDV +I VIN++
Sbjct: 271 PAEA---------IHGDMSQAERQKTLDKFKRGKLKTLVATDVAARGIDVSDISHVINFD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P+ + Y+HRIGRTAR G+ GT++T
Sbjct: 322 MPNATENYVHRIGRTARAGKSGTAITFC 349
>gi|294868682|ref|XP_002765642.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239865721|gb|EEQ98359.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 367
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+ P Q LFSAT+++ +L + SL T+P E
Sbjct: 131 SCPRDRQTFLFSATMTNKVSQLQRASL-----------------TRPVKCEVAR------ 167
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
KF L + K L L+ + V+ FV+T A R+A L H+
Sbjct: 168 ---KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHLG 224
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ N ++ + R + +FR ++VA+D ARG+D+ ++DVVIN
Sbjct: 225 H----------NCVCLHGKMTQTHRLGALNQFRAGTRSILVATDVAARGLDIPSVDVVIN 274
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ P N ++YIHR+GRTAR GR G SVTLVT ++
Sbjct: 275 FDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYD 308
>gi|357451623|ref|XP_003596088.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355485136|gb|AES66339.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 513
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 39/219 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F P Q L FSAT + + +KL + +Q KL+
Sbjct: 222 FQCLPENRQNLFFSATTTSNLQKLRE--RYQDKLYA-----------------------F 256
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV---LCFVNTAQGAHRLARL 132
+ G F T L +++ N+K + L ++ K G+ + FV+T + HRL +
Sbjct: 257 EAYEG-FKTVENLKQQVVFIPKNVKDVYLLHILSKMEDMGIRSAIVFVSTCRDCHRLNLM 315
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L +D A A +YS QR + + +F+ K+ +++A+D RG+D+ +
Sbjct: 316 LEVLDQEA----------AALYSFRSQAQRLEALHDFKSGKVPVLLATDVAGRGLDIPTV 365
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D+VINY+ P + YIHR+GRTAR GR G +++LVT ++
Sbjct: 366 DLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQND 404
>gi|452125822|ref|ZP_21938405.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|452129183|ref|ZP_21941759.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
gi|451920917|gb|EMD71062.1| ATP-dependent RNA helicase [Bordetella holmesii F627]
gi|451925053|gb|EMD75193.1| ATP-dependent RNA helicase [Bordetella holmesii H558]
Length = 457
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S++ KL + L QP E A N ++ +
Sbjct: 169 PPQRQGLLFSATFSNEIRKLGRSYL-----------------NQPIELEVAARNATADTV 211
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + + K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 212 TQIAYP---------MTGDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARDLER-DGV 261
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ +++++VA+D ARG+DV + VINY+
Sbjct: 262 KAE---------SIHGDKSQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYD 312
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 313 LPYNAEDYVHRIGRTGRAGASGEAIALFTPEE 344
>gi|54026546|ref|YP_120788.1| ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
gi|54018054|dbj|BAD59424.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152]
Length = 1148
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G + V+ DL
Sbjct: 274 KAELIARVLQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FAVGAVHGDLGQ 323
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
QR K + +FR+ ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 324 VQREKALDKFRKGVIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 383
Query: 220 QGTSVTLV 227
G +VTL+
Sbjct: 384 TGVAVTLI 391
>gi|403720926|ref|ZP_10944236.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207467|dbj|GAB88567.1| putative ATP-dependent RNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 529
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++ +G ++ V+ DL
Sbjct: 258 KAELVARILQADGRGATMIFTRTKRTAQKVA------DDLGERG----FSVGAVHGDLGQ 307
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR ID++VA+D ARGID++++ VINY+ PD+ K YIHRIGRT R GR
Sbjct: 308 VAREKALKRFRNGDIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYIHRIGRTGRAGR 367
Query: 220 QGTSVTLVTTHE 231
GT++TLV E
Sbjct: 368 TGTAITLVDWDE 379
>gi|91794376|ref|YP_564027.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
gi|91716378|gb|ABE56304.1| DEAD/DEAH box helicase-like protein [Shewanella denitrificans
OS217]
Length = 496
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S D +L + L + VE + T N ++ +
Sbjct: 176 PKQRQNLMFSATFSDDIRELAK------GLVNNPVEISVT-----------PRNATANTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ TP S+K + VL LI+ + Q VL F T GA+R+A+ L
Sbjct: 219 TQWVTPVGQSDKTS---------VLIDLIKDNNWQQVLVFSRTKHGANRIAKNLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K + +F+ K+ ++VA+D ARGID++ + V+N++
Sbjct: 265 -----AASIKAAAIHGNKSQGARTKALADFKAGKVQVMVATDIAARGIDIDQLPFVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 320 LPNVSEDYVHRIGRTGRAGASGQAVSLVADEE 351
>gi|71908923|ref|YP_286510.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Dechloromonas aromatica RCB]
gi|71848544|gb|AAZ48040.1| Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Dechloromonas aromatica RCB]
Length = 507
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + +KL L P L E N S I
Sbjct: 202 PAQRQSLLFSATFSEEIKKLADTMLKSPILI-----------------EVARRNQVSDTI 244
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ ++ S K +L +L++ ++ + F T QG RL R L
Sbjct: 245 ---------THRVHPVSEYGKRGLLTKLLKSGEIRQCIVFCRTKQGCSRLTRELQR---- 291
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG K + ++ D +R K ++ F+ + D ++A+D ARG+DV+++ VINYE
Sbjct: 292 ----AGIKAD--AIHGDKSQLERIKALEAFKGGETDALIATDVAARGLDVDDLPYVINYE 345
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G++G +++LV+ HE
Sbjct: 346 LPHTPEDYVHRIGRTGRAGKKGNAISLVSAHE 377
>gi|372490012|ref|YP_005029577.1| DNA/RNA helicase [Dechlorosoma suillum PS]
gi|359356565|gb|AEV27736.1| DNA/RNA helicase, superfamily II [Dechlorosoma suillum PS]
Length = 474
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S++ ++L ++ Q + V DT
Sbjct: 180 PKTRQSLLFSATFSNEIQRLAD-TMLQSPILVEVARRNQVNDT----------------- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ ++ + K +L +L+R + L F+ T QG RLAR L
Sbjct: 222 --------ITHRVHPVAETRKKDLLIKLLRSGEITQTLVFMRTKQGCGRLARELER---- 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG + ++ D ++R K + F+ ++VA+D ARG+D++++ VIN+E
Sbjct: 270 ----AGIAAD--SIHGDKSQNERIKALDAFKNGGCKVLVATDVAARGLDIDHLPYVINFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R GRQG +++LV HE
Sbjct: 324 LPHTPEDYVHRIGRTGRAGRQGNAISLVCAHE 355
>gi|167628080|ref|YP_001678580.1| DEAD/DEAH box helicase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254877152|ref|ZP_05249862.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167598081|gb|ABZ88079.1| DEAD-box subfamily ATP-dependent helicase [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|254843173|gb|EET21587.1| ATP-dependent RNA helicase deaD [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 581
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
QRLLFSAT+ D + Q L P K
Sbjct: 185 QRLLFSATIPTDIADIIQEYLRNP--------------------------CKIQVKAKTK 218
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T +++K K L +L+ GV+ FV T +A DN+ G
Sbjct: 219 TANTVTQKFIVIKGFRKIDALDRLLEVEETDGVIIFVKTKTSTIEVA------DNLKALG 272
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+A + D++ QR I+ +FR K D++VA+D +ARGID+E I VINY+ P++
Sbjct: 273 ----YRVAAINGDMQQSQREYIVDQFRSAKSDVLVATDVVARGIDLERISHVINYDMPND 328
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R GR+G S++LV E
Sbjct: 329 SDTYVHRIGRTGRAGREGISISLVPLKE 356
>gi|445499097|ref|ZP_21465952.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
gi|444789092|gb|ELX10640.1| ATP-dependent RNA helicase RhlE [Janthinobacterium sp. HH01]
Length = 550
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S + +KL A T T P + E N
Sbjct: 244 PAKRQNLMFSATFSPEIKKL-----------------ANTFLTNPVTIEVARSN------ 280
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T ++++ + N K + L+R+ ++ V+ F NT GA RLA+ L
Sbjct: 281 ---QTADKVTQVVYKVPENQKHALTAHLLRQRELKQVIIFSNTKIGASRLAKGLEQ---- 333
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
M ++ D +R ++ F++ +ID++VA+D ARG+D+ ++ VINY+
Sbjct: 334 ------EGMKAVAIHGDKTQQERMAALESFKKGEIDILVATDVAARGLDITDLPCVINYD 387
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P N + Y+HRIGRT R G G ++++ +
Sbjct: 388 LPYNAEDYVHRIGRTGRAGASGDALSIYS 416
>gi|428778354|ref|YP_007170141.1| DEAD/DEAH box helicase [Halothece sp. PCC 7418]
gi|428692633|gb|AFZ45927.1| DEAD/DEAH box helicase domain protein [Halothece sp. PCC 7418]
Length = 467
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 70/113 (61%), Gaps = 10/113 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ L FV T + A + + L T G ++ E + DL QR +++Q FR+ +
Sbjct: 243 ESALIFVRTKRTASEITQELQ------TAG----YSVDEYHGDLSQGQRERLVQRFRKNQ 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
+ LVVA+D ARG+DVEN+ VIN++ PDNI+ YIHRIGRT R G+ G +++L
Sbjct: 293 VRLVVATDIAARGLDVENLSHVINFDLPDNIETYIHRIGRTGRAGKTGIAISL 345
>gi|289705043|ref|ZP_06501454.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
gi|289558206|gb|EFD51486.1| putative ATP-dependent RNA helicase DeaD [Micrococcus luteus SK58]
Length = 715
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT A + ++ K L +++ GV+ FV T G LA+ L
Sbjct: 263 TTSATIRQRYLQVGHQWKFEALSRILETEEHDGVIAFVRTRAGTEELAQKLTR------- 315
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG K + D+ QR K +++ + ++D++VA+D ARG+DVE I V+NY+ P
Sbjct: 316 -AGFKA--VAISGDIAQKQREKTVEDLKAGRVDILVATDVAARGLDVERISHVVNYDIPQ 372
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HRIGRT R GRQG +V +T E
Sbjct: 373 DAESYVHRIGRTGRAGRQGDAVLFMTPRE 401
>gi|115488568|ref|NP_001066771.1| Os12g0481100 [Oryza sativa Japonica Group]
gi|113649278|dbj|BAF29790.1| Os12g0481100, partial [Oryza sativa Japonica Group]
Length = 832
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L LSL +P + P+
Sbjct: 399 PRRRQTMLFSATMTEEINELVTLSLNKPVRL----------EADPS-------------- 434
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + VL L K V+ F T AHRL +++ +
Sbjct: 435 --LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRL-KIIFGL 491
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 492 SG---------MKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVI 542
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P + + Y+HR+GRTAR GR+G +VT VT
Sbjct: 543 NFSCPRDARTYLHRVGRTARAGREGYAVTFVT 574
>gi|143454043|sp|Q0INC5.2|RH28_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 28
gi|77555691|gb|ABA98487.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa
Japonica Group]
gi|125579336|gb|EAZ20482.1| hypothetical protein OsJ_36091 [Oryza sativa Japonica Group]
gi|215706455|dbj|BAG93311.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 802
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L LSL +P + P+
Sbjct: 369 PRRRQTMLFSATMTEEINELVTLSLNKPVRL----------EADPS-------------- 404
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + VL L K V+ F T AHRL +++ +
Sbjct: 405 --LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRL-KIIFGL 461
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 462 SG---------MKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVI 512
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P + + Y+HR+GRTAR GR+G +VT VT
Sbjct: 513 NFSCPRDARTYLHRVGRTARAGREGYAVTFVT 544
>gi|357459393|ref|XP_003599977.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355489025|gb|AES70228.1| ATP-dependent RNA helicase [Medicago truncatula]
Length = 828
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 10/129 (7%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
VL + K V+ F T Q AHRL R++ + + + AE++ +L QR
Sbjct: 454 VLLAMCSKTFTSKVIIFSGTKQAAHRL-RIIFGL---------SGLKAAELHGNLTQAQR 503
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
++EFR++++D +VA+D ARG+D+ + VIN+ P ++ Y+HR+GRTAR GR G+
Sbjct: 504 LGALEEFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGS 563
Query: 223 SVTLVTTHE 231
+VT VT ++
Sbjct: 564 AVTFVTDND 572
>gi|317503390|ref|ZP_07961434.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
DSM 15606]
gi|315665485|gb|EFV05108.1| DEAD/DEAH box family ATP-dependent RNA helicase [Prevotella salivae
DSM 15606]
Length = 542
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 102/210 (48%), Gaps = 39/210 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ E+L + L PK+ V
Sbjct: 179 PQSCQTIMFSATMPDKIEELAKTLLKNPKVIKLAV------------------------- 213
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + + C K ++ + + ++ V+ F + ++A L
Sbjct: 214 ---SKPAEKIKQSAYVCYETQKMGIIKDIFKSDDLKRVIIFCGSKMKVKQVAGALQR--- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+N E++SDL R++++ +F+ + D++VA+D +ARGID+++I +VINY
Sbjct: 268 -------KHINCGEMHSDLDQAMRDEVMFKFKSGQFDVLVATDIVARGIDIDDISMVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ P + + Y+HRIGRTAR R+G+++T V+
Sbjct: 321 DVPHDAEDYVHRIGRTARAAREGSAITFVS 350
>gi|326315975|ref|YP_004233647.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323372811|gb|ADX45080.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 491
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSAT S + ++L AG+ P + E N T
Sbjct: 188 LLFSATFSPEIKRL-----------------AGSYLQNPVTIEVARPN---------ETA 221
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+ + ++ + + + K ++ ++R ++ FVN+ G RL+R L
Sbjct: 222 STVEQRFYSVNDDDKRRAIHHVLRTRGVKQAFVFVNSKLGCARLSRTLER---------- 271
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
+ A ++ D D+R K + F+R ++DL+V +D ARG+D++++ V N++ P N +
Sbjct: 272 EGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAE 331
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R G G +VTLV++ +
Sbjct: 332 DYVHRIGRTGRAGASGLAVTLVSSSD 357
>gi|397736750|ref|ZP_10503428.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
gi|396927331|gb|EJI94562.1| cold-shock DEAD box protein A [Rhodococcus sp. JVH1]
Length = 602
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 327 KAEMVARVLQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGSVHGDLNQ 376
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 377 VAREKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 436
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 437 TGIAVTLV 444
>gi|395765869|ref|ZP_10446460.1| hypothetical protein MCO_01336 [Bartonella sp. DB5-6]
gi|395410874|gb|EJF77421.1| hypothetical protein MCO_01336 [Bartonella sp. DB5-6]
Length = 459
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 98/210 (46%), Gaps = 37/210 (17%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76
L +P R Q LFSAT+ + L + L +P T V P GT
Sbjct: 181 LLHPER-QTALFSATMPKEINVLAKCLLNEP--VTIEVTPQGT----------------- 220
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
T AE+++KL T+ K VL +L+ A+ V+ F T GA + R L I
Sbjct: 221 -------TVAEITQKLYCVPTSEKKNVLGKLLTNPALTSVIVFTRTKHGADAVTRTLTKI 273
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
++A ++ + R ++ FR + + ++VA+D ARGIDV I VI
Sbjct: 274 G----------YSVATIHGNKSQSARQSALKAFREQAVRVLVATDIAARGIDVLGISHVI 323
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
NY+ PD + Y+HRIGRT R G G + TL
Sbjct: 324 NYDLPDEAESYVHRIGRTGRNGASGEAFTL 353
>gi|354616053|ref|ZP_09033745.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
gi|353219600|gb|EHB84147.1| DEAD/DEAH box helicase domain protein, partial [Saccharomonospora
paurometabolica YIM 90007]
Length = 471
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP ++ ++++ + F T + A ++A D++A +G A V+ DL
Sbjct: 240 KPELVAKVLQAEGRGLTMIFTRTKRTAQKVA------DDLAERG----FAAAAVHGDLGQ 289
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + ++ FR KID++VA+D ARGIDVE++ V+NY+ PD+ K Y+HRIGRT R G+
Sbjct: 290 GAREQALRAFRSGKIDVLVATDVAARGIDVEDVTHVVNYQTPDDQKTYVHRIGRTGRAGK 349
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 350 TGVALTLVDWDE 361
>gi|359426039|ref|ZP_09217126.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
gi|358238516|dbj|GAB06708.1| putative ATP-dependent RNA helicase [Gordonia amarae NBRC 15530]
Length = 556
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G + V+ DL
Sbjct: 285 KAELVARILQAEGRGATMVFTRTKRTAQKVA------DDLAERG----FKVGAVHGDLGQ 334
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 335 VAREKALKKFREGKIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR 394
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 395 TGIAITLVDWDE 406
>gi|156844737|ref|XP_001645430.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160380651|sp|A7TJM9.1|DRS1_VANPO RecName: Full=ATP-dependent RNA helicase DRS1
gi|156116092|gb|EDO17572.1| hypothetical protein Kpol_534p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 107/211 (50%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT++ + L LSL +P ++ P + A L+ F+
Sbjct: 407 PSKRQTLLFSATMNSRIKSLISLSLRKP--VRIMINPP----------KQAAARLTQEFV 454
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHI 136
+LKP +L+ LIRK G ++ FV + AH+L +L +
Sbjct: 455 ------------RIRKRDHLKPALLFYLIRKLDGTGQKRIVVFVARKEMAHKLRIILGLL 502
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M + E++ L +QR + + F+ ++ +++ +D +RG+D+ I+VVI
Sbjct: 503 G----------MKVGELHGSLTQEQRLQSVNNFKSLEVPVLICTDLASRGLDIPKIEVVI 552
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
N++ P + + Y+HR+GRTAR GR+G SVT V
Sbjct: 553 NFDMPKSYEIYLHRVGRTARAGREGRSVTFV 583
>gi|77461141|ref|YP_350648.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|77385144|gb|ABA76657.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens Pf0-1]
Length = 446
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S D L AG P S E N
Sbjct: 171 NIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPQSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 214 VAANTVKQW---------VVTVDKKRKPELFVHLMRKNKWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|120609836|ref|YP_969514.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120588300|gb|ABM31740.1| DEAD/DEAH box helicase domain protein [Acidovorax citrulli AAC00-1]
Length = 489
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 100/206 (48%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSAT S + ++L AG+ P + E N T
Sbjct: 188 LLFSATFSPEIKRL-----------------AGSYLQNPVTIEVARPN---------ETA 221
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+ + ++ + + + K ++ ++R ++ FVN+ G RL+R L
Sbjct: 222 STVEQRFYSVNDDDKRRAIHHVLRTRGVKQAFVFVNSKLGCARLSRTLER---------- 271
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
+ A ++ D D+R K + F+R ++DL+V +D ARG+D++++ V N++ P N +
Sbjct: 272 EGLKAAALHGDKSQDERLKALDAFKRGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFNAE 331
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R G G +VTLV++ +
Sbjct: 332 DYVHRIGRTGRAGASGLAVTLVSSSD 357
>gi|167625497|ref|YP_001675791.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167355519|gb|ABZ78132.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 492
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 109/212 (51%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D +L + L + VE + T N ++ +
Sbjct: 176 PAKRQNLMFSATFSDDIRQLAK------GLVNNPVEISVT-----------PRNATANTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K+ VL +LI+++ Q VL F T GA+RLA+ N+
Sbjct: 219 KQWICPVDHGQKVA---------VLIELIKQNDWQQVLVFSRTKHGANRLAK------NL 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG + A ++ + R K + +F+ + ++VA+D ARG+D++ + V+N++
Sbjct: 264 EAKG----ITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGASGHAVSLVSSEE 351
>gi|397169056|ref|ZP_10492491.1| ATP-dependent RNA helicase [Alishewanella aestuarii B11]
gi|396089136|gb|EJI86711.1| ATP-dependent RNA helicase [Alishewanella aestuarii B11]
Length = 418
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + L + L +P L +V P T + I
Sbjct: 180 PPKRQNLLFSATFSDEIRTLAKGLLHEP-LEVTVTPPNSTVER----------------I 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K NL L Q I++H Q VL F T GA++L LL
Sbjct: 223 EQWLYPVDKGQK-----ANL----LIQQIKQHNWQQVLVFTKTKHGANKLTLLLEKAGIS 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + EF+ I ++VA+D ARG+D++ + V+NYE
Sbjct: 274 AMAIHGNKSQNA----------RTKALAEFKAGGIRVLVATDIAARGLDIQQLPQVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 324 LPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEE 355
>gi|412992467|emb|CCO18447.1| predicted protein [Bathycoccus prasinos]
Length = 818
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
+FSAT+ E+L + L P + T G+ +S I +
Sbjct: 596 MFSATMPPSVERLARTYLRNPAVVT-----------------IGSAGKTSDLIKQTVIWV 638
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
SEK T L Q++ +H + FVNT +G +D+ T
Sbjct: 639 NRSEKERT---------LEQILSQHTQTQAIVFVNTKRG----------VDSCVTACHSM 679
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
+ ++ D R + F+R D++VA+D RGIDV+ ID+V+NYE P +I+
Sbjct: 680 GYSCGSIHGGKGQDAREAALTGFKRGDFDILVATDVAGRGIDVKGIDLVVNYELPASIEN 739
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y HRIGRT R GR+GT+V+ +T+ +
Sbjct: 740 YTHRIGRTGRAGRKGTAVSFITSED 764
>gi|408479143|ref|ZP_11185362.1| ATP-dependent RNA helicase [Pseudomonas sp. R81]
Length = 444
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S D L AG P S E N
Sbjct: 171 NIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ P + K P + L+RK + VL F T G
Sbjct: 214 VAANTVKQWVVPVDKKRK---------PELFVHLMRKGRWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADE 352
>gi|398980078|ref|ZP_10688813.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|398135037|gb|EJM24167.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 446
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S D L AG P S E N
Sbjct: 171 NIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPQSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 214 VAANTVKQW---------VVTVDKKRKPELFVHLMRKNKWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|365760375|gb|EHN02100.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 503
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 263 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 296
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 297 TLVQALMVVPGGLKNTYLIYLLNESIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 352
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 353 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 406
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 407 YIHRVGRTARAGRSGKSISLVSQYD 431
>gi|150008034|ref|YP_001302777.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
gi|149936458|gb|ABR43155.1| ATP-dependent RNA helicase [Parabacteroides distasonis ATCC 8503]
Length = 426
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 217 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 268
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 269 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 326
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 327 EDYVHRIGRTARGTNGEGLAITFVSIDE 354
>gi|256374971|ref|YP_003098631.1| DEAD/DEAH box helicase domain-containing protein [Actinosynnema
mirum DSM 43827]
gi|255919274|gb|ACU34785.1| DEAD/DEAH box helicase domain protein [Actinosynnema mirum DSM
43827]
Length = 609
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 70/115 (60%), Gaps = 10/115 (8%)
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176
+ F T + A ++A D++A +G +A V+ DL R + ++ FR KID+
Sbjct: 297 MIFTRTKRTAQKVA------DDMAERG----FAVAAVHGDLGQGAREQALRAFRSGKIDV 346
Query: 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+VA+D ARGIDVE + V+NY+ P++ K Y+HRIGRT R GR G +VTLV E
Sbjct: 347 LVATDVAARGIDVEGVTHVVNYQCPEDEKTYVHRIGRTGRAGRTGVAVTLVDWDE 401
>gi|260948130|ref|XP_002618362.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
gi|238848234|gb|EEQ37698.1| hypothetical protein CLUG_01821 [Clavispora lusitaniae ATCC 42720]
Length = 560
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL L+ +VV P S+ + AD L G++
Sbjct: 277 QSMLFSATQTTKVEDLARMSLRPGPLYINVV---------PESAASTADGLEQGYV---- 323
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++A + ++ F+++ LL++ID
Sbjct: 324 ----------VCESDKRFLLLFSFLKRNAKKKIIVFLSSCNCVKYFGELLNYID------ 367
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + +++ K +R EF K +++ +D ARG+D+ +D ++ ++ PD+
Sbjct: 368 ----LPVLDLHGKQKQAKRTNTFFEFCNAKQGILICTDVAARGLDIPAVDWIVQFDPPDD 423
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T E
Sbjct: 424 PRDYIHRVGRTARGTQGKGKSLMFLTPSE 452
>gi|256840789|ref|ZP_05546297.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
gi|298376614|ref|ZP_06986569.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_19]
gi|301309869|ref|ZP_07215808.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
20_3]
gi|256738061|gb|EEU51387.1| ATP-dependent RNA helicase [Parabacteroides sp. D13]
gi|298266492|gb|EFI08150.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
3_1_19]
gi|300831443|gb|EFK62074.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacteroides sp.
20_3]
Length = 426
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 217 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 268
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 269 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 326
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 327 EDYVHRIGRTARGTNGEGLAITFVSIDE 354
>gi|393763310|ref|ZP_10351931.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
gi|392605650|gb|EIW88540.1| DEAD/DEAH box helicase [Alishewanella agri BL06]
Length = 416
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + L + L +P L +V P T + I
Sbjct: 180 PPKRQNLLFSATFSEEIRTLAKGLLHEP-LEVTVTPPNSTVER----------------I 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K NL L Q I+ H Q VL F T GA++L LL
Sbjct: 223 EQWLYPVDKGQK-----ANL----LIQQIKAHNWQQVLVFTKTKHGANKLTLLLEKAGIS 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K + R K + EF+ I ++VA+D ARG+D++ + V+NYE
Sbjct: 274 AMAIHGNKSQ----------NARTKALAEFKAGGIRVLVATDIAARGLDIQQLPQVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 324 LPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEE 355
>gi|255013264|ref|ZP_05285390.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_7]
Length = 426
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 217 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 268
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 269 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 326
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 327 EDYVHRIGRTARGTNGEGLAITFVSIDE 354
>gi|395793251|ref|ZP_10472656.1| hypothetical protein MEI_01277 [Bartonella vinsonii subsp.
arupensis Pm136co]
gi|423713021|ref|ZP_17687281.1| hypothetical protein ME1_00027 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395424647|gb|EJF90827.1| hypothetical protein ME1_00027 [Bartonella vinsonii subsp.
arupensis OK-94-513]
gi|395431565|gb|EJF97583.1| hypothetical protein MEI_01277 [Bartonella vinsonii subsp.
arupensis Pm136co]
Length = 459
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT AE+ +KL ST K VL +L+ V+ F T GA + R L
Sbjct: 219 TTAAEIIQKLYCVSTREKKNVLCKLLTNPVFASVIVFTRTKHGADAVTRSLEK------- 271
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ ++A ++ + + R ++ FR R + ++VA+D ARGID+ I VINY+ PD
Sbjct: 272 ---SGYSVATIHGNKSQNARQSALKAFRERAVQILVATDIAARGIDIPGISHVINYDLPD 328
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 329 EAESYVHRIGRTGRNGASGEAITL 352
>gi|262381389|ref|ZP_06074527.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
gi|262296566|gb|EEY84496.1| ATP-dependent RNA helicase [Bacteroides sp. 2_1_33B]
Length = 408
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 199 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 250
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 251 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 308
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 309 EDYVHRIGRTARGTNGEGLAITFVSIDE 336
>gi|212693337|ref|ZP_03301465.1| hypothetical protein BACDOR_02849 [Bacteroides dorei DSM 17855]
gi|423238539|ref|ZP_17219655.1| hypothetical protein HMPREF1065_00278 [Bacteroides dorei
CL03T12C01]
gi|212664102|gb|EEB24674.1| DEAD/DEAH box helicase [Bacteroides dorei DSM 17855]
gi|392648222|gb|EIY41912.1| hypothetical protein HMPREF1065_00278 [Bacteroides dorei
CL03T12C01]
Length = 423
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 65/85 (76%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K+N+ E++SDL+ QR +I++EF+ +I++++A+D ++RGID+++I +VINY+ P + +
Sbjct: 268 KLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVSRGIDIDDIRLVINYDVPHDSED 327
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T V+ E
Sbjct: 328 YVHRIGRTARANHDGCAITFVSEKE 352
>gi|410079330|ref|XP_003957246.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
gi|372463831|emb|CCF58111.1| hypothetical protein KAFR_0D04630 [Kazachstania africana CBS 2517]
Length = 487
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 247 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 280
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R+A L + ++
Sbjct: 281 TLVQTLMVVPGGLKNTFLIYLLNEFHGKTFIIFTRTKANAERIAGLANLLE--------- 331
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
N ++ DL +QR + F+ K ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 332 -FNATALHGDLNQNQRTGALDLFKAGKRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 390
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 391 YIHRVGRTARAGRSGKSISLVSQYD 415
>gi|218186850|gb|EEC69277.1| hypothetical protein OsI_38328 [Oryza sativa Indica Group]
Length = 802
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 39/212 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +LFSAT++ + +L LSL +P + P+
Sbjct: 369 PRRRQTMLFSATMTEEINELVTLSLNKPVRL----------EADPS-------------- 404
Query: 80 GKFTTPAELSE---KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
PA L+E ++ + VL L K V+ F T AHRL +++ +
Sbjct: 405 --LKRPATLTEEVVRIRRAREANQEAVLLALCLKTFKDKVIIFSGTKHSAHRL-KIIFGL 461
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
M AE++ +L QR + ++ F+++++D ++A+D ARGID+ + VI
Sbjct: 462 SG---------MKAAELHGNLTQAQRLEALELFKKQEVDFLIATDVAARGIDIVGVRTVI 512
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
N+ P + + Y+HR+GRTAR GR+G +VT VT
Sbjct: 513 NFSCPRDARTYLHRVGRTARAGREGYAVTFVT 544
>gi|170093371|ref|XP_001877907.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647766|gb|EDR12010.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 441
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 97/205 (47%), Gaps = 35/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ + KL + SL + P +A + ++TT +
Sbjct: 184 LFSATMTANVSKLQRASL-----------------SDPVRVDAS--------LFRYTTVS 218
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + C K + L LI ++ FV T A RL+ +L +
Sbjct: 219 TLVQHYLLCPLVEKEVTLVYLINSLVQNLIIVFVRTVADAKRLSIILRSLG--------- 269
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
+ ++ +L QR F+ K ++VA+D +RG+DV N+DVVINY+ P + K
Sbjct: 270 -FDAVPLHGELTQSQRLGAFTRFKSGKSKILVATDVASRGLDVPNVDVVINYDTPTHSKD 328
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S+ +VT ++
Sbjct: 329 YIHRVGRTARAGRAGKSILMVTQYD 353
>gi|157376496|ref|YP_001475096.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157318870|gb|ABV37968.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 419
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q LLFSAT F P +F + P E N
Sbjct: 184 PSKRQTLLFSAT-------------FDPSVFAL----SKRLQQDPKLIEVDKRN------ 220
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T A++ + + + K ++ L++ Q VL F QGA DN+
Sbjct: 221 ---TLAAKVEQVVYAVDADRKSELICHLVKSKLWQQVLIFSRKKQGA----------DNI 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A K + + DL R K +Q+F++ +I ++VA+D ARG+DVE + VV+NYE
Sbjct: 268 AAKMVKAGIKAQAFHGDLSQAVREKALQQFKQGEIQVLVATDVAARGLDVEELKVVVNYE 327
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 328 LPFIAEDYIHRIGRTGRAGNAGLAITLYSEED 359
>gi|237710076|ref|ZP_04540557.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|265753725|ref|ZP_06089080.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|345515323|ref|ZP_08794827.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|423231344|ref|ZP_17217747.1| hypothetical protein HMPREF1063_03567 [Bacteroides dorei
CL02T00C15]
gi|423245933|ref|ZP_17227006.1| hypothetical protein HMPREF1064_03212 [Bacteroides dorei
CL02T12C06]
gi|229437984|gb|EEO48061.1| ATP-dependent RNA helicase [Bacteroides dorei 5_1_36/D4]
gi|229456169|gb|EEO61890.1| ATP-dependent RNA helicase [Bacteroides sp. 9_1_42FAA]
gi|263235439|gb|EEZ20963.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_33FAA]
gi|392628230|gb|EIY22263.1| hypothetical protein HMPREF1063_03567 [Bacteroides dorei
CL02T00C15]
gi|392637439|gb|EIY31307.1| hypothetical protein HMPREF1064_03212 [Bacteroides dorei
CL02T12C06]
Length = 423
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 65/85 (76%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K+N+ E++SDL+ QR +I++EF+ +I++++A+D ++RGID+++I +VINY+ P + +
Sbjct: 268 KLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVSRGIDIDDIRLVINYDVPHDSED 327
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T V+ E
Sbjct: 328 YVHRIGRTARANHDGCAITFVSEKE 352
>gi|111023319|ref|YP_706291.1| cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
gi|110822849|gb|ABG98133.1| probable cold-shock DEAD-box protein [Rhodococcus jostii RHA1]
Length = 555
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 277 KAEMVARVLQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGSVHGDLNQ 326
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 327 VAREKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 386
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 387 TGIAVTLV 394
>gi|110633776|ref|YP_673984.1| DEAD/DEAH box helicase [Chelativorans sp. BNC1]
gi|110284760|gb|ABG62819.1| DEAD/DEAH box helicase-like protein [Chelativorans sp. BNC1]
Length = 460
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 97/214 (45%), Gaps = 37/214 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T+P+R Q LFSAT+ + E L L +P V P GT
Sbjct: 201 THPAR-QTALFSATMPREIEALASSLLKEPVRIE--VSPQGT------------------ 239
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
T AE+ + + T K +L +++ M V+ F T GA R+ + L H
Sbjct: 240 ------TAAEIRQSVIMARTKQKRKLLSEMLADEKMAQVIIFSRTKHGADRVTKDLQH-- 291
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A ++ + + R + + +FR + ++VA+D ARGIDV I V+N
Sbjct: 292 --------DGFQAAVIHGNKSQNARQRALNDFREGAVRILVATDIAARGIDVPGISHVVN 343
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ PD + Y+HRIGRT R G +G ++TL E
Sbjct: 344 FDLPDEAESYVHRIGRTGRNGAEGEAITLCDPGE 377
>gi|330817865|ref|YP_004361570.1| ATP-dependent RNA helicase [Burkholderia gladioli BSR3]
gi|327370258|gb|AEA61614.1| Putative ATP-dependent RNA helicase 2 [Burkholderia gladioli BSR3]
Length = 485
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + +KL A T + P + E N
Sbjct: 190 PKQRQTLLFSATFSPEIKKL-----------------ASTYLSNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + + K + +LIR +++ V+ F N+ GA RLAR L V
Sbjct: 227 ---ATATNVTQVVYEIAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +++ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALDAFKRGEVEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|295675961|ref|YP_003604485.1| DEAD/DEAH box helicase [Burkholderia sp. CCGE1002]
gi|295435804|gb|ADG14974.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1002]
Length = 484
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQVVYEVAEGDKTGAVVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +++ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQSERMQALDAFKRGEVEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|319640865|ref|ZP_07995576.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
gi|345519525|ref|ZP_08798945.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
gi|254836893|gb|EET17202.1| ATP-dependent RNA helicase [Bacteroides sp. 4_3_47FAA]
gi|317387502|gb|EFV68370.1| ATP-dependent RNA helicase [Bacteroides sp. 3_1_40A]
Length = 425
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 65/85 (76%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K+N+ E++SDL+ QR +I++EF+ +I++++A+D ++RGID+++I +VINY+ P + +
Sbjct: 268 KLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVSRGIDIDDIRLVINYDVPHDSED 327
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T V+ E
Sbjct: 328 YVHRIGRTARANHDGCAITFVSEKE 352
>gi|365984991|ref|XP_003669328.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
gi|343768096|emb|CCD24085.1| hypothetical protein NDAI_0C04250 [Naumovozyma dairenensis CBS 421]
Length = 504
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 264 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 297
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ ++ + + F T A R++ L + ++
Sbjct: 298 TLVQTLIVVPGGLKNTFLIYLLNEYIGKSTIIFTRTKANAERISGLCNLLE--------- 348
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
N ++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 349 -FNATALHGDLNQNQRTGALDLFKAGRKTILVATDVAARGLDIPSVDIVINYDIPVDSKS 407
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 408 YIHRVGRTARAGRSGKSISLVSQYD 432
>gi|260577895|ref|ZP_05845826.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
gi|258603989|gb|EEW17235.1| ATP-dependent RNA helicase DeaD [Corynebacterium jeikeium ATCC
43734]
Length = 458
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 65/103 (63%)
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
AR VA + A + V+ D++ + R + + EFRR ++D++VA+D ARGID
Sbjct: 292 FARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLDEFRRNEVDVMVATDVAARGID 351
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E++ VINY+ PD+ + Y+HRIGRT R G GT+V+L+ E
Sbjct: 352 IEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLIGWDE 394
>gi|188994014|ref|YP_001928266.1| ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC 33277]
gi|334147112|ref|YP_004510041.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis
TDC60]
gi|188593694|dbj|BAG32669.1| putative ATP-dependent RNA helicase [Porphyromonas gingivalis ATCC
33277]
gi|333804268|dbj|BAK25475.1| DEAD-box ATP dependent DNA helicase [Porphyromonas gingivalis
TDC60]
Length = 427
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q ++FSAT+ P K+ KL S++ P E I
Sbjct: 178 PSSCQTVMFSATM---PPKIR-------KLAASILR-------DPIEVE----------I 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P + + C K +L +L + A + + F + L L +
Sbjct: 211 AISRPPESIMQSAYICYEAQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
N+A+++SDL+ QR +++++F+ +D++VA+D +ARGID++NI VVINY+
Sbjct: 268 -------GFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDIDNIRVVINYD 320
Query: 200 APDNIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
P + + Y+HRIGRTARG +G ++T V+ E
Sbjct: 321 IPHDPEDYVHRIGRTARGTNGEGLAITFVSEEE 353
>gi|71018173|ref|XP_759317.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
gi|74701966|sp|Q4P9P3.1|DRS1_USTMA RecName: Full=ATP-dependent RNA helicase DRS1
gi|46099167|gb|EAK84400.1| hypothetical protein UM03170.1 [Ustilago maydis 521]
Length = 932
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 21/212 (9%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSS-------EAGADNLS 75
Q +LFSAT++ D E+L +LSL +P +LF V+P T + G +
Sbjct: 517 QTMLFSATMTDDVEQLVRLSLKRPVRLF---VDPKRTTAKKLIQEFVRVRGTGTGGVAGA 573
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G G PA +P +L L + + FV + + AH+L +
Sbjct: 574 DGLSGIQDQPATWISGGRKSEDAQRPALLLSLCTRTFTSQTMIFVRSKKLAHQLKIVFGL 633
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ ++ E++ DL +QR + +FR K D ++A+D +RG+D++ + V
Sbjct: 634 LG----------LSAGELHGDLSQEQRIDALTDFRDGKTDFLLATDLASRGLDIKGVQTV 683
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P + Y+HR+GRTAR GR G +VTLV
Sbjct: 684 INYDMPGQFEAYLHRVGRTARAGRNGRAVTLV 715
>gi|374387215|ref|ZP_09644702.1| hypothetical protein HMPREF9449_03088 [Odoribacter laneus YIT
12061]
gi|373222610|gb|EHP44980.1| hypothetical protein HMPREF9449_03088 [Odoribacter laneus YIT
12061]
Length = 414
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 107/212 (50%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q ++FSAT+ P K+ QL+ T + +P +EA
Sbjct: 178 PEKRQTIMFSATM---PPKIQQLAK------TILHDPVEVKIAVSKPNEA---------- 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++ C+ K ++ +L K + F ++ Q LA +L +
Sbjct: 219 --------ITQAAYICTEAQKMGLIRELFGKPVKSKSIIFSSSKQKVKELAHILKRM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K N+A ++SDL+ +R K++ +F+ KI ++VA+D +ARGID+E+I +V+NY+
Sbjct: 268 -------KFNVAAMHSDLEQAEREKVMLDFKNNKIKVLVATDIVARGIDIEDIGMVLNYD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + YIHRIGRTAR +G ++T V+ E
Sbjct: 321 VPHDPEDYIHRIGRTARANAEGLAITFVSEKE 352
>gi|297622829|ref|YP_003704263.1| DEAD/DEAH box helicase [Truepera radiovictrix DSM 17093]
gi|297164009|gb|ADI13720.1| DEAD/DEAH box helicase domain protein [Truepera radiovictrix DSM
17093]
Length = 442
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P QRLLFSAT+ + +L + L P I
Sbjct: 178 PEGAQRLLFSATMPPELRRLAEALLRAPVTLQ---------------------------I 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
G+ A +S L + K +L L+R H ++ L F T +GA RLA L +
Sbjct: 211 GRTEAAATVSHALYPVAREQKTALLKHLLRHHDIRSALVFTRTKRGAKRLAESLERDNFF 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT + +L +R K + FR ++ ++VA+D ARGIDV + V NY+
Sbjct: 271 AT----------SLQGNLSQTKRQKALDAFRAGEVHVLVATDIAARGIDVARVSHVFNYD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P + Y HRIGRT R R G + T VT
Sbjct: 321 VPTTAEAYTHRIGRTGRAARTGEACTFVT 349
>gi|323342311|ref|ZP_08082543.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322463423|gb|EFY08617.1| DEAD/DEAH family ATP-dependent RNA helicase [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 594
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 36/215 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ F P Q FSAT+ + KL + L +P+ T +N
Sbjct: 184 EIFSFLPEERQFAFFSATMPKEIVKLSEKFLVEPERIT-----------------LSRNN 226
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
L+ I + E +K+ + QL++ H G + F NT +
Sbjct: 227 LTVSRIKQIYYTVESRDKVD---------LTIQLLQLHKTSGTMIFCNTKK--------- 268
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + T+ ++ D+K + R+ ++ F++ + +++A+D ARGIDV+++D
Sbjct: 269 -MVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAARGIDVDSMD 327
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
VVINY+ P ++ Y+HRIGRT R G++G ++TLV+
Sbjct: 328 VVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVS 362
>gi|294776591|ref|ZP_06742061.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
gi|294449579|gb|EFG18109.1| DEAD/DEAH box helicase [Bacteroides vulgatus PC510]
Length = 425
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 65/85 (76%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K+N+ E++SDL+ QR +I++EF+ +I++++A+D ++RGID+++I +VINY+ P + +
Sbjct: 268 KLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVSRGIDIDDIRLVINYDVPHDSED 327
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T V+ E
Sbjct: 328 YVHRIGRTARANHDGCAITFVSEKE 352
>gi|441507538|ref|ZP_20989464.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
gi|441448614|dbj|GAC47425.1| putative ATP-dependent RNA helicase [Gordonia aichiensis NBRC
108223]
Length = 544
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 263 KAELVARILQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 312
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR +ID++VA+D ARGID++++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 313 VAREKALKKFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGR 372
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 373 TGIAITLVDWDE 384
>gi|347818470|ref|ZP_08871904.1| DEAD/DEAH box helicase domain-containing protein [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 486
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 8 GLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G + L+Y P + LLFSAT S + +L AG+ P +
Sbjct: 169 GFLPDLQRILSYLPKQRTTLLFSATFSPEIRRL-----------------AGSYLDNPVT 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E N T A + ++ + + K ++Q++R H + FVN+ G
Sbjct: 212 IEVARPN---------ETAATVEQRFYSANDEDKRRAIHQVLRTHGLTQAFIFVNSKLGC 262
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
RLAR L + ++ D D+R K ++ F+ +DL+V +D ARG
Sbjct: 263 ARLARSLER----------EGLRTTALHGDKSQDERLKALEAFKSGAVDLLVCTDVAARG 312
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D++++ V N++ P N + Y+HRIGRT R G G + TLV+ +
Sbjct: 313 LDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAFTLVSASD 357
>gi|150005667|ref|YP_001300411.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
gi|423315247|ref|ZP_17293178.1| hypothetical protein HMPREF1058_03790 [Bacteroides vulgatus
CL09T03C04]
gi|149934091|gb|ABR40789.1| ATP-dependent RNA helicase [Bacteroides vulgatus ATCC 8482]
gi|392680264|gb|EIY73637.1| hypothetical protein HMPREF1058_03790 [Bacteroides vulgatus
CL09T03C04]
Length = 425
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 65/85 (76%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K+N+ E++SDL+ QR +I++EF+ +I++++A+D ++RGID+++I +VINY+ P + +
Sbjct: 268 KLNVGEMHSDLEQSQREQIMREFKSGRINILIATDIVSRGIDIDDIRLVINYDVPHDSED 327
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRTAR G ++T V+ E
Sbjct: 328 YVHRIGRTARANHDGCAITFVSEKE 352
>gi|68536703|ref|YP_251408.1| ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
gi|68264302|emb|CAI37790.1| putative ATP-dependent RNA helicase [Corynebacterium jeikeium K411]
Length = 453
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 65/103 (63%)
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
AR VA + A + V+ D++ + R + + EFRR ++D++VA+D ARGID
Sbjct: 287 FARTKRQAAGVAEELAKLGFRVGAVHGDMRQNDREESLDEFRRNEVDVMVATDVAARGID 346
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E++ VINY+ PD+ + Y+HRIGRT R G GT+V+L+ E
Sbjct: 347 IEDVTHVINYQVPDDERTYVHRIGRTGRAGNTGTAVSLIGWDE 389
>gi|34541680|ref|NP_906159.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W83]
gi|419970031|ref|ZP_14485545.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
gi|34397998|gb|AAQ67058.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Porphyromonas
gingivalis W83]
gi|392611718|gb|EIW94447.1| DEAD/DEAH box helicase [Porphyromonas gingivalis W50]
Length = 427
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 104/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q ++FSAT+ P K+ KL S++ P E I
Sbjct: 178 PSSCQTVMFSATM---PPKIR-------KLAASILR-------DPIEVE----------I 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
P + + C K +L +L + A + + F + L L +
Sbjct: 211 AISRPPESIMQSAYICHEAQKLPILRKLFEQSAPKRTIIFASAKLKVRELTSTLRKM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
N+A+++SDL+ QR +++++F+ +D++VA+D +ARGID++NI VVINY+
Sbjct: 268 -------GFNVADMHSDLEQSQREQVMRDFKNGYVDVLVATDIVARGIDIDNIRVVINYD 320
Query: 200 APDNIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
P + + Y+HRIGRTARG +G ++T V+ E
Sbjct: 321 IPHDPEDYVHRIGRTARGTNGEGLAITFVSEEE 353
>gi|331694934|ref|YP_004331173.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326949623|gb|AEA23320.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans
CB1190]
Length = 621
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 107 LIRKHAMQGVLCFVNTAQGAHR-----LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161
+ R HAM V Q R AR + VA A A V+ DL
Sbjct: 332 VYRAHAMDKVELLTRVLQAKDRGLTMIFARTKRTVQRVADDLAERGFAAAAVHGDLGQGA 391
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
R + ++ FR K+D++VA+D ARGIDV ++ VINY+ P++ K Y+HRIGRT R G++G
Sbjct: 392 REQALRAFRSGKVDVLVATDVAARGIDVTDVTHVINYQCPEDAKTYVHRIGRTGRAGKEG 451
Query: 222 TSVTLVTTHE 231
+VTLV E
Sbjct: 452 VAVTLVDWDE 461
>gi|443478716|ref|ZP_21068435.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
gi|443015958|gb|ELS30726.1| DEAD/DEAH box helicase domain protein [Pseudanabaena biceps PCC
7429]
Length = 456
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT SHD + F L +P E + N ++ +
Sbjct: 181 PKQRQNLLFSATFSHD------IKTFASTLLD-----------RPVMVEVASQNATADLV 223
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + K +L LI+ + VL F T GA RL + LH D V
Sbjct: 224 TQRIFPVDRDRKRE---------LLTHLIQTNNWYQVLVFTRTKHGADRLVKQLHQDDIV 274
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R + + +F+ + ++VA+D ARG+D+ + V+NYE
Sbjct: 275 AMAIHGNKSQAA----------RTRALGKFKDGSLQVLVATDIAARGLDISELPQVVNYE 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV E
Sbjct: 325 LPNVPEDYVHRIGRTGRAGSSGEAISLVCVDE 356
>gi|432331921|ref|YP_007250064.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
gi|432138630|gb|AGB03557.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
Length = 533
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 105/213 (49%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLS-LFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P + Q LLFSAT+ P+ + ++S FQ K VE A
Sbjct: 177 PQKRQTLLFSATM---PKPILEISRQFQNKPEFVRVEYA--------------------- 212
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ T P ++ + K VL +LI + F NT + A L+
Sbjct: 213 --ELTVP-QIEQSYIEVREREKLDVLCRLIDLADPNLAIIFCNTKRRAEELS-------- 261
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
TK E++ D+K QR++++ FR+ ID+++A+D ARGIDV+++D+VINY
Sbjct: 262 --TKVRARGYRADELHGDMKQSQRDRVMGGFRKGIIDILIATDVAARGIDVDDVDMVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P +++ Y+HRIGRT R GR G +++ VT +
Sbjct: 320 DIPQDVEYYVHRIGRTGRAGRSGRAISFVTPKD 352
>gi|82703770|ref|YP_413336.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
gi|82411835|gb|ABB75944.1| DEAD/DEAH box helicase-like protein [Nitrosospira multiformis ATCC
25196]
Length = 510
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 97/214 (45%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS+ Q L+FSAT S + +KL AG +P E N + I
Sbjct: 180 PSQRQSLMFSATFSDEIKKL-----------------AGKLLREPVLVEVARRNTITELI 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH--HID 137
P K +L LI+ +Q VL F T GA RLA L HI
Sbjct: 223 THVVHPVVRERKRE---------LLAHLIKSQDLQQVLVFARTKHGASRLAHQLERDHIS 273
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A G T+ QR + + +F++ + ++VA+D ARG+D+E + V+N
Sbjct: 274 ATAIHGDKTQT------------QRTEALAKFKQGVVRVLVATDVAARGLDIEELPHVVN 321
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E P N + Y+HRIGRT R G +G +V+LV E
Sbjct: 322 FELPTNPEDYVHRIGRTGRAGTKGDAVSLVCEDE 355
>gi|336066886|ref|YP_004561744.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296832|dbj|BAK32703.1| ATP-dependent RNA helicase DeaD [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 584
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 36/223 (16%)
Query: 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
+G + + + F P Q FSAT+ + KL + L +P+ T
Sbjct: 160 MGFIEDIEEIFSFLPEERQFAFFSATMPKEIVKLSEKFLVEPERIT-------------- 205
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQG 125
+NL+ I + E +K+ + QL++ H G + F NT +
Sbjct: 206 ---LSRNNLTVSRIKQIYYTVESRDKVD---------LTIQLLQLHKTSGTMIFCNTKK- 252
Query: 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLAR 185
+D + T+ ++ D+K + R+ ++ F++ + +++A+D AR
Sbjct: 253 ---------MVDELTTQLNKAGFPALGLHGDMKQEMRSMVMSRFKKGMVSVLIATDVAAR 303
Query: 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
GIDV+++DVVINY+ P ++ Y+HRIGRT R G++G ++TLV+
Sbjct: 304 GIDVDSMDVVINYDIPQELEYYVHRIGRTGRAGKEGLAITLVS 346
>gi|424925048|ref|ZP_18348409.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404306208|gb|EJZ60170.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S D L AG P S E N
Sbjct: 171 NIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 214 VAANTVKQW---------VVTVDKKRKPELFVHLMRKNKWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADE 352
>gi|359782600|ref|ZP_09285820.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
gi|359369420|gb|EHK69991.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
psychrotolerans L19]
Length = 630
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+R Q LLFSAT S D + + AG P E N
Sbjct: 181 PARRQNLLFSATFSKD-----------------ITDLAGKLLQDPERIEVTPPN------ 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + ++L N K +L LI A + VL F T GA+RLA L+
Sbjct: 218 ---TTVERIEQRLFRIPANQKRALLAHLITLGAWEQVLVFTRTKHGANRLAEYLNK---- 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + + R K + +F+ ++ ++VA+D ARG+D++ + V+N+E
Sbjct: 271 ------HGLPAAPIHGNKSQNARTKALADFKSNEVRVLVATDIAARGLDIDQLPHVVNFE 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R GR G +++LV+ E
Sbjct: 325 LPNVEEDYVHRIGRTGRAGRSGEAISLVSPDE 356
>gi|375109850|ref|ZP_09756089.1| ATP-dependent RNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570019|gb|EHR41163.1| ATP-dependent RNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 416
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + L + L +P L +V P T + I
Sbjct: 180 PPKRQNLLFSATFSEEIRTLAKGLLHEP-LEVTVTPPNSTVER----------------I 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K NL L Q I+ H Q VL F T GA++L LL
Sbjct: 223 EQWLYPVDKGQK-----ANL----LIQQIKAHNWQQVLVFTKTKHGANKLTLLLEKAGIS 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K + R K + EF+ I ++VA+D ARG+D++ + V+NYE
Sbjct: 274 AMAIHGNKSQ----------NARTKALAEFKAGGIRVLVATDIAARGLDIQQLPQVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 324 LPNVAEDYVHRIGRTGRAGAAGLAVSLVCAEE 355
>gi|397644308|gb|EJK76339.1| hypothetical protein THAOC_01902 [Thalassiosira oceanica]
Length = 476
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 26 LLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTT 84
+LFSAT++ EKL + SL P ++ S KF T
Sbjct: 236 MLFSATMTSKVEKLQRASLVDPVRVEVST---------------------------KFQT 268
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P +L + K L LI +HA Q +L F T RLA +L ++ A
Sbjct: 269 PKKLLQSYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAIC-- 326
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
++ + +R + +F+ D+++ +D +RG+D+ ++DVVIN++ P +
Sbjct: 327 --------LHGQMSQPKRLGALTKFKAGGRDIMICTDVASRGLDIPSVDVVINFDLPGHG 378
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K YIHR+GRTAR GR G ++ +VT ++
Sbjct: 379 KDYIHRVGRTARAGRSGKAIAMVTQYD 405
>gi|50551911|ref|XP_503430.1| YALI0E01782p [Yarrowia lipolytica]
gi|74634065|sp|Q6C7D2.1|HAS1_YARLI RecName: Full=ATP-dependent RNA helicase HAS1
gi|49649299|emb|CAG79009.1| YALI0E01782p [Yarrowia lipolytica CLIB122]
Length = 605
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
M + P Q +LFSAT + E L ++SL + L+ +V D SS A
Sbjct: 299 MKEIIKILPKERQSMLFSATQTTKVEDLARISLKKGPLYLNV-------DEHNVSSTA-- 349
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
+ L G++ C ++ + L+L+ ++++A + ++ F+++
Sbjct: 350 EGLEQGYV--------------VCDSDKRFLLLFSFLKRNAGKKIIVFLSSCNSVKFYGE 395
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL++ID + + +++ K +R EF K +++ +D ARG+D+
Sbjct: 396 LLNYID----------LPVLDLHGKQKQQKRTNTFFEFINAKQGVLICTDVAARGLDIPK 445
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D +I ++ PD+ + YIHR+GRTARG G S+ +T E
Sbjct: 446 VDWIIQFDPPDDPRDYIHRVGRTARGSASGKSIMFLTPSE 485
>gi|388468703|ref|ZP_10142913.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
gi|388012283|gb|EIK73470.1| putative ATP-dependent RNA helicase [Pseudomonas synxantha BG33R]
Length = 444
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S D L AG P S E N
Sbjct: 171 NIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ P + K P + L+RK + VL F T G
Sbjct: 214 VAANTVKQWVVPVDKKRK---------PELFVHLMRKGRWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDALVDKLQGLGINADGIHGDKPQATRQRALDRFKTSEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADE 352
>gi|317485703|ref|ZP_07944574.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
gi|316923068|gb|EFV44283.1| DEAD/DEAH box helicase [Bilophila wadsworthia 3_1_6]
Length = 594
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ QR+LFSAT+ +L + L +P++ T
Sbjct: 174 PADCQRVLFSATMPQPIRELSKRFLREPEMLT---------------------------- 205
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
++ K+ T + +Y +R + LC V +QG + +
Sbjct: 206 --------IAHKMLTVPAIEQ---VYYEVRPYQKMDALCRVLDSQGFRKALVFCATKRSV 254
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D + ++ D+ QR++++ FR I+++VA+D ARGIDV+++D VI
Sbjct: 255 DEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAARGIDVDDVDAVI 314
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +++ Y+HRIGRT R GR+G + T VT E
Sbjct: 315 NYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVRE 349
>gi|66812836|ref|XP_640597.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
gi|74897154|sp|Q54TJ4.1|DDX27_DICDI RecName: Full=Probable ATP-dependent RNA helicase ddx27; AltName:
Full=DEAD box protein 27
gi|60468614|gb|EAL66617.1| hypothetical protein DDB_G0281711 [Dictyostelium discoideum AX4]
Length = 783
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 109/215 (50%), Gaps = 34/215 (15%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+ P+ Q +LFSATL+ + + L +LSL QP + Q TS+ L
Sbjct: 363 SCPTNRQTMLFSATLNDEVKTLAKLSLQQP------IRVQVDALMQVTST------LEQE 410
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQ-GVLCFVNTAQGAHRLARLLHHI 136
F+ P LS+ +P +L L + Q G + F + + HRL R++ +
Sbjct: 411 FVK--IKPQHLSD---------RPAILLSLCTRVFNQGGTIIFCRSKKEVHRL-RIIFGL 458
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ + AE++ +L +QR +Q+FR +++ ++ASD +RG+D+ + VI
Sbjct: 459 SD---------LKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVI 509
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY P+N+ YIHR+GRTAR G G S + +T ++
Sbjct: 510 NYNMPNNMANYIHRVGRTARAGMDGKSCSFITDND 544
>gi|423331449|ref|ZP_17309233.1| hypothetical protein HMPREF1075_01246 [Parabacteroides distasonis
CL03T12C09]
gi|423340346|ref|ZP_17318085.1| hypothetical protein HMPREF1059_04010 [Parabacteroides distasonis
CL09T03C24]
gi|409227781|gb|EKN20677.1| hypothetical protein HMPREF1059_04010 [Parabacteroides distasonis
CL09T03C24]
gi|409230332|gb|EKN23197.1| hypothetical protein HMPREF1075_01246 [Parabacteroides distasonis
CL03T12C09]
Length = 466
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 257 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 308
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 309 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 366
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 367 EDYVHRIGRTARGTNGEGLAITFVSIDE 394
>gi|385303016|gb|EIF47118.1| nucleolar dead-box protein required for synthesis of 60s ribosomal
subunits [Dekkera bruxellensis AWRI1499]
Length = 410
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 37/211 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT++ + L QLSL +P +++P P ++ +SG +
Sbjct: 141 PQKRQTMLFSATMNSNISDLIQLSLQKPARI--MIDP-------PKAA-------ASGLL 184
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHI 136
+F LKP +LY ++ K + ++ FV T AHRL ++ +
Sbjct: 185 QEFVR--------IRKRDGLKPALLYDVLAKLXSNNQSRIIVFVATKTLAHRLRIVMGLL 236
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ + E++ L +QR I F++ + +++ +D +RG+D+ I+VVI
Sbjct: 237 G----------LKVXELHGALSQEQRLDSITAFKKLTVPILICTDLASRGLDIPKIEVVI 286
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P N + Y+HR+GRTAR GR G S++ V
Sbjct: 287 NYDMPKNHEIYLHRVGRTARAGRXGKSISFV 317
>gi|340786226|ref|YP_004751691.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
gi|340551493|gb|AEK60868.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331]
Length = 506
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 36/207 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSAT S + +KL L P +E A S A ADN++
Sbjct: 207 PKERQNLMFSATFSGEIKKLAATFLKNP----VTIEVA--------RSNATADNVT---- 250
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + + K + +IR+ ++ V+ F NT GA +LAR H++N
Sbjct: 251 ----------QTMYHVNEQTKAEAVSYIIRERNLKQVIVFSNTKIGASKLAR---HLEN- 296
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+N + ++ D ++R ++ F+R +I+++VA+D ARG+D+ + VIN++
Sbjct: 297 ------EGVNASAIHGDKTQNERMAALEAFKRGEIEVLVATDVAARGLDIAELPCVINFD 350
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTL 226
P N + Y+HRIGRT R G G +++L
Sbjct: 351 LPYNAEDYVHRIGRTGRAGASGDAISL 377
>gi|300783035|ref|YP_003763326.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|384146259|ref|YP_005529075.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|399534921|ref|YP_006547583.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|299792549|gb|ADJ42924.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei U32]
gi|340524413|gb|AEK39618.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
gi|398315691|gb|AFO74638.1| ATP-dependent RNA helicase [Amycolatopsis mediterranei S699]
Length = 598
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP V+ ++++ + F T + A ++A D++ +G A V+ DL
Sbjct: 302 KPEVIARVLQAEDRGLTMIFSRTKRTAQKVA------DDLVERG----FAAAAVHGDLGQ 351
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + ++ FR K+D++VA+D ARGID++++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 352 GAREQALRAFRSGKVDVLVATDVAARGIDIDDVTHVINYQCPDDEKTYVHRIGRTGRAGR 411
Query: 220 QGTSVTLVTTHE 231
G +VTLV E
Sbjct: 412 TGVAVTLVDWDE 423
>gi|377563687|ref|ZP_09793026.1| putative ATP-dependent RNA helicase [Gordonia sputi NBRC 100414]
gi|377529134|dbj|GAB38191.1| putative ATP-dependent RNA helicase [Gordonia sputi NBRC 100414]
Length = 538
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 263 KAELVARILQADGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 312
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR +ID++VA+D ARGID++++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 313 VAREKALKKFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGR 372
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 373 TGIAITLVDWDE 384
>gi|403048765|ref|ZP_10903249.1| superfamily II DNA/RNA helicase [SAR86 cluster bacterium SAR86D]
Length = 330
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 100/214 (46%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q L+F+AT S+ L + + +E + T D +EAG + I
Sbjct: 100 PERRQNLMFTATFSNSFRSLAR------DMADKAIEVSVTND-----NEAGEN------I 142
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID-- 137
+ P + S K +L +LI L F T GA RL + L +D
Sbjct: 143 EHYVHPVDKSRKAE---------LLIELIETQKWDQALVFTRTKHGADRLQKQLDKVDIK 193
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ A G T+ N R K + F+ +I ++VA+D ARGID++ + VIN
Sbjct: 194 SKAIHGNKTQNN------------RMKALDAFKNNRIKILVATDVAARGIDIKKMSQVIN 241
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ P K YIHRIGRT RGG +G ++TLV+ E
Sbjct: 242 FDVPTVAKDYIHRIGRTGRGGDKGKAITLVSADE 275
>gi|398954425|ref|ZP_10675961.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398152444|gb|EJM40963.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|18645108|gb|AAL76409.1| ATP-dependent RNA helicase RhlE [uncultured marine proteobacterium]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S D L + + P VE + T P +S
Sbjct: 185 PKKRQNLMFSATFSEDIRDLAKTIVNNP------VEISVT----PRNS------------ 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + N K +L +LI +H + VL F T +GA+RLA L D
Sbjct: 223 ----TAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKD-- 276
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R + + EF+ K+ ++VA+D ARG+D+E + V+N +
Sbjct: 277 --------IQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDIEQLPQVVNLD 328
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV+ E
Sbjct: 329 LPEVAQDYVHRIGRTGRAGATGQAISLVSADE 360
>gi|410103883|ref|ZP_11298803.1| hypothetical protein HMPREF0999_02575 [Parabacteroides sp. D25]
gi|409235786|gb|EKN28597.1| hypothetical protein HMPREF0999_02575 [Parabacteroides sp. D25]
Length = 466
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L L + Q V+ F ++ LA L +
Sbjct: 257 PESIMQTAYICYDPQKLKILQDLFTQSRPQRVIIFSSSKMKVKELASTLKRL-------- 308
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
K N+A ++SDL+ QR ++++EF+ ID++VA+D +ARGID+ +I +V+N++ P +
Sbjct: 309 --KFNVAAMHSDLEQSQREEVMKEFKSGHIDILVATDVVARGIDINDIKLVVNFDIPHDP 366
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 367 EDYVHRIGRTARGTNGEGLAITFVSIDE 394
>gi|395789518|ref|ZP_10469037.1| hypothetical protein ME9_00754 [Bartonella taylorii 8TBB]
gi|395429855|gb|EJF95911.1| hypothetical protein ME9_00754 [Bartonella taylorii 8TBB]
Length = 436
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT AE+++KL T+ K VL +L+ A+ V+ F T GA + R L I
Sbjct: 197 TTVAEITQKLYCVPTSEKKNVLGKLLTNPALTSVIVFTRTKHGADAVTRTLTKIG----- 251
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
++A ++ + R ++ FR R + ++VA+D ARGIDV I VINY+ PD
Sbjct: 252 -----YSVATIHGNKSQSARQSALKAFRERAVRILVATDIAARGIDVLGISHVINYDLPD 306
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 307 EAESYVHRIGRTGRNGASGEALTL 330
>gi|392394099|ref|YP_006430701.1| DNA/RNA helicase [Desulfitobacterium dehalogenans ATCC 51507]
gi|390525177|gb|AFM00908.1| DNA/RNA helicase, superfamily II [Desulfitobacterium dehalogenans
ATCC 51507]
Length = 530
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 38/226 (16%)
Query: 8 GLVIMWDTFLTYPSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G V +T L R +R +LFSAT+ + +KL Q + QPK
Sbjct: 165 GFVEDIETILKQVPREERQVMLFSATMPPEIKKLAQNYMSQPK----------------- 207
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQG 125
S D L+ I + A +K L ++I + + F T +G
Sbjct: 208 SVAVSRDELTVPLIEQVFYEAR---------DKIKVDALCRIIDMEDIGQAIIFCRTKRG 258
Query: 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLAR 185
L L A ++ DL QR++++++FR K++L+VA+D AR
Sbjct: 259 VDELVAALEARGYFADA----------LHGDLSQQQRDRVMKKFRDGKVELLVATDVAAR 308
Query: 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
G+D++N+ VIN++ P + + Y+HRIGRT R GR+G ++TL+++ E
Sbjct: 309 GLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLISSRE 354
>gi|375256324|ref|YP_005015491.1| putative DEAD-box ATP-dependent RNA helicase CshA [Tannerella
forsythia ATCC 43037]
gi|363408757|gb|AEW22443.1| putative DEAD-box ATP-dependent RNA helicase CshA [Tannerella
forsythia ATCC 43037]
Length = 437
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
PA + + C K ++ QL K + V+ F ++ L L +
Sbjct: 216 PASIMQTAYICYEAHKMPIIKQLFSKKQPERVIIFSSSKMKVKELTAALKRL-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
N+A ++SDL+ +R ++++EFR +I ++VA+D +ARGID+ +I +VINY+ P++
Sbjct: 268 --HFNVAAMHSDLEQSEREQVMKEFRNGRIGVLVATDVVARGIDINDITLVINYDIPNDP 325
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARG +G ++T V+ E
Sbjct: 326 EDYVHRIGRTARGTDGKGLAITFVSQQE 353
>gi|294911908|ref|XP_002778095.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239886216|gb|EER09890.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+ P Q LFSAT+++ +L + SL T+P E
Sbjct: 202 SCPRDRQTFLFSATMTNKVSQLQRASL-----------------TRPVKCEVAR------ 238
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
KF L + K L L+ + V+ FV+T A R+A L H+
Sbjct: 239 ---KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHLG 295
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ N ++ + R + +FR ++VA+D ARG+D+ ++DVVIN
Sbjct: 296 H----------NCVCLHGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVIN 345
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ P N ++YIHR+GRTAR GR G SVTLVT ++
Sbjct: 346 FDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYD 379
>gi|398931338|ref|ZP_10665140.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398163790|gb|EJM51940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|319407442|emb|CBI81093.1| ATP-dependent RNA helicase [Bartonella sp. 1-1C]
Length = 415
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT AE+++ L ST+ K +L +L+ A+ V+ F+ T GA +AR L TK
Sbjct: 220 TTAAEITQVLYCVSTSEKKSILSKLLTNPALTSVIVFIRTKHGADSVARSL-------TK 272
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
++A ++ + + R ++ FR + ++VA+D ARGID+ I VINY+ PD
Sbjct: 273 AG---YSVATIHGNKSQNARQCALKNFREGLVRVLVATDIAARGIDIPGISHVINYDLPD 329
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
N + Y+HRIGRT R G G ++T
Sbjct: 330 NAESYVHRIGRTGRNGASGDAITF 353
>gi|301632114|ref|XP_002945136.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Xenopus
(Silurana) tropicalis]
Length = 411
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 83/148 (56%), Gaps = 10/148 (6%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + + ++ + + + K ++Q+++ ++ FVN+ G RLAR L
Sbjct: 158 TASTVEQRFYSANDDDKRRAIHQVLKTRGLKQAFVFVNSKLGCARLARSLER-------- 209
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ A ++ D D+R K ++ F++ ++DL+V +D ARG+D++++ V N++ P N
Sbjct: 210 --EGLKTAALHGDKSQDERLKALEAFKQGEVDLLVCTDVAARGLDIKDVPAVFNFDVPFN 267
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRT R G G +VTLV+ +
Sbjct: 268 AEDYVHRIGRTGRAGAAGLAVTLVSNSD 295
>gi|407712738|ref|YP_006833303.1| DEAD/DEAH box helicase [Burkholderia phenoliruptrix BR3459a]
gi|407234922|gb|AFT85121.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
phenoliruptrix BR3459a]
Length = 512
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 216 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 252
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ ++ V+ F N+ GA RLAR L V
Sbjct: 253 ---STATNVTQIVYEVAEGDKTGAVVQLIRERNLKQVIVFCNSKIGASRLARSLERDGVV 309
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 310 ATA----------IHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 359
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 360 LPFNAEDYVHRIGRTGRAGASGDALSLFSPNE 391
>gi|345889425|ref|ZP_08840430.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
gi|345039614|gb|EGW43936.1| hypothetical protein HMPREF0178_03204 [Bilophila sp. 4_1_30]
Length = 594
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 42/215 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ QR+LFSAT+ +L + L +P++ T
Sbjct: 174 PADCQRVLFSATMPQPIRELSKRFLREPEMLT---------------------------- 205
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHI 136
++ K+ T + +Y +R + LC V +QG + +
Sbjct: 206 --------IAHKMLTVPAIEQ---VYYEVRPYQKMDALCRVLDSQGFRKALVFCATKRSV 254
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D + ++ D+ QR++++ FR I+++VA+D ARGIDV+++D VI
Sbjct: 255 DEITVHLQQRGYQADGLHGDMNQTQRDRVMSRFRTDGIEILVATDVAARGIDVDDVDAVI 314
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P +++ Y+HRIGRT R GR+G + T VT E
Sbjct: 315 NYDIPHDVEGYVHRIGRTGRAGREGKAFTFVTVRE 349
>gi|398803769|ref|ZP_10562787.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
gi|398096022|gb|EJL86353.1| DNA/RNA helicase, superfamily II [Polaromonas sp. CF318]
Length = 481
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 81/149 (54%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
T + + + + + K L+Q++++ M+ FVN+ G RLAR L
Sbjct: 219 ATASTVEQHFYSVGADDKRRALHQILKERGMKQAFVFVNSKLGCARLARSLER------- 271
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ A ++ D D+R K ++ F++ ++DL+V +D ARG+D++++ V N++ P
Sbjct: 272 ---EGLKTAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARGLDIKDVPAVFNFDVPF 328
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N + Y+HRIGRT R G G +V+ V + +
Sbjct: 329 NAEDYVHRIGRTGRAGASGLAVSFVASSD 357
>gi|323525320|ref|YP_004227473.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323382322|gb|ADX54413.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. CCGE1001]
Length = 486
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + QLIR+ ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STATNVTQIVYEVAEGDKTGAVVQLIRERNLKQVIVFCNSKIGASRLARSLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLFSPNE 365
>gi|156841974|ref|XP_001644357.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114998|gb|EDO16499.1| hypothetical protein Kpol_513p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 501
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 106/209 (50%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL + LF +VV T + AD L G++
Sbjct: 218 QSMLFSATQTTKVEDLARISLRKGPLFINVVTERDT---------STADGLEQGYV---- 264
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 265 ----------VCESDKRFLLLFSFLKRNQKKKIIVFLSSCNSVRYYAELLNYID------ 308
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + ++V +D ARG+D+ +D +I ++ PD+
Sbjct: 309 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILVCTDVAARGLDIPAVDWIIQFDPPDD 364
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T +E
Sbjct: 365 PRDYIHRVGRTARGTKGKGKSLMFLTPNE 393
>gi|431795901|ref|YP_007222805.1| DNA/RNA helicase [Echinicola vietnamensis DSM 17526]
gi|430786666|gb|AGA76795.1| DNA/RNA helicase, superfamily II [Echinicola vietnamensis DSM
17526]
Length = 416
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q L FSAT+ P+ + QLS +++ + P SS
Sbjct: 182 QSLFFSATM---PDNILQLS-------KEILDNPQKVEVTPVSS---------------- 215
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + + + + + K +L ++ K M VL F T GA R+ R L
Sbjct: 216 TAETIQQYIYYTNKSSKKSLLIHILEKEGMDQVLLFSRTKHGADRIVRDLKK-------- 267
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ A ++ D +QR +++ +F+ K+ ++VA+D ARGID++ + VIN++ PD
Sbjct: 268 --KHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLVATDIAARGIDIDKLKYVINFDIPDT 325
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGR+ R G +GT+++L E
Sbjct: 326 PETYIHRIGRSGRAGEEGTAISLCEPEE 353
>gi|419964790|ref|ZP_14480743.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
gi|414569902|gb|EKT80642.1| cold-shock DEAD-box protein [Rhodococcus opacus M213]
Length = 544
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 277 KAEMVARVLQADGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGSVHGDLNQ 326
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 327 VAREKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 386
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 387 TGIAVTLV 394
>gi|398964629|ref|ZP_10680406.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398148015|gb|EJM36703.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 212 RNVAANTVKQW---------VVTVDKKRKPELFVHLMRKNKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGATGEAISLVCADE 352
>gi|426411630|ref|YP_007031729.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
gi|426269847|gb|AFY21924.1| ATP-dependent RNA helicase [Pseudomonas sp. UW4]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|377561113|ref|ZP_09790578.1| putative ATP-dependent RNA helicase [Gordonia otitidis NBRC 100426]
gi|377521674|dbj|GAB35743.1| putative ATP-dependent RNA helicase [Gordonia otitidis NBRC 100426]
Length = 546
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 263 KAELVARILQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 312
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR ID++VA+D ARGID++++ VINY+ PD+ K Y+HRIGRT R GR
Sbjct: 313 VAREKALKKFRSGDIDVLVATDVAARGIDIDDVTHVINYQCPDDDKTYVHRIGRTGRAGR 372
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 373 TGIAITLVDWDE 384
>gi|432334488|ref|ZP_19586164.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
gi|430778572|gb|ELB93819.1| cold-shock DEAD-box protein [Rhodococcus wratislaviensis IFP 2016]
Length = 544
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 277 KAEMVARVLQADGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGSVHGDLNQ 326
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 327 VAREKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 386
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 387 TGIAVTLV 394
>gi|395645907|ref|ZP_10433767.1| DEAD/DEAH box helicase domain protein [Methanofollis liminatans DSM
4140]
gi|395442647|gb|EJG07404.1| DEAD/DEAH box helicase domain protein [Methanofollis liminatans DSM
4140]
Length = 530
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 15/118 (12%)
Query: 129 LARLLHHID-NVATKGAGTKMNIAEVYS--------------DLKFDQRNKIIQEFRRRK 173
L+R+L D +A TKM + EV S D+K QR++++ +FR
Sbjct: 235 LSRILDIYDPALALVFCNTKMAVDEVTSQLQARGYFAEGLHGDMKQVQRDRVMAKFRSGN 294
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ID+++A+D ARGIDV+++D VINY+ P +++ Y+HRIGRTAR GR G +VT V E
Sbjct: 295 IDVLIATDVAARGIDVDDVDTVINYDVPQDVEYYVHRIGRTARAGRSGRAVTFVGPKE 352
>gi|313682743|ref|YP_004060481.1| dead/deah box helicase domain-containing protein [Sulfuricurvum
kujiense DSM 16994]
gi|313155603|gb|ADR34281.1| DEAD/DEAH box helicase domain protein [Sulfuricurvum kujiense DSM
16994]
Length = 431
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S D + L A T P E N SS +
Sbjct: 177 PKVRQNLLFSATYSDDIKTL-----------------ANTLLRNPAEVEVARRNTSSELV 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ S L C K +L +LI KH + VL F T GA++L L I
Sbjct: 220 KQ-------SVILVDCKR--KSSLLGELIGKHKWEQVLVFTRTKHGANKLTEYLQKIGIT 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + +F+R + ++VA+D ARGID++ + V+N+E
Sbjct: 271 AAAIHGNKSQSA----------RTKALDDFKRSSVRVLVATDIAARGIDIDALPHVVNFE 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +G +++LV E
Sbjct: 321 LPNIAEDYVHRIGRTGRAGCEGEALSLVCVDE 352
>gi|254509500|ref|ZP_05121567.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
gi|221533211|gb|EEE36199.1| dead/deah box helicase domain protein [Rhodobacteraceae bacterium
KLH11]
Length = 419
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 40/210 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG--FIGK 81
Q +LFSAT+ E+L + L P+ V P G AD ++ F+ K
Sbjct: 182 QTMLFSATMPKQMEELSRAYLTNPQRVQ--VSPPGKA----------ADKITQSIHFVEK 229
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA+L E L+ L L F T GA +L + L
Sbjct: 230 PAKPAKLREILSADMDAL----------------TLVFSRTKHGAEKLMKGL-------- 265
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
N A ++ + QR++ I+ FR +I+++VA+D ARGID+ + VINY+ P
Sbjct: 266 --VADGYNAASIHGNKSQGQRDRAIKAFRAGEINILVATDVAARGIDIPGVAYVINYDLP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRTAR GR+G ++ + E
Sbjct: 324 EVPDNYVHRIGRTARAGREGEAIAFCSAEE 353
>gi|398910036|ref|ZP_10654849.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398186868|gb|EJM74228.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 446
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|359795873|ref|ZP_09298486.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
gi|359366192|gb|EHK67876.1| putative ATP-dependent RNA helicase [Achromobacter arsenitoxydans
SY8]
Length = 466
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S++ KL + L P E A N ++
Sbjct: 173 PAQRQGLLFSATFSNEIRKLGRSYL-----------------NHPVEIEVAARNATA--- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT +++ K+T+ + K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 213 ---TTITQIAYKMTS---DAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARDLER-DGV 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ +++++VA+D ARG+DV + VINY+
Sbjct: 266 KAE---------SIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYD 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 317 LPYNSEDYVHRIGRTGRAGASGEAIALFTADE 348
>gi|336322978|ref|YP_004602945.1| DEAD/DEAH box helicase [Flexistipes sinusarabici DSM 4947]
gi|336106559|gb|AEI14377.1| DEAD/DEAH box helicase domain protein [Flexistipes sinusarabici DSM
4947]
Length = 527
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 7/162 (4%)
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---L 129
N++ F+G+F SE+L T +Y +R+ LC + +
Sbjct: 195 NIAKRFMGEFEIFRTKSEELAAGLTEQ----IYFEVREPDKFEALCRIRDMEKEFYGIIF 250
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
R +D +A + N ++ D+ QR +I+++FR ++++++VA+D ARGID+
Sbjct: 251 CRTKVDVDKLANRLIDRGYNAEALHGDISQHQRERILKKFRNKQVNMLVATDVAARGIDI 310
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++ VINY P + + YIHRIGRT R G++GT++T VT E
Sbjct: 311 QDLTHVINYALPQDPEAYIHRIGRTGRAGKEGTAITFVTPEE 352
>gi|294942246|ref|XP_002783449.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239895904|gb|EER15245.1| DEAD box RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 463
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+ P Q LFSAT+++ +L + SL T+P E
Sbjct: 202 SCPRDRQTFLFSATMTNKVSQLQRASL-----------------TRPVKCEVAR------ 238
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
KF L + K L L+ + V+ FV+T A R+A L H+
Sbjct: 239 ---KFDVAKGLVQNYMFVPHKHKHAYLAALLAHFKLSTVMIFVDTCLNAQRMATTLRHLG 295
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ N ++ + R + +FR ++VA+D ARG+D+ ++DVVIN
Sbjct: 296 H----------NCVCLHGKMTQTHRLGALNQFRAGTRSVLVATDVAARGLDIPSVDVVIN 345
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ P N ++YIHR+GRTAR GR G SVTLVT ++
Sbjct: 346 FDVPKNPEEYIHRVGRTARAGRTGRSVTLVTQYD 379
>gi|387895769|ref|YP_006326066.1| ATP-dependent RNA helicase [Pseudomonas fluorescens A506]
gi|387161796|gb|AFJ56995.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens A506]
Length = 444
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ P + K P + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQWVVPVDKKRK---------PELFVHLMRKGRWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADE 352
>gi|329847732|ref|ZP_08262760.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
gi|328842795|gb|EGF92364.1| putative ATP-dependent RNA helicase rhlE [Asticcacaulis
biprosthecum C19]
Length = 606
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT +S+++ K +L ++ ++ L F T + A R+A L
Sbjct: 215 TTAERVSQQVLFIEAQRKRALLSEMYADAVLERTLVFTRTKRSADRVAAYLQ-------- 266
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG + A ++ D QR + +Q FR K+ +VA+D ARGIDV+N+ VINYE P+
Sbjct: 267 -AGG-VEAAAIHGDKNQSQRERALQAFRAGKVRALVATDIAARGIDVDNVSHVINYELPN 324
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRTAR G+ G S+TL E
Sbjct: 325 VAEAYVHRIGRTARAGKSGVSITLCADDE 353
>gi|72392369|ref|XP_846985.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62359340|gb|AAX79779.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei]
gi|70803015|gb|AAZ12919.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261330174|emb|CBH13158.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 569
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 34/205 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q L+FSAT P+++ L+ + F V G+++L +
Sbjct: 255 QTLMFSATW---PQEIRNLAASFQRDFIRV--------------HVGSEDLIAN------ 291
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
A++++ ++ K L ++++K Q VL FV T R A LHH G
Sbjct: 292 --ADVTQHVSVVEDYDKQRRLEEILQKVGKQRVLIFVKT----KRTADSLHHSLQRLIGG 345
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + ++ D + QR+ ++ FRR + ++VA+D ARG+D++N+DVVIN++ P N
Sbjct: 346 S-----VMAIHGDKEQSQRDYVLDRFRRDERSVLVATDVAARGLDIKNLDVVINFDMPTN 400
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVT 228
I+ Y+HRIGRT R G++G + T V+
Sbjct: 401 IEDYVHRIGRTGRAGQRGDAYTFVS 425
>gi|398896410|ref|ZP_10647539.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398178670|gb|EJM66315.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
Length = 445
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYKALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|406992528|gb|EKE11874.1| DEAD/DEAH box helicase-like protein [uncultured bacterium]
Length = 416
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 103/204 (50%), Gaps = 36/204 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSATLS + E L Q P + TQ TS++ D + G
Sbjct: 248 QTLLFSATLSKEIEALVQQFQTDPVRISI--------KTQETSAQVDQDIVRVG------ 293
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
+ +K+ +L +L+ + + Q +L F T +GA +L+++L +
Sbjct: 294 ---KDEDKVN---------ILQKLLAQTSFQKILIFTRTKRGAEKLSKILLQM------- 334
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G K ++ D QR + +Q F+ K++++VA+D ARG+D+ N+ VIN++ P +
Sbjct: 335 -GFKSE--SIHGDKSHHQRQRALQSFKNNKVEILVATDVAARGLDIPNVSHVINFDVPAS 391
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
+ YIHRIGRT R G+ G ++T +
Sbjct: 392 YEDYIHRIGRTGRAGKTGIALTFI 415
>gi|448116165|ref|XP_004202989.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
gi|359383857|emb|CCE79773.1| Piso0_001861 [Millerozyma farinosa CBS 7064]
Length = 615
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 109/215 (50%), Gaps = 24/215 (11%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F + + Q+L+FSATL+ D K+ L L +P+L D + +E
Sbjct: 363 FDHWKLKTQKLIFSATLTTDAGKIAGLQLQKPRLVI-------VNDKEQMVNEM------ 409
Query: 76 SGFIGKFTTPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLAR 131
F+ P L E ++ +++KPL+L + L + VL F + + + RLA+
Sbjct: 410 ------FSVPPNLLEYKIQVGAAKSSIKPLILARYLFQSGKTSNVLIFAKSNEASIRLAK 463
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL + N + T + ++ R K +++F +KI ++VA+D +ARGID+ +
Sbjct: 464 LLQILMNSLSSSHQTSVAYLNSTNN-STSVRQKTLKDFSTQKIGILVATDLIARGIDILS 522
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
I V+NY+ P + ++Y+HR+GRTAR G + T
Sbjct: 523 ITDVVNYDLPISAREYVHRVGRTARANNHGNAYTF 557
>gi|385203300|ref|ZP_10030170.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
gi|385183191|gb|EIF32465.1| DNA/RNA helicase, superfamily II [Burkholderia sp. Ch1-1]
Length = 491
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N ++ +
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRDPQTIEVARSNSTATNV 232
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ E++E T + + QLIR+ ++ V+ F N+ GA RLAR L +
Sbjct: 233 RQIVY--EVAEGDKTGA-------VVQLIRERGLKQVIVFCNSKIGASRLARSLERDGVI 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|374635240|ref|ZP_09706843.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
gi|373562963|gb|EHP89166.1| DEAD/DEAH box helicase domain protein [Methanotorris formicicus
Mc-S-70]
Length = 449
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 5/161 (3%)
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL--A 130
NL+ ++G++ +S K T +TNL + Y++ + ++ + L
Sbjct: 191 NLAKRYMGEYKL---VSVKKETLTTNLVEQIYYEVSNSKKFDALCRVIDVEDDFYGLVFC 247
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+ ++ VA K ++ D+ QR +I+ +F++++I+++VA+D ARGID+
Sbjct: 248 KTRADVNEVANKLVENGYEADALHGDIAQKQRERILNKFKKKRINILVATDVAARGIDIN 307
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ VINY P N + Y+HRIGRT R G++GT++T ++ E
Sbjct: 308 NLTHVINYSLPQNPESYVHRIGRTGRAGKKGTAITFISPDE 348
>gi|302306296|ref|NP_982501.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|442570013|sp|Q75EW9.2|RRP3_ASHGO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|299788450|gb|AAS50325.2| AAL041Cp [Ashbya gossypii ATCC 10895]
gi|374105700|gb|AEY94611.1| FAAL041Cp [Ashbya gossypii FDAG1]
Length = 486
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 246 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 279
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R++ L + ++ AT
Sbjct: 280 TLVQTLIVVPGGLKNTFLIYLLNEFIGKTTIVFTRTKANAERISGLCNLLEFSATA---- 335
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 336 ------LHGDLNQNQRTGALDLFKAGKKSILVATDVAARGLDIPSVDLVINYDIPVDSKS 389
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G SV+LV+ ++
Sbjct: 390 YIHRVGRTARAGRSGKSVSLVSQYD 414
>gi|395506879|ref|XP_003757757.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Sarcophilus
harrisii]
Length = 766
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 440 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQAQRLEALRRFKDEQID 489
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 490 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 545
>gi|349578615|dbj|GAA23780.1| K7_Rrp3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 501
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|303231103|ref|ZP_07317843.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429760012|ref|ZP_19292504.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
gi|302514234|gb|EFL56236.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-049-V-Sch6]
gi|429178724|gb|EKY19996.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica KON]
Length = 432
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 36/205 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT+ P+K+ L+ K + T+P S A GK
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYM----------TKPVSVTAE---------GKHI 210
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +++ + K L ++I++ + F N +GA RL+ L
Sbjct: 211 TLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNKREGAIRLSYEL--------TA 262
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+ P +
Sbjct: 263 AG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDVPHD 320
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVT 228
+ YIHRIGRT R G G +VT T
Sbjct: 321 VDYYIHRIGRTGRAGNSGIAVTFAT 345
>gi|146294196|ref|YP_001184620.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|145565886|gb|ABP76821.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 550
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +L + L + VE + T N ++ +
Sbjct: 187 PKQRQNLMFSATFSDEIRELAK------GLVNNPVEISVT-----------PRNAAATTV 229
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K +L QLI++H Q VL F T GA+RLA+ L
Sbjct: 230 KQWVCPVDKGQKAA---------LLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEE---- 276
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG K A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 277 ----AGIKA--AAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVNFD 330
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 331 LPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 362
>gi|323354635|gb|EGA86470.1| Rrp3p [Saccharomyces cerevisiae VL3]
Length = 501
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|410953778|ref|XP_003983547.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Felis catus]
Length = 920
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 589 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 638
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 639 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 694
>gi|398869109|ref|ZP_10624494.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398231623|gb|EJN17609.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 446
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYKALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKLSEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|341902886|gb|EGT58821.1| hypothetical protein CAEBREN_15104 [Caenorhabditis brenneri]
Length = 554
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F + P + Q LL SAT++++ LH++S +P F + AD
Sbjct: 253 FESIPQKRQTLLLSATITNNINMLHKVSTRKPYFF---------------EDKTNADE-- 295
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLAR 131
TT L +K C +K L +++ K+ V+ F T + LA
Sbjct: 296 -------TTVDRLEQKFVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAY 348
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+ G + ++S + QR + FR + + +++ +D +RG+D+ +
Sbjct: 349 MFE----------GLGFRVGSLHSQIAQKQRLAALSAFRSKTLQVIICTDVASRGLDIPH 398
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+V+N+ P K Y+HR+GR+AR GR G++++ VT ++
Sbjct: 399 VDLVVNHNVPQCPKTYVHRVGRSARAGRFGSALSFVTQYD 438
>gi|259146813|emb|CAY80069.1| Rrp3p [Saccharomyces cerevisiae EC1118]
gi|365765178|gb|EHN06690.1| Rrp3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 501
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|428307830|ref|YP_007144655.1| DEAD/DEAH box helicase [Crinalium epipsammum PCC 9333]
gi|428249365|gb|AFZ15145.1| DEAD/DEAH box helicase domain protein [Crinalium epipsammum PCC
9333]
Length = 467
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 72/118 (61%), Gaps = 10/118 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T + A L L + AG ++ E + DL QR +++Q FR+ K
Sbjct: 243 ESAIVFVRTRKAAAELTSQL--------QAAGHSVD--EYHGDLNQSQRERLLQRFRQNK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +VA+D ARG+DV+++ VINY+ PD+++ YIHRIGRT R G+ GT+++L+ E
Sbjct: 293 VRWIVATDIAARGLDVDDLTHVINYDLPDSVENYIHRIGRTGRAGKTGTAISLIQPME 350
>gi|399116636|emb|CCG19443.1| putative ATP-dependent RNA helicase [Taylorella asinigenitalis
14/45]
Length = 444
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PSR Q LL+SAT S + L Q L P T ++N
Sbjct: 183 PSRRQSLLYSATFSDNIRSLAQKFLHDPVEIT-----------------VASNN------ 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T + +++++ + S K L L+ V+ F N L R L+++D
Sbjct: 220 ---STASTITQEIFSVSEAEKNAALLYLLASRNFNNVIIFSNRKITCKNLERYLNNLDLS 276
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K +R K + F+ K +++VA+D ARG+D+ ++D VINYE
Sbjct: 277 AQSLHGDKTQ----------SERTKALNLFKSAKCNILVATDVAARGLDISDVDAVINYE 326
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R GR+G ++++ ++ E
Sbjct: 327 LPPTSEDYVHRIGRTGRAGRKGIAISMYSSDE 358
>gi|374373127|ref|ZP_09630787.1| DEAD/DEAH box helicase domain protein [Niabella soli DSM 19437]
gi|373234100|gb|EHP53893.1| DEAD/DEAH box helicase domain protein [Niabella soli DSM 19437]
Length = 411
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT+ + ++L L QP + +V PA T D
Sbjct: 176 PLQRQTILFSATMPTEIQQLAGTLLSQP-IKITVTPPATTVD------------------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + L KP +L QL++ +Q VL F T GA ++ + L
Sbjct: 217 -------RIQQSLYYTEKRFKPSLLLQLLKDERIQTVLVFARTKHGADKITQNL------ 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
GAG K A ++ + R + F++ I ++VA+D ARGIDV+++ VINYE
Sbjct: 264 --TGAGIKA--AAIHGNKSQSARQTALLNFKKGAIKVLVATDIAARGIDVDHMGHVINYE 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G +G +++ E
Sbjct: 320 LPNEPETYVHRIGRTGRAGAEGIAISFCDYEE 351
>gi|160358662|sp|A6ZSX1.1|RRP3_YEAS7 RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|151944009|gb|EDN62302.1| ribosomal RNA processing protein [Saccharomyces cerevisiae YJM789]
gi|190405848|gb|EDV09115.1| weak RNA-dependent ATPase activity which is not specific for rRNA
[Saccharomyces cerevisiae RM11-1a]
gi|256270568|gb|EEU05749.1| Rrp3p [Saccharomyces cerevisiae JAY291]
gi|323333235|gb|EGA74633.1| Rrp3p [Saccharomyces cerevisiae AWRI796]
Length = 501
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|427382508|ref|ZP_18879228.1| hypothetical protein HMPREF9447_00261 [Bacteroides oleiciplenus YIT
12058]
gi|425729753|gb|EKU92604.1| hypothetical protein HMPREF9447_00261 [Bacteroides oleiciplenus YIT
12058]
Length = 435
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPAEVKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ + + C N K ++ L + + V+ F ++ + + L +
Sbjct: 213 ---SRPADKIVQAAYVCYENQKLGIIRSLFAEQTPERVIIFASSKLKVKEVTKALKLM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR +++ EF+ +I+++VA+D +ARGID+++I +V+NY
Sbjct: 268 --------KLNVGEMHSDLEQAQREEVMHEFKAGRINILVATDIVARGIDIDDIRLVLNY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T + E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFINEKE 352
>gi|441639369|ref|XP_004090206.1| PREDICTED: probable ATP-dependent RNA helicase DDX27, partial
[Nomascus leucogenys]
Length = 786
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 456 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 505
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 506 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 561
>gi|365960392|ref|YP_004941959.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
gi|365737073|gb|AEW86166.1| DEAD-box ATP dependent DNA helicase [Flavobacterium columnare ATCC
49512]
Length = 421
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+ + ++ + L +PK VE T
Sbjct: 178 PQNRQTLLFSATMPIEIREIAEEFLKKPKY----VEVKST-------------------- 213
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
F + + + + K +L ++I++ + + FV T QGA LA L
Sbjct: 214 --FNNSQNIIQSVYFVEKSEKKQLLLRVIKQEKLGNTIIFVRTKQGAENLAEFLRK---- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++N ++ D + R K++++F+ + ID ++A+D +RGID++ + VVINY+
Sbjct: 268 ------NQLNCDALHGDKSQNARQKVLEDFKNKTIDFLIATDVASRGIDIDQLPVVINYD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + YIHRIGRT R G G +++ E
Sbjct: 322 LPNIPETYIHRIGRTGRAGHSGIAISFCGKDE 353
>gi|424851819|ref|ZP_18276216.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
gi|356666484|gb|EHI46555.1| LOW QUALITY PROTEIN: DEAD/DEAH box helicase domain-containing
protein, partial [Rhodococcus opacus PD630]
Length = 526
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 327 KAEMVARVLQADGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGSVHGDLNQ 376
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K ++ FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 377 VAREKALKAFRTGKIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 436
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 437 TGIAVTLV 444
>gi|223999113|ref|XP_002289229.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
gi|220974437|gb|EED92766.1| atp-depedent helicase [Thalassiosira pseudonana CCMP1335]
Length = 435
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 96/206 (46%), Gaps = 36/206 (17%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
+LFSAT++ EKL + SL P + KF TP
Sbjct: 221 MLFSATMTSKVEKLQRASLVDP--------------------------VRVEVSTKFQTP 254
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+L + K L LI +HA Q +L F T RLA +L ++ A
Sbjct: 255 KKLLQNYLFIPAKYKDCYLTYLINEHAGQSILVFGATCNNVQRLALMLRNLGFPAIC--- 311
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ + +R + +F+ D+++ +D +RG+D+ ++DVVIN++ P + K
Sbjct: 312 -------LHGQMSQPKRLGALTKFKSGGRDILICTDVASRGLDIPSVDVVINFDLPGHGK 364
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G ++ +VT ++
Sbjct: 365 DYIHRVGRTARAGRSGKAIAMVTQYD 390
>gi|40063513|gb|AAR38313.1| ATP-dependent RNA helicase RhlE [uncultured marine bacterium 581]
Length = 446
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D L + + P VE + T P +S
Sbjct: 176 PNKRQNLMFSATFSEDIRDLAKTIVNNP------VEISVT----PRNS------------ 213
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + N K +L +LI +H + VL F T +GA+RLA L D
Sbjct: 214 ----TAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLEKKD-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R + + EF+ K+ ++VA+D ARG+D+E + V+N +
Sbjct: 268 --------IQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDIEQLPQVVNLD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV+ E
Sbjct: 320 LPEVAQDYVHRIGRTGRAGATGQAISLVSADE 351
>gi|378718867|ref|YP_005283756.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|375753570|gb|AFA74390.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 553
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 281 KAELVARILQAEGRGATMIFTRTKRAAQKVA------DDLAERG----FSVGAVHGDLGQ 330
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR +ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 331 VAREKALKKFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR 390
Query: 220 QGTSVTLVTTHE 231
G +VTLV E
Sbjct: 391 TGIAVTLVDWDE 402
>gi|323308818|gb|EGA62055.1| Rrp3p [Saccharomyces cerevisiae FostersO]
Length = 501
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|399009866|ref|ZP_10712274.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|398109615|gb|EJL99537.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 444
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 212 RNVAANTVKQW---------VVTVDKKRKPELFSHLLRKNRWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + + G +N ++ D R + + F+ +I ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVERLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|425901734|ref|ZP_18878325.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397892868|gb|EJL09344.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 444
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 100/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 212 RNVAANTVKQW---------VVTVDKKRKPELFSHLLRKNRWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + + G +N ++ D R + + F+ +I ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVERLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|351730076|ref|ZP_08947767.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax
radicis N35]
Length = 498
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 37/222 (16%)
Query: 8 GLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G + L+Y P + LLFSAT S + ++L S Q + V P T T
Sbjct: 169 GFLPDLQRILSYLPKQRTTLLFSATFSPEIKRLAS-SYLQNPITIEVARPNETAST---- 223
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
+ ++ + + + K ++Q+++ ++ FVN+ G
Sbjct: 224 ---------------------VEQRFYSANDDDKRRAIHQVLKTRGLKQAFIFVNSKLGC 262
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
RLAR L + ++ D D+R K ++ F+ ++DL+V +D ARG
Sbjct: 263 ARLARSLER----------EGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARG 312
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+D++++ V N++ P N + Y+HRIGRT R G G +VTLV+
Sbjct: 313 LDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|346994009|ref|ZP_08862081.1| DEAD/DEAH box helicase-like protein [Ruegeria sp. TW15]
Length = 419
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 40/210 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG--FIGK 81
Q +LFSAT+ E+L + L P+ V P G AD ++ F+ K
Sbjct: 182 QTMLFSATMPKQMEELSRAYLTNPQRVQ--VSPPGKA----------ADKITQSIHFVEK 229
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
PA+L E L+ L L F T GA +L + L
Sbjct: 230 PAKPAKLREILSADMDAL----------------TLVFSRTKHGAEKLMKGL-------- 265
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
N A ++ + QR++ I+ FR +I+++VA+D ARGID+ + VINY+ P
Sbjct: 266 --VADGFNAASIHGNKSQGQRDRAIKAFRAGEINVLVATDVAARGIDIPGVAYVINYDLP 323
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRTAR GR+G ++ + E
Sbjct: 324 EVPDNYVHRIGRTARAGREGEAIAFCSAEE 353
>gi|401679589|ref|ZP_10811516.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
gi|400219523|gb|EJO50391.1| DEAD/DEAH box helicase [Veillonella sp. ACP1]
Length = 432
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 36/205 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT+ P+K+ L+ K + T+P S A GK
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYM----------TKPVSVTAE---------GKHI 210
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +++ + K L ++I++ + F N +GA RL+ L
Sbjct: 211 TLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNKREGAIRLSYEL--------TA 262
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+ P +
Sbjct: 263 AG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDVPHD 320
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVT 228
+ YIHRIGRT R G G +VT T
Sbjct: 321 VDYYIHRIGRTGRAGNSGIAVTFAT 345
>gi|303229600|ref|ZP_07316388.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
gi|302515725|gb|EFL57679.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella
atypica ACS-134-V-Col7a]
Length = 432
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 103/205 (50%), Gaps = 36/205 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT+ P+K+ L+ K + T+P S A GK
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYM----------TKPVSVTAE---------GKHI 210
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +++ + K L ++I++ + F N +GA RL+ L
Sbjct: 211 TLDSIDQRVYMMNPEDKTPRLIKMIQEDNPYLAIVFCNKREGAIRLSYEL--------TA 262
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+ P +
Sbjct: 263 AG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDVPHD 320
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVT 228
+ YIHRIGRT R G G +VT T
Sbjct: 321 VDYYIHRIGRTGRAGNSGIAVTFAT 345
>gi|296273966|ref|YP_003656597.1| DEAD/DEAH box helicase [Arcobacter nitrofigilis DSM 7299]
gi|296098140|gb|ADG94090.1| DEAD/DEAH box helicase domain protein [Arcobacter nitrofigilis DSM
7299]
Length = 480
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 104/213 (48%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT S + +KL L +PKL E N SS +
Sbjct: 177 PSHRQNLLFSATFSDEIKKLSDGILNKPKLI-----------------EVARRNTSSEMV 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
S+ + + K +L +LI++ + VL F T GA++L++ L ID +
Sbjct: 220 ---------SQVIHLVDKDRKKTLLSKLIKEGDWRQVLVFTRTKHGANKLSQQLE-IDGI 269
Query: 140 -ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
AT G K A R K + +F+ + ++VA+D ARGID++ + V+N+
Sbjct: 270 TATAIHGNKSQGA----------RTKALADFKAGAVRVLVATDIAARGIDIDQLPHVVNF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
E P+ + Y+HRIGRT R G +G +V+LV E
Sbjct: 320 ELPNVAEDYVHRIGRTGRAGNEGQAVSLVCVDE 352
>gi|167585895|ref|ZP_02378283.1| DEAD/DEAH box helicase domain protein [Burkholderia ubonensis Bu]
Length = 487
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRSRGLKQVIVFCNSKIGASRLARNLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K I +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKTQI----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|406605499|emb|CCH43143.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 740
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 107/209 (51%), Gaps = 35/209 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT++ + L QLSL +P +++P ++G +
Sbjct: 407 PTKRQTLLFSATMNSKIKSLIQLSLKKP--VRIMIDPPKQA--------------ATGLV 450
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM-QGVLCFVNTAQGAHRLARLLHHIDN 138
+F +LKP +L+ +++K Q ++ FV + AH+
Sbjct: 451 QEFVR--------IRKRDHLKPSILFNILKKFTKDQRIVIFVARKEQAHK---------- 492
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ + ++E++ L +QR + I F+ + +++ +D +RG+D+ I+VV+N+
Sbjct: 493 LRIILGLLGLKVSELHGSLTQEQRLQSINNFKTLTVPILICTDLASRGLDIPKIEVVLNF 552
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P N + Y+HR+GRTARGGR+G S++ V
Sbjct: 553 DMPKNFEVYLHRVGRTARGGREGKSISFV 581
>gi|91223036|ref|ZP_01258302.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
gi|91191849|gb|EAS78112.1| ATP-dependent RNA helicase, DEAD box family protein [Vibrio
alginolyticus 12G01]
Length = 412
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T +++E L + K L +LI+K+A L F+ + A LA+ L+
Sbjct: 206 STNQDIAETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKKLNK------- 258
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG N ++ + D+R + + +F+ +I +++A+D LARGI +E + VVIN+E P
Sbjct: 259 -AGISTN--ALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINFELPM 315
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HR+GRTAR G QG +V+LV E
Sbjct: 316 HAETYVHRVGRTARAGEQGVAVSLVCHGE 344
>gi|341882300|gb|EGT38235.1| hypothetical protein CAEBREN_08382 [Caenorhabditis brenneri]
Length = 554
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 102/220 (46%), Gaps = 38/220 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F + P + Q LL SAT++++ LH++S +P F + AD
Sbjct: 251 FESIPQKRQTLLLSATITNNINMLHKVSTRKPYFF---------------EDKTNADE-- 293
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLAR 131
TT L +K C +K L +++ K+ V+ F T + LA
Sbjct: 294 -------TTVDRLEQKFVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAY 346
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+ G + ++S + QR + FR + + +++ +D +RG+D+ +
Sbjct: 347 MFE----------GLGFRVGSLHSQIAQKQRLAALSAFRSKTLQVIICTDVASRGLDIPH 396
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+D+V+N+ P K Y+HR+GR+AR GR G++++ VT ++
Sbjct: 397 VDLVVNHNVPQCPKTYVHRVGRSARAGRFGSALSFVTQYD 436
>gi|374328740|ref|YP_005078924.1| DEAD/DEAH box helicase [Pseudovibrio sp. FO-BEG1]
gi|359341528|gb|AEV34902.1| DEAD/DEAH box helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 453
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L FSAT+ + L + L P T+ PA T +T
Sbjct: 178 PKKRQTLFFSATMPREIRDLSERFLTNPVEVTTA-PPATTVET----------------- 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++++ + K +L +L+ K + L F T +G+ RLA L+ D V
Sbjct: 220 --------VTQQIAHLEKDAKFPLLKELLEKDECERALVFTLTKKGSARLAARLNA-DGV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D+ +R K + +F+R K+ +VA+D ARGIDV +I VIN++
Sbjct: 271 PAEA---------IHGDMSQAERQKTLDKFKRGKLKTLVATDVAARGIDVSDISHVINFD 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P+ + Y+HRIGRTAR G+ GT++T
Sbjct: 322 MPNATENYVHRIGRTARAGKSGTAITFC 349
>gi|407940452|ref|YP_006856093.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
gi|407898246|gb|AFU47455.1| DEAD/DEAH box helicase [Acidovorax sp. KKS102]
Length = 490
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P + LLFSAT S + ++L AG+ P + E N
Sbjct: 177 ILSYLPKQRTTLLFSATFSPEIKRL-----------------AGSYLQNPITIEVARPN- 218
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
T + + ++ + + + K ++ +++ ++ FVN+ G RLAR L
Sbjct: 219 --------ETASTVEQRFYSANDDDKRRAIHHVLKTRGIKQAFIFVNSKLGCARLARSLE 270
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ A ++ D D+R K ++ F++ ++DL+V +D ARG+D++++
Sbjct: 271 R----------EGLKTAALHGDKSQDERLKALEAFKKGEVDLLVCTDVAARGLDIKDVPA 320
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VTLV+
Sbjct: 321 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|334312364|ref|XP_001379053.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Monodelphis
domestica]
Length = 891
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL P ++F + D P L FI
Sbjct: 497 QTMLFSATMTDEVKDLASVSLKNPVRIFVN-----SNTDVAPF--------LRQEFI--- 540
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ LL +
Sbjct: 541 --------RIRPNREGDREAIVSALLTRTFTDHVMLFTQTKKQAHRMHILLGLMG----- 587
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 588 -----LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 642
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 643 TIKHYVHRVGRTARAGRAGRSVSLVGEEE 671
>gi|85711377|ref|ZP_01042436.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
gi|85694878|gb|EAQ32817.1| ATP-dependent RNA helicase [Idiomarina baltica OS145]
Length = 423
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S + KL + SL + SV P T +
Sbjct: 176 PAKRQNLMFSATFSDEIRKLAK-SLVNNPVEISVAAPNATAE------------------ 216
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + L KP +L Q++R + V+ F T GA+RL + L +
Sbjct: 217 -------RIEQTLYAAEKTHKPRMLMQILRNLNLPQVIVFSRTKHGANRLVKQLDKDGFL 269
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + +F+ + ++VA+D ARG+D+E + VINY+
Sbjct: 270 AAAIHGNKSQGA----------RTKALSDFKSGAVQVLVATDIAARGLDIEKLPYVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G+ G +++LV E
Sbjct: 320 LPQVAEDYVHRIGRTGRAGQVGHAISLVMDEE 351
>gi|395790870|ref|ZP_10470329.1| hypothetical protein MEC_00320 [Bartonella alsatica IBS 382]
gi|395409166|gb|EJF75765.1| hypothetical protein MEC_00320 [Bartonella alsatica IBS 382]
Length = 470
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT AE+++KL T+ K VL +L+ A V+ F T GA + R L + +
Sbjct: 230 TTAAEITQKLYCVPTSEKKKVLGKLLANPAFTSVIVFTRTKYGADAVTRSLARMGYL--- 286
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+A ++ + R ++ FR R + ++VA+D ARGID+ I VINY+ PD
Sbjct: 287 -------VATIHGNKSQSARQSALKAFRERTVQVLVATDIAARGIDIPGISHVINYDLPD 339
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 340 EAESYVHRIGRTGRNGASGEAITL 363
>gi|390448328|ref|ZP_10233949.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
gi|389666297|gb|EIM77749.1| DEAD/DEAH box helicase [Nitratireductor aquibiodomus RA22]
Length = 453
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 94/214 (43%), Gaps = 37/214 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T+P+R Q LFSAT+ + E L Q L P L
Sbjct: 185 THPAR-QTALFSATMPKEVEGLAQSLLNDP--------------------------LRVE 217
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ TT E+++ L T K +L ++ AM+ V+ F T GA R+ R L
Sbjct: 218 IAKQSTTAGEITQHLVMARTKQKRKILSDMLADEAMRSVIVFARTKHGADRVTRDLER-- 275
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A ++ + + R + + FR + ++VA+D ARGIDV I V+N
Sbjct: 276 --------DGFEAAVIHGNKSQNARQRALNGFRDGSVRILVATDIAARGIDVPGISHVVN 327
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ PD + Y+HRIGRT R G G +VTL E
Sbjct: 328 FDLPDQPESYVHRIGRTGRNGASGEAVTLCDPGE 361
>gi|119477017|ref|ZP_01617298.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
gi|119449824|gb|EAW31061.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2143]
Length = 431
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S+D L + + P + V PA
Sbjct: 176 PKKRQNLLFSATFSNDIRGLAKGLVNNPVEIS--VSPAN--------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + + N K +L LI+ + VL F T GA++LA+ L
Sbjct: 213 ---TTVESVQHWIYPVDKNQKSKLLIHLIQDNQWSQVLVFSRTKHGANKLAKQL------ 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
GAG +N A ++ + R K + +F+ K+ ++VA+D ARG+D+E + V+N++
Sbjct: 264 --DGAG--INAAAIHGNKSQGARTKALADFKGGKVQVLVATDIAARGLDIEQLPHVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV+ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGATGEAVSLVSADE 351
>gi|407277792|ref|ZP_11106262.1| dead/deah box helicase [Rhodococcus sp. P14]
Length = 538
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D +A +G + V+ DL
Sbjct: 277 KAELVARVLQAEGRGATMIFTRTKRTAQKVA------DELAERG----FAVGAVHGDLGQ 326
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR+ KID++VA+D ARGID++++ V+NY+ P++ K Y+HRIGRT R GR
Sbjct: 327 IAREKALDKFRKGKIDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAGR 386
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 387 TGIAVTLV 394
>gi|342184287|emb|CCC93768.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 610
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 33/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LFSAT + E+L ++S ++P LF S+ + +A D L G++
Sbjct: 294 PKQRQTFLFSATQTTRVEQLARVSFYRPPLFISM---------KRKEDKATVDTLEQGYV 344
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C + + LVLY +R++ + V+ F ++ L ++ID
Sbjct: 345 --------------MCPSEQRLLVLYHFVRRNLKKKVIVFFSSRNAVSFHCELFNYIDVP 390
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G + K QR+ +F ++ +D ARG+D+ +D ++ ++
Sbjct: 391 CVAFHGKQ----------KQHQRSATYMQFCNAPSGVLFTTDVAARGLDIPQVDWIVQFD 440
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD+ KY+HR+GRTAR GR G ++ + E
Sbjct: 441 PPDDPVKYVHRVGRTARAGRSGNALMFLLPQE 472
>gi|395829165|ref|XP_003787731.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27 [Otolemur garnettii]
Length = 795
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 465 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 514
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 515 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 570
>gi|153839306|ref|ZP_01991973.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus AQ3810]
gi|149747170|gb|EDM58158.1| ATP-dependent rna helicase, dead box family [Vibrio
parahaemolyticus AQ3810]
Length = 412
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T +++E L + K L +LI+K+A VL F+ + A LA+ L+
Sbjct: 206 STNQDIAETLHLVNKGSKTKALIELIQKNAWTQVLVFIGAKENADGLAKKLNK------- 258
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG N ++ + D+R + + +F+ +I +++A+D LARGI +E + VVIN+E P
Sbjct: 259 -AGISTN--ALHGNKSQDEREEALAQFKSGQIQVLIATDLLARGIHIEQLPVVINFELPM 315
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HR+GRTAR G QG +++LV E
Sbjct: 316 HAETYVHRVGRTARAGEQGVAMSLVCHGE 344
>gi|261332680|emb|CBH15675.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 604
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 98/212 (46%), Gaps = 33/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LFSAT + E+L ++S ++P LF S+ + +A D L G++
Sbjct: 288 PRQRQTFLFSATQTTRVEQLARVSFYRPPLFISM---------KRKEDKATVDTLEQGYV 338
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C + + LVLY +R++ + V+ F ++ L ++ID
Sbjct: 339 --------------ICPSQQRLLVLYHFVRRNLKKKVIVFFSSRNAVSFHCELFNYIDVP 384
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G + K QR+ +F ++ +D ARG+D+ +D ++ ++
Sbjct: 385 CVAFHGKQ----------KQHQRSATYMQFCNAPSGVLFTTDVAARGLDIPQVDWIVQFD 434
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD+ KY+HR+GRTAR GR+G ++ + E
Sbjct: 435 PPDDPVKYVHRVGRTARAGRRGNALMFLLPQE 466
>gi|207344698|gb|EDZ71756.1| YHR065Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 496
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 303 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 336
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 337 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 392
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 393 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 446
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 447 YIHRVGRTARAGRSGKSISLVSQYD 471
>gi|241957775|ref|XP_002421607.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
gi|223644951|emb|CAX40951.1| ATP-dependent DEAD-box RNA helicase, ribosome assembly, putative
[Candida dubliniensis CD36]
Length = 592
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 107/204 (52%), Gaps = 35/204 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT++ + L QLSL +P +++P ++S + +F
Sbjct: 293 QTLLFSATMNTRIQDLIQLSLQKP--VRIMIDPPK--------------QVASKLLQQFV 336
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
+LKP +LYQL++ + + V+ FV + AH+L +L +
Sbjct: 337 R--------IRKRDHLKPALLYQLLKGVSTR-VVVFVARKETAHKLRIVLGLLG------ 381
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ ++E++ L +QR + ++ F+ + +++ +D ARG+D+ I++VINY+ P
Sbjct: 382 ----LKVSELHGALSQEQRLQNVKNFKSLDVPVLICTDLAARGLDIPKIELVINYDMPKT 437
Query: 204 IKKYIHRIGRTARGGRQGTSVTLV 227
+ Y+HR+GRTAR GR GTS+T V
Sbjct: 438 FEIYLHRVGRTARAGRDGTSITFV 461
>gi|167379929|ref|XP_001735325.1| ATP-dependent RNA helicase DBP6 [Entamoeba dispar SAW760]
gi|165902737|gb|EDR28474.1| ATP-dependent RNA helicase DBP6, putative [Entamoeba dispar SAW760]
Length = 502
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 101/206 (49%), Gaps = 19/206 (9%)
Query: 26 LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85
LLFSATLS P+ QL + +P L T ++ +++ K+ P
Sbjct: 263 LLFSATLSSSPKAFKQLQMNKPLLLTF--------------DDSFVRDINEITQTKYVLP 308
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
+ + + T K LV+ +L++ + C N+ A L RL+ + K
Sbjct: 309 STIENRYTPVLPVEKDLVVLELLKTSGKSIIFC--NSNNTAFVLFRLIQEMAEFIGKN-- 364
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
K I + S +K ++ K+I++ ID+ V +D ++RGID++ + VIN++ P + +
Sbjct: 365 -KKEIGCIISSMKQKEKLKVIKKVENDSIDVFVTTDLMSRGIDIKRLKTVINFDCPVSTQ 423
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HR GRT R G +G T+V T+E
Sbjct: 424 LYVHRAGRTGRAGNEGICHTIVLTNE 449
>gi|42521860|ref|NP_967240.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
gi|39574390|emb|CAE77894.1| ATP-dependent RNA helicase [Bdellovibrio bacteriovorus HD100]
Length = 505
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 101/223 (45%), Gaps = 39/223 (17%)
Query: 12 MWDTFLTYPSRPQR---LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSE 68
M D P PQ+ L FSAT+ H+ + L L PK + P SS
Sbjct: 169 MQDIKKILPLLPQKRHNLFFSATMPHEIQTLANRILVNPKKV----------EVTPVSST 218
Query: 69 AGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR 128
A F+ K P +L +L +++ ++ VL FV GA+R
Sbjct: 219 AEKVEQRVMFVDK---PQKLD-------------LLLHILKDESLSKVLVFVQMKYGANR 262
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
+ +D + G A ++ D +QR + ++EF+ + ++VA+D ARGID
Sbjct: 263 V------VDRLTKAGVAA----AGIHGDKSQNQRQRALEEFKNGDVRVLVATDIAARGID 312
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ I VIN E P + Y+HRIGRTAR G G S++ T E
Sbjct: 313 IDGITHVINLELPHIPESYVHRIGRTARAGATGISISFCTAEE 355
>gi|426241599|ref|XP_004014677.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Ovis aries]
Length = 765
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
>gi|24374899|ref|NP_718942.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
gi|24349603|gb|AAN56386.1| ATP-dependent RNA helicase DEAD box family [Shewanella oneidensis
MR-1]
Length = 409
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL + L PK V +P
Sbjct: 178 PAQRQTLLFSATLDDSIFSFSKNLLRDPKRI-EVAKPN---------------------- 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + V
Sbjct: 215 ---TTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL-GV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ + DL R K++QEF++ + ++VA+D ARG+D+ + VIN+E
Sbjct: 271 ATQS---------FHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
>gi|257054731|ref|YP_003132563.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256584603|gb|ACU95736.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 559
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 76/132 (57%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP ++ ++++ + F T + A ++A D++ +G A V+ DL
Sbjct: 251 KPELIAKVLQAEGRGLTMIFTRTKRTAQKVA------DDLVERG----FAAAAVHGDLGQ 300
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + ++ FR K+D++VA+D ARGIDVE + VINY+ P++ K Y+HRIGRT R GR
Sbjct: 301 GAREQALRAFRSGKVDILVATDVAARGIDVEGVTHVINYQMPEDEKTYVHRIGRTGRAGR 360
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 361 TGVAITLVDWDE 372
>gi|323304679|gb|EGA58441.1| Rrp3p [Saccharomyces cerevisiae FostersB]
Length = 543
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 303 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 336
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 337 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 392
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 393 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 446
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 447 YIHRVGRTARAGRSGKSISLVSQYD 471
>gi|301754403|ref|XP_002913034.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like
[Ailuropoda melanoleuca]
Length = 764
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 434 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 483
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 484 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 539
>gi|120597666|ref|YP_962240.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|120557759|gb|ABM23686.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
Length = 550
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +L + L + VE + T N ++ +
Sbjct: 187 PKQRQNLMFSATFSDEIRELAK------GLVNNPVEISVT-----------PRNAAATTV 229
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K +L QLI++H Q VL F T GA+RLA+ L
Sbjct: 230 KQWVCPVDKGQKSA---------LLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEE---- 276
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG K A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 277 ----AGIKA--AAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVNFD 330
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 331 LPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 362
>gi|109898452|ref|YP_661707.1| DEAD/DEAH box helicase [Pseudoalteromonas atlantica T6c]
gi|109700733|gb|ABG40653.1| DEAD/DEAH box helicase-like protein [Pseudoalteromonas atlantica
T6c]
Length = 435
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D L + L + SV P T+ EA +
Sbjct: 176 PTKRQNLLFSATFSDDIRALAK-GLVNNPVEVSVSPPN-------TTVEA---------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F P + N K L ++I+ + Q VL F T GA+R+A+ L
Sbjct: 219 EQFVCPVD---------KNQKTPALIRMIKDNDWQQVLVFSRTKHGANRIAKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K + EF+ K+ +VA+D ARG+D+ + V+NY+
Sbjct: 265 -----ARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDISQLPQVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LVT E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGASGQAISLVTADE 351
>gi|323348235|gb|EGA82484.1| Rrp3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 543
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 303 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 336
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 337 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 392
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 393 ------LHGDLNQNQRMGALDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 446
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 447 YIHRVGRTARAGRSGKSISLVSQYD 471
>gi|428781308|ref|YP_007173094.1| DNA/RNA helicase [Dactylococcopsis salina PCC 8305]
gi|428695587|gb|AFZ51737.1| DNA/RNA helicase, superfamily II [Dactylococcopsis salina PCC 8305]
Length = 467
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 35/207 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q FSAT+ + L + P + V +P GT P E A + G+
Sbjct: 174 PEQRQTACFSATMPRQIQDLINQFMDHP-VSLKVEQPKGT----PQRIEQRAYKIPRGW- 227
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T LKP++ + + L FV T + A + + L
Sbjct: 228 --------------TKGKALKPILAVE-----NPESALIFVRTKRTASEITQEL------ 262
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ AG + E + DL QR +++Q FR+ ++ LVVA+D ARG+DV+++ VIN++
Sbjct: 263 --QAAGYSAD--EYHGDLSQSQRERLVQRFRKSQVRLVVATDIAARGLDVQDLSHVINFD 318
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTL 226
PDN++ YIHRIGRT R G+ G +++L
Sbjct: 319 LPDNVETYIHRIGRTGRAGKTGVAISL 345
>gi|47228482|emb|CAG05302.1| unnamed protein product [Tetraodon nigroviridis]
Length = 599
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 93/205 (45%), Gaps = 28/205 (13%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT + + EKL + L P T + A Q TP+
Sbjct: 200 LFSATQTQELEKLVRAGLRNPVRITVKEKGAAASAVQ-------------------KTPS 240
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
LS T C + K L +R+H + L F +T R L +
Sbjct: 241 RLSNYYTICRSEDKFNHLVAFLRQHKHEKNLVFFSTCACVEYFGRALETLIK-------- 292
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
K N+ ++ +K D+RNKI EFR K ++V +D +ARGID+ +++ V+ Y+ P +
Sbjct: 293 KANVCCIHGKMK-DKRNKIFAEFRSLKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASA 351
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G QG ++ + E
Sbjct: 352 FVHRCGRTARIGNQGNALVFLLPME 376
>gi|296134828|ref|YP_003642070.1| DEAD/DEAH box helicase [Thiomonas intermedia K12]
gi|295794950|gb|ADG29740.1| DEAD/DEAH box helicase domain protein [Thiomonas intermedia K12]
Length = 533
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + ++L AG P N ++ +
Sbjct: 180 PKQRQNLLFSATFSEEIKRL-----------------AGDFLVNPQQVAVARQNATADLV 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + K +L LIR+ L F T GA+RLA L V
Sbjct: 223 EQIVFPVDRERKRD---------MLVHLIRERNWPQTLVFTRTKHGANRLAEQLDKDGIV 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT G K A R + + +F+ K+ ++VA+D ARGID++ + VV+NYE
Sbjct: 274 ATGFHGNKTQSA----------RLRALADFKSGKLQVLVATDIAARGIDIDQLPVVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV E
Sbjct: 324 LPNIPEDYVHRIGRTGRAGSNGQAISLVCVDE 355
>gi|113969505|ref|YP_733298.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113884189|gb|ABI38241.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 409
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL + L +PKL E N
Sbjct: 178 PAQRQTLLFSATLDDSIFGFSKNLLREPKLI-----------------EVAKRN------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + V
Sbjct: 215 ---TTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTTQLNQL-GV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ + DL R K++++F++ + ++VA+D ARG+D+ ++ VIN+E
Sbjct: 271 ATQA---------FHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADLQYVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSTGLAITLFSQED 353
>gi|355683275|gb|AER97071.1| DEAD box polypeptide 27 [Mustela putorius furo]
Length = 712
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 434 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 483
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 484 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 539
>gi|194224511|ref|XP_001501169.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Equus
caballus]
Length = 724
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 484 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 533
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 534 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 589
>gi|410627645|ref|ZP_11338382.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
gi|410152719|dbj|GAC25151.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola mesophila KMM
241]
Length = 435
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D L + L + SV P T+ EA +
Sbjct: 176 PTKRQNLLFSATFSDDIRALAK-GLVNNPVEVSVSPPN-------TTVEA---------V 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F P + N K L ++I+ + Q VL F T GA+R+A+ L
Sbjct: 219 EQFVCPVD---------KNQKTPALIRMIKDNDWQQVLVFSRTKHGANRIAKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K + EF+ K+ +VA+D ARG+D+ + V+NY+
Sbjct: 265 -----ARGITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDISQLPQVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LVT E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGASGQAISLVTADE 351
>gi|452946083|gb|EME51584.1| dead/deah box helicase [Rhodococcus ruber BKS 20-38]
Length = 538
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 76/128 (59%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D +A +G + V+ DL
Sbjct: 277 KAELVARVLQAEGRGATMIFTRTKRTAQKVA------DELAERG----FAVGAVHGDLGQ 326
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR+ KID++VA+D ARGID++++ V+NY+ P++ K Y+HRIGRT R GR
Sbjct: 327 IAREKALDKFRKGKIDVLVATDVAARGIDIDDVTHVVNYQCPEDEKTYVHRIGRTGRAGR 386
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 387 TGIAVTLV 394
>gi|440902879|gb|ELR53614.1| Putative ATP-dependent RNA helicase DDX27, partial [Bos grunniens
mutus]
Length = 741
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 405 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 454
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 455 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 510
>gi|325087574|gb|EGC40884.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus H88]
Length = 485
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12 MWDTFLTYPSRPQR-LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ D L R +R LFSAT+S E L + SL P L S+
Sbjct: 222 ILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNP-LRVSISS--------------- 265
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
K+ T A L + K + L L+ ++A Q + F T RLA
Sbjct: 266 ---------NKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLA 316
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
LL T G G+ ++ L R + +FR R D++VA+D ARG+D+
Sbjct: 317 ILLR------TLGFGS----IPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIP 366
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++DVV+N++ P + K YIHR+GRTAR G+ G + ++VT ++
Sbjct: 367 SVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
>gi|313893353|ref|ZP_07826927.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442122|gb|EFR60540.1| putative DEAD-box ATP-dependent RNA helicase CshA [Veillonella sp.
oral taxon 158 str. F0412]
Length = 432
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT+ P+K+ L+ K + S +P S A GK
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPVSVTAE---------GKHV 210
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +++ + K L ++I + + F N +GA RL+ L
Sbjct: 211 TLESIDQRVYMMNPEEKTERLIKMIEEDNPFLAIVFCNKREGAVRLSYEL--------TA 262
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+ P +
Sbjct: 263 AG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDVPRD 320
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGRT R G G +VT T +
Sbjct: 321 VDYYIHRIGRTGRAGNSGVAVTFATPQD 348
>gi|410692356|ref|YP_003622977.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
gi|294338780|emb|CAZ87114.1| ATP-dependent RNA helicase [Thiomonas sp. 3As]
Length = 533
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + ++L AG P N ++ +
Sbjct: 180 PKQRQNLLFSATFSEEIKRL-----------------AGDFLVNPQQVAVARQNATADLV 222
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + K +L LIR+ L F T GA+RLA L V
Sbjct: 223 EQIVFPVDRERKRD---------MLVHLIRERNWPQTLVFTRTKHGANRLAEQLDKDGIV 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT G K A R + + +F+ K+ ++VA+D ARGID++ + VV+NYE
Sbjct: 274 ATGFHGNKTQSA----------RLRALADFKSGKLQVLVATDIAARGIDIDQLPVVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV E
Sbjct: 324 LPNIPEDYVHRIGRTGRAGSNGQAISLVCVDE 355
>gi|219669142|ref|YP_002459577.1| DEAD/DEAH box helicase [Desulfitobacterium hafniense DCB-2]
gi|219539402|gb|ACL21141.1| DEAD/DEAH box helicase domain protein [Desulfitobacterium hafniense
DCB-2]
Length = 530
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 38/226 (16%)
Query: 8 GLVIMWDTFLTYPSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPT 65
G V +T L + +R +LFSAT+ + +KL Q + QPK
Sbjct: 165 GFVEDIETILKQVPKEERQVMLFSATMPPEIKKLAQNYMHQPK----------------- 207
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQG 125
S D L+ I + A +K L ++I + + F T +G
Sbjct: 208 SVAVSRDELTVPLIEQVFYEAR---------DKIKVDALCRIIDMEDIGQAIIFCRTKRG 258
Query: 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLAR 185
L L A ++ DL QR++++++FR K++L+VA+D AR
Sbjct: 259 VDELVAALEARGYFADA----------LHGDLSQQQRDRVMKKFRDGKVELLVATDVAAR 308
Query: 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
G+D++N+ VIN++ P + + Y+HRIGRT R GR+G ++TLV++ E
Sbjct: 309 GLDIDNVTHVINFDIPQDPESYVHRIGRTGRAGRKGQAITLVSSRE 354
>gi|443897915|dbj|GAC75254.1| ATP-dependent RNA helicase [Pseudozyma antarctica T-34]
Length = 909
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 28/216 (12%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQ-----------PTSSEAGA 71
Q +LFSAT++ D E+L +LSL +P +LF V+P T + T AGA
Sbjct: 501 QTMLFSATMTDDVEQLVRLSLKRPVRLF---VDPKRTTAKKLVQEFVRVRGTGTGGVAGA 557
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
D L+ G + ++ A K + + +P +L L + V+ FV + + AH+L
Sbjct: 558 DGLA-GVGQEVSSSAPSGGKRSEDAQ--RPALLLALCTRTFTSQVIIFVRSKKLAHQLKI 614
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+ + ++ E++ DL +QR + FR K+D ++A+D +RG+D++
Sbjct: 615 VFGLLG----------LSAGELHGDLSQEQRIDALTAFRDGKVDFLIATDLASRGLDIKG 664
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ VINY+ P + Y+HR+GRTAR GR G +VTLV
Sbjct: 665 VQTVINYDMPGQFEAYLHRVGRTARAGRNGRAVTLV 700
>gi|423693711|ref|ZP_17668231.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
gi|387999548|gb|EIK60877.1| putative ATP-dependent RNA helicase [Pseudomonas fluorescens SS101]
Length = 444
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 98/220 (44%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P S E
Sbjct: 169 LANIYRMLPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ P + K P + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQWVVPVDKKRK---------PELFVHLMRKGRWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ + ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVDKLQGLGINADGIHGDKPQATRQRALDRFKASDVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADE 352
>gi|122692565|ref|NP_001073740.1| probable ATP-dependent RNA helicase DDX27 [Bos taurus]
gi|142980808|sp|A1A4H6.1|DDX27_BOVIN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|119223998|gb|AAI26498.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Bos taurus]
gi|296481114|tpg|DAA23229.1| TPA: probable ATP-dependent RNA helicase DDX27 [Bos taurus]
Length = 765
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL P ++F + D P L FI
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVN-----SNTDVAPF--------LRQEFI--- 409
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ LL +
Sbjct: 410 --------RIRPNREGDREAIVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLMG----- 456
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 457 -----LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 511
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 512 TIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
>gi|386314915|ref|YP_006011080.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319427540|gb|ADV55614.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 539
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +L + L + VE + T N ++ +
Sbjct: 176 PKQRQNLMFSATFSDEIRELAK------GLVNNPVEISVT-----------PRNAAATTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K +L QLI++H Q VL F T GA+RLA+ L
Sbjct: 219 KQWVCPVDKGQKSA---------LLTQLIKQHDWQQVLVFSRTKHGANRLAKNLEE---- 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG K A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 266 ----AGIKA--AAIHGNKSQTARTKALADFKNGQVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 351
>gi|449479900|ref|XP_002199492.2| PREDICTED: probable ATP-dependent RNA helicase DDX52 [Taeniopygia
guttata]
Length = 615
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 39/207 (18%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
+R LFSAT +HD E+ +L+L DN+ +G
Sbjct: 354 RRALFSATFAHDVEEWCKLNL---------------------------DNVVLVSVGARN 386
Query: 84 TPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ AE E+ L S K + +L++K VL FV Q R L H +
Sbjct: 387 SAAETVEQELLFVGSETGKLTAMRELVKKGFAPPVLVFV---QSIERAKELFHELIYEG- 442
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+N+ +++D QR++++Q FR KI +++ S LARG+D + +++VINY+ P
Sbjct: 443 ------INVDVIHADKTQQQRDRVVQSFRAGKIWVLICSALLARGMDFKGVNMVINYDLP 496
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +YIHRIGRT R G +G +VT T
Sbjct: 497 TSAVEYIHRIGRTGRAGHRGKAVTFFT 523
>gi|281351106|gb|EFB26690.1| hypothetical protein PANDA_000812 [Ailuropoda melanoleuca]
Length = 703
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 403 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 452
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 453 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 508
>gi|255716462|ref|XP_002554512.1| KLTH0F07106p [Lachancea thermotolerans]
gi|238935895|emb|CAR24075.1| KLTH0F07106p [Lachancea thermotolerans CBS 6340]
Length = 525
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 285 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSTKYQTVD 318
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R+A L + ++ AT
Sbjct: 319 TLIQTLMVVPGGLKNTFLIYLLNEFLGKTAIVFTRTKANAERIATLCNLLEFSATA---- 374
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 375 ------LHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 428
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 429 YIHRVGRTARAGRSGKSISLVSQYD 453
>gi|170099199|ref|XP_001880818.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644343|gb|EDR08593.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 449
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 98/205 (47%), Gaps = 35/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ + KL + SL + P +A + ++TT +
Sbjct: 192 LFSATMTANVSKLQRASL-----------------SDPVRVDAS--------LFRYTTVS 226
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + C K + L LI A ++ FV T A L+ +L + A
Sbjct: 227 TLLQHYLLCPLVEKEVTLVYLINSLAQNLIIVFVRTVADAKCLSIILRSLGFEAVP---- 282
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ +L QR + F+ K ++VA+D +RG+DV N+DVVINY+ P + K
Sbjct: 283 ------LHGELTQSQRLGVFTRFKSGKSRILVATDVASRGLDVPNVDVVINYDVPTHSKD 336
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S+ +VT ++
Sbjct: 337 YIHRVGRTARAGRAGKSILMVTQYD 361
>gi|401625423|gb|EJS43432.1| rrp3p [Saccharomyces arboricola H-6]
Length = 500
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 260 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 293
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 294 TLVQTLMVVPGGLKNTYLVYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSAT----- 348
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 349 -----ALHGDLNQNQRMGALDLFKAGKRAILVATDVAARGLDIPSVDIVVNYDIPVDSKS 403
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 404 YIHRVGRTARAGRSGKSISLVSQYD 428
>gi|421486785|ref|ZP_15934320.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
gi|400194954|gb|EJO27955.1| ATP-dependent RNA helicase [Achromobacter piechaudii HLE]
Length = 497
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S++ KL + L P E A N ++
Sbjct: 196 PTQRQGLLFSATFSNEIRKLGRSYL-----------------NHPVEIEVAARNATA--- 235
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT +++ K+ S + K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 236 ---TTITQIAYKM---SGDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-DGV 288
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ +++++VA+D ARG+DV + VINY+
Sbjct: 289 KAE---------SIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 340 LPYNAEDYVHRIGRTGRAGASGEAIALFTPDE 371
>gi|114046344|ref|YP_736894.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113887786|gb|ABI41837.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 549
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S + +L + + QP + V P N ++ +
Sbjct: 176 PAKRQNLMFSATFSDEIRELAKGLVNQPVEIS--VTP---------------RNAAANTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + N K +L QLI++ Q VL F T GA+RLA+ L +
Sbjct: 219 KQWICPVD---------KNQKSALLIQLIKQEDWQQVLVFSRTKHGANRLAKSLIQAE-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 268 --------ISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 351
>gi|430746222|ref|YP_007205351.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430017942|gb|AGA29656.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 415
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 103/214 (48%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P+ Q LL SAT+S D KL Q +F+P +L S EP+ D++ +
Sbjct: 182 PNPHQTLLLSATISPDIRKLAQRYMFEPVELNLSRDEPS-------------VDSIKQYY 228
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA-RLLHHID 137
+ T K +L L+++ + + F T +GA RLA RL I
Sbjct: 229 V--------------TVEHERKFDLLVHLLQRDRPRQCIVFTRTKRGAERLADRLRGRIP 274
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
VAT ++ DL RN+++ FR I ++VA+D + RGIDV +I VIN
Sbjct: 275 GVAT-----------IHGDLAQTVRNRVMLGFRNGTIPVLVATDVVGRGIDVNDISHVIN 323
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ PD+ + Y+HRIGRT R G+ G + V +
Sbjct: 324 FDVPDDAENYVHRIGRTGRMGKDGLAYMFVCPDQ 357
>gi|37362659|ref|NP_011932.2| RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|81175193|sp|P38712.2|RRP3_YEAST RecName: Full=ATP-dependent rRNA helicase RRP3; AltName:
Full=Ribosomal RNA-processing protein 3
gi|285809971|tpg|DAA06758.1| TPA: RNA-dependent ATPase RRP3 [Saccharomyces cerevisiae S288c]
gi|392298867|gb|EIW09962.1| Rrp3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 501
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 295 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 350
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 351 ------LHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|356528665|ref|XP_003532920.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 587
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 107/219 (48%), Gaps = 39/219 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F P Q L FSAT + + +KL + +Q K++ V A G
Sbjct: 232 FQCLPENRQNLFFSATTTSNLQKLRER--YQDKMY---VYEAYEG--------------- 271
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV---LCFVNTAQGAHRLARL 132
F T L ++ +K + L ++ K G+ + F++T + HRL+ +
Sbjct: 272 ------FKTVETLKQQAIFIPKKVKDVYLMHILAKMEDMGIRSAIVFISTCRDCHRLSLM 325
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L +D A A +YS QR + + +F+ K+ +++A+D +RG+D+ +
Sbjct: 326 LEVLDQEA----------AALYSFKSQAQRLEALHQFKSGKVSILLATDVASRGLDIPTV 375
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D+VINY+ P + YIHR+GRTAR GR G +++LVT ++
Sbjct: 376 DLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQND 414
>gi|397475811|ref|XP_003809313.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Pan paniscus]
Length = 605
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 275 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 324
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 325 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 380
>gi|345328224|ref|XP_001507068.2| PREDICTED: probable ATP-dependent RNA helicase DDX27
[Ornithorhynchus anatinus]
Length = 716
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 386 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 435
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 436 VLVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 491
>gi|344199440|ref|YP_004783766.1| DEAD/DEAH box helicase domain-containing protein [Acidithiobacillus
ferrivorans SS3]
gi|343774884|gb|AEM47440.1| DEAD/DEAH box helicase domain protein [Acidithiobacillus
ferrivorans SS3]
Length = 419
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + L L P + S A ADN++
Sbjct: 180 PKKRQNLLFSATFSPEIRALADGLLNNP------------ASVEVASRNATADNVA---- 223
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++ + K +L LI +H VL F T GA RLA+ L D V
Sbjct: 224 ----------QRVFAVDQDRKRELLAHLIEEHQWGQVLVFTRTKHGADRLAKHLSQ-DGV 272
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ D R + + EF+ K+ ++VA+D ARGID+ ++ V+N+E
Sbjct: 273 QAMA---------IHGDKSQGARTRALAEFKEGKVRVLVATDIAARGIDISDLPHVVNFE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G G +V+LV++ E
Sbjct: 324 LPHVPEDYVHRIGRTGRAGNNGQAVSLVSSEE 355
>gi|332306494|ref|YP_004434345.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
gi|332173823|gb|AEE23077.1| DEAD/DEAH box helicase domain protein [Glaciecola sp. 4H-3-7+YE-5]
Length = 436
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D L + L + SV P
Sbjct: 176 PAKRQNLLFSATFSDDIRALAK-GLVNNPVEVSVSPPN---------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + + + N K L ++I+ + Q VL F T GA+R+A+ L
Sbjct: 213 ---TTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQVLVFSRTKHGANRIAKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G + A ++ + R K + EF+ K+ +VA+D ARG+D+ + V+NY+
Sbjct: 265 -ARG----ITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDISQLPQVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LVT E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGASGQAISLVTADE 351
>gi|167630436|ref|YP_001680935.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
gi|167593176|gb|ABZ84924.1| dead/deah box helicase [Heliobacterium modesticaldum Ice1]
Length = 540
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 38/213 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT+ ++L + + +P+ T +
Sbjct: 189 PEERQTLLFSATMPGPIQQLARQYMKEPEFVTISRD------------------------ 224
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
K T P + + C + K L +++ + + F T +G L L
Sbjct: 225 -KLTVPL-IEQVYYECKESQKVDALCRILDMEEIGSSIIFCRTKRGVDELVAALE----- 277
Query: 140 ATKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
T+ AE ++ DL QR++++++FR K +L++A+D ARG+DVEN+ VINY
Sbjct: 278 ------TRGYFAEGLHGDLTQAQRDRVMKKFRDGKAELLIATDVAARGLDVENVTHVINY 331
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRT R GR+G ++TL+ E
Sbjct: 332 DIPQDPESYVHRIGRTGRAGRKGIAITLINYRE 364
>gi|73992237|ref|XP_534451.2| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Canis lupus familiaris]
Length = 765
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 433 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 482
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 483 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 538
>gi|416919360|ref|ZP_11932532.1| ATP-dependent RNA helicase, partial [Burkholderia sp. TJI49]
gi|325527064|gb|EGD04490.1| ATP-dependent RNA helicase [Burkholderia sp. TJI49]
Length = 391
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 98 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 134
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 135 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARNLERDGVV 191
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K I +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 192 ASAIHGDKSQI----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 241
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 242 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 273
>gi|402847520|ref|ZP_10895803.1| DEAD/DEAH box helicase [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402266180|gb|EJU15625.1| DEAD/DEAH box helicase [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 460
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 11/148 (7%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P + + C K +L QL R+ + F ++ L L +
Sbjct: 216 PESIVQSAYVCYERQKLPILTQLFRETPPTRTIIFSSSKLKVKELTAALSRL-------- 267
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
+ + +++SDL ++R ++++ F+ IDL+VA+D +ARGID++NI +VINY+ P +
Sbjct: 268 --SIRVEQMHSDLTQEKREEVMKNFKSGNIDLLVATDVVARGIDIDNIRMVINYDIPHDP 325
Query: 205 KKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ Y+HRIGRTARGG +G ++T V+ E
Sbjct: 326 EDYVHRIGRTARGGNDEGLAITFVSEKE 353
>gi|383758280|ref|YP_005437265.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
gi|381378949|dbj|BAL95766.1| ATP-dependent RNA helicase RhlE [Rubrivivax gelatinosus IL144]
Length = 466
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + + L L QP L V T DT
Sbjct: 180 PQKKQSLLFSATFSDEIKALADRLLNQPALI-EVARRNATADT----------------- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++K+ K +L LIR+ VL F GA+RLA L+
Sbjct: 222 --------IAQKVYPVGREKKKELLAHLIRQGDWHQVLVFTRMKHGANRLAEYLNEQGIT 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + EF+ + ++VA+D ARGID++ + V+NYE
Sbjct: 274 AMAIHGNKSQGA----------RTKALAEFKAGTLQVLVATDIAARGIDIDQLPHVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 324 LPNVPEDYVHRIGRTGRAGASGEAVSLVCLDE 355
>gi|345863070|ref|ZP_08815283.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
gi|345125953|gb|EGW55820.1| ATP-dependent RNA helicase RhlE [endosymbiont of Tevnia jerichonana
(vent Tica)]
Length = 456
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + L + +V+ QP N ++ +
Sbjct: 176 PKQRQNLMFSATFSDEIRHLAK----------GLVK-------QPVEISVNPRNTTAKTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + +K P +L QLIR + + VL F T QGA RL R L
Sbjct: 219 KQWICPVDKKQK---------PALLTQLIRDNRWRQVLVFTRTKQGADRLTRHL------ 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG G + ++ + R K + +F+ + ++VA+D ARG+D++ + V+N++
Sbjct: 264 --KGKG--IEAEAIHGNKSQGARTKALADFKEGSVRILVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G +G +++LV+ E
Sbjct: 320 LPHVAEDYIHRIGRTGRAGARGQAISLVSADE 351
>gi|227541917|ref|ZP_03971966.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227182360|gb|EEI63332.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 455
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 73 NLSSGFIGK-FTTPAELSEKLTTCSTNL----------KPLVLYQLIRKHAMQGVLCFVN 121
L+ GF+ K AE+S + T +T K V+ ++++ + FV
Sbjct: 203 GLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARGRGRTIIFVR 262
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + A +AR L AG +A V+ D+ R + +Q FR +D++VA+D
Sbjct: 263 TKRSAAEVARDL----------AGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATD 312
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ARGID++++ VINY+ PD+ Y+HRIGRT R G GT+VTLV E
Sbjct: 313 VAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDE 362
>gi|410646395|ref|ZP_11356846.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
gi|410134001|dbj|GAC05245.1| cold-shock DEAD box protein A homolog [Glaciecola agarilytica NO2]
Length = 436
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D L + L + SV P
Sbjct: 176 PAKRQNLLFSATFSDDIRALAK-GLVNNPVEVSVSPPN---------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + + + N K L ++I+ + Q VL F T GA+R+A+ L
Sbjct: 213 ---TTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQVLVFSRTKHGANRIAKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G + A ++ + R K + EF+ K+ +VA+D ARG+D+ + V+NY+
Sbjct: 265 -ARG----ITSAAIHGNKSQGARTKALAEFKNGKVRALVATDIAARGLDISQLPQVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LVT E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGASGQAISLVTADE 351
>gi|319944378|ref|ZP_08018652.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
gi|319742339|gb|EFV94752.1| ATP-dependent RNA helicase RhlE [Lautropia mirabilis ATCC 51599]
Length = 546
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 100/212 (47%), Gaps = 39/212 (18%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
R Q L+FSAT S + KL + L +PKL + +
Sbjct: 199 RRQNLMFSATFSDEIRKLAKRFLNEPKLIE---------------------------VAR 231
Query: 82 FTTPAELSEKLT--TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T AE E+ S +LK + LIR+ ++ V+ F NT GA RLAR L +
Sbjct: 232 PNTLAENVEQTVYHVPSEDLKRDAVGALIRERGIEQVIVFSNTKIGAGRLARHLQKEGFL 291
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ D +R K + F+ +I ++VA+D ARG+D+ + VINY+
Sbjct: 292 AEA----------IHGDKSQQERLKTLDGFKAGEIKVLVATDVAARGLDIAELPAVINYD 341
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + Y+HRIGRT R G G +++L+ H+
Sbjct: 342 LPHSPEDYVHRIGRTGRAGASGMALSLMVDHD 373
>gi|410641166|ref|ZP_11351689.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
gi|410139293|dbj|GAC09876.1| DEAD-box ATP-dependent RNA helicase cshA [Glaciecola chathamensis
S18K6]
Length = 436
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D L + L + SV P
Sbjct: 176 PAKRQNLLFSATFSDDIRALAK-GLVNNPVEVSVSPPN---------------------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + + + N K L ++I+ + Q VL F T GA+R+A+ L
Sbjct: 213 ---TTVEAVEQSICPVDKNQKTPALIRMIKDNDWQQVLVFSRTKHGANRIAKQLE----- 264
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G + A ++ + R K + EF+ K+ +VA+D ARG+D+ + V+NY+
Sbjct: 265 -ARG----ITSAAIHGNKSQGARTKALAEFKSGKVRALVATDIAARGLDISQLPQVVNYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LVT E
Sbjct: 320 LPNVAEDYVHRIGRTGRAGASGQAISLVTADE 351
>gi|403282331|ref|XP_003932605.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Saimiri
boliviensis boliviensis]
Length = 765
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 540
>gi|423015941|ref|ZP_17006662.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
gi|338781000|gb|EGP45396.1| putative ATP-dependent RNA helicase [Achromobacter xylosoxidans
AXX-A]
Length = 457
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S++ KL + L QP E A N ++ I
Sbjct: 168 PAQRQGLLFSATFSNEIRKLGRSYL-----------------NQPVEIEVAARNATANTI 210
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++ K+ S + K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 211 ------TQIAYKM---SGDQKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-DGV 260
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ +++++VA+D ARG+DV + VINY+
Sbjct: 261 KAE---------SIHGDKTQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYD 311
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 312 LPYNAEDYVHRIGRTGRAGATGEAIALFTGDE 343
>gi|313887420|ref|ZP_07821109.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
asaccharolytica PR426713P-I]
gi|332299626|ref|YP_004441547.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312923062|gb|EFR33882.1| putative ATP-dependent RNA helicase RhlE [Porphyromonas
asaccharolytica PR426713P-I]
gi|332176689|gb|AEE12379.1| DEAD/DEAH box helicase domain protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 438
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 107/224 (47%), Gaps = 42/224 (18%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFT-SVVEPAGTGDTQPTSSEAG 70
+ + + P Q ++FSAT+ + KL + L P L +V +P
Sbjct: 170 IMEIYKALPEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKP-------------- 215
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHR 128
P + + C K ++ L + + + F T H
Sbjct: 216 --------------PKSIMQTAYICYDAQKLPIIRSLFTNPESEVSRTIIFAGTKATVHA 261
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
LA+ L + +AE++SDL ++R +++++FR +I ++VA+D +ARGID
Sbjct: 262 LAQTLSR----------DGLPVAEMHSDLSQERREEVLRDFRMGRIKVLVATDIVARGID 311
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+++I VVINYE P + + Y+HRIGRTARG +G ++TLV+ +
Sbjct: 312 IDDIAVVINYEVPRDFEDYVHRIGRTARGADGKGLAITLVSPSD 355
>gi|170727393|ref|YP_001761419.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169812740|gb|ACA87324.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 447
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 36/207 (17%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
R Q L+FSATL+H+ + E A P GA N+ +
Sbjct: 179 RRQTLMFSATLNHN----------------EINEIASELLKDPKHVAVGASNIEN----- 217
Query: 82 FTTPAELSEKLTTCS-TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++++K+ C + K +L ++++ + V+ F T Q RLA+ L A
Sbjct: 218 ----QDITQKIYLCDHLDHKEALLQSILKRGEQKQVIIFTATRQDTDRLAKKL------A 267
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
+G N A + DL RN+I+ +F R D++V +D +RG+D+ N+ +VIN++
Sbjct: 268 EEG----FNTASLSGDLNQSARNQIMDQFSRGMQDILVTTDVASRGLDLLNVSLVINFDM 323
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P ++Y+HRIGRTAR G +G +++ V
Sbjct: 324 PKFAEEYVHRIGRTARAGAKGDAISFV 350
>gi|227486921|ref|ZP_03917237.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092995|gb|EEI28307.1| ATP-dependent RNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 455
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 88/170 (51%), Gaps = 21/170 (12%)
Query: 73 NLSSGFIGK-FTTPAELSEKLTTCSTNL----------KPLVLYQLIRKHAMQGVLCFVN 121
L+ GF+ K AE+S + T +T K V+ ++++ + FV
Sbjct: 203 GLARGFMNKPVHIRAEMSGEAETNATTKQVVFKSHRMDKVAVISRVLQARGRGRTIIFVR 262
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
T + A +AR L AG +A V+ D+ R + +Q FR +D++VA+D
Sbjct: 263 TKRSAAEVARDL----------AGAGFQVASVHGDMSQSARERSLQGFRDGVVDILVATD 312
Query: 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ARGID++++ VINY+ PD+ Y+HRIGRT R G GT+VTLV E
Sbjct: 313 VAARGIDIDDVTHVINYQTPDDELTYVHRIGRTGRAGHTGTAVTLVGYDE 362
>gi|389638234|ref|XP_003716750.1| ATP-dependent RNA helicase dbp6 [Magnaporthe oryzae 70-15]
gi|351642569|gb|EHA50431.1| ATP-dependent RNA helicase dbp6 [Magnaporthe oryzae 70-15]
gi|440465157|gb|ELQ34497.1| ATP-dependent RNA helicase dbp6 [Magnaporthe oryzae Y34]
gi|440489693|gb|ELQ69322.1| ATP-dependent RNA helicase dbp6 [Magnaporthe oryzae P131]
Length = 896
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
Query: 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167
+ A+ VL F + + A RL+RLL I A + + I + S + +R K+I
Sbjct: 699 VEDSAIDSVLIFTKSNESALRLSRLLEII---APRQVAS--CIGTLTSTTRTSERKKVIN 753
Query: 168 EFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++ K+ ++VASD +ARG+D+ N+D V+NY+ P +++ Y+HR+GRTAR GR G + T
Sbjct: 754 QYKSGKLRILVASDLVARGLDLPNLDHVVNYDMPPSVRTYVHRVGRTARAGRAGRAWTFF 813
Query: 228 TTHE 231
T E
Sbjct: 814 TKTE 817
>gi|163855229|ref|YP_001629527.1| ATP-dependent RNA helicase [Bordetella petrii DSM 12804]
gi|163258957|emb|CAP41256.1| putative ATP-dependent RNA helicase [Bordetella petrii]
Length = 476
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S++ KL + L QP E A N ++ +
Sbjct: 196 PAQRQGLLFSATFSNEIRKLGRTYL-----------------NQPVEIEVAARNATADTV 238
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
S+ ++ K + L++ ++ V+ F NT G RLAR L D V
Sbjct: 239 ---------SQIAYQMPSDAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARELER-DGV 288
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K + F+ +++++VA+D ARG+DV + VINY+
Sbjct: 289 RAES---------IHGDKSQADRMKALDAFKAGELEVLVATDVAARGLDVAGVPCVINYD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 340 LPHNAEDYVHRIGRTGRAGASGEAIALFTADE 371
>gi|381160579|ref|ZP_09869811.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
gi|380878643|gb|EIC20735.1| DNA/RNA helicase, superfamily II [Thiorhodovibrio sp. 970]
Length = 438
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+R Q LLFSAT S D E+L L P E N ++ +
Sbjct: 179 PARRQNLLFSATYSRDIEQLATGLL-----------------NDPLRIEVARRNTAAETV 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P E K +L LI L F T GA+RLA+ L D +
Sbjct: 222 RQLAHPVERGHKRA---------LLSHLIASGGWDQTLVFTRTKHGANRLAQQLER-DGI 271
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R + + +F+R + +VA+D ARG+D+E + V+N+E
Sbjct: 272 SA---------AAIHGNKSQSARTRALADFKRGAVRTLVATDIAARGLDIERLPHVVNFE 322
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G GT+V+LV+ E
Sbjct: 323 LPNVAEDYVHRIGRTGRAGESGTAVSLVSPEE 354
>gi|334340505|ref|YP_004545485.1| DEAD/DEAH box helicase [Desulfotomaculum ruminis DSM 2154]
gi|334091859|gb|AEG60199.1| DEAD/DEAH box helicase domain protein [Desulfotomaculum ruminis DSM
2154]
Length = 532
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 102/217 (47%), Gaps = 43/217 (19%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T P R Q LLFSAT+ + +L + L +PKL T + T T P +
Sbjct: 178 TPPVR-QTLLFSATMPDEITRLARQYLTEPKLVTV----SKTNLTVPQIEQ--------- 223
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV---LCFVNTAQGAHRLARLLH 134
V Y+ KH ++ + L + AQG R
Sbjct: 224 -------------------------VYYEAPEKHKLEALCRLLDITDIAQGIV-FCRTKR 257
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+D++ + ++ DL QRN ++++FR +++L+VA+D ARG+D+E +
Sbjct: 258 GVDDLVSGLQARGYTAVSLHGDLSQQQRNTVMRQFRSGEVELLVATDVAARGLDIEGVSH 317
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P + + Y+HRIGRT R GR G ++T++T E
Sbjct: 318 VINYDIPQDPEFYVHRIGRTGRAGRSGVAITIITPRE 354
>gi|154284444|ref|XP_001543017.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
gi|160358658|sp|A6QRQ7.1|RRP3_AJECN RecName: Full=ATP-dependent rRNA helicase RRP3
gi|150406658|gb|EDN02199.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus NAm1]
Length = 485
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12 MWDTFLTYPSRPQR-LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ D L R +R LFSAT+S E L + SL P L S+
Sbjct: 222 ILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNP-LRVSISS--------------- 265
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
K+ T A L + K + L L+ ++A Q + F T RLA
Sbjct: 266 ---------NKYQTVATLLQSYLFIPHKYKDIYLVYLLNEYAGQSAIVFTRTVNETQRLA 316
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
LL + G G+ ++ L R + +FR R D++VA+D ARG+D+
Sbjct: 317 ILLRAL------GFGS----IPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIP 366
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++DVV+N++ P + K YIHR+GRTAR G+ G + ++VT ++
Sbjct: 367 SVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
>gi|71747626|ref|XP_822868.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70832536|gb|EAN78040.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 604
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 97/212 (45%), Gaps = 33/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LFSAT + E+L ++S ++P LF S+ + +A D L G++
Sbjct: 288 PRQRQTFLFSATQTTRVEQLARVSFYRPPLFISM---------KRKEDKATVDTLEQGYV 338
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C + + LVLY +R++ + V+ F ++ L ++ID
Sbjct: 339 --------------ICPSQQRLLVLYHFVRRNLKKKVIVFFSSRNAVSFHCELFNYIDVP 384
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
G + K QR+ +F ++ +D ARG+D+ +D ++ ++
Sbjct: 385 CVAFHGKQ----------KQHQRSATYMQFCNAPSGVLFTTDVAARGLDIPQVDWIVQFD 434
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD+ KY+HR+GRTAR GR G ++ + E
Sbjct: 435 PPDDPVKYVHRVGRTARAGRTGNALMFLLPQE 466
>gi|395752428|ref|XP_003779421.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 2
[Pongo abelii]
Length = 796
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 466 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
>gi|367014487|ref|XP_003681743.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
gi|359749404|emb|CCE92532.1| hypothetical protein TDEL_0E02890 [Torulaspora delbrueckii]
Length = 501
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 261 LFSATMTSKIDKLQRASLTDP--------------------------VKCAVSNKYQTVD 294
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R++ L + ++
Sbjct: 295 TLVQTLMVVPGGLKNTFLIYLLNEFIGKTTIIFTRTKANAERISGLCNLLE--------- 345
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
N ++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 346 -FNATALHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 404
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 405 YIHRVGRTARAGRSGKSISLVSQYD 429
>gi|407791415|ref|ZP_11138499.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
gi|407200206|gb|EKE70216.1| DEAD/DEAH box helicase [Gallaecimonas xiamenensis 3-C-1]
Length = 256
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L FSAT + + L + L QPKL E N
Sbjct: 18 PEAHQTLFFSATFNDEVFALSKTILKQPKLI-----------------EVAERN------ 54
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A++ ++ K ++ LI Q VL F T Q LA+ L D +
Sbjct: 55 ---STVAKIEQRFYEVDNKRKAGLVAYLIGSKNWQQVLIFTRTKQAVDALAKELEK-DGI 110
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A V+ D R++ ++EF+ ++ +VA+D ARG+D+E + VINYE
Sbjct: 111 SA---------AAVHGDKSQGARDRGLEEFKTGQVRALVATDVAARGLDIEQLQFVINYE 161
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + YIHRIGRT R G+ G +V+LV+ +
Sbjct: 162 LPYNAEDYIHRIGRTGRAGQAGLAVSLVSNKD 193
>gi|375092115|ref|ZP_09738400.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
gi|374561881|gb|EHR33218.1| hypothetical protein HMPREF9709_01262 [Helcococcus kunzii ATCC
51366]
Length = 540
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 10/151 (6%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K T ++ + + +K +L +L+ + + F NT + +D +
Sbjct: 207 KELTVEKIKQYYLEMDSKMKKEILNRLLGMYNPNLSIVFCNTKR----------MVDQLV 256
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T N+ ++ D+K QR+ +++ FR I++++A+D ARG+DVEN+D+V+NY+
Sbjct: 257 TDLTKLGYNVDALHGDMKQSQRDNVMKRFRASTIEILIATDIAARGLDVENVDLVVNYDL 316
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P Y+HRIGRTAR G++G S T VT+ +
Sbjct: 317 PQQNDYYVHRIGRTARAGKKGISFTFVTSRD 347
>gi|348564128|ref|XP_003467857.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Cavia
porcellus]
Length = 803
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL P ++F + D P L FI
Sbjct: 404 QTMLFSATMTEEVKDLASVSLKNPVRIFVN-----SNTDVAPF--------LRQEFI--- 447
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ HI
Sbjct: 448 --------RIRPNREGDREAIVAALLTRSFTDHVMLFTQTKKQAHRM-----HILLGLLG 494
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 495 -----LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 549
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 550 TIKHYVHRVGRTARAGRAGRSVSLVGEEE 578
>gi|253999448|ref|YP_003051511.1| DEAD/DEAH box helicase [Methylovorus glucosetrophus SIP3-4]
gi|313201470|ref|YP_004040128.1| dead/deah box helicase domain-containing protein [Methylovorus sp.
MP688]
gi|253986127|gb|ACT50984.1| DEAD/DEAH box helicase domain protein [Methylovorus glucosetrophus
SIP3-4]
gi|312440786|gb|ADQ84892.1| DEAD/DEAH box helicase domain protein [Methylovorus sp. MP688]
Length = 459
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S+D +KL + L PKL + S A +D
Sbjct: 185 PKKRQNLMFSATFSNDIKKLSEEFLTNPKLI------------EVARSNAASD------- 225
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++++K+ + K L +L+ + + + F T A RLAR L + +
Sbjct: 226 -------KVTQKVYQLDKDSKDSFLAKLLLESNSEQTIVFTKTKLTASRLARQLVR-EGI 277
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ D +R + ++ F++ K+ +VA+D ARG+D++ + +VIN+E
Sbjct: 278 AADA---------IHGDKSQQERMQALEAFKQGKVTTLVATDVAARGLDIDQLPMVINFE 328
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G GT+++LV E
Sbjct: 329 LPSAPEDYVHRIGRTGRAGASGTAISLVCPEE 360
>gi|432859445|ref|XP_004069111.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Oryzias
latipes]
Length = 771
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL QP ++F + D P L FI
Sbjct: 377 QTMLFSATMTEEVKDLAAVSLKQPVRIFVN-----SNTDVAPF--------LRQEFI--- 420
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + V+ L+ + V+ F T + AHRL LL +
Sbjct: 421 --------RIRPHREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMG----- 467
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L +QR + ++ F+ +ID++VA+D ARG+D++ + VIN+ P
Sbjct: 468 -----LKVGELHGELSQNQRLENLRRFKDDQIDILVATDVAARGLDIDGVKTVINFTMPS 522
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K Y+HR+GRTAR GR G SV+LV E
Sbjct: 523 TVKHYVHRVGRTARAGRSGRSVSLVGESE 551
>gi|359765387|ref|ZP_09269216.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359317208|dbj|GAB22049.1| putative ATP-dependent RNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 553
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 79/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 281 KAELVARILQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 330
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR +ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 331 VAREKALKKFRTGEIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR 390
Query: 220 QGTSVTLVTTHE 231
G +VTLV E
Sbjct: 391 TGIAVTLVDWDE 402
>gi|416998824|ref|ZP_11939493.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
gi|333976977|gb|EGL77836.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ACS-068-V-Sch12]
Length = 432
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q LLFSAT+ P+K+ L+ K + S +P S A +++ I +
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPVSVTAEGKHITLESIDQRV 219
Query: 82 -FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
P E +++L + P + + F N +GA RL+ L
Sbjct: 220 YMMNPEEKTQRLIKMIEDDNPFL------------AIVFCNKREGAIRLSYEL------- 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+
Sbjct: 261 -TAAG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDV 317
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P ++ YIHRIGRT R G G +VT T +
Sbjct: 318 PRDVDYYIHRIGRTGRAGNSGVAVTFATPQD 348
>gi|260941344|ref|XP_002614838.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
gi|238851261|gb|EEQ40725.1| hypothetical protein CLUG_04853 [Clavispora lusitaniae ATCC 42720]
Length = 748
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 108/207 (52%), Gaps = 37/207 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT++ + L QLSL +P +++P +A A+ L F+
Sbjct: 417 QTMLFSATMNTKIQDLIQLSLNKP--VRIMIDPP----------KAAANKLVQEFV---- 460
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+ +K +KP +LY L++ ++ FV+ + AHRL +L +
Sbjct: 461 ---RIRKK-----DEMKPALLYYLLKSVDPSQQSRIVVFVSRKETAHRLRIILGLLG--- 509
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
M ++E++ L +QR + +F+ + +++ +D ARG+D+ I++VINY+
Sbjct: 510 -------MKVSELHGSLTQEQRLNNVNDFKNLTVPVLICTDLAARGLDIPKIEMVINYDM 562
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + + Y+HR+GRTAR GR+G S+T V
Sbjct: 563 PKSHEIYLHRVGRTARAGREGRSITFV 589
>gi|156837514|ref|XP_001642781.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
gi|160358661|sp|A7TS37.1|RRP3_VANPO RecName: Full=ATP-dependent rRNA helicase RRP3
gi|156113348|gb|EDO14923.1| hypothetical protein Kpol_1005p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 506
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 266 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 299
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A R+ L + ++ AT
Sbjct: 300 TLVQTLIVVPGGLKNTYLIYLMNEFIGKTIIVFTRTKANAERITTLANLLEFSAT----- 354
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 355 -----ALHGDLNQNQRTGSLDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 409
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 410 YIHRVGRTARAGRSGKSISLVSQYD 434
>gi|335304982|ref|XP_003360085.1| PREDICTED: probable ATP-dependent RNA helicase DDX27-like [Sus
scrofa]
Length = 421
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 91 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 140
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 141 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 196
>gi|223590197|sp|A5DKW3.2|DRS1_PICGU RecName: Full=ATP-dependent RNA helicase DRS1
gi|190347530|gb|EDK39816.2| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 104/207 (50%), Gaps = 37/207 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT++ + L QLSL +P +V P + A L F+
Sbjct: 379 QTMLFSATMNTKIQDLIQLSLDKP--VRIMVNPP----------KQAASKLVQEFV---- 422
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR---KHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+LKP +LY L+R ++ FV+ + AHRL +L +
Sbjct: 423 --------RIRKREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLG--- 471
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
M ++E++ L +QR + +++FR + +++ +D ARG+D+ I++VIN++
Sbjct: 472 -------MKVSELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDM 524
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + Y+HR+GRTAR GR+G S+T V
Sbjct: 525 PKTHEIYLHRVGRTARAGREGRSITFV 551
>gi|487961|gb|AAB68392.1| Yhr065cp [Saccharomyces cerevisiae]
Length = 543
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 98/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 303 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 336
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + ++ F T A RL+ L + ++ AT
Sbjct: 337 TLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSATA---- 392
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+ P + K
Sbjct: 393 ------LHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKS 446
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 447 YIHRVGRTARAGRSGKSISLVSQYD 471
>gi|403237238|ref|ZP_10915824.1| ATP-dependent RNA helicase [Bacillus sp. 10403023]
Length = 478
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ +LFSAT D E L + P L E N + G +
Sbjct: 173 PTERVTMLFSATFPTDVEALSAKYMKSPTLI-----------------EVKTPNTTKGKV 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
F E +K T VL + + F T QG +DN+
Sbjct: 216 DHFLMKVEEEDKFT---------VLKDITTVENPDSCILFCRTQQG----------VDNL 256
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K + +++ + ++R ++ EF++ K +VA+D ARGIDVENI +VI+++
Sbjct: 257 YRKLTKANYSCGKIHGSMIQEERFTVMDEFKKGKFRYLVATDIAARGIDVENISLVISFD 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + ++Y+HRIGRT R G+ G ++T VT+ E
Sbjct: 317 VPQDKERYVHRIGRTGRAGKTGKAITFVTSTE 348
>gi|348544540|ref|XP_003459739.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Oreochromis
niloticus]
Length = 736
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL QP ++F + D P L F+
Sbjct: 345 QTMLFSATMTEEVKDLAAVSLKQPVRIFVN-----SNTDVAPF--------LRQEFV--- 388
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + V+ L+ + V+ F T + AHRL LL +
Sbjct: 389 --------RIRPHREGDREAVVAALLTRTFQDHVMLFTQTRKQAHRLHILLGLMG----- 435
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L +QR + ++ F+ +ID++VA+D ARG+D++ + VIN+ P
Sbjct: 436 -----LKVGELHGELSQNQRLENLRRFKDEQIDILVATDVAARGLDIDGVKTVINFTMPG 490
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K Y+HR+GRTAR GR G SV+LV E
Sbjct: 491 TVKHYVHRVGRTARAGRSGRSVSLVGESE 519
>gi|224593278|ref|NP_060365.7| probable ATP-dependent RNA helicase DDX27 [Homo sapiens]
gi|29427946|sp|Q96GQ7.2|DDX27_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX27; AltName:
Full=DEAD box protein 27
gi|116497013|gb|AAI26288.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|119596072|gb|EAW75666.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_b [Homo
sapiens]
gi|120660308|gb|AAI30276.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|219519028|gb|AAI44126.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [Homo sapiens]
gi|313883552|gb|ADR83262.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 796
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 466 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
>gi|294791601|ref|ZP_06756749.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
gi|294456831|gb|EFG25193.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 6_1_27]
Length = 432
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q LLFSAT+ P+K+ L+ K + S +P S A +++ I +
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPVSVTAEGKHITLESIDQRV 219
Query: 82 -FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
P E +++L + P + + F N +GA RL+ L
Sbjct: 220 YMMNPEEKTQRLIKMIEDDNPFL------------AIVFCNKREGAIRLSYEL------- 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+
Sbjct: 261 -TAAG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDV 317
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P ++ YIHRIGRT R G G +VT T +
Sbjct: 318 PRDVDYYIHRIGRTGRAGNSGVAVTFATPQD 348
>gi|395213916|ref|ZP_10400373.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
gi|394456540|gb|EJF10826.1| DEAD/DEAH box helicase [Pontibacter sp. BAB1700]
Length = 479
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 103/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT+ L Q L QP+ NL+
Sbjct: 158 PAERQTLLFSATMPKKIRDLSQQILQQPEEI----------------------NLA---- 191
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + ++L N K +L LIR+ +Q ++ F + +++ R L +
Sbjct: 192 --ISKPAEGIDQRLYLTYDNQKLPLLEHLIRELEVQNMIIFTSRKSNVNQIVRSLRKMGF 249
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
A + SDL ++R K +Q F+ RK ++VA+D L+RGID++++ V+N+
Sbjct: 250 EAEG----------IMSDLTQEEREKALQGFKNRKYQILVATDILSRGIDIDSLSHVVNF 299
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HR+GRTAR G ++T V ++
Sbjct: 300 DMPQDAEDYVHRVGRTARAASTGMAITFVNEND 332
>gi|421467479|ref|ZP_15916098.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
gi|400233671|gb|EJO63196.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC BAA-247]
Length = 487
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|67967779|dbj|BAE00372.1| unnamed protein product [Macaca fascicularis]
Length = 764
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 434 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 483
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 484 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 539
>gi|209517599|ref|ZP_03266438.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
gi|209502012|gb|EEA02029.1| DEAD/DEAH box helicase domain protein [Burkholderia sp. H160]
Length = 510
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 212 PKERQTLLFSATFSGEIKKL-----------------AATYLRNPQTIEVARSN------ 248
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T +++ + + K + +LIR+ ++ V+ F N+ GA RLAR L V
Sbjct: 249 ---STATNVTQVVYEVAEGDKTGAVVKLIRERGLKQVIVFCNSKIGASRLARSLERDGVV 305
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +++ +VA+D ARG+D+ + VIN++
Sbjct: 306 ATA----------IHGDRSQSERMQALDAFKRGEVEALVATDVAARGLDIAELPAVINFD 355
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 356 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 387
>gi|40225538|gb|AAH11927.2| DDX27 protein, partial [Homo sapiens]
gi|48257213|gb|AAH16060.2| DDX27 protein, partial [Homo sapiens]
Length = 767
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 103/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL P ++F + D P L FI
Sbjct: 368 QTMLFSATMTDEVKDLASVSLKNPVRIFVN-----SNTDVAPF--------LRQEFI--- 411
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ LL +
Sbjct: 412 --------RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMG----- 458
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 459 -----LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 513
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 514 TIKHYVHRVGRTARAGRAGRSVSLVGEDE 542
>gi|209545470|ref|YP_002277699.1| DEAD/DEAH box helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209533147|gb|ACI53084.1| DEAD/DEAH box helicase domain protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 79/128 (61%), Gaps = 10/128 (7%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L ++R+ A + F T Q A LAR L+ T G + A ++ D +R+
Sbjct: 252 LLAVLRREAGGRTMVFTRTKQAADALARTLN------TGG----VTAAALHGDHGQVRRD 301
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+ + +FRR ++ ++VA+D +ARGIDVE++ +V+N++ P+ + YIHRIGRTAR GR+GT+
Sbjct: 302 RTLDDFRRGRLLVLVATDVMARGIDVEDVALVVNFDIPEQPETYIHRIGRTARAGRRGTA 361
Query: 224 VTLVTTHE 231
++L E
Sbjct: 362 LSLCDPAE 369
>gi|366994708|ref|XP_003677118.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
gi|342302986|emb|CCC70763.1| hypothetical protein NCAS_0F02790 [Naumovozyma castellii CBS 4309]
Length = 502
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 262 LFSATMTSKIDKLQRASLTNP--------------------------VKCAVSNKYQTVD 295
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R++ L + ++
Sbjct: 296 TLVQTLIVVPGGLKDTYLVYLLNEFIGKTTIIFTRTKANAERISGLCNLLE--------- 346
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
N ++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 347 -FNATALHGDLNQNQRTGALDLFKAGRKSILVATDVAARGLDIPSVDIVINYDIPVDSKS 405
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 406 YIHRVGRTARAGRSGKSISLVSQYD 430
>gi|336310213|ref|ZP_08565185.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
gi|335865943|gb|EGM70934.1| ATP-dependent RNA helicase RhlE [Shewanella sp. HN-41]
Length = 470
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 109/212 (51%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S +++ QL+ L + VE + T N ++ +
Sbjct: 176 PKQRQNLMFSATFS---DEIRQLA---KGLVNNPVEISVT-----------PRNAAATTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + S+K +L QLI++ Q VL F T GA+RLA+ L
Sbjct: 219 KQWVCPVDKSQKSA---------LLIQLIKQQDWQQVLVFSRTKHGANRLAKNLEE---- 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG K A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 266 ----AGIKA--AAIHGNKSQTARTKALADFKTGQVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGASGQAVSLVSSEE 351
>gi|189342956|gb|ACD91989.1| DEAD box polypeptide 27 [Homo sapiens]
gi|313883628|gb|ADR83300.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 [synthetic construct]
Length = 765
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 540
>gi|395777935|ref|ZP_10458448.1| hypothetical protein MCU_00149 [Bartonella elizabethae Re6043vi]
gi|423715861|ref|ZP_17690082.1| hypothetical protein MEE_01279 [Bartonella elizabethae F9251]
gi|395418244|gb|EJF84571.1| hypothetical protein MCU_00149 [Bartonella elizabethae Re6043vi]
gi|395429163|gb|EJF95237.1| hypothetical protein MEE_01279 [Bartonella elizabethae F9251]
Length = 471
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 75/144 (52%), Gaps = 10/144 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT E+++KL T+ K VL +L+ A V+ F T GA + R L I + T
Sbjct: 231 TTAVEIAQKLYCVPTSEKKNVLSKLLTNPAFNSVIVFTRTKHGADAVTRHLAKIGYLVTT 290
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
G K A R ++ FR R + ++VA+D ARGID+ I VINY+ PD
Sbjct: 291 IHGNKSQGA----------RQSALKAFRERSVQILVATDIAARGIDIPGISHVINYDLPD 340
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G ++TL
Sbjct: 341 EAESYVHRIGRTGRNGACGEALTL 364
>gi|119596074|gb|EAW75668.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 27, isoform CRA_d [Homo
sapiens]
Length = 763
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 466 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
>gi|398873687|ref|ZP_10628940.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398198842|gb|EJM85794.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
Length = 446
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S D L AG P + E
Sbjct: 169 LANIYRALPKKRQTLLFSATFSDDIRLL-----------------AGQMLNDPLTIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+RK + VL F T G
Sbjct: 212 RNVAANTVKQW---------IVTVDKKRKPELFVHLMRKGKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPMVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|119504065|ref|ZP_01626146.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
gi|119460068|gb|EAW41162.1| DEAD/DEAH box helicase-like protein [marine gamma proteobacterium
HTCC2080]
Length = 437
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S D L + + P VE + T P +S
Sbjct: 176 PNKRQNLMFSATFSEDIRDLAKTIVNNP------VEISVT----PRNS------------ 213
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + N K +L +LI +H + VL F T +GA+RLA L
Sbjct: 214 ----TAVSVTQWIHPVDKNQKRHLLVELINQHNWEQVLVFSRTKRGANRLAEFLDK---- 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KG + A ++ + R + + EF+ K+ ++VA+D ARG+D+E + V+N +
Sbjct: 266 --KG----IQAAAIHGNKSQGARTRALSEFKSGKLRVLVATDIAARGLDIEQLPQVVNLD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV+ E
Sbjct: 320 LPEVAQDYVHRIGRTGRAGATGQAISLVSADE 351
>gi|114682555|ref|XP_001166506.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 5 [Pan
troglodytes]
Length = 796
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 466 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 515
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 516 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 571
>gi|109091647|ref|XP_001099400.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Macaca
mulatta]
gi|355563050|gb|EHH19612.1| Putative ATP-dependent RNA helicase DDX27 [Macaca mulatta]
gi|355784407|gb|EHH65258.1| Putative ATP-dependent RNA helicase DDX27 [Macaca fascicularis]
Length = 763
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 433 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 482
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 483 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 538
>gi|387902864|ref|YP_006333203.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
gi|387577756|gb|AFJ86472.1| ATP-dependent RNA helicase [Burkholderia sp. KJ006]
Length = 493
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N
Sbjct: 190 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K I +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQI----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|225556564|gb|EEH04852.1| ATP-dependent rRNA helicase RRP3 [Ajellomyces capsulatus G186AR]
Length = 485
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 12 MWDTFLTYPSRPQR-LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAG 70
+ D L R +R LFSAT+S E L + SL P L S+
Sbjct: 222 ILDKILKVLPRERRTYLFSATMSSKVESLQRASLSNP-LRVSISS--------------- 265
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
K+ T A L + K + L L+ ++A Q + F T RLA
Sbjct: 266 ---------NKYQTVATLLQSYLFIPHKYKDVYLVYLLNEYAGQSAIVFTRTVNETQRLA 316
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
LL + G G+ ++ L R + +FR R D++VA+D ARG+D+
Sbjct: 317 ILLRAL------GFGS----IPLHGQLSQSSRLGALSKFRSRSRDILVATDVAARGLDIP 366
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++DVV+N++ P + K YIHR+GRTAR G+ G + ++VT ++
Sbjct: 367 SVDVVLNFDLPSDSKTYIHRVGRTARAGKSGHAFSIVTQYD 407
>gi|103487431|ref|YP_616992.1| DEAD/DEAH box helicase [Sphingopyxis alaskensis RB2256]
gi|98977508|gb|ABF53659.1| DEAD/DEAH box helicase-like protein [Sphingopyxis alaskensis
RB2256]
Length = 459
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PSR Q L FSAT+ + L L P T V P Q T++E +
Sbjct: 178 PSRRQNLFFSATMPKEIAGLADQFLNDP--VTVSVAP------QATTAEK---------V 220
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+F T E EK +L+ +I+ + L F T GA R+ R L
Sbjct: 221 RQFATFVEQKEKQA---------LLHHVIKTSDIDRALIFTRTKHGADRVVRHL------ 265
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
KGAG + ++ + QR +Q FR ++ L+VA+D ARGIDV + VIN+E
Sbjct: 266 --KGAG--IEAFAIHGNKSQAQRTAALQAFRSGQVRLLVATDIAARGIDVSGVSHVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ ++Y+HRIGRTAR G +G +++ + E
Sbjct: 322 IPNVPEQYVHRIGRTARAGAEGIAISFIAPDE 353
>gi|297707298|ref|XP_002830447.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 isoform 1
[Pongo abelii]
Length = 765
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 540
>gi|134296504|ref|YP_001120239.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
vietnamiensis G4]
gi|134139661|gb|ABO55404.1| DEAD/DEAH box helicase domain protein [Burkholderia vietnamiensis
G4]
Length = 512
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N
Sbjct: 212 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSN------ 248
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 249 ---STNANVTQIVYDVAEGDKQAAVVQLLRGRGLKQVIVFCNSKIGASRLARNLERDGVV 305
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K I +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 306 ASAIHGDKSQI----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 355
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 356 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 387
>gi|398835789|ref|ZP_10593146.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
gi|398215227|gb|EJN01792.1| DNA/RNA helicase, superfamily II [Herbaspirillum sp. YR522]
Length = 487
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL AG+ P + E N
Sbjct: 195 PKKRQNLMFSATFSPEIKKL-----------------AGSFQNNPVTIEVARSN------ 231
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ + + K + +IR+ ++ V+ F NT GA RL+R ++N
Sbjct: 232 ---ATAERVTQTIYRVDESAKADAVSFIIRERNLKQVIVFSNTKIGASRLSR---QLENE 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K + ++ D ++R ++ F++ +I+++VA+D ARG+D+ ++ VINY+
Sbjct: 286 GVKASA-------IHGDKTQNERMAALEAFKQGQIEVLVATDVAARGLDITDLPCVINYD 338
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTL 226
P N + Y+HRIGRT R G G +++L
Sbjct: 339 MPYNAEDYVHRIGRTGRAGASGDAISL 365
>gi|270159019|ref|ZP_06187675.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
gi|289166145|ref|YP_003456283.1| ATP-dependent RNA helicase deaD (cold-shock DEAD-box protein A)
[Legionella longbeachae NSW150]
gi|269987358|gb|EEZ93613.1| cold-shock DEAD box protein A [Legionella longbeachae D-4968]
gi|288859318|emb|CBJ13253.1| putative ATP-dependent RNA helicase deaD (cold-shock DEAD-box
protein A) [Legionella longbeachae NSW150]
Length = 569
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 20/200 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
+S PEK Q+ LF + + + A T P + E A+ T + ++
Sbjct: 174 MSKLPEK-KQIGLFSATMPHRIRQIANTYLHNPAAIEIRAET---------ATVKSIEQR 223
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
S + K L +++ QGV+ FV T +A +L +
Sbjct: 224 FLFASGHQKYDALLRVLAVEDYQGVIVFVRTKSSTEEVAEILQQ----------QGLRAM 273
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ D+ R +II +FR+ ID++VA+D ARG+DVE + VINY+ P + + Y+HRI
Sbjct: 274 AIHGDITQALRERIIAQFRQGAIDILVATDVAARGLDVERVTHVINYDLPHDNETYVHRI 333
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR G ++ VT E
Sbjct: 334 GRTGRAGRSGVAILFVTPKE 353
>gi|221043088|dbj|BAH13221.1| unnamed protein product [Homo sapiens]
Length = 765
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 540
>gi|254251800|ref|ZP_04945118.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
gi|124894409|gb|EAY68289.1| DEAD/DEAH box helicase-like [Burkholderia dolosa AUO158]
Length = 511
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N
Sbjct: 212 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSN------ 248
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R+ ++ V+ F N+ GA RLAR L V
Sbjct: 249 ---STNANVTQIVYDVAEGDKQAAVVQLLRERGLKQVIVFCNSKIGASRLARQLERDGVV 305
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +++ +VA+D ARG+D+ + VIN++
Sbjct: 306 ASAIHGDKSQL----------ERMQALDAFKRGEVEALVATDVAARGLDIAELPAVINFD 355
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 356 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 387
>gi|325000518|ref|ZP_08121630.1| DEAD/DEAH box helicase domain protein [Pseudonocardia sp. P1]
Length = 547
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 10/115 (8%)
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176
+ F T + A R+A D++A +G A V+ DL R + ++ FR K+D+
Sbjct: 323 MIFTRTKRTAQRVA------DDLAERG----FAAAAVHGDLGQGAREQALRAFRAEKVDV 372
Query: 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+VA+D ARGIDV + V+NY+ P++ K Y+HRIGRT R GR+G +VTLV E
Sbjct: 373 LVATDVAARGIDVTGVTHVVNYQCPEDSKTYVHRIGRTGRAGREGVAVTLVDWDE 427
>gi|320169870|gb|EFW46769.1| DEAD-box ATP-dependent RNA helicase 1 [Capsaspora owczarzaki ATCC
30864]
Length = 866
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 122/286 (42%), Gaps = 85/286 (29%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSV------VEPAG------------TGDTQPT 65
++LLFSATL+++PEK+ L L P+ F + V+P T D Q
Sbjct: 512 RKLLFSATLTNNPEKIAALHLVFPRYFVAAPNATLSVKPVAGAGADAATAMDTTADGQEP 571
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQ-----LIRKHAMQGVLCFV 120
+A DN + +FT PA L++++ C KPL L Q LIR A L
Sbjct: 572 LFDADGDNAA-----RFTLPATLTQEMIVCQLADKPLALAQRLYGTLIR--AAGKTLPAD 624
Query: 121 NTAQGAHRLARLLHHIDN----------VATKGAGTKMNIA------------------- 151
+ A R++ D+ + K GT ++ A
Sbjct: 625 DEAAATTTPHRVVFASDDEEDADPSNEEASAKKRGTPLSRAIKALPQALVFTASVESTHR 684
Query: 152 ----------EVYSDLKFDQRNKIIQEF----------------RRRKIDLVVASDNLAR 185
+ +L+ Q ++ EF R ++ +++ SD +AR
Sbjct: 685 LALLLRNLLKQALPELRDIQLGSLVAEFSSSLSKDDRGKMLNRFRTNQVHVLICSDAMAR 744
Query: 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
G+D+EN+ VINY+ P K Y+HR+GRTAR GR G ++TL+ + E
Sbjct: 745 GMDIENVAEVINYDVPVYFKTYVHRVGRTARAGRSGQALTLLRSEE 790
>gi|50838814|ref|NP_001002869.1| probable ATP-dependent RNA helicase DDX27 [Danio rerio]
gi|49618925|gb|AAT68047.1| DEAD box polypeptide 27 [Danio rerio]
Length = 776
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 104/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT+S + + L +SL QP ++F + D P L F+
Sbjct: 380 QTMLFSATMSEEVKDLASVSLKQPVRIFVN-----SNTDVAPY--------LRQEFV--- 423
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ LL +
Sbjct: 424 --------RIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMG----- 470
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 471 -----LKVGELHGNLSQTQRLESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 525
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+K Y+HR+GRTAR G+ G SV+LV E
Sbjct: 526 TVKHYVHRVGRTARAGKVGRSVSLVGETE 554
>gi|429740086|ref|ZP_19273797.1| DEAD/DEAH box helicase [Prevotella saccharolytica F0055]
gi|429154363|gb|EKX97096.1| DEAD/DEAH box helicase [Prevotella saccharolytica F0055]
Length = 447
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 102/209 (48%), Gaps = 40/209 (19%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q ++FSAT+ P K+ QL+ L S VE
Sbjct: 179 PSTCQTIMFSATM---PPKIEQLA---KTLLKSPVE----------------------IK 210
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PAE + ++ C K L L Q I + + V+ F Q + R L +
Sbjct: 211 LAVSKPAEKIVQQAYLCHEPQK-LRLLQHIFRQQHKRVIIFSGKKQKVKEINRALLQM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
N E++SDL ++RN ++ F+ D++VA+D LARGID+++I +VINY
Sbjct: 268 --------HTNSDEMHSDLTQEERNDVMFRFKSGATDVLVATDILARGIDIDDITMVINY 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P +++ Y+HRIGRTAR R G ++TL+
Sbjct: 320 DVPHDVEDYVHRIGRTARAERDGVAITLI 348
>gi|32425487|gb|AAH09304.2| DDX27 protein, partial [Homo sapiens]
Length = 769
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 439 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 488
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 489 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 544
>gi|345330125|ref|XP_003431468.1| PREDICTED: probable ATP-dependent RNA helicase DDX52-like
[Ornithorhynchus anatinus]
Length = 840
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 99/207 (47%), Gaps = 39/207 (18%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
+R +FSAT +HD E+ +L+L DN+ S IG
Sbjct: 584 RRAMFSATFAHDVEQWCKLNL---------------------------DNIISVSIGARN 616
Query: 84 TPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ AE E+ L S K L + L++K VL FV Q R L H +
Sbjct: 617 SAAETVEQELLFVGSETGKLLAMRDLVKKGFSPPVLVFV---QSIERAKELFHELIYEG- 672
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+N+ ++++ QR+ +Q FR KI +++ + LARGID + +++VINY+ P
Sbjct: 673 ------INVDVIHAERTQQQRDNTVQSFRAGKIWVLICTALLARGIDFKGVNLVINYDFP 726
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +YIHRIGRT R G +G +VT T
Sbjct: 727 TSAVEYIHRIGRTGRAGHKGKAVTFFT 753
>gi|344279740|ref|XP_003411645.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase
DDX27-like [Loxodonta africana]
Length = 822
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 492 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 541
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ +K Y+HR+GRTAR GR G SV+LV E
Sbjct: 542 ILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGRSVSLVGEEE 597
>gi|326527477|dbj|BAK08013.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 614
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 36/208 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT+ KL Q L P +V+ G D + L+ G
Sbjct: 279 PPKRQTLMFSATMPPWIRKLMQKYLKDP----VIVDLVGEDDQK----------LAEG-- 322
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDN 138
+S + KP VL QLI+ HA G + F T + A RL+ +
Sbjct: 323 --------ISLLSIATENHAKPAVLAQLIQDHAKGGKCIVFTQTKRDADRLSYTM----- 369
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
G + ++ D+ QR + +Q FR + ++A+D ARG+D+ N+D+VI+Y
Sbjct: 370 ------GRTVQCQALHGDITQGQRERTLQGFREGRFSTLIATDVAARGLDIPNVDLVIHY 423
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTL 226
E P+N + ++HR GRT R G++G ++ +
Sbjct: 424 ELPNNSEIFVHRSGRTGRAGKKGIAIVM 451
>gi|326334210|ref|ZP_08200433.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
gi|325948001|gb|EGD40118.1| ATP-dependent RNA helicase DeaD [Nocardioidaceae bacterium Broad-1]
Length = 482
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP ++ +L++ V+ F T + A R+A D++A +G + ++ D++
Sbjct: 230 KPEMIGRLLQCEDHDKVVVFARTKRQAQRVA------DDLAERG----FPASPLHGDMQQ 279
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R +++Q+FR K++++VA+D ARGIDV + V+NY PD+ K Y+HRIGRT R G
Sbjct: 280 AARERVMQKFRDGKVEVLVATDVAARGIDVTGVSHVVNYTTPDDEKTYVHRIGRTGRAGA 339
Query: 220 QGTSVTLV 227
G +VTLV
Sbjct: 340 SGVAVTLV 347
>gi|228469533|ref|ZP_04054526.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
uenonis 60-3]
gi|228308883|gb|EEK17558.1| ATP-dependent RNA helicase, dead/deah box family [Porphyromonas
uenonis 60-3]
Length = 436
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 106/221 (47%), Gaps = 42/221 (19%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFT-SVVEPAGTGDTQPTSSEAG 70
+ + + P Q ++FSAT+ + KL + L P L +V +P
Sbjct: 170 IMEIYKALPEDCQHVMFSATMPKEILKLSESILVDPVLVELAVAKP-------------- 215
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIR--KHAMQGVLCFVNTAQGAHR 128
P + + C K ++ L + + + F T H
Sbjct: 216 --------------PKSIMQTAYICYDAQKLPIIRSLFANPESEVSRTIIFAGTKATVHA 261
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
LA+ L + +AE++SDL ++R +++++FR +I ++VA+D +ARGID
Sbjct: 262 LAQTLTR----------DGLPVAEMHSDLSQERREEVLRDFRMGRIKVLVATDIVARGID 311
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGR-QGTSVTLVT 228
+++I VVINYE P + + Y+HRIGRTARG +G ++TLV+
Sbjct: 312 IDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITLVS 352
>gi|221211662|ref|ZP_03584641.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
gi|221169023|gb|EEE01491.1| ATP-dependent RNA helicase RhlE [Burkholderia multivorans CGD1]
Length = 495
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|187479233|ref|YP_787258.1| ATP-dependent RNA helicase [Bordetella avium 197N]
gi|115423820|emb|CAJ50371.1| putative ATP-dependent RNA helicase [Bordetella avium 197N]
Length = 477
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S++ KL + L QP E A N ++
Sbjct: 194 PPQRQGLLFSATFSNEIRKLGRSYL-----------------NQPVEIEVAARNATA--- 233
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +++ ++T K + L++ ++ V+ F NT G RLAR L +D V
Sbjct: 234 ---DTVTQIAYQMTG---EAKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLE-LDGV 286
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D R K ++ F+ +++++VA+D ARG+DV + VINY+
Sbjct: 287 KAES---------IHGDKSQADRMKALEAFKAGELEVLVATDVAARGLDVAGVPCVINYD 337
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G ++ L T E
Sbjct: 338 LPYNAEDYVHRIGRTGRAGASGEAIALFTPEE 369
>gi|428219550|ref|YP_007104015.1| DEAD/DEAH box helicase [Pseudanabaena sp. PCC 7367]
gi|427991332|gb|AFY71587.1| DEAD/DEAH box helicase domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 11/149 (7%)
Query: 84 TPAELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TP + ++ +L K L ++ A + FV T A RL +L D
Sbjct: 211 TPDRIEQQAYVVPRHLSKEEALLPILDLEAPHASIIFVRTKDSARRLTSMLQEYD----- 265
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
++ E + +L QR +++ FR +++ LVVA+D ARG+D++++ VIN + PD
Sbjct: 266 -----YSVDEYHGNLTQVQRESLLRRFRNQQVKLVVATDIAARGLDIDSLTHVINLDIPD 320
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++KY+HRIGRT R GR G ++ ++T+ E
Sbjct: 321 DLEKYVHRIGRTGRAGRTGKAIAILTSRE 349
>gi|374600581|ref|ZP_09673583.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|423325817|ref|ZP_17303657.1| hypothetical protein HMPREF9716_03014 [Myroides odoratimimus CIP
103059]
gi|373912051|gb|EHQ43900.1| DEAD/DEAH box helicase domain protein [Myroides odoratus DSM 2801]
gi|404605382|gb|EKB04983.1| hypothetical protein HMPREF9716_03014 [Myroides odoratimimus CIP
103059]
Length = 420
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 101/216 (46%), Gaps = 36/216 (16%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F P++ Q L FSAT+ + +KL + PK P SS AG
Sbjct: 184 FTKIPTKRQTLFFSATMPPEIKKLVMQLVRNPKEV----------HVSPVSSTAGTIEQG 233
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
F AE +KL +L+ +++ ++Q L F T GA RLA+ L
Sbjct: 234 VYF-------AEKDDKLD---------LLFSILKDASIQRSLVFTRTKFGADRLAKKL-- 275
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
++ A ++ + + R + + +F+ KI +++A+D ARGID+E + V
Sbjct: 276 --------VSMGLSAAAIHGNKSQNARQRALSDFKANKIRVLIATDIAARGIDIEELPHV 327
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+NYE P+ + Y+HRIGRT R G G +V+ T E
Sbjct: 328 VNYELPNIPESYVHRIGRTGRAGASGVAVSFCGTDE 363
>gi|325295336|ref|YP_004281850.1| DEAD/DEAH box helicase [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325065784|gb|ADY73791.1| DEAD/DEAH box helicase domain protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 425
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 105/217 (48%), Gaps = 46/217 (21%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN-LSSGF 78
P Q LLFSAT+ ++ KL DN L SG+
Sbjct: 183 PREKQTLLFSATMPYEIRKL-------------------------------IDNYLKSGY 211
Query: 79 ----IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+GK ++ +++ + K L +L+++H + FV T + A + + L
Sbjct: 212 KTIKVGKNLITPKVHQRIIFVKSEDKLKALEKLLKEHQGTSTIVFVKTKRDAAEIEKELQ 271
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+N ++ DL QR +++ F+ K+ +VA+D ARGID++++ +
Sbjct: 272 K----------RSINARAIHGDLSQRQRENVMKAFKEGKVKTLVATDVAARGIDIKDVGL 321
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINYE P+N + Y+HRIGRT R GR+GT+++LV +E
Sbjct: 322 VINYELPENPESYVHRIGRTGRAGREGTAISLVADNE 358
>gi|241767199|ref|ZP_04764950.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
gi|241362168|gb|EER58246.1| DEAD/DEAH box helicase domain protein [Acidovorax delafieldii 2AN]
Length = 489
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 100/214 (46%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P + LLFSAT S + ++L S Q + V P T T
Sbjct: 177 ILSYLPKQRTTLLFSATFSPEIKRLAG-SYLQDPITIEVARPNETAST------------ 223
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ + + + + K ++Q+++ ++ FVN+ G RLAR L
Sbjct: 224 -------------VEQHFYSANDDDKRHAIHQVLKSRGIKQAFIFVNSKLGCARLARSLE 270
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ A ++ D D+R K + F++ +DL+V +D ARG+D++++
Sbjct: 271 R----------EGLKTAALHGDKSQDERLKALDAFKQGAVDLLVCTDVAARGLDIKDVPA 320
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VTLV+
Sbjct: 321 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|421477961|ref|ZP_15925746.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
gi|400225606|gb|EJO55753.1| DEAD/DEAH box helicase [Burkholderia multivorans CF2]
Length = 487
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|95928808|ref|ZP_01311554.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
gi|95135153|gb|EAT16806.1| DEAD/DEAH box helicase-like [Desulfuromonas acetoxidans DSM 684]
Length = 426
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D ++L L P L E N +S
Sbjct: 178 PKKRQNLLFSATFSDDIKRLADSLLNTPTLI-----------------EVARRNTAS--- 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ + + + K +L +I Q VL F T +GA+RLA+ L
Sbjct: 218 ------EQVEQSVHLIEKSRKRELLSHMIGSQNWQQVLVFTRTKRGANRLAQQLEKDGLK 271
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+T G K A R K + +F+ + ++VA+D ARG+D++ + V+NYE
Sbjct: 272 STAIHGNKTQGA----------RTKALADFKAGRARVLVATDIAARGLDIDQLPNVVNYE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD + Y+HRIGRT R GR G +V+LV + E
Sbjct: 322 LPDVPEDYVHRIGRTGRAGRDGKAVSLVCSEE 353
>gi|363750628|ref|XP_003645531.1| hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889165|gb|AET38714.1| Hypothetical protein Ecym_3217 [Eremothecium cymbalariae
DBVPG#7215]
Length = 486
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT++ +KL + SL P + K+ T
Sbjct: 246 LFSATMTSKIDKLQRASLTNP--------------------------VKCSVSNKYQTVD 279
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
L + L LK L L+ + + + F T A R++ L + ++ AT
Sbjct: 280 TLIQTLMVVPGGLKNTYLIYLLNEFIGKSTIVFTRTKANAERISGLCNLLEFSATA---- 335
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++ DL +QR + F+ + ++VA+D ARG+D+ ++D+VINY+ P + K
Sbjct: 336 ------LHGDLNQNQRTGALDLFKAGRRSILVATDVAARGLDIPSVDIVINYDIPVDSKS 389
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHR+GRTAR GR G S++LV+ ++
Sbjct: 390 YIHRVGRTARAGRSGKSISLVSQYD 414
>gi|347359736|ref|YP_386648.2| DEAD/DEAH box helicase [Desulfovibrio alaskensis G20]
gi|342906268|gb|ABB36953.2| DEAD/DEAH box helicase domain protein [Desulfovibrio alaskensis
G20]
Length = 528
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 64/96 (66%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D +AT + ++ +L QR++++ FR+ ID++VA+D ARGIDVEN++ V
Sbjct: 257 VDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVATDVAARGIDVENVEAV 316
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+NY+ P++++ Y+HRIGRT R GR G + T V+ E
Sbjct: 317 VNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGRE 352
>gi|167537882|ref|XP_001750608.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770904|gb|EDQ84581.1| predicted protein [Monosiga brevicollis MX1]
Length = 395
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 104/213 (48%), Gaps = 34/213 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT + E L ++SL L+ V + EA ADN+ G+I
Sbjct: 125 PKKRQTLLFSATQTRKVEDLARISLKGEPLYVGVND---------QDEEATADNIEQGYI 175
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C + + L+L+ ++++ + V+ F+++ A LL++ID
Sbjct: 176 --------------ICPADKRFLLLFTFLKRNLKKKVMVFLSSCNSVKFHAELLNYID-- 219
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ + +++ K +R EF + +++ +D ARG+D+ N+D ++ Y+
Sbjct: 220 --------IPVLDIHGKQKQGKRTTTFFEFCNAEHGILLCTDVAARGLDISNVDWIVQYD 271
Query: 200 APDNIKKYIHRIGRTARG-GRQGTSVTLVTTHE 231
PD+ + YIHR+GRTARG + G ++ + E
Sbjct: 272 PPDDPRDYIHRVGRTARGTDKSGKALLFLLPEE 304
>gi|389681720|ref|ZP_10173064.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
gi|388554255|gb|EIM17504.1| putative ATP-dependent RNA helicase [Pseudomonas chlororaphis O6]
Length = 444
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D + P + Q LLFSAT S L AG P S E N
Sbjct: 171 DIYAALPKKRQTLLFSATFSDAIRLL-----------------AGQMLNDPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ + T KP + L+RK+ + VL F T G
Sbjct: 214 VAANTVKQW---------VVTVDKRRKPELFSHLLRKNRWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + + G +N ++ D R + + F+ +I ++VA+D ARG+D+E++
Sbjct: 257 --VDALVERLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGSTGEAISLVCADE 352
>gi|91782534|ref|YP_557740.1| ATP-dependent RNA helicase 2 [Burkholderia xenovorans LB400]
gi|91686488|gb|ABE29688.1| Putative ATP-dependent RNA helicase 2 [Burkholderia xenovorans
LB400]
Length = 491
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 104/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N ++ +
Sbjct: 190 PKERQTLLFSATFSGEIKKL-----------------AATYLRDPQTIEVARSNSTATNV 232
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ E++E T + + QLIR+ ++ V+ F N+ GA RL+R L +
Sbjct: 233 RQIVY--EVAEGDKTGA-------VVQLIRERGLKQVIVFCNSKIGASRLSRSLERDGVI 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D ++R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRSQNERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 365
>gi|407648142|ref|YP_006811901.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407311026|gb|AFU04927.1| ATP-dependent RNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 515
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 78/132 (59%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 256 KSELIAKVLQAEGRGATMVFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 305
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR+ ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 306 IAREKALTKFRKGAIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 365
Query: 220 QGTSVTLVTTHE 231
G +VTL+ E
Sbjct: 366 TGVAVTLIDWDE 377
>gi|374384807|ref|ZP_09642324.1| hypothetical protein HMPREF9449_00710 [Odoribacter laneus YIT
12061]
gi|373227611|gb|EHP49924.1| hypothetical protein HMPREF9449_00710 [Odoribacter laneus YIT
12061]
Length = 397
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 36/216 (16%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L P++ Q LLFSAT+ P+ + LS S+++ + P SS
Sbjct: 196 LLKLPAQHQTLLFSATM---PQSIAALS-------ASILKKPVRVEVNPVSSPVDTVEQC 245
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
F+ K K +L QL+ + + VL F T GA
Sbjct: 246 IYFVEKMK----------------KKNLLVQLLGQDIKKSVLVFSRTKHGA--------- 280
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
DN+A + + ++ + QR + + F+ K+ ++VA+D ARGID++ +++V
Sbjct: 281 -DNIARSLSKEGIRTESIHGNKSQGQRQRALNAFKSGKVKVMVATDIAARGIDIDRLEMV 339
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ PD + Y+HRIGRT R G GT++T + E
Sbjct: 340 INYDLPDTAETYVHRIGRTGRAGNTGTALTFCSPDE 375
>gi|226229135|ref|YP_002763241.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
gi|226092326|dbj|BAH40771.1| ATP-dependent DEAD-box RNA helicase DeaD [Gemmatimonas aurantiaca
T-27]
Length = 594
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQ--GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160
V Y + R H M + ++ Q A R +D ++ + ++ L D
Sbjct: 237 VAYVVSRAHKMPALARVLDIEQPTSAIVFCRTRTEVDELSETLTARGLRAEALHGGLSQD 296
Query: 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220
QR++++Q+FR RK+DL++A+D ARG+DV+++ V+N++ P + + Y+HRIGRT R GR+
Sbjct: 297 QRDRVMQKFRARKVDLLIATDVAARGLDVKHVSHVVNFDVPVDAETYVHRIGRTGRAGRE 356
Query: 221 GTSVTLVTTHE 231
G +VT E
Sbjct: 357 GVAVTFAEPRE 367
>gi|221199585|ref|ZP_03572629.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
gi|221205515|ref|ZP_03578530.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221174353|gb|EEE06785.1| dead/deah box helicase [Burkholderia multivorans CGD2]
gi|221180870|gb|EEE13273.1| dead/deah box helicase [Burkholderia multivorans CGD2M]
Length = 487
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|374986821|ref|YP_004962316.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
gi|297157473|gb|ADI07185.1| ATP-dependent RNA helicase [Streptomyces bingchenggensis BCW-1]
Length = 587
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 33/208 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q +LFSAT+ P ++ L+ + + S QPT A A +
Sbjct: 152 PAKRQTMLFSATM---PGQVISLA----RRYMS----------QPTHIRATAPD------ 188
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ T A +++ + + KP V+ ++++ V+ F T + A +A D +
Sbjct: 189 DEGATVANITQHVFRAHSLDKPEVVARVLQAEGRGLVMIFCRTKRTAADIA------DQL 242
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A +G + V+ DL R + ++ FR K+D++VA+D ARGIDVE + VINY+
Sbjct: 243 AHRGFAS----GAVHGDLGQGAREQALRAFRNGKVDVLVATDVAARGIDVEGVTHVINYQ 298
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
+P++ K Y+HRIGRT R G GT++TLV
Sbjct: 299 SPEDEKTYLHRIGRTGRAGASGTAITLV 326
>gi|161524137|ref|YP_001579149.1| DEAD/DEAH box helicase [Burkholderia multivorans ATCC 17616]
gi|160341566|gb|ABX14652.1| DEAD/DEAH box helicase domain protein [Burkholderia multivorans
ATCC 17616]
Length = 509
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 212 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 248
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 249 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 305
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 306 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 355
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 356 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 387
>gi|282848965|ref|ZP_06258354.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
gi|282581240|gb|EFB86634.1| toxin-antitoxin system toxin component, PIN family [Veillonella
parvula ATCC 17745]
Length = 432
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q LLFSAT+ P+K+ L+ K + S +P S A +++ I +
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPISVTAEGKHITLESIDQRV 219
Query: 82 -FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
P E +++L + P + + F N +GA RL+ L
Sbjct: 220 YMMNPEEKTQRLIKMIEDDNPFL------------AIVFCNKREGAIRLSYEL------- 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+
Sbjct: 261 -TAAG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDV 317
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P ++ YIHRIGRT R G G +VT T +
Sbjct: 318 PHDVDYYIHRIGRTGRAGNSGIAVTFATPQD 348
>gi|227502907|ref|ZP_03932956.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
gi|227076329|gb|EEI14292.1| ATP-dependent RNA helicase [Corynebacterium accolens ATCC 49725]
Length = 452
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 11/146 (7%)
Query: 87 ELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
E + K+T + + K V+ +++ + F T + A +LA D++A +G
Sbjct: 229 ETTRKVTFQAHRMDKVAVIAHILQAQGRGRSIIFTRTKRSAAQLA------DDLAERG-- 280
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ V+ DL R K +Q FR ++D++VA+D ARGIDV+++ VINY+ PD+
Sbjct: 281 --FHVGAVHGDLGQKSREKSLQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPM 338
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
+IHRIGRT R G GT+VTLV E
Sbjct: 339 TFIHRIGRTGRAGHTGTAVTLVGYDE 364
>gi|193683600|ref|XP_001951837.1| PREDICTED: probable ATP-dependent RNA helicase DDX47-like
[Acyrthosiphon pisum]
Length = 450
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 41/221 (18%)
Query: 14 DTFLTYPSRPQR-LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGAD 72
D L R +R LFSAT++ +KLH+ SL P E
Sbjct: 184 DKILKVIPRERRTFLFSATMTKKVQKLHRASL-----------------VDPVRVEVST- 225
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARL 132
KF T +L + K + L ++ + A + F+ T G R+A L
Sbjct: 226 --------KFQTVEQLQQYYIFIPVKYKDVYLVHILNEMAGNSFMVFMATCNGTVRVALL 277
Query: 133 LHHI--DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
L ++ D + G T+ ++R + +F+ + +++++D +RG+D+
Sbjct: 278 LRNLGLDAIPLHGQMTQ------------NKRLASLNKFKSKSRSILISTDVSSRGLDIP 325
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++DVVIN++ P + K YIHR+GRTAR GR G ++TLVT ++
Sbjct: 326 HVDVVINFDMPTHSKDYIHRVGRTARAGRSGKAITLVTQYD 366
>gi|300779595|ref|ZP_07089451.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
gi|300533705|gb|EFK54764.1| ATP-dependent RNA helicase DeaD [Corynebacterium genitalium ATCC
33030]
Length = 440
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP V+ ++++ + F T + A +A ++VA +G + V+ DL
Sbjct: 239 KPEVVARVLQADGRGRTIIFTRTKRTAAEVA------EDVARRG----FAVGSVHGDLGQ 288
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + ++ FR+ ++++VA+D ARGIDV+++ VINY+ PD+ Y+HRIGRT R GR
Sbjct: 289 SARERSLEAFRKGDVEILVATDVAARGIDVDDVTHVINYQTPDDPMTYVHRIGRTGRAGR 348
Query: 220 QGTSVTLVTTHE 231
GT+VTLV E
Sbjct: 349 TGTAVTLVGFDE 360
>gi|407982755|ref|ZP_11163421.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
gi|407375643|gb|EKF24593.1| helicase conserved C-terminal domain protein [Mycobacterium
hassiacum DSM 44199]
Length = 517
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ ++++ + F T + A ++A D +A +G A V+ DL R
Sbjct: 246 MISRILQAEGRGATMIFTRTKRTAQKVA------DELAERG----FKAAAVHGDLGQGAR 295
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
K +Q FR +ID++VA+D ARGID+E++ VINY+ P++ + Y+HRIGRT R G+ G
Sbjct: 296 EKALQAFRTGEIDVLVATDVAARGIDIEDVTHVINYQIPEDEQSYVHRIGRTGRKGKAGV 355
Query: 223 SVTLVTTHE 231
+VTLV E
Sbjct: 356 AVTLVDWDE 364
>gi|163755350|ref|ZP_02162470.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
gi|161324770|gb|EDP96099.1| putative RNA helicase dead-box protein [Kordia algicida OT-1]
Length = 591
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 63/103 (61%)
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
R NVA K N A ++ DL +QR+ +++ FR R+I ++VA+D ARGID
Sbjct: 247 FCRTKRDTQNVAEKLIEDGYNAAAIHGDLSQNQRDLVMKSFRTRQIQMLVATDVAARGID 306
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V++I VINY+ PD I+ Y HR GRT R G+ G S+ +VT E
Sbjct: 307 VDDITHVINYQLPDEIETYTHRSGRTGRAGKNGVSMVIVTKSE 349
>gi|114046738|ref|YP_737288.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-7]
gi|113888180|gb|ABI42231.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-7]
Length = 409
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL + L PKL E N
Sbjct: 178 PAQRQTLLFSATLDDSIFGFSKNLLRDPKLI-----------------EVAKRN------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + V
Sbjct: 215 ---TTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTTQLNQL-GV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ + DL R K++++F++ + ++VA+D ARG+D+ ++ VIN+E
Sbjct: 271 ATQA---------FHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADLQYVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
>gi|447918451|ref|YP_007399019.1| putative ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
gi|445202314|gb|AGE27523.1| putative ATP-dependent RNA helicase [Pseudomonas poae RE*1-1-14]
Length = 445
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ + P + Q LLFSAT S + L AG P S E N
Sbjct: 171 NIYRMLPKKRQTLLFSATFSDEIRTL-----------------AGQMLNDPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ P + K P + L+RK + VL F T G
Sbjct: 214 VAANTVKQWVVPVDKKRK---------PELFVHLMRKGRWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ + ++VA+D ARG+D+E++
Sbjct: 257 --VDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSDVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 315 LVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADE 352
>gi|340375419|ref|XP_003386232.1| PREDICTED: ATP-dependent RNA helicase DDX18 [Amphimedon
queenslandica]
Length = 505
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 33/212 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q +LFSAT + E L ++SL + L+ G D + TS+ G L G++
Sbjct: 193 PKKRQTVLFSATQTKKTEDLARVSLKKAPLYV------GVDDDKMTSTVEG---LEQGYV 243
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
C + + L+L+ ++++ + V+ F ++ + LL++ID
Sbjct: 244 --------------VCPSEKRFLLLFAFLKRNLDKKVMVFFSSCNSVKFHSELLNYID-- 287
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ + ++Y K +R EF + + +++ +D ARG+D+ +D +I Y+
Sbjct: 288 --------IPVLDIYGRQKQQKRTSTFFEFCQSEKCILLCTDVAARGLDIPEVDWIIQYD 339
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
PD+ K+YIHR+GRTAR G +G ++ + E
Sbjct: 340 PPDDPKEYIHRVGRTARAGARGKALLFLLPEE 371
>gi|402882297|ref|XP_003904684.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Papio anubis]
Length = 711
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 381 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 430
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 431 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 486
>gi|423097460|ref|ZP_17085256.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
gi|397888059|gb|EJL04542.1| ATP-dependent RNA helicase, putative [Pseudomonas fluorescens
Q2-87]
Length = 445
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 36/220 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
+ + + P + Q LLFSAT S L AG P S E
Sbjct: 169 LANIYKALPKKRQTLLFSATFSDAIRLL-----------------AGQMLNDPLSIEVSP 211
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
N+++ + ++ + T KP + L+R+H + VL F T G
Sbjct: 212 RNVAANTVKQW---------VVTVDKKRKPELFVHLMRQHKWKQVLVFAKTRNG------ 256
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E+
Sbjct: 257 ----VDALVEKLQGLGVNADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIED 312
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +V+N++ P + YIHRIGRT R G G +++LV E
Sbjct: 313 LPLVVNFDLPIVAEDYIHRIGRTGRAGATGQAISLVCADE 352
>gi|327405768|ref|YP_004346606.1| DEAD/DEAH box helicase domain-containing protein [Fluviicola
taffensis DSM 16823]
gi|327321276|gb|AEA45768.1| DEAD/DEAH box helicase domain protein [Fluviicola taffensis DSM
16823]
Length = 685
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%)
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
R + VA K A + ++ DL R++++ FR R I L+VA+D ARGID
Sbjct: 247 FCRTRNETATVAEKLAKEGYSAEPLHGDLSQAMRDRVMDRFRERSIQLLVATDVAARGID 306
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V+NI VINY PD+I+ Y HR GRTAR G+QG S+ L+ T E
Sbjct: 307 VDNITHVINYNLPDDIENYTHRSGRTARAGKQGKSLVLINTRE 349
>gi|189351106|ref|YP_001946734.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
gi|189335128|dbj|BAG44198.1| ATP-dependent RNA helicase [Burkholderia multivorans ATCC 17616]
Length = 487
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL A T P + E N
Sbjct: 190 PKERQTLLFSATFSPEIKKL-----------------ASTYLRNPQTIEVARSN------ 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T A +++ + + K + QL+R ++ V+ F N+ GA RLAR L V
Sbjct: 227 ---STNANVTQIVYDVAEGDKQAAVVQLLRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A+ G K + +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ASAIHGDKSQL----------ERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGATGDALSLCSPNE 365
>gi|152993022|ref|YP_001358743.1| DEAD/DEAH box helicase [Sulfurovum sp. NBC37-1]
gi|151424883|dbj|BAF72386.1| ATP-dependent RNA helicase, DEAD-box family [Sulfurovum sp.
NBC37-1]
Length = 460
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 41/229 (17%)
Query: 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLS---LFQPKLFTSVVEPAGTGDT 62
+G L + + F P Q LLFSAT+ PE + +L+ L+QP+ F SVV GD
Sbjct: 157 MGFLDEIKEIFEYIPQNRQTLLFSATM---PEPIKELANHILYQPE-FISVV-----GDE 207
Query: 63 QPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNT 122
+ TT + ++ + N + + +L+ + F
Sbjct: 208 E-------------------TTNNIIEQRYYVINENQRDEAIVKLLETEDTNKCIIFCRM 248
Query: 123 AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182
+ RL L N + ++ DL+ R +I+ +RR + ++VA+D
Sbjct: 249 KREVDRLTEYLQ----------AQGFNASGLHGDLEQQDREVVIKAYRRGETKIMVATDV 298
Query: 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ARG+DV+++ V NY P + + Y+HRIGRT R G+ G ++TLVTT E
Sbjct: 299 AARGLDVKDVTHVFNYHIPFDPQSYVHRIGRTGRAGKSGQAITLVTTEE 347
>gi|306835508|ref|ZP_07468523.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
gi|304568617|gb|EFM44167.1| ATP-dependent RNA helicase DeaD [Corynebacterium accolens ATCC
49726]
Length = 446
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 10/129 (7%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
V+ +++ + F T + A +LA D++A +G ++ V+ DL R
Sbjct: 246 VIAHILQAQGRGRSIIFTRTKRSAAQLA------DDLAERG----FHVGAVHGDLGQKSR 295
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
K +Q FR ++D++VA+D ARGIDV+++ VINY+ PD+ +IHRIGRT R G GT
Sbjct: 296 EKSLQAFRSGEVDILVATDIAARGIDVDDVTHVINYQVPDDPMTFIHRIGRTGRAGHTGT 355
Query: 223 SVTLVTTHE 231
+VTLV E
Sbjct: 356 AVTLVGYDE 364
>gi|294793457|ref|ZP_06758594.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
gi|294455027|gb|EFG23399.1| DEAD-box ATP-dependent RNA helicase YdbR [Veillonella sp. 3_1_44]
Length = 432
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q LLFSAT+ P+K+ L+ K + S +P S A +++ I +
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPISVTAEGKHITLESIDQRV 219
Query: 82 -FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
P E +++L + P + + F N +GA RL+ L
Sbjct: 220 YMMNPEEKTQRLIKMIEDDNPFL------------AIVFCNKREGAIRLSYEL------- 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+
Sbjct: 261 -TAAG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDV 317
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P ++ YIHRIGRT R G G +VT T +
Sbjct: 318 PRDVDYYIHRIGRTGRAGNSGIAVTFATPQD 348
>gi|294893294|ref|XP_002774400.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239879793|gb|EER06216.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 535
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 78/135 (57%), Gaps = 10/135 (7%)
Query: 97 TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD 156
+ L V++ ++ + L F NT + +L +LL ++G N ++SD
Sbjct: 382 SRLGVAVVWNVLESNGEAKALIFCNTKREVDQLTQLLR------SQG----YNAVCIHSD 431
Query: 157 LKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTAR 216
+ +R + ++R + L+VA++ + RG+D++NI VINY+ P N+++Y+HRIGRTAR
Sbjct: 432 KEQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRTAR 491
Query: 217 GGRQGTSVTLVTTHE 231
G GTS+TL T E
Sbjct: 492 AGAHGTSITLFTAQE 506
>gi|434394529|ref|YP_007129476.1| DEAD/DEAH box helicase domain protein [Gloeocapsa sp. PCC 7428]
gi|428266370|gb|AFZ32316.1| DEAD/DEAH box helicase domain protein [Gloeocapsa sp. PCC 7428]
Length = 464
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 105/214 (49%), Gaps = 35/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
T PS Q LFSAT+ P + QL K S P QP ++ + +
Sbjct: 172 TAPSERQTALFSATM---PPSIRQLVT---KFLRS---PVTVTVEQPKAAPTRINQV--- 219
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
A L + T + L+P++ + + L FV T + A L L
Sbjct: 220 --------AYLVPRHWTKARALQPILALE-----DPESALIFVRTRKTAAELTNQL---- 262
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ AG ++ E + DL R +++ FR +++ V+A+D ARG+DVE++ VIN
Sbjct: 263 ----QAAG--YSVDEYHGDLTQQARERLLMRFRNKQVRWVIATDIAARGLDVEDLTHVIN 316
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+ PD+++ Y+HRIGRT R G++GT+++LV E
Sbjct: 317 YDLPDSVETYVHRIGRTGRAGKEGTAISLVQPFE 350
>gi|117919611|ref|YP_868803.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611943|gb|ABK47397.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 409
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSATL + L PKL E N
Sbjct: 178 PAQRQTLLFSATLDDSIFGFSKNLLRDPKLI-----------------EVAKRN------ 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + V
Sbjct: 215 ---TTAAQVEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTTQLNQL-GV 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT+ + DL R K++++F++ + ++VA+D ARG+D+ ++ VIN+E
Sbjct: 271 ATQA---------FHGDLSQGAREKVLKDFKQGLVQVLVATDVAARGLDIADLQYVINFE 321
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G ++TL + +
Sbjct: 322 LPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
>gi|117919262|ref|YP_868454.1| DEAD/DEAH box helicase [Shewanella sp. ANA-3]
gi|117611594|gb|ABK47048.1| DEAD/DEAH box helicase domain protein [Shewanella sp. ANA-3]
Length = 578
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S + +L + + QP + V P N ++ +
Sbjct: 176 PAKRQNLMFSATFSDEIRELAKGLVNQPVEIS--VTP---------------RNAAANTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + N K +L QLI++ Q VL F T GA+RLA+ L +
Sbjct: 219 KQWICPVD---------KNQKSALLIQLIKQEDWQQVLVFSRTKHGANRLAKSLIQAE-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 268 --------ISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGALGQAVSLVSSEE 351
>gi|212555986|gb|ACJ28440.1| Helicase, DEAD box [Shewanella piezotolerans WP3]
Length = 440
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 38/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT PE ++SL L + VE Q S E
Sbjct: 201 PAKKQTLLFSATF---PE---EVSLLTQSLLNNPVE------VQLQSEEKNT-------- 240
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
L +++ T + N K +L +LI+++ Q +L F + +RLA +DN
Sbjct: 241 --------LVQRVITVNRNRKTPLLVELIKQNDWQQILIFASAKYTCNRLA---QKLDN- 288
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG I +SD R +++ F+R + +++A+D ARGID+E + +VINYE
Sbjct: 289 ----AGITAEI--FHSDKGQGARTRVLDGFKRGETRVLIATDIAARGIDIEKLPIVINYE 342
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGR+ R G G +++L++ E
Sbjct: 343 LPRSPADYMHRIGRSGRAGEAGLALSLISHDE 374
>gi|89894700|ref|YP_518187.1| hypothetical protein DSY1954 [Desulfitobacterium hafniense Y51]
gi|89334148|dbj|BAE83743.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
L P++ Q+ LF + + + A +QP S D L+ I +
Sbjct: 181 LKQVPKEERQVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLI---------EQV 231
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
+K L ++I + + F T +G L L A
Sbjct: 232 FYETRDKIKVDALCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADA--------- 282
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DL QR++++++FR K++L+VA+D ARG+D++N+ VIN++ P + + Y+HRI
Sbjct: 283 -LHGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRI 341
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR+G ++TLV++ E
Sbjct: 342 GRTGRAGRKGQAITLVSSRE 361
>gi|410611270|ref|ZP_11322369.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
gi|410169121|dbj|GAC36258.1| ATP-dependent RNA helicase rhlB [Glaciecola psychrophila 170]
Length = 438
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S D KL + + P + V PA N + +
Sbjct: 176 PQKRQNLMFSATFSDDIRKLAKGLVNNPVEIS--VSPA---------------NTTVDLV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHID 137
++ P + S+K +L LI+++ Q VL F T GA+R+A+ L H I
Sbjct: 219 EQWVYPVDKSKKSQ---------LLTHLIKENDWQQVLVFSRTKHGANRIAKQLEAHGIS 269
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
+ A G ++ R K + +F++ K+ ++A+D ARG+D++ + V+N
Sbjct: 270 SAAIHGNKSQ------------GARTKALADFKQGKVKALIATDIAARGLDIDQLPQVVN 317
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++ P+ + Y+HRIGRT R G G ++++VT E
Sbjct: 318 FDLPNVPEDYVHRIGRTGRAGATGQAISMVTQDE 351
>gi|423074659|ref|ZP_17063384.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
gi|361854479|gb|EHL06545.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfitobacterium
hafniense DP7]
Length = 537
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 19/200 (9%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
L P++ Q+ LF + + + A +QP S D L+ I +
Sbjct: 181 LKQVPKEERQVMLFSATMPPEIKKLAQNYMSQPKSVAVSRDELTVPLI---------EQV 231
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
+K L ++I + + F T +G L L A
Sbjct: 232 FYETRDKIKVDALCRIIDMEDIGQAIIFCRTKRGVDELVAALEARGYFADA--------- 282
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DL QR++++++FR K++L+VA+D ARG+D++N+ VIN++ P + + Y+HRI
Sbjct: 283 -LHGDLSQQQRDRVMKKFRDGKVELLVATDVAARGLDIDNVTHVINFDIPQDPESYVHRI 341
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR+G ++TLV++ E
Sbjct: 342 GRTGRAGRKGQAITLVSSRE 361
>gi|402698353|ref|ZP_10846332.1| ATP-dependent RNA helicase [Pseudomonas fragi A22]
Length = 445
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 36/218 (16%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D + P + Q LLFSAT S L + L P S E N
Sbjct: 171 DIYRVLPKKRQTLLFSATFSDAIRLLAEQML-----------------DNPLSIEVSPRN 213
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
+++ + ++ P + KP + L+R + VL F T G
Sbjct: 214 VAASSVKQWIIPVD---------KKRKPELFLHLLRTQQWKQVLVFAKTRNG-------- 256
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+D + K G +N ++ D R + + F+ ++ ++VA+D ARG+D+E++
Sbjct: 257 --VDELVGKLQGLGINADGIHGDKPQATRQRALDRFKASEVQILVATDVAARGLDIEDLP 314
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+VIN++ P + YIHRIGRT R G++G +++ V E
Sbjct: 315 LVINFDMPIVAEDYIHRIGRTGRAGQKGEAISFVCADE 352
>gi|269797693|ref|YP_003311593.1| DEAD/DEAH box helicase [Veillonella parvula DSM 2008]
gi|269094322|gb|ACZ24313.1| DEAD/DEAH box helicase domain protein [Veillonella parvula DSM
2008]
Length = 432
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 103/211 (48%), Gaps = 42/211 (19%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK-- 81
Q LLFSAT+ P+K+ L+ K + S +P S A +++ I +
Sbjct: 177 QLLLFSATI---PDKIRNLA----KAYMS----------KPISVTAEGKHITLESIDQRV 219
Query: 82 -FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
P E +++L + P + + F N +GA RL+ L
Sbjct: 220 YMMNPEEKTQRLIKMIEDDNPFL------------AIVFCNKREGAIRLSYEL------- 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
AG +NIAE++ DL +R +I+++F + K ++VA+D ARGID+E I V NY+
Sbjct: 261 -TAAG--LNIAEMHGDLTQGRRTQILRDFAKAKTQILVATDIAARGIDIEGITHVYNYDV 317
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P ++ YIHRIGRT R G G +VT T +
Sbjct: 318 PRDVDYYIHRIGRTGRAGNSGIAVTFATPQD 348
>gi|452993077|emb|CCQ95421.1| DEAD/DEAH box helicase domain protein [Clostridium ultunense Esp]
Length = 569
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 20/197 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
++H PE+ Q F + +V+ A T P + + L+ + ++ EL E
Sbjct: 212 VNHMPEE-RQTIFFSATMPKEIVDFAKRYQTNPKTIKVVHKELTVPRVEQYY--FELKE- 267
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
++K +L +LI + + + F NT + +D + + G +
Sbjct: 268 ------HMKTEILSRLIDIYNPKLSIVFCNTKK----------KVDELTIELQGRGYFVD 311
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DLK QR++++ +FR ID++VA+D ARG+DV+++D+V NY+ P + + Y+HRI
Sbjct: 312 GLHGDLKQSQRDRVMSKFRTGNIDILVATDVAARGLDVDDVDIVFNYDIPQDEEYYVHRI 371
Query: 212 GRTARGGRQGTSVTLVT 228
GRTAR GR+G +++ V
Sbjct: 372 GRTARAGREGIALSFVV 388
>gi|367049970|ref|XP_003655364.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
gi|347002628|gb|AEO69028.1| hypothetical protein THITE_2119013 [Thielavia terrestris NRRL 8126]
Length = 755
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/213 (29%), Positives = 105/213 (49%), Gaps = 37/213 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPK--LFTSVVEPAGTGDTQPTSSEAGADNLS 75
T P Q +LFSAT++ + L ++ L +P + S AGT + G +
Sbjct: 405 TLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRIMVDSQKATAGTLTQEFVRLRPGREEKR 464
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G++ + C T LY + V+ F + AHR AR++
Sbjct: 465 MGYL------------VHICKT------LY-------TKRVIIFFRQKKVAHR-ARIIFG 498
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ ++ AE++ + QR +++FR K+D ++A+D +RG+D++ +D V
Sbjct: 499 L---------LGLSCAELHGSMSQTQRIGSVEDFRDGKVDYLLATDLASRGLDIKRVDTV 549
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INYEAP N++ Y+HR+GRTAR GR G ++TL
Sbjct: 550 INYEAPQNLEIYVHRVGRTARAGRSGVAITLAA 582
>gi|433660730|ref|YP_007301589.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
gi|432512117|gb|AGB12934.1| ATP-dependent RNA helicase [Vibrio parahaemolyticus BB22OP]
Length = 412
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 10/149 (6%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T ++ E L + K L +LI+K+A L F+ + A LA+ L+
Sbjct: 206 STNQDIVETLYLVNKGSKTKALIELIQKNAWTQALVFIGAKENADGLAKKLNK------- 258
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
AG N +Y D +R +++ +F+ ++ +++A+D LARGI +E + VVIN+E P
Sbjct: 259 -AGISTN--ALYGDKSQAEREEVLAQFKSGQMQVLIATDLLARGIHIEQLPVVINFELPM 315
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ + Y+HR+GRTAR G QG +++LV E
Sbjct: 316 HAETYVHRVGRTARAGEQGVAMSLVCHGE 344
>gi|414155170|ref|ZP_11411485.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
gi|411453220|emb|CCO09389.1| DEAD-box ATP-dependent RNA helicase CshA [Desulfotomaculum
hydrothermale Lam5 = DSM 18033]
Length = 532
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Query: 103 VLYQLIRKHAMQGVLCFVNT---AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
V Y++ KH ++ + ++T AQG R +D + A ++ DL
Sbjct: 224 VYYEVPEKHKLEALCRLLDTTDIAQGIV-FCRTKRGVDELVAGLQARGYTAAALHGDLSQ 282
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
QRN ++++FR +++L+VA+D ARG+D+E + VINY+ P + + Y+HRIGRT R GR
Sbjct: 283 QQRNNVMRQFRSGEVELLVATDVAARGLDIEGVSHVINYDIPQDPEFYVHRIGRTGRAGR 342
Query: 220 QGTSVTLVTTHE 231
G ++T++ E
Sbjct: 343 SGVAITIINPRE 354
>gi|238028570|ref|YP_002912801.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
gi|237877764|gb|ACR30097.1| ATP-dependent RNA helicase [Burkholderia glumae BGR1]
Length = 483
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + + L L P L E N
Sbjct: 179 PAKRQNLLFSATFSDEIKALADSLLDSPALI-----------------EVARRN------ 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT +++K+ + K +L LIR+H VL F T GA+RLA L
Sbjct: 216 ---TTAETIAQKIHPVDRDRKREMLTHLIREHNWFQVLVFTRTKHGANRLAEQL------ 266
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
TK + + I + + R + + EF+ + ++VA+D ARGID++ + V+NYE
Sbjct: 267 -TKDGISALAI---HGNKSQSARTRALSEFKAGTLQVLVATDIAARGIDIDQLPHVVNYE 322
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 323 LPNVPEDYVHRIGRTGRAGANGEAVSLVCVDE 354
>gi|365097957|ref|ZP_09331724.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
gi|363413202|gb|EHL20410.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax sp.
NO-1]
Length = 505
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 36/209 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + LLFSAT S + ++L S Q + V P T T
Sbjct: 182 PKQRTTLLFSATFSPEIKRLAS-SYLQNPVTIEVARPNETAST----------------- 223
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ ++ + + K ++Q+++ ++ FVN+ G RLAR L
Sbjct: 224 --------VEQRFYSAGDDDKRRAIHQVLKSRGIKQAFIFVNSKLGCARLARSLER---- 271
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ ++ D D+R K ++ F+ ++DL+V +D ARG+D++++ V N++
Sbjct: 272 ------EGLKTTALHGDKSQDERLKALEAFKSGEVDLLVCTDVAARGLDIKDVPAVFNFD 325
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P N + Y+HRIGRT R G G +VTLV+
Sbjct: 326 VPFNAEDYVHRIGRTGRAGASGLAVTLVS 354
>gi|325982424|ref|YP_004294826.1| DEAD/DEAH box helicase domain-containing protein [Nitrosomonas sp.
AL212]
gi|325531943|gb|ADZ26664.1| DEAD/DEAH box helicase domain protein [Nitrosomonas sp. AL212]
Length = 476
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 98/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q L+FSAT S + +KL AG P E N S I
Sbjct: 184 PDQRQNLMFSATFSEEIKKL-----------------AGKILKSPILIEVAKQNSVSDLI 226
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
E S N K L +I+K +Q VL F T GA LA+ L+ D +
Sbjct: 227 SHIVYSVE--------SKN-KQEFLIDMIKKKNLQQVLIFTRTKHGADHLAQKLNSRDIL 277
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ G + + QR + + F+ I ++VA+D ARG+D+E + VIN+E
Sbjct: 278 SSVIHGDRNQL----------QRTQALDNFKCGLIRILVATDVAARGLDIEELTHVINFE 327
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+N + Y+HRIGRT R G +G +++ V+ E
Sbjct: 328 LPNNPEDYVHRIGRTGRAGAKGFAISFVSREE 359
>gi|229150655|ref|ZP_04278869.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
gi|228632742|gb|EEK89357.1| ATP-dependent RNA helicase [Bacillus cereus m1550]
Length = 454
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPDSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFIMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|225850461|ref|YP_002730695.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
gi|225644960|gb|ACO03146.1| dead/deah box helicase domain protein [Persephonella marina EX-H1]
Length = 403
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 77/128 (60%), Gaps = 10/128 (7%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L +++ ++ + + F T +GA L++ L N ++ D +R
Sbjct: 242 LTKILNENEGKKSIVFTETKRGADELSKKLRR----------EGFNADAIHGDYSQAKRE 291
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+++++FRR +ID++VA+D ARG+D++ +DVV NY P +++ YIHRIGRT R G+ G +
Sbjct: 292 RVLRDFRRNRIDILVATDVAARGLDIKGVDVVYNYSLPRDVESYIHRIGRTGRAGKDGLA 351
Query: 224 VTLVTTHE 231
+++++T E
Sbjct: 352 ISIISTLE 359
>gi|397630447|gb|EJK69772.1| hypothetical protein THAOC_08936 [Thalassiosira oceanica]
Length = 544
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 104/214 (48%), Gaps = 20/214 (9%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
+ F PS Q LLFSATL ++L +L L +P ++ + G + A
Sbjct: 77 EIFKACPSERQTLLFSATLGTKVDELIKLGLKRPVRISATDKNKGGDAGPGGAGVEVAPR 136
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL 133
L F+ + + E N + ++L L R + +CF +T AHRL
Sbjct: 137 LEQEFV-RIRSGNE--------GVNREGMLLALLTRTFTSK-TMCFFDTKVAAHRLM--- 183
Query: 134 HHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENID 193
+ G K AE++ +L QR + ++ FR +D+++ +D ARG+D+ ++
Sbjct: 184 -----IICGLCGIK--CAELHGNLTQTQRLEALEAFREGSVDVLLCTDLAARGLDITCVE 236
Query: 194 VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
V+N+E P + Y+HRIGRTAR GR G + TL+
Sbjct: 237 AVVNFEMPSQVATYVHRIGRTARAGRGGKACTLI 270
>gi|332525968|ref|ZP_08402109.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
gi|332109519|gb|EGJ10442.1| DEAD/DEAH box helicase domain-containing protein [Rubrivivax
benzoatilyticus JA2]
Length = 500
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + + L L QP L V T DT
Sbjct: 180 PQKKQSLLFSATFSDEIKALADRLLNQPALI-EVARRNATADT----------------- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+++K+ K +L LIR+ VL F GA+RLA L+
Sbjct: 222 --------IAQKVHPVGREKKKELLAHLIRQGDWHQVLVFTRMKHGANRLAEYLNEQGIT 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + EF+ + ++VA+D ARGID++ + V+NYE
Sbjct: 274 AMAIHGNKSQGA----------RTKALAEFKAGTLQVLVATDIAARGIDIDQLPHVVNYE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 324 LPNVPEDYVHRIGRTGRAGASGEAVSLVCLDE 355
>gi|296200672|ref|XP_002747679.1| PREDICTED: probable ATP-dependent RNA helicase DDX27 [Callithrix
jacchus]
Length = 764
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 434 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQMQRLEALRRFKDEQID 483
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 484 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEDE 539
>gi|444376140|ref|ZP_21175388.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
gi|443679696|gb|ELT86348.1| ATP-dependent RNA helicase [Enterovibrio sp. AK16]
Length = 412
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 36/214 (16%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
P++ Q LLFSAT+ E LF+P EA N
Sbjct: 169 ALPAKRQTLLFSATMPQALESAAASMLFKP-----------------VRIEAHQKN---- 207
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+ E+ E+L + K L LI++H + VL FV A LA+ L
Sbjct: 208 -----SVVEEIEERLYLVNKGSKAQALISLIKQHGWKQVLVFVGERGNADALAKKL---- 258
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
TK M++A ++ D R + + F+ +K++++V++D L+RGI ++ + VVIN
Sbjct: 259 ---TKAG---MSVAALHGDKDQTAREQTLAAFKAKKVNVLVSTDLLSRGIHIDALPVVIN 312
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P N Y+HR+GRTAR G G +++LV E
Sbjct: 313 ADLPPNAPVYVHRVGRTARAGENGLALSLVCHGE 346
>gi|343493741|ref|ZP_08732041.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
gi|342825883|gb|EGU60344.1| ATP-dependent RNA helicase RhlE [Vibrio nigripulchritudo ATCC
27043]
Length = 485
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 97/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D L + + P+ SV P T T
Sbjct: 176 PEKRQNLLFSATFSDDIRALAKGLVHNPEQI-SVSPPNATAKT----------------- 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + L KP +L +LI+++ VL F T GA+RL+R L +NV
Sbjct: 218 --------VEQYLYNVDKKKKPSILAKLIKENDWSQVLIFSKTKHGANRLSRFLES-ENV 268
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K ++ F+ ++ +VA+D ARG+D+ + V+N+E
Sbjct: 269 SA---------AAIHGNKSQGARIKALEHFKTGQVRALVATDIAARGLDIPQLPQVVNFE 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G G + +LV E
Sbjct: 320 LPHVPEDYVHRIGRTGRAGESGKAYSLVCADE 351
>gi|113971464|ref|YP_735257.1| DEAD/DEAH box helicase domain-containing protein [Shewanella sp.
MR-4]
gi|113886148|gb|ABI40200.1| DEAD/DEAH box helicase domain protein [Shewanella sp. MR-4]
Length = 549
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 107/212 (50%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q L+FSAT S + +L + + QP + V P N ++ +
Sbjct: 176 PAKRQNLMFSATFSDEIRELAKGLVNQPVEIS--VTP---------------RNAAANTV 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + N K +L QLI++ Q VL F T GA+RLA+ L +
Sbjct: 219 KQWICPVD---------KNQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAE-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
++ A ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N++
Sbjct: 268 --------ISAAAIHGNKSQGARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV++ E
Sbjct: 320 LPNVPEDYVHRIGRTGRAGALGQAVSLVSSEE 351
>gi|351703078|gb|EHB05997.1| Putative ATP-dependent RNA helicase DDX27 [Heterocephalus glaber]
Length = 765
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ HI + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRM-----HILLGLLG-----LQVGELHGNLSQTQRLEALRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGRSVSLVGEEE 540
>gi|443715023|gb|ELU07175.1| hypothetical protein CAPTEDRAFT_143878, partial [Capitella teleta]
Length = 497
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 32/214 (14%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
+ P Q LLFSAT + + L +LSL P ++ SV E A
Sbjct: 221 SLPPERQTLLFSATQTKSVKDLARLSLKDP-VYVSVHEKAAN------------------ 261
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
+TP++L + C + K L+ I++H +L F+++ + R LH
Sbjct: 262 -----STPSQLQQSYIVCELHEKISFLWSFIKQHPRTKLLVFISSCKQV----RFLHQ-- 310
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
A + + I+ ++ +K +R ++ QEF R++ +++A+D ARG+D ++ V+
Sbjct: 311 --ALQKFRPGIAISALHGGMKQMRRMEVYQEFCRKQHMVLLATDIAARGLDFPAVNWVVQ 368
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P+N+ YIHR GRTAR + G S+ ++T E
Sbjct: 369 MDCPENVNTYIHRAGRTARYEKDGESILVLTPSE 402
>gi|423205411|ref|ZP_17191967.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
gi|404624206|gb|EKB21046.1| hypothetical protein HMPREF1168_01602 [Aeromonas veronii AMC34]
Length = 416
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT + L ++ L P+L V P
Sbjct: 180 PADRQTLLFSATCDDNLFALSKVLLRDPELIE--VAP----------------------- 214
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ TT AE+ +++ T ++ K ++ +++ L F T QGA +LA+ L D
Sbjct: 215 -RNTTAAEVEQRVYTVDSDRKLALVEHMLKVKGWAPALIFSRTRQGADKLAQQLGKAD-- 271
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+N + DL R K++ EFR + +VA+D ARG+D+ +++ VIN E
Sbjct: 272 --------INALAFHGDLSQSAREKVLLEFRAGTLQALVATDVAARGLDITDLNYVINLE 323
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G +G ++TL + +
Sbjct: 324 FPFVAEDYVHRIGRTGRAGNKGLAITLFSPED 355
>gi|152992886|ref|YP_001358607.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
gi|151424747|dbj|BAF72250.1| ATP-dependent RNA helicase [Sulfurovum sp. NBC37-1]
Length = 457
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P L E +N
Sbjct: 177 PKERQTLLFSATFSLEIKKLASGLLKNPVLV-----------------EVAREN------ 213
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT ++S+ + + K +L QLI+ + VL F T GA+RL + L
Sbjct: 214 ---TTADQISQVVHFVDKSRKRELLSQLIKTKDWRQVLVFTRTKHGANRLTKQLEE---- 266
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG ++ A ++ + R K + F+ +I ++VA+D ARGID++ + V+NYE
Sbjct: 267 ----AG--ISAAAIHGNKSQGARTKALASFKANEIRVLVATDIAARGIDIDQLPHVVNYE 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G+ G +V+LV E
Sbjct: 321 LPNVPEDYVHRIGRTGRAGQSGEAVSLVCVDE 352
>gi|319778451|ref|YP_004129364.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|397662231|ref|YP_006502931.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|317108475|gb|ADU91221.1| ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
gi|394350410|gb|AFN36324.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis ATCC
35865]
gi|399115832|emb|CCG18635.1| putative ATP-dependent RNA helicase [Taylorella equigenitalis
14/56]
Length = 442
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LL+SAT S + L Q L P T ++N
Sbjct: 183 PKSRQSLLYSATFSENIRSLAQKFLNNPVEIT-----------------VASNN------ 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+T + + +++ + S + K L ++ A V+ F N L RLL++ D
Sbjct: 220 ---STASTIKQEVYSVSESDKNAALVYILTSRAFNNVIIFSNRKVTCKNLERLLNNYD-- 274
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ + ++ D +R K + F+ K +++VA+D ARG+D+ ++D VINYE
Sbjct: 275 --------LAVQSLHGDKSQLERTKALDLFKSSKCNILVATDVAARGLDISDVDAVINYE 326
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRT R G++G +++L ++ E
Sbjct: 327 LPPTSEDYVHRIGRTGRAGKKGIAISLCSSEE 358
>gi|441516681|ref|ZP_20998428.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
gi|441456474|dbj|GAC56389.1| putative ATP-dependent RNA helicase, partial [Gordonia hirsuta DSM
44140 = NBRC 16056]
Length = 464
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G ++ V+ DL
Sbjct: 278 KAELVARILQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FSVGAVHGDLGQ 327
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 328 VAREKALGKFREGNIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR 387
Query: 220 QGTSVTLVTTHE 231
GT++T V E
Sbjct: 388 TGTAITFVDWDE 399
>gi|15668850|ref|NP_247653.1| DEAD/DEAH box helicase [Methanocaldococcus jannaschii DSM 2661]
gi|2500540|sp|Q58083.1|H669_METJA RecName: Full=Probable ATP-dependent RNA helicase MJ0669
gi|1591383|gb|AAB98663.1| ATP-dependent RNA helicase, DEAD-family (deaD) [Methanocaldococcus
jannaschii DSM 2661]
Length = 367
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 16/164 (9%)
Query: 73 NLSSGFIGKFT-----TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAH 127
NL+ ++G ++ A + + + N + L +L++ G L F T +
Sbjct: 194 NLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYG-LVFCKTKRDTK 252
Query: 128 RLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGI 187
LA +L I A GA ++ DL QR K+I+ F+++KI +++A+D ++RGI
Sbjct: 253 ELASMLRDIGFKA--GA--------IHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGI 302
Query: 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
DV +++ VINY P N + Y+HRIGRT R G++G +++++ E
Sbjct: 303 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346
>gi|153806359|ref|ZP_01959027.1| hypothetical protein BACCAC_00620 [Bacteroides caccae ATCC 43185]
gi|423218666|ref|ZP_17205162.1| hypothetical protein HMPREF1061_01935 [Bacteroides caccae
CL03T12C61]
gi|149131036|gb|EDM22242.1| DEAD/DEAH box helicase [Bacteroides caccae ATCC 43185]
gi|392628169|gb|EIY22204.1| hypothetical protein HMPREF1061_01935 [Bacteroides caccae
CL03T12C61]
Length = 420
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P+ +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------ANTILNNPSEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ + + C N K ++ L + V+ F ++ + + L +
Sbjct: 213 ---SRPADKIIQAAYVCYENQKLGIIRNLFMDEVPERVIIFASSKIKVKEVTKALKSM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ +F+ +I+++VA+D +ARGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQVQREAVMHDFKAGRINILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVSEKE 352
>gi|294867179|ref|XP_002764990.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239864870|gb|EEQ97707.1| RNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 11/134 (8%)
Query: 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL 157
N+ P V + ++ + L F NT + +L +LL ++G N ++SD
Sbjct: 423 NVIPKV-WNVLESNGEAKALIFCNTKREVDQLTQLLR------SQG----YNAVCIHSDK 471
Query: 158 KFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217
+ +R + ++R + L+VA++ + RG+D++NI VINY+ P N+++Y+HRIGRTAR
Sbjct: 472 EQSEREWVFAQYRDGDVRLLVATNLMGRGVDIKNIQFVINYDMPQNVEEYVHRIGRTARA 531
Query: 218 GRQGTSVTLVTTHE 231
G GTS+TL T E
Sbjct: 532 GAHGTSITLFTAQE 545
>gi|170077242|ref|YP_001733880.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|12003026|gb|AAG43442.1|AF186181_2 ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
gi|169884911|gb|ACA98624.1| ATP-dependent RNA helicase DeaD [Synechococcus sp. PCC 7002]
Length = 487
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 68/114 (59%), Gaps = 10/114 (8%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
+ + FV T + A L L AG + E + DL +QR K+++ F+ K
Sbjct: 243 ESAIIFVRTKRTASELTNELVE--------AGQSAD--EYHGDLNQNQREKLVRRFKDGK 292
Query: 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
I ++VA+D ARG+DVEN+ VIN++ PDN + YIHRIGRT R G+ GT++ LV
Sbjct: 293 IKMIVATDIAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALV 346
>gi|390570352|ref|ZP_10250619.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
gi|389937684|gb|EIM99545.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
terrae BS001]
Length = 486
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSAT S + +KL L P+ +E A + T A N++
Sbjct: 190 PAERQTLLFSATFSPEIKKLASTYLRNPQ----TIEVARSNST--------ATNVTQIVY 237
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
E++E T + + +LIR ++ V+ F N+ GA RLAR L V
Sbjct: 238 -------EVAEGDKTGA-------VVKLIRDRGLKQVIVFCNSKIGASRLARQLERDGVV 283
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AT ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 284 ATA----------IHGDRTQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 333
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 334 LPFNAEDYVHRIGRTGRAGASGDALSLFSPNE 365
>gi|365539063|ref|ZP_09364238.1| ATP-dependent RNA helicase [Vibrio ordalii ATCC 33509]
Length = 396
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 99/213 (46%), Gaps = 36/213 (16%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P Q LLFSATL+ D E++ L + P EA N
Sbjct: 158 MPQTKQTLLFSATLAADLEQMALAVL-----------------SNPVKIEANQAN----- 195
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
E+ E+L + K L LI++ A Q VL F++ A D
Sbjct: 196 ----QVVEEIEEQLYLVNKGSKAQALIALIKQRAGQQVLVFISARDSA----------DA 241
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
VA K + A ++ + R + + +F+ ++D++VA+D LARGI +E + VVIN+
Sbjct: 242 VAKKLLKAGIRAAALHGEKDQVIREQTLADFKVNQVDVLVATDLLARGIHIEALPVVINF 301
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + YIHR+GRTAR G+ G +++LV E
Sbjct: 302 DLPPSAPVYIHRVGRTARAGQGGVAISLVCHGE 334
>gi|367016289|ref|XP_003682643.1| hypothetical protein TDEL_0G00650 [Torulaspora delbrueckii]
gi|359750306|emb|CCE93432.1| hypothetical protein TDEL_0G00650 [Torulaspora delbrueckii]
Length = 485
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 34/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT + E L ++SL LF +VV + AD L G++
Sbjct: 202 QSMLFSATQTTKVEDLARISLRPGPLFINVVS---------EKDNSTADGLEQGYV---- 248
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
C ++ + L+L+ ++++ + V+ F+++ A LL++ID
Sbjct: 249 ----------VCDSDKRFLLLFSFLKRNQKKKVIVFLSSCNSVKYYAELLNYID------ 292
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD+
Sbjct: 293 ----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPDD 348
Query: 204 IKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ YIHR+GRTARG + +G S+ +T E
Sbjct: 349 PRDYIHRVGRTARGTKGKGKSLMFLTPSE 377
>gi|162148769|ref|YP_001603230.1| ATP-dependent RNA helicase rhlE [Gluconacetobacter diazotrophicus
PAl 5]
gi|161787346|emb|CAP56941.1| putative ATP-dependent RNA helicase rhlE [Gluconacetobacter
diazotrophicus PAl 5]
Length = 390
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 78/128 (60%), Gaps = 10/128 (7%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L ++R+ A + F T Q A LAR L+ T G + A ++ D +R+
Sbjct: 252 LLAVLRREAGGRTMVFTRTKQAADALARTLN------TGG----VTAAALHGDHGQVRRD 301
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+ + +FRR ++ ++VA+D +ARGIDVE + +V+N++ P+ + YIHRIGRTAR GR+GT+
Sbjct: 302 RTLDDFRRGRLLVLVATDVMARGIDVEGVALVVNFDIPEQPETYIHRIGRTARAGRRGTA 361
Query: 224 VTLVTTHE 231
++L E
Sbjct: 362 LSLCDPAE 369
>gi|296502998|ref|YP_003664698.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
gi|296324050|gb|ADH06978.1| ATP-dependent RNA helicase [Bacillus thuringiensis BMB171]
Length = 455
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 161 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 208
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 209 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 254
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 255 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 304
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 305 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 349
>gi|456063468|ref|YP_007502438.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
gi|455440765|gb|AGG33703.1| DEAD/DEAH box helicase domain-containing protein [beta
proteobacterium CB]
Length = 427
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S + + L L P L E N ++ I
Sbjct: 177 PKQRQNLLFSATFSTEIKALADGLLNSPALI-----------------EVARSNSTNEAI 219
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P + ++K PL L LI+ + Q VL F T GA++L L
Sbjct: 220 AQLIHPVDRNQK--------HPL-LAHLIKSNQWQQVLVFTRTKHGANKLVTQLEKDGIT 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R K + EF+ KI ++VA+D ARGID++ + V+NY+
Sbjct: 271 AMAIHGNKSQSA----------RTKALAEFKDGKITVLVATDIAARGIDIDQLPHVVNYD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 321 LPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDE 352
>gi|359419992|ref|ZP_09211936.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
gi|358244096|dbj|GAB10005.1| putative ATP-dependent RNA helicase [Gordonia araii NBRC 100433]
Length = 534
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 76/132 (57%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G + V+ DL
Sbjct: 268 KAELVARVLQADGRGATMIFTRTKRTAQKVA------DDLAERG----FAVGAVHGDLGQ 317
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + FR KID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 318 VAREKALSAFREGKIDVLVATDVAARGIDIDDVTHVINYQCPEDDKTYVHRIGRTGRAGR 377
Query: 220 QGTSVTLVTTHE 231
G ++TLV E
Sbjct: 378 TGIAITLVDWDE 389
>gi|453382028|dbj|GAC83496.1| putative ATP-dependent RNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 565
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G + V+ DL
Sbjct: 276 KAELVARILQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FKVGAVHGDLGQ 325
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K +++FR ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 326 VAREKALKKFRDGSIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 385
Query: 220 QGTSVTLVTTHE 231
G +VTLV E
Sbjct: 386 TGIAVTLVDWDE 397
>gi|380695433|ref|ZP_09860292.1| ATP-dependent RNA helicase [Bacteroides faecis MAJ27]
Length = 422
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 103/213 (48%), Gaps = 39/213 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSAT+ P K+ QL A T P +
Sbjct: 178 PKERQTIMFSATM---PAKIQQL--------------AKTILNNPAEIKLAV-------- 212
Query: 80 GKFTTPAE-LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ PA+ + + C N K ++ L + V+ F ++ + + L +
Sbjct: 213 ---SRPADKIIQAAYVCYENQKLGIIRSLFTDEVPERVIIFASSKIKVKEVTKALKMM-- 267
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K+N+ E++SDL+ QR ++ EF+ +I+++VA+D +ARGID+++I +VIN+
Sbjct: 268 --------KLNVGEMHSDLEQAQREVVMHEFKAGRINILVATDIVARGIDIDDIRLVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + + Y+HRIGRTAR G ++T V+ E
Sbjct: 320 DVPHDSEDYVHRIGRTARANNDGVALTFVSEKE 352
>gi|289192981|ref|YP_003458922.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
gi|288939431|gb|ADC70186.1| DEAD/DEAH box helicase domain protein [Methanocaldococcus sp.
FS406-22]
Length = 362
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 91/164 (55%), Gaps = 16/164 (9%)
Query: 73 NLSSGFIGKFT-----TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAH 127
NL+ ++G ++ A + + + N + VL ++++ G L F T +
Sbjct: 189 NLAKKYMGDYSFIKAKINANIEQSYIEVNENERFEVLCRILKNKDFYG-LVFCKTKKDTK 247
Query: 128 RLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGI 187
LA +L I A GA ++ DL QR K+I+ F++++I +++A+D ++RGI
Sbjct: 248 ELANMLRDIGFKA--GA--------IHGDLNQSQREKVIRLFKQKRIKILIATDVMSRGI 297
Query: 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
DV +++ VINY P N + Y+HRIGRT R G++G +++++ E
Sbjct: 298 DVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 341
>gi|410446614|ref|ZP_11300717.1| putative ATP-dependent RNA helicase RhlE [SAR86 cluster bacterium
SAR86E]
gi|409980286|gb|EKO37037.1| putative ATP-dependent RNA helicase RhlE [SAR86 cluster bacterium
SAR86E]
Length = 436
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 101/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
PS Q LLFSAT S + +KL + L + +VE A SE+
Sbjct: 176 PSDRQNLLFSATFSPEIKKLAKT------LGSDLVEIA---------SESAN-------- 212
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + + + N K +L LI L F T G+ ++A+ L
Sbjct: 213 ---TTVNAIKQIVYKVDRNQKSNLLSHLIHSEQWPQALVFSRTKHGSEKIAKKL------ 263
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+++ A ++ D R + ++EF+ + + ++VA+D ARGID+ N+ V+N++
Sbjct: 264 ----IASEIKTATIHGDKTQGARTRALREFKEKDVQVLVATDVAARGIDISNLPYVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P YIHRIGRT R G+QGT+++ ++ E
Sbjct: 320 MPTYPNDYIHRIGRTGRAGKQGTAISFLSIEE 351
>gi|421617199|ref|ZP_16058195.1| DEAD/DEAH box helicase, partial [Pseudomonas stutzeri KOS6]
gi|409780930|gb|EKN60543.1| DEAD/DEAH box helicase, partial [Pseudomonas stutzeri KOS6]
Length = 457
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S D + + AG P E N
Sbjct: 141 PAKRQNLLFSATFSKD-----------------ITDLAGKLLHNPERIEVTPPN------ 177
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT + ++L + + K +L LI + A + VL F T GA+RLA L
Sbjct: 178 ---TTVERIEQRLFRVAASHKRALLAHLITQGAWEQVLVFTRTKHGANRLAEYLEK---- 230
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + + R K + +F+ ++ ++VA+D ARG+D++ + V+N+E
Sbjct: 231 ------HGLPAAAIHGNKSQNARTKALADFKANQVRILVATDIAARGLDIDQLPHVVNFE 284
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R GR G +++LV E
Sbjct: 285 LPNVEEDYVHRIGRTGRAGRSGEAISLVAPDE 316
>gi|372270358|ref|ZP_09506406.1| DEAD/DEAH box helicase [Marinobacterium stanieri S30]
Length = 576
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 10/152 (6%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ T + + ++ T K L +++ H + L FV T LA L+
Sbjct: 215 AQTATASTIRQRTWTVRGMSKTQALTRILELHEHEAALVFVRTKTATESLAEELNQ---- 270
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
AG A ++ D+ QR +I+ + ++ ++D+V+A+D +ARG+DVE I VINY+
Sbjct: 271 ----AG--FPAAALHGDIAQAQRERIVSKLKKGELDVVIATDVVARGLDVERISHVINYD 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + YIHRIGRT R GR+G ++ VT E
Sbjct: 325 IPYDTESYIHRIGRTGRAGREGDAILFVTNRE 356
>gi|326794221|ref|YP_004312041.1| DEAD/DEAH box helicase [Marinomonas mediterranea MMB-1]
gi|326544985|gb|ADZ90205.1| DEAD/DEAH box helicase domain protein [Marinomonas mediterranea
MMB-1]
Length = 453
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT + +KL + L QPK T++ + A + I
Sbjct: 203 PKQRQTLLFSATFAPPIKKLAKKILNQPKDVTTIQKAAAKPN-----------------I 245
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ P + K +L +L+ + V+ F NT + A +A+ L+ D +
Sbjct: 246 NQWLHPVDKKRKTE---------LLLELLNRKPHAQVIVFTNTKKNADLVAQALNQ-DGI 295
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ GA ++SD D+R + +F+ +I ++VA+D ARGID++N+ +VINY+
Sbjct: 296 SA-GA--------LHSDRTQDERIHVFDQFKNNEISILVATDVAARGIDIQNLPLVINYD 346
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHRIGRT R G G + ++ + E
Sbjct: 347 LPKVSEDYIHRIGRTGRAGHAGQAFSIASADE 378
>gi|30020539|ref|NP_832170.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|229127843|ref|ZP_04256829.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
gi|29896090|gb|AAP09371.1| ATP-dependent RNA helicase [Bacillus cereus ATCC 14579]
gi|228655608|gb|EEL11460.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-Cer4]
Length = 458
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|379710489|ref|YP_005265694.1| putative ATP-dependent RNA helicase (fragment) [Nocardia
cyriacigeorgica GUH-2]
gi|374847988|emb|CCF65060.1| putative ATP-dependent RNA helicase (fragment) [Nocardia
cyriacigeorgica GUH-2]
Length = 607
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 77/132 (58%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K ++ ++++ + F T + A ++A D++A +G + V+ DL
Sbjct: 274 KSELVARVLQAEGRGATMIFTRTKRTAQKVA------DDLAERG----FAVGAVHGDLGQ 323
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +FR+ ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR
Sbjct: 324 IAREKALAKFRKGTIDVLVATDVAARGIDIDDVTHVINYQCPEDEKTYVHRIGRTGRAGR 383
Query: 220 QGTSVTLVTTHE 231
G +VTL+ E
Sbjct: 384 TGVAVTLIDWDE 395
>gi|356555223|ref|XP_003545934.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 36-like [Glycine
max]
Length = 591
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 106/219 (48%), Gaps = 39/219 (17%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
F P Q L FSAT + + +KL +Q K++ V A G
Sbjct: 239 FQCLPENRQNLFFSATTTSNLQKLR--GRYQDKMY---VYEAYEG--------------- 278
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV---LCFVNTAQGAHRLARL 132
F T L ++ +K + L ++ K G+ + F++T + HRL+ +
Sbjct: 279 ------FKTVETLKQQAIFIPKKVKDVYLMHILDKMEDMGIRSAIVFISTCRDCHRLSLM 332
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L +D A A +YS QR + + +F+ K+ +++A+D +RG+D+ +
Sbjct: 333 LEVLDQEA----------AALYSFKSQAQRLEALHQFKSGKVSILLATDVASRGLDIPTV 382
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
D+VINY+ P + YIHR+GRTAR GR G +++LVT ++
Sbjct: 383 DLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQND 421
>gi|353328381|ref|ZP_08970708.1| ATP-dependent RNA helicase, DeaD/DeaH box family protein [Wolbachia
endosymbiont wVitB of Nasonia vitripennis]
Length = 408
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q L+FSATL + KL + L QP+ + D Q T+S +
Sbjct: 174 PKIRQNLMFSATLPGEIVKLTEKYLNQPERVSV--------DCQATTSVKIKQEVV---- 221
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + +E KL T QL ++ ++ FV T +GA +LA LH D
Sbjct: 222 --YASESEKYGKLVT-----------QLCQRKG--SIIIFVKTKRGADQLADKLHKDDYS 266
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A ++ DL+ +R ++I FRR + ++VA+D +RG+D+ +I VINY+
Sbjct: 267 AL----------AIHGDLRQHKRERVIDSFRRGRNQIMVATDVASRGLDIPHIQHVINYD 316
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRTAR G +G +++ VT +
Sbjct: 317 VPQSQADYVHRIGRTARAGAEGFALSFVTPQD 348
>gi|330831232|ref|YP_004394184.1| DEAD box family ATP-dependent RNA helicase [Aeromonas veronii B565]
gi|423208115|ref|ZP_17194669.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
gi|328806368|gb|AEB51567.1| ATP-dependent RNA helicase, DEAD box family [Aeromonas veronii
B565]
gi|404619162|gb|EKB16078.1| hypothetical protein HMPREF1169_00187 [Aeromonas veronii AER397]
Length = 406
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/212 (31%), Positives = 102/212 (48%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P+ Q LLFSATL + E L L +PT EA N
Sbjct: 171 PADRQTLLFSATLPAELETLANGLL-----------------REPTRIEANPLN------ 207
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ E+ E+L + + K L L+++ A VL F++ A D V
Sbjct: 208 ---SVVNEIEERLYLVNKSSKVPALISLLKEQAWPQVLVFISARDDA----------DGV 254
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A K A + +A ++ + + R + + +F+ KI ++VA+D +ARGI VE + VVIN +
Sbjct: 255 ARKLAKAGIAVAALHGEKEQAVREQALGDFKEGKIRVLVATDLMARGIHVEALPVVINLD 314
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + Y+HRIGRTAR GR+G +++LV E
Sbjct: 315 LPASAPVYVHRIGRTARAGREGLAISLVCHGE 346
>gi|330818246|ref|YP_004361951.1| DEAD/DEAH box helicase [Burkholderia gladioli BSR3]
gi|327370639|gb|AEA61995.1| DEAD/DEAH box helicase domain-containing protein [Burkholderia
gladioli BSR3]
Length = 505
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S + + L L P L E N
Sbjct: 179 PAKRQNLLFSATFSDEIKALADSLLDSPALI-----------------EVARRN------ 215
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
TT +++K+ + K +L LIR+H VL F T GA+RLA L
Sbjct: 216 ---TTAETIAQKIYPVDRDRKRELLTHLIREHNWFQVLVFTRTKHGANRLAEQLGKDGIS 272
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A G K A R + + EF+ + ++VA+D ARGID++ + V+NYE
Sbjct: 273 ALAIHGNKSQSA----------RTRALTEFKAGTLQVLVATDIAARGIDIDQLPHVVNYE 322
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +V+LV E
Sbjct: 323 LPNVPEDYVHRIGRTGRAGANGEAVSLVCVDE 354
>gi|304390841|ref|ZP_07372793.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315656383|ref|ZP_07909272.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304325724|gb|EFL92970.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315492942|gb|EFU82544.1| ATP-dependent RNA helicase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 525
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 33/208 (15%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R +LFSAT+ L + ++QP + T PT S
Sbjct: 207 PPRRHTMLFSATMPGPVVALARRYMYQPTHIRA---------TDPTDSS----------- 246
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T ++ + + + K V+ ++++ + F T + RL+ D +
Sbjct: 247 ---QTVRQVKQVVYRVHSLNKTEVIARILQARNRGLTIIFTRTKRTCQRLS------DEL 297
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A +G T ++ DL + R + ++ FR K+D++VA+D ARGIDV+++ VINYE
Sbjct: 298 AERGFAT----GAIHGDLGQNARERALRAFRHGKVDVLVATDVAARGIDVDDVTHVINYE 353
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
P++ K YIHRIGRTAR G +G+++T +
Sbjct: 354 CPEDDKTYIHRIGRTARAGNKGSAITFI 381
>gi|86144457|ref|ZP_01062789.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
gi|85837356|gb|EAQ55468.1| ATP-dependent RNA helicase RhlE [Vibrio sp. MED222]
Length = 523
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D L + + P + V PA + T PT
Sbjct: 176 PKKRQNLLFSATFSDDIRSLAKGLVNNPVEIS--VSPANS--TAPT-------------- 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + + K +L +LI+ + + VL F T GA++LAR L D
Sbjct: 218 --------VEQSIYPVDKKKKAPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQD-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K ++ F+ K+ ++VA+D ARGID+ + V+N++
Sbjct: 268 --------ITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV E
Sbjct: 320 LPNVSEDYVHRIGRTGRAGEVGKAISLVCADE 351
>gi|228958720|ref|ZP_04120433.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|423627497|ref|ZP_17603246.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
gi|228800935|gb|EEM47839.1| ATP-dependent RNA helicase [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|401271716|gb|EJR77723.1| hypothetical protein IK5_00349 [Bacillus cereus VD154]
Length = 458
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|229044202|ref|ZP_04191878.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
gi|229145047|ref|ZP_04273440.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228638368|gb|EEK94805.1| ATP-dependent RNA helicase [Bacillus cereus BDRD-ST24]
gi|228725143|gb|EEL76424.1| ATP-dependent RNA helicase [Bacillus cereus AH676]
Length = 458
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|432110218|gb|ELK33991.1| Putative ATP-dependent RNA helicase DDX27 [Myotis davidii]
Length = 863
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 70/116 (60%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 435 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLESLRRFKDEQID 484
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR G+ G SV+LV E
Sbjct: 485 ILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGKAGRSVSLVGEEE 540
>gi|218676102|ref|YP_002394921.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
gi|218324370|emb|CAV25741.1| ATP-dependent RNA helicase [Vibrio splendidus LGP32]
Length = 523
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P + Q LLFSAT S D L + + P + V PA + T PT
Sbjct: 176 PKKRQNLLFSATFSDDIRSLAKGLVNNPVEIS--VSPANS--TAPT-------------- 217
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + + K +L +LI+ + + VL F T GA++LAR L D
Sbjct: 218 --------VEQSIYPVDKKKKAPMLAKLIKDNDWRQVLVFSKTKHGANKLARFLEEQD-- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ A ++ + R K ++ F+ K+ ++VA+D ARGID+ + V+N++
Sbjct: 268 --------ITSAPIHGNKSQGARTKALENFKTGKVRVLVATDIAARGIDIPQLPQVVNFD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R G G +++LV E
Sbjct: 320 LPNVSEDYVHRIGRTGRAGEVGKAISLVCADE 351
>gi|146417127|ref|XP_001484533.1| hypothetical protein PGUG_03914 [Meyerozyma guilliermondii ATCC
6260]
Length = 705
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/207 (29%), Positives = 103/207 (49%), Gaps = 37/207 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q +LFSAT++ + L QLSL +P +V P + A L F+
Sbjct: 379 QTMLFSATMNTKIQDLIQLSLDKP--VRIMVNPP----------KQAASKLVQEFVR--- 423
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR---KHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+LKP +LY L+R ++ FV+ + AHRL +L +
Sbjct: 424 ---------IRKREHLKPALLYHLLRLVDPQQQNRIVVFVSRKEMAHRLRIVLGLLG--- 471
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
M + E++ L +QR + +++FR + +++ +D ARG+D+ I++VIN++
Sbjct: 472 -------MKVLELHGSLTQEQRLQSVKDFRSLAVPVLICTDLAARGLDIPKIEIVINFDM 524
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P + Y+HR+GRTAR GR+G S+T V
Sbjct: 525 PKTHEIYLHRVGRTARAGREGRSITFV 551
>gi|196039972|ref|ZP_03107275.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
gi|196029231|gb|EDX67835.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Bacillus cereus
NVH0597-99]
Length = 458
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|404405627|ref|ZP_10997211.1| DNA/RNA helicase [Alistipes sp. JC136]
Length = 482
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 37/212 (17%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q ++FSATL P K+ +L+ T + PA +EA
Sbjct: 178 PKERQTIMFSATL---PPKIRELAK------TILRNPAEVNIAISKPNEA---------- 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ + C + K ++ +L + + F ++ LA L +
Sbjct: 219 --------IDQSAYICYESQKLGIIRELFAEPTDSKTIIFSSSKLKVKELAHTLKRM--- 267
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
K+++A ++SDL+ +R +++ FR KI ++VA+D +ARGID+E+I +V+NY+
Sbjct: 268 -------KLDVAAMHSDLEQSEREEVMLNFRNNKIRILVATDIVARGIDIEDIGLVLNYD 320
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + + YIHRIGRTAR G++VT V+ E
Sbjct: 321 VPHDPEDYIHRIGRTARAAATGSAVTFVSEEE 352
>gi|444731361|gb|ELW71716.1| putative ATP-dependent RNA helicase DDX27 [Tupaia chinensis]
Length = 735
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 103/209 (49%), Gaps = 35/209 (16%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
Q +LFSAT++ + + L +SL P ++F + D P L FI
Sbjct: 341 QTMLFSATMTDEVKDLASVSLKNPVRIFVN-----SNTDVAPF--------LRQEFI--- 384
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
++ + ++ L+ + V+ F T + AHR+ +L +
Sbjct: 385 --------RIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHIVLGLMG----- 431
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ +L QR + ++ F+ +ID++VA+D ARG+D+E + VIN+ P+
Sbjct: 432 -----LQVGELHGNLSQTQRLEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPN 486
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 487 TIKHYVHRVGRTARAGRAGRSVSLVGEEE 515
>gi|229091449|ref|ZP_04222660.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
gi|228691890|gb|EEL45636.1| ATP-dependent RNA helicase [Bacillus cereus Rock3-42]
Length = 454
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|157374161|ref|YP_001472761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157316535|gb|ABV35633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 435
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 101/208 (48%), Gaps = 36/208 (17%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83
Q LLFSAT S +KL L +PKL SV T DT + +
Sbjct: 181 QNLLFSATFSSAVKKLANDMLVKPKLI-SVDSQNSTADT----------------VSQVV 223
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
P E K +L +LI K Q VL F T A +L + L+ +D + +
Sbjct: 224 YPVEQRRKRE---------LLSELIGKKNWQQVLVFTATRDAADKLVKELN-LDGITS-- 271
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
A V+ + R + ++EF+ K+ +VA++ ARG+D+++++ V+NY+ P
Sbjct: 272 -------AVVHGEKAQGNRRRALREFKEGKVRALVATEVAARGLDIQDLEYVVNYDLPFL 324
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRT R G+ G +++LV+ E
Sbjct: 325 AEDYVHRIGRTGRAGKSGVAISLVSREE 352
>gi|229184685|ref|ZP_04311885.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
gi|228598789|gb|EEK56409.1| ATP-dependent RNA helicase [Bacillus cereus BGSC 6E1]
Length = 447
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 161 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 208
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 209 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 254
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 255 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 304
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 305 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 349
>gi|221062043|ref|XP_002262591.1| DEAD/DEAH box helicase (fragment) [Plasmodium knowlesi strain H]
gi|193811741|emb|CAQ42469.1| DEAD/DEAH box helicase, putative (fragment) [Plasmodium knowlesi
strain H]
Length = 555
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 48/228 (21%)
Query: 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81
+ Q L FSATL+ D ++L SL P S G DN K
Sbjct: 325 KKQILFFSATLTRDIKELANFSLKNPIFIQS-----------------GVDN------RK 361
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
+ E+ + +C +N K L +++ K + FVN +R A LLH NV
Sbjct: 362 VDSKGEI---IPSCISNKKILKSFKISEKLNQE----FVNIVNEKYRRAALLHLCSNVYK 414
Query: 142 KGA----GTK--------------MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183
A TK AE++ L +R + I +F++ ++D ++ ++
Sbjct: 415 NHAIIFFKTKKETHLMYLIFSLFNFKCAELHGSLTQKKRIESILKFKKNEVDFLLCTELA 474
Query: 184 ARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+RG+D+++I VINY P N+ KY+HRIGRTAR G+ GTS TL +E
Sbjct: 475 SRGLDIDHILYVINYNLPSNVIKYVHRIGRTARIGKDGTSSTLYRPNE 522
>gi|407002375|gb|EKE19149.1| DEAD/DEAH box helicase-like protein [uncultured bacterium]
Length = 406
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 94/212 (44%), Gaps = 39/212 (18%)
Query: 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLS 75
L P R Q L FSATL+ + EKL Q L P K+ E + D + G D +
Sbjct: 233 LVAPKR-QTLFFSATLAPEIEKLIQEFLVDPVKISIKTRETSANIDQDVVRVKQGEDKIE 291
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
VL L+RK VL F T GA +L+ +L
Sbjct: 292 ---------------------------VLQDLLRKANFSKVLIFSRTKHGAEKLSVIL-- 322
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ ++ D +R K ++ F+ ID++VA+D ARG+D+ ++ V
Sbjct: 323 --------SKNGFKAQSIHGDKSHAKRQKALKLFKENYIDILVATDVAARGLDIPDVSHV 374
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
IN++ P Y+HRIGRT R G+ GT++T V
Sbjct: 375 INFDVPATYDDYVHRIGRTGRAGKTGTALTFV 406
>gi|423482311|ref|ZP_17459001.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
gi|401143615|gb|EJQ51149.1| hypothetical protein IEQ_02089 [Bacillus cereus BAG6X1-2]
Length = 442
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPDSKQTMLFSATMPKDIKKLAKRYMEEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|281207583|gb|EFA81766.1| putative RNA helicase [Polysphondylium pallidum PN500]
Length = 802
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
C N K L+ + K + + F+ T G + L R + AG K A ++
Sbjct: 624 CEKNDKQQRLFSFLEKVGDEKCIIFMETKNGVNLLQRNMQV--------AGFK--CAGIH 673
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
D +R+ +Q+F++ I +++A+D +RG+DV++I VINY+ P+ I+ YIHRIGRT
Sbjct: 674 GDKTQGERDYSLQQFKKSGIQMLIATDVASRGLDVKDIKYVINYDFPNTIESYIHRIGRT 733
Query: 215 ARGGRQGTSVTLVTTHE 231
R G GT+ TL TT++
Sbjct: 734 GRAGATGTAFTLFTTND 750
>gi|388567718|ref|ZP_10154148.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
gi|388265047|gb|EIK90607.1| DEAD/DEAH box helicase domain protein [Hydrogenophaga sp. PBC]
Length = 482
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 70/125 (56%), Gaps = 10/125 (8%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L Q++R ++ FVN+ G RLAR L +N A ++ D D+R
Sbjct: 240 LRQILRDRGLKQAFVFVNSKLGCARLARSLER----------DGLNTAALHGDKSQDERL 289
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
K + F++ +DL+V +D ARG+D++++ V N++ P N + Y+HRIGRT R G G +
Sbjct: 290 KALDAFKQGNVDLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLA 349
Query: 224 VTLVT 228
V+ V+
Sbjct: 350 VSFVS 354
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 20/200 (10%)
Query: 32 LSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91
LS+ PE+ Q +LF + +++E P + L+ I ++ S K
Sbjct: 172 LSNVPEE-RQTALFSATMPKAILELTKKYQKDPVHIKVVRKTLTVSNIKQYYIETRKSNK 230
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
L VL +L+ + + + F NT +GA L + ++ +G G
Sbjct: 231 LE---------VLTRLLDVYNPKLTVVFTNTKKGADEL------VSSLQARGYGAD---- 271
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
++ DLK QR+ ++ +FR ID++VA+D ARGID+++++ VINYE P + + Y+HRI
Sbjct: 272 SLHGDLKQVQRDIVMDKFRAGTIDILVATDVAARGIDIDDVECVINYELPQDDEYYVHRI 331
Query: 212 GRTARGGRQGTSVTLVTTHE 231
GRT R GR+G + + E
Sbjct: 332 GRTGRAGREGIAFSFAFGRE 351
>gi|407704916|ref|YP_006828501.1| hypothetical protein MC28_1680 [Bacillus thuringiensis MC28]
gi|407382601|gb|AFU13102.1| ATP-dependent RNA helicase [Bacillus thuringiensis MC28]
Length = 450
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|337278667|ref|YP_004618138.1| ATP-dependent RNA helicase [Ramlibacter tataouinensis TTB310]
gi|334729743|gb|AEG92119.1| Candidate ATP-dependent RNA helicase [Ramlibacter tataouinensis
TTB310]
Length = 486
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 37/214 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P + LLFSAT S + ++L L P + V P T T
Sbjct: 184 ILSYLPKQRTTLLFSATFSPEIKRLANSYLKDP-VTIEVARPNETAST------------ 230
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
+ + + + + K L Q++R+ + FVN+ G RLAR L
Sbjct: 231 -------------VEQHFYSVTDDDKRRALKQIVRQRGITQAFVFVNSKLGCARLARSLE 277
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ ++ D D+R K + F+ ++DL+VA+D ARG+D++++
Sbjct: 278 R----------EGLKTTALHGDKSQDERLKALAAFKAGEVDLLVATDVAARGLDIKDVPA 327
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
V N++ P N + Y+HRIGRT R G G +VT V+
Sbjct: 328 VFNFDVPFNAEDYVHRIGRTGRAGASGLAVTFVS 361
>gi|7020811|dbj|BAA91284.1| unnamed protein product [Homo sapiens]
Length = 406
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL + + + E++ +L QR + ++ F+ +ID
Sbjct: 76 VMLFTQTKKQAHRMHILLGLMG----------LQVGELHGNLSQTQRLEALRRFKDEQID 125
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P IK Y+HR+GRTAR GR G SV+LV E
Sbjct: 126 ILVATDVAARGLDIEGVKTVINFTMPSTIKHYVHRVGRTARAGRAGRSVSLVGEDE 181
>gi|423617263|ref|ZP_17593097.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
gi|401255938|gb|EJR62153.1| hypothetical protein IIO_02589 [Bacillus cereus VD115]
Length = 442
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
>gi|289676388|ref|ZP_06497278.1| helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal, partial
[Pseudomonas syringae pv. syringae FF5]
Length = 435
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 40/214 (18%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P++ Q LLFSAT S+D L L P+ T P
Sbjct: 182 PAKRQNLLFSATFSNDITSLAGKLLHNPERIEV---------TPPN-------------- 218
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHID 137
TT + +++ + N K +L LI A + VL F T GA+RLA L H +
Sbjct: 219 ---TTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLA 275
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
VA G ++ + R K + +F+ + ++VA+D ARG+D++ + V+N
Sbjct: 276 AVAIHGNKSQ------------NARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVN 323
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+E P+ + Y+HRIGRT R GR G +++LV E
Sbjct: 324 FELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
>gi|83720702|ref|YP_441535.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
gi|83654527|gb|ABC38590.1| ATP-dependent RNA helicase RhlE [Burkholderia thailandensis E264]
Length = 571
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 36/212 (16%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT S + +KL L P+ E N ++ +
Sbjct: 280 PKERQTLLFSATFSPEIKKLASTYLRNPQTI-----------------EVARSNAAASTV 322
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
++ + + K + +LIR +++ V+ F N+ GA RLAR + V
Sbjct: 323 ---------TQIVYDVAEGDKQAAVVKLIRDRSLKQVIVFCNSKIGASRLARQIERDGIV 373
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A A ++ D +R + + F+R +I+ +VA+D ARG+D+ + VIN++
Sbjct: 374 A----------AAIHGDRSQSERMQALDAFKRGEIEALVATDVAARGLDIAELPAVINFD 423
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N + Y+HRIGRT R G G +++L + +E
Sbjct: 424 LPFNAEDYVHRIGRTGRAGASGDALSLCSPNE 455
>gi|264679797|ref|YP_003279706.1| hypothetical protein CtCNB1_3664 [Comamonas testosteroni CNB-2]
gi|262210312|gb|ACY34410.1| hypothetical conserved protein [Comamonas testosteroni CNB-2]
Length = 453
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 37/217 (17%)
Query: 16 FLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNL 74
L+Y P LLFSAT S + ++L AG+ P + E N
Sbjct: 157 ILSYLPKSRTTLLFSATFSPEIKRL-----------------AGSYLQDPVTIEVARPN- 198
Query: 75 SSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134
T + + ++ + + K + ++++ ++ F N+ G RL R L
Sbjct: 199 --------ETASTVEQRFYKVTDDDKRYAIRSVLKERDIRQAFIFSNSKLGCARLTRALE 250
Query: 135 HIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV 194
+ A ++ D D+R K ++ F+ ++DL+V +D ARG+D++++
Sbjct: 251 R----------DGLRAAALHGDKSQDERLKALEAFKAGEVDLLVCTDVAARGLDIKDVPA 300
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
V NY+ P N + Y+HRIGRT R G G +VTLVT H+
Sbjct: 301 VFNYDVPFNAEDYVHRIGRTGRAGASGLAVTLVTDHD 337
>gi|302917131|ref|XP_003052376.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
gi|256733315|gb|EEU46663.1| hypothetical protein NECHADRAFT_1180 [Nectria haematococca mpVI
77-13-4]
Length = 768
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 107/213 (50%), Gaps = 37/213 (17%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPK--LFTSVVEPAGTGDTQPTSSEAGADNLS 75
T P Q +LFSAT++ ++L ++ + +P + S + GT + G +
Sbjct: 428 TLPKSRQTMLFSATMTSTVDRLIRVGMNKPARVMVDSQKKTVGTLVQEFVRLRPGREEKR 487
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
G++ C T LY+ + V+ F + AHR AR++
Sbjct: 488 MGYLAYI------------CKT------LYR-------ERVIIFFRQKKEAHR-ARIIFG 521
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ ++ AE++ + QR ++EFR K+ ++A+D +RG+D++ +D V
Sbjct: 522 L---------LGLSCAELHGSMNQTQRISSVEEFRDGKVSYLLATDLASRGLDIKGVDTV 572
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INYEAP +++ Y+HR+GRTAR GR+GT++TL
Sbjct: 573 INYEAPQSLEIYVHRVGRTARAGRKGTAITLAA 605
>gi|423655270|ref|ZP_17630569.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
gi|401293332|gb|EJR98976.1| hypothetical protein IKG_02258 [Bacillus cereus VD200]
Length = 454
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 36/225 (16%)
Query: 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTS 66
G L + D P Q +LFSAT+ D +KL + + +P++ Q S
Sbjct: 164 GFLYDIEDILDETPGSKQTMLFSATMPKDIKKLAKRYMDEPQMI------------QVQS 211
Query: 67 SEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGA 126
E D + +++ + KP L ++ + + F T A
Sbjct: 212 EEVTVDTIE--------------QRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRA 257
Query: 127 HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186
+L DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG
Sbjct: 258 SKL------YDNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARG 307
Query: 187 IDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+DV+ + V NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 308 LDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,510,888,806
Number of Sequences: 23463169
Number of extensions: 139223666
Number of successful extensions: 428109
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 31423
Number of HSP's successfully gapped in prelim test: 2755
Number of HSP's that attempted gapping in prelim test: 382383
Number of HSP's gapped (non-prelim): 40733
length of query: 231
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 93
effective length of database: 9,121,278,045
effective search space: 848278858185
effective search space used: 848278858185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)