BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9509
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 16/164 (9%)
Query: 73 NLSSGFIGKFT-----TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAH 127
NL+ + G ++ A + + + N + L +L++ G L F T +
Sbjct: 194 NLAKKYXGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFYG-LVFCKTKRDTK 252
Query: 128 RLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGI 187
LA L I A GA ++ DL QR K+I+ F+++KI +++A+D +RGI
Sbjct: 253 ELASXLRDIGFKA--GA--------IHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGI 302
Query: 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
DV +++ VINY P N + Y HRIGRT R G++G +++++ E
Sbjct: 303 DVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRRE 346
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 73/122 (59%), Gaps = 14/122 (11%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
Q +R++ +GV+ FV T +R+A+L+ DN E+ DL RN+
Sbjct: 213 QALRENKDKGVIVFVRTR---NRVAKLVRLFDNAI-----------ELRGDLPQSVRNRN 258
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I FR + D+++ +D +RG+D+ ++ VIN++AP +++ YIHRIGRT R GR+G ++T
Sbjct: 259 IDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAIT 318
Query: 226 LV 227
+
Sbjct: 319 FI 320
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ V+E T P
Sbjct: 164 IYDVYRYLPPATQVVLISATLPHE-----------------VLEMTNKFMTDPIRILVKR 206
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 207 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 251
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 252 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 307
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G +V V
Sbjct: 308 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFV 344
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ ++E T P
Sbjct: 164 IYDVYRYLPPATQVVLISATLPHE-----------------ILEMTNKFMTDPIRILVKR 206
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 207 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 251
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 252 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 307
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G +V V
Sbjct: 308 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFV 344
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ ++E T P
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE-----------------ILEMTNKFMTDPIRILVKR 243
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 288
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 289 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 344
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 345 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ ++E T P
Sbjct: 179 IYDVYRYLPPATQVVLISATLPHE-----------------ILEMTNKFMTDPIRILVKR 221
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 222 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 266
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 267 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 322
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 323 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 359
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 77.0 bits (188), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ ++E T P
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE-----------------ILEMTNKFMTDPIRILVKR 243
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 244 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 288
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 289 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 344
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 345 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 77.0 bits (188), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 37/217 (17%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D + P Q +L SATL H+ ++E T P
Sbjct: 200 IYDVYRYLPPATQVVLISATLPHE-----------------ILEMTNKFMTDPIRILVKR 242
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
D L+ I +F E E K T L + Q + F NT +
Sbjct: 243 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV---------IFCNTKR------ 287
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV
Sbjct: 288 ----KVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVP 343
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ ++INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 344 QVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 380
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%)
Query: 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGR 213
++ +K +RNK+ EFR+ K+ +V SD L RGID++ ++VVIN++ P + Y+HRIGR
Sbjct: 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 348
Query: 214 TARGGRQGTSVTLV 227
+ R G G ++ L+
Sbjct: 349 SGRFGHLGLAINLI 362
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K +L L+++ + FV + H LA L + AG +N + ++
Sbjct: 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWL--------REAG--INNCYLEGEMVQ 66
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+RN+ I+ +++++VA+D ARGID+ ++ V N++ P + Y+HRIGRTAR GR
Sbjct: 67 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 126
Query: 220 QGTSVTLVTTHE 231
+GT+++LV H+
Sbjct: 127 KGTAISLVEAHD 138
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 48/72 (66%)
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+ R ++ EF+R + +VA+D ARGID+ENI +VINY+ P + Y+HR GRT R G
Sbjct: 72 EDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGN 131
Query: 220 QGTSVTLVTTHE 231
+G +++ VT E
Sbjct: 132 KGKAISFVTAFE 143
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 101/220 (45%), Gaps = 35/220 (15%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++ F P Q +L SAT+ +D V+E P
Sbjct: 184 IYQIFTLLPPTTQVVLLSATMPND-----------------VLEVTTKFMRNPVRILVKK 226
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
D L+ I +F E E C T+L Y I Q V+ F NT +
Sbjct: 227 DELTLEGIKQFYVNVEEEEYKYECLTDL-----YDSI--SVTQAVI-FCNTRR------- 271
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
++ + TK K ++ +YSDL +R+ I++EFR +++++D LARGIDV+
Sbjct: 272 ---KVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQ 328
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +VINY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 329 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L +++ + A G + FV T +GA LA L + T G ++ QR
Sbjct: 292 LIEILSEQA-DGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQ----------SQRE 340
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+ +++F+ + +++A+ +RG+D++NI VINY+ P I Y+HRIGRT R G G +
Sbjct: 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA 400
Query: 224 VTL 226
+
Sbjct: 401 TSF 403
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%)
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV-LCFVNTAQGAHRLARL 132
L+ G +G +T +++K+ + K L L+ + L FV T +GA L
Sbjct: 238 LAVGRVG--STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 295
Query: 133 LHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192
L+H T ++ D R + + +FR K ++VA+ ARG+D+ N+
Sbjct: 296 LYHEGYACTS----------IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNV 345
Query: 193 DVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
VIN++ P +I++Y+HRIGRT R G G + +
Sbjct: 346 KHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSF 379
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV-LCFVNTAQGAHRLARLLHHIDNVAT 141
+T +++K+ + K L L+ + L FV T +GA L L+H T
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
++ D R + + +FR K ++VA+ ARG+D+ N+ VIN++ P
Sbjct: 75 S----------IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLP 124
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTL 226
+I++Y+HRIGRT R G G + +
Sbjct: 125 SDIEEYVHRIGRTGRVGNLGLATSF 149
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 35/220 (15%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++ F P Q +L SAT +D V+E P
Sbjct: 183 IYQIFTLLPPTTQVVLLSATXPND-----------------VLEVTTKFXRNPVRILVKK 225
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
D L+ I +F E E C T+L Y I Q V+ F NT +
Sbjct: 226 DELTLEGIKQFYVNVEEEEYKYECLTDL-----YDSI--SVTQAVI-FCNTRR------- 270
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
++ + TK K ++ +YSDL +R+ I +EFR +++++D LARGIDV+
Sbjct: 271 ---KVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILISTDLLARGIDVQQ 327
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +VINY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 328 VSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
++R K I+ FR K D++VA+D ++G+D I VINY+ P+ I+ Y+HRIGRT G
Sbjct: 91 EERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGN 150
Query: 220 QGTSVTLV 227
G + T +
Sbjct: 151 TGIATTFI 158
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA-------PD 202
+A + ++ +QR +I+ FR K ++V ++ ARGIDVE + VVIN++ PD
Sbjct: 309 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 368
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTT 229
N + Y+HRIGRT R G++G +V +V +
Sbjct: 369 N-ETYLHRIGRTGRFGKRGLAVNMVDS 394
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 55/239 (23%)
Query: 1 MRRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTG 60
+ ++G+G I FL P Q +LFSAT + + + Q + +V A T
Sbjct: 158 LDQQGLGDQCIRVKRFL--PKDTQLVLFSATFA---DAVRQYA-------KKIVPNANTL 205
Query: 61 DTQPTSSEAGADNLSSGFIG------KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQ 114
+ Q ++E D + ++ KF EL +T S+
Sbjct: 206 ELQ--TNEVNVDAIKQLYMDCKNEADKFDVLTELYGVMTIGSS----------------- 246
Query: 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174
+ FV T + A+ L L K G +++I ++ DL+ +R+++I +FR +
Sbjct: 247 --IIFVATKKTANVLYGKL--------KSEGHEVSI--LHGDLQTQERDRLIDDFREGRS 294
Query: 175 DLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTARGGRQGTSVTLV 227
+++ ++ LARGID+ + +V+NY+ P + YIHRIGRT R GR+G +++ V
Sbjct: 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 111/239 (46%), Gaps = 55/239 (23%)
Query: 1 MRRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTG 60
+ ++G+G I FL P Q +LFSAT + + + Q + +V A T
Sbjct: 158 LDQQGLGDQCIRVKRFL--PKDTQLVLFSATFA---DAVRQYA-------KKIVPNANTL 205
Query: 61 DTQPTSSEAGADNLSSGFIG------KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQ 114
+ Q ++E D + ++ KF EL +T S+
Sbjct: 206 ELQ--TNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSS----------------- 246
Query: 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174
+ FV T + A+ L L K G +++I ++ DL+ +R+++I +FR +
Sbjct: 247 --IIFVATKKTANVLYGKL--------KSEGHEVSI--LHGDLQTQERDRLIDDFREGRS 294
Query: 175 DLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTARGGRQGTSVTLV 227
+++ ++ LARGID+ + +V+NY+ P + YIHRIGRT R GR+G +++ V
Sbjct: 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA-------PD 202
+A + ++ +QR +I+ FR K ++V ++ ARGIDVE + VVIN++ PD
Sbjct: 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 419
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTT 229
N + Y+HRIGRT R G++G +V +V +
Sbjct: 420 N-ETYLHRIGRTGRFGKRGLAVNMVDS 445
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA-------PD 202
+A + ++ +QR +I+ FR K ++V ++ ARGIDVE + VVIN++ PD
Sbjct: 330 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 389
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTT 229
N + Y+HRIGRT R G++G +V +V +
Sbjct: 390 N-ETYLHRIGRTGRFGKRGLAVNMVDS 415
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA-------PD 202
+A + ++ +QR +I+ FR K ++V ++ ARGIDVE + VVIN++ PD
Sbjct: 293 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPD 352
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTT 229
N + Y+HRIGRT R G++G +V +V +
Sbjct: 353 N-ETYLHRIGRTGRFGKRGLAVNMVDS 378
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 18/153 (11%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
I +F E E C T+L + Q V+ F NT + L
Sbjct: 4 IKQFYVNVEEEEYKYECLTDLYDSI-------SVTQAVI-FCNTRRKVEELT-------- 47
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
TK K ++ +YSDL +R+ I++EFR +++++D LARGIDV+ + +VINY
Sbjct: 48 --TKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINY 105
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 106 DLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 16/131 (12%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
VL +L + + FV T + A+ L L K G +++I ++ DL+ +R
Sbjct: 25 VLTELYGLMTIGSSIIFVATKKTANVLYGKL--------KSEGHEVSI--LHGDLQTQER 74
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTAR 216
+++I +FR + +++ ++ LARGID+ + +V+NY+ P + YIHRIGRT R
Sbjct: 75 DRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGR 134
Query: 217 GGRQGTSVTLV 227
GR+G +++ V
Sbjct: 135 FGRKGVAISFV 145
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
VL +L + + FV T + A+ L L K G +++I ++ DL+ +R
Sbjct: 27 VLTELYGLXTIGSSIIFVATKKTANVLYGKL--------KSEGHEVSI--LHGDLQTQER 76
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTAR 216
+++I +FR + +++ ++ LARGID+ + V+NY+ P + YIHRIGRT R
Sbjct: 77 DRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 136
Query: 217 GGRQGTSVTLV 227
GR+G +++ V
Sbjct: 137 FGRKGVAISFV 147
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 10/110 (9%)
Query: 119 FVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178
F N++Q LA+ K + + +++ ++ + RN++ +FR +V
Sbjct: 50 FCNSSQRVELLAK----------KISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLV 99
Query: 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+D RGID++ ++VVIN++ P + Y+HRIGR+ R G G ++ L+T
Sbjct: 100 CTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLAINLIT 149
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 16/131 (12%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
VL +L + + FV T + A+ L L K G +++I ++ DL+ +R
Sbjct: 26 VLTELYGVXTIGSSIIFVATKKTANVLYGKL--------KSEGHEVSI--LHGDLQTQER 75
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTAR 216
+++I +FR + +++ ++ LARGID+ + V+NY+ P + YIHRIGRT R
Sbjct: 76 DRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGR 135
Query: 217 GGRQGTSVTLV 227
GR+G +++ V
Sbjct: 136 FGRKGVAISFV 146
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + Y
Sbjct: 61 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 120
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
IHRIGRTAR G++G+SV + E
Sbjct: 121 IHRIGRTARSGKEGSSVLFICKDE 144
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + Y
Sbjct: 61 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 120
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
IHRIGRTAR G++G+SV + E
Sbjct: 121 IHRIGRTARSGKEGSSVLFICKDE 144
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + Y
Sbjct: 61 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 120
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
IHRIGRTAR G++G+SV + E
Sbjct: 121 IHRIGRTARSGKEGSSVLFICKDE 144
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 50/84 (59%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + Y
Sbjct: 316 LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANY 375
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
IHRIGRTAR G++G+SV + E
Sbjct: 376 IHRIGRTARSGKEGSSVLFICKDE 399
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + YIH
Sbjct: 369 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 428
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGRTAR G++G+SV + E
Sbjct: 429 RIGRTARSGKEGSSVLFICKDE 450
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------DNIKKYIH 209
+L +QR IIQ FR K +++ ++ ARGIDV+ + +V+N++ P + + Y+H
Sbjct: 67 ELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLH 126
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGRT R G++G + ++ E
Sbjct: 127 RIGRTGRFGKKGLAFNMIEVDE 148
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
I E + + ++R +++ F++ + ++V +D ARG+D N+ V+ P + YIH
Sbjct: 318 ILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIH 377
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGRTAR G++G+SV + E
Sbjct: 378 RIGRTARSGKEGSSVLFICKDE 399
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ +A + +A + +L+ QR+ I+ FR ++V ++ +ARGIDV +++V+
Sbjct: 371 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430
Query: 197 NYEAP------DNIKKYIHRIGRTARGGRQGTSVTLV 227
NY+ P + + Y+HRIGRT R GR G S+ V
Sbjct: 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFV 467
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D F S Q +L SAT+ D V+E P
Sbjct: 178 IYDIFQKLNSNTQVVLLSATMPSD-----------------VLEVTKKFMRDPIRILVKK 220
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
+ L+ I +F E E KL T + L + Q + F+NT + L
Sbjct: 221 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV---------IFINTRRKVDWLT 271
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+H D ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+
Sbjct: 272 EKMHARD----------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 321
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +VINY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 322 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 362
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
L + N K L+ L+ V+ FV + Q LA+LL N
Sbjct: 224 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRG 282
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
M E S R + ++F+RR ++VA++ RG+D+E +++ NY+ P++ Y
Sbjct: 283 MPQEERLS------RYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 333
Query: 208 IHRIGRTARGGRQGTSVTLVT 228
+HR+ R R G +G ++T V+
Sbjct: 334 LHRVARAGRFGTKGLAITFVS 354
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
L + N K L+ L+ V+ FV + Q LA+LL N
Sbjct: 225 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRG 283
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
M E S R + ++F+RR ++VA++ RG+D+E +++ NY+ P++ Y
Sbjct: 284 MPQEERLS------RYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 208 IHRIGRTARGGRQGTSVTLVT 228
+HR+ R R G +G ++T V+
Sbjct: 335 LHRVARAGRFGTKGLAITFVS 355
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 37/221 (16%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
++D F S Q +L SAT+ D V+E P
Sbjct: 204 IYDIFQKLNSNTQVVLLSATMPSD-----------------VLEVTKKFMRDPIRILVKK 246
Query: 72 DNLSSGFIGKFTTPAELSE-KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
+ L+ I +F E E KL T + L + Q + F+NT + L
Sbjct: 247 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAV---------IFINTRRKVDWLT 297
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+H D ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+
Sbjct: 298 EKMHARD----------FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ +VINY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 348 QVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
L + N K L+ L+ V+ FV + Q LA+LL N
Sbjct: 225 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRG 283
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
M E S R + ++F+RR ++VA++ RG+D+E +++ NY+ P++ Y
Sbjct: 284 MPQEERLS------RYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 208 IHRIGRTARGGRQGTSVTLVT 228
+HR+ R R G +G ++T V+
Sbjct: 335 LHRVARAGRFGTKGLAITFVS 355
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
L + N K L+ L+ V+ FV + Q LA+LL N
Sbjct: 6 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE-QNFPAIAIHRG 64
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
M E S R + ++F+RR ++VA++ RG+D+E +++ NY+ P++ Y
Sbjct: 65 MPQEERLS------RYQQFKDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 115
Query: 208 IHRIGRTARGGRQGTSVTLVT 228
+HR+ R R G +G ++T V+
Sbjct: 116 LHRVARAGRFGTKGLAITFVS 136
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 38/57 (66%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
++ D+ +R +++ FR+ ++ ++VA+D ARG+D+ +D+V++Y PD + Y H
Sbjct: 58 LHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 38/57 (66%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
++ DL +R +++ FR+ ++ ++VA+D ARG+D+ +D+V++Y PD + Y H
Sbjct: 61 LHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRK-HAMQGVLCFVNTAQGAHRL--ARLLHHIDNVATKGA 144
L++ L S+ +P + Y L+ K + ++ +V +G + +++ A +
Sbjct: 198 LNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQ 257
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
++ A ++ L+ + R + ++F+R + +VVA+ GI+ N+ V++++ P NI
Sbjct: 258 SKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI 317
Query: 205 KKYIHRIGRTARGG 218
+ Y GR R G
Sbjct: 318 ESYYQETGRAGRDG 331
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+++ A + ++ A ++ L+ + R + ++F+R + +VVA+ GI+ N+ V
Sbjct: 249 VEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRFV 308
Query: 196 INYEAPDNIKKYIHRIGRTARGG 218
++++ P NI+ Y GR R G
Sbjct: 309 VHFDIPRNIESYYQETGRAGRDG 331
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK---GAGTKMNIAEVY 154
LK ++ QL RK + ++ F N + A ++ L D + K G +K N
Sbjct: 347 KLKEIIREQLQRKQNSK-IIVFTNYRETAKKIVNELVK-DGIKAKRFVGQASKEN----- 399
Query: 155 SDLKFDQRNK--IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
D QR + I+ EF R + +++VA+ G+DV +D+V+ YE + + I R G
Sbjct: 400 -DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRG 458
Query: 213 RTAR 216
RT R
Sbjct: 459 RTGR 462
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P +EKLT L+ ++ Q R + F T Q A+ L++ + + A G
Sbjct: 376 PEYENEKLT----KLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGV 431
Query: 145 GTKMNIAEVYSD----LKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
I +S + +++ ++I +FR KI+L++A+ G+D++ ++VI Y
Sbjct: 432 KAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 489
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTAR 216
++R +I++ FR + +V+S L GIDV + +V + + ++YI R+GR R
Sbjct: 381 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 437
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTAR 216
++R +I++ FR + +V+S L GIDV + +V + + ++YI R+GR R
Sbjct: 146 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 202
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA 144
P +EKLT L+ + R + F T Q A+ L++ + DN
Sbjct: 126 PEYENEKLT----KLRNTIXEHFTRTEESARGIIFTKTRQSAYALSQWI--TDNKKFAEV 179
Query: 145 GTKMN-------IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
G K + +E + +QR ++I +FR KI+L++A+ G+D++ ++VI
Sbjct: 180 GVKAHHLIGAGHSSEFKPXTQNEQR-EVISKFRTGKINLLIATTVAEEGLDIKECNIVIR 238
Query: 198 Y 198
Y
Sbjct: 239 Y 239
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 33.9 bits (76), Expect = 0.082, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 29/142 (20%)
Query: 115 GVLCFVNTAQGAHRLARLL-----HHIDNVATKGAGTKMNIAEV---------------Y 154
GVL F +T +GA + A L +++N + A + N E+ +
Sbjct: 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHH 303
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI-------NYEAPDNIKKY 207
+ L QR + FRR I +VVA+ LA G+++ V++ Y + +Y
Sbjct: 304 AGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEY 363
Query: 208 IHRIGRTARGG--RQGTSVTLV 227
GR R G +G ++ +V
Sbjct: 364 KQMAGRAGRPGMDERGEAIIIV 385
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 23/136 (16%)
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTK--------MNIAEVYSDLKFDQRNKIIQE 168
+ FV+ + A L+ +L +D++ G+ K +A ++ L R+ I +
Sbjct: 276 MNFVSLDENA--LSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333
Query: 169 FRRRKIDLVVASDNLARGIDVENIDVVIN--YEAPDNIKKYIHRI---------GRTARG 217
FR+RKI ++VA+ LA G+++ V+I Y I Y I GR R
Sbjct: 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393
Query: 218 G--RQGTSVTLVTTHE 231
G + G S+ +V E
Sbjct: 394 GFDQIGESIVVVRDKE 409
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLA-RLLHHIDNVATKGAGTKMN------------ 149
++Y IRK +G L FVN + A R+A L + ++ TK +N
Sbjct: 229 LVYDAIRKK--KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286
Query: 150 ----------IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+A ++ L D+R + + FR+ I VVA+ L+ GI+ V+I
Sbjct: 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/71 (19%), Positives = 36/71 (50%)
Query: 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGR 213
+++L+ + + + +++ +I +VVA+ GID ++ VI++ +++ Y GR
Sbjct: 298 HANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGR 357
Query: 214 TARGGRQGTSV 224
R + +
Sbjct: 358 AGRDDMKADCI 368
>pdb|2HF2|A Chain A, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
pdb|2HF2|B Chain B, Domain Shifting Confirms Monomeric Structure Of
Escherichia Sugar Phosphatase Suph
Length = 283
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182
+ T GT +N A+ Y+ +F + QE ++R I VVAS+N
Sbjct: 8 IVTDXDGTFLNDAKTYNQPRFXAQ---YQELKKRGIKFVVASNN 48
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
IGKF PA ++ T + +LY+L K + L + +G LAR
Sbjct: 370 IGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELAR 422
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
IGKF PA ++ T + +LY+L K + L + +G LAR
Sbjct: 370 IGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELAR 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,662,744
Number of Sequences: 62578
Number of extensions: 260008
Number of successful extensions: 733
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 70
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)