Query psy9509
Match_columns 231
No_of_seqs 150 out of 1750
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 21:20:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 7.3E-42 1.6E-46 262.1 11.2 189 7-231 185-374 (400)
2 KOG0331|consensus 100.0 9.1E-42 2E-46 285.7 12.8 195 2-230 250-448 (519)
3 KOG0330|consensus 100.0 8.6E-41 1.9E-45 265.9 13.1 192 4-231 217-408 (476)
4 COG0513 SrmB Superfamily II DN 100.0 2.1E-40 4.5E-45 285.7 14.6 195 2-230 185-380 (513)
5 KOG0333|consensus 100.0 8.1E-40 1.7E-44 268.8 15.0 194 2-231 407-625 (673)
6 KOG0343|consensus 100.0 5.2E-39 1.1E-43 265.5 13.1 198 2-231 226-423 (758)
7 KOG0326|consensus 100.0 7.2E-38 1.6E-42 243.9 9.0 189 6-231 242-430 (459)
8 KOG0345|consensus 100.0 1.8E-37 3.8E-42 252.1 11.1 196 4-231 170-365 (567)
9 KOG0342|consensus 100.0 3.2E-37 7E-42 251.8 12.0 195 3-231 242-438 (543)
10 PRK11776 ATP-dependent RNA hel 100.0 1.2E-36 2.6E-41 261.1 15.7 191 4-231 160-350 (460)
11 PTZ00110 helicase; Provisional 100.0 7.4E-36 1.6E-40 259.6 16.3 193 4-231 290-485 (545)
12 KOG0336|consensus 100.0 1.3E-36 2.9E-41 243.8 10.7 195 2-231 378-573 (629)
13 PRK11634 ATP-dependent RNA hel 100.0 1.4E-35 2.9E-40 260.6 16.0 191 5-231 163-353 (629)
14 KOG0341|consensus 100.0 1E-36 2.2E-41 243.1 8.0 192 2-230 337-528 (610)
15 KOG0332|consensus 100.0 2E-35 4.4E-40 234.2 14.9 184 12-231 254-444 (477)
16 KOG0340|consensus 100.0 3.6E-35 7.9E-40 231.5 14.4 192 6-231 168-362 (442)
17 PRK04837 ATP-dependent RNA hel 100.0 1.2E-35 2.7E-40 252.4 12.4 190 6-231 172-363 (423)
18 PRK10590 ATP-dependent RNA hel 100.0 2.7E-35 5.9E-40 252.1 14.4 190 6-231 164-353 (456)
19 PRK04537 ATP-dependent RNA hel 100.0 4.4E-35 9.5E-40 255.8 14.1 189 6-230 174-364 (572)
20 PLN00206 DEAD-box ATP-dependen 100.0 1.4E-34 3.1E-39 250.7 15.6 191 5-231 284-476 (518)
21 PRK01297 ATP-dependent RNA hel 100.0 7.8E-34 1.7E-38 244.5 17.3 190 6-231 252-443 (475)
22 PRK11192 ATP-dependent RNA hel 100.0 5.2E-34 1.1E-38 243.3 15.8 191 5-231 161-353 (434)
23 KOG0335|consensus 100.0 4.3E-34 9.2E-39 236.2 14.5 193 2-229 237-443 (482)
24 KOG0338|consensus 100.0 4.5E-35 9.7E-40 240.3 8.3 193 3-231 339-534 (691)
25 KOG0348|consensus 100.0 6E-34 1.3E-38 234.8 10.5 225 5-231 301-555 (708)
26 PTZ00424 helicase 45; Provisio 100.0 1.4E-32 3E-37 232.5 14.3 185 11-231 190-375 (401)
27 KOG0346|consensus 100.0 5E-33 1.1E-37 224.8 10.1 193 4-231 183-411 (569)
28 KOG0327|consensus 100.0 9.1E-33 2E-37 220.1 10.6 188 6-231 184-371 (397)
29 PRK11057 ATP-dependent DNA hel 100.0 5.2E-31 1.1E-35 232.2 16.4 174 17-231 169-344 (607)
30 KOG0339|consensus 100.0 1.5E-31 3.2E-36 219.7 11.8 194 2-231 381-576 (731)
31 TIGR00614 recQ_fam ATP-depende 100.0 6.3E-31 1.4E-35 225.9 15.5 172 20-231 160-334 (470)
32 PLN03137 ATP-dependent DNA hel 100.0 6.1E-31 1.3E-35 236.6 14.6 185 6-231 600-788 (1195)
33 TIGR03817 DECH_helic helicase/ 100.0 8.9E-30 1.9E-34 227.8 15.8 198 15-228 187-384 (742)
34 TIGR01389 recQ ATP-dependent D 100.0 1.1E-29 2.5E-34 223.8 15.1 169 22-231 162-332 (591)
35 KOG0334|consensus 100.0 4.2E-30 9.1E-35 226.4 10.0 193 2-230 526-720 (997)
36 KOG0344|consensus 100.0 2.9E-29 6.4E-34 209.4 12.7 176 21-231 320-496 (593)
37 COG0514 RecQ Superfamily II DN 100.0 7.7E-29 1.7E-33 211.6 15.3 189 3-231 147-338 (590)
38 KOG0347|consensus 100.0 8.4E-31 1.8E-35 217.0 1.9 141 80-231 431-571 (731)
39 KOG4284|consensus 100.0 5E-29 1.1E-33 209.9 10.7 183 12-230 189-379 (980)
40 KOG0350|consensus 100.0 1.5E-28 3.3E-33 201.5 11.9 185 19-231 357-541 (620)
41 KOG0337|consensus 100.0 3.8E-29 8.2E-34 201.4 7.0 191 5-231 178-369 (529)
42 TIGR00580 mfd transcription-re 99.9 1.1E-26 2.3E-31 210.6 17.1 180 11-230 588-770 (926)
43 PRK10689 transcription-repair 99.9 4.4E-26 9.6E-31 210.5 17.6 178 13-229 739-918 (1147)
44 PHA02653 RNA helicase NPH-II; 99.9 2.1E-26 4.5E-31 202.5 14.2 169 21-230 320-514 (675)
45 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.4E-26 5.1E-31 203.9 14.3 182 5-228 183-389 (844)
46 PRK13767 ATP-dependent helicas 99.9 1.2E-25 2.7E-30 204.8 14.8 113 112-228 283-396 (876)
47 TIGR01970 DEAH_box_HrpB ATP-de 99.9 9.9E-26 2.1E-30 202.3 12.8 176 14-230 138-336 (819)
48 PRK09751 putative ATP-dependen 99.9 2.9E-25 6.2E-30 206.9 15.9 116 112-227 243-382 (1490)
49 PRK12898 secA preprotein trans 99.9 2.3E-25 5E-30 193.6 13.2 168 24-231 410-587 (656)
50 PRK10917 ATP-dependent DNA hel 99.9 1.1E-24 2.4E-29 194.2 16.8 109 112-228 470-587 (681)
51 PRK11664 ATP-dependent RNA hel 99.9 2E-25 4.3E-30 200.7 11.7 176 14-230 141-339 (812)
52 TIGR01587 cas3_core CRISPR-ass 99.9 1.9E-24 4.2E-29 180.2 16.3 120 98-228 206-334 (358)
53 TIGR00643 recG ATP-dependent D 99.9 9.4E-24 2E-28 187.0 18.8 118 102-227 435-563 (630)
54 KOG0351|consensus 99.9 9.6E-25 2.1E-29 196.1 12.2 190 3-231 401-593 (941)
55 PRK02362 ski2-like helicase; P 99.9 4.3E-24 9.4E-29 192.5 15.4 118 112-229 242-396 (737)
56 PRK11131 ATP-dependent RNA hel 99.9 1.9E-23 4.2E-28 192.0 13.4 185 4-230 200-411 (1294)
57 PRK00254 ski2-like helicase; P 99.9 4.7E-23 1E-27 185.4 14.8 119 112-230 237-388 (720)
58 COG1202 Superfamily II helicas 99.9 2.8E-23 6E-28 173.7 10.2 184 4-230 355-553 (830)
59 PRK04914 ATP-dependent helicas 99.9 2E-22 4.4E-27 182.5 15.1 123 97-228 477-601 (956)
60 cd00079 HELICc Helicase superf 99.9 3.7E-22 8E-27 142.8 13.5 118 99-226 12-131 (131)
61 PRK09200 preprotein translocas 99.9 8.5E-23 1.8E-27 181.1 12.0 128 92-231 405-542 (790)
62 COG1201 Lhr Lhr-like helicases 99.9 2.5E-22 5.3E-27 177.6 14.6 184 14-229 175-361 (814)
63 PRK01172 ski2-like helicase; P 99.9 1.9E-22 4.1E-27 180.6 13.3 117 112-229 235-377 (674)
64 TIGR01967 DEAH_box_HrpA ATP-de 99.9 3.6E-22 7.7E-27 184.2 11.9 170 19-230 208-404 (1283)
65 KOG0352|consensus 99.9 1.6E-22 3.4E-27 164.0 8.4 191 3-231 157-363 (641)
66 TIGR00603 rad25 DNA repair hel 99.9 9E-22 2E-26 173.2 13.6 194 22-230 401-607 (732)
67 TIGR03714 secA2 accessory Sec 99.9 8.6E-22 1.9E-26 173.4 12.3 128 91-231 400-538 (762)
68 KOG0329|consensus 99.9 3.5E-23 7.6E-28 157.6 3.0 152 9-230 204-355 (387)
69 COG1111 MPH1 ERCC4-like helica 99.9 4.4E-21 9.6E-26 158.6 14.4 131 98-230 347-481 (542)
70 PHA02558 uvsW UvsW helicase; P 99.9 2.5E-21 5.3E-26 167.6 13.2 122 96-227 325-449 (501)
71 KOG0349|consensus 99.9 3.7E-21 8E-26 156.4 11.4 199 21-228 399-613 (725)
72 TIGR00963 secA preprotein tran 99.9 5.1E-21 1.1E-25 167.8 13.1 127 93-231 383-518 (745)
73 TIGR03158 cas3_cyano CRISPR-as 99.9 8.6E-21 1.9E-25 157.7 12.5 87 112-215 271-357 (357)
74 PF00271 Helicase_C: Helicase 99.8 6.9E-21 1.5E-25 124.2 8.6 72 147-218 7-78 (78)
75 PRK12906 secA preprotein trans 99.8 7.9E-21 1.7E-25 167.9 11.3 128 92-231 417-554 (796)
76 COG1200 RecG RecG-like helicas 99.8 2.3E-20 4.9E-25 160.1 13.5 188 4-230 392-591 (677)
77 TIGR00631 uvrb excinuclease AB 99.8 3.3E-20 7.2E-25 163.7 14.9 122 98-230 425-553 (655)
78 PRK12900 secA preprotein trans 99.8 4.7E-20 1E-24 164.4 10.7 128 92-231 575-712 (1025)
79 PRK05298 excinuclease ABC subu 99.8 2.4E-19 5.3E-24 159.0 15.0 121 98-229 429-556 (652)
80 PRK13766 Hef nuclease; Provisi 99.8 3.5E-19 7.6E-24 162.1 15.6 122 97-229 345-478 (773)
81 PRK09401 reverse gyrase; Revie 99.8 9.8E-20 2.1E-24 169.1 11.7 148 22-216 268-430 (1176)
82 KOG0353|consensus 99.8 1E-19 2.3E-24 146.0 8.0 187 3-228 231-465 (695)
83 COG1197 Mfd Transcription-repa 99.8 1.7E-18 3.7E-23 156.2 15.8 185 6-230 726-913 (1139)
84 COG1204 Superfamily II helicas 99.8 1.5E-18 3.3E-23 154.9 14.6 182 21-228 179-406 (766)
85 PRK14701 reverse gyrase; Provi 99.8 7.4E-19 1.6E-23 166.8 12.4 160 19-223 265-449 (1638)
86 KOG0354|consensus 99.8 3.9E-18 8.4E-23 148.4 13.0 127 97-228 393-527 (746)
87 PRK09694 helicase Cas3; Provis 99.8 1.9E-17 4E-22 149.6 17.3 107 103-219 549-664 (878)
88 smart00490 HELICc helicase sup 99.8 7.8E-18 1.7E-22 110.4 8.9 81 128-218 2-82 (82)
89 KOG0947|consensus 99.7 5.9E-17 1.3E-21 142.4 16.0 128 101-228 555-721 (1248)
90 KOG0950|consensus 99.7 5.1E-18 1.1E-22 149.3 8.6 130 102-231 447-612 (1008)
91 COG1205 Distinct helicase fami 99.7 1.9E-17 4E-22 149.9 12.2 187 12-228 222-420 (851)
92 TIGR00595 priA primosomal prot 99.7 1.9E-16 4E-21 136.8 14.5 93 126-226 271-377 (505)
93 TIGR01054 rgy reverse gyrase. 99.7 1.1E-16 2.4E-21 149.1 14.0 102 84-202 300-409 (1171)
94 COG4098 comFA Superfamily II D 99.7 3.2E-16 7E-21 124.4 14.3 114 103-226 293-412 (441)
95 COG0556 UvrB Helicase subunit 99.7 9.1E-16 2E-20 128.1 15.7 122 96-228 427-555 (663)
96 COG1203 CRISPR-associated heli 99.7 3.7E-16 8E-21 140.6 13.1 104 112-228 439-548 (733)
97 PRK12904 preprotein translocas 99.7 4E-16 8.7E-21 138.8 12.8 128 92-231 407-574 (830)
98 KOG0948|consensus 99.7 3.9E-16 8.5E-21 134.5 11.0 130 100-229 370-538 (1041)
99 KOG0922|consensus 99.7 3.9E-16 8.5E-21 133.3 10.6 181 16-231 189-391 (674)
100 PRK05580 primosome assembly pr 99.7 2.1E-15 4.6E-20 134.6 15.8 95 125-227 438-546 (679)
101 PRK13104 secA preprotein trans 99.7 6.7E-16 1.5E-20 137.8 12.0 129 91-231 420-588 (896)
102 COG1061 SSL2 DNA or RNA helica 99.7 1.4E-15 3E-20 129.8 13.2 110 97-217 266-376 (442)
103 COG1643 HrpA HrpA-like helicas 99.7 4.9E-16 1.1E-20 138.9 10.5 178 14-230 187-387 (845)
104 PRK13107 preprotein translocas 99.6 1.4E-15 3.1E-20 135.5 11.1 128 92-231 426-592 (908)
105 KOG4150|consensus 99.6 3.4E-15 7.3E-20 125.7 12.3 177 21-228 450-638 (1034)
106 KOG0952|consensus 99.6 8.1E-15 1.7E-19 130.4 13.3 180 18-228 271-489 (1230)
107 PLN03142 Probable chromatin-re 99.6 6.1E-15 1.3E-19 134.9 12.9 120 97-226 469-593 (1033)
108 KOG0951|consensus 99.6 4.2E-14 9E-19 127.7 13.5 179 19-225 471-697 (1674)
109 KOG0920|consensus 99.5 1.5E-14 3.3E-19 129.4 8.4 215 4-229 301-543 (924)
110 KOG1123|consensus 99.5 4.3E-14 9.4E-19 117.4 8.4 183 21-218 447-635 (776)
111 COG4581 Superfamily II RNA hel 99.5 2.5E-13 5.3E-18 123.0 11.1 126 103-228 369-535 (1041)
112 KOG0924|consensus 99.5 1.6E-13 3.4E-18 117.7 7.7 177 19-229 497-696 (1042)
113 KOG0923|consensus 99.5 4.7E-13 1E-17 114.4 10.6 176 20-229 408-605 (902)
114 PRK11448 hsdR type I restricti 99.4 4E-12 8.7E-17 118.4 14.1 105 112-219 697-802 (1123)
115 PRK12903 secA preprotein trans 99.4 3.5E-12 7.7E-17 113.3 9.9 127 92-231 403-540 (925)
116 PRK12326 preprotein translocas 99.3 1.1E-11 2.4E-16 108.7 12.2 128 92-231 404-548 (764)
117 KOG0926|consensus 99.3 5.3E-12 1.1E-16 110.2 6.6 80 148-228 605-702 (1172)
118 KOG0385|consensus 99.3 2.4E-11 5.3E-16 105.6 10.6 121 96-226 468-593 (971)
119 KOG0953|consensus 99.3 5.2E-11 1.1E-15 100.4 11.2 115 103-228 347-475 (700)
120 PRK12901 secA preprotein trans 99.2 3.9E-11 8.5E-16 108.3 10.0 128 92-231 605-742 (1112)
121 KOG0384|consensus 99.2 3.6E-11 7.9E-16 109.0 8.8 123 96-228 680-809 (1373)
122 PRK12899 secA preprotein trans 99.2 9.2E-11 2E-15 105.5 10.5 127 93-231 546-682 (970)
123 PRK13103 secA preprotein trans 99.2 6.8E-11 1.5E-15 106.1 9.4 128 92-231 426-592 (913)
124 KOG0387|consensus 99.2 1.5E-10 3.4E-15 101.0 10.1 125 93-226 524-652 (923)
125 KOG0390|consensus 99.1 8.4E-10 1.8E-14 97.9 12.3 123 94-226 573-701 (776)
126 TIGR01407 dinG_rel DnaQ family 99.1 4.2E-09 9.1E-14 97.1 16.5 108 112-228 673-812 (850)
127 COG1198 PriA Primosomal protei 99.1 1.8E-09 3.8E-14 96.1 12.4 93 126-226 493-599 (730)
128 KOG0925|consensus 99.1 1.3E-09 2.8E-14 90.9 10.6 171 21-230 190-387 (699)
129 KOG0389|consensus 99.0 2.2E-09 4.9E-14 93.9 10.6 119 97-225 759-881 (941)
130 CHL00122 secA preprotein trans 99.0 5.6E-09 1.2E-13 93.6 11.9 87 92-190 401-491 (870)
131 KOG0392|consensus 98.9 1.3E-08 2.8E-13 92.9 12.1 121 96-224 1307-1446(1549)
132 KOG0391|consensus 98.9 1.6E-08 3.5E-13 91.9 11.3 123 96-228 1257-1385(1958)
133 KOG0388|consensus 98.9 8.3E-09 1.8E-13 89.7 8.7 121 95-225 1024-1147(1185)
134 PRK08074 bifunctional ATP-depe 98.9 8.3E-08 1.8E-12 89.2 15.2 109 112-228 751-891 (928)
135 KOG0949|consensus 98.8 5.9E-09 1.3E-13 93.2 6.5 78 149-226 964-1044(1330)
136 PRK07246 bifunctional ATP-depe 98.8 1.6E-07 3.4E-12 86.1 14.5 104 112-228 646-781 (820)
137 PRK12902 secA preprotein trans 98.8 8.7E-08 1.9E-12 86.2 11.4 87 92-190 416-506 (939)
138 COG1199 DinG Rad3-related DNA 98.8 3.6E-07 7.9E-12 82.4 15.3 112 103-228 470-615 (654)
139 COG0553 HepA Superfamily II DN 98.7 2.1E-07 4.5E-12 86.3 12.3 118 99-226 692-816 (866)
140 PRK11747 dinG ATP-dependent DN 98.7 1.1E-06 2.3E-11 79.5 16.0 104 112-228 533-672 (697)
141 COG1110 Reverse gyrase [DNA re 98.6 2.8E-07 6E-12 83.3 11.0 97 86-201 312-416 (1187)
142 PF13307 Helicase_C_2: Helicas 98.6 1.7E-07 3.7E-12 69.8 8.2 112 106-228 3-148 (167)
143 KOG1015|consensus 98.5 3.4E-07 7.3E-12 82.2 8.6 133 94-226 1121-1271(1567)
144 TIGR00604 rad3 DNA repair heli 98.4 4.9E-06 1.1E-10 75.6 13.6 114 112-229 521-673 (705)
145 KOG1000|consensus 98.4 1.4E-06 3.1E-11 73.3 9.0 121 97-227 470-598 (689)
146 PF06862 DUF1253: Protein of u 98.4 2.4E-05 5.2E-10 66.3 16.3 180 22-230 215-415 (442)
147 KOG0386|consensus 98.4 1E-06 2.2E-11 79.5 8.0 121 96-226 707-832 (1157)
148 COG0653 SecA Preprotein transl 98.3 8.6E-07 1.9E-11 79.5 5.8 126 92-229 406-544 (822)
149 TIGR00348 hsdR type I site-spe 98.3 9.7E-06 2.1E-10 73.1 12.3 99 113-217 514-634 (667)
150 COG4096 HsdR Type I site-speci 98.3 2.9E-06 6.3E-11 75.5 8.6 98 113-217 426-525 (875)
151 TIGR03117 cas_csf4 CRISPR-asso 98.3 5E-05 1.1E-09 67.5 16.4 113 103-228 461-614 (636)
152 KOG1002|consensus 98.3 3.9E-06 8.4E-11 70.8 8.7 123 96-228 617-747 (791)
153 KOG4439|consensus 98.2 1.8E-05 3.9E-10 69.4 10.6 125 92-226 722-852 (901)
154 COG4889 Predicted helicase [Ge 97.8 1.1E-05 2.5E-10 72.3 3.0 105 114-218 461-573 (1518)
155 TIGR02562 cas3_yersinia CRISPR 97.8 0.00011 2.4E-09 67.9 9.2 97 116-219 759-881 (1110)
156 smart00492 HELICc3 helicase su 97.7 0.00076 1.6E-08 48.7 10.2 72 157-228 31-136 (141)
157 smart00491 HELICc2 helicase su 97.7 0.0006 1.3E-08 49.3 9.2 69 161-229 32-138 (142)
158 TIGR00596 rad1 DNA repair prot 97.6 0.00047 1E-08 63.2 10.0 40 96-135 267-317 (814)
159 PF02399 Herpes_ori_bp: Origin 97.5 0.0028 6E-08 57.4 12.8 109 103-228 271-386 (824)
160 KOG1016|consensus 97.5 0.00037 8.1E-09 62.2 7.0 115 112-226 718-843 (1387)
161 PF13871 Helicase_C_4: Helicas 97.4 0.00068 1.5E-08 54.2 7.5 65 163-227 51-124 (278)
162 PRK14873 primosome assembly pr 97.1 0.0037 8E-08 56.4 9.7 94 97-199 170-265 (665)
163 PRK05580 primosome assembly pr 97.1 0.0066 1.4E-07 55.2 11.2 93 97-199 172-266 (679)
164 TIGR00595 priA primosomal prot 97.1 0.0058 1.3E-07 53.6 10.1 91 98-198 8-100 (505)
165 PRK10917 ATP-dependent DNA hel 97.0 0.0073 1.6E-07 55.0 10.2 80 112-197 309-389 (681)
166 PRK14873 primosome assembly pr 97.0 0.0044 9.6E-08 55.9 8.6 84 125-229 439-538 (665)
167 KOG0921|consensus 96.9 0.0013 2.8E-08 59.7 4.6 110 113-226 643-770 (1282)
168 COG1110 Reverse gyrase [DNA re 96.8 0.0074 1.6E-07 55.8 8.6 78 101-182 113-190 (1187)
169 COG1198 PriA Primosomal protei 96.6 0.0075 1.6E-07 54.6 7.5 80 94-182 224-305 (730)
170 TIGR00643 recG ATP-dependent D 96.6 0.016 3.4E-07 52.4 9.4 94 98-197 267-363 (630)
171 KOG1001|consensus 96.6 0.00047 1E-08 61.9 -0.5 119 97-225 520-643 (674)
172 TIGR00580 mfd transcription-re 96.4 0.027 5.8E-07 52.9 9.9 80 112-197 499-579 (926)
173 KOG0701|consensus 96.4 0.0026 5.6E-08 61.6 3.1 95 114-217 293-398 (1606)
174 PRK10689 transcription-repair 95.7 0.061 1.3E-06 51.7 8.7 80 112-197 648-728 (1147)
175 PRK14701 reverse gyrase; Provi 95.3 0.12 2.6E-06 51.4 9.5 67 112-182 121-187 (1638)
176 COG1200 RecG RecG-like helicas 95.2 0.19 4.1E-06 45.0 9.4 91 101-197 298-390 (677)
177 COG0513 SrmB Superfamily II DN 95.0 0.18 3.8E-06 44.5 9.0 73 116-197 102-180 (513)
178 TIGR01054 rgy reverse gyrase. 94.8 0.24 5.2E-06 48.0 9.7 65 112-182 120-187 (1171)
179 COG1197 Mfd Transcription-repa 94.7 0.29 6.2E-06 46.5 9.8 80 112-197 642-722 (1139)
180 PF10593 Z1: Z1 domain; Inter 94.7 0.085 1.8E-06 41.6 5.6 95 123-229 93-192 (239)
181 KOG0951|consensus 94.2 0.35 7.6E-06 46.3 9.1 113 112-229 1358-1493(1674)
182 KOG1513|consensus 94.1 0.055 1.2E-06 49.1 3.6 54 166-219 850-911 (1300)
183 PRK11634 ATP-dependent RNA hel 93.2 0.65 1.4E-05 42.1 8.9 77 112-197 73-155 (629)
184 KOG0347|consensus 92.9 0.31 6.8E-06 42.6 6.1 56 116-181 266-321 (731)
185 KOG2340|consensus 92.8 0.22 4.7E-06 43.4 4.9 107 114-230 553-668 (698)
186 TIGR00614 recQ_fam ATP-depende 92.7 0.54 1.2E-05 41.0 7.6 60 113-182 51-110 (470)
187 cd00268 DEADc DEAD-box helicas 92.4 1.4 3.1E-05 33.3 8.9 76 112-197 68-149 (203)
188 KOG0330|consensus 91.8 1.4 3.1E-05 37.1 8.3 82 103-194 119-207 (476)
189 TIGR01389 recQ ATP-dependent D 91.7 0.88 1.9E-05 41.0 7.9 60 113-182 53-112 (591)
190 PRK09401 reverse gyrase; Revie 91.5 1.3 2.8E-05 43.2 9.1 66 112-181 122-187 (1176)
191 KOG0331|consensus 90.6 1.5 3.3E-05 38.4 7.9 94 113-216 165-272 (519)
192 PF00270 DEAD: DEAD/DEAH box h 90.2 5.5 0.00012 28.9 9.8 76 112-197 43-125 (169)
193 PRK11192 ATP-dependent RNA hel 90.2 1.7 3.8E-05 37.4 8.0 75 113-197 73-153 (434)
194 TIGR00696 wecB_tagA_cpsF bacte 90.1 4.5 9.8E-05 30.3 9.2 70 101-178 34-105 (177)
195 PRK11776 ATP-dependent RNA hel 90.0 2 4.4E-05 37.3 8.3 75 114-197 73-153 (460)
196 PRK10590 ATP-dependent RNA hel 89.8 2.3 4.9E-05 37.0 8.4 74 114-197 76-155 (456)
197 PRK04537 ATP-dependent RNA hel 89.2 1.5 3.3E-05 39.3 7.1 74 114-197 85-165 (572)
198 PRK04837 ATP-dependent RNA hel 88.7 2.7 5.8E-05 36.1 8.0 75 113-197 83-163 (423)
199 PF03808 Glyco_tran_WecB: Glyc 88.5 6.6 0.00014 29.2 9.1 70 102-179 35-107 (172)
200 KOG0339|consensus 88.4 2.7 5.8E-05 36.8 7.5 74 113-196 296-375 (731)
201 cd06533 Glyco_transf_WecG_TagA 87.8 7.3 0.00016 28.9 8.9 70 102-179 33-105 (171)
202 PRK11057 ATP-dependent DNA hel 87.6 2.8 6E-05 38.0 7.7 59 113-181 65-123 (607)
203 PLN03137 ATP-dependent DNA hel 87.3 4.8 0.0001 39.0 9.1 60 113-182 500-561 (1195)
204 TIGR00631 uvrb excinuclease AB 86.9 9.7 0.00021 34.9 10.7 113 92-213 34-175 (655)
205 PTZ00110 helicase; Provisional 86.6 3.6 7.8E-05 36.7 7.8 75 113-197 203-283 (545)
206 PRK12898 secA preprotein trans 86.5 9.8 0.00021 34.7 10.4 71 110-193 141-211 (656)
207 KOG0348|consensus 86.1 2.2 4.8E-05 37.5 5.8 60 113-181 211-270 (708)
208 KOG0343|consensus 86.0 1.8 4E-05 38.1 5.3 59 112-181 140-198 (758)
209 PRK01297 ATP-dependent RNA hel 85.1 7.2 0.00016 34.1 8.8 76 113-197 162-243 (475)
210 TIGR00963 secA preprotein tran 83.1 9.5 0.00021 35.3 8.8 63 108-182 92-154 (745)
211 PRK05298 excinuclease ABC subu 82.7 22 0.00048 32.6 11.1 114 92-214 37-179 (652)
212 KOG0298|consensus 82.2 3 6.5E-05 40.3 5.4 58 163-222 1258-1316(1394)
213 KOG0329|consensus 81.4 3.7 7.9E-05 32.7 4.9 73 115-196 112-190 (387)
214 KOG0338|consensus 81.0 14 0.00031 32.6 8.5 79 112-200 251-336 (691)
215 cd00046 DEXDc DEAD-like helica 80.9 15 0.00033 25.0 8.2 66 112-188 29-95 (144)
216 KOG0335|consensus 80.7 6.8 0.00015 34.1 6.6 73 114-196 153-231 (482)
217 COG1922 WecG Teichoic acid bio 80.6 23 0.00051 28.2 9.2 71 101-179 94-167 (253)
218 KOG1133|consensus 80.6 47 0.001 30.6 12.8 110 113-228 629-778 (821)
219 TIGR03817 DECH_helic helicase/ 80.5 10 0.00022 35.3 8.2 58 112-181 80-137 (742)
220 KOG0383|consensus 80.4 1.1 2.3E-05 40.8 1.9 79 97-186 613-696 (696)
221 KOG1132|consensus 79.8 56 0.0012 30.9 12.4 86 113-202 561-656 (945)
222 cd01524 RHOD_Pyr_redox Member 79.4 3.6 7.8E-05 26.7 3.8 37 112-158 50-86 (90)
223 PRK09751 putative ATP-dependen 78.3 12 0.00027 37.5 8.4 81 113-197 37-130 (1490)
224 PRK13104 secA preprotein trans 78.3 17 0.00038 34.4 8.9 62 109-182 119-180 (896)
225 KOG0342|consensus 77.1 15 0.00032 32.1 7.5 61 112-181 153-213 (543)
226 PRK15483 type III restriction- 77.0 2.6 5.7E-05 39.9 3.4 46 173-218 501-546 (986)
227 COG0514 RecQ Superfamily II DN 76.5 8.2 0.00018 34.7 6.1 60 113-182 57-116 (590)
228 PRK13766 Hef nuclease; Provisi 76.3 18 0.00039 33.8 8.7 76 112-198 57-138 (773)
229 COG4098 comFA Superfamily II D 76.1 12 0.00026 31.3 6.5 114 94-228 123-242 (441)
230 smart00450 RHOD Rhodanese Homo 75.8 6.9 0.00015 25.2 4.5 37 112-158 55-92 (100)
231 cd01523 RHOD_Lact_B Member of 75.3 4.5 9.7E-05 26.8 3.4 37 112-158 60-96 (100)
232 COG1111 MPH1 ERCC4-like helica 74.3 25 0.00053 31.0 8.2 81 107-199 53-139 (542)
233 PLN00206 DEAD-box ATP-dependen 73.0 20 0.00044 31.8 7.8 75 113-197 196-276 (518)
234 KOG0340|consensus 72.4 15 0.00033 30.8 6.2 60 112-181 74-133 (442)
235 KOG0389|consensus 72.2 33 0.00071 32.0 8.7 72 103-185 437-511 (941)
236 PRK09200 preprotein translocas 71.0 24 0.00053 33.1 8.0 62 108-181 114-176 (790)
237 KOG0346|consensus 70.0 11 0.00025 32.5 5.1 68 113-188 93-165 (569)
238 KOG0350|consensus 69.9 16 0.00034 32.1 6.0 78 114-197 216-301 (620)
239 KOG0334|consensus 69.5 20 0.00044 34.1 7.1 60 112-181 437-496 (997)
240 COG3587 Restriction endonuclea 69.5 4.7 0.0001 37.5 3.0 47 172-218 482-528 (985)
241 PF01751 Toprim: Toprim domain 69.0 11 0.00025 25.0 4.3 64 116-189 1-76 (100)
242 cd01529 4RHOD_Repeats Member o 68.0 12 0.00027 24.4 4.2 37 112-158 55-92 (96)
243 PRK05728 DNA polymerase III su 67.0 18 0.00038 26.0 5.1 40 96-135 10-51 (142)
244 PRK12899 secA preprotein trans 66.8 36 0.00077 32.6 8.1 73 98-182 118-192 (970)
245 cd01518 RHOD_YceA Member of th 66.1 15 0.00033 24.2 4.4 38 111-158 59-97 (101)
246 PRK12904 preprotein translocas 65.8 40 0.00087 31.8 8.2 63 108-182 117-179 (830)
247 cd01526 RHOD_ThiF Member of th 64.8 7.6 0.00016 26.9 2.8 37 112-158 71-109 (122)
248 PRK13767 ATP-dependent helicas 64.6 37 0.0008 32.4 8.0 64 114-181 85-154 (876)
249 PRK06646 DNA polymerase III su 64.4 23 0.0005 25.9 5.3 43 93-135 7-51 (154)
250 cd01534 4RHOD_Repeat_3 Member 64.2 11 0.00024 24.5 3.5 36 113-158 56-91 (95)
251 cd01521 RHOD_PspE2 Member of t 63.1 14 0.0003 24.9 3.8 37 112-158 63-101 (110)
252 KOG0345|consensus 62.5 52 0.0011 28.9 7.6 75 115-197 81-163 (567)
253 PRK03692 putative UDP-N-acetyl 61.9 79 0.0017 25.1 9.1 70 101-179 91-163 (243)
254 PF04364 DNA_pol3_chi: DNA pol 61.4 23 0.00049 25.3 4.8 35 101-135 15-51 (137)
255 cd01449 TST_Repeat_2 Thiosulfa 61.2 23 0.00049 24.0 4.7 46 102-157 64-113 (118)
256 PRK13103 secA preprotein trans 61.1 59 0.0013 31.0 8.4 67 104-182 114-180 (913)
257 cd01527 RHOD_YgaP Member of th 60.4 17 0.00037 23.8 3.8 37 112-158 53-90 (99)
258 smart00487 DEXDc DEAD-like hel 59.8 5.4 0.00012 29.3 1.4 39 14-52 152-190 (201)
259 COG1205 Distinct helicase fami 59.6 46 0.001 31.7 7.6 62 112-181 114-175 (851)
260 cd01528 RHOD_2 Member of the R 58.8 18 0.00039 23.9 3.7 37 112-158 57-94 (101)
261 cd01533 4RHOD_Repeat_2 Member 58.2 24 0.00053 23.6 4.4 37 112-158 65-103 (109)
262 PTZ00424 helicase 45; Provisio 57.9 63 0.0014 27.3 7.8 76 112-197 95-176 (401)
263 cd01525 RHOD_Kc Member of the 57.8 24 0.00051 23.3 4.2 36 113-158 65-101 (105)
264 cd00158 RHOD Rhodanese Homolog 57.5 26 0.00056 21.9 4.3 38 112-158 49-86 (89)
265 PRK05320 rhodanese superfamily 57.0 25 0.00054 28.1 4.8 38 112-159 174-212 (257)
266 cd01447 Polysulfide_ST Polysul 56.9 13 0.00029 24.4 2.9 37 112-158 60-97 (103)
267 PRK02362 ski2-like helicase; P 56.8 36 0.00077 31.8 6.4 86 98-197 50-143 (737)
268 KOG0352|consensus 56.8 33 0.00071 29.7 5.5 60 113-182 61-122 (641)
269 cd01532 4RHOD_Repeat_1 Member 56.5 22 0.00048 23.0 3.8 36 113-158 50-88 (92)
270 cd01520 RHOD_YbbB Member of th 56.5 19 0.00041 25.1 3.7 37 112-158 85-122 (128)
271 smart00487 DEXDc DEAD-like hel 56.5 74 0.0016 23.0 8.3 59 113-180 54-112 (201)
272 cd01444 GlpE_ST GlpE sulfurtra 56.0 19 0.00042 23.2 3.5 36 112-157 55-91 (96)
273 cd01448 TST_Repeat_1 Thiosulfa 55.3 23 0.0005 24.2 3.9 37 112-158 78-116 (122)
274 PRK00254 ski2-like helicase; P 55.2 48 0.0011 30.8 7.0 72 112-197 67-144 (720)
275 cd01519 RHOD_HSP67B2 Member of 54.7 16 0.00035 24.1 3.0 37 112-158 65-102 (106)
276 smart00493 TOPRIM topoisomeras 52.6 52 0.0011 20.1 6.5 59 116-186 2-60 (76)
277 PRK10287 thiosulfate:cyanide s 51.7 46 0.001 22.4 4.8 36 113-158 60-95 (104)
278 cd01535 4RHOD_Repeat_4 Member 51.4 54 0.0012 23.6 5.4 45 104-158 39-85 (145)
279 cd05212 NAD_bind_m-THF_DH_Cycl 51.3 89 0.0019 22.4 7.3 85 100-202 11-103 (140)
280 TIGR02621 cas3_GSU0051 CRISPR- 49.9 45 0.00097 31.6 5.8 63 114-180 62-142 (844)
281 COG2927 HolC DNA polymerase II 47.6 70 0.0015 23.1 5.3 39 98-136 11-52 (144)
282 KOG0337|consensus 47.4 74 0.0016 27.6 6.2 73 113-197 90-170 (529)
283 COG0353 RecR Recombinational D 47.2 1E+02 0.0022 23.6 6.3 62 114-186 79-149 (198)
284 KOG0341|consensus 47.0 37 0.00079 29.0 4.3 66 112-181 245-310 (610)
285 TIGR02981 phageshock_pspE phag 46.1 70 0.0015 21.4 5.0 25 112-136 57-81 (101)
286 KOG0351|consensus 45.1 57 0.0012 31.4 5.8 56 116-181 307-364 (941)
287 COG1204 Superfamily II helicas 45.0 89 0.0019 29.4 7.0 70 98-181 58-130 (766)
288 cd01522 RHOD_1 Member of the R 43.1 36 0.00079 23.2 3.4 37 112-158 63-100 (117)
289 cd00032 CASc Caspase, interleu 42.3 1.7E+02 0.0036 23.0 9.7 74 123-212 31-108 (243)
290 PRK01415 hypothetical protein; 42.1 50 0.0011 26.3 4.3 39 112-160 170-209 (247)
291 PF10657 RC-P840_PscD: Photosy 42.0 47 0.001 23.1 3.6 40 162-201 63-108 (144)
292 PRK01172 ski2-like helicase; P 41.9 1.4E+02 0.003 27.6 7.8 56 112-181 64-119 (674)
293 COG0300 DltE Short-chain dehyd 41.5 1.7E+02 0.0037 23.6 7.2 66 112-188 29-97 (265)
294 TIGR03714 secA2 accessory Sec 41.4 1.4E+02 0.003 28.1 7.5 63 108-182 106-173 (762)
295 PLN02160 thiosulfate sulfurtra 41.1 40 0.00087 23.9 3.4 37 112-158 80-117 (136)
296 COG0610 Type I site-specific r 40.6 43 0.00093 32.4 4.3 55 162-217 580-636 (962)
297 PRK00162 glpE thiosulfate sulf 39.0 1.1E+02 0.0023 20.3 5.2 37 112-158 57-94 (108)
298 TIGR00096 probable S-adenosylm 38.9 95 0.002 25.2 5.5 65 116-192 27-91 (276)
299 PRK08187 pyruvate kinase; Vali 38.4 1.3E+02 0.0029 26.6 6.7 29 160-188 405-433 (493)
300 cd01445 TST_Repeats Thiosulfat 37.6 1.1E+02 0.0023 21.8 5.1 46 103-158 82-134 (138)
301 COG1168 MalY Bifunctional PLP- 37.3 85 0.0018 26.7 5.0 110 100-220 146-268 (388)
302 PF02602 HEM4: Uroporphyrinoge 36.3 1.5E+02 0.0034 22.6 6.4 73 98-182 101-177 (231)
303 PRK09189 uroporphyrinogen-III 36.2 2E+02 0.0042 22.4 6.9 74 97-181 100-178 (240)
304 PHA03371 circ protein; Provisi 36.2 37 0.00081 26.4 2.6 46 183-228 30-89 (240)
305 PRK11493 sseA 3-mercaptopyruva 35.9 78 0.0017 25.5 4.7 47 102-158 217-267 (281)
306 smart00115 CASc Caspase, inter 35.1 2.2E+02 0.0048 22.3 10.5 83 113-211 8-106 (241)
307 PF13245 AAA_19: Part of AAA d 34.3 1.1E+02 0.0024 19.2 4.3 39 95-133 18-62 (76)
308 TIGR02562 cas3_yersinia CRISPR 34.3 19 0.00041 34.7 1.0 17 22-38 624-640 (1110)
309 PRK06827 phosphoribosylpyropho 33.9 1.8E+02 0.0039 24.9 6.6 65 112-184 263-330 (382)
310 PF04273 DUF442: Putative phos 33.8 1.1E+02 0.0023 21.0 4.4 34 100-134 74-107 (110)
311 PF11496 HDA2-3: Class II hist 33.7 2.7E+02 0.0058 22.9 7.8 112 96-217 93-232 (297)
312 COG2519 GCD14 tRNA(1-methylade 33.6 1.4E+02 0.0031 23.9 5.5 48 87-136 163-211 (256)
313 PRK06739 pyruvate kinase; Vali 33.5 3E+02 0.0064 23.3 8.8 31 160-190 251-281 (352)
314 PF14617 CMS1: U3-containing 9 33.2 1.2E+02 0.0025 24.3 5.1 90 114-213 127-235 (252)
315 PF07652 Flavi_DEAD: Flaviviru 33.2 1.2E+02 0.0026 22.1 4.7 34 103-136 21-56 (148)
316 cd03031 GRX_GRX_like Glutaredo 33.2 1.9E+02 0.0041 20.9 7.0 45 115-169 1-52 (147)
317 PLN02723 3-mercaptopyruvate su 33.1 1E+02 0.0022 25.5 5.0 47 102-158 255-305 (320)
318 PHA02653 RNA helicase NPH-II; 33.1 1.6E+02 0.0034 27.4 6.5 76 113-197 222-297 (675)
319 TIGR03865 PQQ_CXXCW PQQ-depend 33.0 81 0.0018 23.1 4.0 37 112-158 115-153 (162)
320 PRK00142 putative rhodanese-re 32.9 73 0.0016 26.3 4.1 39 112-160 170-209 (314)
321 PHA02558 uvsW UvsW helicase; P 32.2 2.1E+02 0.0045 25.4 7.1 40 97-136 139-181 (501)
322 PRK15327 type III secretion sy 31.1 3.4E+02 0.0075 23.3 8.6 65 97-172 168-241 (393)
323 PF08704 GCD14: tRNA methyltra 30.4 84 0.0018 25.0 3.9 50 86-136 112-162 (247)
324 KOG0385|consensus 30.3 4.2E+02 0.0092 25.2 8.5 59 112-181 216-275 (971)
325 PF00581 Rhodanese: Rhodanese- 30.1 77 0.0017 20.8 3.3 37 112-158 66-108 (113)
326 cd05796 Ribosomal_P0_like Ribo 29.5 2.3E+02 0.005 20.8 6.2 34 184-217 105-142 (163)
327 cd03418 GRX_GRXb_1_3_like Glut 29.3 1.3E+02 0.0029 18.0 7.0 53 116-178 2-56 (75)
328 PF12683 DUF3798: Protein of u 29.0 87 0.0019 25.3 3.7 78 112-205 61-144 (275)
329 COG0607 PspE Rhodanese-related 28.7 62 0.0013 21.3 2.6 25 112-136 60-84 (110)
330 PF09419 PGP_phosphatase: Mito 28.3 2.5E+02 0.0055 20.9 7.9 47 112-172 76-130 (168)
331 COG0074 SucD Succinyl-CoA synt 28.2 3.3E+02 0.0072 22.3 8.5 63 101-173 54-116 (293)
332 PRK09860 putative alcohol dehy 27.8 3.8E+02 0.0082 22.8 9.1 71 99-179 17-94 (383)
333 PF02142 MGS: MGS-like domain 27.7 56 0.0012 21.4 2.2 21 161-181 48-68 (95)
334 KOG0701|consensus 27.2 19 0.00041 36.3 -0.2 56 160-215 708-763 (1606)
335 TIGR02744 TrbI_Ftype type-F co 27.1 2.2E+02 0.0047 19.7 7.8 59 113-190 30-100 (112)
336 cd01530 Cdc25 Cdc25 phosphatas 26.7 98 0.0021 21.3 3.4 47 112-158 67-117 (121)
337 PRK09206 pyruvate kinase; Prov 26.7 4.5E+02 0.0098 23.3 8.0 94 94-190 193-288 (470)
338 KOG0333|consensus 26.4 1.7E+02 0.0036 26.4 5.2 60 112-182 321-381 (673)
339 cd03028 GRX_PICOT_like Glutare 26.0 1.9E+02 0.0041 18.6 6.8 25 112-136 6-36 (90)
340 TIGR00365 monothiol glutaredox 25.4 2E+02 0.0044 18.8 7.6 25 112-136 10-40 (97)
341 PF02863 Arg_repressor_C: Argi 25.3 94 0.002 19.2 2.7 23 113-135 47-69 (70)
342 cd03027 GRX_DEP Glutaredoxin ( 25.2 1.7E+02 0.0036 17.7 6.7 55 115-179 2-57 (73)
343 PTZ00066 pyruvate kinase; Prov 24.5 5.2E+02 0.011 23.2 8.3 31 160-190 295-325 (513)
344 PF03875 Statherin: Statherin; 24.2 61 0.0013 17.3 1.4 17 202-218 2-20 (42)
345 TIGR00282 metallophosphoestera 23.4 2.7E+02 0.006 22.4 5.7 34 147-182 145-178 (266)
346 PRK00553 ribose-phosphate pyro 23.1 3.5E+02 0.0077 22.6 6.5 66 112-184 217-285 (332)
347 TIGR01866 cas_Csn2 CRISPR-asso 23.0 2.5E+02 0.0054 21.9 5.2 39 98-136 147-190 (216)
348 PF01488 Shikimate_DH: Shikima 22.8 2.8E+02 0.006 19.4 7.5 88 98-206 21-116 (135)
349 TIGR03167 tRNA_sel_U_synt tRNA 22.7 2.5E+02 0.0055 23.2 5.5 35 114-158 75-110 (311)
350 PRK12326 preprotein translocas 22.6 4E+02 0.0087 25.1 7.1 58 104-167 110-167 (764)
351 PRK13107 preprotein translocas 22.6 6.7E+02 0.015 24.4 8.6 65 106-182 116-180 (908)
352 PRK05597 molybdopterin biosynt 22.6 1.3E+02 0.0028 25.3 3.9 37 112-158 313-350 (355)
353 PF01113 DapB_N: Dihydrodipico 22.3 2.7E+02 0.0059 19.2 6.9 55 115-181 69-123 (124)
354 KOG1131|consensus 22.2 6E+02 0.013 23.1 10.1 86 113-202 530-623 (755)
355 PRK11784 tRNA 2-selenouridine 22.1 3.9E+02 0.0084 22.5 6.6 48 112-170 87-135 (345)
356 cd01080 NAD_bind_m-THF_DH_Cycl 22.0 3.3E+02 0.0072 20.1 6.9 87 101-205 28-122 (168)
357 smart00851 MGS MGS-like domain 21.9 1.3E+02 0.0028 19.3 3.0 20 163-182 45-64 (90)
358 COG2247 LytB Putative cell wal 21.7 4.8E+02 0.01 21.8 7.2 29 108-136 71-99 (337)
359 PRK01221 putative deoxyhypusin 21.4 2.7E+02 0.0058 23.1 5.3 36 147-182 55-91 (312)
360 PRK14725 pyruvate kinase; Prov 21.4 6.5E+02 0.014 23.2 8.9 89 95-189 453-551 (608)
361 TIGR00381 cdhD CO dehydrogenas 21.0 5.4E+02 0.012 22.1 9.2 39 98-136 200-239 (389)
362 PF01094 ANF_receptor: Recepto 20.9 4.4E+02 0.0096 21.1 9.3 37 100-136 108-148 (348)
363 PLN02762 pyruvate kinase compl 20.6 6.2E+02 0.014 22.7 8.8 30 160-189 290-319 (509)
364 PF04210 MtrG: Tetrahydrometha 20.3 54 0.0012 20.3 0.9 15 203-217 31-46 (70)
No 1
>KOG0328|consensus
Probab=100.00 E-value=7.3e-42 Score=262.14 Aligned_cols=189 Identities=27% Similarity=0.448 Sum_probs=175.0
Q ss_pred cceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcc
Q psy9509 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86 (231)
Q Consensus 7 ~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231)
+|...+.++++++|+..|++++|||+|.++.+...++|.+|..+.+... ..+.+
T Consensus 185 gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd--------------------------eltlE 238 (400)
T KOG0328|consen 185 GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD--------------------------ELTLE 238 (400)
T ss_pred hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC--------------------------CCchh
Confidence 6777889999999999999999999999999999999999999887622 23456
Q ss_pred cccceeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 87 ELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 87 ~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
.++++|+.++.++ |.+.|..+.....-.+++|||||+..++.+.+.+++. ++.+...||+|++++|+++
T Consensus 239 gIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~----------nftVssmHGDm~qkERd~i 308 (400)
T KOG0328|consen 239 GIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----------NFTVSSMHGDMEQKERDKI 308 (400)
T ss_pred hhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh----------CceeeeccCCcchhHHHHH
Confidence 7999999887655 9999999999988889999999999999999999987 8899999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.+|++|+.+||++|++.+||+|+|.|++|||||.|...+.|+||+||.||.|++|.++.|+..+|
T Consensus 309 m~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d 374 (400)
T KOG0328|consen 309 MNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 374 (400)
T ss_pred HHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999997654
No 2
>KOG0331|consensus
Probab=100.00 E-value=9.1e-42 Score=285.69 Aligned_cols=195 Identities=28% Similarity=0.435 Sum_probs=178.9
Q ss_pred cccCCcceeeeeccccCC-CCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccc
Q psy9509 2 RRRGVGGLVIMWDTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~-~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
||++|||...+.+|+..+ ++++|++++|||+|.++..++..+|++|..+.+... .
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~------------------------~ 305 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK------------------------K 305 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecch------------------------h
Confidence 678999999999999999 666799999999999999999999999988777521 1
Q ss_pred cccCcccccceeeecCCCChHHHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC
Q psy9509 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL 157 (231)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 157 (231)
+.....++.|....|+...|...|..+|... .+.++||||+|+..|++++..|+.. ++.+..+||+.
T Consensus 306 ~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----------~~~a~~iHGd~ 375 (519)
T KOG0331|consen 306 ELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----------GWPAVAIHGDK 375 (519)
T ss_pred hhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----------Ccceeeecccc
Confidence 2355678899999999999999999999776 4679999999999999999999986 78999999999
Q ss_pred CHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 158 KFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 158 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
++.+|..+++.|++|+..|||||++++||+|+|+|++|||||+|.+.++|+||+||+||.|..|.+++|++..
T Consensus 376 sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~ 448 (519)
T KOG0331|consen 376 SQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSD 448 (519)
T ss_pred cHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>KOG0330|consensus
Probab=100.00 E-value=8.6e-41 Score=265.90 Aligned_cols=192 Identities=30% Similarity=0.434 Sum_probs=182.4
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
++|.|...+-.|+..+|.++|++|||||+|..+.++....+++|..+.+. +++.
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s--------------------------~ky~ 270 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVS--------------------------SKYQ 270 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEecc--------------------------chhc
Confidence 46788888888999999999999999999999999999999999988875 5678
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
+-+.++|.|..++...|..+|..+|....+.++||||+++..+..++-.|+.. ++.+..+||.|++..|.
T Consensus 271 tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l----------g~~a~~LhGqmsq~~Rl 340 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL----------GFQAIPLHGQMSQSKRL 340 (476)
T ss_pred chHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc----------CcceecccchhhHHHHH
Confidence 88999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
..+++|+.|..+||+|||+++||+|+|.|++|||||.|.+..+|+||+||+||.|.+|.++.+++..|
T Consensus 341 g~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyD 408 (476)
T KOG0330|consen 341 GALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYD 408 (476)
T ss_pred HHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998643
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-40 Score=285.74 Aligned_cols=195 Identities=29% Similarity=0.455 Sum_probs=180.9
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
|+++|||...+..|+..+|.++|+++||||+|+.+..+++.++++|..+.+.... .
T Consensus 185 rmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~------------------------~ 240 (513)
T COG0513 185 RMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEK------------------------L 240 (513)
T ss_pred hhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEcccc------------------------c
Confidence 5678899999999999999999999999999999999999999999977765211 1
Q ss_pred ccCcccccceeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 82 FTTPAELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
..+...+.|.+..++... |...|..++......++||||+|+..++.++..|... ++.+..+||++++.
T Consensus 241 ~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----------g~~~~~lhG~l~q~ 310 (513)
T COG0513 241 ERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----------GFKVAALHGDLPQE 310 (513)
T ss_pred cccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----------CCeEEEecCCCCHH
Confidence 236788999999999876 9999999999888889999999999999999999988 89999999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+|.+++++|++|+.+||||||+++||||+|++++|||||.|.+.+.|+||+||+||.|..|.++.|++++
T Consensus 311 ~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 311 ERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred HHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999874
No 5
>KOG0333|consensus
Probab=100.00 E-value=8.1e-40 Score=268.82 Aligned_cols=194 Identities=29% Similarity=0.465 Sum_probs=179.6
Q ss_pred cccCCcceeeeeccccCCCCC-------------------------CcEEEEeeecCCChhhhhcccccCCeEEeeeccC
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSR-------------------------PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEP 56 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-------------------------~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~ 56 (231)
||.+|||.-...+++.++|+. +|+++||||+|+.++.+++.+|.+|+++++....
T Consensus 407 rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~g 486 (673)
T KOG0333|consen 407 RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAG 486 (673)
T ss_pred hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCC
Confidence 577899999999998888732 6999999999999999999999999998876322
Q ss_pred CCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 57 AGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
...+.++|.+..+...+|...|.++|......++|||+|+++.|+.+++.|.+.
T Consensus 487 --------------------------k~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~ 540 (673)
T KOG0333|consen 487 --------------------------KPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKA 540 (673)
T ss_pred --------------------------CCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc
Confidence 234678899999999999999999999887789999999999999999999998
Q ss_pred ccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhccccc
Q psy9509 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTAR 216 (231)
Q Consensus 137 ~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR 216 (231)
++.+..+||+.++++|+.+++.|+.|..+|||||++++||||+|+|.+|||||.+.+...|+||+||+||
T Consensus 541 ----------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgR 610 (673)
T KOG0333|consen 541 ----------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGR 610 (673)
T ss_pred ----------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEeecCC
Q psy9509 217 GGRQGTSVTLVTTHE 231 (231)
Q Consensus 217 ~g~~g~~~~~~~~~~ 231 (231)
.|+.|.++.|+++.|
T Consensus 611 AGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 611 AGKSGTAISFLTPAD 625 (673)
T ss_pred cccCceeEEEeccch
Confidence 999999999999875
No 6
>KOG0343|consensus
Probab=100.00 E-value=5.2e-39 Score=265.54 Aligned_cols=198 Identities=25% Similarity=0.403 Sum_probs=187.0
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
|+.+|||...+-.|+..+|..+|++|||||-...+.++++..+.+|..|.+.... .
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a------------------------~ 281 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA------------------------V 281 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc------------------------c
Confidence 5678999999999999999999999999999999999999999999999987322 3
Q ss_pred ccCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHH
Q psy9509 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 161 (231)
..+|.++.|+|+.++.+.|+.+|...++.+...++|||+.|++++..+++.+++.-+ ++.+..+||.|++..
T Consensus 282 ~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrp--------g~~l~~L~G~~~Q~~ 353 (758)
T KOG0343|consen 282 AATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRP--------GIPLLALHGTMSQKK 353 (758)
T ss_pred ccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCC--------CCceeeeccchhHHH
Confidence 468999999999999999999999999999889999999999999999999998855 899999999999999
Q ss_pred HHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 162 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|..++.+|-..+.-||+||++++||+|+|.|+.||++|+|.++++|+||+||++|.+..|.++++++|.|
T Consensus 354 R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 354 RIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999864
No 7
>KOG0326|consensus
Probab=100.00 E-value=7.2e-38 Score=243.91 Aligned_cols=189 Identities=25% Similarity=0.390 Sum_probs=175.8
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
..|...+-+++..+|.++|++++|||+|-.+..+.+..|++|+.|... +.-++
T Consensus 242 ~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM---------------------------~eLtl 294 (459)
T KOG0326|consen 242 VDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM---------------------------EELTL 294 (459)
T ss_pred hhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh---------------------------hhhhh
Confidence 344555667888999999999999999999999999999999998875 22456
Q ss_pred ccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
..+.++|-++.+..|+-+|..++.+..-.++||||||...+|.+|..+.+. |+.+.++|+.|-++.|.++
T Consensus 295 ~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITel----------GyscyyiHakM~Q~hRNrV 364 (459)
T KOG0326|consen 295 KGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL----------GYSCYYIHAKMAQEHRNRV 364 (459)
T ss_pred cchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc----------cchhhHHHHHHHHhhhhhh
Confidence 778999999999999999999999998889999999999999999999998 9999999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+..|+.|..+.||||+.+-||||++.+++|||||+|.+.++|+||+||+||.|.-|.++.+++-+|
T Consensus 365 FHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 365 FHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred hhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 999999999999999999999999999999999999999999999999999999999999998664
No 8
>KOG0345|consensus
Probab=100.00 E-value=1.8e-37 Score=252.15 Aligned_cols=196 Identities=24% Similarity=0.431 Sum_probs=183.0
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
.||||...+..|+..+|..+.+-|||||...++.++...+++||+.+.+.... ...
T Consensus 170 ldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~------------------------~~~ 225 (567)
T KOG0345|consen 170 LDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKS------------------------KSA 225 (567)
T ss_pred hcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccc------------------------ccc
Confidence 58999999999999999999999999999999999999999999998876221 223
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
+|+.+..+|..|+...|...|+++|.....+++|||++|+..++..+..+...++ ...+..+||.|++..|.
T Consensus 226 tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~--------~~~i~~iHGK~~q~~R~ 297 (567)
T KOG0345|consen 226 TPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLK--------KREIFSIHGKMSQKARA 297 (567)
T ss_pred CchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhC--------CCcEEEecchhcchhHH
Confidence 7899999999999999999999999999889999999999999999999988744 67899999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.++++|+...-.+|+|||+++||||+|++++||+||+|.++++|.||+||+||.|+.|.+++|+.|+|
T Consensus 298 k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E 365 (567)
T KOG0345|consen 298 KVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPRE 365 (567)
T ss_pred HHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccH
Confidence 99999999888899999999999999999999999999999999999999999999999999999864
No 9
>KOG0342|consensus
Probab=100.00 E-value=3.2e-37 Score=251.83 Aligned_cols=195 Identities=26% Similarity=0.414 Sum_probs=179.0
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhccccc-CCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLF-QPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
-+++||...+..|+..+|..+|+++||||+|++++++++..++ +|..+.+.....
T Consensus 242 lLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~------------------------ 297 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGE------------------------ 297 (543)
T ss_pred hhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCC------------------------
Confidence 3578999999999999999999999999999999999998776 477777654332
Q ss_pred ccCcccccceeeecCCCChHHHHHHHHHhcCC-CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM-QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~-~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
..+.+.+.|.|+.++...++..++.+|++... .++||||+|+..+..+++.|+.. ...|..+||+.++.
T Consensus 298 ~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~----------dlpv~eiHgk~~Q~ 367 (543)
T KOG0342|consen 298 RETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI----------DLPVLEIHGKQKQN 367 (543)
T ss_pred cchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc----------CCchhhhhcCCccc
Confidence 34678899999999999999999999988865 89999999999999999999987 89999999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.|..+..+|+..+.-||+|||+++||+|+|+|+.|+++|.|+++.+|+||+||+||.|..|.+++++.|+|
T Consensus 368 kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 368 KRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.2e-36 Score=261.09 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=171.5
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
.++++...+..++..++..+|+++||||+|+.+..+...++.+|..+.+... .
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~---------------------------~ 212 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVEST---------------------------H 212 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcC---------------------------C
Confidence 3566667778889999999999999999999999999999999987765411 1
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
....+.+.+..+....|...+..++....+.++||||+++..++.+++.|... ++.+..+||++++.+|.
T Consensus 213 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----------~~~v~~~hg~~~~~eR~ 282 (460)
T PRK11776 213 DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ----------GFSALALHGDLEQRDRD 282 (460)
T ss_pred CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHH
Confidence 23446677777787889999999998888889999999999999999999887 88999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.++++|+.|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|..|.+++++.++|
T Consensus 283 ~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e 350 (460)
T PRK11776 283 QVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEE 350 (460)
T ss_pred HHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999998764
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.4e-36 Score=259.63 Aligned_cols=193 Identities=26% Similarity=0.367 Sum_probs=167.0
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhccccc-CCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLF-QPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~-~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
.++++...+..++..+++++|+++||||+|.+++.+++.++. +|..+.+.... .
T Consensus 290 ld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~-------------------------l 344 (545)
T PTZ00110 290 LDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLD-------------------------L 344 (545)
T ss_pred hhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCc-------------------------c
Confidence 456677777888888989999999999999999998888775 46555442110 1
Q ss_pred cCcccccceeeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 83 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
....++++.+..+....|...|..++... .+.++||||++++.|+.+++.|... ++.+..+||++++.
T Consensus 345 ~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~----------g~~~~~ihg~~~~~ 414 (545)
T PTZ00110 345 TACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD----------GWPALCIHGDKKQE 414 (545)
T ss_pred ccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc----------CCcEEEEECCCcHH
Confidence 23455677777777888888888888765 5679999999999999999999876 78899999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+|..++++|+.|+.+|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++|++++|
T Consensus 415 eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 415 ERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred HHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764
No 12
>KOG0336|consensus
Probab=100.00 E-value=1.3e-36 Score=243.80 Aligned_cols=195 Identities=24% Similarity=0.367 Sum_probs=176.4
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
+|++|+|+..+.+|+.-..+++|+++.|||+|+.+..+++.++++|..+.+....
T Consensus 378 rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLd------------------------- 432 (629)
T KOG0336|consen 378 RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLD------------------------- 432 (629)
T ss_pred hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccc-------------------------
Confidence 5789999999999999999999999999999999999999999999877764211
Q ss_pred ccCcccccceeeecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
......++|.+....++.|+..+-.++..+ ...++||||..+-.|+.+..-|.-. ++....+||+.++.
T Consensus 433 L~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~----------gi~~q~lHG~r~Q~ 502 (629)
T KOG0336|consen 433 LVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK----------GISSQSLHGNREQS 502 (629)
T ss_pred eeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc----------ccchhhccCChhhh
Confidence 123456788887777888998888888777 5789999999999999998888766 88899999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+|+..++.|++|+++|||||++++||+|+|+++||+|||+|.+.+.|+||+||+||.|+.|.++.|++-+|
T Consensus 503 DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D 573 (629)
T KOG0336|consen 503 DREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRND 573 (629)
T ss_pred hHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998654
No 13
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.4e-35 Score=260.58 Aligned_cols=191 Identities=27% Similarity=0.427 Sum_probs=169.7
Q ss_pred CCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccC
Q psy9509 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTT 84 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
.+++...+..++..++..+|+++||||+|+.+..+.+.++.+|..+.+... ...
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~--------------------------~~~ 216 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSS--------------------------VTT 216 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCc--------------------------ccc
Confidence 456666677788889999999999999999999999999999987765411 123
Q ss_pred cccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH
Q psy9509 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~ 164 (231)
...+.+.+..+....|...|..++......++||||+|+..++.+++.|... ++.+..+||++++.+|.+
T Consensus 217 ~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~----------g~~~~~lhgd~~q~~R~~ 286 (629)
T PRK11634 217 RPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN----------GYNSAALNGDMNQALREQ 286 (629)
T ss_pred CCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC----------CCCEEEeeCCCCHHHHHH
Confidence 3456677777777889999999998877789999999999999999999887 889999999999999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++++|+.|+.+|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++|+++.|
T Consensus 287 il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred HHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998653
No 14
>KOG0341|consensus
Probab=100.00 E-value=1e-36 Score=243.09 Aligned_cols=192 Identities=26% Similarity=0.429 Sum_probs=176.5
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
|+.+|||.-.+..|+..+...+|++|||||+|..++.+++.-+-.|+.+.+.- .+
T Consensus 337 RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGR--AG----------------------- 391 (610)
T KOG0341|consen 337 RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGR--AG----------------------- 391 (610)
T ss_pred HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEeccc--cc-----------------------
Confidence 56799999999999999999999999999999999999999998998877641 11
Q ss_pred ccCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHH
Q psy9509 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 161 (231)
...-++.+.+.++..+.|+.+|++.|++..+ +++|||..+..++.+.++|--. +..+..+||+-++++
T Consensus 392 -AAsldViQevEyVkqEaKiVylLeCLQKT~P-pVLIFaEkK~DVD~IhEYLLlK----------GVEavaIHGGKDQed 459 (610)
T KOG0341|consen 392 -AASLDVIQEVEYVKQEAKIVYLLECLQKTSP-PVLIFAEKKADVDDIHEYLLLK----------GVEAVAIHGGKDQED 459 (610)
T ss_pred -ccchhHHHHHHHHHhhhhhhhHHHHhccCCC-ceEEEeccccChHHHHHHHHHc----------cceeEEeecCcchhH
Confidence 1234567788889999999999999988775 7999999999999999999877 899999999999999
Q ss_pred HHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 162 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|...++.|+.|+-+|||||++++.|+|+|++.||||||.|.+.+.|+||+||+||.|..|.+.+|+++.
T Consensus 460 R~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 460 RHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred HHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999865
No 15
>KOG0332|consensus
Probab=100.00 E-value=2e-35 Score=234.24 Aligned_cols=184 Identities=26% Similarity=0.387 Sum_probs=167.6
Q ss_pred eeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 12 ~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
-.+|...+|+++|+++||||+.+.+..++.....+|..+.+.. +.....+++++
T Consensus 254 S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~--------------------------eel~L~~IkQl 307 (477)
T KOG0332|consen 254 SIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKR--------------------------EELALDNIKQL 307 (477)
T ss_pred chhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeeh--------------------------hhccccchhhh
Confidence 3457777889999999999999999999999999998888762 33456889999
Q ss_pred eeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 92 LTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 92 ~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
|..|.. ..|+.+|.+++....-++.||||.|++.+..+++.+... |..+..+||++...+|..++++|+
T Consensus 308 yv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~----------Gh~V~~l~G~l~~~~R~~ii~~Fr 377 (477)
T KOG0332|consen 308 YVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE----------GHQVSLLHGDLTVEQRAAIIDRFR 377 (477)
T ss_pred eeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc----------CceeEEeeccchhHHHHHHHHHHh
Confidence 998875 679999999887777789999999999999999999988 999999999999999999999999
Q ss_pred cCCccEEEEcCccccccCcCCCcEEEEecCCC------CHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 171 RRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.|..+|||+|++++||||++.|+.|+|||.|. +.+.|+||+||+||+|..|.++.++..++
T Consensus 378 ~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 378 EGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKD 444 (477)
T ss_pred cCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccC
Confidence 99999999999999999999999999999994 79999999999999999999999988653
No 16
>KOG0340|consensus
Probab=100.00 E-value=3.6e-35 Score=231.46 Aligned_cols=192 Identities=27% Similarity=0.434 Sum_probs=167.2
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
-.|...+..+++.+|..+|+++||||+++.+..+...-..++.-+... ..+..+++
T Consensus 168 ~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e------------------------~~~~vstv 223 (442)
T KOG0340|consen 168 GCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELE------------------------VIDGVSTV 223 (442)
T ss_pred cchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEe------------------------ccCCCCch
Confidence 345556667888899999999999999987777666544443222211 01234678
Q ss_pred ccccceeeecCCCChHHHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
+.+.+.|..++...|-.+|+.+|+.. ..+.++||+|+..+|+.++..|+.. .+++..+||.|++.+|
T Consensus 224 etL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l----------e~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 224 ETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL----------EVRVVSLHSQMPQKER 293 (442)
T ss_pred hhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh----------ceeeeehhhcchHHHH
Confidence 99999999999999999999999776 3578999999999999999999998 8999999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
...+.+|+++.++||||||+++||+|+|.|..|+|+|.|.++..|+||+||++|.|+.|.++.++++.|
T Consensus 294 ~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 294 LAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred HHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999765
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-35 Score=252.38 Aligned_cols=190 Identities=29% Similarity=0.403 Sum_probs=162.5
Q ss_pred CcceeeeeccccCCCC--CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 6 VGGLVIMWDTFLTYPS--RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~--~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
.++...+..++..++. .+|.++||||++..+..+....+.+|..+.+... ..
T Consensus 172 ~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~--------------------------~~ 225 (423)
T PRK04837 172 LGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPE--------------------------QK 225 (423)
T ss_pred cccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCC--------------------------Cc
Confidence 3444444556666663 5678999999998899888888888877665311 11
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
....+++.+.++....|...|..++......++||||+++..|+.+++.|... ++.+..+||++++.+|.
T Consensus 226 ~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----------g~~v~~lhg~~~~~~R~ 295 (423)
T PRK04837 226 TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD----------GHRVGLLTGDVAQKKRL 295 (423)
T ss_pred CCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC----------CCcEEEecCCCChhHHH
Confidence 23455666667777788899999988777789999999999999999999876 88999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.++++|+.|+++|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|..|.+++|++++|
T Consensus 296 ~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~ 363 (423)
T PRK04837 296 RILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEY 363 (423)
T ss_pred HHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998653
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-35 Score=252.11 Aligned_cols=190 Identities=31% Similarity=0.471 Sum_probs=165.6
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
+++...+..++..++..+|+++||||+++++..+...++.+|..+.+... ....
T Consensus 164 ~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~--------------------------~~~~ 217 (456)
T PRK10590 164 MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARR--------------------------NTAS 217 (456)
T ss_pred cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecc--------------------------cccc
Confidence 44445556677788889999999999998899999988888887765421 1223
Q ss_pred ccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
..+.+.+..+....|...+..++......++||||+++..++.+++.|... ++.+..+||++++.+|.++
T Consensus 218 ~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R~~~ 287 (456)
T PRK10590 218 EQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD----------GIRSAAIHGNKSQGARTRA 287 (456)
T ss_pred cceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC----------CCCEEEEECCCCHHHHHHH
Confidence 456677777777778888888887777789999999999999999999876 8899999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++|++|+++|||||+++++|+|+|++++||+|+.|.+..+|+||+||+||.|..|.+++|+++.|
T Consensus 288 l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d 353 (456)
T PRK10590 288 LADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDE 353 (456)
T ss_pred HHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998654
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-35 Score=255.75 Aligned_cols=189 Identities=28% Similarity=0.442 Sum_probs=164.4
Q ss_pred CcceeeeeccccCCCC--CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 6 VGGLVIMWDTFLTYPS--RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~--~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
+++...+..++..++. .+|+++||||++..+..+...++.+|..+.+... ..
T Consensus 174 ~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~--------------------------~~ 227 (572)
T PRK04537 174 LGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETE--------------------------TI 227 (572)
T ss_pred cchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccc--------------------------cc
Confidence 4444555566666665 6899999999999999999888888876554311 12
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
....+++.+..+....|...|..++....+.++||||+|+..++.+++.|... ++.+..+||++++.+|.
T Consensus 228 ~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----------g~~v~~lhg~l~~~eR~ 297 (572)
T PRK04537 228 TAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH----------GYRVGVLSGDVPQKKRE 297 (572)
T ss_pred cccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHH
Confidence 34556777777788889999999998878889999999999999999999887 88999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+++++|+.|+.+|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++|+.+.
T Consensus 298 ~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 298 SLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER 364 (572)
T ss_pred HHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999764
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.4e-34 Score=250.74 Aligned_cols=191 Identities=25% Similarity=0.398 Sum_probs=161.0
Q ss_pred CCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccC
Q psy9509 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTT 84 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
++++...+..++..++ ++|+++||||+|++++.++..++.++..+..... ...
T Consensus 284 ~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~--------------------------~~~ 336 (518)
T PLN00206 284 ERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNP--------------------------NRP 336 (518)
T ss_pred hcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC--------------------------CCC
Confidence 3445555566666664 6899999999999999999998888877665311 112
Q ss_pred cccccceeeecCCCChHHHHHHHHHhcC--CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 85 PAELSEKLTTCSTNLKPLVLYQLIRKHA--MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~--~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
...+++.+.++....|...|.+++.... ..++||||+++..++.+++.|... .++.+..+||++++.+|
T Consensus 337 ~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~---------~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 337 NKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV---------TGLKALSIHGEKSMKER 407 (518)
T ss_pred CcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc---------cCcceEEeeCCCCHHHH
Confidence 3456677777777778888888887542 358999999999999999999753 16789999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
..++++|+.|+.+|||||+++++|||+|++++||+||.|.+..+|+||+||+||.|..|.+++|++++|
T Consensus 408 ~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~ 476 (518)
T PLN00206 408 REVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEED 476 (518)
T ss_pred HHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999998653
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-34 Score=244.49 Aligned_cols=190 Identities=28% Similarity=0.455 Sum_probs=162.4
Q ss_pred CcceeeeeccccCCCC--CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 6 VGGLVIMWDTFLTYPS--RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~--~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
+++...+.+++..++. ++|++++|||++.++..+++.++.+|..+.+.... .
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~--------------------------~ 305 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN--------------------------V 305 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc--------------------------C
Confidence 4444445566666653 57999999999999999999988888776653211 1
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
...++.+.+..+....|...+..++......++||||++++.++.+++.|... ++.+..+||++++.+|.
T Consensus 306 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R~ 375 (475)
T PRK01297 306 ASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKD----------GINAAQLSGDVPQHKRI 375 (475)
T ss_pred CCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHH
Confidence 23345566666677788889999888877789999999999999999999876 78899999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++++|++|++++||||+++++|||+|++++||+++.|.+..+|+||+||+||.|..|.+++|+.++|
T Consensus 376 ~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 376 KTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred HHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998654
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.2e-34 Score=243.34 Aligned_cols=191 Identities=28% Similarity=0.444 Sum_probs=162.7
Q ss_pred CCcceeeeeccccCCCCCCcEEEEeeecCCC-hhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHD-PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~q~il~SATl~~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
++++...+..+...++...|+++||||++.. +..+...++.+|..+..... ..
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~--------------------------~~ 214 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPS--------------------------RR 214 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCC--------------------------cc
Confidence 4555666666777788889999999999854 77788888888877665311 12
Q ss_pred CcccccceeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 84 TPAELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 84 ~~~~~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
...++.+.+..+.. +.|...|..++......++||||++++.++.+++.|+.. ++.+..+||++++.+|
T Consensus 215 ~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----------~~~~~~l~g~~~~~~R 284 (434)
T PRK11192 215 ERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA----------GINCCYLEGEMVQAKR 284 (434)
T ss_pred cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC----------CCCEEEecCCCCHHHH
Confidence 23455666665553 668888888888767789999999999999999999876 8899999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
..++++|++|+++|||||+++++|+|+|++++||+||.|.+...|+||+||+||.|..|.++++++.+|
T Consensus 285 ~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d 353 (434)
T PRK11192 285 NEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHD 353 (434)
T ss_pred HHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997653
No 23
>KOG0335|consensus
Probab=100.00 E-value=4.3e-34 Score=236.19 Aligned_cols=193 Identities=29% Similarity=0.406 Sum_probs=172.1
Q ss_pred cccC-CcceeeeeccccCCCC----CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCC
Q psy9509 2 RRRG-VGGLVIMWDTFLTYPS----RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSS 76 (231)
Q Consensus 2 ~~~~-~~~~~~~~~i~~~~~~----~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (231)
||.+ |+|.-.+..|+.+... .+|.+|||||+|.++..++..++.+-+....+..
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~r--------------------- 295 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGR--------------------- 295 (482)
T ss_pred HhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEee---------------------
Confidence 4667 9999999999998764 7899999999999999999888887543322211
Q ss_pred cccccccCcccccceeeecCCCChHHHHHHHHHhcC----C-----CcEEEEEcchHHHHHHHHHHhhhccccccCCCCc
Q psy9509 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHA----M-----QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147 (231)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~----~-----~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~ 147 (231)
.-..+.++.|.+.++.+..|...|+++|.... . .+++|||.|++.+..++..|... +
T Consensus 296 ----vg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~----------~ 361 (482)
T KOG0335|consen 296 ----VGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN----------G 361 (482)
T ss_pred ----eccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC----------C
Confidence 12467899999999999999999999997553 2 27999999999999999999987 8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEe
Q psy9509 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 148 ~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
+.+..+||..++.+|.+.++.|+.|+.++||||++++||+|+|+|.+||+||.|.+...|+||+||+||.|+.|.++.|+
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy9509 228 TT 229 (231)
Q Consensus 228 ~~ 229 (231)
+.
T Consensus 442 n~ 443 (482)
T KOG0335|consen 442 NE 443 (482)
T ss_pred cc
Confidence 84
No 24
>KOG0338|consensus
Probab=100.00 E-value=4.5e-35 Score=240.33 Aligned_cols=193 Identities=33% Similarity=0.499 Sum_probs=170.8
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
|+.=+|...+.+|++..|.++|++|||||++.++..++...++.|+.+.+.. ..
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~--------------------------~~ 392 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDP--------------------------NK 392 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCC--------------------------cc
Confidence 4445667778889999999999999999999999999999999999888762 22
Q ss_pred cCcccccceeeecC---CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 83 TTPAELSEKLTTCS---TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 83 ~~~~~~~~~~~~~~---~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
..+..+.|.|+.+- +..+...|..++......++|||+.|++.|+++.=+|-.. |..+..+||++++
T Consensus 393 ~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl----------gl~agElHGsLtQ 462 (691)
T KOG0338|consen 393 DTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL----------GLKAGELHGSLTQ 462 (691)
T ss_pred ccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh----------hchhhhhcccccH
Confidence 34566777666443 3557788888888888889999999999999998777666 8899999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|...+++|+.+++++||||++++||+||++|..||||..|.+...|+||+||++|.|+.|.++.|+.+.|
T Consensus 463 ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 463 EQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred HHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997654
No 25
>KOG0348|consensus
Probab=100.00 E-value=6e-34 Score=234.84 Aligned_cols=225 Identities=21% Similarity=0.362 Sum_probs=178.8
Q ss_pred CCcceeeeeccccCC-------------CCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCccccc
Q psy9509 5 GVGGLVIMWDTFLTY-------------PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~-------------~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~ 71 (231)
++||...+..|+..+ |+..|.+|+||||.+.+..+++..++||..|.......... -........
T Consensus 301 eLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~--p~~~a~~ev 378 (708)
T KOG0348|consen 301 ELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLN--PKDKAVQEV 378 (708)
T ss_pred hccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcC--cchhhhhhc
Confidence 466666665555544 33479999999999999999999999999998322211111 000111111
Q ss_pred -CCCCCcccccccCcccccceeeecCCCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccC---
Q psy9509 72 -DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKG--- 143 (231)
Q Consensus 72 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~--- 143 (231)
....++..+.+..|+++.+.|..++...++.+|..+|.+. ...++|||+.+.+.++.-|.++.+.+....++
T Consensus 379 ~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~ 458 (708)
T KOG0348|consen 379 DDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSG 458 (708)
T ss_pred CCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccC
Confidence 1123444467889999999999999999999988877554 45689999999999999999998875542111
Q ss_pred ---------CCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhccc
Q psy9509 144 ---------AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214 (231)
Q Consensus 144 ---------~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~ 214 (231)
..-+.++..+||+|++++|..+++.|+.....||+|||+++||+|+|.|.+||+||.|.++.+|+||+||+
T Consensus 459 ~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRT 538 (708)
T KOG0348|consen 459 APDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRT 538 (708)
T ss_pred CcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhh
Confidence 12246789999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeecCC
Q psy9509 215 ARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 215 gR~g~~g~~~~~~~~~~ 231 (231)
+|.|.+|.+++|..|.|
T Consensus 539 ARaG~kG~alLfL~P~E 555 (708)
T KOG0348|consen 539 ARAGEKGEALLFLLPSE 555 (708)
T ss_pred hhccCCCceEEEecccH
Confidence 99999999999998865
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-32 Score=232.53 Aligned_cols=185 Identities=28% Similarity=0.471 Sum_probs=156.4
Q ss_pred eeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccc
Q psy9509 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSE 90 (231)
Q Consensus 11 ~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
.+.+++..++++.|++++|||+|+++..+...++.+|..+.+.... .....+.+
T Consensus 190 ~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 243 (401)
T PTZ00424 190 QIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDE--------------------------LTLEGIRQ 243 (401)
T ss_pred HHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCC--------------------------cccCCceE
Confidence 3455677788899999999999988888888888888765543110 12234455
Q ss_pred eeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 91 KLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 91 ~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.+..+.. ..+...+..++......++||||++++.++.+++.|... +..+..+||++++.+|..++++|
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~----------~~~~~~~h~~~~~~~R~~i~~~f 313 (401)
T PTZ00424 244 FYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHER----------DFTVSCMHGDMDQKDRDLIMREF 313 (401)
T ss_pred EEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHC----------CCcEEEEeCCCCHHHHHHHHHHH
Confidence 5555443 446777777777767778999999999999999999876 78899999999999999999999
Q ss_pred HcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.|+++|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|..|.|+++++++|
T Consensus 314 ~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~ 375 (401)
T PTZ00424 314 RSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDD 375 (401)
T ss_pred HcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999998653
No 27
>KOG0346|consensus
Probab=100.00 E-value=5e-33 Score=224.77 Aligned_cols=193 Identities=32% Similarity=0.514 Sum_probs=175.9
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
.-+|+...+..+...+|+..|.+|||||+++++..+.+.++++|........ +.+
T Consensus 183 lsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~-------------------------el~ 237 (569)
T KOG0346|consen 183 LSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEG-------------------------ELP 237 (569)
T ss_pred hhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccc-------------------------cCC
Confidence 3477888888999999999999999999999999999999999998776522 223
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
.++++.|+.+.|.+++|+..++.+++-. -.+++|||+||.+.|.++.-.|.+. |+....+.|.++..-|
T Consensus 238 ~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqF----------GiksciLNseLP~NSR 307 (569)
T KOG0346|consen 238 NPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQF----------GIKSCILNSELPANSR 307 (569)
T ss_pred CcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHh----------CcHhhhhcccccccch
Confidence 5789999999999999999999988754 5568999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCc-----------------------------------cccccCcCCCcEEEEecCCCCHHHH
Q psy9509 163 NKIIQEFRRRKIDLVVASDN-----------------------------------LARGIDVENIDVVINYEAPDNIKKY 207 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~-----------------------------------~~~Gidi~~v~~vi~~~~p~~~~~~ 207 (231)
.-++++|+.|..+++||||. .+||||+..|++|+|||+|.++.+|
T Consensus 308 ~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sY 387 (569)
T KOG0346|consen 308 CHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSY 387 (569)
T ss_pred hhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHH
Confidence 99999999999999999992 6799999999999999999999999
Q ss_pred HHHhcccccCCCCceEEEEeecCC
Q psy9509 208 IHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 208 ~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+||+||++|.++.|.++.|+.|.|
T Consensus 388 IHRvGRTaRg~n~GtalSfv~P~e 411 (569)
T KOG0346|consen 388 IHRVGRTARGNNKGTALSFVSPKE 411 (569)
T ss_pred HHhccccccCCCCCceEEEecchH
Confidence 999999999999999999999864
No 28
>KOG0327|consensus
Probab=100.00 E-value=9.1e-33 Score=220.08 Aligned_cols=188 Identities=28% Similarity=0.450 Sum_probs=174.1
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
.|++..+..+++.+|++.|++++|||+|.++....+.+|++|..+.+.... .+.
T Consensus 184 ~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--------------------------ltl 237 (397)
T KOG0327|consen 184 RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--------------------------LTL 237 (397)
T ss_pred cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--------------------------hhh
Confidence 467778889999999999999999999999999999999999998876322 346
Q ss_pred ccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
+.+++++..+..+.|+..|..+.+ ...+.+|||||++.+..+...|..+ +..+..+||++.+.+|..+
T Consensus 238 ~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~----------~~~~s~~~~d~~q~~R~~~ 305 (397)
T KOG0327|consen 238 EGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH----------GFTVSAIHGDMEQNERDTL 305 (397)
T ss_pred hheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC----------CceEEEeecccchhhhhHH
Confidence 788999999999999999999998 5567999999999999999999777 8899999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.+|+.|..+|||.|+.+++|+|+..+..|++|+.|....+|+||+||+||.|.+|.++.+++++|
T Consensus 306 ~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d 371 (397)
T KOG0327|consen 306 MREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEED 371 (397)
T ss_pred HHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhh
Confidence 999999999999999999999999999999999999999999999999999999999999998754
No 29
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=5.2e-31 Score=232.18 Aligned_cols=174 Identities=18% Similarity=0.258 Sum_probs=141.2
Q ss_pred cCCCCCCcEEEEeeecCCChhhhhcc--cccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeee
Q psy9509 17 LTYPSRPQRLLFSATLSHDPEKLHQL--SLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTT 94 (231)
Q Consensus 17 ~~~~~~~q~il~SATl~~~~~~~~~~--~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (231)
....++.|++++|||+++.+...... .+.+|....... ...++ .+..
T Consensus 169 ~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~-----------------------------~r~nl--~~~v 217 (607)
T PRK11057 169 RQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-----------------------------DRPNI--RYTL 217 (607)
T ss_pred HHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC-----------------------------CCCcc--eeee
Confidence 33335789999999999776553322 344554333210 01122 2223
Q ss_pred cCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
+....+...+...+....+.++||||+|++.|+.+++.|+.. ++.+..+||++++.+|.+++++|+.|+.
T Consensus 218 ~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~ 287 (607)
T PRK11057 218 VEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----------GISAAAYHAGLDNDVRADVQEAFQRDDL 287 (607)
T ss_pred eeccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----------CCCEEEecCCCCHHHHHHHHHHHHCCCC
Confidence 334455667777777777889999999999999999999987 8899999999999999999999999999
Q ss_pred cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+|||||+++++|||+|+|++||+++.|.+.++|+||+||+||.|..|.+++|+++.|
T Consensus 288 ~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d 344 (607)
T PRK11057 288 QIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD 344 (607)
T ss_pred CEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHH
Confidence 999999999999999999999999999999999999999999999999999998754
No 30
>KOG0339|consensus
Probab=99.97 E-value=1.5e-31 Score=219.69 Aligned_cols=194 Identities=28% Similarity=0.389 Sum_probs=174.1
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
||.+|||+.....|-....+++|+++||||++..++.+++.++.+|+.+.....
T Consensus 381 rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~v-------------------------- 434 (731)
T KOG0339|consen 381 RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEV-------------------------- 434 (731)
T ss_pred hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeeh--------------------------
Confidence 577899999999999999999999999999999999999999999987765411
Q ss_pred ccCcccccceeeecCC-CChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 82 FTTPAELSEKLTTCST-NLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
-.....+.|.+..|+. +.|+..|...|... ..+++|||+..+..++.++..|... ++.+..+||++.+
T Consensus 435 gean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk----------~~~v~llhgdkdq 504 (731)
T KOG0339|consen 435 GEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK----------GFNVSLLHGDKDQ 504 (731)
T ss_pred hccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc----------cceeeeecCchhh
Confidence 1234557777776665 56788887766554 6679999999999999999999887 8999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|.+++.+|+.+...||++|+++++|+|+|++..|++||.-.+.+.|.||+||+||.|.+|.++.+++++|
T Consensus 505 a~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKD 576 (731)
T KOG0339|consen 505 AERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKD 576 (731)
T ss_pred HHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999875
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=6.3e-31 Score=225.91 Aligned_cols=172 Identities=18% Similarity=0.303 Sum_probs=136.9
Q ss_pred CCCCcEEEEeeecCCChhhhhcc--cccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCC
Q psy9509 20 PSRPQRLLFSATLSHDPEKLHQL--SLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCST 97 (231)
Q Consensus 20 ~~~~q~il~SATl~~~~~~~~~~--~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (231)
.++.|++++|||+++.+...... .+.+|..+..... ..++...+. ...
T Consensus 160 ~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-----------------------------r~nl~~~v~-~~~ 209 (470)
T TIGR00614 160 FPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-----------------------------RPNLYYEVR-RKT 209 (470)
T ss_pred cCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-----------------------------CCCcEEEEE-eCC
Confidence 35789999999999776554332 3445544432211 112211111 111
Q ss_pred CChHHHHHHHHH-hcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 98 NLKPLVLYQLIR-KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 98 ~~k~~~l~~ll~-~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
......+..++. ...+.++||||+|++.++.+++.|+.. ++.+..+||++++.+|.+++++|+.|+++|
T Consensus 210 ~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~----------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~v 279 (470)
T TIGR00614 210 PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL----------GIAAGAYHAGLEISARDDVHHKFQRDEIQV 279 (470)
T ss_pred ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc----------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcE
Confidence 234556666665 446667799999999999999999887 889999999999999999999999999999
Q ss_pred EEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 177 lv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
||||+++++|||+|++++||+++.|.+.+.|+||+||+||.|..|.+++|+++.|
T Consensus 280 LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d 334 (470)
T TIGR00614 280 VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPAD 334 (470)
T ss_pred EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhH
Confidence 9999999999999999999999999999999999999999999999999998764
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=6.1e-31 Score=236.63 Aligned_cols=185 Identities=15% Similarity=0.175 Sum_probs=143.1
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhccc--ccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLS--LFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~--~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
++..+..+.++....+.+|++++|||++..+...+... +.++..+... .
T Consensus 600 FRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S-----------------------------f 650 (1195)
T PLN03137 600 FRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS-----------------------------F 650 (1195)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc-----------------------------c
Confidence 33344444445555567899999999998877744433 3344333211 0
Q ss_pred CcccccceeeecCCCCh-HHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHH
Q psy9509 84 TPAELSEKLTTCSTNLK-PLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k-~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 161 (231)
...++ .+..++...+ ...+..++... .+.++||||+|+..|+.+++.|+.. ++.+..+||+|++.+
T Consensus 651 ~RpNL--~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~----------Gika~~YHAGLs~ee 718 (1195)
T PLN03137 651 NRPNL--WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEF----------GHKAAFYHGSMDPAQ 718 (1195)
T ss_pred Cccce--EEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHC----------CCCeeeeeCCCCHHH
Confidence 11222 2223333322 34555665543 4568999999999999999999887 899999999999999
Q ss_pred HHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 162 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|..++++|..|+++|||||+++++|||+|+|++||||+.|.+.++|+||+||+||.|..+.|++|+.+.|
T Consensus 719 R~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D 788 (1195)
T PLN03137 719 RAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSD 788 (1195)
T ss_pred HHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999997643
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.97 E-value=8.9e-30 Score=227.81 Aligned_cols=198 Identities=17% Similarity=0.202 Sum_probs=136.0
Q ss_pred cccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeee
Q psy9509 15 TFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTT 94 (231)
Q Consensus 15 i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (231)
+...++.++|++++|||+++. ..++..++..|..+... ...+.. ......+.+...+..... .. ....
T Consensus 187 i~~~~g~~~q~i~~SATi~n~-~~~~~~l~g~~~~~i~~-~~~~~~----~~~~~~~~p~~~~~~~~~----~~--~~r~ 254 (742)
T TIGR03817 187 LCARYGASPVFVLASATTADP-AAAASRLIGAPVVAVTE-DGSPRG----ARTVALWEPPLTELTGEN----GA--PVRR 254 (742)
T ss_pred HHHhcCCCCEEEEEecCCCCH-HHHHHHHcCCCeEEECC-CCCCcC----ceEEEEecCCcccccccc----cc--cccc
Confidence 344567789999999999965 45666666666433211 110000 000000000000000000 00 0000
Q ss_pred cCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
.....+...+..++.. +.++||||+|++.++.++..|++.+.... ...+..+..+||++++++|.+++++|++|++
T Consensus 255 ~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~--~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i 330 (742)
T TIGR03817 255 SASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVD--PDLAERVAAYRAGYLPEDRRELERALRDGEL 330 (742)
T ss_pred chHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhc--cccccchhheecCCCHHHHHHHHHHHHcCCc
Confidence 0112344555565543 56899999999999999999876532111 1124578899999999999999999999999
Q ss_pred cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
++||||+++++|||+|++++||+++.|.+..+|+||+||+||.|..|.++++..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVAR 384 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeC
Confidence 999999999999999999999999999999999999999999999999999886
No 34
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=1.1e-29 Score=223.84 Aligned_cols=169 Identities=21% Similarity=0.346 Sum_probs=138.8
Q ss_pred CCcEEEEeeecCCChhhhhcccc--cCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCC
Q psy9509 22 RPQRLLFSATLSHDPEKLHQLSL--FQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL 99 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~~~~~~~--~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
+.+++++|||.++.+...+...+ .++..+... ....++ .+.......
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~-----------------------------~~r~nl--~~~v~~~~~ 210 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLADANEFITS-----------------------------FDRPNL--RFSVVKKNN 210 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC-----------------------------CCCCCc--EEEEEeCCC
Confidence 45699999999988776444433 233332211 011122 233334456
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
+...+.+.+....+.++||||+|++.++.+++.|... ++.+..+||+|+..+|..++++|..|.++||||
T Consensus 211 ~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~----------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVa 280 (591)
T TIGR01389 211 KQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ----------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVA 280 (591)
T ss_pred HHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 7777888888777789999999999999999999876 888999999999999999999999999999999
Q ss_pred cCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 180 SDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 180 T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|+++++|||+|++++||+++.|.+.++|+|++||+||.|..+.+++++++.|
T Consensus 281 T~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d 332 (591)
T TIGR01389 281 TNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPAD 332 (591)
T ss_pred echhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHH
Confidence 9999999999999999999999999999999999999999999999987653
No 35
>KOG0334|consensus
Probab=99.96 E-value=4.2e-30 Score=226.40 Aligned_cols=193 Identities=28% Similarity=0.455 Sum_probs=176.1
Q ss_pred cccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc
Q psy9509 2 RRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK 81 (231)
Q Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (231)
|+.+|+|.-.+..|+..+++++|+++||||+|..++.++...++.|..+.+. ..
T Consensus 526 rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~--------------------------~~ 579 (997)
T KOG0334|consen 526 RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVG--------------------------GR 579 (997)
T ss_pred hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEc--------------------------cc
Confidence 4558999999999999999999999999999999999999999999886654 12
Q ss_pred ccCcccccceeeecC-CCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 82 FTTPAELSEKLTTCS-TNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
......+.+.+..|+ ++.|+..|.++|... ...++||||.+.+.|..+.+.|.+. ++.+..+||+.++
T Consensus 580 svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a----------g~~~~slHGgv~q 649 (997)
T KOG0334|consen 580 SVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA----------GYNCDSLHGGVDQ 649 (997)
T ss_pred eeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc----------CcchhhhcCCCch
Confidence 344567888888888 889999999999765 5679999999999999999999976 8898899999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.+|..+++.|+++.+++||||+++++|+|++.+..|||||+|...+.|+||+||+||.|++|.+++|++|.
T Consensus 650 ~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 650 HDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred HHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999984
No 36
>KOG0344|consensus
Probab=99.96 E-value=2.9e-29 Score=209.41 Aligned_cols=176 Identities=32% Similarity=0.461 Sum_probs=156.4
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecC-CCC
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCS-TNL 99 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 99 (231)
++..+-+||||++..+++.++..+.++..+.+...+ +...++.|...+|. ...
T Consensus 320 ~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~--------------------------sa~~~V~QelvF~gse~~ 373 (593)
T KOG0344|consen 320 PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRN--------------------------SANETVDQELVFCGSEKG 373 (593)
T ss_pred cchhhhhhhccccHHHHHHHHHhhccceeEEEecch--------------------------hHhhhhhhhheeeecchh
Confidence 567888999999999999999999888877765221 22456777766654 577
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
|+.++.+++...-..+++||+.+.+.|.+++..|... + ++.+.++||..++.+|.+.+++|+.|++++|||
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~-~--------~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY-D--------NINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc-c--------CcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 9999999999887789999999999999999999532 2 789999999999999999999999999999999
Q ss_pred cCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 180 SDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 180 T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|++++||+|+.+++.|||||+|.+.-+|+||+||+||.|+.|.+++||+++|
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d 496 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQD 496 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEecccc
Confidence 9999999999999999999999999999999999999999999999999865
No 37
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=7.7e-29 Score=211.62 Aligned_cols=189 Identities=18% Similarity=0.269 Sum_probs=150.1
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcc--cccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQL--SLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~--~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
+++++..+..+..+...-++++++.+|||-++.+...+.. .+..+..+.....
T Consensus 147 GhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd------------------------- 201 (590)
T COG0514 147 GHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD------------------------- 201 (590)
T ss_pred CCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC-------------------------
Confidence 3567777777776655445999999999999988875554 4445555554322
Q ss_pred cccCcccccceeeecC-CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 81 KFTTPAELSEKLTTCS-TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 81 ~~~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
.+|+...+.... ...+...+.+ +......+.||||.|++.++.+++.|+.. +..+..||++|+.
T Consensus 202 ----RpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----------g~~a~~YHaGl~~ 266 (590)
T COG0514 202 ----RPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKN----------GISAGAYHAGLSN 266 (590)
T ss_pred ----CchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHC----------CCceEEecCCCCH
Confidence 233333322211 1223332222 12345667999999999999999999987 8999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|..+.++|..++.+|+|||.++++|||-|+|.+|||++.|.|.++|.|.+|||||.|....|++++.+.|
T Consensus 267 ~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D 338 (590)
T COG0514 267 EERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPED 338 (590)
T ss_pred HHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876
No 38
>KOG0347|consensus
Probab=99.96 E-value=8.4e-31 Score=216.99 Aligned_cols=141 Identities=30% Similarity=0.504 Sum_probs=130.6
Q ss_pred ccccCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
....+...+......|+..+|-.+|+.+|..+++ ++|||||+.+.+.+++-+|+.. ++....+|+.|.+
T Consensus 431 ~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPG-rTlVF~NsId~vKRLt~~L~~L----------~i~p~~LHA~M~Q 499 (731)
T KOG0347|consen 431 PQSATASTLTESLIECPPLEKDLYLYYFLTRYPG-RTLVFCNSIDCVKRLTVLLNNL----------DIPPLPLHASMIQ 499 (731)
T ss_pred cchhHHHHHHHHhhcCCccccceeEEEEEeecCC-ceEEEechHHHHHHHHHHHhhc----------CCCCchhhHHHHH
Confidence 3445667778888888888898888888877775 8999999999999999999988 8999999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|.+.+++|++..-.|||||++++||+|||+|.|||||-.|.+.+.|+||.||++|.+..|.+++++.|.|
T Consensus 500 KqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 500 KQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred HHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865
No 39
>KOG4284|consensus
Probab=99.96 E-value=5e-29 Score=209.89 Aligned_cols=183 Identities=23% Similarity=0.354 Sum_probs=162.3
Q ss_pred eeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 12 ~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
+-.|+..+|..+|++.||||.|..+..++..+|++|..++.... ....-.++++
T Consensus 189 In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~--------------------------d~~L~GikQy 242 (980)
T KOG4284|consen 189 INIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNAD--------------------------DVQLFGIKQY 242 (980)
T ss_pred HHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccC--------------------------Cceeechhhe
Confidence 34478889999999999999999999999999999999887522 1223456676
Q ss_pred eeecCC--------CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 92 LTTCST--------NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 92 ~~~~~~--------~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
+...+. ..|+..|-+++...+-.+.||||+....|+-++..|... |+.+..+.|.|++.+|.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss----------G~d~~~ISgaM~Q~~Rl 312 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS----------GLDVTFISGAMSQKDRL 312 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc----------CCCeEEeccccchhHHH
Confidence 664433 247888888888888789999999999999999999987 99999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.++++++.-.++|||+|+..+||||-+.++.|||+|.|.+-..|.||+|||||+|..|.+++|+..+
T Consensus 313 ~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 313 LAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred HHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 40
>KOG0350|consensus
Probab=99.96 E-value=1.5e-28 Score=201.54 Aligned_cols=185 Identities=40% Similarity=0.703 Sum_probs=164.9
Q ss_pred CCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCC
Q psy9509 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTN 98 (231)
Q Consensus 19 ~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
+.+.-+.+.+|||++.+..++.+.-++.|..+.+.. .....++.|..+.+..+.++..
T Consensus 357 ~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~----------------------~~~~ryslp~~l~~~~vv~~~~ 414 (620)
T KOG0350|consen 357 LYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSK----------------------PLIGRYSLPSSLSHRLVVTEPK 414 (620)
T ss_pred cCchhHhhhcchhhhcChHHHhhhhcCCCceEEeec----------------------ccceeeecChhhhhceeecccc
Confidence 345568999999999999999999999997666541 1335688999999999999999
Q ss_pred ChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 99 ~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
.|+.+++.++......++|+|+++.+.+.+++..|+-.+.+ .+..+..+.|.++...|.+.+++|..|.+++||
T Consensus 415 ~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~------~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 415 FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS------DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc------ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 99999999999998899999999999999999999843221 156677799999999999999999999999999
Q ss_pred EcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 179 ~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|||+++||+|+-++++||+||.|.+..+|+||+||++|.|+.|.++.+.+.+|
T Consensus 489 cSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 489 CSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred ehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecccc
Confidence 99999999999999999999999999999999999999999999999988764
No 41
>KOG0337|consensus
Probab=99.95 E-value=3.8e-29 Score=201.39 Aligned_cols=191 Identities=29% Similarity=0.437 Sum_probs=176.9
Q ss_pred CCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccC
Q psy9509 5 GVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTT 84 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
.|||...+-.++..+|..+|+++||||+|..+..+++..+.+|..+...++ ...
T Consensus 178 emgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldve--------------------------tki 231 (529)
T KOG0337|consen 178 EMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVE--------------------------TKI 231 (529)
T ss_pred hhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehh--------------------------hhc
Confidence 578888888999999999999999999999999999999999999986533 235
Q ss_pred cccccceeeecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 85 PAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
.+.++..+..+....|..+|..++... ..++++|||.|+-.++.+...|+.. ++.+..++|.+++..|.
T Consensus 232 se~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~----------g~~~s~iysslD~~aRk 301 (529)
T KOG0337|consen 232 SELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF----------GGEGSDIYSSLDQEARK 301 (529)
T ss_pred chhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc----------CCCccccccccChHhhh
Confidence 678888999999999999999999877 4578999999999999999999987 89999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.-+.+|+.++..+||.|++++||+|+|..+.|||||.|.+..-|+||+||+.|.|+.|++|.++.+.|
T Consensus 302 ~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 302 INGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTD 369 (529)
T ss_pred hccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999998764
No 42
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.95 E-value=1.1e-26 Score=210.57 Aligned_cols=180 Identities=14% Similarity=0.176 Sum_probs=138.2
Q ss_pred eeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccc
Q psy9509 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSE 90 (231)
Q Consensus 11 ~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
..+..+..++.++|+++||||+++....+....+.++..+.... .. ...++.
T Consensus 588 ~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p--~~--------------------------R~~V~t 639 (926)
T TIGR00580 588 KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPP--ED--------------------------RLPVRT 639 (926)
T ss_pred hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCC--CC--------------------------ccceEE
Confidence 34456666778899999999987777666666666776554320 00 011222
Q ss_pred eeeecCCCChHHHHHH-HHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQ-LIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~-ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
++... .. ..+.. ++.. ..+++++||||+++.++.+++.|++..+ +..+..+||.|++.+|.+++++
T Consensus 640 ~v~~~--~~--~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p--------~~~v~~lHG~m~~~eRe~im~~ 707 (926)
T TIGR00580 640 FVMEY--DP--ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVP--------EARIAIAHGQMTENELEEVMLE 707 (926)
T ss_pred EEEec--CH--HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCC--------CCeEEEecCCCCHHHHHHHHHH
Confidence 22211 11 11122 1222 2567899999999999999999988643 6789999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPD-NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|++|+.+|||||+++++|+|+|++++||+++.|. +.++|+||+||+||.|..|+|++++.+.
T Consensus 708 F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 708 FYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999999999999999999875 6889999999999999999999998653
No 43
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.94 E-value=4.4e-26 Score=210.51 Aligned_cols=178 Identities=12% Similarity=0.176 Sum_probs=137.5
Q ss_pred eccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccccccee
Q psy9509 13 WDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKL 92 (231)
Q Consensus 13 ~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (231)
..++..++.++|+++||||+++.+..+....+.++..+..... . ...+++.+
T Consensus 739 ~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~--~--------------------------r~~v~~~~ 790 (1147)
T PRK10689 739 KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA--R--------------------------RLAVKTFV 790 (1147)
T ss_pred HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCC--C--------------------------CCCceEEE
Confidence 4456677889999999999887888877778888876653210 0 01122222
Q ss_pred eecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 93 TTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 93 ~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..... ..+...+.++. .+++++||||+++.++.+++.|++..+ +.++..+||+|++.+|.+++++|++
T Consensus 791 ~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~p--------~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 791 REYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELVP--------EARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred EecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhCC--------CCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 22111 11222222222 457899999999999999999988744 6789999999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
|+.+|||||+++++|+|+|++++||..+.. .+..+|+||+||+||.|..|+|++++.+
T Consensus 860 Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 999999999999999999999999965543 4678899999999999999999998754
No 44
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=2.1e-26 Score=202.47 Aligned_cols=169 Identities=15% Similarity=0.198 Sum_probs=126.0
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecC----
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCS---- 96 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 96 (231)
..+|+++||||+|.+++.+ ..++.+|..+.+... +...+++.+....
T Consensus 320 ~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr----------------------------t~~pV~~~yi~~~~~~~ 370 (675)
T PHA02653 320 KIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG----------------------------TLFPISEVYVKNKYNPK 370 (675)
T ss_pred hcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC----------------------------cCCCeEEEEeecCcccc
Confidence 3469999999999888777 467778877664310 0111222221110
Q ss_pred ------CCChHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHH
Q psy9509 97 ------TNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167 (231)
Q Consensus 97 ------~~~k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~ 167 (231)
...+... ...+.. ..++++|||++++++++.+++.|++..+ +..+..+||++++. ++.++
T Consensus 371 ~~~~y~~~~k~~~-l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~--------~~~v~~LHG~Lsq~--eq~l~ 439 (675)
T PHA02653 371 NKRAYIEEEKKNI-VTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP--------IYDFYIIHGKVPNI--DEILE 439 (675)
T ss_pred cchhhhHHHHHHH-HHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC--------CceEEeccCCcCHH--HHHHH
Confidence 1112222 233322 2356899999999999999999987521 57899999999974 56778
Q ss_pred HH-HcCCccEEEEcCccccccCcCCCcEEEEec---CCC---------CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 168 EF-RRRKIDLVVASDNLARGIDVENIDVVINYE---APD---------NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 168 ~f-~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~---~p~---------~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+| +.|+.+|||||+++++|||+|+|++||++| .|. |.++|.||+||+||. ..|.|+.+++++
T Consensus 440 ~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 440 KVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred HHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 87 689999999999999999999999999998 565 889999999999999 789999999865
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.94 E-value=2.4e-26 Score=203.88 Aligned_cols=182 Identities=15% Similarity=0.146 Sum_probs=133.2
Q ss_pred CCcceeeeeccccCC--CCC---CcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccc
Q psy9509 5 GVGGLVIMWDTFLTY--PSR---PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79 (231)
Q Consensus 5 ~~~~~~~~~~i~~~~--~~~---~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (231)
.++|...+..|+..+ +.. +|+++||||+|.++..+...++.+|..+.+...
T Consensus 183 d~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~------------------------ 238 (844)
T TIGR02621 183 EPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK------------------------ 238 (844)
T ss_pred ccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc------------------------
Confidence 466777777777753 332 699999999998888888778777765554311
Q ss_pred ccccCcccccceeeecCCCChHHHHHHHH---HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCC
Q psy9509 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLI---RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD 156 (231)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~k~~~l~~ll---~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~ 156 (231)
.....++.+. ..+..+.|...+...+ ....++++||||||++.|+.+++.|++. ++ ..+||.
T Consensus 239 --~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~----------g~--~lLHG~ 303 (844)
T TIGR02621 239 --RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE----------KF--ELLTGT 303 (844)
T ss_pred --cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc----------CC--eEeeCC
Confidence 1122333332 3333444544433322 1235678999999999999999999875 44 899999
Q ss_pred CCHHHHH-----HHHHHHHc----CC-------ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCC
Q psy9509 157 LKFDQRN-----KIIQEFRR----RK-------IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220 (231)
Q Consensus 157 ~~~~~r~-----~~~~~f~~----~~-------~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~ 220 (231)
|++.+|. +++++|+. |+ ..|||||+++++|+|++. ++||+...| .++|+||+||+||.|..
T Consensus 304 m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 304 LRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred CCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCC
Confidence 9999999 78999987 44 679999999999999986 788887766 68999999999999975
Q ss_pred -ceEEEEee
Q psy9509 221 -GTSVTLVT 228 (231)
Q Consensus 221 -g~~~~~~~ 228 (231)
+..+.++.
T Consensus 381 ~~~~i~vv~ 389 (844)
T TIGR02621 381 QACQIAVVH 389 (844)
T ss_pred CCceEEEEe
Confidence 44355543
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.93 E-value=1.2e-25 Score=204.76 Aligned_cols=113 Identities=27% Similarity=0.374 Sum_probs=97.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.++++||||||++.|+.++..|.+..+.. ..+..+..+||++++.+|..++++|++|++++||||+++++|||+|+
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~----~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~ 358 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEE----YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGY 358 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhh----ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCC
Confidence 35689999999999999999998753210 11467999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHHhcccccCC-CCceEEEEee
Q psy9509 192 IDVVINYEAPDNIKKYIHRIGRTARGG-RQGTSVTLVT 228 (231)
Q Consensus 192 v~~vi~~~~p~~~~~~~qr~GR~gR~g-~~g~~~~~~~ 228 (231)
+++||+++.|.+..+|+||+||+||.+ ..+.++++..
T Consensus 359 Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 359 IDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred CcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 999999999999999999999999874 3444444443
No 47
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=9.9e-26 Score=202.33 Aligned_cols=176 Identities=18% Similarity=0.233 Sum_probs=132.1
Q ss_pred ccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceee
Q psy9509 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLT 93 (231)
Q Consensus 14 ~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
++...++++.|+|+||||++.+ .+ ..++.++..+... +. ...++++|.
T Consensus 138 ~i~~~lr~dlqlIlmSATl~~~--~l-~~~l~~~~vI~~~----gr-------------------------~~pVe~~y~ 185 (819)
T TIGR01970 138 DVQSSLREDLKILAMSATLDGE--RL-SSLLPDAPVVESE----GR-------------------------SFPVEIRYL 185 (819)
T ss_pred HHHHhcCCCceEEEEeCCCCHH--HH-HHHcCCCcEEEec----Cc-------------------------ceeeeeEEe
Confidence 3445567889999999999744 23 3445454444322 00 011334444
Q ss_pred ecCCCChH-----HHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 94 TCSTNLKP-----LVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 94 ~~~~~~k~-----~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
.+....+. ..+..++.. ..+++|||++++.+++.+++.|++... .++.+..+||++++.+|.++++.
T Consensus 186 ~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~-------~~~~v~pLHg~L~~~eq~~~~~~ 257 (819)
T TIGR01970 186 PLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLD-------SDVLICPLYGELSLAAQDRAIKP 257 (819)
T ss_pred ecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcC-------CCcEEEEecCCCCHHHHHHHHhh
Confidence 33333332 234444443 356899999999999999999986421 16789999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------------------NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|+.|+.+|||||+++++|||+|+|++||++|.|. |.++|.||+||+||. ..|.||.+++++
T Consensus 258 ~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~ 336 (819)
T TIGR01970 258 DPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEE 336 (819)
T ss_pred cccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHH
Confidence 9999999999999999999999999999999874 456799999999998 799999999864
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.93 E-value=2.9e-25 Score=206.90 Aligned_cols=116 Identities=22% Similarity=0.327 Sum_probs=95.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhcccccc----------------C-------CCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATK----------------G-------AGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~----------------~-------~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
...++||||||+..|+.++..|++....... + ......+..+||++++++|..++++
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 4578999999999999999999875321000 0 0001236789999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccC-CCCceEEEEe
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG-GRQGTSVTLV 227 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~-g~~g~~~~~~ 227 (231)
|++|++++||||+.+++|||++++++||+++.|.+..+|+||+||+||. |..+.++++.
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 9999999999999999999999999999999999999999999999996 3345555443
No 49
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.3e-25 Score=193.58 Aligned_cols=168 Identities=15% Similarity=0.128 Sum_probs=138.4
Q ss_pred cEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCChHHH
Q psy9509 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLV 103 (231)
Q Consensus 24 q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 103 (231)
.+..||||.+.....+.+.+..++..|.... +......+.++++....|..+
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~k----------------------------p~~r~~~~~~v~~t~~~K~~a 461 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNR----------------------------PSQRRHLPDEVFLTAAAKWAA 461 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCC----------------------------CccceecCCEEEeCHHHHHHH
Confidence 6789999999777778888777776655430 111223455666777889999
Q ss_pred HHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 104 LYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 104 l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
|.+++... .+.++||||+|++.++.+++.|.+. ++.+..+||.++ +|++.+..|+.+...|+|||+
T Consensus 462 L~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~----------gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATd 529 (656)
T PRK12898 462 VAARVRELHAQGRPVLVGTRSVAASERLSALLREA----------GLPHQVLNAKQD--AEEAAIVARAGQRGRITVATN 529 (656)
T ss_pred HHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEcc
Confidence 99988764 3678999999999999999999987 899999999865 455556666666667999999
Q ss_pred ccccccCcC---CCc-----EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 182 NLARGIDVE---NID-----VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 182 ~~~~Gidi~---~v~-----~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++||+|++ +|. +||+++.|.+...|.||+||+||.|..|.++.|++.+|
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999 665 99999999999999999999999999999999998765
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.93 E-value=1.1e-24 Score=194.15 Aligned_cols=109 Identities=19% Similarity=0.286 Sum_probs=97.2
Q ss_pred CCCcEEEEEcchH--------HHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc
Q psy9509 112 AMQGVLCFVNTAQ--------GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183 (231)
Q Consensus 112 ~~~~~iIF~~s~~--------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 183 (231)
.+.+++|||+..+ .++.+++.|.+.++ +..+..+||+|++.+|.+++++|++|+.+|||||+++
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--------~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--------ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 5679999999654 45667777776532 4789999999999999999999999999999999999
Q ss_pred ccccCcCCCcEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEee
Q psy9509 184 ARGIDVENIDVVINYEAPD-NIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 184 ~~Gidi~~v~~vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
++|+|+|++++||+++.|. ..++++||+||+||.|..|+|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999986 57889999999999999999999985
No 51
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.93 E-value=2e-25 Score=200.67 Aligned_cols=176 Identities=18% Similarity=0.244 Sum_probs=132.3
Q ss_pred ccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceee
Q psy9509 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLT 93 (231)
Q Consensus 14 ~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
+++..++++.|+++||||++.+ .+. .++.++..+... .. ...++++|.
T Consensus 141 ~i~~~lr~~lqlilmSATl~~~--~l~-~~~~~~~~I~~~---gr--------------------------~~pV~~~y~ 188 (812)
T PRK11664 141 DVQQGLRDDLKLLIMSATLDND--RLQ-QLLPDAPVIVSE---GR--------------------------SFPVERRYQ 188 (812)
T ss_pred HHHHhCCccceEEEEecCCCHH--HHH-HhcCCCCEEEec---Cc--------------------------cccceEEec
Confidence 3455677889999999999743 333 344444444321 00 011344444
Q ss_pred ecCCCChHH-----HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 94 TCSTNLKPL-----VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 94 ~~~~~~k~~-----~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
..+...+.. .+..++.. ..+.+|||++++++++.+++.|++..+ .++.+..+||++++.+|.++++.
T Consensus 189 ~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~-------~~~~v~~Lhg~l~~~eq~~~~~~ 260 (812)
T PRK11664 189 PLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVA-------SDVLLCPLYGALSLAEQQKAILP 260 (812)
T ss_pred cCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhcc-------CCceEEEeeCCCCHHHHHHHhcc
Confidence 333333432 34444433 357899999999999999999986321 15789999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCC------------------CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------------------NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~------------------~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|+.|+.+|||||+++++|||+|+|++||+++.+. |.++|.||+||+||. ..|.||.++++.
T Consensus 261 ~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 261 APAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred ccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 9999999999999999999999999999988764 446899999999998 699999999864
No 52
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.92 E-value=1.9e-24 Score=180.25 Aligned_cols=120 Identities=23% Similarity=0.285 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH----HHHHHHcC
Q psy9509 98 NLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK----IIQEFRRR 172 (231)
Q Consensus 98 ~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~----~~~~f~~~ 172 (231)
..+...+..+++.. .++++||||+|++.++.+++.|++... ...+..+||++++.+|.+ ++++|+.|
T Consensus 206 ~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~--------~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~ 277 (358)
T TIGR01587 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP--------EEEIMLLHSRFTEKDRAKKEAELLEEMKKN 277 (358)
T ss_pred ccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC--------CCeEEEEECCCCHHHHHHHHHHHHHHhcCC
Confidence 34566666666543 567999999999999999999987621 236999999999999876 48899999
Q ss_pred CccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCC----ceEEEEee
Q psy9509 173 KIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ----GTSVTLVT 228 (231)
Q Consensus 173 ~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~----g~~~~~~~ 228 (231)
+.++||||+++++|+|++ +++||++..| ..+|+||+||+||.|.. |.++++..
T Consensus 278 ~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~ 334 (358)
T TIGR01587 278 EKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITI 334 (358)
T ss_pred CCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEee
Confidence 999999999999999996 7888887766 78999999999998753 35666654
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.92 E-value=9.4e-24 Score=187.03 Aligned_cols=118 Identities=22% Similarity=0.365 Sum_probs=101.1
Q ss_pred HHHHHHHHhc--CCCcEEEEEcch--------HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 102 LVLYQLIRKH--AMQGVLCFVNTA--------QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 102 ~~l~~ll~~~--~~~~~iIF~~s~--------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..++..+.+. .+.+++|||+.. ..++.+++.|.+.++ +..+..+||+|++.+|.+++++|++
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~--------~~~v~~lHG~m~~~eR~~i~~~F~~ 506 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFP--------KYNVGLLHGRMKSDEKEAVMEEFRE 506 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCC--------CCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3444444332 567899999976 446677777765432 6789999999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEe
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAPD-NIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
|+.+|||||+++++|+|+|++++||+++.|. +.++|+||+||+||.|..|.|++++
T Consensus 507 g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 507 GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999999999999986 6889999999999999999999998
No 54
>KOG0351|consensus
Probab=99.92 E-value=9.6e-25 Score=196.13 Aligned_cols=190 Identities=18% Similarity=0.234 Sum_probs=153.4
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhh--hcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKL--HQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~--~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
++++|..+..+..++.--+.+++|.+|||.+..+..- ..+.+.+|..+...
T Consensus 401 gHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--------------------------- 453 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--------------------------- 453 (941)
T ss_pred cccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc---------------------------
Confidence 3567777777776666555699999999998887763 34566677654433
Q ss_pred cccCcccccceeeecCCCChHHHHHHHH-HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH
Q psy9509 81 KFTTPAELSEKLTTCSTNLKPLVLYQLI-RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159 (231)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~k~~~l~~ll-~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~ 159 (231)
..+.|++..+..-........+...+ ..+....+||||.++.+|+.++..|+.. +.....||++|+.
T Consensus 454 --fnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~----------~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 454 --FNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL----------GKSAAFYHAGLPP 521 (941)
T ss_pred --CCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----------chhhHhhhcCCCH
Confidence 33455555554433222333333333 3447789999999999999999999998 8899999999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|..+.++|..++++|++||=++++|||.|+|++||||+.|.+.+.|.|-+|||||.|....|++|+...|
T Consensus 522 ~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D 593 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYAD 593 (941)
T ss_pred HHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998654
No 55
>PRK02362 ski2-like helicase; Provisional
Probab=99.92 E-value=4.3e-24 Score=192.52 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=99.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccc-----------------cCC---------CCcccEEEEcCCCCHHHHHHH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVAT-----------------KGA---------GTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~-----------------~~~---------~~~~~~~~~h~~~~~~~r~~~ 165 (231)
.++++||||+|+..|+.++..|........ ... ....++..+||++++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 567899999999999999999876422100 000 001478999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec-----CCCCHHHHHHHhcccccCCCC--ceEEEEeec
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE-----APDNIKKYIHRIGRTARGGRQ--GTSVTLVTT 229 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~-----~p~~~~~~~qr~GR~gR~g~~--g~~~~~~~~ 229 (231)
++.|++|.++|||||+++++|+|+|.+++||+ |+ .|.+..+|.||+|||||.|.. |.+++++..
T Consensus 322 e~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 322 EDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred HHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 99999999999999999999999999999997 65 588999999999999999864 899998865
No 56
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=1.9e-23 Score=192.02 Aligned_cols=185 Identities=16% Similarity=0.240 Sum_probs=128.4
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
.++++....+..+....++.|+|+||||++ .+.+.+.+.+.|. +.+... .
T Consensus 200 Ln~DfLLg~Lk~lL~~rpdlKvILmSATid--~e~fs~~F~~apv-I~V~Gr--~------------------------- 249 (1294)
T PRK11131 200 LNIDFILGYLKELLPRRPDLKVIITSATID--PERFSRHFNNAPI-IEVSGR--T------------------------- 249 (1294)
T ss_pred cccchHHHHHHHhhhcCCCceEEEeeCCCC--HHHHHHHcCCCCE-EEEcCc--c-------------------------
Confidence 344554432222222335789999999996 5677777766563 332200 0
Q ss_pred CcccccceeeecCC------CChHHHHHHHHH---hcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEc
Q psy9509 84 TPAELSEKLTTCST------NLKPLVLYQLIR---KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154 (231)
Q Consensus 84 ~~~~~~~~~~~~~~------~~k~~~l~~ll~---~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h 154 (231)
.| +...|..... ...+..+...+. ....+.+|||+++..+++.+++.|.... .....+..+|
T Consensus 250 ~p--Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~-------~~~~~VlpLh 320 (1294)
T PRK11131 250 YP--VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLN-------LRHTEILPLY 320 (1294)
T ss_pred cc--ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcC-------CCcceEeecc
Confidence 01 1222222211 112223333222 2345789999999999999999998751 0123478899
Q ss_pred CCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhccccc
Q psy9509 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTAR 216 (231)
Q Consensus 155 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR 216 (231)
|++++.+|.++++. .|..+|||||+++++|||+|+|++||++|. |.|.++|.||+||+||
T Consensus 321 g~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR 398 (1294)
T PRK11131 321 ARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGR 398 (1294)
T ss_pred cCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCC
Confidence 99999999999886 578899999999999999999999999863 3567899999999999
Q ss_pred CCCCceEEEEeecC
Q psy9509 217 GGRQGTSVTLVTTH 230 (231)
Q Consensus 217 ~g~~g~~~~~~~~~ 230 (231)
. ..|.|+.+++++
T Consensus 399 ~-~~G~c~rLyte~ 411 (1294)
T PRK11131 399 V-SEGICIRLYSED 411 (1294)
T ss_pred C-CCcEEEEeCCHH
Confidence 9 699999999864
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.90 E-value=4.7e-23 Score=185.39 Aligned_cols=119 Identities=24% Similarity=0.305 Sum_probs=95.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhcccccc-----------------CC------CCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATK-----------------GA------GTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~-----------------~~------~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
.++++||||+|+..|+.++..|......... .. ....++..+||++++.+|..+++.
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999988777543110000 00 012368999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEE-------ecCCC-CHHHHHHHhcccccCC--CCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVIN-------YEAPD-NIKKYIHRIGRTARGG--RQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~-------~~~p~-~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 230 (231)
|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++.++
T Consensus 317 F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 317 FREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 99999999999999999999999999984 45544 5679999999999976 579999988643
No 58
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.89 E-value=2.8e-23 Score=173.66 Aligned_cols=184 Identities=20% Similarity=0.281 Sum_probs=146.5
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFT 83 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (231)
+|.+-.-++. .++++.++-|+|.+|||+. +.+.+++.+.-.++.+.-
T Consensus 355 RG~RLdGLI~-RLr~l~~~AQ~i~LSATVg-Np~elA~~l~a~lV~y~~------------------------------- 401 (830)
T COG1202 355 RGPRLDGLIG-RLRYLFPGAQFIYLSATVG-NPEELAKKLGAKLVLYDE------------------------------- 401 (830)
T ss_pred cccchhhHHH-HHHHhCCCCeEEEEEeecC-ChHHHHHHhCCeeEeecC-------------------------------
Confidence 3444433333 3555666899999999997 778888876545544432
Q ss_pred CcccccceeeecC-CCChHHHHHHHHHhc--------CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEc
Q psy9509 84 TPAELSEKLTTCS-TNLKPLVLYQLIRKH--------AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154 (231)
Q Consensus 84 ~~~~~~~~~~~~~-~~~k~~~l~~ll~~~--------~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h 154 (231)
-|..+..++..+. ...|+..+..+.+.. -.+++|||++|+..|++++..|... |++...+|
T Consensus 402 RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k----------G~~a~pYH 471 (830)
T COG1202 402 RPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK----------GLKAAPYH 471 (830)
T ss_pred CCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC----------Cccccccc
Confidence 2555666777766 778999888887654 2368999999999999999999987 89999999
Q ss_pred CCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE---ecC-CCCHHHHHHHhcccccCC--CCceEEEEee
Q psy9509 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN---YEA-PDNIKKYIHRIGRTARGG--RQGTSVTLVT 228 (231)
Q Consensus 155 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~---~~~-p~~~~~~~qr~GR~gR~g--~~g~~~~~~~ 228 (231)
++++..+|..+..+|..+.+.++|+|-+++.|+|+|...+|+. .+. +-++..|.||.|||||.+ ..|.+|+++.
T Consensus 472 aGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllve 551 (830)
T COG1202 472 AGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVE 551 (830)
T ss_pred CCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEec
Confidence 9999999999999999999999999999999999997765432 232 458999999999999987 4699999887
Q ss_pred cC
Q psy9509 229 TH 230 (231)
Q Consensus 229 ~~ 230 (231)
|.
T Consensus 552 pg 553 (830)
T COG1202 552 PG 553 (830)
T ss_pred CC
Confidence 63
No 59
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=2e-22 Score=182.50 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC--Cc
Q psy9509 97 TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR--KI 174 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~--~~ 174 (231)
...|...|.++++...+.++||||+++..+..+++.|+.. .++.+..+||+|++.+|.++++.|+.+ ..
T Consensus 477 ~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~---------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~ 547 (956)
T PRK04914 477 FDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER---------EGIRAAVFHEGMSIIERDRAAAYFADEEDGA 547 (956)
T ss_pred cCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc---------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCc
Confidence 3558888999998887889999999999999999999543 178999999999999999999999984 69
Q ss_pred cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
+|||||+++++|+|++.+++||+||.|+++..|.||+||++|.|+++.+.+++.
T Consensus 548 ~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 548 QVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred cEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 999999999999999999999999999999999999999999999988766654
No 60
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.89 E-value=3.7e-22 Score=142.84 Aligned_cols=118 Identities=36% Similarity=0.600 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 99 LKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 99 ~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
.|...+.+++... .+.++||||++...++.+++.|.+. +..+..+||+++..+|..++++|+.+...+
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 81 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP----------GIKVAALHGDGSQEEREEVLKDFREGEIVV 81 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc----------CCcEEEEECCCCHHHHHHHHHHHHcCCCcE
Confidence 6888888888776 3789999999999999999999875 678999999999999999999999999999
Q ss_pred EEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 177 lv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
|++|+++++|+|+|.+++|+.++.|++...|.|++||++|.|+.|.++++
T Consensus 82 li~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 82 LVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999999999998887764
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=8.5e-23 Score=181.10 Aligned_cols=128 Identities=16% Similarity=0.231 Sum_probs=115.5
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.+++....|..++.+.+... .+.++||||+|++.++.++..|.+. ++.+..+||.+.+.++..+.+++
T Consensus 405 ~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~----------gi~~~~L~~~~~~~e~~~i~~ag 474 (790)
T PRK09200 405 KVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA----------GIPHNLLNAKNAAKEAQIIAEAG 474 (790)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCEEEecCCccHHHHHHHHHcC
Confidence 44556678999999988653 6789999999999999999999987 89999999999988888887777
Q ss_pred HcCCccEEEEcCccccccCc---CCCc-----EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDV---ENID-----VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi---~~v~-----~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.| .|+|||++++||+|+ |+|. +||+++.|.+...|.||+||+||.|..|.++.|++.+|
T Consensus 475 ~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 475 QKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 766 699999999999999 6998 99999999999999999999999999999999998765
No 62
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=177.65 Aligned_cols=184 Identities=24% Similarity=0.334 Sum_probs=131.8
Q ss_pred ccccCCCCCCcEEEEeeecCCChhhhhcccccC--CeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQ--PKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 14 ~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~--p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
..++.+..+.|.|.+|||+. +.+..+++.... +..|......... ++ +.-.|..-...
T Consensus 175 eRL~~l~~~~qRIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~-----------------~i--~v~~p~~~~~~ 234 (814)
T COG1201 175 ERLRELAGDFQRIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKL-----------------EI--KVISPVEDLIY 234 (814)
T ss_pred HHHHhhCcccEEEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcc-----------------eE--EEEecCCcccc
Confidence 34444444899999999998 777777775554 4443332111100 00 00000000000
Q ss_pred eeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
. -.....-+..+.++++++. .+|||+||+..+|.++..|.+.. ...+..+||+++.+.|..++++|++
T Consensus 235 ~-~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~---------~~~i~~HHgSlSre~R~~vE~~lk~ 302 (814)
T COG1201 235 D-EELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLG---------PDIIEVHHGSLSRELRLEVEERLKE 302 (814)
T ss_pred c-cchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhc---------CCceeeecccccHHHHHHHHHHHhc
Confidence 0 0011123344555555544 79999999999999999999872 3789999999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccC-CCCceEEEEeec
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG-GRQGTSVTLVTT 229 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~-g~~g~~~~~~~~ 229 (231)
|+.+++|||+.++.|||+.+++.|||++.|.+++.++||+||+|+. |....++++...
T Consensus 303 G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 303 GELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999999999999999999999999999999999999999999965 556777766543
No 63
>PRK01172 ski2-like helicase; Provisional
Probab=99.89 E-value=1.9e-22 Score=180.62 Aligned_cols=117 Identities=24% Similarity=0.236 Sum_probs=93.5
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccC---------------CCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKG---------------AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~---------------~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
.++++||||++++.|+.+++.|.+..+..... .....++..+||++++.+|..+++.|++|.++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 56789999999999999999997653211000 000135889999999999999999999999999
Q ss_pred EEEcCccccccCcCCCcEEEEecC---------CCCHHHHHHHhcccccCCC--CceEEEEeec
Q psy9509 177 VVASDNLARGIDVENIDVVINYEA---------PDNIKKYIHRIGRTARGGR--QGTSVTLVTT 229 (231)
Q Consensus 177 lv~T~~~~~Gidi~~v~~vi~~~~---------p~~~~~~~qr~GR~gR~g~--~g~~~~~~~~ 229 (231)
||||+++++|+|+|+..+|| .+. |.+..+|.||+|||||.|. .|.+++++..
T Consensus 315 LvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~ 377 (674)
T PRK01172 315 IVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAAS 377 (674)
T ss_pred EEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecC
Confidence 99999999999999865544 332 4688999999999999984 6778777653
No 64
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=3.6e-22 Score=184.20 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=122.5
Q ss_pred CCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecC--
Q psy9509 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCS-- 96 (231)
Q Consensus 19 ~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 96 (231)
..++.|+|+||||++ .+.+.+.+...|. +.+. ... .|. ...|....
T Consensus 208 ~rpdLKlIlmSATld--~~~fa~~F~~apv-I~V~---Gr~------------------------~PV--ev~Y~~~~~~ 255 (1283)
T TIGR01967 208 RRPDLKIIITSATID--PERFSRHFNNAPI-IEVS---GRT------------------------YPV--EVRYRPLVEE 255 (1283)
T ss_pred hCCCCeEEEEeCCcC--HHHHHHHhcCCCE-EEEC---CCc------------------------ccc--eeEEeccccc
Confidence 345789999999995 5677777765553 2221 000 011 11111111
Q ss_pred ----CCChHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 97 ----TNLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 97 ----~~~k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
...+...+...+.. ...+.+|||+++..+++.+++.|++... .+..+..+||++++.+|.++++.+
T Consensus 256 ~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~-------~~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 256 QEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNL-------RHTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred ccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCC-------CCcEEEeccCCCCHHHHHHHhCCC
Confidence 11233334333332 2457899999999999999999986511 145688999999999999986654
Q ss_pred HcCCccEEEEcCccccccCcCCCcEEEEecCC------------------CCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAP------------------DNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------------------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+..+|++||+++++|||+|+|.+||++|.+ .|.++|.||+||+||.+ .|.||.+++++
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~ 404 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEE 404 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHH
Confidence 347899999999999999999999999843 46789999999999997 99999999864
No 65
>KOG0352|consensus
Probab=99.87 E-value=1.6e-22 Score=163.96 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=148.2
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhh--cccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLH--QLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~--~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
+++++..++-+.-++..-++..-+.++||-++.+++.+ ++-+++|+-+--.
T Consensus 157 GHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--------------------------- 209 (641)
T KOG0352|consen 157 GHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--------------------------- 209 (641)
T ss_pred ccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC---------------------------
Confidence 46788888888888888889999999999999988744 4566788654421
Q ss_pred cccCcccccceeeec-CCCChHHHHHHH----HH------hc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCC
Q psy9509 81 KFTTPAELSEKLTTC-STNLKPLVLYQL----IR------KH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146 (231)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~k~~~l~~l----l~------~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~ 146 (231)
.....|+-....+- .-++-+..|.+. |- +. ..+..||||.|+++||+++=.|...
T Consensus 210 -P~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~---------- 278 (641)
T KOG0352|consen 210 -PTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIA---------- 278 (641)
T ss_pred -cchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhc----------
Confidence 11122221110000 001111111111 11 11 1246899999999999999999887
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 147 ~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
|+....+|.++...||..+.++|..+++.|++||..+++|+|-|+|++||||+.|.+...|.|..||+||.|...+|-++
T Consensus 279 Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 279 GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCC
Q psy9509 227 VTTHE 231 (231)
Q Consensus 227 ~~~~~ 231 (231)
|..+|
T Consensus 359 YsR~D 363 (641)
T KOG0352|consen 359 YSRQD 363 (641)
T ss_pred ecccc
Confidence 98664
No 66
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=9e-22 Score=173.16 Aligned_cols=194 Identities=19% Similarity=0.230 Sum_probs=142.9
Q ss_pred CCcEEEEeeecCCChhhhhc-ccccCCeEEeeeccC-CCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCC
Q psy9509 22 RPQRLLFSATLSHDPEKLHQ-LSLFQPKLFTSVVEP-AGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL 99 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~~~~-~~~~~p~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
.+..+++|||+..+-..... .++..|..+...+.. ...+...+..+.+.+++.+.++...+.....-.....+.....
T Consensus 401 a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~ 480 (732)
T TIGR00603 401 AHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPN 480 (732)
T ss_pred cCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChH
Confidence 45689999998643222222 133467776665522 2344556666666777777665555433322222333445567
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC-CccE
Q psy9509 100 KPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR-KIDL 176 (231)
Q Consensus 100 k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~-~~~v 176 (231)
|+..+..+++.+ .+.++||||++.+.++.++..|. +..+||++++.+|.+++++|+.| .+++
T Consensus 481 K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---------------~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 481 KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---------------KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---------------CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 888888888765 67899999999998888877662 24589999999999999999975 7899
Q ss_pred EEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCCCCceE-------EEEeecC
Q psy9509 177 VVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGGRQGTS-------VTLVTTH 230 (231)
Q Consensus 177 lv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~-------~~~~~~~ 230 (231)
||+|+++.+|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ |.+++++
T Consensus 546 Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 9999999999999999999999998 4999999999999999866554 6666654
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.87 E-value=8.6e-22 Score=173.44 Aligned_cols=128 Identities=16% Similarity=0.186 Sum_probs=114.2
Q ss_pred eeeecCCCChHHHHHHHHHh--cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRK--HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~--~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
...++....|..++.+.+.. ..+.++||||+|++.++.++..|.+. ++.+..+||.+.+.++..+.++
T Consensus 400 d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~----------gi~~~~L~a~~~~~E~~ii~~a 469 (762)
T TIGR03714 400 DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLRE----------GIPHNLLNAQNAAKEAQIIAEA 469 (762)
T ss_pred CeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCCChHHHHHHHHHc
Confidence 35566777899999998866 46789999999999999999999987 8999999999999888888777
Q ss_pred HHcCCccEEEEcCccccccCcC---------CCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVE---------NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~---------~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++.| .|+|||++++||+|+| ++.+|++++.|..... .||+||+||.|..|.++.|++.+|
T Consensus 470 g~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 470 GQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred CCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccch
Confidence 7666 6999999999999999 9999999999988766 999999999999999999999765
No 68
>KOG0329|consensus
Probab=99.87 E-value=3.5e-23 Score=157.62 Aligned_cols=152 Identities=28% Similarity=0.412 Sum_probs=131.9
Q ss_pred eeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccc
Q psy9509 9 LVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAEL 88 (231)
Q Consensus 9 ~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
.-...+|++.+|.+-|+++||||++.++.-..+++|.+|..|.+..+. .-+...+
T Consensus 204 rRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~-------------------------KLtLHGL 258 (387)
T KOG0329|consen 204 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA-------------------------KLTLHGL 258 (387)
T ss_pred HHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh-------------------------hhhhhhH
Confidence 344567899999999999999999999999999999999888775322 2356778
Q ss_pred cceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 89 SEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 89 ~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
+++|....+.+|...+.++|....-.+++||+.+.....
T Consensus 259 qQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~----------------------------------------- 297 (387)
T KOG0329|consen 259 QQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQRLS----------------------------------------- 297 (387)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhhhh-----------------------------------------
Confidence 999999999999999999999998889999999877511
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
| ..+ +|||++++||+|+..++.++|||.|.+..+|+||+||+||.|..|.++.|++.+
T Consensus 298 f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e 355 (387)
T KOG0329|consen 298 F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 355 (387)
T ss_pred h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcch
Confidence 1 012 899999999999999999999999999999999999999999999999998754
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=4.4e-21 Score=158.65 Aligned_cols=131 Identities=26% Similarity=0.361 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 98 NLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 98 ~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
.-|++.+..++++. .+.++|||++.++.++.+++.|.+..+... -...|-.......||+|.++.+++++|+.|.
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-eEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 44777777777554 567999999999999999999988722100 0000000111224799999999999999999
Q ss_pred ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 174 ~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.+|||||++++.|+|+|+++.||.|+.-.|..-++||.||+||. ..|.++++++..
T Consensus 426 ~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~g 481 (542)
T COG1111 426 YNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEG 481 (542)
T ss_pred ceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecC
Confidence 99999999999999999999999999999999999999999996 899999998864
No 70
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.86 E-value=2.5e-21 Score=167.64 Aligned_cols=122 Identities=18% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
..+.|...+.+++... .+.+++|||++.+.++.+++.|+.. +..+..+||+++..+|..+++.|+.|+
T Consensus 325 ~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~----------g~~v~~i~G~~~~~eR~~i~~~~~~~~ 394 (501)
T PHA02558 325 SHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV----------YDKVYYVSGEVDTEDRNEMKKIAEGGK 394 (501)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc----------CCCEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 3445566666555443 4578999999999999999999987 789999999999999999999999999
Q ss_pred ccEEEEc-CccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEe
Q psy9509 174 IDLVVAS-DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 174 ~~vlv~T-~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
..+|||| +++++|+|+|++++||+..++.+...|+||+||++|.+..+....++
T Consensus 395 ~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 395 GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999998 89999999999999999999999999999999999987654433333
No 71
>KOG0349|consensus
Probab=99.86 E-value=3.7e-21 Score=156.40 Aligned_cols=199 Identities=25% Similarity=0.356 Sum_probs=138.0
Q ss_pred CCCcEEEEeeecCC-ChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCccccc---------ccCcccccc
Q psy9509 21 SRPQRLLFSATLSH-DPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGK---------FTTPAELSE 90 (231)
Q Consensus 21 ~~~q~il~SATl~~-~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 90 (231)
...|.+++|||+.. ++..+.+..|+=|.++....+ ...++++-.+........+ ..+.. ....+++..
T Consensus 399 ~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge-D~vpetvHhvv~lv~p~~d-~sw~~lr~~i~td~vh~kdn~~p 476 (725)
T KOG0349|consen 399 FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE-DLVPETVHHVVKLVCPSVD-GSWCDLRQFIETDKVHTKDNLLP 476 (725)
T ss_pred cccccceeeeEEeEEEeeehhhhhccCceeEecccc-cccchhhccceeecCCccC-ccHHHHhhhhccCCccccccccc
Confidence 45799999999864 466677778888877765422 1111221111111111111 00000 001111100
Q ss_pred e-eeecCCC-----ChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH
Q psy9509 91 K-LTTCSTN-----LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164 (231)
Q Consensus 91 ~-~~~~~~~-----~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~ 164 (231)
- .+....+ .|-++-...++++...++||||.|+..|+.+.+++.+.-. ..+.+..+||+..+.||.+
T Consensus 477 g~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg-------~~~scvclhgDrkP~Erk~ 549 (725)
T KOG0349|consen 477 GQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG-------KHYSCVCLHGDRKPDERKA 549 (725)
T ss_pred ccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC-------ccceeEEEecCCChhHHHH
Confidence 0 0000000 1222223344556678999999999999999999988621 2578999999999999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
.++.|+.+.++.||||++++||+|+.++.++|+.-.|.+-..|.||+||.||..+-|.++.++-
T Consensus 550 nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 550 NLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred HHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEee
Confidence 9999999999999999999999999999999999999999999999999999999999988775
No 72
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.86 E-value=5.1e-21 Score=167.77 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=114.6
Q ss_pred eecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 93 TTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 93 ~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
++.....|+.++.+.+... .+.++||||+|++.++.+++.|.+. ++.+..+|+. +.+|+..+.+|+
T Consensus 383 i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~----------gi~~~~Lna~--q~~rEa~ii~~a 450 (745)
T TIGR00963 383 VYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER----------GIPHNVLNAK--NHEREAEIIAQA 450 (745)
T ss_pred EEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEEeeCC--hHHHHHHHHHhc
Confidence 3445566888887766433 7889999999999999999999987 8999999998 789999999999
Q ss_pred cCCccEEEEcCccccccCcCC-------CcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 171 RRKIDLVVASDNLARGIDVEN-------IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~-------v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+...|+|||++++||+|++. ..+||+++.|.|...|.|++||+||.|..|.+..|++.+|
T Consensus 451 g~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 451 GRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred CCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 999999999999999999998 5599999999999999999999999999999999998765
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.85 E-value=8.6e-21 Score=157.70 Aligned_cols=87 Identities=15% Similarity=0.299 Sum_probs=74.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.++++||||||+..++.+++.|++.. .+..+..+||.+++.+|.+. ++..|||||+++++|+|+|.
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~--------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG--------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC--------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCC
Confidence 56799999999999999999998741 13568889999999988654 47889999999999999998
Q ss_pred CcEEEEecCCCCHHHHHHHhcccc
Q psy9509 192 IDVVINYEAPDNIKKYIHRIGRTA 215 (231)
Q Consensus 192 v~~vi~~~~p~~~~~~~qr~GR~g 215 (231)
+ +|| ++ |.+.++|+||+||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 7 555 45 899999999999997
No 74
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.85 E-value=6.9e-21 Score=124.20 Aligned_cols=72 Identities=33% Similarity=0.619 Sum_probs=70.8
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCC
Q psy9509 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218 (231)
Q Consensus 147 ~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g 218 (231)
++.+..+||+++..+|..++++|+.+...|||||+++++|+|+|.+++|++++.|++...|.|++||++|.|
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999986
No 75
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=7.9e-21 Score=167.86 Aligned_cols=128 Identities=20% Similarity=0.240 Sum_probs=115.0
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
..+.....|..++.+.+... .+.++||||+|+..++.+++.|.+. ++.+..+|+.+.+.++..+.+++
T Consensus 417 ~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~----------gi~~~~Lna~~~~~Ea~ii~~ag 486 (796)
T PRK12906 417 LLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA----------GIPHAVLNAKNHAKEAEIIMNAG 486 (796)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeeEecCCcHHHHHHHHHhcC
Confidence 34555667888999888554 7889999999999999999999987 89999999999988888888887
Q ss_pred HcCCccEEEEcCccccccCcC---CCc-----EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVE---NID-----VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~---~v~-----~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.|. |+|||++++||+|++ +|. +||+++.|.+...|.|+.||+||.|..|.+..|++.+|
T Consensus 487 ~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 487 QRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 7777 999999999999994 888 99999999999999999999999999999999999775
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.84 E-value=2.3e-20 Score=160.11 Aligned_cols=188 Identities=18% Similarity=0.182 Sum_probs=138.5
Q ss_pred cCCcceeeeeccccCCCC-CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccc
Q psy9509 4 RGVGGLVIMWDTFLTYPS-RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~-~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
+.++|-+.....++.... .+..+.||||.-|....+.-.. | ..++.+.
T Consensus 392 EQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fg--D-ldvS~Id---------------------------- 440 (677)
T COG1200 392 EQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFG--D-LDVSIID---------------------------- 440 (677)
T ss_pred ccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhc--c-ccchhhc----------------------------
Confidence 446666666777777777 7999999999655555544432 1 1112221
Q ss_pred cCcccccceeeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHH--------HHHHHHHhhhccccccCCCCcccEEE
Q psy9509 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGA--------HRLARLLHHIDNVATKGAGTKMNIAE 152 (231)
Q Consensus 83 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~--------~~l~~~l~~~~~~~~~~~~~~~~~~~ 152 (231)
..|...+..-.++-...+...+++.+.+. .+.++.+.|+-.++. +.+++.|+..++ +..+..
T Consensus 441 ElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~--------~~~vgL 512 (677)
T COG1200 441 ELPPGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLP--------ELKVGL 512 (677)
T ss_pred cCCCCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcc--------cceeEE
Confidence 12333333323333334444455555443 788999999987664 466666665544 778999
Q ss_pred EcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 153 ~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+||.|+..++.+++++|++|+.+|||||.+++.|||+|+.++++..+.- ...++..|-.||.||.+.+++|++++.+.
T Consensus 513 ~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 513 VHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred EecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 9999999999999999999999999999999999999999998887754 57999999999999999999999999865
No 77
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=3.3e-20 Score=163.70 Aligned_cols=122 Identities=22% Similarity=0.306 Sum_probs=110.7
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..++..|.+.++.. .+.++||||+|+..++.+++.|.+. ++.+..+||++++.+|.+++++|+.|++.
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~ 494 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----------GIKVRYLHSEIDTLERVEIIRDLRLGEFD 494 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----------ccceeeeeCCCCHHHHHHHHHHHhcCCce
Confidence 45666777766553 6789999999999999999999987 88999999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEec-----CCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 176 LVVASDNLARGIDVENIDVVINYE-----APDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~-----~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|||||+.+++|+|+|++++|++++ .|.+..+|+||+||+||. ..|.+++|++..
T Consensus 495 VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~ 553 (655)
T TIGR00631 495 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKI 553 (655)
T ss_pred EEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCC
Confidence 999999999999999999999988 799999999999999998 689999988753
No 78
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=4.7e-20 Score=164.39 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=115.0
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|..++.+.+... .+.++||||+|++.++.+++.|... ++.+..+|+ .+.+|+..+.+|
T Consensus 575 ~vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~----------gI~h~vLna--kq~~REa~Iia~ 642 (1025)
T PRK12900 575 LVYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAK----------RIAHNVLNA--KQHDREAEIVAE 642 (1025)
T ss_pred eEecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHc----------CCCceeecC--CHHHhHHHHHHh
Confidence 44566677999999988655 7889999999999999999999988 899999997 678999999999
Q ss_pred HcCCccEEEEcCccccccCcC---CCc-----EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVE---NID-----VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~---~v~-----~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.+...|+|||++++||+||+ .|. +||....|.|...|.|++||+||.|..|.+..|++.+|
T Consensus 643 AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 643 AGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred cCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 999999999999999999999 443 45889999999999999999999999999999998765
No 79
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.82 E-value=2.4e-19 Score=159.02 Aligned_cols=121 Identities=25% Similarity=0.333 Sum_probs=109.2
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..+...|...+... .+.++||||+|+..++.+++.|... ++.+..+||++++.+|..+++.|+.|++.
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~----------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~ 498 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGEFD 498 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc----------ceeEEEEECCCCHHHHHHHHHHHHcCCce
Confidence 34566677666543 5789999999999999999999987 88999999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEecC-----CCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 176 LVVASDNLARGIDVENIDVVINYEA-----PDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
|+|||+.+++|+|+|++++|++++. |.+..+|+||+||+||. ..|.+++|++.
T Consensus 499 vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 499 VLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred EEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 9999999999999999999999875 78999999999999996 78999999873
No 80
>PRK13766 Hef nuclease; Provisional
Probab=99.82 E-value=3.5e-19 Score=162.10 Aligned_cols=122 Identities=21% Similarity=0.402 Sum_probs=109.2
Q ss_pred CCChHHHHHHHHHh----cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCC--------CCHHHHHH
Q psy9509 97 TNLKPLVLYQLIRK----HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD--------LKFDQRNK 164 (231)
Q Consensus 97 ~~~k~~~l~~ll~~----~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~--------~~~~~r~~ 164 (231)
...|+..|.++++. ..+.++||||+++..++.+++.|... ++.+..+||. +++.+|.+
T Consensus 345 ~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~----------~~~~~~~~g~~~~~~~~~~~~~~r~~ 414 (773)
T PRK13766 345 EHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE----------GIKAVRFVGQASKDGDKGMSQKEQIE 414 (773)
T ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC----------CCceEEEEccccccccCCCCHHHHHH
Confidence 35688888888866 46789999999999999999999765 6777788775 89999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
++++|+.|..++||||+++++|+|+|++++||+||.|++...|+||+||+||.|. |.+++++..
T Consensus 415 ~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~ 478 (773)
T PRK13766 415 ILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAK 478 (773)
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999864 778887764
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.81 E-value=9.8e-20 Score=169.12 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=115.4
Q ss_pred CCcEEEEeeecCCC-hhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCCh
Q psy9509 22 RPQRLLFSATLSHD-PEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLK 100 (231)
Q Consensus 22 ~~q~il~SATl~~~-~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 100 (231)
++|+++||||+++. +.. ..++++..+.+. .......++.+.+..+. .|
T Consensus 268 ~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~--------------------------~~~~~~rnI~~~yi~~~--~k 316 (1176)
T PRK09401 268 KGVLVVSSATGRPRGNRV---KLFRELLGFEVG--------------------------SPVFYLRNIVDSYIVDE--DS 316 (1176)
T ss_pred CceEEEEeCCCCccchHH---HHhhccceEEec--------------------------CcccccCCceEEEEEcc--cH
Confidence 78999999999865 332 122233223322 01123456777776655 67
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHH---HHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEE
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQG---AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vl 177 (231)
...|..+++... .++||||+++.. ++.+++.|+.. ++.+..+||++ .+.+++|++|+++||
T Consensus 317 ~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~----------gi~v~~~hg~l-----~~~l~~F~~G~~~VL 380 (1176)
T PRK09401 317 VEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDL----------GINAELAISGF-----ERKFEKFEEGEVDVL 380 (1176)
T ss_pred HHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHC----------CCcEEEEeCcH-----HHHHHHHHCCCCCEE
Confidence 778888887665 579999999877 99999999987 89999999999 234599999999999
Q ss_pred EE----cCccccccCcCC-CcEEEEecCCC------CHHHHHHHhccccc
Q psy9509 178 VA----SDNLARGIDVEN-IDVVINYEAPD------NIKKYIHRIGRTAR 216 (231)
Q Consensus 178 v~----T~~~~~Gidi~~-v~~vi~~~~p~------~~~~~~qr~GR~gR 216 (231)
|| |++++||||+|+ +++|||||.|. ....|.||+||+..
T Consensus 381 Vatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 381 VGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99 689999999999 89999999998 67889999999853
No 82
>KOG0353|consensus
Probab=99.80 E-value=1e-19 Score=146.00 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=150.1
Q ss_pred ccCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCe--EEeeeccCCCCCCCCCCCcccccCCCCCcccc
Q psy9509 3 RRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK--LFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80 (231)
Q Consensus 3 ~~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (231)
+++++..+..+.|+..--+..+++.++||-...+...++..+.-.. .++..
T Consensus 231 ghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--------------------------- 283 (695)
T KOG0353|consen 231 GHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--------------------------- 283 (695)
T ss_pred CcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc---------------------------
Confidence 4677778888888877667899999999999888887766543222 22221
Q ss_pred cccCcccccceeeecCCC--ChHHHHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC
Q psy9509 81 KFTTPAELSEKLTTCSTN--LKPLVLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL 157 (231)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~--~k~~~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 157 (231)
-...+++..+..-+.. +=.+-+.++++. ..+...||||-++..|+.++..|+.+ ++....+|..+
T Consensus 284 --fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~----------gi~a~~yha~l 351 (695)
T KOG0353|consen 284 --FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH----------GIHAGAYHANL 351 (695)
T ss_pred --cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc----------Ccccccccccc
Confidence 1234444444432221 123344455543 36788999999999999999999998 99999999999
Q ss_pred CHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHH----------------------------
Q psy9509 158 KFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH---------------------------- 209 (231)
Q Consensus 158 ~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~q---------------------------- 209 (231)
.+.+|...-+.|-.|+++|+|||-++++|||-|+|++|||...|.|.+.|.|
T Consensus 352 ep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinile 431 (695)
T KOG0353|consen 352 EPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILE 431 (695)
T ss_pred CccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhh
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred ---------------HhcccccCCCCceEEEEee
Q psy9509 210 ---------------RIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 210 ---------------r~GR~gR~g~~g~~~~~~~ 228 (231)
..||+||.+....|++++-
T Consensus 432 vctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 432 VCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred hhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 6799999999999999874
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.80 E-value=1.7e-18 Score=156.15 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=148.4
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
-+|-+.-.+.+..+..++-++-||||.-|.+..++-..+++-.+|.. .|
T Consensus 726 qRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T-------------------------------PP 774 (1139)
T COG1197 726 QRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT-------------------------------PP 774 (1139)
T ss_pred hhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC-------------------------------CC
Confidence 45666677788889999999999999777888888777777655553 23
Q ss_pred ccccceeeecCCCChHHHHHH-HHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQ-LIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~-ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
.+....-.++..... ..+.+ ++++. .++++.-.+|.++..+..++.|++..| ..++.+.||.|+..+-+
T Consensus 775 ~~R~pV~T~V~~~d~-~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--------EarI~vaHGQM~e~eLE 845 (1139)
T COG1197 775 EDRLPVKTFVSEYDD-LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--------EARIAVAHGQMRERELE 845 (1139)
T ss_pred CCCcceEEEEecCCh-HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--------ceEEEEeecCCCHHHHH
Confidence 332222222222222 22333 33444 678999999999999999999999877 78999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+++.+|.+|+.+|||||.+.+-|||+|++|.+|..+.. ...++..|..||.||....++||+++.+.
T Consensus 846 ~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 846 EVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred HHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 99999999999999999999999999999998876654 57999999999999999999999999864
No 84
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.79 E-value=1.5e-18 Score=154.95 Aligned_cols=182 Identities=21% Similarity=0.229 Sum_probs=124.9
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCC-
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL- 99 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 99 (231)
...|++.+|||+| +..+++.|.--++. ...+.+.+. ..+.-..+.+.......
T Consensus 179 ~~~rivgLSATlp-N~~evA~wL~a~~~--~~~~rp~~l-----------------------~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 179 ELIRIVGLSATLP-NAEEVADWLNAKLV--ESDWRPVPL-----------------------RRGVPYVGAFLGADGKKK 232 (766)
T ss_pred cceEEEEEeeecC-CHHHHHHHhCCccc--ccCCCCccc-----------------------ccCCccceEEEEecCccc
Confidence 3479999999998 88888888654443 222222221 11111222222222111
Q ss_pred -----h-HHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhh---------cccc---ccCCC---------------
Q psy9509 100 -----K-PLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHI---------DNVA---TKGAG--------------- 145 (231)
Q Consensus 100 -----k-~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~---------~~~~---~~~~~--------------- 145 (231)
+ ...+...+... .+++++|||+|+..+...++.+... .... +....
T Consensus 233 ~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~ 312 (766)
T COG1204 233 TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAEL 312 (766)
T ss_pred cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHH
Confidence 2 23333333333 6789999999999999999999841 0000 00000
Q ss_pred CcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec-----CCCCHHHHHHHhccccc
Q psy9509 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE-----APDNIKKYIHRIGRTAR 216 (231)
Q Consensus 146 ~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~-----~p~~~~~~~qr~GR~gR 216 (231)
...++..+|++++..+|..+.+.|+.|+++||+||+.++.|+|+|.-.+||- |+ .+.+..+++||.|||||
T Consensus 313 v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 313 VLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 1246889999999999999999999999999999999999999998777663 66 56678999999999999
Q ss_pred CCC--CceEEEEee
Q psy9509 217 GGR--QGTSVTLVT 228 (231)
Q Consensus 217 ~g~--~g~~~~~~~ 228 (231)
.|- .|.++++.+
T Consensus 393 Pg~d~~G~~~i~~~ 406 (766)
T COG1204 393 PGYDDYGEAIILAT 406 (766)
T ss_pred CCcCCCCcEEEEec
Confidence 984 577777663
No 85
>PRK14701 reverse gyrase; Provisional
Probab=99.79 E-value=7.4e-19 Score=166.77 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=121.5
Q ss_pred CCCCCc-EEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCC
Q psy9509 19 YPSRPQ-RLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCST 97 (231)
Q Consensus 19 ~~~~~q-~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (231)
++..+| ++++|||+++.-. .. ..++++..+.+... .....++.+.+..+..
T Consensus 265 ~~~~~~~ll~~SAT~~~r~~-~~-~l~~~~l~f~v~~~--------------------------~~~lr~i~~~yi~~~~ 316 (1638)
T PRK14701 265 IGNKIGCLIVASATGKAKGD-RV-KLYRELLGFEVGSG--------------------------RSALRNIVDVYLNPEK 316 (1638)
T ss_pred cCCCccEEEEEecCCCchhH-HH-HHhhcCeEEEecCC--------------------------CCCCCCcEEEEEECCH
Confidence 455666 6779999985311 11 23355555544311 1234567777776655
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcchHH---HHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQG---AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..| ..|..+++.. +.++||||+|++. |+++++.|+.. ++.+..+||+ |...+++|++|+.
T Consensus 317 ~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~----------Gi~a~~~h~~-----R~~~l~~F~~G~~ 379 (1638)
T PRK14701 317 IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED----------GFKIELVSAK-----NKKGFDLFEEGEI 379 (1638)
T ss_pred HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC----------CCeEEEecch-----HHHHHHHHHcCCC
Confidence 545 5677887766 4689999999875 58999999987 8999999995 8899999999999
Q ss_pred cEEEEc----CccccccCcCC-CcEEEEecCCC---CHHHHHHHh-------------cccccCCCCceE
Q psy9509 175 DLVVAS----DNLARGIDVEN-IDVVINYEAPD---NIKKYIHRI-------------GRTARGGRQGTS 223 (231)
Q Consensus 175 ~vlv~T----~~~~~Gidi~~-v~~vi~~~~p~---~~~~~~qr~-------------GR~gR~g~~g~~ 223 (231)
+||||| ++++||||+|+ |++|||+|.|. +...|.|.. ||+||.|....+
T Consensus 380 ~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 380 DYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred CEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 999999 48999999999 99999999998 777776655 999999866544
No 86
>KOG0354|consensus
Probab=99.77 E-value=3.9e-18 Score=148.40 Aligned_cols=127 Identities=24% Similarity=0.421 Sum_probs=102.6
Q ss_pred CCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE----cCCCCHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV----YSDLKFDQRNKIIQE 168 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----h~~~~~~~r~~~~~~ 168 (231)
...|++.+.+.+.+. ...++||||.+++.|..+..+|.+.... +....+.+..- ..+|++.++.+++++
T Consensus 393 ~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~---~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~ 469 (746)
T KOG0354|consen 393 ENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL---GIKAEIFIGQGKSTQSTGMTQKEQKEVLDK 469 (746)
T ss_pred cChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc---ccccceeeeccccccccccCHHHHHHHHHH
Confidence 356888888877654 5679999999999999999999852111 00111112111 248999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
|+.|+++|||||+++++|+|++.|+.||-||...++...+||.|| ||. ..|+++++.+
T Consensus 470 Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 470 FRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred HhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 999999999999999999999999999999999999999999999 997 5777777765
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.77 E-value=1.9e-17 Score=149.61 Aligned_cols=107 Identities=24% Similarity=0.442 Sum_probs=86.0
Q ss_pred HHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH----HHHHHH-HcCC---
Q psy9509 103 VLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN----KIIQEF-RRRK--- 173 (231)
Q Consensus 103 ~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~----~~~~~f-~~~~--- 173 (231)
.+..+++. ..+++++|||||++.|+++++.|++..+ ....+..+||.++..+|. ++++.| ++|+
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~ 621 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQ 621 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC-------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCC
Confidence 33344443 3677899999999999999999987521 135789999999999884 567778 5665
Q ss_pred ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCC
Q psy9509 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 174 ~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
..|||||+++++|+|+ +++++|....| .++++||+||++|.+.
T Consensus 622 ~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 622 GRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 3699999999999999 57888887777 6899999999999875
No 88
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.75 E-value=7.8e-18 Score=110.38 Aligned_cols=81 Identities=37% Similarity=0.685 Sum_probs=75.1
Q ss_pred HHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHH
Q psy9509 128 RLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207 (231)
Q Consensus 128 ~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~ 207 (231)
.+++.|+.. ++.+..+||+++..+|..+++.|+.+...+|++|++++.|+|+|.+++|+.++.|++...|
T Consensus 2 ~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~ 71 (82)
T smart00490 2 ELAELLKEL----------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASY 71 (82)
T ss_pred HHHHHHHHC----------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHH
Confidence 355666655 7889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccCC
Q psy9509 208 IHRIGRTARGG 218 (231)
Q Consensus 208 ~qr~GR~gR~g 218 (231)
.|++||++|.|
T Consensus 72 ~Q~~gR~~R~g 82 (82)
T smart00490 72 IQRIGRAGRAG 82 (82)
T ss_pred HHhhcccccCC
Confidence 99999999975
No 89
>KOG0947|consensus
Probab=99.75 E-value=5.9e-17 Score=142.44 Aligned_cols=128 Identities=22% Similarity=0.255 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc-----------------ccCC------------CCcccEE
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA-----------------TKGA------------GTKMNIA 151 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~-----------------~~~~------------~~~~~~~ 151 (231)
+..+...|+....-|+||||=++..|++.+..|....-.+ +.+. ....+++
T Consensus 555 ~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGia 634 (1248)
T KOG0947|consen 555 WLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIA 634 (1248)
T ss_pred HHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcch
Confidence 5566677777777899999999999999999996641110 0000 0114688
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC--------CCHHHHHHHhcccccCC--CCc
Q psy9509 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP--------DNIKKYIHRIGRTARGG--RQG 221 (231)
Q Consensus 152 ~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p--------~~~~~~~qr~GR~gR~g--~~g 221 (231)
++||++-+-.++-++.-|+.|-++||+||..+++|+|+|.-.+|+.-=.- -.+-.|.||+|||||.| ..|
T Consensus 635 VHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tG 714 (1248)
T KOG0947|consen 635 VHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETG 714 (1248)
T ss_pred hhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCc
Confidence 99999999999999999999999999999999999999988777752111 25789999999999999 467
Q ss_pred eEEEEee
Q psy9509 222 TSVTLVT 228 (231)
Q Consensus 222 ~~~~~~~ 228 (231)
.++++..
T Consensus 715 TVii~~~ 721 (1248)
T KOG0947|consen 715 TVIIMCK 721 (1248)
T ss_pred eEEEEec
Confidence 7777664
No 90
>KOG0950|consensus
Probab=99.74 E-value=5.1e-18 Score=149.31 Aligned_cols=130 Identities=23% Similarity=0.289 Sum_probs=101.4
Q ss_pred HHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccC----------------------------CCCcccEE
Q psy9509 102 LVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKG----------------------------AGTKMNIA 151 (231)
Q Consensus 102 ~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~----------------------------~~~~~~~~ 151 (231)
+.+..+..+. ++.++||||+++..|+.++..+....+..... ....++++
T Consensus 447 D~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvA 526 (1008)
T KOG0950|consen 447 DHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVA 526 (1008)
T ss_pred cceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccce
Confidence 3444444333 45679999999999999997775542221110 01126799
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecC----CCCHHHHHHHhcccccCC--CCceEEE
Q psy9509 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA----PDNIKKYIHRIGRTARGG--RQGTSVT 225 (231)
Q Consensus 152 ~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~----p~~~~~~~qr~GR~gR~g--~~g~~~~ 225 (231)
++|++++.++|+.+...|+.|.+.|++||+.++.|+|+|..++++-... +-+..+|.||+|||||.| ..|.+++
T Consensus 527 yHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiL 606 (1008)
T KOG0950|consen 527 YHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSIL 606 (1008)
T ss_pred ecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEE
Confidence 9999999999999999999999999999999999999999988875332 247889999999999997 4688999
Q ss_pred EeecCC
Q psy9509 226 LVTTHE 231 (231)
Q Consensus 226 ~~~~~~ 231 (231)
++.+.|
T Consensus 607 I~k~~e 612 (1008)
T KOG0950|consen 607 IIKSSE 612 (1008)
T ss_pred Eeeccc
Confidence 887653
No 91
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=149.87 Aligned_cols=187 Identities=19% Similarity=0.202 Sum_probs=135.1
Q ss_pred eeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 12 ~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
+++++...++++|+|++|||+. +...++..+...+....+. ....+...++.
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~-np~e~~~~l~~~~f~~~v~---------------------------~~g~~~~~~~~ 273 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLA-NPGEFAEELFGRDFEVPVD---------------------------EDGSPRGLRYF 273 (851)
T ss_pred HHHHHhccCCCceEEEEecccc-ChHHHHHHhcCCcceeecc---------------------------CCCCCCCceEE
Confidence 3446666778999999999998 5555555544433332211 11123333333
Q ss_pred eeecC---------CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 92 LTTCS---------TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 92 ~~~~~---------~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
+.+-+ ...+...+..+.... .+-++|+|+.++..++.++...+....... ......+..+++++...
T Consensus 274 ~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--~~l~~~v~~~~~~~~~~ 351 (851)
T COG1205 274 VRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG--GKLLDAVSTYRAGLHRE 351 (851)
T ss_pred EEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc--hhhhhheeeccccCCHH
Confidence 33333 224444444444333 677999999999999999855544422111 12246789999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEee
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD-NIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
+|.+++.+|+.|+..++++|++++.|+|+.+++.||..+.|. +..+|.||+||+||.++.+..+++..
T Consensus 352 er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 352 ERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred HHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999999999999999999 89999999999999997776666554
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.71 E-value=1.9e-16 Score=136.81 Aligned_cols=93 Identities=20% Similarity=0.353 Sum_probs=79.0
Q ss_pred HHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH--HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecC---
Q psy9509 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR--NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA--- 200 (231)
Q Consensus 126 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r--~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~--- 200 (231)
++++++.|++.++ +.++..+|++++..++ ++++++|++|+.+|||+|+++++|+|+|++++|+.++.
T Consensus 271 te~~~e~l~~~fp--------~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~ 342 (505)
T TIGR00595 271 TEQVEEELAKLFP--------GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSG 342 (505)
T ss_pred HHHHHHHHHhhCC--------CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCccc
Confidence 5888888887765 7889999999987766 89999999999999999999999999999999864443
Q ss_pred ---CC------CHHHHHHHhcccccCCCCceEEEE
Q psy9509 201 ---PD------NIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 201 ---p~------~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
|. ....|+|++||+||.+..|.+++.
T Consensus 343 l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 343 LHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 32 256789999999999989988853
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.71 E-value=1.1e-16 Score=149.14 Aligned_cols=102 Identities=16% Similarity=0.300 Sum_probs=85.6
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcch---HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTA---QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
...++.+.+..+.. +...|.++++... .++||||+++ +.|+++++.|++. ++.+..+||+++
T Consensus 300 ~~r~I~~~~~~~~~--~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~----------g~~a~~lhg~~~-- 364 (1171)
T TIGR01054 300 TLRNVVDVYVEDED--LKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENH----------GVKAVAYHATKP-- 364 (1171)
T ss_pred cccceEEEEEeccc--HHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhC----------CceEEEEeCCCC--
Confidence 34566676654432 3456777776653 5799999999 9999999999887 899999999997
Q ss_pred HHHHHHHHHHcCCccEEEE----cCccccccCcCC-CcEEEEecCCC
Q psy9509 161 QRNKIIQEFRRRKIDLVVA----SDNLARGIDVEN-IDVVINYEAPD 202 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~----T~~~~~Gidi~~-v~~vi~~~~p~ 202 (231)
.+++++|++|+++|||| |++++||||+|+ |++||+||.|.
T Consensus 365 --~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 --KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 37899999999999999 589999999999 89999999995
No 94
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.71 E-value=3.2e-16 Score=124.39 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=95.1
Q ss_pred HHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 103 VLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 103 ~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
.|..++++. .+.+++||+++.+..+++++.|++.++ ...++.+|+... .|.+..++|++|+..+||+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~--------~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTT 362 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLP--------KETIASVHSEDQ--HRKEKVEAFRDGKITLLITT 362 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCC--------ccceeeeeccCc--cHHHHHHHHHcCceEEEEEe
Confidence 677777665 578999999999999999999977654 567789999654 78999999999999999999
Q ss_pred CccccccCcCCCcEEEEecC--CCCHHHHHHHhcccccCCC--CceEEEE
Q psy9509 181 DNLARGIDVENIDVVINYEA--PDNIKKYIHRIGRTARGGR--QGTSVTL 226 (231)
Q Consensus 181 ~~~~~Gidi~~v~~vi~~~~--p~~~~~~~qr~GR~gR~g~--~g~~~~~ 226 (231)
.+++||+.+|+|++.+.-.- -.+.++.+|.+||+||.-. .|.++.|
T Consensus 363 TILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 363 TILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred ehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 99999999999998654322 2688999999999999854 5666555
No 95
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.70 E-value=9.1e-16 Score=128.10 Aligned_cols=122 Identities=25% Similarity=0.344 Sum_probs=107.2
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
+....++-|+.-++.. .+.+++|-+-|++.||.++++|.+. |+++.++|++...-+|.+++++++.|.
T Consensus 427 p~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~----------gikv~YlHSdidTlER~eIirdLR~G~ 496 (663)
T COG0556 427 PTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL----------GIKVRYLHSDIDTLERVEIIRDLRLGE 496 (663)
T ss_pred cCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc----------CceEEeeeccchHHHHHHHHHHHhcCC
Confidence 3344455555545432 6789999999999999999999998 999999999999999999999999999
Q ss_pred ccEEEEcCccccccCcCCCcEEEEecCC-----CCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 174 IDLVVASDNLARGIDVENIDVVINYEAP-----DNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 174 ~~vlv~T~~~~~Gidi~~v~~vi~~~~p-----~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
.+|||.-+.+..|+|+|.|..|..+|.. .|..+.+|-+|||+|. -.|.++++.+
T Consensus 497 ~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD 555 (663)
T COG0556 497 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYAD 555 (663)
T ss_pred ccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhc-cCCeEEEEch
Confidence 9999999999999999999999988764 6899999999999995 6899998865
No 96
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.68 E-value=3.7e-16 Score=140.65 Aligned_cols=104 Identities=26% Similarity=0.357 Sum_probs=88.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH----cCCccEEEEcCcccccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR----RRKIDLVVASDNLARGI 187 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~----~~~~~vlv~T~~~~~Gi 187 (231)
.+++++|.|||+..|.++|+.|+.. +..+..+||.+...+|.+.++.+. .+...|+|||++.+.|+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~----------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagv 508 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEK----------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGV 508 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhc----------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEe
Confidence 6789999999999999999999986 336999999999999998888665 46778999999999999
Q ss_pred CcCCCcEEEEecCCCCHHHHHHHhcccccCC--CCceEEEEee
Q psy9509 188 DVENIDVVINYEAPDNIKKYIHRIGRTARGG--RQGTSVTLVT 228 (231)
Q Consensus 188 di~~v~~vi~~~~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~ 228 (231)
|+. .+.+| --+....+.+||+||++|.| ..|.++++..
T Consensus 509 Did-fd~mI--Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 509 DID-FDVLI--TELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred ccc-cCeee--ecCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 984 55544 45677899999999999999 5677777654
No 97
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=4e-16 Score=138.85 Aligned_cols=128 Identities=20% Similarity=0.160 Sum_probs=114.4
Q ss_pred eeecCCCChHHHHHHHHHh--cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRK--HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~--~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|..++.+.+.. ..+.|+||||+|++.++.+++.|.+. ++.+..+|+. +.+|+..+.+|
T Consensus 407 ~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~----------gi~~~vLnak--q~eREa~Iia~ 474 (830)
T PRK12904 407 LIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA----------GIPHNVLNAK--NHEREAEIIAQ 474 (830)
T ss_pred eEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----------CCceEeccCc--hHHHHHHHHHh
Confidence 4455667799999998866 57889999999999999999999987 8999999995 77999999999
Q ss_pred HcCCccEEEEcCccccccCcCCC--------------------------------------cEEEEecCCCCHHHHHHHh
Q psy9509 170 RRRKIDLVVASDNLARGIDVENI--------------------------------------DVVINYEAPDNIKKYIHRI 211 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~v--------------------------------------~~vi~~~~p~~~~~~~qr~ 211 (231)
+.+...|+|||++++||+|++-- =+||-...|.|..---|-.
T Consensus 475 Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~Qlr 554 (830)
T PRK12904 475 AGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLR 554 (830)
T ss_pred cCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhh
Confidence 99999999999999999999743 3688888899999999999
Q ss_pred cccccCCCCceEEEEeecCC
Q psy9509 212 GRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 212 GR~gR~g~~g~~~~~~~~~~ 231 (231)
||+||.|..|.+-.|++-+|
T Consensus 555 GRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 555 GRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cccccCCCCCceeEEEEcCc
Confidence 99999999999999998665
No 98
>KOG0948|consensus
Probab=99.67 E-value=3.9e-16 Score=134.45 Aligned_cols=130 Identities=17% Similarity=0.264 Sum_probs=100.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhc-cccccC----------------------------CCCcccE
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID-NVATKG----------------------------AGTKMNI 150 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~-~~~~~~----------------------------~~~~~~~ 150 (231)
.+..+.+.+-.....++|||+=++++||.+|-.+.+.+ +.+-+. +...-++
T Consensus 370 ~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGI 449 (1041)
T KOG0948|consen 370 DIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGI 449 (1041)
T ss_pred cHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcc
Confidence 33445554444466789999999999999998887652 211000 0011368
Q ss_pred EEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ecCC----CCHHHHHHHhcccccCC--CC
Q psy9509 151 AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YEAP----DNIKKYIHRIGRTARGG--RQ 220 (231)
Q Consensus 151 ~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~~p----~~~~~~~qr~GR~gR~g--~~ 220 (231)
..+|||+-+--++-++--|+.|-+++|+||..++.|+|+|.-++|+- ||-- -|.-.|+||.|||||.| ..
T Consensus 450 GIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~Ddr 529 (1041)
T KOG0948|consen 450 GIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDR 529 (1041)
T ss_pred ccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCC
Confidence 88999999999999999999999999999999999999998887764 3321 36788999999999998 46
Q ss_pred ceEEEEeec
Q psy9509 221 GTSVTLVTT 229 (231)
Q Consensus 221 g~~~~~~~~ 229 (231)
|.|++++++
T Consensus 530 GivIlmiDe 538 (1041)
T KOG0948|consen 530 GIVILMIDE 538 (1041)
T ss_pred ceEEEEecC
Confidence 888888875
No 99
>KOG0922|consensus
Probab=99.67 E-value=3.9e-16 Score=133.28 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=131.0
Q ss_pred ccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeec
Q psy9509 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95 (231)
Q Consensus 16 ~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (231)
+..-+++-.+|+||||+ +.+++.+.|..-|...... . ..|.. ..|...
T Consensus 189 i~~~R~~LklIimSATl--da~kfS~yF~~a~i~~i~G----R------------------------~fPVe--i~y~~~ 236 (674)
T KOG0922|consen 189 ILKKRPDLKLIIMSATL--DAEKFSEYFNNAPILTIPG----R------------------------TFPVE--ILYLKE 236 (674)
T ss_pred HHhcCCCceEEEEeeee--cHHHHHHHhcCCceEeecC----C------------------------CCcee--EEeccC
Confidence 34445678999999999 5778888776544332210 0 11111 122222
Q ss_pred CCCC----hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 96 STNL----KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 96 ~~~~----k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+..+ -+..+.++-...+++-+|||....++++.+++.|.+.......... ..+..+||.++.+++.++++.-..
T Consensus 237 p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~--~~~lply~aL~~e~Q~rvF~p~p~ 314 (674)
T KOG0922|consen 237 PTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCP--ELILPLYGALPSEEQSRVFDPAPP 314 (674)
T ss_pred CchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCc--ceeeeecccCCHHHhhccccCCCC
Confidence 2222 1233444444456778999999999999999999887332222211 157789999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|..+|++||++++..+.+|++.+||+-+. |.|-++-.||.|||||.| .|.|+-+|++++
T Consensus 315 g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~ 391 (674)
T KOG0922|consen 315 GKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESA 391 (674)
T ss_pred CcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHH
Confidence 99999999999999999999999998655 458899999999999974 899999998653
No 100
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.67 E-value=2.1e-15 Score=134.65 Aligned_cols=95 Identities=21% Similarity=0.341 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH--HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC-
Q psy9509 125 GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF--DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP- 201 (231)
Q Consensus 125 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~--~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p- 201 (231)
.++++++.|++.++ +.++..+|+++.+ .++++++++|++|+.+|||+|+++++|+|+|++++|+.++..
T Consensus 438 G~e~~~e~l~~~fp--------~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~ 509 (679)
T PRK05580 438 GTERLEEELAELFP--------EARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADL 509 (679)
T ss_pred cHHHHHHHHHHhCC--------CCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCch
Confidence 45677777777655 6789999999864 578999999999999999999999999999999998665543
Q ss_pred -C----------CHHHHHHHhcccccCCCCceEEEEe
Q psy9509 202 -D----------NIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 202 -~----------~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
- ....|+|++||+||.+..|.+++..
T Consensus 510 ~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 510 GLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred hccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 2 2367999999999999899998654
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.7e-16 Score=137.77 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=113.9
Q ss_pred eeeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
..++.....|+.++.+.+... .+.|+||||+|++.++.+++.|.+. ++.+..+|+.+.+.++..+.++
T Consensus 420 d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~----------gi~h~vLnak~~q~Ea~iia~A 489 (896)
T PRK13104 420 DLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKE----------NIKHQVLNAKFHEKEAQIIAEA 489 (896)
T ss_pred CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc----------CCCeEeecCCCChHHHHHHHhC
Confidence 345666778888888877543 7889999999999999999999998 9999999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCC--------------------------------------CcEEEEecCCCCHHHHHHH
Q psy9509 169 FRRRKIDLVVASDNLARGIDVEN--------------------------------------IDVVINYEAPDNIKKYIHR 210 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~--------------------------------------v~~vi~~~~p~~~~~~~qr 210 (231)
|+.|. |+|||++++||+|+.- -=+||-...+.|..---|-
T Consensus 490 g~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QL 567 (896)
T PRK13104 490 GRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQL 567 (896)
T ss_pred CCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHh
Confidence 99995 9999999999999852 1268888889999999999
Q ss_pred hcccccCCCCceEEEEeecCC
Q psy9509 211 IGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 211 ~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.||+||.|..|.+-.|++-+|
T Consensus 568 rGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 568 RGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred ccccccCCCCCceEEEEEcCc
Confidence 999999999999999998665
No 102
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.66 E-value=1.4e-15 Score=129.78 Aligned_cols=110 Identities=24% Similarity=0.404 Sum_probs=99.7
Q ss_pred CCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 97 TNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
.+.+...+..++..+ .+.+++||+.+...++.++..+... +. +..+.+..+..+|.++++.|+.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~----------~~-~~~it~~t~~~eR~~il~~fr~g~~~ 334 (442)
T COG1061 266 SERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP----------GI-VEAITGETPKEEREAILERFRTGGIK 334 (442)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC----------Cc-eEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 455666777777666 4779999999999999999999765 45 88999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
+|+++.++..|+|+|+++++|......|...|+||+||.-|.
T Consensus 335 ~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 335 VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999993
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.66 E-value=4.9e-16 Score=138.93 Aligned_cols=178 Identities=19% Similarity=0.227 Sum_probs=130.1
Q ss_pred ccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceee
Q psy9509 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLT 93 (231)
Q Consensus 14 ~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
+++...+++-.+|+||||+ +.+++...+-.-|.... . + -..|..+.+.-.
T Consensus 187 ~~~~~rr~DLKiIimSATl--d~~rfs~~f~~apvi~i-~----G-----------------------R~fPVei~Y~~~ 236 (845)
T COG1643 187 DLLARRRDDLKLIIMSATL--DAERFSAYFGNAPVIEI-E----G-----------------------RTYPVEIRYLPE 236 (845)
T ss_pred HHHhhcCCCceEEEEeccc--CHHHHHHHcCCCCEEEe-c----C-----------------------CccceEEEecCC
Confidence 3455666679999999999 57888887755443322 1 0 011222211111
Q ss_pred ecCCCC-hHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhh-hccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 94 TCSTNL-KPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHH-IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 94 ~~~~~~-k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
..... =..++...+.. ...+.+|||.+-.++.+..++.|.+ .+. ....+..+||.++..++.++++.
T Consensus 237 -~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~-------~~~~i~PLy~~L~~~eQ~rvF~p 308 (845)
T COG1643 237 -AEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELG-------DDLEILPLYGALSAEEQVRVFEP 308 (845)
T ss_pred -CCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhcccc-------CCcEEeeccccCCHHHHHhhcCC
Confidence 11111 12233333333 3567899999999999999999987 211 25789999999999999999888
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
-..|+.+|++||++++-+|.||++.+||+-+. |.|-++..||.|||||- ..|.||-+++++
T Consensus 309 ~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~ 387 (845)
T COG1643 309 APGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEE 387 (845)
T ss_pred CCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHH
Confidence 88888889999999999999999999998665 45889999999999997 489999988753
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.4e-15 Score=135.46 Aligned_cols=128 Identities=19% Similarity=0.174 Sum_probs=113.1
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|+.++.+-+... .+.++||||+|++.++.++..|... ++.+..+|+..++.++..+.++|
T Consensus 426 ~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~----------gi~~~vLnak~~~~Ea~ii~~Ag 495 (908)
T PRK13107 426 LVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKE----------KIPHEVLNAKFHEREAEIVAQAG 495 (908)
T ss_pred cEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCeEeccCcccHHHHHHHHhCC
Confidence 34555677888888777543 7889999999999999999999987 89999999999999999999999
Q ss_pred HcCCccEEEEcCccccccCcCC-------------------------------------CcEEEEecCCCCHHHHHHHhc
Q psy9509 170 RRRKIDLVVASDNLARGIDVEN-------------------------------------IDVVINYEAPDNIKKYIHRIG 212 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~-------------------------------------v~~vi~~~~p~~~~~~~qr~G 212 (231)
+.|. |+|||++++||+|+.- -=+||-...+.|..---|-.|
T Consensus 496 ~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrG 573 (908)
T PRK13107 496 RTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRG 573 (908)
T ss_pred CCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhc
Confidence 9999 9999999999999852 236888888999999999999
Q ss_pred ccccCCCCceEEEEeecCC
Q psy9509 213 RTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 213 R~gR~g~~g~~~~~~~~~~ 231 (231)
|+||.|..|.+-.|++-+|
T Consensus 574 RaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 574 RAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred ccccCCCCCceeEEEEeCc
Confidence 9999999999999998665
No 105
>KOG4150|consensus
Probab=99.63 E-value=3.4e-15 Score=125.69 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=130.2
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCe-EEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecC---
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPK-LFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCS--- 96 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (231)
.+-|++-+|||+-+.++...+.+..+.. .+..... |..-++.+.+-+
T Consensus 450 ~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGS-----------------------------Ps~~K~~V~WNP~~~ 500 (1034)
T KOG4150|consen 450 INMGVYDGDTPYKDRTRLRSELANLSELELVTIDGS-----------------------------PSSEKLFVLWNPSAP 500 (1034)
T ss_pred cCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCC-----------------------------CCccceEEEeCCCCC
Confidence 4679999999998777766665444443 3333322 333334443322
Q ss_pred ------CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 97 ------TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 97 ------~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
.+.++.-..+++-+. .+-++|.||.+++.|+.+....++.+...+. ..-..+..+.|+.+..+|.+++.+
T Consensus 501 P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--~LV~~i~SYRGGY~A~DRRKIE~~ 578 (1034)
T KOG4150|consen 501 PTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAP--HLVEAITSYRGGYIAEDRRKIESD 578 (1034)
T ss_pred CcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhH--HHHHHHHhhcCccchhhHHHHHHH
Confidence 223333333344332 5679999999999999998888776432211 112346678899999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
+-.|+..-+|||++++.|||+...+.|+++++|-|.+.+.|+.||+||......++.+..
T Consensus 579 ~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~ 638 (1034)
T KOG4150|consen 579 LFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAF 638 (1034)
T ss_pred hhCCeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEe
Confidence 999999999999999999999999999999999999999999999999988877776654
No 106
>KOG0952|consensus
Probab=99.61 E-value=8.1e-15 Score=130.38 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=122.2
Q ss_pred CCCCCCcEEEEeeecCCChhhhhcccccCCeE--EeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeec
Q psy9509 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKL--FTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTC 95 (231)
Q Consensus 18 ~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (231)
...+..+++.+|||+| +.++++.++--+|.. +.... ..-|..+.+.+.-.
T Consensus 271 ssqs~IRivgLSATlP-N~eDvA~fL~vn~~~glfsFd~---------------------------~yRPvpL~~~~iG~ 322 (1230)
T KOG0952|consen 271 SSQSMIRIVGLSATLP-NYEDVARFLRVNPYAGLFSFDQ---------------------------RYRPVPLTQGFIGI 322 (1230)
T ss_pred hhhhheEEEEeeccCC-CHHHHHHHhcCCCccceeeecc---------------------------cccccceeeeEEee
Confidence 3455679999999998 888888886555431 11110 11122222222211
Q ss_pred CC-----------CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc------ccCCCCc-------ccEE
Q psy9509 96 ST-----------NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA------TKGAGTK-------MNIA 151 (231)
Q Consensus 96 ~~-----------~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~------~~~~~~~-------~~~~ 151 (231)
.. +...+.+.+.+ ..+.+++|||+++.++.+.|+.|.+.-... ....... .+..
T Consensus 323 k~~~~~~~~~~~d~~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~ 400 (1230)
T KOG0952|consen 323 KGKKNRQQKKNIDEVCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMG 400 (1230)
T ss_pred ecccchhhhhhHHHHHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhh
Confidence 11 11222222222 267899999999999999999997751111 1111112 5678
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCC-----------CHHHHHHHhcccccCC--
Q psy9509 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD-----------NIKKYIHRIGRTARGG-- 218 (231)
Q Consensus 152 ~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~-----------~~~~~~qr~GR~gR~g-- 218 (231)
.+|++|...+|.-+.+.|+.|.++||+||..++.|+|+|+ .+||..+.+. +....+|..|||||.+
T Consensus 401 iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA-~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd 479 (1230)
T KOG0952|consen 401 IHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA-YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD 479 (1230)
T ss_pred hcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC
Confidence 8999999999999999999999999999999999999996 4566655542 4567789999999975
Q ss_pred CCceEEEEee
Q psy9509 219 RQGTSVTLVT 228 (231)
Q Consensus 219 ~~g~~~~~~~ 228 (231)
..|.++++-+
T Consensus 480 ~~G~giIiTt 489 (1230)
T KOG0952|consen 480 SSGEGIIITT 489 (1230)
T ss_pred CCceEEEEec
Confidence 5677777654
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.61 E-value=6.1e-15 Score=134.89 Aligned_cols=120 Identities=19% Similarity=0.225 Sum_probs=105.1
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC--
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR-- 172 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~-- 172 (231)
...|...|..+|... .+.++|||+......+.+...|... ++....++|+++..+|..++++|+..
T Consensus 469 ~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~----------g~~y~rIdGsts~~eRq~~Id~Fn~~~s 538 (1033)
T PLN03142 469 NSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR----------GYQYCRIDGNTGGEDRDASIDAFNKPGS 538 (1033)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc----------CCcEEEECCCCCHHHHHHHHHHhccccC
Confidence 356788888888655 5779999999999999998888766 88899999999999999999999763
Q ss_pred -CccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 173 -KIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 173 -~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
..-+|++|.+++.|||++.+++||+||.||++....|++||+.|.|+...|.++
T Consensus 539 ~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 539 EKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred CceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 234789999999999999999999999999999999999999999987665544
No 108
>KOG0951|consensus
Probab=99.57 E-value=4.2e-14 Score=127.72 Aligned_cols=179 Identities=18% Similarity=0.245 Sum_probs=122.5
Q ss_pred CCCCCcEEEEeeecCCChhhhhcccccCCe-EEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCC
Q psy9509 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPK-LFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCST 97 (231)
Q Consensus 19 ~~~~~q~il~SATl~~~~~~~~~~~~~~p~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (231)
....+.++.+|||+| +-++.......+|. .+.. +...-|..++|.++-+..
T Consensus 471 ~~e~~RlVGLSATLP-Ny~DV~~Fl~v~~~glf~f---------------------------d~syRpvPL~qq~Igi~e 522 (1674)
T KOG0951|consen 471 TEEGSRLVGLSATLP-NYEDVASFLRVDPEGLFYF---------------------------DSSYRPVPLKQQYIGITE 522 (1674)
T ss_pred cccCceeeeecccCC-chhhhHHHhccCccccccc---------------------------CcccCcCCccceEecccc
Confidence 446789999999999 55555444333331 1111 111234556666665443
Q ss_pred CC--hH------HHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhh----------cccccc-----------------
Q psy9509 98 NL--KP------LVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI----------DNVATK----------------- 142 (231)
Q Consensus 98 ~~--k~------~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~----------~~~~~~----------------- 142 (231)
.. |. ....+++......++|||+.+++++-+.|+.++.. ...++.
T Consensus 523 k~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dL 602 (1674)
T KOG0951|consen 523 KKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDL 602 (1674)
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhH
Confidence 22 22 12234455556689999999999999999998732 111110
Q ss_pred CCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ecC------CCCHHHHHHHhc
Q psy9509 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YEA------PDNIKKYIHRIG 212 (231)
Q Consensus 143 ~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~~------p~~~~~~~qr~G 212 (231)
.+-..++++.+|+||+..+|..+++-|+.|.++|+++|..+++|+|+|.-+++|- |+. +.++..-+||.|
T Consensus 603 kdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 603 KDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred HHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 0122378999999999999999999999999999999999999999998766653 332 247899999999
Q ss_pred ccccCCC--CceEEE
Q psy9509 213 RTARGGR--QGTSVT 225 (231)
Q Consensus 213 R~gR~g~--~g~~~~ 225 (231)
|+||.+. .|..++
T Consensus 683 ragrp~~D~~gegii 697 (1674)
T KOG0951|consen 683 RAGRPQYDTCGEGII 697 (1674)
T ss_pred hcCCCccCcCCceee
Confidence 9999874 344443
No 109
>KOG0920|consensus
Probab=99.54 E-value=1.5e-14 Score=129.40 Aligned_cols=215 Identities=16% Similarity=0.115 Sum_probs=141.5
Q ss_pred cCCcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCC----Cccc
Q psy9509 4 RGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS----SGFI 79 (231)
Q Consensus 4 ~~~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 79 (231)
...+++..+.+-+....++.++||||||+. .+.+...|..-|+. .+....-+. .....+...... .+..
T Consensus 301 i~~DflLi~lk~lL~~~p~LkvILMSAT~d--ae~fs~YF~~~pvi-~i~grtfpV----~~~fLEDil~~~~~~~~~~~ 373 (924)
T KOG0920|consen 301 INTDFLLILLKDLLPRNPDLKVILMSATLD--AELFSDYFGGCPVI-TIPGRTFPV----KEYFLEDILSKTGYVSEDDS 373 (924)
T ss_pred CCcccHHHHHHHHhhhCCCceEEEeeeecc--hHHHHHHhCCCceE-eecCCCcch----HHHHHHHHHHHhcccccccc
Confidence 345666666676777778999999999995 66677766644433 322111111 111111111000 0000
Q ss_pred cc--ccCcccccceeeecCCCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE
Q psy9509 80 GK--FTTPAELSEKLTTCSTNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV 153 (231)
Q Consensus 80 ~~--~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 153 (231)
.. ................+.+...+..++... ..+.+|||.+..+++..+.+.|....+... ..+.-+..+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~---~~~~~ilpl 450 (924)
T KOG0920|consen 374 ARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFAD---SLKFAILPL 450 (924)
T ss_pred cccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccccc---ccceEEEec
Confidence 00 000000000122223335666666666543 467899999999999999999975421111 125778999
Q ss_pred cCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC------------------CCHHHHHHHhcccc
Q psy9509 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------------------DNIKKYIHRIGRTA 215 (231)
Q Consensus 154 h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------------------~~~~~~~qr~GR~g 215 (231)
|+.++..++..+...--.|..+|++||++++..|-|++|-+||+.+.- .|.+.-.||.||+|
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 999999999999999999999999999999999999999999985542 36777889999999
Q ss_pred cCCCCceEEEEeec
Q psy9509 216 RGGRQGTSVTLVTT 229 (231)
Q Consensus 216 R~g~~g~~~~~~~~ 229 (231)
|. ..|.||-+++.
T Consensus 531 Rv-~~G~cy~L~~~ 543 (924)
T KOG0920|consen 531 RV-RPGICYHLYTR 543 (924)
T ss_pred Cc-cCCeeEEeech
Confidence 98 79999988874
No 110
>KOG1123|consensus
Probab=99.52 E-value=4.3e-14 Score=117.43 Aligned_cols=183 Identities=20% Similarity=0.247 Sum_probs=157.4
Q ss_pred CCCcEEEEeeecCCChhhhhcc-cccCCeEEeeec-cCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCC
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQL-SLFQPKLFTSVV-EPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTN 98 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~-~~~~p~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
..++.+.++|||-.+-.++.++ ++..|..+...+ +-...+...++.+.+.|++++.+|+.++......+..+.++-..
T Consensus 447 ~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP 526 (776)
T KOG1123|consen 447 QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNP 526 (776)
T ss_pred HHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCc
Confidence 4578899999998777777765 888999999988 44666688999999999999999999998877888888899999
Q ss_pred ChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC-Ccc
Q psy9509 99 LKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR-KID 175 (231)
Q Consensus 99 ~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~-~~~ 175 (231)
.|+.+...+++.+ .+.++|||..+.-...+.+-.|.+- .++|..++.+|.++++.|+.+ .++
T Consensus 527 ~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp---------------fIYG~Tsq~ERm~ILqnFq~n~~vN 591 (776)
T KOG1123|consen 527 NKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP---------------FIYGPTSQNERMKILQNFQTNPKVN 591 (776)
T ss_pred chhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc---------------eEECCCchhHHHHHHHhcccCCccc
Confidence 9999888888766 6889999999998877777666543 689999999999999999874 688
Q ss_pred EEEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCC
Q psy9509 176 LVVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGG 218 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g 218 (231)
-++.+.++...+|+|..++.|+.... .|..+-.||.||..|..
T Consensus 592 TIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 592 TIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred eEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 89999999999999999999998776 47888899999998863
No 111
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.5e-13 Score=123.02 Aligned_cols=126 Identities=20% Similarity=0.279 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc-----c-------------cCCC-------------CcccEE
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA-----T-------------KGAG-------------TKMNIA 151 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~-----~-------------~~~~-------------~~~~~~ 151 (231)
.+...+.....-++|+|+=++..|+..+..+....-.. . ...+ ...++.
T Consensus 369 ~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGia 448 (1041)
T COG4581 369 EIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIA 448 (1041)
T ss_pred HHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhh
Confidence 34555555667799999999999999999886431000 0 0000 012466
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ecC----CCCHHHHHHHhcccccCCC--Cc
Q psy9509 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YEA----PDNIKKYIHRIGRTARGGR--QG 221 (231)
Q Consensus 152 ~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~~----p~~~~~~~qr~GR~gR~g~--~g 221 (231)
++|+++-+..|..+.+-|+.|-++|++||.+++.|+|+|.-++|+- |+- +-++..|+|+.||+||.|- .|
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G 528 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLG 528 (1041)
T ss_pred hhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccc
Confidence 8999999999999999999999999999999999999998776653 332 3478999999999999995 57
Q ss_pred eEEEEee
Q psy9509 222 TSVTLVT 228 (231)
Q Consensus 222 ~~~~~~~ 228 (231)
.+++.-.
T Consensus 529 ~vI~~~~ 535 (1041)
T COG4581 529 TVIVIEP 535 (1041)
T ss_pred eEEEecC
Confidence 7776643
No 112
>KOG0924|consensus
Probab=99.46 E-value=1.6e-13 Score=117.72 Aligned_cols=177 Identities=21% Similarity=0.248 Sum_probs=129.4
Q ss_pred CCCCCcEEEEeeecCCChhhhhcccccCCeE-EeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCC
Q psy9509 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKL-FTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCST 97 (231)
Q Consensus 19 ~~~~~q~il~SATl~~~~~~~~~~~~~~p~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (231)
-..+..+|.+|||+ +.+++...|.+-|.. |... +.|..+ .+...+.
T Consensus 497 rRrdlKliVtSATm--~a~kf~nfFgn~p~f~IpGR-----------------------------TyPV~~--~~~k~p~ 543 (1042)
T KOG0924|consen 497 RRRDLKLIVTSATM--DAQKFSNFFGNCPQFTIPGR-----------------------------TYPVEI--MYTKTPV 543 (1042)
T ss_pred hhccceEEEeeccc--cHHHHHHHhCCCceeeecCC-----------------------------ccceEE--EeccCch
Confidence 34578999999999 588898888754532 1111 122222 2222333
Q ss_pred CChHHH-HHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 98 NLKPLV-LYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 98 ~~k~~~-l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
+.-+++ +.+.++-+ ..+-++||..-.+.++..+..++..+..-......+..+..+++.++...+.++++.-..|.
T Consensus 544 eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v 623 (1042)
T KOG0924|consen 544 EDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGV 623 (1042)
T ss_pred HHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCc
Confidence 333332 22333333 34679999999988888887777664333333335788999999999999999999888999
Q ss_pred ccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 174 IDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 174 ~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
.+++|||++++..+.+|++.+||+.+. |.|.++--||.|||||.| .|.||-+|++
T Consensus 624 RK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 624 RKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred eeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 999999999999999999999998766 557888899999999975 8999998875
No 113
>KOG0923|consensus
Probab=99.46 E-value=4.7e-13 Score=114.44 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=127.6
Q ss_pred CCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCC
Q psy9509 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL 99 (231)
Q Consensus 20 ~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
.++-.+++.|||+ +.+++...+-.-|.... |.. .-.+.-+|...++..
T Consensus 408 RpdLKllIsSAT~--DAekFS~fFDdapIF~i----PGR--------------------------RyPVdi~Yt~~PEAd 455 (902)
T KOG0923|consen 408 RPDLKLLISSATM--DAEKFSAFFDDAPIFRI----PGR--------------------------RYPVDIFYTKAPEAD 455 (902)
T ss_pred CCcceEEeecccc--CHHHHHHhccCCcEEec----cCc--------------------------ccceeeecccCCchh
Confidence 4688999999999 57777776533332211 000 111223444444444
Q ss_pred hHHHHHH-HHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 100 KPLVLYQ-LIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 100 k~~~l~~-ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
-+++.+. +++-+ +.+-+|||..-.++.+...+.|.+.- +.+......+-+..+|+.++...+..+++.--.|..+
T Consensus 456 YldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~-~~LGski~eliv~PiYaNLPselQakIFePtP~gaRK 534 (902)
T KOG0923|consen 456 YLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERC-RRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARK 534 (902)
T ss_pred HHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHH-HHhccccceEEEeeccccCChHHHHhhcCCCCCCcee
Confidence 4444333 33333 56789999999999998888887651 1122222356688999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 176 LVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
|++||++++..+.|+++.+||+-++ |.|.++-.||+|||||-| .|.|+-+|+.
T Consensus 535 VVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 535 VVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred EEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 9999999999999999999997554 568899999999999986 8999999873
No 114
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.41 E-value=4e-12 Score=118.37 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=86.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc-cEEEEcCccccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI-DLVVASDNLARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gidi~ 190 (231)
.++++||||.+++.|+.+++.|.+.+..... ......+..+||+.+ ++.+++++|+++.. .|+|+++++..|+|+|
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~-~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYG-QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcC-CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcc
Confidence 4579999999999999999998875321110 111235667899876 56789999999887 5899999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhcccccCCC
Q psy9509 191 NIDVVINYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 191 ~v~~vi~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
.+.+|+.+..+.|...|.||+||+.|...
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999743
No 115
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=3.5e-12 Score=113.32 Aligned_cols=127 Identities=15% Similarity=0.173 Sum_probs=102.0
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|+.++.+-+... .+.|+||.|.|.+.++.+++.|.+. ++.+.++++.-...|...+-
T Consensus 403 ~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~e~EA~IIa--- 469 (925)
T PRK12903 403 SIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEA----------NIPHTVLNAKQNAREAEIIA--- 469 (925)
T ss_pred cEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC----------CCCceeecccchhhHHHHHH---
Confidence 44556677888888766543 7889999999999999999999987 88888888865444433332
Q ss_pred HcC-CccEEEEcCccccccCcCCCc--------EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRR-KIDLVVASDNLARGIDVENID--------VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~-~~~vlv~T~~~~~Gidi~~v~--------~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.| .-.|.|||++++||.||.--. |||....|.|..---|..||+||.|..|.+-.|++-+|
T Consensus 470 ~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 470 KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 334 344899999999999996332 89999999999999999999999999999999988654
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=1.1e-11 Score=108.73 Aligned_cols=128 Identities=18% Similarity=0.133 Sum_probs=102.7
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
..+.....|+.++.+-+... .+.|+||.+.|.+.++.+++.|.+. ++.+..+++.-...|-..+-++-
T Consensus 404 ~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~----------gI~h~vLNAk~~~~EA~IIa~AG 473 (764)
T PRK12326 404 RVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA----------GVPAVVLNAKNDAEEARIIAEAG 473 (764)
T ss_pred ceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC----------CCcceeeccCchHhHHHHHHhcC
Confidence 34455667888888766543 7889999999999999999999987 88888898875544444444433
Q ss_pred HcCCccEEEEcCccccccCcCC---------------CcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVEN---------------IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~---------------v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.| .|.|||++++||.||.- -=+||-...+.|..---|-.||+||.|..|.+-.|++-+|
T Consensus 474 ~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 474 KYG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CCC--cEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 333 38999999999999852 2378989999999999999999999999999999998664
No 117
>KOG0926|consensus
Probab=99.29 E-value=5.3e-12 Score=110.16 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=68.4
Q ss_pred ccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC------------------CCHHHHHH
Q psy9509 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------------------DNIKKYIH 209 (231)
Q Consensus 148 ~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------------------~~~~~~~q 209 (231)
..+..+++=++..++.++++.--.|..-++|||++++..+.||++.+|++.+.- .|-++--|
T Consensus 605 LyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQ 684 (1172)
T KOG0926|consen 605 LYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQ 684 (1172)
T ss_pred eEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccch
Confidence 356777888888888888888888999999999999999999999999987753 25666679
Q ss_pred HhcccccCCCCceEEEEee
Q psy9509 210 RIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 210 r~GR~gR~g~~g~~~~~~~ 228 (231)
|+|||||.| .|+||-+|+
T Consensus 685 RAGRAGRtg-pGHcYRLYS 702 (1172)
T KOG0926|consen 685 RAGRAGRTG-PGHCYRLYS 702 (1172)
T ss_pred hccccCCCC-CCceeehhh
Confidence 999999986 899998875
No 118
>KOG0385|consensus
Probab=99.29 E-value=2.4e-11 Score=105.63 Aligned_cols=121 Identities=20% Similarity=0.231 Sum_probs=103.6
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
....|...|-++|... .+.++|||..-....+-+..+..-. ++....+.|+++.++|...++.|....
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R----------~y~ycRiDGSt~~eeR~~aI~~fn~~~ 537 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLR----------GYEYCRLDGSTSHEEREDAIEAFNAPP 537 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhc----------CceeEeecCCCCcHHHHHHHHhcCCCC
Confidence 3457777777777655 7889999999888887777776655 889999999999999999999998754
Q ss_pred ---ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 174 ---IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 174 ---~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
.-.|++|.+++.|||+..++.||.||..|++..-.|..-||.|.|+...|.+|
T Consensus 538 s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 538 SEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred cceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 33679999999999999999999999999999999999999999987655554
No 119
>KOG0953|consensus
Probab=99.27 E-value=5.2e-11 Score=100.38 Aligned_cols=115 Identities=20% Similarity=0.274 Sum_probs=90.7
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--CCccEEEEc
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--RKIDLVVAS 180 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--~~~~vlv~T 180 (231)
.+..-++...++-|+|-+ |+.....+...+.+. ++..+++++|+++++.|.+....|++ +..+|||||
T Consensus 347 ~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~---------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs 416 (700)
T KOG0953|consen 347 TALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA---------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS 416 (700)
T ss_pred hhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh---------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEee
Confidence 344444555555676644 566677777777776 24559999999999999999999988 889999999
Q ss_pred CccccccCcCCCcEEEEecCC---------CCHHHHHHHhcccccCCC---CceEEEEee
Q psy9509 181 DNLARGIDVENIDVVINYEAP---------DNIKKYIHRIGRTARGGR---QGTSVTLVT 228 (231)
Q Consensus 181 ~~~~~Gidi~~v~~vi~~~~p---------~~~~~~~qr~GR~gR~g~---~g~~~~~~~ 228 (231)
|++++|+|+ +++.||.++.- -+.++..|-+|||||.|. .|.+..+..
T Consensus 417 DAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 417 DAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred ccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999999 68888887663 468899999999999974 677777654
No 120
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=3.9e-11 Score=108.31 Aligned_cols=128 Identities=19% Similarity=0.188 Sum_probs=104.4
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|+.++.+-+... .+.|+||-+.|++.++.++++|... ++.+.++++.....|...+-++-
T Consensus 605 ~vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~----------gI~H~VLNAK~h~~EAeIVA~AG 674 (1112)
T PRK12901 605 LVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMR----------KIPHNVLNAKLHQKEAEIVAEAG 674 (1112)
T ss_pred eEecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHc----------CCcHHHhhccchhhHHHHHHhcC
Confidence 44556677888888877654 7889999999999999999999987 77777777765555555555554
Q ss_pred HcCCccEEEEcCccccccCcC--------CCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVE--------NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.|. |.|||++++||.||. +-=+||-...+.|..---|-.||+||.|..|.+-.|++-+|
T Consensus 675 ~~Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 675 QPGT--VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CCCc--EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 4444 899999999999996 33478888899999999999999999999999999998665
No 121
>KOG0384|consensus
Probab=99.22 E-value=3.6e-11 Score=108.97 Aligned_cols=123 Identities=20% Similarity=0.244 Sum_probs=107.3
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
....|+..|-+||.+. .+.++|||..-+...+-|+++|... ++..-.+.|....+.|.+.++.|....
T Consensus 680 ~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r----------~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 680 QSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLR----------GYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred HhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHc----------CCcceeccCCcchHHHHHHHHhccCCC
Confidence 3456777777777665 6789999999999999999999988 899999999999999999999998743
Q ss_pred ---ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCce--EEEEee
Q psy9509 174 ---IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT--SVTLVT 228 (231)
Q Consensus 174 ---~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~ 228 (231)
.-.|+||.+++.|||+-.++.||.||..|++..-+|.-.||.|.|++.. +|-+++
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVT 809 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVT 809 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEec
Confidence 3478999999999999999999999999999999999999999997644 444554
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=9.2e-11 Score=105.48 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=101.4
Q ss_pred eecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 93 TTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 93 ~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
.+.....|+.++.+-+... .+.|+||-|.|.+.++.++..|.+. ++....++..-...|...+-++-+
T Consensus 546 iy~t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~----------gi~h~vLNak~~~~Ea~iia~AG~ 615 (970)
T PRK12899 546 FYMTEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQN----------RIEHTVLNAKNHAQEAEIIAGAGK 615 (970)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHc----------CCcceecccchhhhHHHHHHhcCC
Confidence 4555667888877766543 6789999999999999999999987 888888888655444444443333
Q ss_pred cCCccEEEEcCccccccCcCC--------CcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 171 RRKIDLVVASDNLARGIDVEN--------IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~--------v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
. -.|.|||++++||.|+.- -=+||....|.|..--.|-.||+||.|..|.+-.|++-+|
T Consensus 616 ~--g~VTIATNmAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 616 L--GAVTVATNMAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred C--CcEEEeeccccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 3 348999999999999842 2378888999999999999999999999999999998664
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=6.8e-11 Score=106.09 Aligned_cols=128 Identities=20% Similarity=0.165 Sum_probs=101.5
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.++.....|+.++.+-+... .+.|+||-+.|++.++.++++|.+. ++.+.+++......|...+-++-
T Consensus 426 ~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~----------gi~h~VLNAk~~~~EA~IIa~AG 495 (913)
T PRK13103 426 LVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKE----------GIEHKVLNAKYHEKEAEIIAQAG 495 (913)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHc----------CCcHHHhccccchhHHHHHHcCC
Confidence 44556677888888877654 7889999999999999999999987 77776777765444444444333
Q ss_pred HcCCccEEEEcCccccccCcC-------------------------------------CCcEEEEecCCCCHHHHHHHhc
Q psy9509 170 RRRKIDLVVASDNLARGIDVE-------------------------------------NIDVVINYEAPDNIKKYIHRIG 212 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~-------------------------------------~v~~vi~~~~p~~~~~~~qr~G 212 (231)
+. -.|.|||++++||.||. +-=+||-...+.|..---|-.|
T Consensus 496 ~~--GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrG 573 (913)
T PRK13103 496 RP--GALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRG 573 (913)
T ss_pred CC--CcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhcc
Confidence 33 34899999999999994 2237888888999999999999
Q ss_pred ccccCCCCceEEEEeecCC
Q psy9509 213 RTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 213 R~gR~g~~g~~~~~~~~~~ 231 (231)
|+||.|..|.+-.|++-+|
T Consensus 574 RaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 574 RAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred ccccCCCCCceEEEEEcCc
Confidence 9999999999999998765
No 124
>KOG0387|consensus
Probab=99.18 E-value=1.5e-10 Score=101.04 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=109.3
Q ss_pred eecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 93 TTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 93 ~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
.......|...+..+|..- .+.++|.|..++....-+...|... .++.+..+.|.++...|..++++|.
T Consensus 524 g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~---------~~ysylRmDGtT~~~~R~~lVd~Fn 594 (923)
T KOG0387|consen 524 GDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA---------KGYSYLRMDGTTPAALRQKLVDRFN 594 (923)
T ss_pred CChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc---------CCceEEEecCCCccchhhHHHHhhc
Confidence 4556678999999988653 6779999999999999998888742 1889999999999999999999999
Q ss_pred cCCcc--EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 171 RRKID--LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 171 ~~~~~--vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
.+..- .|++|.+++.|+|+..++.||.||+.|+++.-.|..-|+.|.|++..|++|
T Consensus 595 e~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 595 EDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred CCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 87643 568899999999999999999999999999999999999999987766664
No 125
>KOG0390|consensus
Probab=99.12 E-value=8.4e-10 Score=97.87 Aligned_cols=123 Identities=16% Similarity=0.163 Sum_probs=92.7
Q ss_pred ecCCCChHHHHHHHHHhcCCCcEEEEE---cchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 94 TCSTNLKPLVLYQLIRKHAMQGVLCFV---NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~~~~~~iIF~---~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
......|+..|..++.... .++++|+ ..-..+..+.+.+... .|+.+..+||.++..+|..+++.|.
T Consensus 573 ~~~ks~kl~~L~~ll~~~~-ek~~~~~v~Isny~~tldl~e~~~~~---------~g~~~~rLdG~~~~~qRq~~vd~FN 642 (776)
T KOG0390|consen 573 DGSKSGKLLVLVFLLEVIR-EKLLVKSVLISNYTQTLDLFEQLCRW---------RGYEVLRLDGKTSIKQRQKLVDTFN 642 (776)
T ss_pred cchhhhHHHHHHHHHHHHh-hhcceEEEEeccHHHHHHHHHHHHhh---------cCceEEEEcCCCchHHHHHHHHhcc
Confidence 3334567777777763321 2333333 3333344444444443 2889999999999999999999998
Q ss_pred cCCc--c-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 171 RRKI--D-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 171 ~~~~--~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
+..- . .|.+|.+++.||++-+++.+|.+|.+|+++.-.|.++|+.|.|++..|++|
T Consensus 643 ~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 643 DPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 7433 3 457789999999999999999999999999999999999999998888775
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.10 E-value=4.2e-09 Score=97.08 Aligned_cols=108 Identities=14% Similarity=0.248 Sum_probs=78.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.+++++||++|.+..+.++..|..... ..+.. .+..+.. ..|.+++++|+.++..||+||+.+.+|||+|+
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~------~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g 743 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPE------FEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPG 743 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhcc------ccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCC
Confidence 456899999999999999999975310 00222 2223322 46888999999999999999999999999997
Q ss_pred Cc--EEEEecCCCC------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 192 ID--VVINYEAPDN------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 192 v~--~vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
.. +||..+.|.. ...+.|.+||.=|..+..-++++++
T Consensus 744 ~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 744 NGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred CceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 76 4667776631 2445688999999875544555544
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.08 E-value=1.8e-09 Score=96.08 Aligned_cols=93 Identities=20% Similarity=0.370 Sum_probs=74.7
Q ss_pred HHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHH--HHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCC-
Q psy9509 126 AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ--RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD- 202 (231)
Q Consensus 126 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~--r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~- 202 (231)
++++.+.|+..+| +.++..+.++.+... -+..+.+|..|+.+|||.|++++.|.|+|+++.|...|...
T Consensus 493 terieeeL~~~FP--------~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 493 TERIEEELKRLFP--------GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred HHHHHHHHHHHCC--------CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 5666777776665 778888888776544 46779999999999999999999999999999987655532
Q ss_pred -----------CHHHHHHHhcccccCCCCceEEEE
Q psy9509 203 -----------NIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 203 -----------~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
....+.|-+||+||.+..|.+++=
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQ 599 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQ 599 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEE
Confidence 356677999999999888877653
No 128
>KOG0925|consensus
Probab=99.07 E-value=1.3e-09 Score=90.89 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=113.5
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCCh
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLK 100 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 100 (231)
++-.+|.||||+ ...++...+.+-|.. .+. . ..|..+ +|......+.
T Consensus 190 pdLk~vvmSatl--~a~Kfq~yf~n~Pll-~vp---g-------------------------~~PvEi--~Yt~e~erDy 236 (699)
T KOG0925|consen 190 PDLKLVVMSATL--DAEKFQRYFGNAPLL-AVP---G-------------------------THPVEI--FYTPEPERDY 236 (699)
T ss_pred CCceEEEeeccc--chHHHHHHhCCCCee-ecC---C-------------------------CCceEE--EecCCCChhH
Confidence 488999999998 567777766555533 221 0 111111 3333333334
Q ss_pred HHHHH----HHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH---c--
Q psy9509 101 PLVLY----QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR---R-- 171 (231)
Q Consensus 101 ~~~l~----~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~---~-- 171 (231)
+++.. ++-....++-+++|....++++..++.+... .....+..+...+..+|. .++.++++.-. .
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re-~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISRE-VDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHH-HHhhccccCCceEEecCc----hhhccccCCCCcccCCC
Confidence 44433 3323335678999999999999999988743 112223344677888883 22233322221 1
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
-..+|+|+|++++..+.++++-+||+-++ |.|-.+-.||.||+||. ..|.|+.+|+++
T Consensus 312 ~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 24679999999999999999999998665 56888999999999996 689999998753
No 129
>KOG0389|consensus
Probab=99.02 E-value=2.2e-09 Score=93.91 Aligned_cols=119 Identities=20% Similarity=0.180 Sum_probs=105.8
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC-
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK- 173 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~- 173 (231)
+..|...|..+|... .+.|++||..-....+-+-..|... ++....+.|.+.-.+|..++.+|...+
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l----------~~~ylRLDGsTqV~~RQ~lId~Fn~d~d 828 (941)
T KOG0389|consen 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL----------GYKYLRLDGSTQVNDRQDLIDEFNTDKD 828 (941)
T ss_pred hhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc----------CceEEeecCCccchHHHHHHHhhccCCc
Confidence 567899999999776 6789999999999888888888887 899999999999999999999998754
Q ss_pred cc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 174 ID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 174 ~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
+. +|++|.+++.|||+..+++||.+|...++-.-.|.--||.|.|+...|.+
T Consensus 829 ifVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV 881 (941)
T KOG0389|consen 829 IFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTV 881 (941)
T ss_pred eEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEE
Confidence 43 67999999999999999999999999999999999999999998765544
No 130
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.99 E-value=5.6e-09 Score=93.61 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=64.5
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC--CHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL--KFDQRNKIIQ 167 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~--~~~~r~~~~~ 167 (231)
.++.....|+.++.+-+... .+.|+||-+.|.+.++.+++.|.+. ++.+.++++.- ...|...+-+
T Consensus 401 ~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~----------gi~h~vLNAk~~~~~~EA~IIA~ 470 (870)
T CHL00122 401 LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEY----------RLPHQLLNAKPENVRRESEIVAQ 470 (870)
T ss_pred eEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHc----------CCccceeeCCCccchhHHHHHHh
Confidence 44555666777777655433 7889999999999999999999987 88888888863 2344444444
Q ss_pred HHHcCCccEEEEcCccccccCcC
Q psy9509 168 EFRRRKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 168 ~f~~~~~~vlv~T~~~~~Gidi~ 190 (231)
+-+ .-.|.|||++++||.||.
T Consensus 471 AG~--~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 471 AGR--KGSITIATNMAGRGTDII 491 (870)
T ss_pred cCC--CCcEEEeccccCCCcCee
Confidence 333 334899999999999983
No 131
>KOG0392|consensus
Probab=98.93 E-value=1.3e-08 Score=92.88 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=103.5
Q ss_pred CCCChHHHHHHHHHhc----------------CCCcEEEEEcchHHHHHHHHHHhhh-ccccccCCCCcccEEEEcCCCC
Q psy9509 96 STNLKPLVLYQLIRKH----------------AMQGVLCFVNTAQGAHRLARLLHHI-DNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~----------------~~~~~iIF~~s~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
....|+.+|.++|.+- .+.|++|||.-+...+.+.+-|-+. .+ .+....+.|+.+
T Consensus 1307 ~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp--------sVtymRLDGSVp 1378 (1549)
T KOG0392|consen 1307 QHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP--------SVTYMRLDGSVP 1378 (1549)
T ss_pred hhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC--------ceeEEEecCCCC
Confidence 4567899999998654 2468999999999999988887654 22 455668899999
Q ss_pred HHHHHHHHHHHHcC-CccEE-EEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEE
Q psy9509 159 FDQRNKIIQEFRRR-KIDLV-VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSV 224 (231)
Q Consensus 159 ~~~r~~~~~~f~~~-~~~vl-v~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 224 (231)
+.+|.++.++|+++ .++|| ++|.+++.|+|+.+++.||.+.-.|++..-.|..-||.|.|++..+=
T Consensus 1379 p~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1379 PGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred cHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 99999999999998 78877 67789999999999999999999999999999999999999876543
No 132
>KOG0391|consensus
Probab=98.90 E-value=1.6e-08 Score=91.94 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=104.9
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
.+..|+..|.-+|+.. .+.++|||+.-....+-+...|+.+ ++....+.|....++|...+++|+...
T Consensus 1257 yDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyH----------gylY~RLDg~t~vEqRQaLmerFNaD~ 1326 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYH----------GYLYVRLDGNTSVEQRQALMERFNADR 1326 (1958)
T ss_pred cccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhc----------ceEEEEecCCccHHHHHHHHHHhcCCC
Confidence 3677888888888765 6889999999999999999999888 899999999999999999999998764
Q ss_pred c--cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCc--eEEEEee
Q psy9509 174 I--DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG--TSVTLVT 228 (231)
Q Consensus 174 ~--~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~ 228 (231)
. ..|++|...+.|||+.+.+.||.||..|++.--.|.-.||.|.|+.. ..|-+++
T Consensus 1327 RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1327 RIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred ceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 3 36688999999999999999999999999888888888888888643 3344444
No 133
>KOG0388|consensus
Probab=98.88 E-value=8.3e-09 Score=89.68 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=106.9
Q ss_pred cCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 95 CSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
..+..|+..|-.+|.+. .+.++++|+.-.+..+.+..+|... ++....+.|+....+|..++.+|+..
T Consensus 1024 itdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr----------~Y~ylRLDGSsk~~dRrd~vrDwQ~s 1093 (1185)
T KOG0388|consen 1024 ITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR----------GYTYLRLDGSSKASDRRDVVRDWQAS 1093 (1185)
T ss_pred hccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh----------ccceEEecCcchhhHHHHHHhhccCC
Confidence 34677888888888765 6789999999999999999999877 89999999999999999999999986
Q ss_pred Ccc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 173 KID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 173 ~~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
.+- .|++|.+++.|||+...+.||.||..|++..-.|...||.|.|+...+.+
T Consensus 1094 diFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1094 DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred ceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceee
Confidence 655 56999999999999999999999999999999999999999998665444
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.86 E-value=8.3e-08 Score=89.22 Aligned_cols=109 Identities=11% Similarity=0.180 Sum_probs=78.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.+++++||++|.+..+.+++.|..... ..++. ...+ +++...|.+++++|+.++-.||++|..+.+|||+|+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~------~~~~~-ll~Q-g~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg 822 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE------LEGYV-LLAQ-GVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPG 822 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc------ccCce-EEec-CCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCC
Confidence 456899999999999999999975411 00112 2223 333345788999999988889999999999999996
Q ss_pred C--cEEEEecCCCC------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 192 I--DVVINYEAPDN------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 192 v--~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
- .+||....|.. ...+.|.+||.=|..+..-++++++
T Consensus 823 ~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 823 DELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred CceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 5 67888776631 3345688899988865443455444
No 135
>KOG0949|consensus
Probab=98.84 E-value=5.9e-09 Score=93.24 Aligned_cols=78 Identities=23% Similarity=0.307 Sum_probs=68.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC-CCHHHHHHHhcccccCCC--CceEEE
Q psy9509 149 NIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP-DNIKKYIHRIGRTARGGR--QGTSVT 225 (231)
Q Consensus 149 ~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p-~~~~~~~qr~GR~gR~g~--~g~~~~ 225 (231)
++.++|+++....|..++=-|++|...||+||..++.|||+|.-++|+-.|.- -++-.|.|++|||||.|- -|.++.
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~F 1043 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVF 1043 (1330)
T ss_pred cccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEE
Confidence 68899999999999999999999999999999999999999987777665543 478999999999999984 466655
Q ss_pred E
Q psy9509 226 L 226 (231)
Q Consensus 226 ~ 226 (231)
+
T Consensus 1044 m 1044 (1330)
T KOG0949|consen 1044 M 1044 (1330)
T ss_pred E
Confidence 4
No 136
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.80 E-value=1.6e-07 Score=86.11 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=75.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.+++++|+++|.+..+.+++.|... ...+ ...|... .+.+++++|+.+.-.||++|..+.+|+|+|+
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~----------~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~ 712 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQW----------QVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQ 712 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhc----------CCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCC
Confidence 5678999999999999999998643 2333 4445322 2456899999988889999999999999973
Q ss_pred --CcEEEEecCCC------------------------------CHHHHHHHhcccccCCCCceEEEEee
Q psy9509 192 --IDVVINYEAPD------------------------------NIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 192 --v~~vi~~~~p~------------------------------~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
...||....|. -...+.|-+||.=|..+..-++++++
T Consensus 713 ~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 713 ADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 45566666652 13456788999999765433454444
No 137
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.76 E-value=8.7e-08 Score=86.23 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=65.1
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC-C-HHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL-K-FDQRNKIIQ 167 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~-~-~~~r~~~~~ 167 (231)
.++.....|+.++.+-+... .+.|+||-+.|.+.++.+++.|.+. ++.+.+++..- . ..|...+-+
T Consensus 416 ~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~----------gi~h~vLNAk~~~~~~EA~IIa~ 485 (939)
T PRK12902 416 QVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQ----------GIPHNLLNAKPENVEREAEIVAQ 485 (939)
T ss_pred eEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHc----------CCchheeeCCCcchHhHHHHHHh
Confidence 34555667888888766543 7889999999999999999999987 88888888862 2 334343333
Q ss_pred HHHcCCccEEEEcCccccccCcC
Q psy9509 168 EFRRRKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 168 ~f~~~~~~vlv~T~~~~~Gidi~ 190 (231)
+-+. -.|.|||++++||.||.
T Consensus 486 AG~~--GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 486 AGRK--GAVTIATNMAGRGTDII 506 (939)
T ss_pred cCCC--CcEEEeccCCCCCcCEe
Confidence 3333 34899999999999974
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.75 E-value=3.6e-07 Score=82.36 Aligned_cols=112 Identities=17% Similarity=0.265 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCCHHHHHHHHHHHHcCCc-cEEEEc
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLKFDQRNKIIQEFRRRKI-DLVVAS 180 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~~~~r~~~~~~f~~~~~-~vlv~T 180 (231)
.+..++...+ ++++||++|.+..+.+++.+... .. .....+|..+ +...+++|+.+.- -++|+|
T Consensus 470 ~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~----------~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~ 535 (654)
T COG1199 470 YLREILKASP-GGVLVLFPSYEYLKRVAERLKDE----------RSTLPVLTQGEDE---REELLEKFKASGEGLILVGG 535 (654)
T ss_pred HHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhc----------CccceeeecCCCc---HHHHHHHHHHhcCCeEEEee
Confidence 3444444434 48999999999999999999865 22 2344455444 4478888887655 899999
Q ss_pred CccccccCcCCC--cEEEEecCCC------------------------------CHHHHHHHhcccccCCCCceEEEEee
Q psy9509 181 DNLARGIDVENI--DVVINYEAPD------------------------------NIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 181 ~~~~~Gidi~~v--~~vi~~~~p~------------------------------~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
..+.+|||+|+- ..||..+.|. ....+.|.+||.=|..+..-++++++
T Consensus 536 gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 536 GSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred ccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 999999999855 6688888874 25677899999999755444444443
No 139
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.69 E-value=2.1e-07 Score=86.35 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=102.1
Q ss_pred ChHHHHHHHH-Hh--cCCC--cEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC-
Q psy9509 99 LKPLVLYQLI-RK--HAMQ--GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR- 172 (231)
Q Consensus 99 ~k~~~l~~ll-~~--~~~~--~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~- 172 (231)
.|...+.+++ .. ..+. +++||++-....+-+...+... +.....++|+++...|...+++|..+
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~----------~~~~~~ldG~~~~~~r~~~i~~f~~~~ 761 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKAL----------GIKYVRLDGSTPAKRRQELIDRFNADE 761 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhc----------CCcEEEEeCCCChhhHHHHHHHhhcCC
Confidence 6788888877 33 3566 8999999999999999999887 67899999999999999999999996
Q ss_pred Ccc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 173 KID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 173 ~~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
... +++++.+++.|+|+...++||++|..|++....|...|+.|.|+...+-++
T Consensus 762 ~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 762 EEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred CCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 334 567788999999999999999999999999999999999999986655543
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.68 E-value=1.1e-06 Score=79.50 Aligned_cols=104 Identities=20% Similarity=0.333 Sum_probs=73.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc----CCccEEEEcCcccccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR----RKIDLVVASDNLARGI 187 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~----~~~~vlv~T~~~~~Gi 187 (231)
.++.++||++|.+..+.++..|.... +.. ...+|.. .+.++++.|+. ++-.||++|..+..||
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~---------~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGV 599 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDL---------RLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGL 599 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhc---------CCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 34469999999999999999987531 222 3445542 46778877764 5677999999999999
Q ss_pred CcCC--CcEEEEecCCCC------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 188 DVEN--IDVVINYEAPDN------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 188 di~~--v~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
|+|+ +++||....|.. ...+.|.+||.=|..+..-++++++
T Consensus 600 D~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD 672 (697)
T PRK11747 600 DLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILD 672 (697)
T ss_pred cCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEc
Confidence 9986 577888777631 2245688899988765433444444
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.65 E-value=2.8e-07 Score=83.34 Aligned_cols=97 Identities=22% Similarity=0.383 Sum_probs=77.6
Q ss_pred ccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcc---hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNT---AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
.|+...|... .-.+.+.++++.... -.|||++. ++.++++++.|+.+ |+.+..+|+. +
T Consensus 312 RNIvD~y~~~---~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~----------Gi~a~~~~a~-----~ 372 (1187)
T COG1110 312 RNIVDIYVES---ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSH----------GINAELIHAE-----K 372 (1187)
T ss_pred hheeeeeccC---ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhc----------CceEEEeecc-----c
Confidence 3444444333 445566667766654 59999999 99999999999998 8999999983 3
Q ss_pred HHHHHHHHcCCccEEEEc----CccccccCcC-CCcEEEEecCC
Q psy9509 163 NKIIQEFRRRKIDLVVAS----DNLARGIDVE-NIDVVINYEAP 201 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T----~~~~~Gidi~-~v~~vi~~~~p 201 (231)
.+.++.|..|++++||+. .++-||+|+| .+.++|.++.|
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 788999999999999774 4799999999 56789999999
No 142
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.64 E-value=1.7e-07 Score=69.84 Aligned_cols=112 Identities=23% Similarity=0.336 Sum_probs=73.1
Q ss_pred HHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC--cc
Q psy9509 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD--NL 183 (231)
Q Consensus 106 ~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~ 183 (231)
++++.. ++.++||++|.+..+.+++.+..... ......+.- ...++..+++.|+.+.-.||+|+. .+
T Consensus 3 ~l~~~~-~g~~lv~f~Sy~~l~~~~~~~~~~~~--------~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~ 71 (167)
T PF13307_consen 3 ELISAV-PGGVLVFFPSYRRLEKVYERLKERLE--------EKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSF 71 (167)
T ss_dssp HHHHCC-SSEEEEEESSHHHHHHHHTT-TSS-E---------ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCC
T ss_pred HHHhcC-CCCEEEEeCCHHHHHHHHHHHHhhcc--------cccceeeec--CcchHHHHHHHHHhccCeEEEEEecccE
Confidence 344443 46899999999999999998876521 011122222 345788999999999989999998 99
Q ss_pred ccccCcCC--CcEEEEecCCCC------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 184 ARGIDVEN--IDVVINYEAPDN------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 184 ~~Gidi~~--v~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
..|+|+|+ +..||..+.|.. .....|.+||+-|..+.--++++++
T Consensus 72 ~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 72 SEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp GSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred EEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 99999995 667998888831 2344588999999866544555444
No 143
>KOG1015|consensus
Probab=98.55 E-value=3.4e-07 Score=82.19 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=106.7
Q ss_pred ecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccc-----------cC-CCCcccEEEEcCCCCH
Q psy9509 94 TCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVAT-----------KG-AGTKMNIAEVYSDLKF 159 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~-----------~~-~~~~~~~~~~h~~~~~ 159 (231)
......|...|+.+|+.. -+.+.|||..+......+-.+|........ .+ +..|.....+.|..+.
T Consensus 1121 v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s 1200 (1567)
T KOG1015|consen 1121 VLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTS 1200 (1567)
T ss_pred hhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccH
Confidence 344567888899998765 578999999999988888777765411111 11 2235567788999999
Q ss_pred HHHHHHHHHHHcC---Cc-cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 160 DQRNKIIQEFRRR---KI-DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 160 ~~r~~~~~~f~~~---~~-~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
..|....+.|.+- .. -.||+|.+++.|||+-.++.||.||..|+++--+|.+=|+.|+|+..-||+|
T Consensus 1201 ~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1201 QSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999999999873 12 2789999999999999999999999999999999999999999998777765
No 144
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=4.9e-06 Score=75.62 Aligned_cols=114 Identities=14% Similarity=0.228 Sum_probs=75.5
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc----CCccEEEEc--Ccccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR----RKIDLVVAS--DNLAR 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~----~~~~vlv~T--~~~~~ 185 (231)
.++.++||++|-...+.+++.+.......... .......-+. ...++..++++|+. |.-.||+|+ ..+++
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~---~~k~i~~E~~-~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sE 596 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIE---KKKLIFVETK-DAQETSDALERYKQAVSEGRGAVLLSVAGGKVSE 596 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHh---cCCCEEEeCC-CcchHHHHHHHHHHHHhcCCceEEEEecCCcccC
Confidence 35679999999999999998887531000000 0112222221 12577889999965 345599888 88999
Q ss_pred ccCcCC--CcEEEEecCCC-C------------------------------HHHHHHHhcccccCCCCceEEEEeec
Q psy9509 186 GIDVEN--IDVVINYEAPD-N------------------------------IKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 186 Gidi~~--v~~vi~~~~p~-~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
|||+++ +++||..+.|. + .....|.+||+=|..+.--+++++++
T Consensus 597 GIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 597 GIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred ccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 999986 57899999885 1 12345889999998655445555543
No 145
>KOG1000|consensus
Probab=98.43 E-value=1.4e-06 Score=73.30 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=103.5
Q ss_pred CCChHHHHHHHHHh------cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRK------HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~l~~ll~~------~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|+..+.+.+.. ..+.+.+||+.-....+.+...+++. +++...+.|..+..+|....+.|+
T Consensus 470 giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r----------~vg~IRIDGst~s~~R~ll~qsFQ 539 (689)
T KOG1000|consen 470 GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKR----------KVGSIRIDGSTPSHRRTLLCQSFQ 539 (689)
T ss_pred cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHc----------CCCeEEecCCCCchhHHHHHHHhc
Confidence 34577777776655 25678999999999999999999988 899999999999999999999998
Q ss_pred cC-CccE-EEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEe
Q psy9509 171 RR-KIDL-VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 171 ~~-~~~v-lv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
.. ++.| +++-.+++.|+++.....|+....+|++.-.+|.-.|+.|.|++..+-+.|
T Consensus 540 ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 540 TSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred cccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 75 4454 466689999999999999999999999999999999999999876555443
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.42 E-value=2.4e-05 Score=66.29 Aligned_cols=180 Identities=12% Similarity=0.141 Sum_probs=127.2
Q ss_pred CCcEEEEeeecCCChhhhhcccccCC-eEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCC---
Q psy9509 22 RPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCST--- 97 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~~~~~~~~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (231)
=+|+|++|+...+++..+....+.+- ..+......... .........++|.+...+.
T Consensus 215 ~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~-------------------g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 215 YRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEAS-------------------GVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred eeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccc-------------------eeeeccccCCceEEEEecCCCc
Confidence 37999999999988888888755543 333333221110 0112344566777665332
Q ss_pred ----CChHHHHHH-H---HH-hcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 98 ----NLKPLVLYQ-L---IR-KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 98 ----~~k~~~l~~-l---l~-~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
+.+.++..+ + +. ......+|||++|--+=-++-+.|++. ++....+|--.+..+-.+.-..
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~----------~~sF~~i~EYts~~~isRAR~~ 345 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKE----------NISFVQISEYTSNSDISRARSQ 345 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhc----------CCeEEEecccCCHHHHHHHHHH
Confidence 234444333 2 22 334568999999999999999999876 7888888888898999999999
Q ss_pred HHcCCccEEEEcCc--cccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCC------CceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDN--LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR------QGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~--~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~------~g~~~~~~~~~ 230 (231)
|..|+.++|+-|.= .=+-..+.++.+||.|++|..+.-|-..++-.+.... ...|.++++.-
T Consensus 346 F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~ 415 (442)
T PF06862_consen 346 FFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKY 415 (442)
T ss_pred HHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHh
Confidence 99999999999963 4455667889999999999998888877755544332 57788877754
No 147
>KOG0386|consensus
Probab=98.40 E-value=1e-06 Score=79.49 Aligned_cols=121 Identities=17% Similarity=0.208 Sum_probs=104.6
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
..+.|++.|-.+|.+. .+++++.||.-..-..-+..+|.-. ++....+.|....++|-..++.|....
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~----------~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIR----------EYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhh----------hhheeeecCCcchhhHHHHHHHhcCCC
Confidence 3467888888888665 6789999999988888887888765 788999999999999999999998754
Q ss_pred c---cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 174 I---DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 174 ~---~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
. .+|.+|.+.+.|+|++.++.||.||..|++..+.|+--|+.|.|+...+-++
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~ 832 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVL 832 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeee
Confidence 3 3679999999999999999999999999999999999999999987666554
No 148
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.33 E-value=8.6e-07 Score=79.50 Aligned_cols=126 Identities=19% Similarity=0.162 Sum_probs=92.6
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
..+.....|+.++.+-+... .+.|+||-+.+.+.++.+.+.|.+. ++...++...-...+-..+.+.-
T Consensus 406 ~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~----------~i~h~VLNAk~h~~EA~Iia~AG 475 (822)
T COG0653 406 LVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKA----------GIPHNVLNAKNHAREAEIIAQAG 475 (822)
T ss_pred ccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhc----------CCCceeeccccHHHHHHHHhhcC
Confidence 34555667888888766544 7889999999999999999999987 77777777766644444444433
Q ss_pred HcCCccEEEEcCccccccCcCCCc-----------EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 170 RRRKIDLVVASDNLARGIDVENID-----------VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~v~-----------~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
+.| -|-|||++++||-|+.--. +||-...-.|..---|-.||+||.|..|.+..|++-
T Consensus 476 ~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 476 QPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred CCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 333 3789999999999985222 355444455555555999999999999988777653
No 149
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.31 E-value=9.7e-06 Score=73.11 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=73.2
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH---------------------HHHHHHHHHHc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD---------------------QRNKIIQEFRR 171 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~---------------------~r~~~~~~f~~ 171 (231)
+.+++|||.++..|..+++.|.+..+.. .+.....+++..... ....++++|+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~-----~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~ 588 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEK-----FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK 588 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccc-----cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC
Confidence 4799999999999999999987763311 012334444433221 23478889976
Q ss_pred -CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 172 -RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 172 -~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
+..+|||+++.+..|.|.|.+++++....-. ...++|++||+-|.
T Consensus 589 ~~~~~ilIVvdmllTGFDaP~l~tLyldKplk-~h~LlQai~R~nR~ 634 (667)
T TIGR00348 589 EENPKLLIVVDMLLTGFDAPILNTLYLDKPLK-YHGLLQAIARTNRI 634 (667)
T ss_pred CCCceEEEEEcccccccCCCccceEEEecccc-ccHHHHHHHHhccc
Confidence 6789999999999999999999877655444 45689999999994
No 150
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.31 E-value=2.9e-06 Score=75.54 Aligned_cols=98 Identities=16% Similarity=0.219 Sum_probs=78.5
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--CCccEEEEcCccccccCcC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--RKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~ 190 (231)
..++||||.+...|+.+.+.|...++. ..+--+..+.|+..+. ...++.|.. .--+|.++.+++.-|||+|
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype-----~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvp 498 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE-----YNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVP 498 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc-----ccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCch
Confidence 468999999999999999999887553 1234567777765533 445666655 3345888899999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 191 NIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 191 ~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
.|-+++.+..-.|...|.||+||+-|.
T Consensus 499 ev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 499 EVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred heeeeeehhhhhhHHHHHHHhcCcccc
Confidence 999999999999999999999998774
No 151
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.31 E-value=5e-05 Score=67.48 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC----CccEEE
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR----KIDLVV 178 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~----~~~vlv 178 (231)
.+..++.. .+++++|-+.|....+.+++.|...+ . ....++|..+ .+...+++|+.. .-.||+
T Consensus 461 ~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l---------~-~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~ 527 (636)
T TIGR03117 461 STAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI---------P-AEIVIQSEKN--RLASAEQQFLALYANGIQPVLI 527 (636)
T ss_pred HHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc---------C-CCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEE
Confidence 34444443 44589999999999999999997642 1 3345566543 456788999874 688999
Q ss_pred EcCccccccCc--------C--CCcEEEEecCCCC-------------------------HHHHHHHhcccccCCCC--c
Q psy9509 179 ASDNLARGIDV--------E--NIDVVINYEAPDN-------------------------IKKYIHRIGRTARGGRQ--G 221 (231)
Q Consensus 179 ~T~~~~~Gidi--------~--~v~~vi~~~~p~~-------------------------~~~~~qr~GR~gR~g~~--g 221 (231)
+|+.+..|||+ | .+++||....|.. .-.+.|-+||.=|.... .
T Consensus 528 gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~ 607 (636)
T TIGR03117 528 AAGGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQN 607 (636)
T ss_pred eCCccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCc
Confidence 99999999999 2 4778888777731 33456788888887554 3
Q ss_pred eEEEEee
Q psy9509 222 TSVTLVT 228 (231)
Q Consensus 222 ~~~~~~~ 228 (231)
-++.+++
T Consensus 608 G~i~ilD 614 (636)
T TIGR03117 608 RRIHMLD 614 (636)
T ss_pred eEEEEEe
Confidence 3444444
No 152
>KOG1002|consensus
Probab=98.30 E-value=3.9e-06 Score=70.82 Aligned_cols=123 Identities=11% Similarity=0.056 Sum_probs=101.8
Q ss_pred CCCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 96 STNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..+.|+++|.+-+... ..-+.|||..-....+.+.-.|.+. |+.+..+.|+|++..|...++.|+.
T Consensus 617 qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ka----------GfscVkL~GsMs~~ardatik~F~n 686 (791)
T KOG1002|consen 617 QSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKA----------GFSCVKLVGSMSPAARDATIKYFKN 686 (791)
T ss_pred cchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhcc----------CceEEEeccCCChHHHHHHHHHhcc
Confidence 3466888888755433 3457899999988888888888877 9999999999999999999999988
Q ss_pred CC-cc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCC--CceEEEEee
Q psy9509 172 RK-ID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR--QGTSVTLVT 228 (231)
Q Consensus 172 ~~-~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~--~g~~~~~~~ 228 (231)
.- +. .|++-.+++..+|+....+|++.|+.|+++--.|.-.|..|.|+ .-.++.|+-
T Consensus 687 d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~i 747 (791)
T KOG1002|consen 687 DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCI 747 (791)
T ss_pred CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeeh
Confidence 53 44 55778999999999999999999999999999999999999886 345555543
No 153
>KOG4439|consensus
Probab=98.19 E-value=1.8e-05 Score=69.38 Aligned_cols=125 Identities=10% Similarity=0.093 Sum_probs=98.5
Q ss_pred eeecCCCChHHHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
|.......|+..++..+... ...+++|...=.....-+...|++. +.....+||.....+|..+++.
T Consensus 722 Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~----------g~~y~si~Gqv~vK~Rq~iv~~ 791 (901)
T KOG4439|consen 722 FEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKG----------GHIYTSITGQVLVKDRQEIVDE 791 (901)
T ss_pred cccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhC----------CeeeeeecCccchhHHHHHHHH
Confidence 44444566777777666544 4456666555555556666777766 8889999999999999999999
Q ss_pred HHc--CCccEE-EEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 169 FRR--RKIDLV-VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 169 f~~--~~~~vl-v~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
|.. |..+|+ ++-.+.+.|+|+-+.+|+|.+|..|++.--.|.+.|.-|.|++..+++.
T Consensus 792 FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 792 FNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred HHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 975 445555 6668999999999999999999999999999999999999988776653
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=97.83 E-value=1.1e-05 Score=72.34 Aligned_cols=105 Identities=18% Similarity=0.369 Sum_probs=77.8
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccc---cccC--CCCcccEEEEcCCCCHHHHHHHHH---HHHcCCccEEEEcCcccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNV---ATKG--AGTKMNIAEVYSDLKFDQRNKIIQ---EFRRRKIDLVVASDNLAR 185 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~---~~~~--~~~~~~~~~~h~~~~~~~r~~~~~---~f~~~~~~vlv~T~~~~~ 185 (231)
.|.|-||.+.+....+++.+....+. .... ....+.+..+.|.|...+|.+.+. .|...+.+||---.++..
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 47889999999888888777554111 1111 122344555668888888854433 234567778877789999
Q ss_pred ccCcCCCcEEEEecCCCCHHHHHHHhcccccCC
Q psy9509 186 GIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218 (231)
Q Consensus 186 Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g 218 (231)
|+|+|..+.||.++...+.-..+|.+||.-|..
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999963
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.83 E-value=0.00011 Score=67.91 Aligned_cols=97 Identities=19% Similarity=0.182 Sum_probs=71.0
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH----------------------Hc--
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF----------------------RR-- 171 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f----------------------~~-- 171 (231)
.+|=++++..+-.+|..|-.... ..+..+.+.+|||..+...|..+++.. +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~----~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~ 834 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLA----EEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSP 834 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhcc----ccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhccc
Confidence 37777788888888887766522 112356688899999888777776554 11
Q ss_pred --CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCC
Q psy9509 172 --RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 172 --~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
+...|+|+|++.|.|+|+. .+.+ +--|.+..+.+|++||+.|.+.
T Consensus 835 ~~~~~~i~v~Tqv~E~g~D~d-fd~~--~~~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 835 ALNHLFIVLATPVEEVGRDHD-YDWA--IADPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred ccCCCeEEEEeeeEEEEeccc-CCee--eeccCcHHHHHHHhhccccccc
Confidence 3456899999999999973 3333 3557889999999999999874
No 156
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.69 E-value=0.00076 Score=48.68 Aligned_cols=72 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHcCCc-cEEEEcCccccccCcCCC--cEEEEecCCCC------------------------------
Q psy9509 157 LKFDQRNKIIQEFRRRKI-DLVVASDNLARGIDVENI--DVVINYEAPDN------------------------------ 203 (231)
Q Consensus 157 ~~~~~r~~~~~~f~~~~~-~vlv~T~~~~~Gidi~~v--~~vi~~~~p~~------------------------------ 203 (231)
....+...++++|+...- .||+++.-+.+|+|+|+- ++||..+.|..
T Consensus 31 ~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (141)
T smart00492 31 EDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLPD 110 (141)
T ss_pred CChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHHH
Confidence 444467889999987543 699999889999999864 57888887731
Q ss_pred -HHHHHHHhcccccCCCCceEEEEee
Q psy9509 204 -IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 204 -~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
.....|.+||+-|..+.--++++++
T Consensus 111 a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 111 AMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHhCccccCcCceEEEEEEe
Confidence 2344588899999765544555544
No 157
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.66 E-value=0.0006 Score=49.29 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCc---cEEEEcCc--cccccCcCC--CcEEEEecCCCC------------------------------
Q psy9509 161 QRNKIIQEFRRRKI---DLVVASDN--LARGIDVEN--IDVVINYEAPDN------------------------------ 203 (231)
Q Consensus 161 ~r~~~~~~f~~~~~---~vlv~T~~--~~~Gidi~~--v~~vi~~~~p~~------------------------------ 203 (231)
+...++++|+...- .||+++.- +.+|||+|+ +++||..+.|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44688888887543 58888876 999999996 467888887731
Q ss_pred -HHHHHHHhcccccCCCCceEEEEeec
Q psy9509 204 -IKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 204 -~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
.....|.+||+=|..+.--+++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 23445888999998655445555543
No 158
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.61 E-value=0.00047 Score=63.16 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCChHHHHHHHHHhc-----------CCCcEEEEEcchHHHHHHHHHHhh
Q psy9509 96 STNLKPLVLYQLIRKH-----------AMQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~-----------~~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
+..-|+..|.++|++. .+.++||||+....|.++.+.|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 3567889888888552 246799999999999999998865
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.49 E-value=0.0028 Score=57.40 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 103 VLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 103 ~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
..-.++... .++++-||++|...++.+++..+.. ...+..++|..+.. .+ +. =++.+|++=|+
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~----------~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~ 334 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARF----------TKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTP 334 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhc----------CCeEEEEcCCCCcc---cc-cc--ccceeEEEEec
Confidence 333444444 5677889999999999998888776 66777887765543 22 22 25578999999
Q ss_pred ccccccCcCCCcE--EEEecCC----CCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 182 NLARGIDVENIDV--VINYEAP----DNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 182 ~~~~Gidi~~v~~--vi~~~~p----~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
++..|+++....+ ++-|=-| .+..+..|++||.... .....+++++
T Consensus 335 ~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d 386 (824)
T PF02399_consen 335 VITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYID 386 (824)
T ss_pred eEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEe
Confidence 9999999976544 3333112 3456788999999655 3556666655
No 160
>KOG1016|consensus
Probab=97.47 E-value=0.00037 Score=62.15 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=89.5
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccC--------CCCcccEEEEcCCCCHHHHHHHHHHHHcC--C-ccEEEEc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKG--------AGTKMNIAEVYSDLKFDQRNKIIQEFRRR--K-IDLVVAS 180 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~--------~~~~~~~~~~h~~~~~~~r~~~~~~f~~~--~-~~vlv~T 180 (231)
.+.++|||..+....+.+.+.|.+..-.-..+ +..+.....+.|..+..+|++.+.+|.+. - .-++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 45789999999988888888887652111111 11112234567888999999999999873 2 2477899
Q ss_pred CccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 181 DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 181 ~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
.+...|||+-..+.++.||..|.+.--.|.+-|.-|.|++..|+++
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvY 843 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVY 843 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEE
Confidence 9999999999999999999999999999999999999998887775
No 161
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.43 E-value=0.00068 Score=54.21 Aligned_cols=65 Identities=26% Similarity=0.312 Sum_probs=52.8
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCC--------cEEEEecCCCCHHHHHHHhcccccCCCC-ceEEEEe
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENI--------DVVINYEAPDNIKKYIHRIGRTARGGRQ-GTSVTLV 227 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v--------~~vi~~~~p~~~~~~~qr~GR~gR~g~~-g~~~~~~ 227 (231)
....+.|.+|+..|+|.|++++.||.+..- .+-|.+.+||+....+|..||+.|.|+. .-.|.++
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l 124 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFL 124 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEe
Confidence 356789999999999999999999988643 3456789999999999999999999873 3334443
No 162
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.14 E-value=0.0037 Score=56.41 Aligned_cols=94 Identities=18% Similarity=0.155 Sum_probs=73.6
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
.+.|.+...+++... .++++||.++....+.++.+.|+..++ ...+..+|+++++.+|.+...+.+.|+.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--------~~~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--------AGDVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--------CCcEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 457888788777655 678999999999999999999998752 3569999999999999999999999999
Q ss_pred cEEEEcCccccccCcCCCcEEEEec
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYE 199 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~ 199 (231)
+|+|.|..+.. .=+++...||..+
T Consensus 242 ~IViGtRSAvF-aP~~~LgLIIvdE 265 (665)
T PRK14873 242 RVVVGTRSAVF-APVEDLGLVAIWD 265 (665)
T ss_pred cEEEEcceeEE-eccCCCCEEEEEc
Confidence 99999964322 1122444455444
No 163
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.11 E-value=0.0066 Score=55.19 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
...|.......+... .+.++||.+++++.+.++++.+++.+ +..+..+||+++..+|.+...+...|..
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f---------g~~v~~~~s~~s~~~r~~~~~~~~~g~~ 242 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF---------GAPVAVLHSGLSDGERLDEWRKAKRGEA 242 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh---------CCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 456766655544332 46789999999999999999998753 4679999999999999999999999999
Q ss_pred cEEEEcCccccccCcCCCcEEEEec
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYE 199 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~ 199 (231)
+|+|+|..... ..+.++..||...
T Consensus 243 ~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 243 KVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CEEEeccHHhc-ccccCCCEEEEEC
Confidence 99999974322 4455677766544
No 164
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.07 E-value=0.0058 Score=53.58 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=69.3
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..|.+....++... .++++||.++++..+.++++.|++.+ +..+..+||+++..+|.+...+...|..+
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f---------~~~v~vlhs~~~~~er~~~~~~~~~g~~~ 78 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF---------GSQVAVLHSGLSDSEKLQAWRKVKNGEIL 78 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh---------CCcEEEEECCCCHHHHHHHHHHHHcCCCC
Confidence 45655555444332 56789999999999999999998763 45688999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEe
Q psy9509 176 LVVASDNLARGIDVENIDVVINY 198 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~ 198 (231)
|+|+|..+-. .-++++..||.-
T Consensus 79 IVVGTrsalf-~p~~~l~lIIVD 100 (505)
T TIGR00595 79 VVIGTRSALF-LPFKNLGLIIVD 100 (505)
T ss_pred EEECChHHHc-CcccCCCEEEEE
Confidence 9999965332 345566666643
No 165
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=96.97 E-value=0.0073 Score=54.98 Aligned_cols=80 Identities=18% Similarity=0.217 Sum_probs=67.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-cccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-LARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~ 190 (231)
.+.+++|.++|+.-|.+.++.+++.++. .++.+..+||+++..+|..+++.+..|..+|+|+|.. +...+.+.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~------~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~ 382 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP------LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFH 382 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh------cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhc
Confidence 5678999999999999999999876421 1578999999999999999999999999999999974 44456778
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
++.+||.
T Consensus 383 ~l~lvVI 389 (681)
T PRK10917 383 NLGLVII 389 (681)
T ss_pred ccceEEE
Confidence 8887664
No 166
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.96 E-value=0.0044 Score=55.90 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC----ccccccCcCCCcEEEEecC
Q psy9509 125 GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD----NLARGIDVENIDVVINYEA 200 (231)
Q Consensus 125 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~----~~~~Gidi~~v~~vi~~~~ 200 (231)
-++++.+.|.+.++ +.++..+.+ +.++++|. ++.+|||+|+ +++ ++++.|+.+|.
T Consensus 439 Gter~eeeL~~~FP--------~~~V~r~d~-------d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ilda 497 (665)
T PRK14873 439 GARRTAEELGRAFP--------GVPVVTSGG-------DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDA 497 (665)
T ss_pred cHHHHHHHHHHHCC--------CCCEEEECh-------HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcc
Confidence 36777777777765 556665443 34788896 5999999998 555 35677666554
Q ss_pred C------C------CHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 201 P------D------NIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 201 p------~------~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
. + ....+.|-+||+||.+..|.+++..++
T Consensus 498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~p 538 (665)
T PRK14873 498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAES 538 (665)
T ss_pred hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeCC
Confidence 3 1 355667899999998888999887544
No 167
>KOG0921|consensus
Probab=96.90 E-value=0.0013 Score=59.73 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=85.3
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
.+-+++|.+--...-.|...|...- --+....+.+...|+-....+..++.+....|..+++++|.+++-.+-+.++
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~---~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~ 719 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQ---EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDV 719 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhh---hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecce
Confidence 3568899999998888888876541 1112236788899999999999999999999999999999999999999888
Q ss_pred cEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEE
Q psy9509 193 DVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 193 ~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
.+|++.+. ..+..+..||.||+||. +.|.|..+
T Consensus 720 v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~l 770 (1282)
T KOG0921|consen 720 VYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHL 770 (1282)
T ss_pred eEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccc
Confidence 77776443 23667788999999986 45655443
No 168
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.80 E-value=0.0074 Score=55.78 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
+-++..+.-...++++++.++|.--+.+.++.|++...... .....+. +||.++..+++..+++|.+|..+|||+|
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~---~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitT 188 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAG---SLDVLVV-YHSALPTKEKEEALERIESGDFDILITT 188 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcC---Ccceeee-eccccchHHHHHHHHHHhcCCccEEEEe
Confidence 45666677677789999999999999999999988732211 1234444 9999999999999999999999999999
Q ss_pred Cc
Q psy9509 181 DN 182 (231)
Q Consensus 181 ~~ 182 (231)
+.
T Consensus 189 s~ 190 (1187)
T COG1110 189 SQ 190 (1187)
T ss_pred HH
Confidence 75
No 169
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=96.64 E-value=0.0075 Score=54.64 Aligned_cols=80 Identities=19% Similarity=0.155 Sum_probs=71.4
Q ss_pred ecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 94 TCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
-+..+.|.+...+++.+. .++++||-++....+.++.+.++..+ +..+..+||++++.+|...-.+.+.
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF---------g~~v~vlHS~Ls~~er~~~W~~~~~ 294 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF---------GAKVAVLHSGLSPGERYRVWRRARR 294 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh---------CCChhhhcccCChHHHHHHHHHHhc
Confidence 355688999999988765 78899999999999999999998875 5789999999999999999999999
Q ss_pred CCccEEEEcCc
Q psy9509 172 RKIDLVVASDN 182 (231)
Q Consensus 172 ~~~~vlv~T~~ 182 (231)
|+.+|+|.|-.
T Consensus 295 G~~~vVIGtRS 305 (730)
T COG1198 295 GEARVVIGTRS 305 (730)
T ss_pred CCceEEEEech
Confidence 99999999854
No 170
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.60 E-value=0.016 Score=52.37 Aligned_cols=94 Identities=19% Similarity=0.213 Sum_probs=71.5
Q ss_pred CChHH-HHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPL-VLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~-~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..|.. ++..++... .+.+++|.++|+.-|.+.++.+++.++. .++.+..+||+++..+|...++....|+.+
T Consensus 267 SGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~------~gi~v~lltg~~~~~~r~~~~~~i~~g~~~ 340 (630)
T TIGR00643 267 SGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAP------LGIEVALLTGSLKGKRRKELLETIASGQIH 340 (630)
T ss_pred CcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcc------cCcEEEEEecCCCHHHHHHHHHHHhCCCCC
Confidence 44543 333333332 5678999999999999999998876431 157899999999999999999999999999
Q ss_pred EEEEcCcc-ccccCcCCCcEEEE
Q psy9509 176 LVVASDNL-ARGIDVENIDVVIN 197 (231)
Q Consensus 176 vlv~T~~~-~~Gidi~~v~~vi~ 197 (231)
|+|+|... ...+.+.++.+||.
T Consensus 341 IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 341 LVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EEEecHHHHhccccccccceEEE
Confidence 99999753 34566777777664
No 171
>KOG1001|consensus
Probab=96.58 E-value=0.00047 Score=61.88 Aligned_cols=119 Identities=12% Similarity=0.112 Sum_probs=98.1
Q ss_pred CCChHHHHHHHHHhc--CC-CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 97 TNLKPLVLYQLIRKH--AM-QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~-~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
...|+..+.+.+... .. .+++||+.-..-+..+...|... +.....+.|.|+...|.+.+..|..+.
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~----------~~~~~~~~g~~~~~~r~~s~~~~~~~~ 589 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFK----------GFVFLRYDGEMLMKIRTKSFTDFPCDP 589 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhc----------ccccchhhhhhHHHHHHhhhcccccCc
Confidence 456777777777543 22 38999999988887777777644 778888999999999999999998654
Q ss_pred -ccE-EEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 174 -IDL-VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 174 -~~v-lv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
..+ +++..+++.|+|+..+++|+..|+.|++..--|.+-|+.|.|+...+.+
T Consensus 590 ~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 590 LVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 344 4788999999999999999999999999999999999999998766655
No 172
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.43 E-value=0.027 Score=52.90 Aligned_cols=80 Identities=16% Similarity=0.196 Sum_probs=65.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-ccccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-NLARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~ 190 (231)
.+.+++|.++|+.-|.+.++.+++.+.. .++.+..++|..+..++.+++++++.|+.+|+|+|. .+...+.+.
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~------~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~ 572 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFAN------FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFK 572 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhcc------CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcc
Confidence 5678999999999999999999876431 146788899999999999999999999999999996 444556777
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
++.++|.
T Consensus 573 ~L~llVI 579 (926)
T TIGR00580 573 DLGLLII 579 (926)
T ss_pred cCCEEEe
Confidence 7777664
No 173
>KOG0701|consensus
Probab=96.37 E-value=0.0026 Score=61.57 Aligned_cols=95 Identities=22% Similarity=0.376 Sum_probs=77.0
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCH-----------HHHHHHHHHHHcCCccEEEEcCc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF-----------DQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~-----------~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
-..++|++.+..+..+.+++++... ..+..+.|.+.+ ..+.+++..|.....++|++|.+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~ 363 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFS---------NDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSV 363 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhc---------cCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHH
Confidence 3578999999999999999887621 122223333211 23678899999999999999999
Q ss_pred cccccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 183 ~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
+..|+|++.++.++.++.|....+|+|..||+-+.
T Consensus 364 ~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 364 LEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred HHhhcchhhhhhheeccCcchHHHHHHhhcccccc
Confidence 99999999999999999999999999999999654
No 174
>PRK10689 transcription-repair coupling factor; Provisional
Probab=95.68 E-value=0.061 Score=51.75 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=64.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-cccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-LARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~ 190 (231)
.+.+++|.++|+.-|.+.++.+++.+.. .++.+..++|..+..++.++++.++.|..+|+|+|.. +...+.+.
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~------~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~ 721 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN------WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWK 721 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc------CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHh
Confidence 5678999999999999999999875321 1457788999999999999999999999999999963 44446666
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
++.++|.
T Consensus 722 ~L~lLVI 728 (1147)
T PRK10689 722 DLGLLIV 728 (1147)
T ss_pred hCCEEEE
Confidence 7776553
No 175
>PRK14701 reverse gyrase; Provisional
Probab=95.32 E-value=0.12 Score=51.45 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
.+.+++|.++|++-+.++++.++.... ..+.+..+..+||+++..++.+.++.++.|..+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~----~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCE----KANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHh----hcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 566899999999999999999987521 1112467889999999999999999999999999999975
No 176
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.17 E-value=0.19 Score=44.95 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred HHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 101 PLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 101 ~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
+.++...+... .+.++....+|.=-|++.+..+.+.++. .++++..+.|++...+|.+++++..+|.++++|.
T Consensus 298 vVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~------~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVG 371 (677)
T COG1200 298 VVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEP------LGIRVALLTGSLKGKARKEILEQLASGEIDIVVG 371 (677)
T ss_pred HHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhh------cCCeEEEeecccchhHHHHHHHHHhCCCCCEEEE
Confidence 44455555443 6789999999998899888888877432 2688999999999999999999999999999999
Q ss_pred cCc-cccccCcCCCcEEEE
Q psy9509 180 SDN-LARGIDVENIDVVIN 197 (231)
Q Consensus 180 T~~-~~~Gidi~~v~~vi~ 197 (231)
|-+ +...+++.+...||.
T Consensus 372 THALiQd~V~F~~LgLVIi 390 (677)
T COG1200 372 THALIQDKVEFHNLGLVII 390 (677)
T ss_pred cchhhhcceeecceeEEEE
Confidence 976 556788887777663
No 177
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=95.03 E-value=0.18 Score=44.54 Aligned_cols=73 Identities=22% Similarity=0.435 Sum_probs=55.6
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc-cCc
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG-IDV 189 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G-idi 189 (231)
+||.++|++-|.++++.+...-... .+..+..++|+.+...+. ++++.| .+|+|||+- +.++ +|+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~-----~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l 172 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNL-----GGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDL 172 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhc-----CCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcch
Confidence 9999999999999999998762100 046689999999876665 444446 999999974 6666 788
Q ss_pred CCCcEEEE
Q psy9509 190 ENIDVVIN 197 (231)
Q Consensus 190 ~~v~~vi~ 197 (231)
..+.++|.
T Consensus 173 ~~v~~lVl 180 (513)
T COG0513 173 SGVETLVL 180 (513)
T ss_pred hhcCEEEe
Confidence 88887664
No 178
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=94.76 E-value=0.24 Score=47.99 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=53.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc---EEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN---IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
.+.+++|.++|++-+.++++.++..... .++. +..+||+++..++....+.++.|..+|+|+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~------~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEK------AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHh------cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 4678999999999999999999876321 0222 446899999999999999999999999999974
No 179
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.74 E-value=0.29 Score=46.50 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=68.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc-CccccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS-DNLARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T-~~~~~Gidi~ 190 (231)
+++++.|.|+|.--|++-++.+++.+. +-.+.+..+..-.+.++..+++++.++|+++|+|.| ..+..+|-+.
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~------~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk 715 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFA------GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK 715 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhc------CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe
Confidence 567999999999999999999988753 124667888888899999999999999999999999 5788888888
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
+...+|.
T Consensus 716 dLGLlII 722 (1139)
T COG1197 716 DLGLLII 722 (1139)
T ss_pred cCCeEEE
Confidence 8887664
No 180
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.70 E-value=0.085 Score=41.63 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC----ccEEEEcCccccccCcCCCcEEEEe
Q psy9509 123 AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK----IDLVVASDNLARGIDVENIDVVINY 198 (231)
Q Consensus 123 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~----~~vlv~T~~~~~Gidi~~v~~vi~~ 198 (231)
...-+++...|..... .+..+..++|+.+... -.|..+. ..|+|+=+.++||+-+++..+....
T Consensus 93 ~~s~~ei~~~l~~~~~-------~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~ 160 (239)
T PF10593_consen 93 PPSWEEIKPELPKAIS-------DGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFL 160 (239)
T ss_pred CcCHHHHHHHHHHHHh-------cCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEec
Confidence 3344455555554422 0377888887665433 4444443 6788999999999999999999999
Q ss_pred cCCCCHHHHHHHhcccc-cCCCCceEEEEeec
Q psy9509 199 EAPDNIKKYIHRIGRTA-RGGRQGTSVTLVTT 229 (231)
Q Consensus 199 ~~p~~~~~~~qr~GR~g-R~g~~g~~~~~~~~ 229 (231)
..+....+++||.-..| |.|-...|=++.++
T Consensus 161 R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~ 192 (239)
T PF10593_consen 161 RNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPE 192 (239)
T ss_pred CCCchHHHHHHHhhcccCCcccccceEEecCH
Confidence 98998999999976666 66767777777654
No 181
>KOG0951|consensus
Probab=94.24 E-value=0.35 Score=46.35 Aligned_cols=113 Identities=17% Similarity=0.246 Sum_probs=73.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhcccc--------ccCC----CCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVA--------TKGA----GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~--------~~~~----~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
.+++.+||+++++.|..++.-+-...-.+ .+.. .....+..-|-+++..+...+-+-|..|.+.|+|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~ 1437 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVM 1437 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEE
Confidence 57899999999999888776553320000 0000 01122222288899999999999999999999887
Q ss_pred cCccccccCcCCCcEEEE-----ecC------CCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 180 SDNLARGIDVENIDVVIN-----YEA------PDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 180 T~~~~~Gidi~~v~~vi~-----~~~------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
..- -.|+-... +.|+- ||. +-+.+...|+.|++.| .|.|+++...
T Consensus 1438 s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~ 1493 (1674)
T KOG0951|consen 1438 SRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHT 1493 (1674)
T ss_pred Ecc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecC
Confidence 655 55555432 23332 222 3357889999999987 6777777654
No 182
>KOG1513|consensus
Probab=94.08 E-value=0.055 Score=49.11 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=46.6
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEE--------EecCCCCHHHHHHHhcccccCCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVI--------NYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi--------~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
-++|-+|+-.|-|-+.+++-||-++.-..|+ -+.+|||...-+|+.||+.|..+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQ 911 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQ 911 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccc
Confidence 4678899988888899999999998765554 48899999999999999999875
No 183
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.18 E-value=0.65 Score=42.10 Aligned_cols=77 Identities=17% Similarity=0.327 Sum_probs=52.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----cccc-
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLAR- 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~- 185 (231)
...++||.|+|++-+.++++.+...... ..+..+..+||+.+...+...+ .+..+|+|+|+ .+.+
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~-----~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~ 143 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKH-----MRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRG 143 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhh-----cCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcC
Confidence 4458999999999999999888765211 1157788899988765443332 24578999995 2333
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+++.++.++|.
T Consensus 144 ~l~l~~l~~lVl 155 (629)
T PRK11634 144 TLDLSKLSGLVL 155 (629)
T ss_pred CcchhhceEEEe
Confidence 367777777663
No 184
>KOG0347|consensus
Probab=92.94 E-value=0.31 Score=42.63 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=47.7
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.||+++|++-|.++...|...-+ ..++.+..+.||++...+.+++.+ .-.|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~------~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE------KTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc------ccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 89999999999999999977622 238999999999998888888877 667999996
No 185
>KOG2340|consensus
Probab=92.76 E-value=0.22 Score=43.37 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=76.2
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc--cccccCcCC
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN--LARGIDVEN 191 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~--~~~Gidi~~ 191 (231)
.-++||.++--.--++..++++. .+....+|--.+...-.+.-+-|.+|...+|+-|.= .-+--++.+
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e----------~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikG 622 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE----------EISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKG 622 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh----------hcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecc
Confidence 35799999999988888888876 433333333334444456667788999999998863 456678899
Q ss_pred CcEEEEecCCCCHH---HHHHHhcccccCC----CCceEEEEeecC
Q psy9509 192 IDVVINYEAPDNIK---KYIHRIGRTARGG----RQGTSVTLVTTH 230 (231)
Q Consensus 192 v~~vi~~~~p~~~~---~~~qr~GR~gR~g----~~g~~~~~~~~~ 230 (231)
|..||.|.+|..+. .++.+.+|+.-.| ..-.|.+++++-
T Consensus 623 Vk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKy 668 (698)
T KOG2340|consen 623 VKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKY 668 (698)
T ss_pred eeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeech
Confidence 99999999998764 4456777765444 345666666653
No 186
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.73 E-value=0.54 Score=41.01 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
++.+||.+++++-+...+..|+.. ++.+..++|+.+..++..++.+...|..+++++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~----------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS----------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 467999999999998888888766 788899999999999999999999999999999863
No 187
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=92.44 E-value=1.4 Score=33.31 Aligned_cols=76 Identities=20% Similarity=0.367 Sum_probs=52.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG 186 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G 186 (231)
.+.++||.+++++.+.+.++.+...... .+..+..++|+.+..+.....+ +...|+|+|.. +..+
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~ 137 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH------TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERG 137 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc------CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcC
Confidence 4568999999999999988887765211 2567788999888665543332 66789999952 2222
Q ss_pred -cCcCCCcEEEE
Q psy9509 187 -IDVENIDVVIN 197 (231)
Q Consensus 187 -idi~~v~~vi~ 197 (231)
.+++++.++|.
T Consensus 138 ~~~~~~l~~lIv 149 (203)
T cd00268 138 KLDLSKVKYLVL 149 (203)
T ss_pred CCChhhCCEEEE
Confidence 56677777664
No 188
>KOG0330|consensus
Probab=91.81 E-value=1.4 Score=37.06 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
.|-.++.+.....++|.++|++-|.++++.++.. +...+.++..+-|+++... +..+. ..+..|||||+=
T Consensus 119 Il~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~L------g~~iglr~~~lvGG~~m~~--q~~~L--~kkPhilVaTPG 188 (476)
T KOG0330|consen 119 ILQRLLQEPKLFFALVLTPTRELAQQIAEQFEAL------GSGIGLRVAVLVGGMDMML--QANQL--SKKPHILVATPG 188 (476)
T ss_pred HHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHh------ccccCeEEEEEecCchHHH--HHHHh--hcCCCEEEeCcH
Confidence 3444555556678999999999999999988765 2233788999999987332 22222 345678999963
Q ss_pred -----c--ccccCcCCCcE
Q psy9509 183 -----L--ARGIDVENIDV 194 (231)
Q Consensus 183 -----~--~~Gidi~~v~~ 194 (231)
+ -.|..+..+.+
T Consensus 189 rL~dhl~~Tkgf~le~lk~ 207 (476)
T KOG0330|consen 189 RLWDHLENTKGFSLEQLKF 207 (476)
T ss_pred HHHHHHHhccCccHHHhHH
Confidence 1 34555554444
No 189
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=91.74 E-value=0.88 Score=40.96 Aligned_cols=60 Identities=10% Similarity=0.047 Sum_probs=53.4
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
++.++|.+++++-++.-+..|+.. ++.+..+||+.+..++..+++....|..+++++|+.
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA----------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 457899999999998888888876 788999999999999999999999999999988854
No 190
>PRK09401 reverse gyrase; Reviewed
Probab=91.54 E-value=1.3 Score=43.16 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=49.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.+++|.++|++-+.++++.++..... ......+...|++++..++.+..+.++.|..+|+|+|+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~----~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp 187 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEK----VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS 187 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhh----cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH
Confidence 5678999999999999999999876221 01122334445666677888888999999999999995
No 191
>KOG0331|consensus
Probab=90.63 E-value=1.5 Score=38.42 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=66.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G- 186 (231)
+..+||-++|++.|.++.+.+.+.-. .....+.+++|+.+...+..-++ ..+.|+|||+ .++.|
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~------~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~ 234 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGK------SLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGS 234 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcC------CCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCC
Confidence 56799999999999999999887621 11466899999988655443322 3477999985 46666
Q ss_pred cCcCCCcEEEE--------ecCCCCHHHHHHHhccccc
Q psy9509 187 IDVENIDVVIN--------YEAPDNIKKYIHRIGRTAR 216 (231)
Q Consensus 187 idi~~v~~vi~--------~~~p~~~~~~~qr~GR~gR 216 (231)
+|+..+.+++. .++-......+++++|.-|
T Consensus 235 ~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 235 LNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred ccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 77778888663 3333456677777777655
No 192
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=90.22 E-value=5.5 Score=28.87 Aligned_cols=76 Identities=13% Similarity=0.234 Sum_probs=52.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH-HHHHHHHHHHcCCccEEEEcCc-----cc-
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD-QRNKIIQEFRRRKIDLVVASDN-----LA- 184 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~-~r~~~~~~f~~~~~~vlv~T~~-----~~- 184 (231)
...++++.+++++.++..++.+...... .+..+..+|++.+.. +....+ .+..+|+|+|.. ..
T Consensus 43 ~~~~~lii~P~~~l~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~~~l~~~~~~ 112 (169)
T PF00270_consen 43 KDARVLIIVPTRALAEQQFERLRKFFSN------TNVRVVLLHGGQSISEDQREVL----SNQADILVTTPEQLLDLISN 112 (169)
T ss_dssp SSSEEEEEESSHHHHHHHHHHHHHHTTT------TTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEHHHHHHHHHT
T ss_pred CCceEEEEeecccccccccccccccccc------cccccccccccccccccccccc----cccccccccCcchhhccccc
Confidence 3458999999999999999999877321 246788889988744 222223 677889999853 11
Q ss_pred cccCcCCCcEEEE
Q psy9509 185 RGIDVENIDVVIN 197 (231)
Q Consensus 185 ~Gidi~~v~~vi~ 197 (231)
..+++..++++|.
T Consensus 113 ~~~~~~~~~~iVi 125 (169)
T PF00270_consen 113 GKINISRLSLIVI 125 (169)
T ss_dssp TSSTGTTESEEEE
T ss_pred cccccccceeecc
Confidence 2245666777664
No 193
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=90.21 E-value=1.7 Score=37.37 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=52.9
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------cccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~G 186 (231)
..++||.++|++-+.++++.+..... ..+..+..++|+.+...+...+ .+..+|+|+|+- ....
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~------~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~Tp~rl~~~~~~~~ 142 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAK------HTHLDIATITGGVAYMNHAEVF----SENQDIVVATPGRLLQYIKEEN 142 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHc------cCCcEEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCC
Confidence 35799999999999998887776521 1256788999998876654333 356789999962 2234
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 143 ~~~~~v~~lVi 153 (434)
T PRK11192 143 FDCRAVETLIL 153 (434)
T ss_pred cCcccCCEEEE
Confidence 56677777664
No 194
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=90.12 E-value=4.5 Score=30.34 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=52.4
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 101 PLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 101 ~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
.+.+..+++.. .+.++.++-.+.+.++.+++.|++.++ +..+...||-.++.+...++++.+....++|+
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP--------~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYP--------KLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCC--------CCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 35555566543 344666677777888999999998866 67766679988888888899999988877664
No 195
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=89.95 E-value=2 Score=37.32 Aligned_cols=75 Identities=9% Similarity=0.250 Sum_probs=53.1
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccc-ccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLA-RGI 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gi 187 (231)
.+++|.++|++-+.++++.++..... ..+..+..++|+.+...+.+.++ +..+|+|+|+ .+. ..+
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~-----~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~ 143 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARF-----IPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTL 143 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhh-----CCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCc
Confidence 47999999999999999888765210 01567888999988766543333 5678999994 222 346
Q ss_pred CcCCCcEEEE
Q psy9509 188 DVENIDVVIN 197 (231)
Q Consensus 188 di~~v~~vi~ 197 (231)
++.++.++|.
T Consensus 144 ~l~~l~~lVi 153 (460)
T PRK11776 144 DLDALNTLVL 153 (460)
T ss_pred cHHHCCEEEE
Confidence 7777887764
No 196
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=89.78 E-value=2.3 Score=37.00 Aligned_cols=74 Identities=11% Similarity=0.238 Sum_probs=51.9
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------ccccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LARGI 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gi 187 (231)
.++||.++|++-|.++++.++.... ..+..+..++|+.+....... + .+..+|+|||.- ....+
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~ 145 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSK------YLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAV 145 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhc------cCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCc
Confidence 3699999999999999998877521 114677788898876554322 2 357789999962 23446
Q ss_pred CcCCCcEEEE
Q psy9509 188 DVENIDVVIN 197 (231)
Q Consensus 188 di~~v~~vi~ 197 (231)
++..+.++|.
T Consensus 146 ~l~~v~~lVi 155 (456)
T PRK10590 146 KLDQVEILVL 155 (456)
T ss_pred ccccceEEEe
Confidence 6777777654
No 197
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=89.15 E-value=1.5 Score=39.27 Aligned_cols=74 Identities=12% Similarity=0.306 Sum_probs=52.0
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----cccc--c
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLAR--G 186 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--G 186 (231)
.++||.++|++.+.++++.+..... ..++.+..+||+.+...+...+ .+..+|||+|. .+.. .
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~------~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~ 154 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGA------DLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKV 154 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhc------cCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccc
Confidence 5899999999999999998876521 1257789999998876554443 34678999995 2222 3
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 155 ~~l~~v~~lVi 165 (572)
T PRK04537 155 VSLHACEICVL 165 (572)
T ss_pred cchhheeeeEe
Confidence 55666666543
No 198
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.68 E-value=2.7 Score=36.13 Aligned_cols=75 Identities=16% Similarity=0.281 Sum_probs=51.1
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----c-ccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----L-ARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~-~~G 186 (231)
+.++||.++|++-|.++++.+..... ..+..+..++|+.+.......+ .+..+|+|+|+- + ...
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~------~~~~~v~~~~gg~~~~~~~~~l----~~~~~IlV~TP~~l~~~l~~~~ 152 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQ------ATGLKLGLAYGGDGYDKQLKVL----ESGVDILIGTTGRLIDYAKQNH 152 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhc------cCCceEEEEECCCCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCC
Confidence 35799999999999999887765421 1257788889987755443322 345789999962 1 234
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 153 ~~l~~v~~lVi 163 (423)
T PRK04837 153 INLGAIQVVVL 163 (423)
T ss_pred cccccccEEEE
Confidence 66777777664
No 199
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=88.49 E-value=6.6 Score=29.21 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=52.4
Q ss_pred HHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEE-EEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 102 LVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA-EVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 102 ~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
+.+..+++.. .+.++-++-.+.+.++.+++.|++.++ +..+. ..||-++..+..++++..+....++|+
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP--------~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~ 106 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYP--------GLRIVGYHHGYFDEEEEEAIINRINASGPDIVF 106 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCC--------CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4444555433 345777777888889999999999866 67766 455667888999999999998888775
Q ss_pred E
Q psy9509 179 A 179 (231)
Q Consensus 179 ~ 179 (231)
.
T Consensus 107 v 107 (172)
T PF03808_consen 107 V 107 (172)
T ss_pred E
Confidence 4
No 200
>KOG0339|consensus
Probab=88.42 E-value=2.7 Score=36.80 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------cccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~G 186 (231)
+.-.+|.|+|++.|.+++...++. . ...++.+..+||+.+.-++..-++ -...++|||+- --.+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf-~-----K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKa 365 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKF-G-----KAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKA 365 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHh-h-----hhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhc
Confidence 334678899999999988776654 1 223788999999999777665444 34568999962 2235
Q ss_pred cCcCCCcEEE
Q psy9509 187 IDVENIDVVI 196 (231)
Q Consensus 187 idi~~v~~vi 196 (231)
+|+..+++.+
T Consensus 366 tn~~rvS~LV 375 (731)
T KOG0339|consen 366 TNLSRVSYLV 375 (731)
T ss_pred ccceeeeEEE
Confidence 6676776644
No 201
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=87.77 E-value=7.3 Score=28.95 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=52.2
Q ss_pred HHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEE-EcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 102 LVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 102 ~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~-~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
+.+..+++.. .+.++.++-.+.+.++.+++.|++.++ +..+.. .|+-+...+...+++..+....++++
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp--------~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~ 104 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYP--------GLKIVGYHHGYFGPEEEEEIIERINASGADILF 104 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCC--------CcEEEEecCCCCChhhHHHHHHHHHHcCCCEEE
Confidence 4455555544 356777788888889999999998866 677665 67878777777799999988888665
Q ss_pred E
Q psy9509 179 A 179 (231)
Q Consensus 179 ~ 179 (231)
.
T Consensus 105 v 105 (171)
T cd06533 105 V 105 (171)
T ss_pred E
Confidence 3
No 202
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=87.59 E-value=2.8 Score=37.95 Aligned_cols=59 Identities=14% Similarity=0.012 Sum_probs=52.2
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.+||.+++++-+......|+.. ++.+..+++..+..++..+++....|..+++++|+
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~----------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP 123 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN----------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP 123 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc----------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh
Confidence 457999999999999888888876 78888999999999999999999999999998884
No 203
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=87.26 E-value=4.8 Score=38.95 Aligned_cols=60 Identities=13% Similarity=0.131 Sum_probs=50.2
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--CCccEEEEcCc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--RKIDLVVASDN 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--~~~~vlv~T~~ 182 (231)
++.+||.+++++-+..-...|... ++.+..+.|+++..++.++++++.. |+.++|++|+-
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~----------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPE 561 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA----------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPE 561 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC----------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChH
Confidence 457999999999987555555554 7889999999999999999999987 89999999973
No 204
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.86 E-value=9.7 Score=34.87 Aligned_cols=113 Identities=13% Similarity=0.115 Sum_probs=76.3
Q ss_pred eeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE------------------
Q psy9509 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV------------------ 153 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~------------------ 153 (231)
+.-+....|...+..++.... .++||.++++..|.+++..|+..++ ...+.++
T Consensus 34 l~Gvtgs~kt~~~a~~~~~~~-~p~Lvi~~n~~~A~ql~~el~~f~p--------~~~V~~f~sy~d~y~pe~y~P~~d~ 104 (655)
T TIGR00631 34 LLGVTGSGKTFTMANVIAQVN-RPTLVIAHNKTLAAQLYNEFKEFFP--------ENAVEYFVSYYDYYQPEAYVPSKDT 104 (655)
T ss_pred EECCCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHhCC--------CCeEEEEeeecccCCccccCCCccc
Confidence 444566778887777776643 5899999999999999999988765 2223333
Q ss_pred -------cCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC----CcEEEEecCCCCHHHHHHHhcc
Q psy9509 154 -------YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN----IDVVINYEAPDNIKKYIHRIGR 213 (231)
Q Consensus 154 -------h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~----v~~vi~~~~p~~~~~~~qr~GR 213 (231)
.+.-....|..++..+..+.-.|+|||-.+-.|+--|. ....+..+-..+...+..+.-.
T Consensus 105 ~~~k~~~~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~Lv~ 175 (655)
T TIGR00631 105 YIEKDASINDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRLVE 175 (655)
T ss_pred cccccCCCChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHHHH
Confidence 11122345788888888776667888755566665443 4556667777777777765543
No 205
>PTZ00110 helicase; Provisional
Probab=86.58 E-value=3.6 Score=36.71 Aligned_cols=75 Identities=13% Similarity=0.207 Sum_probs=51.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G- 186 (231)
+..+||.++|++-|.++++.+..... ..++.+..++|+.+...... .+.. ..+|+|+|+ .+..+
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~------~~~i~~~~~~gg~~~~~q~~---~l~~-~~~IlVaTPgrL~d~l~~~~ 272 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGA------SSKIRNTVAYGGVPKRGQIY---ALRR-GVEILIACPGRLIDFLESNV 272 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhc------ccCccEEEEeCCCCHHHHHH---HHHc-CCCEEEECHHHHHHHHHcCC
Confidence 45689999999999999988877521 12567788888887554433 2333 478999996 33333
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 273 ~~l~~v~~lVi 283 (545)
T PTZ00110 273 TNLRRVTYLVL 283 (545)
T ss_pred CChhhCcEEEe
Confidence 56667777654
No 206
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=86.51 E-value=9.8 Score=34.73 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=51.7
Q ss_pred hcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCc
Q psy9509 110 KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189 (231)
Q Consensus 110 ~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 189 (231)
...+.+++|.++|+.-|.+.++.+...... .++.+..+.|+++..+|.... ..+|+++|. .+.|.|.
T Consensus 141 al~G~~v~VvTptreLA~qdae~~~~l~~~------lGlsv~~i~gg~~~~~r~~~y------~~dIvygT~-~e~~FDy 207 (656)
T PRK12898 141 ALAGLPVHVITVNDYLAERDAELMRPLYEA------LGLTVGCVVEDQSPDERRAAY------GADITYCTN-KELVFDY 207 (656)
T ss_pred hhcCCeEEEEcCcHHHHHHHHHHHHHHHhh------cCCEEEEEeCCCCHHHHHHHc------CCCEEEECC-Cchhhhh
Confidence 346789999999999999999988775321 268899999998876555432 468999875 4667776
Q ss_pred CCCc
Q psy9509 190 ENID 193 (231)
Q Consensus 190 ~~v~ 193 (231)
=.-+
T Consensus 208 Lrd~ 211 (656)
T PRK12898 208 LRDR 211 (656)
T ss_pred cccc
Confidence 4333
No 207
>KOG0348|consensus
Probab=86.06 E-value=2.2 Score=37.50 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=43.4
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+.-.+|.++|++-|.++|+.+++... .-...+-|.+---|+.+.+++--...++|||+|+
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~---------~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTP 270 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLK---------PFHWIVPGVLMGGEKKKSEKARLRKGINILIGTP 270 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhc---------CceEEeeceeecccccccHHHHHhcCceEEEcCc
Confidence 45689999999999999999998732 2333444444444556666666667789999996
No 208
>KOG0343|consensus
Probab=86.01 E-value=1.8 Score=38.15 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=40.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
++--+||..+|++-|.+.++.|.+.-. -..+.+..+-|+.. -..+.-+-...+|||||+
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk------~h~fSaGLiiGG~~-----~k~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGK------HHDFSAGLIIGGKD-----VKFELERISQMNILVCTP 198 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhh------ccccccceeecCch-----hHHHHHhhhcCCeEEech
Confidence 456799999999999999999987511 11233444555543 334445567889999996
No 209
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.14 E-value=7.2 Score=34.10 Aligned_cols=76 Identities=16% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------cccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~G 186 (231)
..++||.++|++-+.+.++.++.... ..+..+..++|+.+.... .+.+..+..+|+|+|.- -...
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~------~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~ 232 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTK------YTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGE 232 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhc------cCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCC
Confidence 35799999999999999988876521 115678888998765443 34555677899999963 1223
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+.+..+.+||.
T Consensus 233 ~~l~~l~~lVi 243 (475)
T PRK01297 233 VHLDMVEVMVL 243 (475)
T ss_pred cccccCceEEe
Confidence 45566666554
No 210
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=83.07 E-value=9.5 Score=35.27 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=49.6
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
+....+.++.|.++|..-|.+.++.+..... ..++.+..+.|+++..+|...+. .+|+++|..
T Consensus 92 l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~------~LGLsv~~i~g~~~~~~r~~~y~------~dIvyGT~~ 154 (745)
T TIGR00963 92 LNALTGKGVHVVTVNDYLAQRDAEWMGQVYR------FLGLSVGLILSGMSPEERREAYA------CDITYGTNN 154 (745)
T ss_pred HHHHhCCCEEEEcCCHHHHHHHHHHHHHHhc------cCCCeEEEEeCCCCHHHHHHhcC------CCEEEECCC
Confidence 4455677899999999999999998877632 12688999999999877665553 689999987
No 211
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=82.66 E-value=22 Score=32.59 Aligned_cols=114 Identities=12% Similarity=0.093 Sum_probs=73.7
Q ss_pred eeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE------------------
Q psy9509 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV------------------ 153 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~------------------ 153 (231)
+.-+....|...+..+++.. +.++||.+++...++.+++.|...++. ..+..+
T Consensus 37 l~Gl~gs~ka~lia~l~~~~-~r~vLIVt~~~~~A~~l~~dL~~~~~~--------~~v~~f~s~~~~~~~~~~~P~~d~ 107 (652)
T PRK05298 37 LLGVTGSGKTFTMANVIARL-QRPTLVLAHNKTLAAQLYSEFKEFFPE--------NAVEYFVSYYDYYQPEAYVPSSDT 107 (652)
T ss_pred EEcCCCcHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHhcCC--------CeEEEeCChhhccCccccCCCCcc
Confidence 34455667777777766553 468999999999999999999887542 122222
Q ss_pred ---cC----CCCHHHHHHHHHHHHcCCccEEEEcCccccccCcC----CCcEEEEecCCCCHHHHHHHhccc
Q psy9509 154 ---YS----DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE----NIDVVINYEAPDNIKKYIHRIGRT 214 (231)
Q Consensus 154 ---h~----~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~----~v~~vi~~~~p~~~~~~~qr~GR~ 214 (231)
.. .-....|..++..+..+.-.|+|+|-.+-.++=-| .....+..+-..+...+..+.-..
T Consensus 108 ~~~~~~~~~~~~~~~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L~~~ 179 (652)
T PRK05298 108 YIEKDSSINEEIERLRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRLVDL 179 (652)
T ss_pred cccccCCCChHHHHHHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHHHHc
Confidence 11 11134578888888877655667664333555434 234566677777888777665444
No 212
>KOG0298|consensus
Probab=82.15 E-value=3 Score=40.29 Aligned_cols=58 Identities=22% Similarity=0.265 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCccEE-EEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCce
Q psy9509 163 NKIIQEFRRRKIDLV-VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222 (231)
Q Consensus 163 ~~~~~~f~~~~~~vl-v~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~ 222 (231)
..-+..|++ +++| +-+...+.|+|+-...||+..++=-++..-.|.+||..|.|++..
T Consensus 1258 ~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1258 DDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred hhhhhhccc--ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccc
Confidence 334445544 6654 678899999999999999999988888999999999999997643
No 213
>KOG0329|consensus
Probab=81.43 E-value=3.7 Score=32.70 Aligned_cols=73 Identities=12% Similarity=0.297 Sum_probs=50.3
Q ss_pred cEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------cccccC
Q psy9509 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LARGID 188 (231)
Q Consensus 115 ~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~Gid 188 (231)
.++|.|+|++-|.++.+....... ......+.+++|+++-..-++.++. ...|+|+|+- -++.++
T Consensus 112 svlvmchtrelafqi~~ey~rfsk-----ymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~ 182 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSK-----YMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLN 182 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHh-----hCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCc
Confidence 679999999998888776654311 0117889999999986655555443 6678999962 345577
Q ss_pred cCCCcEEE
Q psy9509 189 VENIDVVI 196 (231)
Q Consensus 189 i~~v~~vi 196 (231)
+..+.+-+
T Consensus 183 lk~vkhFv 190 (387)
T KOG0329|consen 183 LKNVKHFV 190 (387)
T ss_pred hhhcceee
Confidence 77776533
No 214
>KOG0338|consensus
Probab=81.02 E-value=14 Score=32.56 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=53.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-------cc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-------LA 184 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-------~~ 184 (231)
.-.++||.|+|++-+.+++...++.- ....+.+...-|+++-..++.+++ ...+|+|||+= -.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qla------qFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLA------QFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHH------hhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccC
Confidence 34589999999999888877766641 012567777889999777666654 45679999973 34
Q ss_pred cccCcCCCcEEEEecC
Q psy9509 185 RGIDVENIDVVINYEA 200 (231)
Q Consensus 185 ~Gidi~~v~~vi~~~~ 200 (231)
.+.|+.++.+.|.-..
T Consensus 321 ~sf~ldsiEVLvlDEA 336 (691)
T KOG0338|consen 321 PSFNLDSIEVLVLDEA 336 (691)
T ss_pred CCccccceeEEEechH
Confidence 4556666666554333
No 215
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=80.86 E-value=15 Score=25.01 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=44.7
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-cccccC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-LARGID 188 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gid 188 (231)
...+++|++++...++...+.+...... ...+..+++........ ........++++|.. +.+...
T Consensus 29 ~~~~~lv~~p~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t~~~~~~~~~ 95 (144)
T cd00046 29 KGGQVLVLAPTRELANQVAERLKELFGE-------GIKVGYLIGGTSIKQQE----KLLSGKTDIVVGTPGRLLDELE 95 (144)
T ss_pred cCCCEEEEcCcHHHHHHHHHHHHHHhhC-------CcEEEEEecCcchhHHH----HHhcCCCCEEEECcHHHHHHHH
Confidence 5579999999999999998888765210 35577777765544433 333456788999865 444443
No 216
>KOG0335|consensus
Probab=80.65 E-value=6.8 Score=34.08 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=51.2
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccccc-c
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLARG-I 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-i 187 (231)
.+++|..+|++-+.++++.-++... .....+...+|+.+ ...-..+-.+.++|+|||. .+++| |
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~------~s~~~~~~~ygg~~----~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSY------LSGMKSVVVYGGTD----LGAQLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcc------cccceeeeeeCCcc----hhhhhhhhccCccEEEecCchhhhhhhccee
Confidence 5799999999999999998877621 12567778888844 2333445567788999984 46666 6
Q ss_pred CcCCCcEEE
Q psy9509 188 DVENIDVVI 196 (231)
Q Consensus 188 di~~v~~vi 196 (231)
.++++.+++
T Consensus 223 ~l~~~k~~v 231 (482)
T KOG0335|consen 223 SLDNCKFLV 231 (482)
T ss_pred ehhhCcEEE
Confidence 666666544
No 217
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=80.63 E-value=23 Score=28.18 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=51.1
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEc-CCCCHHHHHHHHHHHHcCCccEE
Q psy9509 101 PLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY-SDLKFDQRNKIIQEFRRRKIDLV 177 (231)
Q Consensus 101 ~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h-~~~~~~~r~~~~~~f~~~~~~vl 177 (231)
.+....+++.. .+.++-.+-.+.+.+++.+..|++..+ +..+...| |-.+..+.+.++++.+..+.++|
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p--------~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil 165 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYP--------GLKIVGSHDGYFDPEEEEAIVERIAASGPDIL 165 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCC--------CceEEEecCCCCChhhHHHHHHHHHhcCCCEE
Confidence 45555566544 235666666677888999999998865 56666665 76677777899999999888877
Q ss_pred EE
Q psy9509 178 VA 179 (231)
Q Consensus 178 v~ 179 (231)
+.
T Consensus 166 ~V 167 (253)
T COG1922 166 LV 167 (253)
T ss_pred EE
Confidence 43
No 218
>KOG1133|consensus
Probab=80.62 E-value=47 Score=30.58 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=63.3
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc----CCccEEEEc--Cccccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR----RKIDLVVAS--DNLARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~----~~~~vlv~T--~~~~~G 186 (231)
++-+++|++|-+=...+.+.+.+.--. . .-.+-+-..+-+..+ -+.+++.++. |.--+|+|. --++.|
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil-~--ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEG 702 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGIL-A--RIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEG 702 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchH-H--HhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccc
Confidence 467999999988777777777643000 0 000111111111111 3566666653 444466553 578899
Q ss_pred cCcCC--CcEEEEecCCCC--------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 187 IDVEN--IDVVINYEAPDN--------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 187 idi~~--v~~vi~~~~p~~--------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
||+.+ .++|+..+.|.. ...--|.+|||=|.-+.--++++++
T Consensus 703 INF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 703 INFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLD 778 (821)
T ss_pred cccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEeh
Confidence 99964 577998888842 1233488899988754444444443
No 219
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=80.50 E-value=10 Score=35.33 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=44.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.++|+.++|++-+....+.++... ..++.+..++|+.+..+|..+ + ...+|+|+|+
T Consensus 80 ~~~~aL~l~PtraLa~q~~~~l~~l~-------~~~i~v~~~~Gdt~~~~r~~i----~-~~~~IivtTP 137 (742)
T TIGR03817 80 PRATALYLAPTKALAADQLRAVRELT-------LRGVRPATYDGDTPTEERRWA----R-EHARYVLTNP 137 (742)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHhc-------cCCeEEEEEeCCCCHHHHHHH----h-cCCCEEEECh
Confidence 44689999999999999999998762 125678889999987766332 2 2468999996
No 220
>KOG0383|consensus
Probab=80.43 E-value=1.1 Score=40.81 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc-C-
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR-R- 172 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~-~- 172 (231)
...|...|...+++. .+.|++||..-....+.+-..+... + ....+.|..+..+|...+..|+. |
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~----------~-~~~r~dG~~~~~~rq~ai~~~n~~~~ 681 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYE----------G-KYERIDGPITGPERQAAIDRFNAPGS 681 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhcc----------C-cceeccCCccchhhhhhccccCCCCc
Confidence 345666777777665 6889999999888888877777654 4 77788999999999999999984 3
Q ss_pred -CccEEEEcCccccc
Q psy9509 173 -KIDLVVASDNLARG 186 (231)
Q Consensus 173 -~~~vlv~T~~~~~G 186 (231)
..-.|.+|.+++.|
T Consensus 682 ~~~cfllstra~g~g 696 (696)
T KOG0383|consen 682 NQFCFLLSTRAGGLG 696 (696)
T ss_pred cceEEEeecccccCC
Confidence 34478999998876
No 221
>KOG1132|consensus
Probab=79.82 E-value=56 Score=30.92 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=46.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--------CCccEEEEcCccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--------RKIDLVVASDNLA 184 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--------~~~~vlv~T~~~~ 184 (231)
+...|||+++-...+++...++... ....-.+..-..+ .-.+..+-.+++..|.+ |.+-.-||--..+
T Consensus 561 p~G~L~FfPSY~vmdk~~tfw~~~~---~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVS 636 (945)
T KOG1132|consen 561 PYGLLIFFPSYPVMDKLITFWQNRG---LWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVS 636 (945)
T ss_pred ccceEEeccchHHHHHHHHHHHcch---HHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEeccccc
Confidence 4459999999887777755444320 0000001111111 11122223344444432 3333458888999
Q ss_pred cccCcCCC--cEEEEecCCC
Q psy9509 185 RGIDVENI--DVVINYEAPD 202 (231)
Q Consensus 185 ~Gidi~~v--~~vi~~~~p~ 202 (231)
+|+|+.+- +.||..+.|.
T Consensus 637 EGlDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 637 EGLDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCCCccccCCceeEEecCCC
Confidence 99999644 5689888873
No 222
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=79.40 E-value=3.6 Score=26.67 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=29.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||.+-..+...+..|+.. ++.+..+.|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~----------G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQN----------GFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHC----------CCCEEEecCCHH
Confidence 3468999999877888888888876 667888888874
No 223
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=78.34 E-value=12 Score=37.48 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=53.7
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccc------cccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc----
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNV------ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN---- 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~---- 182 (231)
+.++|+.+++++-+..+.+.|+..+.. .......++.+...||+.+..+|.+.+ ....+|||+|.-
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll----~~ppdILVTTPEsL~~ 112 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLT----RNPPDILITTPESLYL 112 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHh----cCCCCEEEecHHHHHH
Confidence 457999999999999999888642110 000011267899999999988876543 345689999963
Q ss_pred -cc-cc-cCcCCCcEEEE
Q psy9509 183 -LA-RG-IDVENIDVVIN 197 (231)
Q Consensus 183 -~~-~G-idi~~v~~vi~ 197 (231)
+. .+ ..+.++.+||.
T Consensus 113 LLtsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 113 MLTSRARETLRGVETVII 130 (1490)
T ss_pred HHhhhhhhhhccCCEEEE
Confidence 11 22 24667777764
No 224
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=78.27 E-value=17 Score=34.35 Aligned_cols=62 Identities=18% Similarity=0.257 Sum_probs=48.3
Q ss_pred HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 109 RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 109 ~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
....+..++|.++|..-|.+.++.+..... ..+..+..++|+++..+|...+ ..+|+++|+-
T Consensus 119 ~al~G~~V~VvTpn~yLA~qd~e~m~~l~~------~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~g 180 (896)
T PRK13104 119 NAISGRGVHIVTVNDYLAKRDSQWMKPIYE------FLGLTVGVIYPDMSHKEKQEAY------KADIVYGTNN 180 (896)
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHhc------ccCceEEEEeCCCCHHHHHHHh------CCCEEEECCh
Confidence 344667899999999999999998887632 1267889999999988876554 4689999864
No 225
>KOG0342|consensus
Probab=77.05 E-value=15 Score=32.09 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=40.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+-.++|.|+|++-|-+.+..+++...-.. ++.+..+-|+.... .-.++... .+++||||+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~-----~~~v~~viGG~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHE-----SITVGIVIGGNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCC-----CcceEEEeCCccch---HHHHHhhc-cccEEEeCC
Confidence 345789999999999999888877632111 45566666665432 22334444 788999996
No 226
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=76.97 E-value=2.6 Score=39.92 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=41.9
Q ss_pred CccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCC
Q psy9509 173 KIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218 (231)
Q Consensus 173 ~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g 218 (231)
.++.+++-+++..|-|.|++=.++.+....|...-.|.+||..|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceecc
Confidence 6779999999999999999999999998888888899999999964
No 227
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=76.53 E-value=8.2 Score=34.67 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
.+-+||..+-..-.+.=...|+.. |+.+..++|.++.+++..++..+..|.+++|.-++.
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~----------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPE 116 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAA----------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPE 116 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHc----------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECch
Confidence 457888888887777767777766 899999999999999999999999999999855543
No 228
>PRK13766 Hef nuclease; Provisional
Probab=76.32 E-value=18 Score=33.79 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=52.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------ccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LAR 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~ 185 (231)
.++++||.++++..+++.++.+++..+. ....+..++|+.+..+|..... ..+|+|+|.- ...
T Consensus 57 ~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~------~~~~v~~~~g~~~~~~r~~~~~-----~~~iiv~T~~~l~~~l~~~ 125 (773)
T PRK13766 57 KGGKVLILAPTKPLVEQHAEFFRKFLNI------PEEKIVVFTGEVSPEKRAELWE-----KAKVIVATPQVIENDLIAG 125 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhCC------CCceEEEEeCCCCHHHHHHHHh-----CCCEEEECHHHHHHHHHcC
Confidence 4679999999999998888888775321 0246788999998877654432 3468999862 223
Q ss_pred ccCcCCCcEEEEe
Q psy9509 186 GIDVENIDVVINY 198 (231)
Q Consensus 186 Gidi~~v~~vi~~ 198 (231)
-+++..++++|.-
T Consensus 126 ~~~~~~~~liVvD 138 (773)
T PRK13766 126 RISLEDVSLLIFD 138 (773)
T ss_pred CCChhhCcEEEEE
Confidence 3455667776643
No 229
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=76.13 E-value=12 Score=31.27 Aligned_cols=114 Identities=21% Similarity=0.138 Sum_probs=75.5
Q ss_pred ecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 94 TCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
.+....|.+++++-+... .+.++.|-.+..+.|-+++..|++.+. +..+..+||+-++. |+
T Consensus 123 AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~--------~~~I~~Lyg~S~~~--------fr- 185 (441)
T COG4098 123 AVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFS--------NCDIDLLYGDSDSY--------FR- 185 (441)
T ss_pred EecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhc--------cCCeeeEecCCchh--------cc-
Confidence 456778999998888655 788999999999999999999998865 78899999987633 22
Q ss_pred CCccEEEEcCc-cccccCcCCCcEEEE---ecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 172 RKIDLVVASDN-LARGIDVENIDVVIN---YEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 172 ~~~~vlv~T~~-~~~Gidi~~v~~vi~---~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
..++|||.= +-+=- ...+++|. -.+|.+-+..+|-+-+-+|.......++-.+
T Consensus 186 --~plvVaTtHQLlrFk--~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTAT 242 (441)
T COG4098 186 --APLVVATTHQLLRFK--QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTAT 242 (441)
T ss_pred --ccEEEEehHHHHHHH--hhccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecC
Confidence 457777642 11110 11222332 1346666777776666666544444444433
No 230
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=75.77 E-value=6.9 Score=25.19 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=30.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... ++. +..+.|++.
T Consensus 55 ~~~~iv~~c~~g~~a~~~~~~l~~~----------G~~~v~~l~GG~~ 92 (100)
T smart00450 55 KDKPVVVYCRSGNRSAKAAWLLREL----------GFKNVYLLDGGYK 92 (100)
T ss_pred CCCeEEEEeCCCcHHHHHHHHHHHc----------CCCceEEecCCHH
Confidence 5678999999988899999999876 555 778888764
No 231
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=75.32 E-value=4.5 Score=26.76 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=30.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+++++|.+-..+...+..|+.. |+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~----------G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAER----------GYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----------CceeEEeCCcHH
Confidence 4568999999988888999999887 777777888764
No 232
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=74.31 E-value=25 Score=30.96 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=58.3
Q ss_pred HHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----
Q psy9509 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD----- 181 (231)
Q Consensus 107 ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~----- 181 (231)
.+....+ ++|+-.+|+--+.+-++.+.+..+.. ...+..+.|..++++|.. .|..+ +|+|||+
T Consensus 53 ~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip------~~~i~~ltGev~p~~R~~---~w~~~--kVfvaTPQvveN 120 (542)
T COG1111 53 RLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIP------EDEIAALTGEVRPEEREE---LWAKK--KVFVATPQVVEN 120 (542)
T ss_pred HHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCC------hhheeeecCCCChHHHHH---HHhhC--CEEEeccHHHHh
Confidence 3444454 89999999999999888888763211 356889999999998874 45444 4889984
Q ss_pred -ccccccCcCCCcEEEEec
Q psy9509 182 -NLARGIDVENIDVVINYE 199 (231)
Q Consensus 182 -~~~~Gidi~~v~~vi~~~ 199 (231)
..+--+|+.++.++|.-.
T Consensus 121 Dl~~Grid~~dv~~lifDE 139 (542)
T COG1111 121 DLKAGRIDLDDVSLLIFDE 139 (542)
T ss_pred HHhcCccChHHceEEEech
Confidence 233448998998877533
No 233
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=73.03 E-value=20 Score=31.78 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccc-cc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLA-RG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~G 186 (231)
+.++||.++|++-|.++++.++.... ..+..+..+.|+.+..+.. ..++ ...+|+|+|+ .+. .+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~------~~~~~~~~~~gG~~~~~q~---~~l~-~~~~IiV~TPgrL~~~l~~~~ 265 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGK------GLPFKTALVVGGDAMPQQL---YRIQ-QGVELIVGTPGRLIDLLSKHD 265 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhC------CCCceEEEEECCcchHHHH---HHhc-CCCCEEEECHHHHHHHHHcCC
Confidence 45799999999999988877765411 1135566677766544332 2233 3478999994 232 35
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 266 ~~l~~v~~lVi 276 (518)
T PLN00206 266 IELDNVSVLVL 276 (518)
T ss_pred ccchheeEEEe
Confidence 66777776654
No 234
>KOG0340|consensus
Probab=72.39 E-value=15 Score=30.82 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=42.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.-++||++|++-+.++++.+... +..-+.++..+.|+++.-..... -..+-+++|+|+
T Consensus 74 ~giFalvlTPTrELA~QiaEQF~al------Gk~l~lK~~vivGG~d~i~qa~~----L~~rPHvVvatP 133 (442)
T KOG0340|consen 74 YGIFALVLTPTRELALQIAEQFIAL------GKLLNLKVSVIVGGTDMIMQAAI----LSDRPHVVVATP 133 (442)
T ss_pred CcceEEEecchHHHHHHHHHHHHHh------cccccceEEEEEccHHHhhhhhh----cccCCCeEecCc
Confidence 4557899999999999999998764 11226789999999863322221 234566888875
No 235
>KOG0389|consensus
Probab=72.24 E-value=33 Score=32.03 Aligned_cols=72 Identities=14% Similarity=0.258 Sum_probs=46.1
Q ss_pred HHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC--CccEEEE
Q psy9509 103 VLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR--KIDLVVA 179 (231)
Q Consensus 103 ~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~--~~~vlv~ 179 (231)
+.+.+|++. .+++=||.|++--- -.+|++. .+-+ ....+..||| ++.+|.++-..+..+ ..+||++
T Consensus 437 aFlayLkq~g~~gpHLVVvPsSTl----eNWlrEf-~kwC----Psl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllT 505 (941)
T KOG0389|consen 437 AFLAYLKQIGNPGPHLVVVPSSTL----ENWLREF-AKWC----PSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLT 505 (941)
T ss_pred HHHHHHHHcCCCCCcEEEecchhH----HHHHHHH-HHhC----CceEEEeccC--cHHHHHHHHHHHhccCCCccEEEE
Confidence 344444443 56788888887432 2333332 0001 1578999999 558999999999886 6789999
Q ss_pred cCcccc
Q psy9509 180 SDNLAR 185 (231)
Q Consensus 180 T~~~~~ 185 (231)
|--++.
T Consensus 506 TY~la~ 511 (941)
T KOG0389|consen 506 TYNLAA 511 (941)
T ss_pred Eeeccc
Confidence 855444
No 236
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=71.02 E-value=24 Score=33.06 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=47.2
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC-HHHHHHHHHHHHcCCccEEEEcC
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK-FDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~-~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+....+.++.|.++|..-|.+-++.+...+.. .++.+..+.|+++ ..+|.... ..+|+++|.
T Consensus 114 l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~------lGl~v~~i~g~~~~~~~r~~~y------~~dIvygT~ 176 (790)
T PRK09200 114 LNALEGKGVHLITVNDYLAKRDAEEMGQVYEF------LGLTVGLNFSDIDDASEKKAIY------EADIIYTTN 176 (790)
T ss_pred HHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhh------cCCeEEEEeCCCCcHHHHHHhc------CCCEEEECC
Confidence 34557889999999999999988888765321 2788999999998 77766432 378999984
No 237
>KOG0346|consensus
Probab=70.02 E-value=11 Score=32.46 Aligned_cols=68 Identities=16% Similarity=0.142 Sum_probs=47.4
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----ccccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARGI 187 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~Gi 187 (231)
+...+|.++|++-|.+++..+.+... .+ .-.+++.-+.++++..+ .+.+-.+...|+|+|+. ++.|+
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~-~c---~k~lr~~nl~s~~sdsv----~~~~L~d~pdIvV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVE-YC---SKDLRAINLASSMSDSV----NSVALMDLPDIVVATPAKLLRHLAAGV 164 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHH-HH---HHhhhhhhhhcccchHH----HHHHHccCCCeEEeChHHHHHHHhhcc
Confidence 45789999999999999999977511 00 11345556666777444 44566778889999986 56666
Q ss_pred C
Q psy9509 188 D 188 (231)
Q Consensus 188 d 188 (231)
.
T Consensus 165 ~ 165 (569)
T KOG0346|consen 165 L 165 (569)
T ss_pred c
Confidence 3
No 238
>KOG0350|consensus
Probab=69.87 E-value=16 Score=32.15 Aligned_cols=78 Identities=13% Similarity=0.292 Sum_probs=52.3
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH-HHHHHHHHHHcCCccEEEEcCc-------ccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD-QRNKIIQEFRRRKIDLVVASDN-------LAR 185 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~-~r~~~~~~f~~~~~~vlv~T~~-------~~~ 185 (231)
-+++|.++++.-+-+++..+...-. +.+..+..+.|.-+-+ |..+....-....++|||+|+- .-.
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~------~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k 289 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNS------GTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK 289 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhcc------CCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC
Confidence 4799999999999999999987621 2255566666644332 2333333334456799999975 356
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
|+|+....+.|.
T Consensus 290 ~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 290 SFDLKHLRFLVI 301 (620)
T ss_pred CcchhhceEEEe
Confidence 777777777554
No 239
>KOG0334|consensus
Probab=69.54 E-value=20 Score=34.09 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=45.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
++.=+||.++|++.+.++.+.+...... .++++..++|+... .+.+...+.| ..|+|||.
T Consensus 437 dGPi~li~aPtrela~QI~r~~~kf~k~------l~ir~v~vygg~~~---~~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 437 DGPIALILAPTRELAMQIHREVRKFLKL------LGIRVVCVYGGSGI---SQQIAELKRG-AEIVVCTP 496 (997)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHHhh------cCceEEEecCCccH---HHHHHHHhcC-CceEEecc
Confidence 3455799999999999999998876322 37888889988764 4456777778 78899884
No 240
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=69.51 E-value=4.7 Score=37.52 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=42.7
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCC
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g 218 (231)
...+.|++-.++..|-|-|+|=.++-+....|..+=+|.+||..|..
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 45779999999999999999988999998999999999999999963
No 241
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=69.05 E-value=11 Score=24.99 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=41.2
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH------------HHHHHHHHHHcCCccEEEEcCcc
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD------------QRNKIIQEFRRRKIDLVVASDNL 183 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~------------~r~~~~~~f~~~~~~vlv~T~~~ 183 (231)
.||.+.....+..+++.|... ...+....|.+... ...+.+.+...+.-.|++|||.-
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~----------~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D 70 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGE----------EYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPD 70 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTT----------TEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SS
T ss_pred CEEEEeCHHHHHHHHHHcCCC----------CEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCC
Confidence 367888888888888888632 45666666654222 22455555555667799999987
Q ss_pred ccccCc
Q psy9509 184 ARGIDV 189 (231)
Q Consensus 184 ~~Gidi 189 (231)
..|-.+
T Consensus 71 ~EGe~I 76 (100)
T PF01751_consen 71 REGELI 76 (100)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 766543
No 242
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=68.00 E-value=12 Score=24.39 Aligned_cols=37 Identities=11% Similarity=-0.085 Sum_probs=28.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
...+++++|++-..+...+..|... |+ .+..+.|++.
T Consensus 55 ~~~~ivv~c~~g~~s~~~~~~l~~~----------G~~~v~~l~GG~~ 92 (96)
T cd01529 55 RATRYVLTCDGSLLARFAAQELLAL----------GGKPVALLDGGTS 92 (96)
T ss_pred CCCCEEEEeCChHHHHHHHHHHHHc----------CCCCEEEeCCCHH
Confidence 4568999999988888888888665 55 4777777763
No 243
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=67.03 E-value=18 Score=26.04 Aligned_cols=40 Identities=23% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhh
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
..+.+...+..++.+. .+.+++|.|.+.+.++.+-+.|=.
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~ 51 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWT 51 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcC
Confidence 4556788888888765 688999999999998888887733
No 244
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=66.77 E-value=36 Score=32.59 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCh-HHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLK-PLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k-~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
+.| +.+++.++... .+.+++|.++|++-|.+.++.+..... ..+..+..+.|+++..++...+ ..+
T Consensus 118 eGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k------~lGLsV~~i~GG~~~~eq~~~y------~~D 185 (970)
T PRK12899 118 EGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLR------WLGLTTGVLVSGSPLEKRKEIY------QCD 185 (970)
T ss_pred CChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHh------hcCCeEEEEeCCCCHHHHHHHc------CCC
Confidence 344 33444444333 445689999999999999999877621 1257788999999988775443 378
Q ss_pred EEEEcCc
Q psy9509 176 LVVASDN 182 (231)
Q Consensus 176 vlv~T~~ 182 (231)
|+++|+-
T Consensus 186 IVygTPg 192 (970)
T PRK12899 186 VVYGTAS 192 (970)
T ss_pred EEEECCC
Confidence 9999864
No 245
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=66.12 E-value=15 Score=24.22 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=28.3
Q ss_pred cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 111 HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 111 ~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
....+++|||.+-..+...+..|... |+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKER----------GFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHh----------CCcceeeechhHH
Confidence 35568999999877778888888776 664 667777754
No 246
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=65.82 E-value=40 Score=31.81 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=49.0
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
+....+..+-|.++|..-|.+-++.+...+. ..++.+..+.|+++..+|...+. .+|+++|..
T Consensus 117 l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~------~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT~~ 179 (830)
T PRK12904 117 LNALTGKGVHVVTVNDYLAKRDAEWMGPLYE------FLGLSVGVILSGMSPEERREAYA------ADITYGTNN 179 (830)
T ss_pred HHHHcCCCEEEEecCHHHHHHHHHHHHHHHh------hcCCeEEEEcCCCCHHHHHHhcC------CCeEEECCc
Confidence 4555677899999999988888888877632 12788999999999998887753 678888864
No 247
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=64.81 E-value=7.6 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.228 Sum_probs=30.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc--cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM--NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~h~~~~ 158 (231)
...++++||++-..+...+..|+.. |+ .+..+.|++.
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~----------G~~~~v~~l~GG~~ 109 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKEL----------GLERFVRDIIGGLK 109 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHc----------CCccceeeecchHH
Confidence 4568999999988888899999887 66 5788888874
No 248
>PRK13767 ATP-dependent helicase; Provisional
Probab=64.57 E-value=37 Score=32.40 Aligned_cols=64 Identities=9% Similarity=0.053 Sum_probs=43.5
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccc---cc---cCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNV---AT---KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~---~~---~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.++|+.+++++-+...++.|.+.... .. .....++.+...||+.+..++.+.+. ...+|+|+|+
T Consensus 85 ~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~~p~IlVtTP 154 (876)
T PRK13767 85 VYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----KPPHILITTP 154 (876)
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----CCCCEEEecH
Confidence 46999999999999888766532110 00 00111567889999999888765443 3567999996
No 249
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=64.42 E-value=23 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.100 Sum_probs=34.5
Q ss_pred eecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhh
Q psy9509 93 TTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 93 ~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
.....+.+..++..|+.+. .+.+++|.|.+.+.++.+=+.|=.
T Consensus 7 YhL~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWt 51 (154)
T PRK06646 7 YQTSDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWT 51 (154)
T ss_pred EEeCCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcC
Confidence 3446778888999998775 788999999999988888777733
No 250
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=64.19 E-value=11 Score=24.54 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=27.9
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
+.++++||.+-..+...+..|+.. ++.+..+.|++.
T Consensus 56 ~~~iv~~c~~G~rs~~aa~~L~~~----------G~~v~~l~GG~~ 91 (95)
T cd01534 56 GARIVLADDDGVRADMTASWLAQM----------GWEVYVLEGGLA 91 (95)
T ss_pred CCeEEEECCCCChHHHHHHHHHHc----------CCEEEEecCcHH
Confidence 467999999977778888888766 666777788763
No 251
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=63.11 E-value=14 Score=24.95 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.2
Q ss_pred CCCcEEEEEcch--HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTA--QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||++- ..+..++..|... |+.+..+.|++.
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~----------G~~v~~l~GG~~ 101 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAEL----------GFPVKEMIGGLD 101 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHc----------CCeEEEecCCHH
Confidence 456899999875 3677888888776 667778888764
No 252
>KOG0345|consensus
Probab=62.48 E-value=52 Score=28.87 Aligned_cols=75 Identities=13% Similarity=0.240 Sum_probs=51.8
Q ss_pred cEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----cccc---c
Q psy9509 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLAR---G 186 (231)
Q Consensus 115 ~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~---G 186 (231)
-.+|..+|++-|-++.+.+...... ..+..+..+-|+.+.+ +=++.|+....+|||+|+ ++.+ +
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~-----l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~ 152 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEH-----LPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEK 152 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHh-----hhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhh
Confidence 4699999999998888887665321 1256788888886543 346778888899999996 3443 4
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+|+-...++|.
T Consensus 153 l~~rsLe~LVL 163 (567)
T KOG0345|consen 153 LSFRSLEILVL 163 (567)
T ss_pred ccccccceEEe
Confidence 55445555543
No 253
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=61.88 E-value=79 Score=25.07 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEE-EEcCCCCHHHHHHHHHHHHcCCccEE
Q psy9509 101 PLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA-EVYSDLKFDQRNKIIQEFRRRKIDLV 177 (231)
Q Consensus 101 ~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~h~~~~~~~r~~~~~~f~~~~~~vl 177 (231)
.+.+..+++.. .+.++.++-.+.+.++.+++.|++.+ +..+. ..||-.++++...++++.+....++|
T Consensus 91 ~dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y---------~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil 161 (243)
T PRK03692 91 ADLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQW---------NVNIVGSQDGYFTPEQRQALFERIHASGAKIV 161 (243)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHh---------CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 34455555443 34566666666777889999887752 34444 45676767777889999998888876
Q ss_pred EE
Q psy9509 178 VA 179 (231)
Q Consensus 178 v~ 179 (231)
+.
T Consensus 162 ~V 163 (243)
T PRK03692 162 TV 163 (243)
T ss_pred EE
Confidence 43
No 254
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=61.41 E-value=23 Score=25.28 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=25.7
Q ss_pred HHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhh
Q psy9509 101 PLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 101 ~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
...+..++.+. .+.+++|+|...+.++.+-+.|=.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~ 51 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWT 51 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHC
Confidence 46777777665 788999999999999998888744
No 255
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=61.21 E-value=23 Score=24.02 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=31.8
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCC
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDL 157 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~ 157 (231)
..+...+... ...++++||++-..+..++..|+.. |+. +..+.|++
T Consensus 64 ~~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~----------G~~~v~~l~GG~ 113 (118)
T cd01449 64 EELRALFAALGITPDKPVIVYCGSGVTACVLLLALELL----------GYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc----------CCCCeeeeCChH
Confidence 3444445443 4568999999977888888888776 653 66666765
No 256
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=61.08 E-value=59 Score=31.03 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=51.1
Q ss_pred HHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 104 l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
+..++....+..+.|.+++.--|.+=++.+...+. ..|+.+..+.+++++.+|...+. .+|+.+|..
T Consensus 114 l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~------~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT~~ 180 (913)
T PRK13103 114 LAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYE------FLGLSVGIVTPFQPPEEKRAAYA------ADITYGTNN 180 (913)
T ss_pred HHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhc------ccCCEEEEECCCCCHHHHHHHhc------CCEEEEccc
Confidence 34445566888999999998777777777766532 12788999999999999998777 778888865
No 257
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=60.37 E-value=17 Score=23.81 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=28.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
...+++++|++-..+...+..|.+. ++ .+..+.|++.
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~----------g~~~v~~l~gG~~ 90 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAI----------SAGEAYVLEGGLD 90 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHc----------CCccEEEeeCCHH
Confidence 4568999999988788888888775 44 4667888763
No 258
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.82 E-value=5.4 Score=29.34 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=29.2
Q ss_pred ccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEee
Q psy9509 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTS 52 (231)
Q Consensus 14 ~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~ 52 (231)
.++...+...+++++|||+++........++.+...+..
T Consensus 152 ~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 152 KLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred HHHHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 344445678999999999998888888887776555443
No 259
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=59.58 E-value=46 Score=31.65 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
...+.|++.+++.-+..=.+.|.+.... .+.++.+..++|+..+.+|. ++..+..+||+++.
T Consensus 114 ~~a~AL~lYPtnALa~DQ~~rl~~~~~~----~~~~v~~~~y~Gdt~~~~r~----~~~~~pp~IllTNp 175 (851)
T COG1205 114 PSARALLLYPTNALANDQAERLRELISD----LPGKVTFGRYTGDTPPEERR----AIIRNPPDILLTNP 175 (851)
T ss_pred cCccEEEEechhhhHhhHHHHHHHHHHh----CCCcceeeeecCCCChHHHH----HHHhCCCCEEEeCH
Confidence 3447899999987766666666554111 11158899999999998887 66678889999974
No 260
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=58.83 E-value=18 Score=23.85 Aligned_cols=37 Identities=8% Similarity=0.203 Sum_probs=28.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
...++++||++-..+...+..|.+. ++ .+..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~----------G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQ----------GFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHc----------CCccEEEecCCHH
Confidence 3568999999988888888888776 55 4777888765
No 261
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=58.20 E-value=24 Score=23.60 Aligned_cols=37 Identities=8% Similarity=-0.003 Sum_probs=28.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc--EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN--IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~h~~~~ 158 (231)
...+++|||.+-..+...+..|+.. |+. +..+.|++.
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~----------G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINA----------GLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHC----------CCCcceeEecCCHH
Confidence 3468999999977777788888776 663 677888874
No 262
>PTZ00424 helicase 45; Provisional
Probab=57.91 E-value=63 Score=27.28 Aligned_cols=76 Identities=13% Similarity=0.228 Sum_probs=47.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc------cc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL------AR 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~ 185 (231)
.+.++||.+++++-+.++++.+..... ..+..+....|+....+. .+.+.. ..+|+|+|.-. ..
T Consensus 95 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~---~~~~~~-~~~Ivv~Tp~~l~~~l~~~ 164 (401)
T PTZ00424 95 NACQALILAPTRELAQQIQKVVLALGD------YLKVRCHACVGGTVVRDD---INKLKA-GVHMVVGTPGRVYDMIDKR 164 (401)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHhh------hcCceEEEEECCcCHHHH---HHHHcC-CCCEEEECcHHHHHHHHhC
Confidence 456899999999999998888766521 113455666776654322 233333 35799999631 12
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+.+..+.++|.
T Consensus 165 ~~~l~~i~lvVi 176 (401)
T PTZ00424 165 HLRVDDLKLFIL 176 (401)
T ss_pred CcccccccEEEE
Confidence 345566776654
No 263
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=57.76 E-value=24 Score=23.33 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=27.8
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
..+++++|.+-..+..++..|... |+. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~----------G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKC----------GVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHc----------CCCCEEEEeCcHH
Confidence 567999998877888888888776 554 667888764
No 264
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=57.48 E-value=26 Score=21.94 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+++++|.+...+..++..|+.. +...+..+-|++.
T Consensus 49 ~~~~vv~~c~~~~~a~~~~~~l~~~---------G~~~v~~l~gG~~ 86 (89)
T cd00158 49 KDKPIVVYCRSGNRSARAAKLLRKA---------GGTNVYNLEGGML 86 (89)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHh---------CcccEEEecCChh
Confidence 5678999999988899999999876 1234666666653
No 265
>PRK05320 rhodanese superfamily protein; Provisional
Probab=57.05 E-value=25 Score=28.11 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCCH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLKF 159 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~~ 159 (231)
..+++++||.+-..++..+..|++. |+. +..+.|++..
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~----------Gf~~V~~L~GGi~~ 212 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEV----------GIDNVYQLEGGILK 212 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc----------CCcceEEeccCHHH
Confidence 5678999999999999999999887 664 7788898854
No 266
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=56.88 E-value=13 Score=24.37 Aligned_cols=37 Identities=5% Similarity=0.168 Sum_probs=27.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...+++|||.+-..+...+..|... |+. +..+.|++.
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~----------G~~~v~~l~Gg~~ 97 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDM----------GLKPVYNIEGGFK 97 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHc----------ChHHhEeecCcHH
Confidence 4568999998877778888888776 554 667777663
No 267
>PRK02362 ski2-like helicase; Provisional
Probab=56.79 E-value=36 Score=31.76 Aligned_cols=86 Identities=15% Similarity=0.139 Sum_probs=54.0
Q ss_pred CChHH-HHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPL-VLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~-~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..|.. +...+++.. .+.++++.+|+++-+.+.++.++.... .+..+..++|+...... ..+..+
T Consensus 50 SGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~-------~g~~v~~~tGd~~~~~~-------~l~~~~ 115 (737)
T PRK02362 50 SGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEE-------LGVRVGISTGDYDSRDE-------WLGDND 115 (737)
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhc-------CCCEEEEEeCCcCcccc-------ccCCCC
Confidence 44533 333444433 567899999999999999999885411 15678888998764321 124568
Q ss_pred EEEEcCc-----cccc-cCcCCCcEEEE
Q psy9509 176 LVVASDN-----LARG-IDVENIDVVIN 197 (231)
Q Consensus 176 vlv~T~~-----~~~G-idi~~v~~vi~ 197 (231)
|+|||.- +..+ ..+..+.++|.
T Consensus 116 IiV~Tpek~~~llr~~~~~l~~v~lvVi 143 (737)
T PRK02362 116 IIVATSEKVDSLLRNGAPWLDDITCVVV 143 (737)
T ss_pred EEEECHHHHHHHHhcChhhhhhcCEEEE
Confidence 9999952 2222 23456676654
No 268
>KOG0352|consensus
Probab=56.77 E-value=33 Score=29.72 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=48.8
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC--CccEEEEcCc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR--KIDLVVASDN 182 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~--~~~vlv~T~~ 182 (231)
++=+|||.+-..-+..-...|... .+++..+.+.|+..||.+++.++..- .+++|--|+.
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~L----------KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE 122 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRL----------KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPE 122 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhc----------CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchh
Confidence 347899999988887777777776 88999999999999999999999864 4557755543
No 269
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=56.55 E-value=22 Score=23.01 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCcEEEEEcc--hHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 113 MQGVLCFVNT--AQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 113 ~~~~iIF~~s--~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
..++++||.+ +..+...+..|... ++ .+..+.|++.
T Consensus 50 ~~~ivl~c~~G~~~~s~~aa~~L~~~----------G~~~v~~l~GG~~ 88 (92)
T cd01532 50 DTPIVVYGEGGGEDLAPRAARRLSEL----------GYTDVALLEGGLQ 88 (92)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHc----------CccCEEEccCCHH
Confidence 5689999998 44467778888766 44 4667777763
No 270
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=56.51 E-value=19 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.244 Sum_probs=28.5
Q ss_pred CCCcEEEEEc-chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVN-TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~-s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+++|||. +-..+..++..|+.. |+.+..+.|++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~----------G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESL----------GIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHc----------CCceeEeCCcHH
Confidence 4568999996 456677888888776 777888899875
No 271
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=56.45 E-value=74 Score=23.03 Aligned_cols=59 Identities=20% Similarity=0.202 Sum_probs=38.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
..++++.+++...+...+..+....... .......+++... ....+++..+...++++|
T Consensus 54 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~t 112 (201)
T smart00487 54 GKRVLVLVPTRELAEQWAEELKKLGPSL-----GLKVVGLYGGDSK----REQLRKLESGKTDILVTT 112 (201)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhccC-----CeEEEEEeCCcch----HHHHHHHhcCCCCEEEeC
Confidence 4689999999999888888887652210 0133445555433 344555666666899988
No 272
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=55.99 E-value=19 Score=23.21 Aligned_cols=36 Identities=11% Similarity=0.249 Sum_probs=28.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDL 157 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~ 157 (231)
...+++|+|++-..+...+..|... ++ .+..+.|++
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~----------G~~~v~~l~gG~ 91 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREA----------GFTDVRSLAGGF 91 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHc----------CCceEEEcCCCH
Confidence 5568999999988999999999877 54 366777765
No 273
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=55.26 E-value=23 Score=24.23 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=27.7
Q ss_pred CCCcEEEEEcc-hHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNT-AQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s-~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||++ -..+..++..|+.. ++. +..+.|++.
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~----------G~~~v~~l~GG~~ 116 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYF----------GHENVRVLDGGLQ 116 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHc----------CCCCEEEecCCHH
Confidence 46789999988 47787888888776 544 777777764
No 274
>PRK00254 ski2-like helicase; Provisional
Probab=55.20 E-value=48 Score=30.79 Aligned_cols=72 Identities=15% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG 186 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G 186 (231)
.+.++|+.+++++-+.+.++.+..... .+..+..++|+.+...+ + .+..+|+|+|+- +..+
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~~-------~g~~v~~~~Gd~~~~~~------~-~~~~~IiV~Tpe~~~~ll~~~ 132 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWEK-------LGLRVAMTTGDYDSTDE------W-LGKYDIIIATAEKFDSLLRHG 132 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHhh-------cCCEEEEEeCCCCCchh------h-hccCCEEEEcHHHHHHHHhCC
Confidence 457899999999999999988875311 26788899998875321 1 245789999942 2211
Q ss_pred -cCcCCCcEEEE
Q psy9509 187 -IDVENIDVVIN 197 (231)
Q Consensus 187 -idi~~v~~vi~ 197 (231)
..+.++.+||.
T Consensus 133 ~~~l~~l~lvVi 144 (720)
T PRK00254 133 SSWIKDVKLVVA 144 (720)
T ss_pred chhhhcCCEEEE
Confidence 33456666654
No 275
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=54.69 E-value=16 Score=24.15 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=27.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+...+..|... |+. +..+.|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~----------G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSL----------GYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHc----------CCccceecCCcHH
Confidence 3568999999988888888888776 553 566666653
No 276
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=52.56 E-value=52 Score=20.14 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=34.8
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccc
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 186 (231)
.++.|.....+..+.+.... +..+....|.....+....++++... ..|++++|.-..|
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-----------~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G 60 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-----------GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREG 60 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-----------CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhH
Confidence 46777777777777665531 23445555544444455556665444 5688888754444
No 277
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=51.73 E-value=46 Score=22.40 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=26.5
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
..++++||.+-..+...+..|.+. ++......|++.
T Consensus 60 ~~~IVlyC~~G~rS~~aa~~L~~~----------G~~~v~~~GG~~ 95 (104)
T PRK10287 60 NDTVKLYCNAGRQSGQAKEILSEM----------GYTHAENAGGLK 95 (104)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHc----------CCCeEEecCCHH
Confidence 457999999988888888988776 655444456643
No 278
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=51.44 E-value=54 Score=23.55 Aligned_cols=45 Identities=16% Similarity=0.028 Sum_probs=32.6
Q ss_pred HHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 104 LYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 104 l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
|...+... ...+++|+|.+...+..++..|... ++ .+..+.|++.
T Consensus 39 l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L~~~----------G~~~v~~L~GG~~ 85 (145)
T cd01535 39 LAQALEKLPAAERYVLTCGSSLLARFAAADLAAL----------TVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHhcCCCCCEEEEeCCChHHHHHHHHHHHc----------CCcCeEEecCcHH
Confidence 33444443 3468999999988888888888766 44 6888999873
No 279
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=51.34 E-value=89 Score=22.41 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 100 KPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 100 k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
-...+.++++.+ .++++.|+-.+....+-++.+|.+. +..+...|+....- .+. -...+
T Consensus 11 t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~----------gatV~~~~~~t~~l-----~~~--v~~AD 73 (140)
T cd05212 11 VAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRD----------GATVYSCDWKTIQL-----QSK--VHDAD 73 (140)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC----------CCEEEEeCCCCcCH-----HHH--HhhCC
Confidence 345666667654 6889999999999999999999876 78888888765321 111 23456
Q ss_pred EEEE-cCccccccC---cCCCcEEEEecCCC
Q psy9509 176 LVVA-SDNLARGID---VENIDVVINYEAPD 202 (231)
Q Consensus 176 vlv~-T~~~~~Gid---i~~v~~vi~~~~p~ 202 (231)
|+|+ |... .-++ +..-.+|++++...
T Consensus 74 IVvsAtg~~-~~i~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 74 VVVVGSPKP-EKVPTEWIKPGATVINCSPTK 103 (140)
T ss_pred EEEEecCCC-CccCHHHcCCCCEEEEcCCCc
Confidence 6654 3332 3344 32335688888665
No 280
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=49.87 E-value=45 Score=31.61 Aligned_cols=63 Identities=10% Similarity=0.103 Sum_probs=40.9
Q ss_pred CcEEEEE-cchHHHHHHHHHHhhhcccc-----------------ccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 114 QGVLCFV-NTAQGAHRLARLLHHIDNVA-----------------TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 114 ~~~iIF~-~s~~~~~~l~~~l~~~~~~~-----------------~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
.+.+||+ ++++-+.++++.+....... .......+.+..++|+.+..... +... ....
T Consensus 62 ~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~---~~l~-~~p~ 137 (844)
T TIGR02621 62 PRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEW---MLDP-HRPA 137 (844)
T ss_pred cceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHH---HhcC-CCCc
Confidence 4677766 99999999998887752211 01122357788999998754332 2222 3567
Q ss_pred EEEEc
Q psy9509 176 LVVAS 180 (231)
Q Consensus 176 vlv~T 180 (231)
|+|+|
T Consensus 138 IIVgT 142 (844)
T TIGR02621 138 VIVGT 142 (844)
T ss_pred EEEEC
Confidence 99999
No 281
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=47.62 E-value=70 Score=23.12 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=30.4
Q ss_pred CChHH-HHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 98 NLKPL-VLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 98 ~~k~~-~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
+.++. ++..++.+. .+.|++|-|.+...++.+-+.|=..
T Consensus 11 ~~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~ 52 (144)
T COG2927 11 ESTLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTF 52 (144)
T ss_pred chhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhcc
Confidence 34444 777777665 7899999999999999999888443
No 282
>KOG0337|consensus
Probab=47.43 E-value=74 Score=27.58 Aligned_cols=73 Identities=16% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--CCccEEEEcCc------cc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--RKIDLVVASDN------LA 184 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--~~~~vlv~T~~------~~ 184 (231)
+-+.+|-++|++-+.+..+.++.. +.+.+.+...+.|+.+ +.++|.. +.-++++||+= .+
T Consensus 90 g~RalilsptreLa~qtlkvvkdl------grgt~lr~s~~~ggD~------~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKVVKDL------GRGTKLRQSLLVGGDS------IEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred ccceeeccCcHHHHHHHHHHHHHh------ccccchhhhhhcccch------HHHHHHHhccCCCEEEecCceeeeeehh
Confidence 568999999999999988888775 2223556665656543 4455643 46779999863 45
Q ss_pred cccCcCCCcEEEE
Q psy9509 185 RGIDVENIDVVIN 197 (231)
Q Consensus 185 ~Gidi~~v~~vi~ 197 (231)
+-+++..|.+|+.
T Consensus 158 m~l~l~sveyVVf 170 (529)
T KOG0337|consen 158 MTLTLSSVEYVVF 170 (529)
T ss_pred eeccccceeeeee
Confidence 5566778888874
No 283
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=47.17 E-value=1e+02 Score=23.57 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=41.4
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH--------HHHHHHHHHHcCCc-cEEEEcCccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD--------QRNKIIQEFRRRKI-DLVVASDNLA 184 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~--------~r~~~~~~f~~~~~-~vlv~T~~~~ 184 (231)
+++|..|.+.+++..+.+ .... .-...++||.+++- .-...+++...+.+ .|++||+.--
T Consensus 79 ~~~icVVe~p~Dv~a~E~-~~~f----------~G~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTv 147 (198)
T COG0353 79 KSQLCVVEEPKDVLALEK-TGEF----------RGLYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTV 147 (198)
T ss_pred CceEEEEcchHHHHHHHH-hccc----------CeeEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCc
Confidence 567888888888776543 3333 34566777755443 24566777888888 8999998744
Q ss_pred cc
Q psy9509 185 RG 186 (231)
Q Consensus 185 ~G 186 (231)
.|
T Consensus 148 EG 149 (198)
T COG0353 148 EG 149 (198)
T ss_pred cc
Confidence 33
No 284
>KOG0341|consensus
Probab=47.01 E-value=37 Score=29.03 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=41.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.-.+|.|+|++-|.+.+..+.+....-.+..-...+...--|+++-.+...++++ .+.|+|||+
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~----GvHivVATP 310 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRR----GVHIVVATP 310 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhc----CeeEEEcCc
Confidence 455689999999999888888776522111110113445555678887666555432 466888875
No 285
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=46.06 E-value=70 Score=21.36 Aligned_cols=25 Identities=12% Similarity=0.154 Sum_probs=20.7
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
...+++++|.+-..+...+..|.+.
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~ 81 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDM 81 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHc
Confidence 3457889999988888889998876
No 286
>KOG0351|consensus
Probab=45.14 E-value=57 Score=31.38 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=45.0
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC--CccEEEEcC
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR--KIDLVVASD 181 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~--~~~vlv~T~ 181 (231)
++|..+-..-.+.....|... ++....++++++..+|..+++.++.| .+++|--|+
T Consensus 307 tvVISPL~SLm~DQv~~L~~~----------~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 307 TVVISPLISLMQDQVTHLSKK----------GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred eEEeccHHHHHHHHHHhhhhc----------CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 456666666666666666444 88999999999999999999999999 888886664
No 287
>COG1204 Superfamily II helicase [General function prediction only]
Probab=45.02 E-value=89 Score=29.40 Aligned_cols=70 Identities=14% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCh-HHHHHHHHHhcC--CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLK-PLVLYQLIRKHA--MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k-~~~l~~ll~~~~--~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..| +-+++.+++... +.+++-.||++.-|++.++.++.... .|+++..++|+.+.... .-.+.
T Consensus 58 sGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~-------~GirV~~~TgD~~~~~~-------~l~~~ 123 (766)
T COG1204 58 SGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEE-------LGIRVGISTGDYDLDDE-------RLARY 123 (766)
T ss_pred CchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHh-------cCCEEEEecCCcccchh-------hhccC
Confidence 344 344555555442 46899999999999999999982211 28999999998873321 12567
Q ss_pred cEEEEcC
Q psy9509 175 DLVVASD 181 (231)
Q Consensus 175 ~vlv~T~ 181 (231)
+|+|+|.
T Consensus 124 ~ViVtT~ 130 (766)
T COG1204 124 DVIVTTP 130 (766)
T ss_pred CEEEEch
Confidence 7999985
No 288
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=43.08 E-value=36 Score=23.23 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=27.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||++-..+...+..|... ++. +..+.|++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~----------G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQA----------GFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHC----------CCCeEEECcCcee
Confidence 4567999999988888889999876 554 555666654
No 289
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=42.28 E-value=1.7e+02 Score=23.01 Aligned_cols=74 Identities=18% Similarity=0.242 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc---CCccEEEEcCccccccCcCCCcEEEEec
Q psy9509 123 AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR---RKIDLVVASDNLARGIDVENIDVVINYE 199 (231)
Q Consensus 123 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~---~~~~vlv~T~~~~~Gidi~~v~~vi~~~ 199 (231)
..+++.+++.|++. ++.+ ..+.+++..+-.+.+++|.+ ....++++. .++.|.. +.++-.|
T Consensus 31 ~~D~~~l~~~f~~l----------gF~V-~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG~~----~~l~~~D 94 (243)
T cd00032 31 DVDAENLTKLFESL----------GYEV-EVKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHGEE----GGIYGTD 94 (243)
T ss_pred HHHHHHHHHHHHHC----------CCEE-EEeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCCCC----CEEEEec
Confidence 46688999999887 7766 45677888888888888874 233344333 5667754 5565555
Q ss_pred -CCCCHHHHHHHhc
Q psy9509 200 -APDNIKKYIHRIG 212 (231)
Q Consensus 200 -~p~~~~~~~qr~G 212 (231)
.+-+....++...
T Consensus 95 ~~~v~l~~i~~~f~ 108 (243)
T cd00032 95 GDVVPIDEITSLFN 108 (243)
T ss_pred CcEEEHHHHHHhhc
Confidence 4555666666554
No 290
>PRK01415 hypothetical protein; Validated
Probab=42.06 E-value=50 Score=26.26 Aligned_cols=39 Identities=8% Similarity=0.059 Sum_probs=32.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCCHH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLKFD 160 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~~~ 160 (231)
..+++++||.+--.|+..+..|.+. |+. +..+.|++..-
T Consensus 170 k~k~Iv~yCtgGiRs~kAa~~L~~~----------Gf~~Vy~L~GGi~~w 209 (247)
T PRK01415 170 KGKKIAMVCTGGIRCEKSTSLLKSI----------GYDEVYHLKGGILQY 209 (247)
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc----------CCCcEEEechHHHHH
Confidence 5678999999999999999999887 665 77888887543
No 291
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=42.01 E-value=47 Score=23.08 Aligned_cols=40 Identities=18% Similarity=0.347 Sum_probs=31.5
Q ss_pred HHHHHHHHHcCCccEEEEcCccccccCcC------CCcEEEEecCC
Q psy9509 162 RNKIIQEFRRRKIDLVVASDNLARGIDVE------NIDVVINYEAP 201 (231)
Q Consensus 162 r~~~~~~f~~~~~~vlv~T~~~~~Gidi~------~v~~vi~~~~p 201 (231)
-.+++.+..+|++.+.|.|.--.-+||++ .-++||+||-.
T Consensus 63 t~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD~R 108 (144)
T PF10657_consen 63 TPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFDKR 108 (144)
T ss_pred cHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEeccCC
Confidence 36788999999999999998878888875 23578888753
No 292
>PRK01172 ski2-like helicase; Provisional
Probab=41.90 E-value=1.4e+02 Score=27.55 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=39.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.++++.+|+++-+.+.++.+++... .+..+....|+.+...+ + .+..+|+|+|.
T Consensus 64 ~~~k~v~i~P~raLa~q~~~~~~~l~~-------~g~~v~~~~G~~~~~~~------~-~~~~dIiv~Tp 119 (674)
T PRK01172 64 AGLKSIYIVPLRSLAMEKYEELSRLRS-------LGMRVKISIGDYDDPPD------F-IKRYDVVILTS 119 (674)
T ss_pred hCCcEEEEechHHHHHHHHHHHHHHhh-------cCCeEEEEeCCCCCChh------h-hccCCEEEECH
Confidence 356899999999999999988875311 25667777887654321 1 13468999996
No 293
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=41.50 E-value=1.7e+02 Score=23.61 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=47.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH-HHHHHHHHcC--CccEEEEcCccccccC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR-NKIIQEFRRR--KIDLVVASDNLARGID 188 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r-~~~~~~f~~~--~~~vlv~T~~~~~Gid 188 (231)
.+..+|+...+.+..+++++.|... .+..+..+.-+++..+. .++.+..+.. .+++||- .++.|..
T Consensus 29 ~g~~liLvaR~~~kL~~la~~l~~~---------~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVN--NAG~g~~ 97 (265)
T COG0300 29 RGYNLILVARREDKLEALAKELEDK---------TGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVN--NAGFGTF 97 (265)
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHh---------hCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEE--CCCcCCc
Confidence 5667999999999999999999876 25677888888877654 4445555554 6788874 4445544
No 294
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=41.41 E-value=1.4e+02 Score=28.12 Aligned_cols=63 Identities=14% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCC-----CCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD-----LKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~-----~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
+....+..++|.+++..-|.+.++.+...... .+..+...+++ +.+.+|... ...+|+++|+.
T Consensus 106 l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~------LGLsv~~~~~~s~~~~~~~~~rr~~------y~~dIvygTp~ 173 (762)
T TIGR03714 106 LNALTGKGAMLVTTNDYLAKRDAEEMGPVYEW------LGLTVSLGVVDDPDEEYDANEKRKI------YNSDIVYTTNS 173 (762)
T ss_pred HHhhcCCceEEeCCCHHHHHHHHHHHHHHHhh------cCCcEEEEECCCCccccCHHHHHHh------CCCCEEEECch
Confidence 34446678999999999998888888554211 15566655553 444444322 23678888754
No 295
>PLN02160 thiosulfate sulfurtransferase
Probab=41.10 E-value=40 Score=23.88 Aligned_cols=37 Identities=5% Similarity=-0.013 Sum_probs=29.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+...+..|... |+. +..+.|++.
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~----------G~~~v~~l~GG~~ 117 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAA----------GYKKVRNKGGGYL 117 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHc----------CCCCeeecCCcHH
Confidence 4568999999999999999999876 654 666777764
No 296
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=40.58 E-value=43 Score=32.35 Aligned_cols=55 Identities=25% Similarity=0.497 Sum_probs=43.4
Q ss_pred HHHHHHHH--HcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 162 RNKIIQEF--RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 162 r~~~~~~f--~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
+.....+| .....++||.++++--|.|-|..+ ++-+|-|--.-..+|.+.|+.|.
T Consensus 580 ~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~-TmYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 580 KKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN-TLYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HhhhhhhhcCcCCCCCEEEEEccccccCCccccc-eEEeccccccchHHHHHHHhccC
Confidence 34444453 346788999999999999999876 45677787778899999999996
No 297
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=38.96 E-value=1.1e+02 Score=20.31 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=27.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...+++++|.+-..+...+..|+.. ++. +..+.|++.
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~----------G~~~v~~l~GG~~ 94 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQ----------GFDVVYSIDGGFE 94 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHC----------CchheEEecCCHH
Confidence 3567888998888888888888776 554 667788764
No 298
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=38.86 E-value=95 Score=25.19 Aligned_cols=65 Identities=14% Similarity=-0.034 Sum_probs=41.9
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
-+|+|.....+..+-..+.-. .....+|-.-.......+++....|+. |.+.+|++--+|.-|+.
T Consensus 27 d~i~~EDTR~t~kLL~~~~I~-----------~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~ 91 (276)
T TIGR00096 27 DLFAEEDTRTSKLLLHLGIIA-----------TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGH 91 (276)
T ss_pred CEEEecCchhHHHHHHhcCCC-----------CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccH
Confidence 577888877777766655321 234455555455555666676777755 77778888888877754
No 299
>PRK08187 pyruvate kinase; Validated
Probab=38.38 E-value=1.3e+02 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGID 188 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 188 (231)
..|.+++..-+.....+++||++++-=+.
T Consensus 405 ~~Qk~II~~craagkpvI~ATQmLESM~~ 433 (493)
T PRK08187 405 EMQEEILWLCEAAHVPVIWATQVLEGLVK 433 (493)
T ss_pred HHHHHHHHHHHHhCCCeEEEchhhHhhcc
Confidence 44888888888888889999999765544
No 300
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=37.63 E-value=1.1e+02 Score=21.77 Aligned_cols=46 Identities=7% Similarity=-0.027 Sum_probs=28.5
Q ss_pred HHHHHHHhc---CCCcEEEEEcc---hHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 103 VLYQLIRKH---AMQGVLCFVNT---AQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 103 ~l~~ll~~~---~~~~~iIF~~s---~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
.+.+++... ...++||||.+ -..+-.++-.|+.. |. .+..+.|+++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~----------G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLC----------GHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHc----------CCCCeEEeCCCHH
Confidence 455555544 45689999975 34455666666554 43 4777887754
No 301
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=37.29 E-value=85 Score=26.66 Aligned_cols=110 Identities=14% Similarity=0.196 Sum_probs=62.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEEc---------chHHHHHHHHHHhhhccccccCCCCcccEE--EEcCCCCHHH-HHHHHH
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVN---------TAQGAHRLARLLHHIDNVATKGAGTKMNIA--EVYSDLKFDQ-RNKIIQ 167 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~---------s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~h~~~~~~~-r~~~~~ 167 (231)
.+..|.+.+.... -+.+|.|| |+++.+.+.+...++ ++.+. .+|.++.-.. +.....
T Consensus 146 D~~~LE~~~~~~~-vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh----------~v~VISDEIHaDlv~~g~~h~~~a 214 (388)
T COG1168 146 DFDALEKAFVDER-VKLFILCNPHNPTGRVWTKEELRKIAELCLRH----------GVRVISDEIHADLVLGGHKHIPFA 214 (388)
T ss_pred cHHHHHHHHhcCC-ccEEEEeCCCCCCCccccHHHHHHHHHHHHHc----------CCEEEeecccccccccCCCccchh
Confidence 3455555554433 36888887 466677777766665 44433 4566543222 221122
Q ss_pred HHHcCCccEEEEcCccccccCcCCCcE-EEEecCCCCHHHHHHHhcccccCCCC
Q psy9509 168 EFRRRKIDLVVASDNLARGIDVENIDV-VINYEAPDNIKKYIHRIGRTARGGRQ 220 (231)
Q Consensus 168 ~f~~~~~~vlv~T~~~~~Gidi~~v~~-vi~~~~p~~~~~~~qr~GR~gR~g~~ 220 (231)
....+..+..++..+.+.+.|+++..+ .+...-+.....|..|.-|.++.|-+
T Consensus 215 ~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n 268 (388)
T COG1168 215 SLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPS 268 (388)
T ss_pred hcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCc
Confidence 222222344455566778888887765 33344456668888888887776644
No 302
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=36.31 E-value=1.5e+02 Score=22.60 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=47.4
Q ss_pred CChHHHHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc---EEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 98 NLKPLVLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN---IAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 98 ~~k~~~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
....+.|.+.+.. ..+.++++++.... ...+.+.|++. ++. +..|.. ..........+.+..+.
T Consensus 101 ~~~s~~L~~~l~~~~~~~~vl~~~g~~~-~~~l~~~L~~~----------g~~v~~~~vY~~-~~~~~~~~~~~~l~~~~ 168 (231)
T PF02602_consen 101 EGSSEGLAELLKEQLRGKRVLILRGEGG-RPDLPEKLREA----------GIEVTEVIVYET-PPEELSPELKEALDRGE 168 (231)
T ss_dssp SSSHHHHHGGHHHCCTTEEEEEEESSSS-CHHHHHHHHHT----------TEEEEEEECEEE-EEHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhhCCCCeEEEEcCCCc-cHHHHHHHHHC----------CCeEEEEEEeec-ccccchHHHHHHHHcCC
Confidence 5556777777764 45556666555433 55677888665 433 333444 56677888899999888
Q ss_pred ccEEEEcCc
Q psy9509 174 IDLVVASDN 182 (231)
Q Consensus 174 ~~vlv~T~~ 182 (231)
..+++-|+.
T Consensus 169 ~~~v~ftS~ 177 (231)
T PF02602_consen 169 IDAVVFTSP 177 (231)
T ss_dssp TSEEEESSH
T ss_pred CCEEEECCH
Confidence 887766653
No 303
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=36.23 E-value=2e+02 Score=22.40 Aligned_cols=74 Identities=8% Similarity=-0.042 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccE---EEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNI---AEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~---~~~h~~~~~~~r~~~~~~f~~ 171 (231)
.....+.|.+++... .++++++++... ..+.+.+.|++. |..+ ..|.............+.+..
T Consensus 100 ~~~~~e~L~~~~~~~~~~~~~vL~~rg~~-~r~~l~~~L~~~----------G~~v~~~~vY~~~~~~~~~~~~~~~l~~ 168 (240)
T PRK09189 100 GGGDGVRLAETVAAALAPTARLLYLAGRP-RAPVFEDRLAAA----------GIPFRVAECYDMLPVMYSPATLSAILGG 168 (240)
T ss_pred CCCCHHHHHHHHHHhcCCCCcEEEeccCc-ccchhHHHHHhC----------CCeeEEEEEEEeecCCCChHHHHHHHhc
Confidence 344556666666443 455666666554 447888888775 4332 223222222223455677777
Q ss_pred CCccEEEEcC
Q psy9509 172 RKIDLVVASD 181 (231)
Q Consensus 172 ~~~~vlv~T~ 181 (231)
+.+++++-|+
T Consensus 169 ~~~d~i~f~S 178 (240)
T PRK09189 169 APFDAVLLYS 178 (240)
T ss_pred CCCCEEEEeC
Confidence 7777554443
No 304
>PHA03371 circ protein; Provisional
Probab=36.18 E-value=37 Score=26.43 Aligned_cols=46 Identities=22% Similarity=0.248 Sum_probs=28.6
Q ss_pred cccccCcCCCcEE-EEecCC-------------CCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 183 LARGIDVENIDVV-INYEAP-------------DNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 183 ~~~Gidi~~v~~v-i~~~~p-------------~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
.+|-||+|+-+-+ |..+.+ .+.-.|+|.+|||--.|...+-++|..
T Consensus 30 aGR~vDLPgGde~~If~~~g~T~~~~g~f~~~g~~r~~~v~fIGRAya~g~~RkF~iyl~ 89 (240)
T PHA03371 30 AGRTVDLPGGDELRIFADCGTTTVNFGKFVRPGSSRLAYVKFIGRAYAIGSGRKFVIYLS 89 (240)
T ss_pred cCcceecCCCCeEEEeccCCCCccceeeEecCCCCcceeeeeeehhhccCCCceEEEEEc
Confidence 5566777766554 432332 356778899999977765555555443
No 305
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=35.92 E-value=78 Score=25.50 Aligned_cols=47 Identities=6% Similarity=-0.042 Sum_probs=32.7
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
.-|..++... ...++|+||++--.+-.++..|... |+. +..+.|++.
T Consensus 217 ~~l~~~~~~~g~~~~~~ii~yC~~G~~A~~~~~~l~~~----------G~~~v~~y~Gs~~ 267 (281)
T PRK11493 217 DELDAIFFGRGVSFDRPIIASCGSGVTAAVVVLALATL----------DVPNVKLYDGAWS 267 (281)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc----------CCCCceeeCCCHH
Confidence 3444444432 4568999999988888888888765 554 777888764
No 306
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=35.06 E-value=2.2e+02 Score=22.33 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=54.7
Q ss_pred CCcEEEEEcc-----------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC----CccEE
Q psy9509 113 MQGVLCFVNT-----------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR----KIDLV 177 (231)
Q Consensus 113 ~~~~iIF~~s-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~----~~~vl 177 (231)
.+.+||+.|. ..+++.+++.|++. ++.+. ++-+++..+-.+.+++|... ...++
T Consensus 8 ~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~l----------gF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~ 76 (241)
T smart00115 8 RGLALIINNENFHSLPRRNGTDVDAENLTELFQSL----------GYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSF 76 (241)
T ss_pred CcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHC----------CCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEE
Confidence 4567787776 35799999999887 77764 56778989988999999763 34555
Q ss_pred EEcCccccccCcCCCcEEEEecC-CCCHHHHHHHh
Q psy9509 178 VASDNLARGIDVENIDVVINYEA-PDNIKKYIHRI 211 (231)
Q Consensus 178 v~T~~~~~Gidi~~v~~vi~~~~-p~~~~~~~qr~ 211 (231)
++. .++.|. .+.++-.|. +-+........
T Consensus 77 v~~-~~sHG~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 77 VCV-LLSHGE----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred EEE-EcCCCC----CCeEEEecCCEEEHHHHHHhc
Confidence 444 567773 245554443 33444444444
No 307
>PF13245 AAA_19: Part of AAA domain
Probab=34.32 E-value=1.1e+02 Score=19.17 Aligned_cols=39 Identities=23% Similarity=0.116 Sum_probs=28.3
Q ss_pred cCCCChHHHHHHHHHhc------CCCcEEEEEcchHHHHHHHHHH
Q psy9509 95 CSTNLKPLVLYQLIRKH------AMQGVLCFVNTAQGAHRLARLL 133 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~------~~~~~iIF~~s~~~~~~l~~~l 133 (231)
.+...|-..+...+... .++++++.+.++..++.+.+.+
T Consensus 18 ~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 18 PPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 44566765555544333 2778999999999999998888
No 308
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=34.28 E-value=19 Score=34.74 Aligned_cols=17 Identities=41% Similarity=0.261 Sum_probs=14.3
Q ss_pred CCcEEEEeeecCCChhh
Q psy9509 22 RPQRLLFSATLSHDPEK 38 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~ 38 (231)
...+++||||||+....
T Consensus 624 G~~VlLmSATLP~~l~~ 640 (1110)
T TIGR02562 624 GSRVLLSSATLPPALVK 640 (1110)
T ss_pred CCCEEEEeCCCCHHHHH
Confidence 46899999999987655
No 309
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=33.89 E-value=1.8e+02 Score=24.87 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=45.0
Q ss_pred CCCcEEEE---EcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccc
Q psy9509 112 AMQGVLCF---VNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184 (231)
Q Consensus 112 ~~~~~iIF---~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 184 (231)
.++.+||+ +.|-......++.|++.- ...+.+...||-++ ...+++.+.|.+|.+.-+++|+...
T Consensus 263 ~gr~vIIVDDII~TG~Tl~~aa~~Lk~~G-------A~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~ 330 (382)
T PRK06827 263 EGKDVLIVDDMIASGGSMIDAAKELKSRG-------AKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVY 330 (382)
T ss_pred CCCEEEEEeCCcCcHHHHHHHHHHHHHcC-------CCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCc
Confidence 44566664 445555666667776651 12466788899888 6667777888888889899998864
No 310
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=33.82 E-value=1.1e+02 Score=20.99 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=23.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHh
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLH 134 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~ 134 (231)
.+..+.+.+...+ +|+++||.|-.++-.++.+-+
T Consensus 74 ~v~~f~~~l~~~~-~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 74 DVEAFADALESLP-KPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp HHHHHHHHHHTTT-TSEEEE-SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCEEEECCCChhHHHHHHHHh
Confidence 4555666666654 689999999888877766543
No 311
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=33.72 E-value=2.7e+02 Score=22.86 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=54.1
Q ss_pred CCCChHHHHHHHHHhc-------CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHH--
Q psy9509 96 STNLKPLVLYQLIRKH-------AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII-- 166 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~-------~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~-- 166 (231)
..+.|+..|..++... .+.+++|.++..++.+.+-..|... ++.+..+.|.....+....-
T Consensus 93 ~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk----------~~~~kr~sg~~l~~~~~~~~~~ 162 (297)
T PF11496_consen 93 YTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGK----------KLNYKRYSGESLYDEKHKVPKN 162 (297)
T ss_dssp HT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTS----------SSEEEESSS--S--S---S---
T ss_pred HcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccC----------CeeEEecCCCCCcCccccCCcc
Confidence 4567888888777554 3468999999999999998888764 55555666644333322221
Q ss_pred ----------HHH-Hc--CCccEEEEcCc-cccc----cCcCCCcEEEEecCCCC-HHHHHHHhcccccC
Q psy9509 167 ----------QEF-RR--RKIDLVVASDN-LARG----IDVENIDVVINYEAPDN-IKKYIHRIGRTARG 217 (231)
Q Consensus 167 ----------~~f-~~--~~~~vlv~T~~-~~~G----idi~~v~~vi~~~~p~~-~~~~~qr~GR~gR~ 217 (231)
... .. ....|-++|+. +... .+-..++.||-||.-.+ ....+|++-..+|.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~ 232 (297)
T PF11496_consen 163 GNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRR 232 (297)
T ss_dssp -------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-----
T ss_pred cccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCC
Confidence 011 11 23334455543 3331 22236678999987644 23456665344443
No 312
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=33.61 E-value=1.4e+02 Score=23.86 Aligned_cols=48 Identities=10% Similarity=0.069 Sum_probs=31.9
Q ss_pred cccceeeecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 87 ELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 87 ~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
+....+...++.+ +++.++-... .+..+.+|+++.++++++.+.|++.
T Consensus 163 ~vDav~LDmp~PW--~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 163 DVDAVFLDLPDPW--NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred ccCEEEEcCCChH--HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc
Confidence 3344444444443 4444443333 5678999999999999999999875
No 313
>PRK06739 pyruvate kinase; Validated
Probab=33.50 E-value=3e+02 Score=23.30 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 190 (231)
..++++++..+.-...|++||++++-=+.-|
T Consensus 251 ~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p 281 (352)
T PRK06739 251 LLQKMMIQECNRTNTYVITATQMLQSMVDHS 281 (352)
T ss_pred HHHHHHHHHHHHhCCCEEEEcchHHhhccCC
Confidence 4467788888888888999999987665543
No 314
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=33.21 E-value=1.2e+02 Score=24.31 Aligned_cols=90 Identities=16% Similarity=0.425 Sum_probs=51.5
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC-CHHHHHHHHHHHHcCCccEEEEcCc-----cccc-
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL-KFDQRNKIIQEFRRRKIDLVVASDN-----LARG- 186 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~-~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G- 186 (231)
..+||.|.+--.|-.+.+.|+..-. .+..++.+-+.. --++. ++-.+.+.+.|.|+|+. ++.|
T Consensus 127 P~~lvvs~SalRa~dl~R~l~~~~~-------k~~~v~KLFaKH~Kl~eq---v~~L~~~~~~i~vGTP~Rl~kLle~~~ 196 (252)
T PF14617_consen 127 PHVLVVSSSALRAADLIRALRSFKG-------KDCKVAKLFAKHIKLEEQ---VKLLKKTRVHIAVGTPGRLSKLLENGA 196 (252)
T ss_pred CEEEEEcchHHHHHHHHHHHHhhcc-------CCchHHHHHHhhccHHHH---HHHHHhCCceEEEeChHHHHHHHHcCC
Confidence 4688888888888888888876511 013344443322 22222 33345678889999975 3333
Q ss_pred cCcCCCcEEE-E-----------ecCCCCHHHHHHHhcc
Q psy9509 187 IDVENIDVVI-N-----------YEAPDNIKKYIHRIGR 213 (231)
Q Consensus 187 idi~~v~~vi-~-----------~~~p~~~~~~~qr~GR 213 (231)
+.+....+|| + +|.|.....+++..++
T Consensus 197 L~l~~l~~ivlD~s~~D~K~~~i~d~~e~~~~l~~lL~~ 235 (252)
T PF14617_consen 197 LSLSNLKRIVLDWSYLDQKKRSIFDIPETREDLWKLLYK 235 (252)
T ss_pred CCcccCeEEEEcCCccccccccccccHHHHHHHHHHHhh
Confidence 4555555544 3 4556655556555444
No 315
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.18 E-value=1.2e+02 Score=22.05 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=25.8
Q ss_pred HHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 103 VLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 103 ~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
.|.+++++. ...++||-.+|+-.++++++.|+..
T Consensus 21 vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 21 VLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp HHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred ccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 455666544 6679999999999999999999754
No 316
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.15 E-value=1.9e+02 Score=20.95 Aligned_cols=45 Identities=9% Similarity=0.225 Sum_probs=29.7
Q ss_pred cEEEEEcc-------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 115 GVLCFVNT-------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 115 ~~iIF~~s-------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
+++||+.| ...+..+...|+.. ++.+....=+++...+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~----------~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESF----------RVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHh
Confidence 35677765 77788888888776 66666666566666666654443
No 317
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=33.12 E-value=1e+02 Score=25.48 Aligned_cols=47 Identities=15% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
+-|..++... ...++|+||++-..+-.++..|+.. |+. +..+.|++.
T Consensus 255 ~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~----------G~~~v~~YdGs~~ 305 (320)
T PLN02723 255 EELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRL----------GKTDVPVYDGSWT 305 (320)
T ss_pred HHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHc----------CCCCeeEeCCCHH
Confidence 3344555433 4568999999977777777777765 554 778888764
No 318
>PHA02653 RNA helicase NPH-II; Provisional
Probab=33.07 E-value=1.6e+02 Score=27.38 Aligned_cols=76 Identities=12% Similarity=0.010 Sum_probs=45.4
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
..+++|-+++++.+.+++..+.+..+.. ...+..+...+|+.+...... +.....++++|.-+. -.++..+
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~---~~~g~~v~v~~Gg~~~~~~~t-----~~k~~~Ilv~T~~L~-l~~L~~v 292 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFD---EIDGSPISLKYGSIPDELINT-----NPKPYGLVFSTHKLT-LNKLFDY 292 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCcc---ccCCceEEEEECCcchHHhhc-----ccCCCCEEEEeCccc-ccccccC
Confidence 4589999999999988888876542110 112456778899887321111 111457999984321 0145567
Q ss_pred cEEEE
Q psy9509 193 DVVIN 197 (231)
Q Consensus 193 ~~vi~ 197 (231)
.+||.
T Consensus 293 ~~VVI 297 (675)
T PHA02653 293 GTVII 297 (675)
T ss_pred CEEEc
Confidence 76664
No 319
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=33.02 E-value=81 Score=23.12 Aligned_cols=37 Identities=3% Similarity=-0.129 Sum_probs=26.8
Q ss_pred CCCcEEEEEcchH-HHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQ-GAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~-~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++|+||.+-. .+...+..|... |+. +..+.|++.
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~----------G~~~V~~l~GG~~ 153 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAY----------GYSNVYWYPDGTD 153 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhc----------CCcceEEecCCHH
Confidence 5578999999753 566677777776 554 777888764
No 320
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=32.89 E-value=73 Score=26.31 Aligned_cols=39 Identities=5% Similarity=0.100 Sum_probs=31.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCCHH
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLKFD 160 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~~~ 160 (231)
..+++++||.+-..++..+..|... |+. +..+.|++..-
T Consensus 170 kdk~IvvyC~~G~Rs~~aa~~L~~~----------Gf~~V~~L~GGi~~w 209 (314)
T PRK00142 170 KDKKVVMYCTGGIRCEKASAWMKHE----------GFKEVYQLEGGIITY 209 (314)
T ss_pred CcCeEEEECCCCcHHHHHHHHHHHc----------CCCcEEEecchHHHH
Confidence 5678999999988889999999876 664 88888987543
No 321
>PHA02558 uvsW UvsW helicase; Provisional
Probab=32.23 E-value=2.1e+02 Score=25.37 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHH---hcCCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 97 TNLKPLVLYQLIR---KHAMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 97 ~~~k~~~l~~ll~---~~~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
...|......+.. .....++||.++|++-+++.++.+++.
T Consensus 139 GsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 139 SAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 4556654443322 223348999999999999999998875
No 322
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=31.10 E-value=3.4e+02 Score=23.32 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHhc---------CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRKH---------AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~---------~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~ 167 (231)
.+.|+..|..+|... ..+.+.|.+++..+++-..+.|.+... ...+... -...++.++.+
T Consensus 168 ~~~~v~tL~~~L~g~~~p~~Il~grD~~iyVLa~~qrd~~W~~Q~L~k~~~--------~~~v~v~---~~~~~~~~ie~ 236 (393)
T PRK15327 168 PQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQSLARGDY--------DKNARVI---NENEENKRVST 236 (393)
T ss_pred hHHHHHHHHHHhcCCCCceEEEeCCCCcEEEEEccccHhHHHHHHHhhCCC--------cCceEEe---chHHHHHHHHH
Confidence 344888899988654 235799999999999999888876511 1233333 15667777887
Q ss_pred HHHcC
Q psy9509 168 EFRRR 172 (231)
Q Consensus 168 ~f~~~ 172 (231)
....+
T Consensus 237 ~L~~~ 241 (393)
T PRK15327 237 WLDTY 241 (393)
T ss_pred HHHhc
Confidence 77775
No 323
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=30.45 E-value=84 Score=25.01 Aligned_cols=50 Identities=8% Similarity=0.120 Sum_probs=36.9
Q ss_pred ccccceeeecCCCCh-HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 86 AELSEKLTTCSTNLK-PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k-~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
......+...+..+. +..+...| +..++.+.+|+++.+++.++.+.|++.
T Consensus 112 ~~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~ 162 (247)
T PF08704_consen 112 SDFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREH 162 (247)
T ss_dssp TSEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred CcccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHC
Confidence 345556666776664 55555655 345678999999999999999999885
No 324
>KOG0385|consensus
Probab=30.32 E-value=4.2e+02 Score=25.22 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=40.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc-CCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR-RKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~-~~~~vlv~T~ 181 (231)
.++|-+|.|+--- ...-.+.+++.-| .+.+..+||+ .++|....+.+.. |..+|+|+|-
T Consensus 216 ~~GPfLVi~P~St-L~NW~~Ef~rf~P--------~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 216 IPGPFLVIAPKST-LDNWMNEFKRFTP--------SLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCeEEEeeHhh-HHHHHHHHHHhCC--------CcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 3578899888543 2333333333323 7889999995 5788888887765 6888988873
No 325
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=30.11 E-value=77 Score=20.78 Aligned_cols=37 Identities=8% Similarity=0.170 Sum_probs=24.2
Q ss_pred CCCcEEEEEcchHHHHHHHHH-----HhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARL-----LHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~-----l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
....+|+||.+.......+.. |... ++ .+..+.||+.
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~----------g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKL----------GFKNVYILDGGFE 108 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHT----------TTSSEEEETTHHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHc----------CCCCEEEecChHH
Confidence 445688889666666665555 5554 44 6888888764
No 326
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=29.47 E-value=2.3e+02 Score=20.79 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=20.4
Q ss_pred ccccCcCCCcEEEEec----CCCCHHHHHHHhcccccC
Q psy9509 184 ARGIDVENIDVVINYE----APDNIKKYIHRIGRTARG 217 (231)
Q Consensus 184 ~~Gidi~~v~~vi~~~----~p~~~~~~~qr~GR~gR~ 217 (231)
++.=++.-.++||--+ .|.+...|.|..|=.-+.
T Consensus 105 ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki 142 (163)
T cd05796 105 ARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKL 142 (163)
T ss_pred ccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEE
Confidence 3333444445555433 256778899998876665
No 327
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=29.29 E-value=1.3e+02 Score=18.04 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=31.8
Q ss_pred EEEEE-cchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC-CccEEE
Q psy9509 116 VLCFV-NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR-KIDLVV 178 (231)
Q Consensus 116 ~iIF~-~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~-~~~vlv 178 (231)
+.+|. +.+..|..+.+.|++. ++....+.-......+.+..+..... .++.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~----------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK----------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC----------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 45555 4467788888888876 66666666665555555544443332 455444
No 328
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=28.96 E-value=87 Score=25.25 Aligned_cols=78 Identities=15% Similarity=0.301 Sum_probs=49.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcC-
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE- 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~- 190 (231)
+.-++||+++...-+-...+.+++. .-.+..+-|.... -..+++. ..++.+.++...+|-.++
T Consensus 61 p~mKaIVv~q~vpGt~~af~kIkek----------RpDIl~ia~~~~E--Dp~~i~~----~aDi~~~~D~~~~G~~i~~ 124 (275)
T PF12683_consen 61 PDMKAIVVSQAVPGTAEAFRKIKEK----------RPDILLIAGEPHE--DPEVISS----AADIVVNPDEISRGYTIVW 124 (275)
T ss_dssp TTEEEEEEE-SS---HHHHHHHHHH-----------TTSEEEESS--S---HHHHHH----HSSEEEE--HHHHHHHHHH
T ss_pred CCccEEEEeCCCcchHHHHHHHHhc----------CCCeEEEcCCCcC--CHHHHhh----ccCeEeccchhhccHHHHH
Confidence 4568999999999888888888887 3356666665432 2233333 467999999999999887
Q ss_pred -----CCcEEEEecCCCCHH
Q psy9509 191 -----NIDVVINYEAPDNIK 205 (231)
Q Consensus 191 -----~v~~vi~~~~p~~~~ 205 (231)
++...+|+.+|...+
T Consensus 125 ~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 125 AAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp HHHHTT-S-EEEEEETTGGG
T ss_pred HHHHcCCceEEEEechhhcc
Confidence 567789999998765
No 329
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=28.72 E-value=62 Score=21.27 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=21.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
..++++|+|.+-......+..|.+.
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~ 84 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLA 84 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHc
Confidence 4568999999999999999999887
No 330
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.28 E-value=2.5e+02 Score=20.86 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=28.5
Q ss_pred CCCcEEEEEcc--------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 112 AMQGVLCFVNT--------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 112 ~~~~~iIF~~s--------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
...+++|+.|+ ..+++.+.+.| ++.+.. |+..-+....++++.|...
T Consensus 76 ~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l-------------gIpvl~-h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 76 GKDRVLIVSNSAGSSDDPDGERAEALEKAL-------------GIPVLR-HRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred CCCeEEEEECCCCcccCccHHHHHHHHHhh-------------CCcEEE-eCCCCCccHHHHHHHHhhc
Confidence 34489999998 34455554444 444433 4444446667888888653
No 331
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=28.23 E-value=3.3e+02 Score=22.25 Aligned_cols=63 Identities=6% Similarity=0.024 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
++.+.+.+++..-.-.+||++-...++.+.+.+..- -..+..+.-+.+..+-.++.+..+...
T Consensus 54 f~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~----------i~liv~ITEgIP~~D~~~~~~~a~~~g 116 (293)
T COG0074 54 FNTVEEAVKETGANASVIFVPPPFAADAILEAIDAG----------IKLVVIITEGIPVLDMLELKRYAREKG 116 (293)
T ss_pred HHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCC----------CcEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 455666666665667899999999999999988763 335777888888888888887777655
No 332
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.81 E-value=3.8e+02 Score=22.77 Aligned_cols=71 Identities=7% Similarity=0.003 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHhcCCCcEEEEEcc----hHHHHHHHHHHhhhccccccCCCCcccEEEEcCC---CCHHHHHHHHHHHHc
Q psy9509 99 LKPLVLYQLIRKHAMQGVLCFVNT----AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD---LKFDQRNKIIQEFRR 171 (231)
Q Consensus 99 ~k~~~l~~ll~~~~~~~~iIF~~s----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~---~~~~~r~~~~~~f~~ 171 (231)
..+..|-+.++....++++|.+.. ....+++.+.|++. ++.+..+.+- -+.+.-.+..+.++.
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~----------~i~~~~f~~v~~np~~~~v~~~~~~~~~ 86 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEER----------NIFSVIYDGTQPNPTTENVAAGLKLLKE 86 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHc----------CCeEEEeCCCCCCcCHHHHHHHHHHHHH
Confidence 455666666666654567766543 12345566666544 4555445442 234445666777777
Q ss_pred CCccEEEE
Q psy9509 172 RKIDLVVA 179 (231)
Q Consensus 172 ~~~~vlv~ 179 (231)
.+.+++|+
T Consensus 87 ~~~D~Iia 94 (383)
T PRK09860 87 NNCDSVIS 94 (383)
T ss_pred cCCCEEEE
Confidence 78887775
No 333
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=27.69 E-value=56 Score=21.37 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCccEEEEcC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~ 181 (231)
-+..+++.+++|+++++|.|.
T Consensus 48 g~~~i~~~i~~~~IdlVIn~~ 68 (95)
T PF02142_consen 48 GRVQIMDLIKNGKIDLVINTP 68 (95)
T ss_dssp HCHHHHHHHHTTSEEEEEEE-
T ss_pred chhHHHHHHHcCCeEEEEEeC
Confidence 344799999999987776653
No 334
>KOG0701|consensus
Probab=27.16 E-value=19 Score=36.29 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccc
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~g 215 (231)
..|.....+|..+.+..+++|+....|.|+--++.|+.++.-.+..++.|..||+.
T Consensus 708 ~~rn~~~~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~ 763 (1606)
T KOG0701|consen 708 MYRNDDQPQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVD 763 (1606)
T ss_pred hhhcccccceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccc
Confidence 35666666777788889999999999999999999999999999999999999984
No 335
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.10 E-value=2.2e+02 Score=19.68 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=41.4
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH------------cCCccEEEEc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR------------RRKIDLVVAS 180 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~------------~~~~~vlv~T 180 (231)
+.|.+|-++-++........+.+. ++++.+.++...+|. ++..-||++.
T Consensus 30 ~~P~iV~fdmk~tld~F~~q~~~~-------------------~lte~q~~~~~~rF~~~L~~~L~~yq~~H~~vILvsp 90 (112)
T TIGR02744 30 NSPVTVAFDMKQTLDAFFDSASQK-------------------KLSEAQQKALLGRFNALLEAELQAWQAQHHAIILVSP 90 (112)
T ss_pred CCCeEEEEecHHHHHHHHHHHhhc-------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCEEEEech
Confidence 457899889999888888877544 467777777777774 3444566666
Q ss_pred CccccccCcC
Q psy9509 181 DNLARGIDVE 190 (231)
Q Consensus 181 ~~~~~Gidi~ 190 (231)
.+.+=+.|+.
T Consensus 91 AVv~Ga~DIT 100 (112)
T TIGR02744 91 AVVSGAVDIT 100 (112)
T ss_pred hhhcCCCCCC
Confidence 6666667764
No 336
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=26.67 E-value=98 Score=21.28 Aligned_cols=47 Identities=17% Similarity=0.134 Sum_probs=27.6
Q ss_pred CCCcEEEEEc-chHHHHHHHHHHhhhc---cccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVN-TAQGAHRLARLLHHID---NVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~-s~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+++++|. +-..+...+..|+... .+..-...+...+..+.|++.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567889996 7777778888887631 000000001235778888764
No 337
>PRK09206 pyruvate kinase; Provisional
Probab=26.67 E-value=4.5e+02 Score=23.25 Aligned_cols=94 Identities=11% Similarity=0.180 Sum_probs=47.2
Q ss_pred ecCCCChHHHHHHHHHhcC--CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 94 TCSTNLKPLVLYQLIRKHA--MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~~--~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
++.....+..+.+++.... .-.++.=..+.+..+.+-+.+...+...-- .+...+..-+..++ ....++++..+.
T Consensus 193 FVr~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVa--RGDLgvelg~e~vp-~~qk~ii~~~~~ 269 (470)
T PRK09206 193 FIRKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVA--RGDLGVEIPVEEVI-FAQKMMIEKCNR 269 (470)
T ss_pred CCCCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEEC--cchhhhhcCHHHHH-HHHHHHHHHHHH
Confidence 3334444555555555432 223444455556666665555443110000 00111111122222 346677777787
Q ss_pred CCccEEEEcCccccccCcC
Q psy9509 172 RKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~ 190 (231)
-...+++||++++-=++-|
T Consensus 270 ~gkpvI~ATqmLeSM~~np 288 (470)
T PRK09206 270 ARKVVITATQMLDSMIKNP 288 (470)
T ss_pred cCCCEEEEchhHHHHhhCC
Confidence 7888999999987655543
No 338
>KOG0333|consensus
Probab=26.36 E-value=1.7e+02 Score=26.37 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=42.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc-CCccEEEEcCc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR-RKIDLVVASDN 182 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~-~~~~vlv~T~~ 182 (231)
.+...+|..+|++.++.+.+.-.+. ....++++..+-|+++.+++- |+- -.+.|+|||+-
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf------~~~lg~r~vsvigg~s~EEq~-----fqls~gceiviatPg 381 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKF------GKPLGIRTVSVIGGLSFEEQG-----FQLSMGCEIVIATPG 381 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHh------cccccceEEEEecccchhhhh-----hhhhccceeeecCch
Confidence 5678999999999988887765554 112268899999999877643 332 23568888863
No 339
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=25.98 E-value=1.9e+02 Score=18.59 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=19.7
Q ss_pred CCCcEEEEEc------chHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVN------TAQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~------s~~~~~~l~~~l~~~ 136 (231)
...+++||+. .+.-|..+.+.|...
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 4468999986 567788888888876
No 340
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=25.38 E-value=2e+02 Score=18.84 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=19.3
Q ss_pred CCCcEEEEEc------chHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVN------TAQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~------s~~~~~~l~~~l~~~ 136 (231)
...+++||.. .+.-|.++.+.|.+.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 4568999974 467788888888876
No 341
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=25.29 E-value=94 Score=19.17 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhh
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
...++|.|.+.+.++++.+.+++
T Consensus 47 dDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 47 DDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp SSEEEEEESTTSHHHHHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHh
Confidence 35789999999999999998875
No 342
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=25.22 E-value=1.7e+02 Score=17.73 Aligned_cols=55 Identities=7% Similarity=0.120 Sum_probs=32.4
Q ss_pred cEEEEEcc-hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 115 GVLCFVNT-AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 115 ~~iIF~~s-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
++.+|... ...|..+.+.|.+. ++....+.=...+..+.+..+.-..+.++.++.
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~----------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREK----------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 45555544 77788888888877 666666655544444444444333345555544
No 343
>PTZ00066 pyruvate kinase; Provisional
Probab=24.52 E-value=5.2e+02 Score=23.20 Aligned_cols=31 Identities=13% Similarity=0.080 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~ 190 (231)
..++++++..+.-...|++||++++-=++-|
T Consensus 295 ~~QK~II~~c~~~gkPVIvATQmLeSMi~np 325 (513)
T PTZ00066 295 LAQKMMISKCNVAGKPVITATQMLESMIKNP 325 (513)
T ss_pred hHHHHHHHHHHHhCCCEEEechhHHHHhhCC
Confidence 3467777777777778999999977655543
No 344
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=24.18 E-value=61 Score=17.35 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=12.7
Q ss_pred CCHHHHHHHhccc--ccCC
Q psy9509 202 DNIKKYIHRIGRT--ARGG 218 (231)
Q Consensus 202 ~~~~~~~qr~GR~--gR~g 218 (231)
+|.+.|.+|+||. ||.|
T Consensus 2 sseekflrrl~r~~~gryg 20 (42)
T PF03875_consen 2 SSEEKFLRRLGRFFYGRYG 20 (42)
T ss_pred chHHHHHHHHHhhcccccC
Confidence 4567899999996 4555
No 345
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=23.41 E-value=2.7e+02 Score=22.41 Aligned_cols=34 Identities=6% Similarity=0.063 Sum_probs=27.7
Q ss_pred cccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 147 ~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
.+-+..+|++.+.+ +..+..|-+|.+.++++|-.
T Consensus 145 d~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtHt 178 (266)
T TIGR00282 145 DLIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTHT 178 (266)
T ss_pred CEEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCCC
Confidence 56788899998754 56688899999999999854
No 346
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.06 E-value=3.5e+02 Score=22.58 Aligned_cols=66 Identities=15% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCCcEEE---EEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccc
Q psy9509 112 AMQGVLC---FVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184 (231)
Q Consensus 112 ~~~~~iI---F~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~ 184 (231)
.++.+|| .+.|-......++.|++.- .....+..-||=++....+++.+.+.++.++=+++|+...
T Consensus 217 ~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~G-------A~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip 285 (332)
T PRK00553 217 KNKNCLIVDDMIDTGGTVIAAAKLLKKQK-------AKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIP 285 (332)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcC-------CcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCcc
Confidence 4556666 4566677777777777651 1135577779988876666665656677888899998874
No 347
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=22.98 E-value=2.5e+02 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcc-----hHHHHHHHHHHhhh
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNT-----AQGAHRLARLLHHI 136 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s-----~~~~~~l~~~l~~~ 136 (231)
-+|.....++..+....+++||+|. .++..++.+.++..
T Consensus 147 ~eki~~~lki~~~l~~kki~ifvNl~~YLt~eei~el~~~i~~~ 190 (216)
T TIGR01866 147 LEKCLEILQIFKELTKKKLFIFINSGAFLTKDELAELQKFISYT 190 (216)
T ss_pred HHHHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHh
Confidence 3466666777777788899999996 56777777777665
No 348
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=22.75 E-value=2.8e+02 Score=19.41 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEE
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vl 177 (231)
..-...+...|......++.|+-.|.+.++.+++.+... .+.+..+. +.. +. ..+.+++
T Consensus 21 Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~----------~~~~~~~~-~~~--------~~--~~~~Div 79 (135)
T PF01488_consen 21 GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV----------NIEAIPLE-DLE--------EA--LQEADIV 79 (135)
T ss_dssp SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC----------SEEEEEGG-GHC--------HH--HHTESEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc----------ccceeeHH-HHH--------HH--HhhCCeE
Confidence 333445555566666667888888989999988888322 22222221 111 11 1246677
Q ss_pred EEcCcccccc----CcCCC----cEEEEecCCCCHHH
Q psy9509 178 VASDNLARGI----DVENI----DVVINYEAPDNIKK 206 (231)
Q Consensus 178 v~T~~~~~Gi----di~~v----~~vi~~~~p~~~~~ 206 (231)
|.+...++-+ .+... ..+++...|.+.+.
T Consensus 80 I~aT~~~~~~i~~~~~~~~~~~~~~v~Dla~Pr~i~~ 116 (135)
T PF01488_consen 80 INATPSGMPIITEEMLKKASKKLRLVIDLAVPRDIDP 116 (135)
T ss_dssp EE-SSTTSTSSTHHHHTTTCHHCSEEEES-SS-SB-T
T ss_pred EEecCCCCcccCHHHHHHHHhhhhceeccccCCCCCh
Confidence 6554433322 23333 48899988987664
No 349
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=22.65 E-value=2.5e+02 Score=23.18 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=26.6
Q ss_pred CcEEEEEc-chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 114 QGVLCFVN-TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 114 ~~~iIF~~-s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
.+++|||. +-..+..++..|... |+.+..+.|++.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~----------G~~v~~L~GG~~ 110 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQI----------GFRVPRLEGGYK 110 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHc----------CCCEEEecChHH
Confidence 35999995 566788888888876 667777888764
No 350
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=22.61 E-value=4e+02 Score=25.13 Aligned_cols=58 Identities=9% Similarity=-0.028 Sum_probs=41.7
Q ss_pred HHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHH
Q psy9509 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167 (231)
Q Consensus 104 l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~ 167 (231)
+...+....+.++.|.+.+.--|.+-++.+...+.. .++.+..+.++++..+|...++
T Consensus 110 l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~------LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 110 IAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEA------LGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred HHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHh------cCCEEEEECCCCCHHHHHHHHc
Confidence 334445567889999999977777766666554221 2788999999999988886664
No 351
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=22.59 E-value=6.7e+02 Score=24.35 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=45.5
Q ss_pred HHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc
Q psy9509 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 106 ~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
-++....+..+.|.+.+..-|.+-++.+...+.. .|..+..+.++++..+|. +.-..+|+.+|+.
T Consensus 116 ~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~------lGlsv~~i~~~~~~~~r~------~~Y~~dI~YgT~~ 180 (908)
T PRK13107 116 AYLNALTGKGVHVITVNDYLARRDAENNRPLFEF------LGLTVGINVAGLGQQEKK------AAYNADITYGTNN 180 (908)
T ss_pred HHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHh------cCCeEEEecCCCCHHHHH------hcCCCCeEEeCCC
Confidence 3445557778999999999888888888765321 278888889998865433 3335577777753
No 352
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=22.57 E-value=1.3e+02 Score=25.32 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=29.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||++-..+...+..|... ++. +..+.|++.
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~----------G~~nV~~L~GGi~ 350 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERA----------GYTGMSSLDGGIE 350 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc----------CCCCEEEecCcHH
Confidence 3467999999988889999999876 554 667888763
No 353
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=22.32 E-value=2.7e+02 Score=19.16 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=34.0
Q ss_pred cEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 115 ~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
-++|=+.+.+.+....+.+.+. +..+..-..+.++++. +.++++.. ++.+++|.+
T Consensus 69 DVvIDfT~p~~~~~~~~~~~~~----------g~~~ViGTTG~~~~~~-~~l~~~a~-~~~vl~a~N 123 (124)
T PF01113_consen 69 DVVIDFTNPDAVYDNLEYALKH----------GVPLVIGTTGFSDEQI-DELEELAK-KIPVLIAPN 123 (124)
T ss_dssp SEEEEES-HHHHHHHHHHHHHH----------T-EEEEE-SSSHHHHH-HHHHHHTT-TSEEEE-SS
T ss_pred CEEEEcCChHHhHHHHHHHHhC----------CCCEEEECCCCCHHHH-HHHHHHhc-cCCEEEeCC
Confidence 3777666888888888887776 6676666666765554 44444444 388888765
No 354
>KOG1131|consensus
Probab=22.18 E-value=6e+02 Score=23.11 Aligned_cols=86 Identities=16% Similarity=0.236 Sum_probs=45.6
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH----cCCccEE--EEcCccccc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR----RRKIDLV--VASDNLARG 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~----~~~~~vl--v~T~~~~~G 186 (231)
+.-++.|..+--=.+.++......--.+.. -.+.... -+.-+..|..-.++..+ .|.--|| |+-.-...|
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei---~k~KL~f-IetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEg 605 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEI---MKYKLLF-IETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEG 605 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHH---hhCceEE-EeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccC
Confidence 345778888865555555555443000000 0112211 12223333333444443 3444455 777888999
Q ss_pred cCcCCCc--EEEEecCCC
Q psy9509 187 IDVENID--VVINYEAPD 202 (231)
Q Consensus 187 idi~~v~--~vi~~~~p~ 202 (231)
+|+.+-- .||+++.|.
T Consensus 606 idF~hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 606 IDFDHHYGREVIMEGIPY 623 (755)
T ss_pred cccccccCceEEEEeccc
Confidence 9997544 799999995
No 355
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=22.10 E-value=3.9e+02 Score=22.48 Aligned_cols=48 Identities=13% Similarity=0.139 Sum_probs=34.4
Q ss_pred CCCcEEEEEc-chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 112 AMQGVLCFVN-TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 112 ~~~~~iIF~~-s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...+++|||. +-..+..++..|... |+.+..+.|++..- |...++.+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~----------G~~v~~L~GG~~aw-r~~~~~~~~ 135 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEA----------GIDVPRLEGGYKAY-RRFVIDTLE 135 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHc----------CCCcEEEcCCHHHH-HHhhHHHHh
Confidence 4568999995 556677888888876 77788888987653 455555554
No 356
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=22.05 E-value=3.3e+02 Score=20.10 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 101 PLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 101 ~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
..+..++++.. .+++++|.=...-....+++.|.+. +..+...+...+ +..+.. ...++
T Consensus 28 ~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~----------g~~V~v~~r~~~-----~l~~~l--~~aDi 90 (168)
T cd01080 28 PAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNR----------NATVTVCHSKTK-----NLKEHT--KQADI 90 (168)
T ss_pred HHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhC----------CCEEEEEECCch-----hHHHHH--hhCCE
Confidence 34444555443 4556666555433345588888776 656666665431 111222 34566
Q ss_pred EEE-cCccccccC---cCCCcEEEEecCCCCHH
Q psy9509 177 VVA-SDNLARGID---VENIDVVINYEAPDNIK 205 (231)
Q Consensus 177 lv~-T~~~~~Gid---i~~v~~vi~~~~p~~~~ 205 (231)
+|+ |..-. =++ +..-.++|+...|.+.+
T Consensus 91 VIsat~~~~-ii~~~~~~~~~viIDla~prdvd 122 (168)
T cd01080 91 VIVAVGKPG-LVKGDMVKPGAVVIDVGINRVPD 122 (168)
T ss_pred EEEcCCCCc-eecHHHccCCeEEEEccCCCccc
Confidence 654 43322 233 23345799999998765
No 357
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=21.93 E-value=1.3e+02 Score=19.35 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.1
Q ss_pred HHHHHHHHcCCccEEEEcCc
Q psy9509 163 NKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~ 182 (231)
..+.+.++.|+++.+|.|..
T Consensus 45 ~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 45 LAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHhcCCCeEEEEECCC
Confidence 45888999999998888753
No 358
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=21.74 E-value=4.8e+02 Score=21.80 Aligned_cols=29 Identities=14% Similarity=0.020 Sum_probs=16.1
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
+.+..+..+||.-..........+.|+..
T Consensus 71 I~~lnpd~VLIIGGp~AVs~~yE~~Lks~ 99 (337)
T COG2247 71 IIELNPDLVLIIGGPIAVSPNYENALKSL 99 (337)
T ss_pred HHhhCCceEEEECCCCcCChhHHHHHHhC
Confidence 33445556666666665555555555544
No 359
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=21.43 E-value=2.7e+02 Score=23.12 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=26.4
Q ss_pred cccEEEEcCCCCH-HHHHHHHHHHHcCCccEEEEcCc
Q psy9509 147 KMNIAEVYSDLKF-DQRNKIIQEFRRRKIDLVVASDN 182 (231)
Q Consensus 147 ~~~~~~~h~~~~~-~~r~~~~~~f~~~~~~vlv~T~~ 182 (231)
..-...+.|.|.. --|..+..-.+.|.++++|+|-+
T Consensus 55 ~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 55 DLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 3447788888844 45666666668899999999965
No 360
>PRK14725 pyruvate kinase; Provisional
Probab=21.36 E-value=6.5e+02 Score=23.16 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=47.2
Q ss_pred cCCCChHHHHHHHHHhcC--CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC--------HHHHHH
Q psy9509 95 CSTNLKPLVLYQLIRKHA--MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK--------FDQRNK 164 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~~--~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~--------~~~r~~ 164 (231)
+.....+..+.+++.+.. .-++|.=..+.+..+.+-+.+....... ...+..=-|++. +.-+++
T Consensus 453 Vrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~------~DGIMIARGDLgvEi~~e~lp~iQk~ 526 (608)
T PRK14725 453 VRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHP------RFGVMIARGDLAVEVGFERLAEVQEE 526 (608)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCC------CcEEEEECCccccccCHHHHHHHHHH
Confidence 344445555555554432 2233334444555555555544321000 123444445442 234677
Q ss_pred HHHHHHcCCccEEEEcCccccccCc
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDV 189 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi 189 (231)
++...+.-...|++||++++-=++-
T Consensus 527 Ii~~c~~~~kPVI~ATQmLESM~~~ 551 (608)
T PRK14725 527 ILWLCEAAHVPVIWATQVLESLAKK 551 (608)
T ss_pred HHHHHHHcCCCEEEEcchHhhhccC
Confidence 7777788888899999997765543
No 361
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.00 E-value=5.4e+02 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.121 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcchH-HHHHHHHHHhhh
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQ-GAHRLARLLHHI 136 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s~~-~~~~l~~~l~~~ 136 (231)
+...+.+...++...+.++||+.-+.+ .-+.+++...++
T Consensus 200 ~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~y 239 (389)
T TIGR00381 200 EKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKY 239 (389)
T ss_pred cCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHh
Confidence 556777777777778878899988888 777777777665
No 362
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [].; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....
Probab=20.95 E-value=4.4e+02 Score=21.12 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=26.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHH----HHHHHHHHhhh
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQG----AHRLARLLHHI 136 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~----~~~l~~~l~~~ 136 (231)
-..++..+++.....++.|+...... +..+.+.+++.
T Consensus 108 ~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~ 148 (348)
T PF01094_consen 108 QARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRER 148 (348)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhccc
Confidence 36678888888887788777777666 55566666554
No 363
>PLN02762 pyruvate kinase complex alpha subunit
Probab=20.58 E-value=6.2e+02 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCc
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDV 189 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi 189 (231)
..++.+++..+.-.-.|++||++++-=++-
T Consensus 290 ~~QK~II~~c~~~gKPVIvATQmLeSMi~n 319 (509)
T PLN02762 290 SVQEKIVRLCRQLNKPVIVASQLLESMIEY 319 (509)
T ss_pred HHHHHHHHHHHHhCCCEEEECchHHhhhhC
Confidence 346777888887778899999997765553
No 364
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=20.32 E-value=54 Score=20.35 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=10.6
Q ss_pred CHHHHHHHhcc-cccC
Q psy9509 203 NIKKYIHRIGR-TARG 217 (231)
Q Consensus 203 ~~~~~~qr~GR-~gR~ 217 (231)
....+.||.|| .||.
T Consensus 31 ~~~Ei~Qr~GkkiGRD 46 (70)
T PF04210_consen 31 TNAEIAQRAGKKIGRD 46 (70)
T ss_pred HHHHHHHHHhHHhhhH
Confidence 35678888888 5663
Done!