Query psy9509
Match_columns 231
No_of_seqs 150 out of 1750
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 21:21:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 2.2E-35 7.5E-40 250.7 17.6 189 5-230 217-407 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 1.4E-33 4.9E-38 237.6 15.9 190 6-231 194-384 (410)
3 2hjv_A ATP-dependent RNA helic 100.0 1.6E-32 5.6E-37 203.3 16.2 138 84-231 6-143 (163)
4 1t5i_A C_terminal domain of A 100.0 1.3E-32 4.5E-37 205.5 14.3 137 84-230 2-138 (172)
5 1xti_A Probable ATP-dependent 100.0 4.8E-32 1.6E-36 226.7 18.2 185 11-230 173-357 (391)
6 2p6n_A ATP-dependent RNA helic 100.0 2.2E-32 7.5E-37 207.5 14.6 137 83-230 25-161 (191)
7 2i4i_A ATP-dependent RNA helic 100.0 2.1E-32 7.1E-37 230.8 15.9 174 22-231 210-384 (417)
8 3eiq_A Eukaryotic initiation f 100.0 7.2E-33 2.5E-37 233.3 11.8 188 8-231 200-388 (414)
9 1s2m_A Putative ATP-dependent 100.0 6.5E-32 2.2E-36 226.7 17.0 183 12-231 184-366 (400)
10 2rb4_A ATP-dependent RNA helic 100.0 6.4E-32 2.2E-36 202.4 15.0 138 84-231 4-148 (175)
11 1fuk_A Eukaryotic initiation f 100.0 7.8E-32 2.7E-36 200.1 14.7 136 86-231 2-138 (165)
12 2jgn_A DBX, DDX3, ATP-dependen 100.0 9.8E-32 3.3E-36 203.0 14.4 140 82-231 14-154 (185)
13 3fht_A ATP-dependent RNA helic 100.0 5.1E-32 1.8E-36 227.8 14.0 187 8-230 186-379 (412)
14 3eaq_A Heat resistant RNA depe 100.0 3.7E-31 1.3E-35 204.1 17.0 136 86-231 4-139 (212)
15 3pey_A ATP-dependent RNA helic 100.0 8.7E-32 3E-36 225.0 13.1 185 10-230 165-356 (395)
16 1oyw_A RECQ helicase, ATP-depe 100.0 5.7E-31 2E-35 228.1 15.5 169 21-230 173-343 (523)
17 1hv8_A Putative ATP-dependent 100.0 5.3E-31 1.8E-35 218.2 14.7 180 11-231 167-346 (367)
18 2v1x_A ATP-dependent DNA helic 100.0 3.9E-31 1.3E-35 231.6 14.2 188 6-230 184-374 (591)
19 3i5x_A ATP-dependent RNA helic 100.0 4.3E-30 1.5E-34 224.7 20.8 184 19-231 261-450 (563)
20 3sqw_A ATP-dependent RNA helic 100.0 4.1E-30 1.4E-34 225.6 20.2 183 20-231 211-399 (579)
21 3i32_A Heat resistant RNA depe 100.0 2.7E-30 9.3E-35 208.4 16.1 135 87-231 2-136 (300)
22 3fmp_B ATP-dependent RNA helic 100.0 8.9E-33 3.1E-37 237.4 0.0 188 7-230 252-446 (479)
23 1fuu_A Yeast initiation factor 100.0 4.9E-32 1.7E-36 226.7 -0.9 185 11-231 182-367 (394)
24 2yjt_D ATP-dependent RNA helic 99.9 1.1E-31 3.8E-36 200.2 0.0 136 86-231 2-138 (170)
25 3fho_A ATP-dependent RNA helic 100.0 1.5E-30 5E-35 225.1 4.9 187 8-230 277-470 (508)
26 2z0m_A 337AA long hypothetical 100.0 8.8E-29 3E-33 202.7 12.7 172 12-228 150-321 (337)
27 3oiy_A Reverse gyrase helicase 99.9 1.9E-27 6.4E-32 200.7 8.4 124 85-228 228-363 (414)
28 3l9o_A ATP-dependent RNA helic 99.9 3.4E-26 1.2E-30 212.0 14.4 130 101-230 429-597 (1108)
29 1yks_A Genome polyprotein [con 99.9 2.7E-26 9.3E-31 194.9 9.8 100 113-227 177-296 (440)
30 2xgj_A ATP-dependent RNA helic 99.9 3E-25 1E-29 204.1 16.7 132 99-230 329-499 (1010)
31 2whx_A Serine protease/ntpase/ 99.9 2.3E-25 8E-30 195.8 12.3 101 113-228 355-476 (618)
32 1wp9_A ATP-dependent RNA helic 99.9 2.2E-24 7.6E-29 184.1 17.5 124 96-230 340-475 (494)
33 2eyq_A TRCF, transcription-rep 99.9 3E-25 1E-29 206.7 12.9 179 13-230 742-922 (1151)
34 2jlq_A Serine protease subunit 99.9 3.6E-25 1.2E-29 188.7 11.3 102 113-229 188-310 (451)
35 2va8_A SSO2462, SKI2-type heli 99.9 1.2E-24 4.2E-29 195.2 15.3 129 100-230 241-408 (715)
36 2xau_A PRE-mRNA-splicing facto 99.9 3E-26 1E-30 206.0 4.8 177 21-230 239-443 (773)
37 1tf5_A Preprotein translocase 99.9 4E-25 1.4E-29 196.0 11.6 129 91-231 408-546 (844)
38 2zj8_A DNA helicase, putative 99.9 2.1E-24 7.3E-29 193.7 16.4 132 98-231 224-388 (720)
39 2z83_A Helicase/nucleoside tri 99.9 2.2E-25 7.4E-30 190.4 9.4 103 113-230 190-313 (459)
40 3jux_A Protein translocase sub 99.9 1.3E-24 4.4E-29 189.4 14.1 168 24-231 411-588 (822)
41 2d7d_A Uvrabc system protein B 99.9 3.9E-24 1.3E-28 189.6 16.7 121 99-230 429-556 (661)
42 2p6r_A Afuhel308 helicase; pro 99.9 3.2E-24 1.1E-28 192.0 16.2 129 100-230 231-388 (702)
43 1c4o_A DNA nucleotide excision 99.9 8.3E-24 2.8E-28 187.6 18.5 122 98-230 422-550 (664)
44 2wv9_A Flavivirin protease NS2 99.9 5.7E-25 2E-29 194.6 10.5 101 112-227 409-530 (673)
45 2ykg_A Probable ATP-dependent 99.9 1.6E-25 5.4E-30 200.3 4.2 125 97-229 378-515 (696)
46 4a4z_A Antiviral helicase SKI2 99.9 6.3E-24 2.2E-28 195.3 14.8 134 94-228 317-490 (997)
47 4ddu_A Reverse gyrase; topoiso 99.9 7.6E-25 2.6E-29 203.0 8.6 99 84-202 284-388 (1104)
48 1gm5_A RECG; helicase, replica 99.9 8.2E-25 2.8E-29 196.0 8.2 123 99-229 562-696 (780)
49 2v6i_A RNA helicase; membrane, 99.9 3.8E-24 1.3E-28 181.3 11.6 105 107-227 166-288 (431)
50 2fsf_A Preprotein translocase 99.9 9.3E-24 3.2E-28 187.0 12.9 168 24-231 378-584 (853)
51 1gku_B Reverse gyrase, TOP-RG; 99.9 2.9E-24 1E-28 198.9 8.3 135 20-201 213-352 (1054)
52 3o8b_A HCV NS3 protease/helica 99.9 7E-24 2.4E-28 185.9 9.3 100 112-231 395-515 (666)
53 2fwr_A DNA repair protein RAD2 99.9 2.6E-23 9E-28 178.1 11.8 116 95-225 331-447 (472)
54 2oca_A DAR protein, ATP-depend 99.9 1.4E-23 4.7E-28 181.5 8.2 120 98-228 330-453 (510)
55 1nkt_A Preprotein translocase 99.9 7.8E-23 2.7E-27 181.5 12.2 129 91-231 436-618 (922)
56 4f92_B U5 small nuclear ribonu 99.9 1.8E-22 6.1E-27 193.4 15.1 188 15-230 1076-1308(1724)
57 1z5z_A Helicase of the SNF2/RA 99.9 1.1E-22 3.7E-27 162.0 11.3 125 95-228 92-222 (271)
58 4a2p_A RIG-I, retinoic acid in 99.9 2.9E-23 1E-27 180.7 8.8 132 97-230 370-508 (556)
59 4f92_B U5 small nuclear ribonu 99.9 6.1E-23 2.1E-27 196.5 11.6 187 17-231 239-474 (1724)
60 4a2q_A RIG-I, retinoic acid in 99.9 1.6E-22 5.5E-27 183.3 9.3 131 97-229 611-748 (797)
61 3tbk_A RIG-I helicase domain; 99.9 8.7E-23 3E-27 177.6 6.8 132 97-230 369-507 (555)
62 3dmq_A RNA polymerase-associat 99.9 6.6E-22 2.3E-26 182.0 11.4 125 94-227 484-610 (968)
63 3rc3_A ATP-dependent RNA helic 99.9 5E-22 1.7E-26 175.6 8.9 103 114-227 321-442 (677)
64 4gl2_A Interferon-induced heli 99.9 1.7E-21 5.7E-26 174.3 12.1 116 99-218 381-509 (699)
65 4a2w_A RIG-I, retinoic acid in 99.8 1.6E-21 5.6E-26 179.0 10.0 131 97-229 611-748 (936)
66 3h1t_A Type I site-specific re 99.8 1.4E-19 4.7E-24 159.1 15.3 111 106-219 431-545 (590)
67 1z63_A Helicase of the SNF2/RA 99.8 2.7E-19 9.2E-24 154.2 12.1 121 96-225 322-446 (500)
68 1z3i_X Similar to RAD54-like; 99.8 2.9E-18 1E-22 151.9 15.1 118 98-225 398-521 (644)
69 3mwy_W Chromo domain-containin 99.8 4.4E-18 1.5E-22 154.2 11.7 119 97-225 554-677 (800)
70 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 1.1E-12 3.6E-17 121.0 14.0 115 113-228 537-707 (1038)
71 2ipc_A Preprotein translocase 99.1 3.5E-10 1.2E-14 101.2 11.0 138 92-231 420-699 (997)
72 2vl7_A XPD; helicase, unknown 99.0 1.2E-09 4.2E-14 94.8 9.7 109 103-228 375-519 (540)
73 4a15_A XPD helicase, ATP-depen 98.6 4.2E-07 1.4E-11 80.1 12.8 103 112-228 447-582 (620)
74 3crv_A XPD/RAD3 related DNA he 98.4 1.2E-05 4.2E-10 69.9 15.0 101 112-228 392-529 (551)
75 3hgt_A HDA1 complex subunit 3; 98.3 3.6E-06 1.2E-10 67.7 9.4 119 95-228 105-235 (328)
76 1q0u_A Bstdead; DEAD protein, 97.0 0.00014 4.8E-09 55.2 0.6 47 7-53 166-212 (219)
77 1wrb_A DJVLGB; RNA helicase, D 96.5 0.0004 1.4E-08 53.9 -0.3 32 22-53 209-240 (253)
78 1gm5_A RECG; helicase, replica 96.4 0.015 5.3E-07 52.4 9.5 80 112-197 416-496 (780)
79 1qde_A EIF4A, translation init 96.3 0.00042 1.4E-08 52.6 -1.1 46 8-53 172-217 (224)
80 3oiy_A Reverse gyrase helicase 95.7 0.036 1.2E-06 45.9 8.1 79 112-197 63-145 (414)
81 4ddu_A Reverse gyrase; topoiso 94.7 0.15 5E-06 48.0 9.5 94 97-197 103-202 (1104)
82 2eyq_A TRCF, transcription-rep 94.5 0.2 6.8E-06 47.3 10.0 80 112-197 651-731 (1151)
83 1oyw_A RECQ helicase, ATP-depe 92.9 0.36 1.2E-05 41.5 8.1 59 113-181 65-123 (523)
84 2v1x_A ATP-dependent DNA helic 92.2 0.39 1.3E-05 42.0 7.4 60 112-181 83-144 (591)
85 3ber_A Probable ATP-dependent 91.5 1.6 5.4E-05 33.3 9.5 76 112-197 110-192 (249)
86 2oxc_A Probable ATP-dependent 90.9 0.73 2.5E-05 34.6 7.0 91 97-197 71-172 (230)
87 3bor_A Human initiation factor 90.7 0.7 2.4E-05 34.9 6.7 77 112-197 97-179 (237)
88 2gxq_A Heat resistant RNA depe 90.4 1.1 3.8E-05 32.7 7.5 74 112-197 71-150 (207)
89 3ly5_A ATP-dependent RNA helic 90.1 3.6 0.00012 31.5 10.4 76 112-197 125-207 (262)
90 3fe2_A Probable ATP-dependent 89.8 1.3 4.4E-05 33.5 7.6 76 112-197 101-182 (242)
91 1t6n_A Probable ATP-dependent 89.5 4.9 0.00017 29.5 10.5 93 97-197 61-164 (220)
92 2l82_A Designed protein OR32; 89.4 2.1 7.1E-05 28.1 7.1 49 116-174 5-53 (162)
93 2pl3_A Probable ATP-dependent 89.2 1.9 6.6E-05 32.3 8.1 75 112-197 96-177 (236)
94 1vec_A ATP-dependent RNA helic 88.5 1.6 5.5E-05 31.8 7.1 91 98-197 51-152 (206)
95 1gku_B Reverse gyrase, TOP-RG; 88.4 1.1 3.9E-05 41.9 7.4 92 98-197 82-181 (1054)
96 1qde_A EIF4A, translation init 86.3 0.88 3E-05 33.8 4.5 90 97-197 61-161 (224)
97 2db3_A ATP-dependent RNA helic 86.1 2.8 9.5E-05 34.8 7.9 75 113-197 129-209 (434)
98 1wrb_A DJVLGB; RNA helicase, D 86.0 2.4 8.2E-05 32.1 7.0 74 114-197 101-180 (253)
99 1xti_A Probable ATP-dependent 85.6 2.7 9.3E-05 33.9 7.5 92 98-197 56-158 (391)
100 3iuy_A Probable ATP-dependent 85.0 2.2 7.5E-05 31.7 6.2 75 112-197 93-173 (228)
101 1fuu_A Yeast initiation factor 84.1 3.1 0.00011 33.5 7.2 75 112-197 88-168 (394)
102 2i4i_A ATP-dependent RNA helic 83.4 7.4 0.00025 31.6 9.3 74 114-197 102-181 (417)
103 1wp9_A ATP-dependent RNA helic 83.0 8.5 0.00029 31.6 9.6 89 98-197 34-131 (494)
104 1c4o_A DNA nucleotide excision 82.9 12 0.00041 33.1 10.8 88 91-187 32-144 (664)
105 3fmo_B ATP-dependent RNA helic 82.7 1.3 4.5E-05 34.9 4.3 89 97-197 141-241 (300)
106 1hv8_A Putative ATP-dependent 82.5 5.3 0.00018 31.6 7.9 90 97-197 54-153 (367)
107 3tbk_A RIG-I helicase domain; 82.3 2.6 8.8E-05 35.8 6.3 75 113-197 52-133 (555)
108 4a2q_A RIG-I, retinoic acid in 82.0 4.8 0.00016 36.3 8.1 75 113-197 296-377 (797)
109 4a2p_A RIG-I, retinoic acid in 81.4 3.8 0.00013 34.8 7.0 75 113-197 55-136 (556)
110 1s2m_A Putative ATP-dependent 80.7 6.8 0.00023 31.6 8.1 91 97-197 68-169 (400)
111 1tf5_A Preprotein translocase 80.5 6.8 0.00023 35.6 8.3 72 98-181 107-180 (844)
112 2fsf_A Preprotein translocase 80.4 5.9 0.0002 36.0 7.9 72 98-181 98-171 (853)
113 3gk5_A Uncharacterized rhodane 79.6 2.9 9.8E-05 27.3 4.5 44 105-158 46-90 (108)
114 2d7d_A Uvrabc system protein B 77.9 19 0.00066 31.7 10.5 112 91-211 36-176 (661)
115 2z0m_A 337AA long hypothetical 77.0 19 0.00064 28.0 9.4 88 98-197 42-135 (337)
116 2ipc_A Preprotein translocase 76.6 8 0.00027 35.6 7.6 62 108-181 115-176 (997)
117 1nkt_A Preprotein translocase 76.3 9.6 0.00033 34.9 8.0 62 108-181 147-208 (922)
118 3hjh_A Transcription-repair-co 76.2 22 0.00074 30.1 9.9 115 90-214 17-148 (483)
119 3g5j_A Putative ATP/GTP bindin 76.0 3.9 0.00013 27.4 4.5 35 114-158 90-125 (134)
120 1q0u_A Bstdead; DEAD protein, 75.9 1.8 6.2E-05 32.0 2.9 79 113-197 72-156 (219)
121 2fz4_A DNA repair protein RAD2 75.9 21 0.00071 26.7 9.0 61 97-181 118-179 (237)
122 1wv9_A Rhodanese homolog TT165 75.4 3.5 0.00012 26.0 3.9 35 114-158 54-88 (94)
123 3foj_A Uncharacterized protein 75.4 2.6 9.1E-05 26.9 3.3 37 112-158 55-91 (100)
124 3iwh_A Rhodanese-like domain p 74.4 2.4 8.3E-05 27.5 2.9 36 112-157 55-90 (103)
125 3eme_A Rhodanese-like domain p 74.2 2.5 8.4E-05 27.2 2.9 37 112-158 55-91 (103)
126 3eiq_A Eukaryotic initiation f 71.4 4.1 0.00014 33.1 4.3 91 98-197 88-189 (414)
127 4gl2_A Interferon-induced heli 71.2 1.6 5.5E-05 38.6 1.8 73 114-197 57-142 (699)
128 2fwr_A DNA repair protein RAD2 71.1 17 0.00058 30.2 8.1 61 97-181 118-179 (472)
129 2j0s_A ATP-dependent RNA helic 69.9 41 0.0014 27.0 10.9 91 97-197 84-185 (410)
130 3b6e_A Interferon-induced heli 69.6 5 0.00017 29.2 4.0 74 113-197 82-168 (216)
131 1gmx_A GLPE protein; transfera 69.3 7.8 0.00027 25.0 4.6 43 106-158 50-94 (108)
132 2jtq_A Phage shock protein E; 68.4 12 0.00043 22.7 5.2 25 112-136 40-64 (85)
133 2oca_A DAR protein, ATP-depend 68.2 16 0.00055 30.7 7.4 87 98-197 139-231 (510)
134 3flh_A Uncharacterized protein 67.6 5.6 0.00019 26.5 3.6 44 105-158 62-108 (124)
135 3hix_A ALR3790 protein; rhodan 67.2 4.5 0.00016 26.2 3.0 37 112-158 51-88 (106)
136 2ykg_A Probable ATP-dependent 67.0 14 0.00047 32.5 7.0 74 114-197 62-142 (696)
137 1tq1_A AT5G66040, senescence-a 66.1 6 0.00021 26.6 3.6 37 112-158 81-118 (129)
138 3sqw_A ATP-dependent RNA helic 65.3 32 0.0011 29.5 8.8 79 114-197 96-181 (579)
139 3l9o_A ATP-dependent RNA helic 64.9 10 0.00035 35.8 5.8 48 112-180 226-273 (1108)
140 4a2w_A RIG-I, retinoic acid in 64.2 6.6 0.00023 36.2 4.4 75 113-197 296-377 (936)
141 3dkp_A Probable ATP-dependent 63.0 5 0.00017 30.1 3.0 92 97-197 76-181 (245)
142 2k0z_A Uncharacterized protein 62.7 9.3 0.00032 24.8 3.9 37 112-158 55-91 (110)
143 2hhg_A Hypothetical protein RP 62.5 6.5 0.00022 26.7 3.2 37 112-158 85-122 (139)
144 1qxn_A SUD, sulfide dehydrogen 61.9 6.6 0.00022 26.8 3.1 37 112-158 81-118 (137)
145 2fsx_A RV0390, COG0607: rhodan 61.4 8.2 0.00028 26.6 3.6 37 112-158 79-116 (148)
146 3i5x_A ATP-dependent RNA helic 61.3 9.1 0.00031 32.7 4.6 79 114-197 147-232 (563)
147 3nhv_A BH2092 protein; alpha-b 60.7 6.5 0.00022 27.1 3.0 37 112-158 71-109 (144)
148 3ipz_A Monothiol glutaredoxin- 57.6 35 0.0012 21.9 7.5 57 112-178 16-78 (109)
149 3d1p_A Putative thiosulfate su 56.8 8 0.00027 26.2 2.9 37 112-158 90-127 (139)
150 3ilm_A ALR3790 protein; rhodan 54.8 9.6 0.00033 26.1 3.0 37 112-158 55-92 (141)
151 3pey_A ATP-dependent RNA helic 52.4 61 0.0021 25.6 8.0 87 97-197 54-151 (395)
152 1vee_A Proline-rich protein fa 52.3 13 0.00044 25.1 3.3 36 113-158 74-110 (134)
153 3zyw_A Glutaredoxin-3; metal b 51.9 46 0.0016 21.5 7.6 57 112-178 14-76 (111)
154 4f67_A UPF0176 protein LPG2838 51.2 19 0.00064 27.9 4.4 42 107-158 175-217 (265)
155 2p6r_A Afuhel308 helicase; pro 49.9 30 0.001 30.6 6.1 72 112-197 67-144 (702)
156 4a4z_A Antiviral helicase SKI2 49.2 58 0.002 30.3 8.0 39 112-158 81-119 (997)
157 3gr1_A Protein PRGH; type III 46.7 88 0.003 23.5 7.2 63 100-173 4-75 (227)
158 3sxu_A DNA polymerase III subu 45.9 42 0.0014 23.3 5.2 36 100-135 24-61 (150)
159 2yan_A Glutaredoxin-3; oxidore 45.1 56 0.0019 20.6 7.8 57 112-178 15-77 (105)
160 1urh_A 3-mercaptopyruvate sulf 44.9 37 0.0013 26.0 5.3 46 103-158 217-266 (280)
161 3fht_A ATP-dependent RNA helic 44.6 21 0.0007 28.7 3.9 89 97-197 74-174 (412)
162 1vp8_A Hypothetical protein AF 44.4 57 0.002 23.9 5.7 65 109-183 40-108 (201)
163 3gr0_A Protein PRGH; type III 43.9 87 0.003 22.9 6.7 50 113-173 26-75 (197)
164 2xgj_A ATP-dependent RNA helic 43.7 29 0.001 32.3 5.1 49 112-181 128-176 (1010)
165 1rif_A DAR protein, DNA helica 43.2 50 0.0017 25.1 5.8 71 98-181 139-212 (282)
166 1uar_A Rhodanese; sulfurtransf 42.8 36 0.0012 26.0 5.0 47 102-158 219-270 (285)
167 3o8b_A HCV NS3 protease/helica 41.7 78 0.0027 28.0 7.3 78 98-197 243-324 (666)
168 4fn4_A Short chain dehydrogena 40.7 1.2E+02 0.004 23.0 8.0 59 112-180 30-91 (254)
169 3cnb_A DNA-binding response re 38.4 79 0.0027 20.4 7.2 102 100-217 20-130 (143)
170 3fmp_B ATP-dependent RNA helic 35.7 24 0.00084 29.3 3.1 89 97-197 141-241 (479)
171 3tg1_B Dual specificity protei 35.6 26 0.00088 24.3 2.8 35 113-157 93-136 (158)
172 3h11_B Caspase-8; cell death, 35.4 1.2E+02 0.0039 23.4 6.7 39 122-171 47-85 (271)
173 2zj8_A DNA helicase, putative 34.4 35 0.0012 30.3 4.0 55 113-181 68-122 (720)
174 2eg4_A Probable thiosulfate su 34.2 27 0.00092 25.9 2.8 37 112-158 183-219 (230)
175 3hjh_A Transcription-repair-co 33.7 69 0.0023 27.0 5.5 75 101-198 371-445 (483)
176 1e0c_A Rhodanese, sulfurtransf 33.5 33 0.0011 26.1 3.3 36 112-157 222-258 (271)
177 2wci_A Glutaredoxin-4; redox-a 32.2 1.2E+02 0.004 20.5 6.4 55 114-178 35-95 (135)
178 2wlr_A Putative thiosulfate su 32.1 68 0.0023 26.3 5.2 46 102-157 189-238 (423)
179 1z63_A Helicase of the SNF2/RA 32.0 70 0.0024 26.6 5.4 52 112-181 85-136 (500)
180 3h11_A CAsp8 and FADD-like apo 31.9 40 0.0014 26.1 3.5 48 113-171 43-90 (272)
181 3i2v_A Adenylyltransferase and 31.7 49 0.0017 21.5 3.6 41 115-158 74-114 (127)
182 1wik_A Thioredoxin-like protei 31.6 1E+02 0.0034 19.5 7.3 56 113-178 14-75 (109)
183 4g81_D Putative hexonate dehyd 31.5 1.4E+02 0.005 22.5 6.6 59 112-180 32-93 (255)
184 3h1t_A Type I site-specific re 31.4 54 0.0019 28.1 4.7 25 112-136 234-259 (590)
185 1pyo_A Caspase-2; apoptosis, c 31.2 1.4E+02 0.0047 21.1 6.7 48 113-171 33-94 (167)
186 3aay_A Putative thiosulfate su 30.9 70 0.0024 24.2 4.8 45 103-157 213-262 (277)
187 3e4c_A Caspase-1; zymogen, inf 30.5 1.5E+02 0.0051 23.2 6.7 47 114-171 61-118 (302)
188 3gx8_A Monothiol glutaredoxin- 29.4 1.2E+02 0.0041 19.8 8.0 25 112-136 14-44 (121)
189 3dmn_A Putative DNA helicase; 28.9 1.5E+02 0.0051 20.7 6.0 64 112-200 60-123 (174)
190 3hzu_A Thiosulfate sulfurtrans 28.9 80 0.0027 24.8 4.9 35 102-136 97-135 (318)
191 1urh_A 3-mercaptopyruvate sulf 28.8 33 0.0011 26.3 2.6 35 102-136 72-110 (280)
192 2j6p_A SB(V)-AS(V) reductase; 28.4 87 0.003 21.4 4.6 44 104-158 59-111 (152)
193 1u6t_A SH3 domain-binding glut 28.2 89 0.003 20.8 4.3 40 120-169 13-52 (121)
194 1rhs_A Sulfur-substituted rhod 27.8 62 0.0021 25.0 4.0 46 103-158 227-276 (296)
195 2h54_A Caspase-1; allosteric s 27.7 1.7E+02 0.0057 20.9 6.5 47 114-171 44-101 (178)
196 1e0c_A Rhodanese, sulfurtransf 27.3 52 0.0018 24.9 3.5 34 103-136 68-105 (271)
197 3aay_A Putative thiosulfate su 26.8 66 0.0022 24.4 4.0 45 103-157 64-113 (277)
198 4e7p_A Response regulator; DNA 26.6 1.4E+02 0.0047 19.6 6.1 110 92-217 23-140 (150)
199 3mwy_W Chromo domain-containin 26.3 1.2E+02 0.0042 27.2 6.2 61 112-181 285-353 (800)
200 2q5c_A NTRC family transcripti 26.3 1.8E+02 0.0063 20.9 7.6 87 114-219 5-95 (196)
201 2fp3_A Caspase NC; apoptosis, 25.6 1.8E+02 0.0062 22.9 6.4 47 114-171 62-120 (316)
202 2dko_A Caspase-3; low barrier 25.2 1.7E+02 0.0057 20.1 6.8 40 122-172 39-78 (146)
203 2va8_A SSO2462, SKI2-type heli 24.8 1.5E+02 0.0053 26.0 6.5 71 97-181 56-129 (715)
204 1m72_A Caspase-1; caspase, cys 24.6 1.9E+02 0.0065 22.2 6.2 38 123-171 55-92 (272)
205 1uar_A Rhodanese; sulfurtransf 24.0 53 0.0018 25.1 3.0 34 103-136 66-103 (285)
206 2eg4_A Probable thiosulfate su 24.0 1.6E+02 0.0055 21.5 5.6 33 113-156 61-95 (230)
207 3ntd_A FAD-dependent pyridine 23.5 56 0.0019 27.7 3.3 37 112-158 523-559 (565)
208 3olh_A MST, 3-mercaptopyruvate 23.4 46 0.0016 25.9 2.5 47 102-158 240-290 (302)
209 3qhq_A CSN2, SAG0897 family cr 23.1 2E+02 0.0067 21.5 5.8 37 100-136 148-189 (229)
210 1t1v_A SH3BGRL3, SH3 domain-bi 22.9 1.3E+02 0.0046 18.2 4.3 45 115-169 3-54 (93)
211 1vlj_A NADH-dependent butanol 22.7 3.1E+02 0.011 22.2 8.5 68 102-179 32-107 (407)
212 3s5u_A Putative uncharacterize 22.4 2E+02 0.0069 21.3 5.8 37 100-136 148-189 (220)
213 3r1i_A Short-chain type dehydr 22.2 2.5E+02 0.0087 21.1 7.2 59 112-180 55-116 (276)
214 1nw9_B Caspase 9, apoptosis-re 21.3 2.8E+02 0.0095 21.2 6.9 37 124-171 46-82 (277)
215 3fho_A ATP-dependent RNA helic 21.2 84 0.0029 26.4 3.9 87 97-197 168-265 (508)
216 1qtn_A Caspase-8; apoptosis, d 21.2 2.2E+02 0.0075 19.9 6.9 39 123-172 54-92 (164)
217 2nn3_C Caspase-1; cysteine pro 20.9 2.5E+02 0.0086 22.0 6.3 47 114-171 61-120 (310)
218 3ics_A Coenzyme A-disulfide re 20.7 68 0.0023 27.5 3.3 37 112-158 540-576 (588)
219 3eul_A Possible nitrate/nitrit 20.3 1.9E+02 0.0065 18.9 6.9 111 91-217 17-135 (152)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.2e-35 Score=250.71 Aligned_cols=189 Identities=25% Similarity=0.407 Sum_probs=165.0
Q ss_pred CCcceeeeeccccC--CCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccc
Q psy9509 5 GVGGLVIMWDTFLT--YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82 (231)
Q Consensus 5 ~~~~~~~~~~i~~~--~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
++++...+..++.. .+.++|+++||||+|.++..++..++.++..+.+... .
T Consensus 217 ~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~--------------------------~ 270 (434)
T 2db3_A 217 DMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIV--------------------------G 270 (434)
T ss_dssp STTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESST--------------------------T
T ss_pred ccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccc--------------------------c
Confidence 44555555566555 3678999999999999999999999988877665411 1
Q ss_pred cCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 83 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
....++.+.+..+....|...|.+++..... ++||||++++.++.+++.|.+. ++.+..+||++++.+|
T Consensus 271 ~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~----------~~~~~~lhg~~~~~~R 339 (434)
T 2db3_A 271 GACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEK----------EFPTTSIHGDRLQSQR 339 (434)
T ss_dssp CCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTTSCHHHH
T ss_pred ccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHH
Confidence 2345677778888888899999999988765 4999999999999999999987 8899999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.+++++|++|+.+|||||+++++|+|+|++++||++|.|.+..+|+||+||+||.|+.|.+++|++++
T Consensus 340 ~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 340 EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp HHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred HHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999864
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.4e-33 Score=237.57 Aligned_cols=190 Identities=25% Similarity=0.419 Sum_probs=164.6
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
.++...+..++..++.+.|++++|||+|+++..+...++.+|..+.... .....
T Consensus 194 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~ 247 (410)
T 2j0s_A 194 KGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKR--------------------------DELTL 247 (410)
T ss_dssp TTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCG--------------------------GGCSC
T ss_pred hhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecC--------------------------ccccC
Confidence 3445556667788888999999999999888888888888887665431 11234
Q ss_pred ccccceeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH
Q psy9509 86 AELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164 (231)
Q Consensus 86 ~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~ 164 (231)
..+.+.+..+.... |...+..++......++||||++++.++.+++.|... +..+..+||++++.+|..
T Consensus 248 ~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~ 317 (410)
T 2j0s_A 248 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----------NFTVSSMHGDMPQKERES 317 (410)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHH
T ss_pred CCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhC----------CCceEEeeCCCCHHHHHH
Confidence 45666666666544 8899999998888789999999999999999999887 889999999999999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++++|++|+.+|||||+++++|+|+|++++||+++.|++...|+||+||+||.|+.|.+++|+++.|
T Consensus 318 ~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (410)
T 2j0s_A 318 IMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDD 384 (410)
T ss_dssp HHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGG
T ss_pred HHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 3
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=100.00 E-value=1.6e-32 Score=203.34 Aligned_cols=138 Identities=28% Similarity=0.497 Sum_probs=131.6
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
.+.++++.+..++.+.|...|.+++....+.++||||+++..++.+++.|... ++.+..+||++++.+|.
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~ 75 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL----------GYPCDKIHGGMIQEDRF 75 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHH
Confidence 46679999999999999999999999888889999999999999999999887 88999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.++++|+.|+.+|||||+++++|+|+|++++||+++.|++..+|+||+||+||.|+.|.+++|+++.|
T Consensus 76 ~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 143 (163)
T 2hjv_A 76 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFE 143 (163)
T ss_dssp HHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGG
T ss_pred HHHHHHHcCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998754
No 4
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-32 Score=205.53 Aligned_cols=137 Identities=25% Similarity=0.454 Sum_probs=129.1
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~ 163 (231)
++.+++|++..++.+.|...|.++++...+.++||||+++..++.+++.|... ++.+..+||++++.+|.
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~hg~~~~~~r~ 71 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERL 71 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHH
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----------CCCEEEEECCCCHHHHH
Confidence 35678999999999999999999999888889999999999999999999887 88999999999999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.++++|+.|+.+|||||+++++|+|+|++++||++|.|++...|+||+||+||.|+.|.+++|+++.
T Consensus 72 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 72 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp HHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred HHHHHHHCCCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 9999999999999999999999999999999999999999999999999999999999999999763
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.8e-32 Score=226.65 Aligned_cols=185 Identities=25% Similarity=0.386 Sum_probs=162.0
Q ss_pred eeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccc
Q psy9509 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSE 90 (231)
Q Consensus 11 ~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
.+..++...+..+|++++|||+++.+..+...++.+|..+...... ......+.+
T Consensus 173 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 227 (391)
T 1xti_A 173 DVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDET-------------------------KLTLHGLQQ 227 (391)
T ss_dssp HHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCC-------------------------CCCCTTCEE
T ss_pred HHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCcc-------------------------ccCcccceE
Confidence 3444566677889999999999999998888888888766543111 112345666
Q ss_pred eeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
.+..+....|...+..++....++++||||++++.++.+++.|... +..+..+||++++.+|.+++++|+
T Consensus 228 ~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~ 297 (391)
T 1xti_A 228 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----------NFPAIAIHRGMPQEERLSRYQQFK 297 (391)
T ss_dssp EEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHHHHHh
Confidence 7777788889999999999888889999999999999999999887 788999999999999999999999
Q ss_pred cCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 171 RRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+|+.+|||||+++++|+|+|++++||+++.|++..+|+||+||+||.|+.|.+++++++.
T Consensus 298 ~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~ 357 (391)
T 1xti_A 298 DFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDE 357 (391)
T ss_dssp TTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSH
T ss_pred cCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEccc
Confidence 999999999999999999999999999999999999999999999999999999999864
No 6
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=207.52 Aligned_cols=137 Identities=26% Similarity=0.472 Sum_probs=124.6
Q ss_pred cCcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 83 ~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
..+.++.+.+..++.+.|...|.+++.... .++||||+++..++.+++.|... ++.+..+||++++.+|
T Consensus 25 ~~~~~i~q~~~~~~~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~~R 93 (191)
T 2p6n_A 25 AASLDVIQEVEYVKEEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLK----------GVEAVAIHGGKDQEER 93 (191)
T ss_dssp ---CCSEEEEEECCGGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHH
T ss_pred CCCcCceEEEEEcChHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHH
Confidence 356789999999999999999999997754 58999999999999999999887 8899999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.+++++|+.|+.+|||||+++++|+|+|++++||++|.|++...|+||+||+||.|+.|.+++|+++.
T Consensus 94 ~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 94 TKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp HHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred HHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
No 7
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=230.77 Aligned_cols=174 Identities=27% Similarity=0.410 Sum_probs=152.9
Q ss_pred CCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCChH
Q psy9509 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKP 101 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 101 (231)
.+|+++||||+|..+..+...++.+|..+.... ....+.++.+.+..+....|.
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~i~~~~~~~~~~~~~ 263 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR--------------------------VGSTSENITQKVVWVEESDKR 263 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC------------------------------CCSSEEEEEEECCGGGHH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC--------------------------CCCCccCceEEEEEeccHhHH
Confidence 689999999999888888888888886655431 112345677778888888999
Q ss_pred HHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 102 LVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 102 ~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
..+.+++... .+.++||||++++.++.+++.|.+. ++.+..+||++++.+|.+++++|++|+.+|||||
T Consensus 264 ~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT 333 (417)
T 2i4i_A 264 SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 333 (417)
T ss_dssp HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC
T ss_pred HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC
Confidence 9999999877 5678999999999999999999887 8899999999999999999999999999999999
Q ss_pred CccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 181 DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 181 ~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++|++++|
T Consensus 334 ~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 384 (417)
T 2i4i_A 334 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 384 (417)
T ss_dssp HHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGG
T ss_pred ChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcccc
Confidence 999999999999999999999999999999999999999999999998754
No 8
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=7.2e-33 Score=233.28 Aligned_cols=188 Identities=28% Similarity=0.432 Sum_probs=148.2
Q ss_pred ceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccc
Q psy9509 8 GLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAE 87 (231)
Q Consensus 8 ~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
+...+..++..+++++|+++||||++.++..+...++.+|..+..... ......
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 253 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE--------------------------ELTLEG 253 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCC--------------------------CCCTTS
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCC--------------------------ccCCCC
Confidence 444556677788889999999999998889899998888876654311 122344
Q ss_pred ccceeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHH
Q psy9509 88 LSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166 (231)
Q Consensus 88 ~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~ 166 (231)
+.+.+..+.. +.|...+..++.....+++||||++++.++.+++.|... +..+..+||++++.+|..++
T Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 254 IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR----------DFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp CCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT----------TCCCEEC---CHHHHHHHHH
T ss_pred ceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc----------CCeEEEecCCCCHHHHHHHH
Confidence 5555555544 558999999998888889999999999999999999887 88999999999999999999
Q ss_pred HHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 167 ~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.|+.|+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|+.|.+++++++.|
T Consensus 324 ~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 388 (414)
T 3eiq_A 324 REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 388 (414)
T ss_dssp HHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTH
T ss_pred HHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998753
No 9
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.98 E-value=6.5e-32 Score=226.65 Aligned_cols=183 Identities=27% Similarity=0.424 Sum_probs=159.8
Q ss_pred eeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 12 ~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
+..++..++...|+++||||+|..+.......+.+|..+.... .....++.+.
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 236 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME---------------------------ELTLKGITQY 236 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS---------------------------SCBCTTEEEE
T ss_pred HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc---------------------------ccccCCceeE
Confidence 3445666777899999999999888888877777776544320 1123456667
Q ss_pred eeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+..+....|...+..++.....+++||||++++.++.+++.|+.. +..+..+||+++..+|..++++|++
T Consensus 237 ~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~ 306 (400)
T 1s2m_A 237 YAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL----------GYSCYYSHARMKQQERNKVFHEFRQ 306 (400)
T ss_dssp EEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----------TCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhc----------CCCeEEecCCCCHHHHHHHHHHHhc
Confidence 777778889999999998888889999999999999999999987 8899999999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|+.+|||||+++++|+|+|++++||+++.|++..+|+||+||+||.|+.|.++++++++|
T Consensus 307 g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~ 366 (400)
T 1s2m_A 307 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366 (400)
T ss_dssp TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGG
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccch
Confidence 999999999999999999999999999999999999999999999999999999998764
No 10
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.98 E-value=6.4e-32 Score=202.43 Aligned_cols=138 Identities=27% Similarity=0.485 Sum_probs=126.3
Q ss_pred CcccccceeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 84 TPAELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
++.+++|.+..++... |...|.++++...++++||||+++..++.++..|... +..+..+||++++.+|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----------GHQVSLLSGELTVEQR 73 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECSSCCHHHH
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHH
Confidence 5678999999998766 9999999998888889999999999999999999887 8899999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC------CCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
..++++|+.|+.+|||||+++++|+|+|++++||++|.| .+..+|+||+||+||.|..|.+++++++.|
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 148 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDE 148 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGG
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccch
Confidence 999999999999999999999999999999999999999 899999999999999999999999998753
No 11
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.98 E-value=7.8e-32 Score=200.07 Aligned_cols=136 Identities=33% Similarity=0.570 Sum_probs=122.9
Q ss_pred ccccceeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH
Q psy9509 86 AELSEKLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164 (231)
Q Consensus 86 ~~~~~~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~ 164 (231)
.+++|.+..++.+. |...|.++++...++++||||++++.++.+++.|... +..+..+||++++.+|.+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHH
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHH
Confidence 46788888888877 9999999999888889999999999999999999887 788999999999999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++++|+.|+.+|||||+++++|+|+|++++||++|.|++..+|+||+||+||.|+.|.+++++++.|
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 138 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 138 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTT
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchH
Confidence 9999999999999999999999999999999999999999999999999999999999999998764
No 12
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.98 E-value=9.8e-32 Score=203.04 Aligned_cols=140 Identities=29% Similarity=0.481 Sum_probs=117.3
Q ss_pred ccCcccccceeeecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH
Q psy9509 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160 (231)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~ 160 (231)
...+.++++.+..++...|...|.+++... .+.++||||+++..++.+++.|... ++.+..+||++++.
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------g~~~~~lhg~~~~~ 83 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----------GYACTSIHGDRSQR 83 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----------TCCEEEEC------
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----------CCceEEEeCCCCHH
Confidence 346788999999999999999999999887 5789999999999999999999886 88999999999999
Q ss_pred HHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 161 ~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+|.+++++|+.|+.+|||||+++++|+|+|++++||++|.|++..+|+||+||+||.|+.|.+++|+++.|
T Consensus 84 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 154 (185)
T 2jgn_A 84 DREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 154 (185)
T ss_dssp --CHHHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGG
T ss_pred HHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.98 E-value=5.1e-32 Score=227.82 Aligned_cols=187 Identities=29% Similarity=0.402 Sum_probs=159.7
Q ss_pred ceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccc
Q psy9509 8 GLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAE 87 (231)
Q Consensus 8 ~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
+......+...++.++|+++||||+++.+..+....+.+|..+.... .......
T Consensus 186 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~ 239 (412)
T 3fht_A 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR--------------------------EEETLDT 239 (412)
T ss_dssp THHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG--------------------------GGSSCTT
T ss_pred cHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc--------------------------ccccccC
Confidence 33344456667788899999999999888888888888887766542 1223445
Q ss_pred ccceeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHH
Q psy9509 88 LSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166 (231)
Q Consensus 88 ~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~ 166 (231)
+.+.+..+.. ..|...+..++....+.++||||++++.++.+++.|... +..+..+||++++.+|..++
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHH
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhC----------CCeEEEecCCCCHHHHHHHH
Confidence 5566555544 567888888888888889999999999999999999987 78999999999999999999
Q ss_pred HHHHcCCccEEEEcCccccccCcCCCcEEEEecCC------CCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------DNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 167 ~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
++|++|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|..|.+++++++.
T Consensus 310 ~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 310 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 379 (412)
T ss_dssp HHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred HHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcCh
Confidence 99999999999999999999999999999999999 46789999999999999999999999753
No 14
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.97 E-value=3.7e-31 Score=204.08 Aligned_cols=136 Identities=28% Similarity=0.470 Sum_probs=126.5
Q ss_pred ccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
....+.+..++...|+..|.+++....++++||||+++..++.+++.|... ++.+..+||++++.+|..+
T Consensus 4 i~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 4 VTYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDLSQGERERV 73 (212)
T ss_dssp CCBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----------TCCEEEECSSSCHHHHHHH
T ss_pred cceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----------CCCEEEEECCCCHHHHHHH
Confidence 345677778888999999999999888899999999999999999999987 8899999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++|+.|+.+|||||+++++|+|+|++++||++|.|++..+|+||+||+||.|+.|.+++++++.|
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~ 139 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 139 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGG
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhH
Confidence 999999999999999999999999999999999999999999999999999999999999998754
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.97 E-value=8.7e-32 Score=224.99 Aligned_cols=185 Identities=25% Similarity=0.393 Sum_probs=156.6
Q ss_pred eeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccccc
Q psy9509 10 VIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELS 89 (231)
Q Consensus 10 ~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (231)
.....+...++.+.|++++|||+++.+..+.+..+.++..+..... ......+.
T Consensus 165 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 218 (395)
T 3pey_A 165 DQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN--------------------------EVNVDAIK 218 (395)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGG--------------------------GCSCTTEE
T ss_pred HHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccc--------------------------cccccccc
Confidence 3344456667788999999999998888888888877766554311 12234455
Q ss_pred ceeeecC-CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 90 EKLTTCS-TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 90 ~~~~~~~-~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
+.+..+. ...|...+..++....++++||||++++.++.+++.|+.. +..+..+||++++.+|.+++++
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~ 288 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE----------GHEVSILHGDLQTQERDRLIDD 288 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHH
T ss_pred EEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHH
Confidence 5555543 3557778888887778889999999999999999999987 7899999999999999999999
Q ss_pred HHcCCccEEEEcCccccccCcCCCcEEEEecCCC------CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|++|+.+|||||+++++|+|+|++++||+++.|+ +..+|+||+||+||.|+.|.+++++.+.
T Consensus 289 f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 356 (395)
T 3pey_A 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDK 356 (395)
T ss_dssp HHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSH
T ss_pred HHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEech
Confidence 9999999999999999999999999999999999 9999999999999999999999999753
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.97 E-value=5.7e-31 Score=228.06 Aligned_cols=169 Identities=18% Similarity=0.299 Sum_probs=141.5
Q ss_pred CCCcEEEEeeecCCChhh-hhc-ccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCC
Q psy9509 21 SRPQRLLFSATLSHDPEK-LHQ-LSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTN 98 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~-~~~-~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
++.|++++|||+++.+.. +.. ..+.+|..+.... ...++ .+......
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~-----------------------------~r~~l--~~~v~~~~ 221 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF-----------------------------DRPNI--RYMLMEKF 221 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC-----------------------------CCTTE--EEEEEECS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC-----------------------------CCCce--EEEEEeCC
Confidence 468999999999876554 333 2344554433210 11222 23334456
Q ss_pred ChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 99 ~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
.+...+.+++....+.++||||+|++.++.+++.|+.. ++.+..+||++++.+|.+++++|+.|+.+|||
T Consensus 222 ~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~----------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlV 291 (523)
T 1oyw_A 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----------GISAAAYHAGLENNVRADVQEKFQRDDLQIVV 291 (523)
T ss_dssp SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHC----------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEE
Confidence 78888899888888889999999999999999999987 88999999999999999999999999999999
Q ss_pred EcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 179 ~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
||+++++|||+|++++||+++.|.+.++|+||+||+||.|..|.++++++++
T Consensus 292 aT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~ 343 (523)
T 1oyw_A 292 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPA 343 (523)
T ss_dssp ECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred EechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHH
Confidence 9999999999999999999999999999999999999999999999999764
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.3e-31 Score=218.20 Aligned_cols=180 Identities=28% Similarity=0.481 Sum_probs=154.8
Q ss_pred eeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccc
Q psy9509 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSE 90 (231)
Q Consensus 11 ~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
.+..++...+.+.|++++|||++.........++.++..+... ...++.+
T Consensus 167 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~ 216 (367)
T 1hv8_A 167 DVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK------------------------------INANIEQ 216 (367)
T ss_dssp HHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC------------------------------SSSSSEE
T ss_pred HHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec------------------------------CCCCceE
Confidence 3445566677889999999999987777777776665444321 2234556
Q ss_pred eeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
.+..+....|...+.+++. ..+.++||||++++.++.+++.|+.. +..+..+||+++..+|.+++++|+
T Consensus 217 ~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f~ 285 (367)
T 1hv8_A 217 SYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDI----------GFKAGAIHGDLSQSQREKVIRLFK 285 (367)
T ss_dssp EEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECSSSCHHHHHHHHHHHH
T ss_pred EEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhc----------CCCeEEeeCCCCHHHHHHHHHHHH
Confidence 6667777888888888886 45568999999999999999999987 789999999999999999999999
Q ss_pred cCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 171 RRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+|+.+|||||+++++|+|+|++++||+++.|++..+|.||+||+||.|+.|.++++++++|
T Consensus 286 ~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~ 346 (367)
T 1hv8_A 286 QKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRRE 346 (367)
T ss_dssp TTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTS
T ss_pred cCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHH
Confidence 9999999999999999999999999999999999999999999999999999999998765
No 18
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.97 E-value=3.9e-31 Score=231.64 Aligned_cols=188 Identities=14% Similarity=0.149 Sum_probs=145.9
Q ss_pred CcceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCc
Q psy9509 6 VGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTP 85 (231)
Q Consensus 6 ~~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (231)
++..+..+.++....+++|+++||||+++.+...+...+..+..+..... ...
T Consensus 184 fr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~---------------------------~~r 236 (591)
T 2v1x_A 184 FRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS---------------------------FNR 236 (591)
T ss_dssp CCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC---------------------------CCC
T ss_pred cHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC---------------------------CCC
Confidence 44444444455555568999999999998776666555544332222100 011
Q ss_pred ccccceeeecCC--CChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH
Q psy9509 86 AELSEKLTTCST--NLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162 (231)
Q Consensus 86 ~~~~~~~~~~~~--~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r 162 (231)
.++...+..... ..+...+.+++... .+.++||||+|++.++.+++.|+.. ++.+..+||++++.+|
T Consensus 237 ~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----------g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 237 PNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----------GIHAGAYHANLEPEDK 306 (591)
T ss_dssp TTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHH
T ss_pred cccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----------CCCEEEecCCCCHHHH
Confidence 223222222111 23455666666543 6789999999999999999999987 8899999999999999
Q ss_pred HHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.+++++|+.|+.+|||||+++++|||+|++++||+++.|.+.++|+||+||+||.|..|.|++++.+.
T Consensus 307 ~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~ 374 (591)
T 2v1x_A 307 TTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFG 374 (591)
T ss_dssp HHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHH
T ss_pred HHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999764
No 19
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.97 E-value=4.3e-30 Score=224.71 Aligned_cols=184 Identities=23% Similarity=0.359 Sum_probs=146.6
Q ss_pred CCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCC
Q psy9509 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTN 98 (231)
Q Consensus 19 ~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
.+.++|+++||||+|+.+..++..++.++..+......... ......+.+.+......
T Consensus 261 ~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~ 318 (563)
T 3i5x_A 261 SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE----------------------PEAHERIDQSVVISEKF 318 (563)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS----------------------CSSCTTEEEEEEEESST
T ss_pred CccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCC----------------------ccccccCceEEEECchh
Confidence 34578999999999988999999999888766554222111 12233344444444332
Q ss_pred -ChHH----HHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 99 -LKPL----VLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 99 -~k~~----~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
.+.. .+...+.. ..+.++||||+|+..++.+++.|.+..+ .++.+..+||++++.+|..++++|+.|
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-------~~~~v~~~h~~~~~~~R~~~~~~f~~g 391 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKD 391 (563)
T ss_dssp THHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHC
T ss_pred HhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------CCceEEEecCCCCHHHHHHHHHHHhcC
Confidence 2222 22333333 3577999999999999999999987532 267899999999999999999999999
Q ss_pred CccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 173 KIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 173 ~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|..|.+++++.+.|
T Consensus 392 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 450 (563)
T 3i5x_A 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 450 (563)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred CCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999999999998764
No 20
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.97 E-value=4.1e-30 Score=225.59 Aligned_cols=183 Identities=23% Similarity=0.356 Sum_probs=146.5
Q ss_pred CCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCC-
Q psy9509 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTN- 98 (231)
Q Consensus 20 ~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 98 (231)
+.++|+++||||+++.+..++..++.+|..+......... ......+.+.+......
T Consensus 211 ~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~----------------------~~~~~~i~~~~~~~~~~~ 268 (579)
T 3sqw_A 211 ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE----------------------PEAHERIDQSVVISEKFA 268 (579)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS----------------------CSSCTTEEEEEEEESSTT
T ss_pred ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccc----------------------cccccccceEEEEecchh
Confidence 4478999999999988999999999888766554221111 12233444444444432
Q ss_pred ChH----HHHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 99 LKP----LVLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 99 ~k~----~~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
.+. ..+...+.. ..+.++||||+|+..++.+++.|++..+ .+..+..+||++++.+|.+++++|+.|+
T Consensus 269 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-------~~~~v~~~hg~~~~~~R~~~~~~F~~g~ 341 (579)
T 3sqw_A 269 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-------KDLPILEFHGKITQNKRTSLVKRFKKDE 341 (579)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------TTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------CCCcEEEecCCCCHHHHHHHHHHhhcCC
Confidence 222 223333333 3567999999999999999999987632 2678999999999999999999999999
Q ss_pred ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 174 IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 174 ~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
.+|||||+++++|+|+|++++||+++.|.+..+|+||+||+||.|..|.+++++.+.|
T Consensus 342 ~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e 399 (579)
T 3sqw_A 342 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDE 399 (579)
T ss_dssp SEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGG
T ss_pred CeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccH
Confidence 9999999999999999999999999999999999999999999999999999998764
No 21
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.97 E-value=2.7e-30 Score=208.38 Aligned_cols=135 Identities=27% Similarity=0.470 Sum_probs=123.9
Q ss_pred cccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHH
Q psy9509 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~ 166 (231)
++.+.+..++...|+..|.++++...++++||||++++.++.+++.|... ++.+..+||++++.+|..++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSCCCTHHHHHHH
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHH
Confidence 35678888999999999999999888899999999999999999999887 88999999999999999999
Q ss_pred HHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 167 ~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+.|+.|+.+|||||+++++|+|+|++++||++|.|++..+|+||+||+||.|+.|.|++|+++.|
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e 136 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRE 136 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSST
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764
No 22
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.97 E-value=8.9e-33 Score=237.38 Aligned_cols=188 Identities=30% Similarity=0.412 Sum_probs=37.6
Q ss_pred cceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcc
Q psy9509 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86 (231)
Q Consensus 7 ~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (231)
++......+...++.++|+++||||++..+..++..++.+|..+..... .....
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--------------------------~~~~~ 305 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE--------------------------EETLD 305 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc--------------------------ccCcC
Confidence 4444555677778889999999999998888999988888877765421 12344
Q ss_pred cccceeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHH
Q psy9509 87 ELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165 (231)
Q Consensus 87 ~~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~ 165 (231)
.+.+.+..+.. ..|...+..++......++||||+++..++.+++.|... +..+..+||++++.+|..+
T Consensus 306 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~----------~~~v~~lh~~~~~~~R~~~ 375 (479)
T 3fmp_B 306 TIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE----------GHQVALLSGEMMVEQRAAV 375 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC----------CccEEEecCCCCHHHHHHH
Confidence 55666655544 567888888887777789999999999999999999887 7889999999999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCC------CHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD------NIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~------~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
++.|+.|+.+|||||+++++|+|+|++++||++|.|. +..+|+||+||+||.|..|.+++|+++.
T Consensus 376 ~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 376 IERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 9999999999999999999999999999999999995 5689999999999999999999999864
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=4.9e-32 Score=226.71 Aligned_cols=185 Identities=30% Similarity=0.489 Sum_probs=33.5
Q ss_pred eeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccc
Q psy9509 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSE 90 (231)
Q Consensus 11 ~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
.+..++..+++.+|++++|||+++.+......++.+|..+...... ..+..+.+
T Consensus 182 ~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~ 235 (394)
T 1fuu_A 182 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDE--------------------------LTLEGIKQ 235 (394)
T ss_dssp HHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------------
T ss_pred HHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcc--------------------------ccCCCceE
Confidence 3445566677889999999999988888888888888766543111 12234444
Q ss_pred eeeecCCC-ChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 91 KLTTCSTN-LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 91 ~~~~~~~~-~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.+..+... .|...+..++......++||||++++.++.+++.|+.. +..+..+||+++..+|.+++++|
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----------~~~~~~~~~~~~~~~r~~~~~~f 305 (394)
T 1fuu_A 236 FYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQQERDTIMKEF 305 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHc----------CCeEEEeeCCCCHHHHHHHHHHH
Confidence 44444433 37777888887777789999999999999999999876 78899999999999999999999
Q ss_pred HcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 170 ~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++|+.+|||||+++++|+|+|++++||+++.|++..+|+||+||+||.|+.|.++++++++|
T Consensus 306 ~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~ 367 (394)
T 1fuu_A 306 RSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 367 (394)
T ss_dssp --------------------------------------------------------------
T ss_pred HCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhH
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 24
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.93 E-value=1.1e-31 Score=200.19 Aligned_cols=136 Identities=29% Similarity=0.548 Sum_probs=127.3
Q ss_pred ccccceeeecCC-CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHH
Q psy9509 86 AELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164 (231)
Q Consensus 86 ~~~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~ 164 (231)
.++++.+..++. +.|...|.++++...+.++||||+++..++.+++.|+.. +..+..+||++++.+|.+
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA----------GINNCYLEGEMVQGKRNE 71 (170)
Confidence 357788888887 889999999998877789999999999999999999886 788999999999999999
Q ss_pred HHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 165 ~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
++++|+.|+.+|||||+++++|+|+|++++||++|.|++..+|+||+||+||.|+.|.+++++++.|
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~ 138 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138 (170)
Confidence 9999999999999999999999999999999999999999999999999999999999999988654
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-30 Score=225.06 Aligned_cols=187 Identities=28% Similarity=0.361 Sum_probs=133.7
Q ss_pred ceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccc
Q psy9509 8 GLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAE 87 (231)
Q Consensus 8 ~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
+......+...++.+.|++++|||+++.+..+...++.++..+..... ......
T Consensus 277 ~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~--------------------------~~~~~~ 330 (508)
T 3fho_A 277 LGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE--------------------------ELSVEG 330 (508)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCC--------------------------C----C
T ss_pred cHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccc--------------------------cCCccc
Confidence 334444566667788999999999998899988888888766554311 112334
Q ss_pred ccceeeec-CCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHH
Q psy9509 88 LSEKLTTC-STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166 (231)
Q Consensus 88 ~~~~~~~~-~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~ 166 (231)
+.+.+..+ ....|...+..++....++++||||++++.++.++..|.+. +..+..+||+++..+|..++
T Consensus 331 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~----------~~~v~~~hg~~~~~~R~~il 400 (508)
T 3fho_A 331 IKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD----------GHTVACLTGNLEGAQRDAIM 400 (508)
T ss_dssp CCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT----------TCCCCEEC-----CTTGGGT
T ss_pred ceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC----------CCcEEEEeCCCCHHHHHHHH
Confidence 44555444 34557778888887777889999999999999999999886 78899999999999999999
Q ss_pred HHHHcCCccEEEEcCccccccCcCCCcEEEEecCC------CCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------DNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 167 ~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p------~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+.|++|+.+|||||+++++|+|+|++++||+++.| .+..+|+||+||+||.|..|.+++++.+.
T Consensus 401 ~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 401 DSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp HHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred HHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 99999999999999999999999999999999999 78999999999999999999999999854
No 26
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=8.8e-29 Score=202.70 Aligned_cols=172 Identities=30% Similarity=0.496 Sum_probs=141.4
Q ss_pred eeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccce
Q psy9509 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEK 91 (231)
Q Consensus 12 ~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
+..++...+...|++++|||+|+........++.++..+... ....++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~ 200 (337)
T 2z0m_A 150 IKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC-----------------------------IGLANVEHK 200 (337)
T ss_dssp HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS-----------------------------GGGGGEEEE
T ss_pred HHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc-----------------------------cccCCceEE
Confidence 334556677789999999999988888777777766554321 123344555
Q ss_pred eeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+..+....+. ....+....++++||||++++.++.+++.|. .+..+||+++..+|.+++++|++
T Consensus 201 ~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~--------------~~~~~~~~~~~~~r~~~~~~f~~ 264 (337)
T 2z0m_A 201 FVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFD--------------NAIELRGDLPQSVRNRNIDAFRE 264 (337)
T ss_dssp EEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT--------------TEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh--------------hhhhhcCCCCHHHHHHHHHHHHc
Confidence 5555544433 3356666778899999999999999888764 36789999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
|+.+|||||+++++|+|+|++++||+++.|++..+|+||+||+||.|+.|.+++|+.
T Consensus 265 ~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 265 GEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp TSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred CCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999987
No 27
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.94 E-value=1.9e-27 Score=200.65 Aligned_cols=124 Identities=24% Similarity=0.423 Sum_probs=107.2
Q ss_pred cccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEE-EEcCCCCHHHHH
Q psy9509 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA-EVYSDLKFDQRN 163 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~h~~~~~~~r~ 163 (231)
+.++.+.+..+ .|...+.+++... +.++||||+++..++.+++.|+.. ++.+. .+||. +|.
T Consensus 228 ~~~i~~~~~~~---~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~h~~----~r~ 289 (414)
T 3oiy_A 228 ARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSEF----EKN 289 (414)
T ss_dssp CCSEEEEEESS---CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHT----------TCCEEESSSCH----HHH
T ss_pred cccchheeecc---CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHc----------CCceehhhcCc----chH
Confidence 44555555544 5677788888774 478999999999999999999987 78887 88884 333
Q ss_pred HHHHHHHcCCccEEEE----cCccccccCcCC-CcEEEEecCC--CCHHHHHHHhcccccCC----CCceEEEEee
Q psy9509 164 KIIQEFRRRKIDLVVA----SDNLARGIDVEN-IDVVINYEAP--DNIKKYIHRIGRTARGG----RQGTSVTLVT 228 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~----T~~~~~Gidi~~-v~~vi~~~~p--~~~~~~~qr~GR~gR~g----~~g~~~~~~~ 228 (231)
+++|+.|+.+|||| |+++++|+|+|+ +++||++|.| .+..+|+||+||+||.| ..|.+++++.
T Consensus 290 --~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 290 --FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp --HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred --HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 99999999999999 999999999999 9999999999 99999999999999987 4799999883
No 28
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.4e-26 Score=212.03 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccccc-----------------------------CCCCcccEE
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK-----------------------------GAGTKMNIA 151 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~-----------------------------~~~~~~~~~ 151 (231)
+..+...+......++||||+++..|+.++..|......... ......++.
T Consensus 429 l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~ 508 (1108)
T 3l9o_A 429 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 508 (1108)
T ss_dssp HHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCee
Confidence 334455555556779999999999999999998763110000 000012389
Q ss_pred EEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCC--------CCHHHHHHHhcccccCC--CCc
Q psy9509 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP--------DNIKKYIHRIGRTARGG--RQG 221 (231)
Q Consensus 152 ~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p--------~~~~~~~qr~GR~gR~g--~~g 221 (231)
.+||+|++.+|..+++.|+.|.++|||||+++++|||+|++++||+++.| .+..+|+||+||+||.| ..|
T Consensus 509 ~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G 588 (1108)
T 3l9o_A 509 IHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRG 588 (1108)
T ss_dssp EECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSE
T ss_pred eecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCce
Confidence 99999999999999999999999999999999999999999999976653 37778999999999999 689
Q ss_pred eEEEEeecC
Q psy9509 222 TSVTLVTTH 230 (231)
Q Consensus 222 ~~~~~~~~~ 230 (231)
.+++++.+.
T Consensus 589 ~~ill~~~~ 597 (1108)
T 3l9o_A 589 IVIMMIDEK 597 (1108)
T ss_dssp EEEEEECCC
T ss_pred EEEEEecCC
Confidence 999888764
No 29
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=2.7e-26 Score=194.92 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=86.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
++++||||++++.++.+++.|++. +..+..+|| .+|.+++++|++|+.+|||||+++++|+|+| +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-c
Confidence 568999999999999999999987 788999999 3688999999999999999999999999999 9
Q ss_pred cEEEE-------------------ecCCCCHHHHHHHhcccccC-CCCceEEEEe
Q psy9509 193 DVVIN-------------------YEAPDNIKKYIHRIGRTARG-GRQGTSVTLV 227 (231)
Q Consensus 193 ~~vi~-------------------~~~p~~~~~~~qr~GR~gR~-g~~g~~~~~~ 227 (231)
++||+ ++.|.+.++|+||+||+||. |..|.|++|+
T Consensus 242 ~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 242 ERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp SEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99986 88999999999999999997 6899999997
No 30
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-25 Score=204.12 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=108.6
Q ss_pred ChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc-c----------------cCC------------CCccc
Q psy9509 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA-T----------------KGA------------GTKMN 149 (231)
Q Consensus 99 ~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~-~----------------~~~------------~~~~~ 149 (231)
..+..+...+......++||||+++..|+.++..|....-.. . ... ....+
T Consensus 329 ~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 408 (1010)
T 2xgj_A 329 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 408 (1010)
T ss_dssp CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCC
Confidence 344556666666666799999999999999999997631000 0 000 00234
Q ss_pred EEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ecC----CCCHHHHHHHhcccccCCC--
Q psy9509 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YEA----PDNIKKYIHRIGRTARGGR-- 219 (231)
Q Consensus 150 ~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~~----p~~~~~~~qr~GR~gR~g~-- 219 (231)
+..+||++++.+|..+++.|+.|.++|||||+++++|||+|++++||+ ||. |.++.+|+||+||+||.|.
T Consensus 409 I~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~ 488 (1010)
T 2xgj_A 409 IGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDD 488 (1010)
T ss_dssp EEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCS
T ss_pred eeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCC
Confidence 899999999999999999999999999999999999999999999999 998 8999999999999999996
Q ss_pred CceEEEEeecC
Q psy9509 220 QGTSVTLVTTH 230 (231)
Q Consensus 220 ~g~~~~~~~~~ 230 (231)
.|.+++++++.
T Consensus 489 ~G~vi~l~~~~ 499 (1010)
T 2xgj_A 489 RGIVIMMIDEK 499 (1010)
T ss_dssp SEEEEEEECSC
T ss_pred ceEEEEEECCC
Confidence 59999998754
No 31
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=2.3e-25 Score=195.78 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=93.7
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
++++||||+|++.++.+++.|++. +..+..+||. +|.+++++|++|+.+|||||+++++|+|+| +
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v 419 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-A 419 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-C
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-c
Confidence 568999999999999999999987 7889999984 688899999999999999999999999998 8
Q ss_pred cEE--------------------EEecCCCCHHHHHHHhcccccCCC-CceEEEEee
Q psy9509 193 DVV--------------------INYEAPDNIKKYIHRIGRTARGGR-QGTSVTLVT 228 (231)
Q Consensus 193 ~~v--------------------i~~~~p~~~~~~~qr~GR~gR~g~-~g~~~~~~~ 228 (231)
++| ++++.|.+.++|+||+||+||.|. .|.+++|++
T Consensus 420 ~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred eEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 888 778889999999999999999965 899999997
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=2.2e-24 Score=184.08 Aligned_cols=124 Identities=24% Similarity=0.358 Sum_probs=112.7
Q ss_pred CCCChHHHHHHHHHh----cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcC--------CCCHHHHH
Q psy9509 96 STNLKPLVLYQLIRK----HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYS--------DLKFDQRN 163 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~----~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~--------~~~~~~r~ 163 (231)
....|...|.+++.. ..+.++||||+++..++.+++.|+.. ++.+..+|| +++..+|.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----------~~~~~~~~g~~~~~~~~~~~~~~r~ 409 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----------GIKAKRFVGQASKENDRGLSQREQK 409 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----------TCCEEEECCSSCC-------CCHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----------CCCcEEEeccccccccccCCHHHHH
Confidence 445688888888877 46789999999999999999999987 788999999 99999999
Q ss_pred HHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 164 ~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
+++++|+.|..+|||||+++++|+|+|++++||++|.|+++..|.||+||+||.|+ |.++.++++.
T Consensus 410 ~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 410 LILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp HHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred HHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999998 9999999875
No 33
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.92 E-value=3e-25 Score=206.67 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=137.3
Q ss_pred eccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCccccccee
Q psy9509 13 WDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKL 92 (231)
Q Consensus 13 ~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (231)
..++..++.++|+++||||++++........+.++..+... .. ....+...+
T Consensus 742 ~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~---~~-------------------------~r~~i~~~~ 793 (1151)
T 2eyq_A 742 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP---PA-------------------------RRLAVKTFV 793 (1151)
T ss_dssp HHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC---CC-------------------------BCBCEEEEE
T ss_pred HHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC---CC-------------------------CccccEEEE
Confidence 34455556789999999998877776666665544332211 00 011122222
Q ss_pred eecCCCChHHHHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 93 TTCSTNLKPLVLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 93 ~~~~~~~k~~~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
.. ..+......++... .+++++|||++++.++.+++.|++..+ +..+..+||+|++.+|.+++++|++
T Consensus 794 ~~---~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p--------~~~v~~lhg~~~~~eR~~il~~F~~ 862 (1151)
T 2eyq_A 794 RE---YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP--------EARIAIGHGQMRERELERVMNDFHH 862 (1151)
T ss_dssp EE---CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT--------TSCEEECCSSCCHHHHHHHHHHHHT
T ss_pred ec---CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC--------CCeEEEEeCCCCHHHHHHHHHHHHc
Confidence 22 12223333344333 578999999999999999999988744 6789999999999999999999999
Q ss_pred CCccEEEEcCccccccCcCCCcEEEEecC-CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 172 RKIDLVVASDNLARGIDVENIDVVINYEA-PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 172 ~~~~vlv~T~~~~~Gidi~~v~~vi~~~~-p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|+.+|||||+++++|+|+|++++||+++. +++..+|+||+||+||.|+.|.|++++.+.
T Consensus 863 g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 863 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp TSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999999999999988 579999999999999999999999998753
No 34
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=3.6e-25 Score=188.68 Aligned_cols=102 Identities=16% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
.+++||||++++.++.+++.|++. ++.+..+||++. .+++++|++|+.+|||||+++++|+|+|+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----------g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~- 252 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----------GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA- 252 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----------CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-
Confidence 458999999999999999999887 788999999764 57899999999999999999999999999
Q ss_pred cEEEEec--------------------CCCCHHHHHHHhcccccCCC-CceEEEEeec
Q psy9509 193 DVVINYE--------------------APDNIKKYIHRIGRTARGGR-QGTSVTLVTT 229 (231)
Q Consensus 193 ~~vi~~~--------------------~p~~~~~~~qr~GR~gR~g~-~g~~~~~~~~ 229 (231)
++||++| .|.+..+|+||+||+||.|. .|.+++|+..
T Consensus 253 ~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 253 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 9999998 99999999999999999997 7888887643
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.92 E-value=1.2e-24 Score=195.15 Aligned_cols=129 Identities=25% Similarity=0.304 Sum_probs=101.3
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc-cc------------C--C-----------CCcccEEEE
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA-TK------------G--A-----------GTKMNIAEV 153 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~-~~------------~--~-----------~~~~~~~~~ 153 (231)
+...+.+.+. .++++||||++++.++.+++.|.+..... .. . . .....+..+
T Consensus 241 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~ 318 (715)
T 2va8_A 241 IIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYH 318 (715)
T ss_dssp HHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEE
Confidence 4444444443 56799999999999999999998652210 00 0 0 001358999
Q ss_pred cCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec-------CCCCHHHHHHHhcccccCC--CC
Q psy9509 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE-------APDNIKKYIHRIGRTARGG--RQ 220 (231)
Q Consensus 154 h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~-------~p~~~~~~~qr~GR~gR~g--~~ 220 (231)
||+++..+|..+++.|+.|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..
T Consensus 319 h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~ 398 (715)
T 2va8_A 319 HAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQI 398 (715)
T ss_dssp CTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSC
T ss_pred CCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999 88 8999999999999999988 47
Q ss_pred ceEEEEeecC
Q psy9509 221 GTSVTLVTTH 230 (231)
Q Consensus 221 g~~~~~~~~~ 230 (231)
|.|++++++.
T Consensus 399 G~~~~l~~~~ 408 (715)
T 2va8_A 399 GESIVVVRDK 408 (715)
T ss_dssp EEEEEECSCG
T ss_pred ceEEEEeCCc
Confidence 9999998754
No 36
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=3e-26 Score=206.01 Aligned_cols=177 Identities=17% Similarity=0.191 Sum_probs=130.8
Q ss_pred CCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCCh
Q psy9509 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLK 100 (231)
Q Consensus 21 ~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 100 (231)
++.|+++||||++ .+.+.+++...| .+.+... ...+...+.......+
T Consensus 239 ~~~~iIl~SAT~~--~~~l~~~~~~~~-vi~v~gr-----------------------------~~pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 239 PDLKIIIMSATLD--AEKFQRYFNDAP-LLAVPGR-----------------------------TYPVELYYTPEFQRDY 286 (773)
T ss_dssp TTCEEEEEESCSC--CHHHHHHTTSCC-EEECCCC-----------------------------CCCEEEECCSSCCSCH
T ss_pred CCceEEEEecccc--HHHHHHHhcCCC-cccccCc-----------------------------ccceEEEEecCCchhH
Confidence 5789999999995 455555543333 3332100 1123333433344444
Q ss_pred HH----HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccc-ccCCCCcccEEEEcCCCCHHHHHHHHHHHH-----
Q psy9509 101 PL----VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA-TKGAGTKMNIAEVYSDLKFDQRNKIIQEFR----- 170 (231)
Q Consensus 101 ~~----~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~----- 170 (231)
.. .+.+++....++++||||+++++++.+++.|.+..... ......++.+..+||++++.+|.++++.|+
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 33 33333344467899999999999999999998621100 000112678999999999999999999999
Q ss_pred cCCccEEEEcCccccccCcCCCcEEEEecC------------------CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 171 RRKIDLVVASDNLARGIDVENIDVVINYEA------------------PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 171 ~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
.|..+|||||+++++|||+|++++||++|. |.|..+|.||+||+||. ..|.|+.+++++
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 89999999999999998 789999998753
No 37
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=4e-25 Score=196.01 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=114.9
Q ss_pred eeeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
.+.++....|..+|...+... .+.++||||+|++.++.+++.|... ++.+..+||++.+.+|..+.++
T Consensus 408 d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~----------gi~~~vLhg~~~~rEr~ii~~a 477 (844)
T 1tf5_A 408 DLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK----------GIPHQVLNAKNHEREAQIIEEA 477 (844)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT----------TCCCEEECSSCHHHHHHHHTTT
T ss_pred cEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEeeCCccHHHHHHHHHc
Confidence 355667778999999888653 5678999999999999999999987 8999999999988888766666
Q ss_pred HHcCCccEEEEcCccccccCcC--------CCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 169 FRRRKIDLVVASDNLARGIDVE--------NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
|+.| .|+|||++++||+|++ ++.+||+++.|.+...|.||+||+||.|..|.++.|++++|
T Consensus 478 g~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 478 GQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp TSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 6655 6999999999999999 78899999999999999999999999999999999999875
No 38
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.92 E-value=2.1e-24 Score=193.68 Aligned_cols=132 Identities=26% Similarity=0.337 Sum_probs=107.1
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhcccccc------------CC-----------CCcccEEEEc
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK------------GA-----------GTKMNIAEVY 154 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~------------~~-----------~~~~~~~~~h 154 (231)
..+...+.+.+. .++++||||++++.++.++..|.+....... .. .....+..+|
T Consensus 224 ~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 224 SSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp SSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred hHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 345555665554 4578999999999999999999864221000 00 0013589999
Q ss_pred CCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec----CCCCHHHHHHHhcccccCC--CCceEE
Q psy9509 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE----APDNIKKYIHRIGRTARGG--RQGTSV 224 (231)
Q Consensus 155 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~----~p~~~~~~~qr~GR~gR~g--~~g~~~ 224 (231)
|++++.+|..+++.|+.|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|+
T Consensus 302 ~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 381 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEE
Confidence 9999999999999999999999999999999999999999998 66 5899999999999999988 478999
Q ss_pred EEeecCC
Q psy9509 225 TLVTTHE 231 (231)
Q Consensus 225 ~~~~~~~ 231 (231)
+++++.+
T Consensus 382 ~l~~~~~ 388 (720)
T 2zj8_A 382 IVSTSDD 388 (720)
T ss_dssp EECSSSC
T ss_pred EEecCcc
Confidence 9987653
No 39
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=2.2e-25 Score=190.37 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=93.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENI 192 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v 192 (231)
++++||||++++.++.+++.|+.. +..+..+||. +|.+++++|+.|+.+|||||+++++|+|+|+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~- 254 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA- 254 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-
Confidence 568999999999999999999987 8899999995 6788999999999999999999999999999
Q ss_pred cEEEE--------------------ecCCCCHHHHHHHhcccccCCC-CceEEEEeecC
Q psy9509 193 DVVIN--------------------YEAPDNIKKYIHRIGRTARGGR-QGTSVTLVTTH 230 (231)
Q Consensus 193 ~~vi~--------------------~~~p~~~~~~~qr~GR~gR~g~-~g~~~~~~~~~ 230 (231)
++||+ ++.|.+..+|+||+||+||.|. .|.+++|+.+.
T Consensus 255 ~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 255 SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999 6699999999999999999997 89999999864
No 40
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.92 E-value=1.3e-24 Score=189.40 Aligned_cols=168 Identities=14% Similarity=0.142 Sum_probs=132.8
Q ss_pred cEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCChHHH
Q psy9509 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLV 103 (231)
Q Consensus 24 q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 103 (231)
.+..||+|+..+...+.+.+. ..++.+ |... +....-.+...+.....|..+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~--l~vv~I---Ptnk-----------------------p~~R~d~~d~vy~t~~eK~~a 462 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG--MEVVVI---PTHK-----------------------PMIRKDHDDLVFRTQKEKYEK 462 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC--CCEEEC---CCSS-----------------------CCCCEECCCEEESSHHHHHHH
T ss_pred HHeEECCCCchHHHHHHHHhC--CeEEEE---CCCC-----------------------CcceeecCcEEEecHHHHHHH
Confidence 699999999877777776663 222222 1111 001111223556677789999
Q ss_pred HHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 104 LYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 104 l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+...+... .+.++||||+|++.++.+++.|.+. ++.+..+||+..+.++..+.++++.| .|+|||+
T Consensus 463 l~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~----------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATd 530 (822)
T 3jux_A 463 IVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKK----------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATN 530 (822)
T ss_dssp HHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTT----------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEET
T ss_pred HHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHC----------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcc
Confidence 99988763 5779999999999999999999987 89999999996666665556666555 6999999
Q ss_pred ccccccCcC--------CCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 182 NLARGIDVE--------NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 182 ~~~~Gidi~--------~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++||+|++ +..+||+++.|.+...|.||+||+||.|..|.++.|++.+|
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 999999998 66799999999999999999999999999999999999875
No 41
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.92 E-value=3.9e-24 Score=189.57 Aligned_cols=121 Identities=24% Similarity=0.311 Sum_probs=109.5
Q ss_pred ChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 99 LKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 99 ~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
.+...+...+... .+.++||||+|+..++.+++.|.+. ++.+..+||++++.+|.+++++|+.|+++|
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~V 498 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI----------GIKVNYLHSEIKTLERIEIIRDLRLGKYDV 498 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHHTSCSE
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc----------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEE
Confidence 4455555555443 5679999999999999999999987 888999999999999999999999999999
Q ss_pred EEEcCccccccCcCCCcEEEEecC-----CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 177 VVASDNLARGIDVENIDVVINYEA-----PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 177 lv~T~~~~~Gidi~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
||||+++++|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|+++.
T Consensus 499 LVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~ 556 (661)
T 2d7d_A 499 LVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKI 556 (661)
T ss_dssp EEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSC
T ss_pred EEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCC
Confidence 999999999999999999999997 99999999999999998 789999999875
No 42
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.92 E-value=3.2e-24 Score=192.02 Aligned_cols=129 Identities=25% Similarity=0.369 Sum_probs=105.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCC--------------------CCcccEEEEcCCCCH
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA--------------------GTKMNIAEVYSDLKF 159 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~--------------------~~~~~~~~~h~~~~~ 159 (231)
+...+.+.+. .++++||||++++.++.++..|.+......... ..+..+..+||++++
T Consensus 231 ~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 231 FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 4455555543 567899999999999999999976422100000 001358889999999
Q ss_pred HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec---CCCCHHHHHHHhcccccCC--CCceEEEEeecC
Q psy9509 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE---APDNIKKYIHRIGRTARGG--RQGTSVTLVTTH 230 (231)
Q Consensus 160 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~---~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 230 (231)
.+|..+++.|+.|.++|||||+++++|+|+|++++||+ || .|.+..+|.||+||+||.| ..|.|++++++.
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~ 388 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 388 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999999999999998 66 7899999999999999988 479999998764
No 43
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=8.3e-24 Score=187.55 Aligned_cols=122 Identities=23% Similarity=0.284 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
..+...+...+... .+.++||||+|+..++.+++.|.+. ++.+..+||++++.+|.+++++|+.|+++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~ 491 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----------GIRARYLHHELDAFKRQALIRDLRLGHYD 491 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----------TCCEEEECTTCCHHHHHHHHHHHHTTSCS
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----------CCCceeecCCCCHHHHHHHHHHhhcCCce
Confidence 34555555555433 5779999999999999999999987 88899999999999999999999999999
Q ss_pred EEEEcCccccccCcCCCcEEEEecC-----CCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 176 LVVASDNLARGIDVENIDVVINYEA-----PDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 176 vlv~T~~~~~Gidi~~v~~vi~~~~-----p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
|||||+++++|+|+|++++||+++. |.+..+|+||+||+||.+ .|.+++++++.
T Consensus 492 VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~ 550 (664)
T 1c4o_A 492 CLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRV 550 (664)
T ss_dssp EEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSC
T ss_pred EEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCC
Confidence 9999999999999999999999997 999999999999999985 89999998764
No 44
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.91 E-value=5.7e-25 Score=194.65 Aligned_cols=101 Identities=15% Similarity=0.203 Sum_probs=94.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.++++||||++++.++.+++.|++. ++.+..+||. +|.+++++|++|+.+|||||+++++|+|+|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----------g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip- 473 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----------GKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG- 473 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----------TCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----------CCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-
Confidence 4678999999999999999999987 7899999994 789999999999999999999999999999
Q ss_pred CcEEEE--------------------ecCCCCHHHHHHHhcccccC-CCCceEEEEe
Q psy9509 192 IDVVIN--------------------YEAPDNIKKYIHRIGRTARG-GRQGTSVTLV 227 (231)
Q Consensus 192 v~~vi~--------------------~~~p~~~~~~~qr~GR~gR~-g~~g~~~~~~ 227 (231)
+++||+ ++.|.+.++|+||+||+||. |..|.+++|+
T Consensus 474 v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 474 ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 999998 56899999999999999999 7899999996
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.91 E-value=1.6e-25 Score=200.30 Aligned_cols=125 Identities=20% Similarity=0.283 Sum_probs=77.1
Q ss_pred CCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE--------cCCCCHHHHHH
Q psy9509 97 TNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV--------YSDLKFDQRNK 164 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------h~~~~~~~r~~ 164 (231)
...|...|.+++... .+.++||||+++..++.+++.|+.... ...+.+..+ ||++++.+|.+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~------~~~~~~~~l~G~~~~~~h~~~~~~eR~~ 451 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK------LSFLKPGILTGRGKTNQNTGMTLPAQKC 451 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT------CCSCCEEC--------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC------ccccceeEEEccCCCccccCCCHHHHHH
Confidence 456888888888765 567999999999999999999987510 001556666 66999999999
Q ss_pred HHHHHHc-CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 165 IIQEFRR-RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 165 ~~~~f~~-~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
++++|+. |+.+|||||+++++|||+|++++||+||.|++..+|+||+|| ||. ..|.+++++++
T Consensus 452 v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~ 515 (696)
T 2ykg_A 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSN 515 (696)
T ss_dssp ---------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESC
T ss_pred HHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecC
Confidence 9999998 999999999999999999999999999999999999999999 998 78999888875
No 46
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.91 E-value=6.3e-24 Score=195.34 Aligned_cols=134 Identities=19% Similarity=0.213 Sum_probs=106.5
Q ss_pred ecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccc-----------------c------------CC
Q psy9509 94 TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT-----------------K------------GA 144 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~-----------------~------------~~ 144 (231)
.+....+...+...+......++||||++++.|+.++..|....-... . ..
T Consensus 317 ~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~ 396 (997)
T 4a4z_A 317 DGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRS 396 (997)
T ss_dssp CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHH
Confidence 344566788888888888878999999999999999999976310000 0 00
Q ss_pred CCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCC---------CHHHHHHHhcccc
Q psy9509 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD---------NIKKYIHRIGRTA 215 (231)
Q Consensus 145 ~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~---------~~~~~~qr~GR~g 215 (231)
....++..+||++++.+|..+++.|+.|.++|||||+++++|||+|++ .||+.+.|. +..+|+||+||+|
T Consensus 397 ~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~-~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 397 LLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTR-TVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp HHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCS-EEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred HhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCc-eEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 002268999999999999999999999999999999999999999995 455544444 9999999999999
Q ss_pred cCC--CCceEEEEee
Q psy9509 216 RGG--RQGTSVTLVT 228 (231)
Q Consensus 216 R~g--~~g~~~~~~~ 228 (231)
|.| ..|.+++++.
T Consensus 476 R~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 476 RRGLDSTGTVIVMAY 490 (997)
T ss_dssp CTTTCSSEEEEEECC
T ss_pred cCCCCcceEEEEecC
Confidence 998 5677877763
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.91 E-value=7.6e-25 Score=203.02 Aligned_cols=99 Identities=21% Similarity=0.406 Sum_probs=85.7
Q ss_pred CcccccceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEE-EEcCCCCHHHH
Q psy9509 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA-EVYSDLKFDQR 162 (231)
Q Consensus 84 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~h~~~~~~~r 162 (231)
.+.++.+.+..+ .|...|.+++.... .++||||++++.++.++..|+.. ++.+. .+|| +|
T Consensus 284 ~~~~i~~~~~~~---~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~----------g~~~~~~lhg-----~r 344 (1104)
T 4ddu_A 284 VARNITHVRISS---RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRF----------KFNVGETWSE-----FE 344 (1104)
T ss_dssp CCCCEEEEEESC---CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHT----------TCCEEESSSS-----HH
T ss_pred CcCCceeEEEec---CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhC----------CCCeeeEecC-----cH
Confidence 355666666655 57777888887744 78999999999999999999987 78888 8999 25
Q ss_pred HHHHHHHHcCCccEEEE----cCccccccCcCC-CcEEEEecCCC
Q psy9509 163 NKIIQEFRRRKIDLVVA----SDNLARGIDVEN-IDVVINYEAPD 202 (231)
Q Consensus 163 ~~~~~~f~~~~~~vlv~----T~~~~~Gidi~~-v~~vi~~~~p~ 202 (231)
.+ +++|++|+.+|||| |+++++|+|+|+ |++||++|.|.
T Consensus 345 r~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 345 KN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 55 99999999999999 999999999999 99999999998
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=8.2e-25 Score=196.02 Aligned_cols=123 Identities=16% Similarity=0.311 Sum_probs=101.9
Q ss_pred ChHHHHHHHHHhc--CCCcEEEEEcchH--------HHHHHHHHHhh-hccccccCCCCcccEEEEcCCCCHHHHHHHHH
Q psy9509 99 LKPLVLYQLIRKH--AMQGVLCFVNTAQ--------GAHRLARLLHH-IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167 (231)
Q Consensus 99 ~k~~~l~~ll~~~--~~~~~iIF~~s~~--------~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~ 167 (231)
.+...+...+... .+.+++|||++.+ .++.+++.|.+ .++ +..+..+||+|++.+|.++++
T Consensus 562 ~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~--------~~~v~~lHG~m~~~eR~~v~~ 633 (780)
T 1gm5_A 562 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFP--------EFKLGLMHGRLSQEEKDRVML 633 (780)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC-----------CBCCCCSSSCCSCSHHHHH
T ss_pred chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcC--------CCcEEEEeCCCCHHHHHHHHH
Confidence 3444455555433 5678999999764 46777777766 322 678999999999999999999
Q ss_pred HHHcCCccEEEEcCccccccCcCCCcEEEEecCCC-CHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 168 EFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD-NIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 168 ~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~-~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
+|++|+.+|||||+++++|+|+|++++||+++.|. +.+.|+||+||+||.|..|.|++++++
T Consensus 634 ~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 634 EFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp HHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred HHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999999999999999999999999996 789999999999999999999999874
No 49
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.91 E-value=3.8e-24 Score=181.32 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=91.1
Q ss_pred HHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccc
Q psy9509 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG 186 (231)
Q Consensus 107 ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~G 186 (231)
.+... ++++||||++++.++.+++.|++. +..+..+||+ +|.+++++|++|+.+|||||+++++|
T Consensus 166 ~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~----------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~G 230 (431)
T 2v6i_A 166 WITEF-DGRTVWFVHSIKQGAEIGTCLQKA----------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMG 230 (431)
T ss_dssp HHHSC-SSCEEEECSSHHHHHHHHHHHHHT----------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTS
T ss_pred HHHcC-CCCEEEEeCCHHHHHHHHHHHHHc----------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcC
Confidence 34443 568999999999999999999987 7889999997 57889999999999999999999999
Q ss_pred cCcCCCcE-----------------EEEecCCCCHHHHHHHhcccccCCC-CceEEEEe
Q psy9509 187 IDVENIDV-----------------VINYEAPDNIKKYIHRIGRTARGGR-QGTSVTLV 227 (231)
Q Consensus 187 idi~~v~~-----------------vi~~~~p~~~~~~~qr~GR~gR~g~-~g~~~~~~ 227 (231)
+|+| +.+ ||+++.|.+..+|+||+||+||.|. .+.++++.
T Consensus 231 iDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 231 ANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp CCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred cccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 9999 554 6788999999999999999999985 45555554
No 50
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=9.3e-24 Score=186.95 Aligned_cols=168 Identities=13% Similarity=0.096 Sum_probs=136.5
Q ss_pred cEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCChHHH
Q psy9509 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLV 103 (231)
Q Consensus 24 q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 103 (231)
.+..||+|...+...+.+.+- ..++.+ |.+. +....-...++++....|..+
T Consensus 378 kl~GmTGTa~te~~ef~~iY~--l~vv~I---Ptn~-----------------------p~~R~d~~d~v~~~~~~K~~a 429 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYK--LDTVVV---PTNR-----------------------PMIRKDLPDLVYMTEAEKIQA 429 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHC--CEEEEC---CCSS-----------------------CCCCEECCCEEESSHHHHHHH
T ss_pred hhhcCCCCchhHHHHHHHHhC--CcEEEc---CCCC-----------------------CceeecCCcEEEeCHHHHHHH
Confidence 577899999877777777653 222221 1111 011111234556777889999
Q ss_pred HHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 104 LYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 104 l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+...+... .+.++||||+|++.++.+++.|.+. ++.+..+||+..+.++..+.++|+.| .|+|||+
T Consensus 430 l~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~----------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATn 497 (853)
T 2fsf_A 430 IIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA----------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATN 497 (853)
T ss_dssp HHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT----------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEES
T ss_pred HHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC----------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecc
Confidence 99988653 5678999999999999999999998 89999999999988888888999888 5999999
Q ss_pred ccccccCcCCC-------------------------------------cEEEEecCCCCHHHHHHHhcccccCCCCceEE
Q psy9509 182 NLARGIDVENI-------------------------------------DVVINYEAPDNIKKYIHRIGRTARGGRQGTSV 224 (231)
Q Consensus 182 ~~~~Gidi~~v-------------------------------------~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~ 224 (231)
+++||+|++.. .+||+++.|.|...|.||+||+||.|..|.++
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999874 59999999999999999999999999999999
Q ss_pred EEeecCC
Q psy9509 225 TLVTTHE 231 (231)
Q Consensus 225 ~~~~~~~ 231 (231)
.|++.+|
T Consensus 578 ~fls~eD 584 (853)
T 2fsf_A 578 FYLSMED 584 (853)
T ss_dssp EEEETTS
T ss_pred EEecccH
Confidence 9999775
No 51
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.90 E-value=2.9e-24 Score=198.89 Aligned_cols=135 Identities=16% Similarity=0.162 Sum_probs=99.2
Q ss_pred CCCCcEEEEeeecCCChhhhhcccccCCeEEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeeecCCCC
Q psy9509 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNL 99 (231)
Q Consensus 20 ~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (231)
+..+|++++|||++.. ..+...++.++..+.+. .......++.+.+. ...
T Consensus 213 ~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~--------------------------~~~~~~~~i~~~~~---~~~ 262 (1054)
T 1gku_B 213 VGEARGCLMVSTATAK-KGKKAELFRQLLNFDIG--------------------------SSRITVRNVEDVAV---NDE 262 (1054)
T ss_dssp EECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCS--------------------------CCEECCCCEEEEEE---SCC
T ss_pred ccCCceEEEEecCCCc-hhHHHHHhhcceEEEcc--------------------------CcccCcCCceEEEe---chh
Confidence 5678999999999987 65555555444332221 01122344555544 356
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEE
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVA 179 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~ 179 (231)
|...|..+++.. +.++||||++++.|+.+++.|+.. +.+..+||++ .+++++|+.|+.+||||
T Consensus 263 k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-----------~~v~~lhg~~-----~~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 263 SISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-----------FRIGIVTATK-----KGDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp CTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-----------SCEEECTTSS-----SHHHHHHHHTSCSEEEE
T ss_pred HHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-----------cCeeEEeccH-----HHHHHHHHcCCCcEEEE
Confidence 677777877765 468999999999999999998753 5788999998 47889999999999999
Q ss_pred ----cCccccccCcCCC-cEEEEecCC
Q psy9509 180 ----SDNLARGIDVENI-DVVINYEAP 201 (231)
Q Consensus 180 ----T~~~~~Gidi~~v-~~vi~~~~p 201 (231)
|+++++|+|+|+| ++||++|.|
T Consensus 326 Tas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 326 TAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp ECC------CCSCCTTTCCEEEEESCC
T ss_pred ecCCCCeeEeccccCCcccEEEEeCCC
Confidence 9999999999996 999999999
No 52
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.90 E-value=7e-24 Score=185.89 Aligned_cols=100 Identities=29% Similarity=0.398 Sum_probs=90.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
.++++||||++++.++.+++.|++. ++.+..+||++++.+ |+.+..+|||||+++++|||+|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId- 456 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD- 456 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-
Confidence 6789999999999999999999987 889999999999875 4556679999999999999997
Q ss_pred CcEEE----------Eec-----------CCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 192 IDVVI----------NYE-----------APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 192 v~~vi----------~~~-----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++|| ||| .|.+.++|+||+||+|| |..|. +.|++++|
T Consensus 457 V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e 515 (666)
T 3o8b_A 457 FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGE 515 (666)
T ss_dssp BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCC
T ss_pred CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecch
Confidence 99988 566 89999999999999999 89999 99988765
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.89 E-value=2.6e-23 Score=178.12 Aligned_cols=116 Identities=22% Similarity=0.408 Sum_probs=104.1
Q ss_pred cCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
+....|...|.+++....+.++||||++++.++.+++.|. +..+||+++..+|.+++++|++|+.
T Consensus 331 ~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---------------~~~~~g~~~~~~R~~~~~~F~~g~~ 395 (472)
T 2fwr_A 331 FNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---------------IPAITHRTSREEREEILEGFRTGRF 395 (472)
T ss_dssp HSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---------------CCBCCSSSCSHHHHTHHHHHHHSSC
T ss_pred hcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---------------cceeeCCCCHHHHHHHHHHHhCCCC
Confidence 4456788999999988888899999999999999998773 3368999999999999999999999
Q ss_pred cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCC-ceEEE
Q psy9509 175 DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ-GTSVT 225 (231)
Q Consensus 175 ~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~-g~~~~ 225 (231)
+|||||+++++|+|+|++++||+++.|+++..|.||+||+||.|+. +.+++
T Consensus 396 ~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i 447 (472)
T 2fwr_A 396 RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVL 447 (472)
T ss_dssp SBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEE
T ss_pred CEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEE
Confidence 9999999999999999999999999999999999999999999854 34443
No 54
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.89 E-value=1.4e-23 Score=181.50 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=102.2
Q ss_pred CChHHHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..|...+.+++... .+.++|||++ .+.++.+++.|.+. +..+..+||+++..+|.+++++|++|+.
T Consensus 330 ~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~----------~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 330 SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE----------YDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT----------CSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 34556666666554 4445566666 88899999999876 5689999999999999999999999999
Q ss_pred cEEEEc-CccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEee
Q psy9509 175 DLVVAS-DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 175 ~vlv~T-~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
+||||| +++++|+|+|++++||+++.|++...|.||+||+||.|..+.++++++
T Consensus 399 ~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 399 IIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999 999999999999999999999999999999999999998774444443
No 55
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.89 E-value=7.8e-23 Score=181.51 Aligned_cols=129 Identities=18% Similarity=0.159 Sum_probs=115.6
Q ss_pred eeeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHH
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQE 168 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~ 168 (231)
.++++....|..++...+... .+.++||||+|++.++.+++.|.+. ++.+..+||+..+.++..+.++
T Consensus 436 d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~----------Gi~~~vLnak~~~rEa~iia~a 505 (922)
T 1nkt_A 436 DLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR----------RIPHNVLNAKYHEQEATIIAVA 505 (922)
T ss_dssp CEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT----------TCCCEEECSSCHHHHHHHHHTT
T ss_pred cEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHC----------CCCEEEecCChhHHHHHHHHhc
Confidence 355667778999999888653 5678999999999999999999998 8999999999988888888888
Q ss_pred HHcCCccEEEEcCccccccCcCCC----------------------------------------------------cEEE
Q psy9509 169 FRRRKIDLVVASDNLARGIDVENI----------------------------------------------------DVVI 196 (231)
Q Consensus 169 f~~~~~~vlv~T~~~~~Gidi~~v----------------------------------------------------~~vi 196 (231)
|+.| .|+|||++++||+|++.+ .+||
T Consensus 506 gr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI 583 (922)
T 1nkt_A 506 GRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL 583 (922)
T ss_dssp TSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE
T ss_pred CCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE
Confidence 8877 599999999999999975 4999
Q ss_pred EecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 197 ~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+++.|.|...|.||+||+||.|..|.+..|++.+|
T Consensus 584 ~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 584 GTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp ECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred eccCCCCHHHHHHHhcccccCCCCeeEEEEechhH
Confidence 99999999999999999999999999999999775
No 56
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.88 E-value=1.8e-22 Score=193.37 Aligned_cols=188 Identities=18% Similarity=0.174 Sum_probs=130.7
Q ss_pred cccCCCCCCcEEEEeeecCCChhhhhcccccCCe-EEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceee
Q psy9509 15 TFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK-LFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLT 93 (231)
Q Consensus 15 i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
+....+.++|+|+||||++ +.+++++|...++. .+..... .-|..++.++.
T Consensus 1076 i~~~~~~~~riI~lSATl~-N~~dla~WL~~~~~~~~~~~~~---------------------------~RPvpL~~~i~ 1127 (1724)
T 4f92_B 1076 ISSQIERPIRIVALSSSLS-NAKDVAHWLGCSATSTFNFHPN---------------------------VRPVPLELHIQ 1127 (1724)
T ss_dssp HHHTTSSCCEEEEEESCBT-THHHHHHHHTCCSTTEEECCGG---------------------------GCSSCEEEEEE
T ss_pred HHhhcCCCceEEEEeCCCC-CHHHHHHHhCCCCCCeEEeCCC---------------------------CCCCCeEEEEE
Confidence 3345677899999999998 67888887644332 2221110 01122222222
Q ss_pred ecCCCCh-------HHHHHHHHHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCC---------------------
Q psy9509 94 TCSTNLK-------PLVLYQLIRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGA--------------------- 144 (231)
Q Consensus 94 ~~~~~~k-------~~~l~~ll~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~--------------------- 144 (231)
....... ...+...+.. ..++++||||+|+..|+.++..|...........
T Consensus 1128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~ 1207 (1724)
T 4f92_B 1128 GFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDST 1207 (1724)
T ss_dssp EECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHH
T ss_pred eccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHH
Confidence 1111111 1122333333 3677999999999999999988755422111000
Q ss_pred ---CCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----e------cCCCCHHHHHHHh
Q psy9509 145 ---GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----Y------EAPDNIKKYIHRI 211 (231)
Q Consensus 145 ---~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~------~~p~~~~~~~qr~ 211 (231)
....++..+||++++.+|..+++.|++|.++|||||+++++|+|+|...+||. | ..|-+..+|.||+
T Consensus 1208 L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~ 1287 (1724)
T 4f92_B 1208 LKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMV 1287 (1724)
T ss_dssp HHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHH
T ss_pred HHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhh
Confidence 01246899999999999999999999999999999999999999999999883 2 2367899999999
Q ss_pred cccccCCC--CceEEEEeecC
Q psy9509 212 GRTARGGR--QGTSVTLVTTH 230 (231)
Q Consensus 212 GR~gR~g~--~g~~~~~~~~~ 230 (231)
|||||.|. .|.+++++.+.
T Consensus 1288 GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1288 GHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp TTBCCTTTCSCEEEEEEEEGG
T ss_pred ccccCCCCCCceEEEEEecch
Confidence 99999986 79999988754
No 57
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.88 E-value=1.1e-22 Score=162.05 Aligned_cols=125 Identities=15% Similarity=0.223 Sum_probs=97.9
Q ss_pred cCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 95 CSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
.....|+..|.+++... .+.++||||++...++.+...|.... ++.+..+||++++.+|.+++++|+.+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---------g~~~~~l~G~~~~~~R~~~i~~F~~~ 162 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNN 162 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---------CSCCCEECTTSCHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---------CCcEEEEECCCCHHHHHHHHHHhcCC
Confidence 34577999999999876 77899999999999999999998631 67788999999999999999999998
Q ss_pred -Ccc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceE--EEEee
Q psy9509 173 -KID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS--VTLVT 228 (231)
Q Consensus 173 -~~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~ 228 (231)
..+ +|++|+++++|+|++.+++||+||.||++..|.||+||++|.|+.+.+ +.++.
T Consensus 163 ~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~ 222 (271)
T 1z5z_A 163 PSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 222 (271)
T ss_dssp TTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEE
T ss_pred CCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEee
Confidence 677 789999999999999999999999999999999999999999987655 44444
No 58
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.88 E-value=2.9e-23 Score=180.74 Aligned_cols=132 Identities=17% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCChHHHHHHHHHh----cCCCcEEEEEcchHHHHHHHHHHhhhcccc--ccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRK----HAMQGVLCFVNTAQGAHRLARLLHHIDNVA--TKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~l~~ll~~----~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|...|.+++.. ..+.++||||+++..++.+++.|+...... ......+.....+||++++.+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 36688888888865 467899999999999999999997641100 001112445567788999999999999999
Q ss_pred c-CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 171 R-RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 171 ~-~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
. |..+|||||+++++|+|+|++++||+||.|+++..|+||+|| ||. ..|.+++++++.
T Consensus 450 ~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 508 (556)
T 4a2p_A 450 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKT 508 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCH
T ss_pred ccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCc
Confidence 9 999999999999999999999999999999999999999999 998 789999998753
No 59
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.88 E-value=6.1e-23 Score=196.54 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=130.4
Q ss_pred cCCCCCCcEEEEeeecCCChhhhhcccccCCe--EEeeeccCCCCCCCCCCCcccccCCCCCcccccccCcccccceeee
Q psy9509 17 LTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK--LFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTT 94 (231)
Q Consensus 17 ~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (231)
...+++.|+|++|||+| +.+++++|...++. ..... +. .-|..+.+.+..
T Consensus 239 ~~~~~~~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~--------------------------~~-~RPvpL~~~~~~ 290 (1724)
T 4f92_B 239 EMTQEDVRLIGLSATLP-NYEDVATFLRVDPAKGLFYFD--------------------------NS-FRPVPLEQTYVG 290 (1724)
T ss_dssp HHHTCCCEEEEEECSCT-THHHHHHHTTCCHHHHEEECC--------------------------GG-GCSSCEEEECCE
T ss_pred HhCCCCCcEEEEecccC-CHHHHHHHhCCCCCCCeEEEC--------------------------CC-CccCccEEEEec
Confidence 34567899999999998 78888887644332 11111 00 012223333333
Q ss_pred cCCCCh---HH----HHHHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccC-----------------------
Q psy9509 95 CSTNLK---PL----VLYQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKG----------------------- 143 (231)
Q Consensus 95 ~~~~~k---~~----~l~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~----------------------- 143 (231)
...... .. .+...+.+. .++++||||+|++.|+.+++.|.+........
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (1724)
T 4f92_B 291 ITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKN 370 (1724)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCST
T ss_pred cCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhccccc
Confidence 222221 11 222223332 56789999999999999999887642110000
Q ss_pred ----CCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEE----ec------CCCCHHHHHH
Q psy9509 144 ----AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN----YE------APDNIKKYIH 209 (231)
Q Consensus 144 ----~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~----~~------~p~~~~~~~q 209 (231)
.....+++.+||+|++.+|..+++.|++|.++|||||+++++|||+|..++||. |+ .|-+..+|.|
T Consensus 371 ~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Q 450 (1724)
T 4f92_B 371 LELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQ 450 (1724)
T ss_dssp HHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHH
T ss_pred HHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHH
Confidence 001246899999999999999999999999999999999999999999999985 43 3568999999
Q ss_pred HhcccccCC--CCceEEEEeecCC
Q psy9509 210 RIGRTARGG--RQGTSVTLVTTHE 231 (231)
Q Consensus 210 r~GR~gR~g--~~g~~~~~~~~~~ 231 (231)
|+|||||.| ..|.++++..+.|
T Consensus 451 m~GRAGR~g~d~~G~~ii~~~~~~ 474 (1724)
T 4f92_B 451 MLGRAGRPQYDTKGEGILITSHGE 474 (1724)
T ss_dssp HHTTBSCTTTCSCEEEEEEEESTT
T ss_pred hhhhccCCCCCCccEEEEEecchh
Confidence 999999987 4799999887654
No 60
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.87 E-value=1.6e-22 Score=183.27 Aligned_cols=131 Identities=18% Similarity=0.276 Sum_probs=74.4
Q ss_pred CCChHHHHHHHHHh----cCCCcEEEEEcchHHHHHHHHHHhhhcccc--ccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRK----HAMQGVLCFVNTAQGAHRLARLLHHIDNVA--TKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~l~~ll~~----~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|...|.++|.. ..+.++||||+++..++.++..|+...... ......+.....+||++++.+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 35688888888875 466899999999999999999997631000 000112455667799999999999999999
Q ss_pred c-CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 171 R-RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 171 ~-~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
. |..+|||||+++++|||+|++++||+||.|+++..|+||+|| ||. ..|.+++++++
T Consensus 691 ~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~ 748 (797)
T 4a2q_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSK 748 (797)
T ss_dssp ---CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECC
T ss_pred ccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeC
Confidence 9 999999999999999999999999999999999999999999 998 88999999875
No 61
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.87 E-value=8.7e-23 Score=177.55 Aligned_cols=132 Identities=21% Similarity=0.331 Sum_probs=88.8
Q ss_pred CCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhcccc--ccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVA--TKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|...|.+++... .+.++||||+++..++.++..|....... ......+.....+||++++.+|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 356888888888653 56899999999999999999998751000 000111345556678999999999999999
Q ss_pred c-CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecC
Q psy9509 171 R-RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230 (231)
Q Consensus 171 ~-~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~ 230 (231)
. |+.+|||||+++++|+|+|++++||+||.|+++..|+||+|| ||. ..|.+++++++.
T Consensus 449 ~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~ 507 (555)
T 3tbk_A 449 ASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSA 507 (555)
T ss_dssp ---CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCH
T ss_pred cCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCC
Confidence 9 999999999999999999999999999999999999999999 998 899999998764
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=6.6e-22 Score=181.96 Aligned_cols=125 Identities=18% Similarity=0.203 Sum_probs=115.0
Q ss_pred ecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 94 TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 94 ~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
++....|...|.+++....+.++||||+++..++.++..|... .++.+..+||++++.+|.+++++|++|+
T Consensus 484 ~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~---------~g~~~~~lhG~~~~~~R~~~l~~F~~g~ 554 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER---------EGIRAAVFHEGMSIIERDRAAAWFAEED 554 (968)
T ss_dssp TTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT---------TCCCEEEECTTSCTTHHHHHHHHHHSTT
T ss_pred ccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH---------cCCcEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 4556679999999998888889999999999999999999853 1788999999999999999999999998
Q ss_pred --ccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEe
Q psy9509 174 --IDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227 (231)
Q Consensus 174 --~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 227 (231)
.+|||||+++++|+|+|++++||++|.|+++..|.||+||+||.|+.+.++++.
T Consensus 555 ~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~ 610 (968)
T 3dmq_A 555 TGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHV 610 (968)
T ss_dssp SSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEE
T ss_pred CcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEE
Confidence 999999999999999999999999999999999999999999999988766664
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.86 E-value=5e-22 Score=175.58 Aligned_cols=103 Identities=18% Similarity=0.292 Sum_probs=94.7
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc--CCccEEEEcCccccccCcCC
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR--RKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~~ 191 (231)
...+|||+++++++.+++.|++. +..+..+||++++.+|.++++.|+. |..+|||||+++++|+|+ +
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-C
Confidence 34689999999999999999986 7899999999999999999999999 889999999999999999 8
Q ss_pred CcEEEEecC--------------CCCHHHHHHHhcccccCCCC---ceEEEEe
Q psy9509 192 IDVVINYEA--------------PDNIKKYIHRIGRTARGGRQ---GTSVTLV 227 (231)
Q Consensus 192 v~~vi~~~~--------------p~~~~~~~qr~GR~gR~g~~---g~~~~~~ 227 (231)
+++||+++. |.+..+|+||+||+||.|.. |.|+.+.
T Consensus 390 v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 390 IRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp BSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred ccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 999999999 88999999999999999954 6666654
No 64
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.86 E-value=1.7e-21 Score=174.33 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHhc----C-CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCC--------CCHHHHHHH
Q psy9509 99 LKPLVLYQLIRKH----A-MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD--------LKFDQRNKI 165 (231)
Q Consensus 99 ~k~~~l~~ll~~~----~-~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~--------~~~~~r~~~ 165 (231)
.|...|.+++... . +.++||||+++..++.+++.|+.... ....++.+..+||+ |++.+|.++
T Consensus 381 ~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~----l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~ 456 (699)
T 4gl2_A 381 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEK----FAEVGVKAHHLIGAGHSSEFKPMTQNEQKEV 456 (699)
T ss_dssp -CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCS----CC-----CEECCCSCCCTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCcc----ccccCcceEEEECCCCccCCCCCCHHHHHHH
Confidence 4555555555442 3 78999999999999999999986410 01126789999999 999999999
Q ss_pred HHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCC
Q psy9509 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218 (231)
Q Consensus 166 ~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g 218 (231)
+++|+.|+.+|||||+++++|||+|++++||+||.|+++.+|+||+||+||.|
T Consensus 457 ~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 457 ISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE 509 (699)
T ss_dssp HHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS
T ss_pred HHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999987654
No 65
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.85 E-value=1.6e-21 Score=178.97 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhcccc--ccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLVLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVA--TKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|...|.++|... .+.++||||+++..++.+++.|+...... ......|.....+||++++.+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 356888899988763 56899999999999999999998741100 000111445667799999999999999999
Q ss_pred c-CCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEEEeec
Q psy9509 171 R-RKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229 (231)
Q Consensus 171 ~-~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~ 229 (231)
. |.++|||||+++++|||+|++++||+||.|+++.+|+||+|| ||. ..|.++++++.
T Consensus 691 ~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~ 748 (936)
T 4a2w_A 691 TSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSK 748 (936)
T ss_dssp ---CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESC
T ss_pred ccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeC
Confidence 9 999999999999999999999999999999999999999999 998 78889888865
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=1.4e-19 Score=159.14 Aligned_cols=111 Identities=14% Similarity=0.264 Sum_probs=90.4
Q ss_pred HHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc---EEEEcC
Q psy9509 106 QLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID---LVVASD 181 (231)
Q Consensus 106 ~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~---vlv~T~ 181 (231)
+++... ...++||||++++.|+.+++.|.+..+.... .....+..+||.+++ +|.+++++|++|+.+ ||+||+
T Consensus 431 ~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~--~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~ 507 (590)
T 3h1t_A 431 DFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR--KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQ 507 (590)
T ss_dssp HHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT--TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESS
T ss_pred HHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc--cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECC
Confidence 334433 4579999999999999999999876221000 012237788998764 799999999998766 889999
Q ss_pred ccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCC
Q psy9509 182 NLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 182 ~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
++++|+|+|++++||+++.|++...|+||+||+||.+.
T Consensus 508 ~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 508 LLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 99999999999999999999999999999999999874
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=2.7e-19 Score=154.25 Aligned_cols=121 Identities=15% Similarity=0.220 Sum_probs=103.2
Q ss_pred CCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC-
Q psy9509 96 STNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR- 172 (231)
Q Consensus 96 ~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~- 172 (231)
....|...+.+++... .+.++||||+++..++.+++.|.... +..+..+||+++..+|.+++++|+.+
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~---------~~~~~~~~g~~~~~~R~~~~~~F~~~~ 392 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---------NTEVPFLYGELSKKERDDIISKFQNNP 392 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH---------TCCCCEEETTSCHHHHHHHHHHHHHCT
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh---------CCCeEEEECCCCHHHHHHHHHHhcCCC
Confidence 3466888888888765 67899999999999999999998641 67788999999999999999999998
Q ss_pred Ccc-EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 173 KID-LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 173 ~~~-vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
..+ +|++|+++++|+|+|.+++||++|.||++..|.||+||++|.|+.+.+.+
T Consensus 393 ~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v 446 (500)
T 1z63_A 393 SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIV 446 (500)
T ss_dssp TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEE
T ss_pred CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEE
Confidence 555 78999999999999999999999999999999999999999998766543
No 68
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.78 E-value=2.9e-18 Score=151.90 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..|...+..++... .+.++|||++.+..++.+...|... ++.+..+||+++..+|.+++++|+.+..
T Consensus 398 s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~----------g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 467 (644)
T 1z3i_X 398 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR----------RYLYVRLDGTMSIKKRAKIVERFNNPSS 467 (644)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH----------TCCEEEECSSCCHHHHHHHHHHHHSTTC
T ss_pred ChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC----------CCCEEEEeCCCCHHHHHHHHHHhcCCCC
Confidence 45666676666543 5789999999999999999999887 8899999999999999999999999876
Q ss_pred c---EEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 175 D---LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 175 ~---vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
. +|++|++++.|+|++.+++||++|.||++..+.|++||++|.|+...+.+
T Consensus 468 ~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v 521 (644)
T 1z3i_X 468 PEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYI 521 (644)
T ss_dssp CCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEE
T ss_pred CcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEE
Confidence 4 88999999999999999999999999999999999999999998765444
No 69
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.4e-18 Score=154.19 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=107.9
Q ss_pred CCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 97 TNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
...|...|.+++... .+.++||||.....++.+...|... ++.+..+||+++..+|.+++++|+.+..
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~----------g~~~~~i~G~~~~~eR~~~i~~F~~~~~ 623 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK----------GINFQRLDGTVPSAQRRISIDHFNSPDS 623 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHH----------TCCCEEESTTSCHHHHHHHHHTTSSTTC
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhC----------CCCEEEEeCCCCHHHHHHHHHHhhCCCC
Confidence 466888899988775 5679999999999999999999887 8899999999999999999999998654
Q ss_pred ---cEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCCceEEE
Q psy9509 175 ---DLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225 (231)
Q Consensus 175 ---~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~ 225 (231)
.+|++|.+++.|+|++.+++||++|.||++..+.|++||++|.|+...+.+
T Consensus 624 ~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 677 (800)
T 3mwy_W 624 NDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMV 677 (800)
T ss_dssp SCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEE
T ss_pred CceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEE
Confidence 489999999999999999999999999999999999999999998655544
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.44 E-value=1.1e-12 Score=120.96 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=87.1
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhcccc--ccCCCCcccEE-EEcCC----------C----------CH----------
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVA--TKGAGTKMNIA-EVYSD----------L----------KF---------- 159 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~-~~h~~----------~----------~~---------- 159 (231)
+.++||||+|+..|..+++.|.+..+.. ..+...+..+. .+|++ + ++
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 4589999999999999999998763100 00001124443 44432 1 22
Q ss_pred -------------------HHHHHHHHHHHcCCccEEEEcCccccccCcCCCcEEEEecCCCCHHHHHHHhcccccCCCC
Q psy9509 160 -------------------DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220 (231)
Q Consensus 160 -------------------~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~~ 220 (231)
.+|..++++|++|+++|||+|+++.+|+|+|.+ +++.+|.|.+...|+|++||++|.+..
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 678999999999999999999998753
Q ss_pred ----ceEEEEee
Q psy9509 221 ----GTSVTLVT 228 (231)
Q Consensus 221 ----g~~~~~~~ 228 (231)
|.++.|+.
T Consensus 696 ~K~~G~IVdf~~ 707 (1038)
T 2w00_A 696 TKTFGNIVTFRD 707 (1038)
T ss_dssp TCCSEEEEESSC
T ss_pred CCCcEEEEEccc
Confidence 66665543
No 71
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.12 E-value=3.5e-10 Score=101.19 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=98.3
Q ss_pred eeecCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhh--ccc----------------------------
Q psy9509 92 LTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHI--DNV---------------------------- 139 (231)
Q Consensus 92 ~~~~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~--~~~---------------------------- 139 (231)
.++.....|+.++.+-+... .+.|+||+|.|.+.++.+++.|... +.+
T Consensus 420 ~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (997)
T 2ipc_A 420 VVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLL 499 (997)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHT
T ss_pred eEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhh
Confidence 44555677888887766543 6789999999999999999999820 000
Q ss_pred -------------cc--c-CC--------------------CCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc
Q psy9509 140 -------------AT--K-GA--------------------GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL 183 (231)
Q Consensus 140 -------------~~--~-~~--------------------~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 183 (231)
.. . +. ..++.+.++.+.....|...+-++-+.| .|.|||+++
T Consensus 500 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~G--aVTIATNMA 577 (997)
T 2ipc_A 500 ERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRSK--TVTIATNMA 577 (997)
T ss_dssp SSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTSTT--CEEEECSST
T ss_pred hccccccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCCC--eEEEEeccc
Confidence 00 0 00 1255666676665444433333333333 489999999
Q ss_pred ccccCcCCC-------------------c---------------------------------------------------
Q psy9509 184 ARGIDVENI-------------------D--------------------------------------------------- 193 (231)
Q Consensus 184 ~~Gidi~~v-------------------~--------------------------------------------------- 193 (231)
+||.||--- .
T Consensus 578 GRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e 657 (997)
T 2ipc_A 578 GRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRA 657 (997)
T ss_dssp TTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHh
Confidence 999998422 1
Q ss_pred ----EEEEecCCCCHHHHHHHhcccccCCCCceEEEEeecCC
Q psy9509 194 ----VVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231 (231)
Q Consensus 194 ----~vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~ 231 (231)
+||-...+.|..---|-.||+||.|..|.+-.|++-+|
T Consensus 658 ~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 658 LGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp TCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred cCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78988899999999999999999999999999988654
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.00 E-value=1.2e-09 Score=94.82 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE--Ec
Q psy9509 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV--AS 180 (231)
Q Consensus 103 ~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv--~T 180 (231)
.+.+++.. .+++++||++|....+.+++.|... . ...++.. ..+.+++++|+.+. .||+ +|
T Consensus 375 ~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~------------~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~ 437 (540)
T 2vl7_A 375 LLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI------------P-VIEENKK--TRHEEVLELMKTGK-YLVMLVMR 437 (540)
T ss_dssp HHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS------------C-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-
T ss_pred HHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC------------c-eEecCCC--CcHHHHHHHHhcCC-eEEEEEec
Confidence 34444433 5568999999999999998877532 2 3445554 36788999999865 5776 88
Q ss_pred CccccccCcCC----CcEEEEecCCCCH------------------------------HHHHHHhcccccCCCCceEEEE
Q psy9509 181 DNLARGIDVEN----IDVVINYEAPDNI------------------------------KKYIHRIGRTARGGRQGTSVTL 226 (231)
Q Consensus 181 ~~~~~Gidi~~----v~~vi~~~~p~~~------------------------------~~~~qr~GR~gR~g~~g~~~~~ 226 (231)
..+++|||+|+ +++||+++.|... ..+.|.+||+-|..+..-++++
T Consensus 438 ~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 438 AKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp --------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred CceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99999999997 7889999998421 3456899999997544334444
Q ss_pred ee
Q psy9509 227 VT 228 (231)
Q Consensus 227 ~~ 228 (231)
++
T Consensus 518 lD 519 (540)
T 2vl7_A 518 CD 519 (540)
T ss_dssp ES
T ss_pred Ec
Confidence 44
No 73
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.62 E-value=4.2e-07 Score=80.08 Aligned_cols=103 Identities=17% Similarity=0.304 Sum_probs=68.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC--ccccccCc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD--NLARGIDV 189 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~--~~~~Gidi 189 (231)
.+++++||++|....+.+++.|+.. +.. ...+++..++..++++|+ +.-.||+++. .+.+|||+
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~----------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~ 512 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFE----------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINF 512 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSC----------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC------
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhc----------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccC
Confidence 3457999999999999988877621 112 444556678999999999 8788999975 99999999
Q ss_pred CC--CcEEEEecCCCC-----------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 190 EN--IDVVINYEAPDN-----------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 190 ~~--v~~vi~~~~p~~-----------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
|+ ..+||..+.|.. .....|.+||+=|..+..-++++++
T Consensus 513 ~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 513 PGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp --CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred CCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 85 568999888742 1123589999999765544555544
No 74
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.35 E-value=1.2e-05 Score=69.88 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc--CccccccCc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS--DNLARGIDV 189 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T--~~~~~Gidi 189 (231)
.++.++||++|....+.+++. . +..+..-..+++ +.+.++.|+...--||+|| ..+.+|||+
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~---~----------~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~ 455 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR---I----------SLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIEL 455 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT---C----------CSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCC
T ss_pred CCCCEEEEecCHHHHHHHHHh---c----------CCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccc
Confidence 456899999999998888862 1 333333223444 3556777754444799998 699999999
Q ss_pred C-----CCcEEEEecCCCC------------------------------HHHHHHHhcccccCCCCceEEEEee
Q psy9509 190 E-----NIDVVINYEAPDN------------------------------IKKYIHRIGRTARGGRQGTSVTLVT 228 (231)
Q Consensus 190 ~-----~v~~vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~~~~ 228 (231)
| .+.+||..+.|.. ...+.|.+||+=|..+..-++++++
T Consensus 456 ~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 456 RNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp EETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred cccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEee
Confidence 9 3678998887741 1113388899988765544555544
No 75
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.30 E-value=3.6e-06 Score=67.65 Aligned_cols=119 Identities=15% Similarity=0.028 Sum_probs=85.0
Q ss_pred cCCCChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 95 CSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 95 ~~~~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
+..+.|...|.++|... .+.+++||++.....+-+..++... ++....+.|.....++. -..+
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~----------~~~y~RlDG~~~~~~~k-----~~~~ 169 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGN----------KVHIKRYDGHSIKSAAA-----ANDF 169 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTS----------SCEEEESSSCCC------------CC
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcC----------CCceEeCCCCchhhhhh-----cccC
Confidence 44778999998888765 5789999999999999999988775 78888888875433211 1245
Q ss_pred CccEEEEcCccccccC-----cCCCcEEEEecCCCCHHHH-HHHhcccccCC--C--CceEEEEee
Q psy9509 173 KIDLVVASDNLARGID-----VENIDVVINYEAPDNIKKY-IHRIGRTARGG--R--QGTSVTLVT 228 (231)
Q Consensus 173 ~~~vlv~T~~~~~Gid-----i~~v~~vi~~~~p~~~~~~-~qr~GR~gR~g--~--~g~~~~~~~ 228 (231)
...+.+.|.+++-|+| ....+.||.||..|++..= +|.+-|+.|.| + .-.++-+++
T Consensus 170 ~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt 235 (328)
T 3hgt_A 170 SCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVA 235 (328)
T ss_dssp SEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEE
T ss_pred CceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeC
Confidence 5566666888888886 6788999999999998885 89888888873 2 334454444
No 76
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.98 E-value=0.00014 Score=55.19 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=38.9
Q ss_pred cceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeee
Q psy9509 7 GGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSV 53 (231)
Q Consensus 7 ~~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~ 53 (231)
++...+..++..++.++|+++||||+|+++..+++.++.+|..+.+.
T Consensus 166 ~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 166 GFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp TCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred ChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 34444556777788899999999999999999999999999887764
No 77
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.48 E-value=0.0004 Score=53.90 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=29.0
Q ss_pred CCcEEEEeeecCCChhhhhcccccCCeEEeee
Q psy9509 22 RPQRLLFSATLSHDPEKLHQLSLFQPKLFTSV 53 (231)
Q Consensus 22 ~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~ 53 (231)
++|+++||||+|++++.+++.++.+|..+.+.
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~ 240 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCCCEEEEEC
Confidence 78999999999999999999999999887764
No 78
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.40 E-value=0.015 Score=52.45 Aligned_cols=80 Identities=19% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-cccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-LARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gidi~ 190 (231)
.+.+++|.++|+.-+.+.++.+.+.... .+..+..+||+++..++....+.+..|..+|+|+|.. +...+++.
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~------~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~ 489 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSK------FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFK 489 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTC------SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCS
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhh------cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhcc
Confidence 4678999999999999999988876321 2578999999999999999999999999999999974 34456777
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
++.+||.
T Consensus 490 ~l~lVVI 496 (780)
T 1gm5_A 490 NLGLVII 496 (780)
T ss_dssp CCCEEEE
T ss_pred CCceEEe
Confidence 8877765
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.30 E-value=0.00042 Score=52.63 Aligned_cols=46 Identities=20% Similarity=0.197 Sum_probs=36.6
Q ss_pred ceeeeeccccCCCCCCcEEEEeeecCCChhhhhcccccCCeEEeee
Q psy9509 8 GLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSV 53 (231)
Q Consensus 8 ~~~~~~~i~~~~~~~~q~il~SATl~~~~~~~~~~~~~~p~~i~~~ 53 (231)
+...+..++..++.++|+++||||+|+++..+.+.++++|..+.+.
T Consensus 172 ~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~ 217 (224)
T 1qde_A 172 FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVK 217 (224)
T ss_dssp CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 3344555666778899999999999999999999999999887654
No 80
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.71 E-value=0.036 Score=45.89 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=63.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccc----ccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA----RGI 187 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~----~Gi 187 (231)
.+.+++|.+++++-+.+.++.++.... .+..+..+||+.+..++....+.+..|..+|+|+|.-.- .-+
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~-------~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~ 135 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLAD-------EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKL 135 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCC-------SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHcc-------CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHh
Confidence 567899999999999999999988521 267899999999999999999999999999999996321 114
Q ss_pred CcCCCcEEEE
Q psy9509 188 DVENIDVVIN 197 (231)
Q Consensus 188 di~~v~~vi~ 197 (231)
+...+.+||.
T Consensus 136 ~~~~~~~iVi 145 (414)
T 3oiy_A 136 SQKRFDFVFV 145 (414)
T ss_dssp TTCCCSEEEE
T ss_pred ccccccEEEE
Confidence 4456777664
No 81
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=94.69 E-value=0.15 Score=47.98 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=69.7
Q ss_pred CCChHHHHHHH-HHh-cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 97 TNLKPLVLYQL-IRK-HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 97 ~~~k~~~l~~l-l~~-~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
...|-.+.... +.. ..+.++||.+++++-+.++++.++... ..++.+..+||+.+..++....+.+..|..
T Consensus 103 GSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-------~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~ 175 (1104)
T 4ddu_A 103 GVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-------DEKVKIFGFYSSMKKEEKEKFEKSFEEDDY 175 (1104)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-------CTTSCEEEECTTCCTTHHHHHHHHHHTSCC
T ss_pred CCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-------CCCCeEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 35565543332 222 356789999999999999999998841 126789999999999899999999999999
Q ss_pred cEEEEcCccc-c---ccCcCCCcEEEE
Q psy9509 175 DLVVASDNLA-R---GIDVENIDVVIN 197 (231)
Q Consensus 175 ~vlv~T~~~~-~---Gidi~~v~~vi~ 197 (231)
+|+|+|.-.- . -++...+.++|.
T Consensus 176 ~IlV~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 176 HILVFSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp SEEEEEHHHHHHSHHHHHTSCCSEEEE
T ss_pred CEEEECHHHHHHHHHhhcccCcCEEEE
Confidence 9999995311 1 144567777765
No 82
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.53 E-value=0.2 Score=47.33 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-ccccccCcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-NLARGIDVE 190 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~ 190 (231)
.+.+++|.++|+.-+.+.++.+.+.+. ..+..+..+++..+..++...++.+..|..+|+|+|. .+...+.+.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~------~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~ 724 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFA------NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 724 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHST------TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhh------cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCcccc
Confidence 567999999999999999999887632 1146788999999999999999999999999999995 444557777
Q ss_pred CCcEEEE
Q psy9509 191 NIDVVIN 197 (231)
Q Consensus 191 ~v~~vi~ 197 (231)
++.+||.
T Consensus 725 ~l~lvIi 731 (1151)
T 2eyq_A 725 DLGLLIV 731 (1151)
T ss_dssp SEEEEEE
T ss_pred ccceEEE
Confidence 7776654
No 83
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=92.93 E-value=0.36 Score=41.48 Aligned_cols=59 Identities=12% Similarity=0.018 Sum_probs=53.9
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+++||.+++++-+...++.|+.. +..+..++|+.+..++..+...+..|..+++++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 468999999999999999999886 78899999999999999999999999999999985
No 84
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.24 E-value=0.39 Score=41.98 Aligned_cols=60 Identities=7% Similarity=0.064 Sum_probs=53.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH--HcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF--RRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f--~~~~~~vlv~T~ 181 (231)
..+++||.+++++-++..++.|... ++.+..++|+.+..++..+...+ ..+..+|+++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~----------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQL----------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHH----------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhc----------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3568999999999999999999887 78899999999999999998888 468899999997
No 85
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.54 E-value=1.6 Score=33.32 Aligned_cols=76 Identities=11% Similarity=0.210 Sum_probs=52.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cc--
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LA-- 184 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-- 184 (231)
.+.++||.+++++-+.+.++.++..... .+..+..++|+.+.......+ .+..+|+|+|.- +.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~ 179 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSS------IGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENT 179 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGG------GTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcc------CCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcC
Confidence 4567999999999999999888765221 156788899988765543322 356789999952 11
Q ss_pred cccCcCCCcEEEE
Q psy9509 185 RGIDVENIDVVIN 197 (231)
Q Consensus 185 ~Gidi~~v~~vi~ 197 (231)
.++++..+.++|.
T Consensus 180 ~~~~l~~~~~lVi 192 (249)
T 3ber_A 180 KGFNLRALKYLVM 192 (249)
T ss_dssp TTCCCTTCCEEEE
T ss_pred CCcCccccCEEEE
Confidence 3466777777664
No 86
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=90.89 E-value=0.73 Score=34.60 Aligned_cols=91 Identities=13% Similarity=0.071 Sum_probs=59.8
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|... +..++... .+.++||.+++++-+.+.++.++..... ..+..+..++|+.+..++...+
T Consensus 71 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~----- 140 (230)
T 2oxc_A 71 GTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIK-----MEGLECHVFIGGTPLSQDKTRL----- 140 (230)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-----STTCCEEEECTTSCHHHHHHHT-----
T ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcc-----cCCceEEEEeCCCCHHHHHHhc-----
Confidence 3566544 44444432 3568999999999999999998875211 1156788899998866554332
Q ss_pred CCccEEEEcCcc------ccccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------ARGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. ...+++..+.++|.
T Consensus 141 ~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 357899999631 12355666776654
No 87
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=90.69 E-value=0.7 Score=34.91 Aligned_cols=77 Identities=12% Similarity=0.147 Sum_probs=45.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----cccc-
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLAR- 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~- 185 (231)
.+.++||.+++++.+.+.++.++.... ..+..+..++|+..... ..+.+..+..+|+|+|. .+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~ 167 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGD------YMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRR 167 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT------TTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhh------hcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhC
Confidence 456899999999999999999887521 11456777787765332 23455567789999993 2333
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+++..+.++|.
T Consensus 168 ~~~~~~~~~lVi 179 (237)
T 3bor_A 168 YLSPKWIKMFVL 179 (237)
T ss_dssp SSCSTTCCEEEE
T ss_pred CcCcccCcEEEE
Confidence 355666777654
No 88
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=90.42 E-value=1.1 Score=32.71 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=51.5
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cc-c
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LA-R 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-~ 185 (231)
.+.+++|.+++++.+.+.++.++...+ ...+..++|+.+.......+. ...+|+|+|.- +. .
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~ 138 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP--------HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQG 138 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT--------TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh--------cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcC
Confidence 356899999999999999999987632 367888899877554433322 25789999952 22 2
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+++..+.++|.
T Consensus 139 ~~~~~~~~~iVi 150 (207)
T 2gxq_A 139 VLDLSRVEVAVL 150 (207)
T ss_dssp SSCCTTCSEEEE
T ss_pred CcchhhceEEEE
Confidence 355667777664
No 89
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=90.06 E-value=3.6 Score=31.53 Aligned_cols=76 Identities=16% Similarity=0.202 Sum_probs=52.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----c--c
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----L--A 184 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~--~ 184 (231)
.+.++||.+++++-+++.++.+++... ..+..+..++|+....... +.+..+ .+|+|+|.- + .
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~---~~~~~~-~~Iiv~Tp~~l~~~~~~~ 194 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMT------HHVHTYGLIMGGSNRSAEA---QKLGNG-INIIVATPGRLLDHMQNT 194 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT------TCCSCEEEECSSSCHHHHH---HHHHHC-CSEEEECHHHHHHHHHHC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh------hcCceEEEEECCCCHHHHH---HHhcCC-CCEEEEcHHHHHHHHHcc
Confidence 456799999999999999999987632 1256678888888755443 333344 789999941 2 1
Q ss_pred cccCcCCCcEEEE
Q psy9509 185 RGIDVENIDVVIN 197 (231)
Q Consensus 185 ~Gidi~~v~~vi~ 197 (231)
.++++..+.++|.
T Consensus 195 ~~~~~~~l~~lVi 207 (262)
T 3ly5_A 195 PGFMYKNLQCLVI 207 (262)
T ss_dssp TTCCCTTCCEEEE
T ss_pred CCcccccCCEEEE
Confidence 2466777777664
No 90
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=89.84 E-value=1.3 Score=33.48 Aligned_cols=76 Identities=9% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cc-c
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LA-R 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~-~ 185 (231)
.+.++||.+++++-+.++++.++..... .+..+..++|+.+.......+. . ..+|+|+|.- +. .
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~ 170 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA------CRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECG 170 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH------TTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh------cCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcC
Confidence 3567999999999999998888775221 1567889999988766554433 2 4789999952 22 2
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+++..+.++|.
T Consensus 171 ~~~~~~~~~lVi 182 (242)
T 3fe2_A 171 KTNLRRTTYLVL 182 (242)
T ss_dssp SCCCTTCCEEEE
T ss_pred CCCcccccEEEE
Confidence 346677777664
No 91
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=89.46 E-value=4.9 Score=29.54 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=60.7
Q ss_pred CCChHH-HHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPL-VLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~-~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|.. ++..++... ...+++|.+++++-+.+.++.+++.... ..+..+..++|+.+..+.. +.+..
T Consensus 61 GsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~v~~~~g~~~~~~~~---~~~~~ 132 (220)
T 1t6n_A 61 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY-----MPNVKVAVFFGGLSIKKDE---EVLKK 132 (220)
T ss_dssp TSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT-----STTCCEEEESCCSCHHHHH---HHHHH
T ss_pred CCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhh-----CCCceEEEEeCCCChHHHH---HHHhc
Confidence 355644 333344332 2348999999999999999888775211 0156788999998865543 44556
Q ss_pred CCccEEEEcCc-----c-ccccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDN-----L-ARGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~-----~-~~Gidi~~v~~vi~ 197 (231)
+..+|+|+|.- + ...+++..+.++|.
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 77899999953 1 22356677777664
No 92
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=89.45 E-value=2.1 Score=28.13 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=36.7
Q ss_pred EEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 116 ~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
.+||.+..+-..++...++.. +.++..++++.+...|.+.++.|....+
T Consensus 5 fvvfssdpeilkeivreikrq----------gvrvvllysdqdekrrrerleefekqgv 53 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQ----------GVRVVLLYSDQDEKRRRERLEEFEKQGV 53 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHT----------TCEEEEEECCSCHHHHHHHHHHHHTTTC
T ss_pred EEEecCCHHHHHHHHHHHHhC----------CeEEEEEecCchHHHHHHHHHHHHHcCC
Confidence 356777777777777777766 8888888888888888888888865433
No 93
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=89.21 E-value=1.9 Score=32.25 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=50.1
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----ccc-
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LAR- 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~- 185 (231)
.+.+++|.+++++-+.+.++.++.... ..+..+..++|+.+.......+ +..+|+|+|.- +..
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~ 164 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGK------NHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDET 164 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT------TSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhC------CCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhc
Confidence 456899999999999999999887621 1246788899987655443322 46789999952 112
Q ss_pred -ccCcCCCcEEEE
Q psy9509 186 -GIDVENIDVVIN 197 (231)
Q Consensus 186 -Gidi~~v~~vi~ 197 (231)
.++...+.++|.
T Consensus 165 ~~~~~~~~~~lVi 177 (236)
T 2pl3_A 165 VSFHATDLQMLVL 177 (236)
T ss_dssp SSCCCTTCCEEEE
T ss_pred CCcccccccEEEE
Confidence 355566766654
No 94
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.46 E-value=1.6 Score=31.82 Aligned_cols=91 Identities=10% Similarity=0.147 Sum_probs=57.6
Q ss_pred CChHH-HHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 98 NLKPL-VLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 98 ~~k~~-~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
..|-. ++..++... .+.+++|.+++++-+++.++.+...... ..+..+..++|+.+..+.... + .+
T Consensus 51 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~---~-~~ 121 (206)
T 1vec_A 51 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKH-----MGGAKVMATTGGTNLRDDIMR---L-DD 121 (206)
T ss_dssp STTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTT-----SSSCCEEEECSSSCHHHHHHH---T-TS
T ss_pred CchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhh-----cCCceEEEEeCCccHHHHHHh---c-CC
Confidence 44543 344444432 3458999999999999999988775221 115678889998876543322 1 35
Q ss_pred CccEEEEcCc-----ccc-ccCcCCCcEEEE
Q psy9509 173 KIDLVVASDN-----LAR-GIDVENIDVVIN 197 (231)
Q Consensus 173 ~~~vlv~T~~-----~~~-Gidi~~v~~vi~ 197 (231)
..+|+|+|.- +.. ..++..+.++|.
T Consensus 122 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 122 TVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp CCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 6789999962 222 245566777654
No 95
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=88.39 E-value=1.1 Score=41.86 Aligned_cols=92 Identities=10% Similarity=0.091 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc----cEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 98 NLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM----NIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 98 ~~k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~----~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..|-.+.+-.+... .+.+++|.++|++-+.++++.++..... .+. .+..+||+.+..++.+..+.++.
T Consensus 82 SGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~------~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 82 VGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEK------AGVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp SCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTT------TCCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred CCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhh------cCCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 55654444444322 5678999999999999999999876321 134 78999999999888777777777
Q ss_pred CCccEEEEcCc-cccccC-cCCCcEEEE
Q psy9509 172 RKIDLVVASDN-LARGID-VENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~-~~~Gid-i~~v~~vi~ 197 (231)
.+|+|+|+- +..-+. +..+.++|.
T Consensus 156 --~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 --FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp --CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred --CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 899999962 111111 446666654
No 96
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=86.26 E-value=0.88 Score=33.84 Aligned_cols=90 Identities=12% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-.. +..++... .+.++||.+++++.+.+.++.+..... ..+..+..++|+.+..+....+
T Consensus 61 GsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~----- 129 (224)
T 1qde_A 61 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF------HMDIKVHACIGGTSFVEDAEGL----- 129 (224)
T ss_dssp TSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT------TSCCCEEEECC----------C-----
T ss_pred CCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc------ccCceEEEEeCCcchHHHHhcC-----
Confidence 3556544 44445432 456899999999999999998876521 1256788889887654433221
Q ss_pred CCccEEEEcCcc------ccccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------ARGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. ....++..+.++|.
T Consensus 130 ~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 130 RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp TTCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 237899999531 23455666776654
No 97
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=86.15 E-value=2.8 Score=34.83 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=52.1
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G- 186 (231)
+.++||.++|++-+.++++.+++... ..+..+..++|+.+..++...+ ....+|+|+|.- +.++
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~------~~~~~~~~~~gg~~~~~~~~~l----~~~~~Ivv~Tp~~l~~~l~~~~ 198 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAF------ESYLKIGIVYGGTSFRHQNECI----TRGCHVVIATPGRLLDFVDRTF 198 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTT------TSSCCCCEECTTSCHHHHHHHH----TTCCSEEEECHHHHHHHHHTTS
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhc------cCCcEEEEEECCCCHHHHHHHh----hcCCCEEEEChHHHHHHHHhCC
Confidence 45899999999999999998887521 1246788899998866543322 246789999952 2222
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 199 ~~l~~~~~lVl 209 (434)
T 2db3_A 199 ITFEDTRFVVL 209 (434)
T ss_dssp CCCTTCCEEEE
T ss_pred cccccCCeEEE
Confidence 45667777664
No 98
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=85.96 E-value=2.4 Score=32.13 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-c-----cccc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-L-----ARGI 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~-----~~Gi 187 (231)
.++||.+++++-+.+.++.++.... ..+..+..++|+.+.......+ ....+|+|+|.- + ...+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~ 170 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSL------NTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKI 170 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHT------TSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSB
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhc------cCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCC
Confidence 5899999999999999998877521 1146778889888755443222 346789999963 1 1235
Q ss_pred CcCCCcEEEE
Q psy9509 188 DVENIDVVIN 197 (231)
Q Consensus 188 di~~v~~vi~ 197 (231)
++..+.++|.
T Consensus 171 ~~~~~~~lVi 180 (253)
T 1wrb_A 171 SLEFCKYIVL 180 (253)
T ss_dssp CCTTCCEEEE
T ss_pred ChhhCCEEEE
Confidence 6667777664
No 99
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=85.64 E-value=2.7 Score=33.86 Aligned_cols=92 Identities=13% Similarity=0.254 Sum_probs=60.2
Q ss_pred CChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 98 NLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 98 ~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
..|-.. +..++... .+.++||.|+++.-+++.++.+.+.... ..+..+..++|+.+..... +.+..+
T Consensus 56 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~---~~~~~~ 127 (391)
T 1xti_A 56 MGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKY-----MPNVKVAVFFGGLSIKKDE---EVLKKN 127 (391)
T ss_dssp SSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTT-----CTTCCEEEECTTSCHHHHH---HHHHHS
T ss_pred CcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhh-----CCCeEEEEEeCCCCHHHHH---HHHhcC
Confidence 456443 34444332 3458999999999999998888775211 1157788999998865544 344567
Q ss_pred CccEEEEcCc-c-----ccccCcCCCcEEEE
Q psy9509 173 KIDLVVASDN-L-----ARGIDVENIDVVIN 197 (231)
Q Consensus 173 ~~~vlv~T~~-~-----~~Gidi~~v~~vi~ 197 (231)
..+|+|+|.- + ...+++..+.+||.
T Consensus 128 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 128 CPHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CCSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 7899999953 1 22345667776664
No 100
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=84.97 E-value=2.2 Score=31.75 Aligned_cols=75 Identities=11% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc------ccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN------LAR 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~------~~~ 185 (231)
.+.++||.+++++-+.++++.++... ..+..+..++|+.+...+.. .+. ...+|+|+|.- ...
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~---~~~-~~~~iiv~Tp~~l~~~~~~~ 161 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS-------YKGLKSICIYGGRNRNGQIE---DIS-KGVDIIIATPGRLNDLQMNN 161 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC-------CTTCCEEEECC------CHH---HHH-SCCSEEEECHHHHHHHHHTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc-------ccCceEEEEECCCChHHHHH---Hhc-CCCCEEEECHHHHHHHHHcC
Confidence 45679999999999999999988752 12567888888876544332 222 34789999952 123
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.+++..+.++|.
T Consensus 162 ~~~~~~~~~lVi 173 (228)
T 3iuy_A 162 SVNLRSITYLVI 173 (228)
T ss_dssp CCCCTTCCEEEE
T ss_pred CcCcccceEEEE
Confidence 456677777664
No 101
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=84.05 E-value=3.1 Score=33.51 Aligned_cols=75 Identities=12% Similarity=0.191 Sum_probs=50.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc------cc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL------AR 185 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~------~~ 185 (231)
.+.+++|.++++.-+.+.++.+..... ..+..+..++|+.+..+....+. ..+|+|+|.-. ..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~ 156 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAF------HMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRR 156 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT------TSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhc------cCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhC
Confidence 456899999999999999988876521 12577889999988766554433 46799998421 12
Q ss_pred ccCcCCCcEEEE
Q psy9509 186 GIDVENIDVVIN 197 (231)
Q Consensus 186 Gidi~~v~~vi~ 197 (231)
.++...+.+||.
T Consensus 157 ~~~~~~~~~vIi 168 (394)
T 1fuu_A 157 RFRTDKIKMFIL 168 (394)
T ss_dssp SSCCTTCCEEEE
T ss_pred CcchhhCcEEEE
Confidence 234455666554
No 102
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.41 E-value=7.4 Score=31.58 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=50.9
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----ccc-cc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LAR-GI 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-Gi 187 (231)
.++||.+++++-+.++++.++.... ..+..+..++|+.+..+.... + ....+|+|+|.- +.. .+
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~---~-~~~~~I~v~Tp~~l~~~l~~~~~ 171 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSY------RSRVRPCVVYGGADIGQQIRD---L-ERGCHLLVATPGRLVDMMERGKI 171 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHT------TSSCCEEEECSSSCHHHHHHH---H-TTCCSEEEECHHHHHHHHHTTSB
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhC------cCCceEEEEECCCCHHHHHHH---h-hCCCCEEEEChHHHHHHHHcCCc
Confidence 4799999999999999999877521 125678889999876554332 2 245789999962 112 24
Q ss_pred CcCCCcEEEE
Q psy9509 188 DVENIDVVIN 197 (231)
Q Consensus 188 di~~v~~vi~ 197 (231)
++..+.+||.
T Consensus 172 ~~~~~~~iVi 181 (417)
T 2i4i_A 172 GLDFCKYLVL 181 (417)
T ss_dssp CCTTCCEEEE
T ss_pred ChhhCcEEEE
Confidence 5666776664
No 103
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.02 E-value=8.5 Score=31.60 Aligned_cols=89 Identities=16% Similarity=0.191 Sum_probs=57.7
Q ss_pred CChHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..|-......+.. ..+.++||.|+++.-+.+.++.+.+..+. ....+..+||+....++..... ..
T Consensus 34 ~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~-----~~ 102 (494)
T 1wp9_A 34 LGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNL------PPEKIVALTGEKSPEERSKAWA-----RA 102 (494)
T ss_dssp SCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCS------CGGGEEEECSCSCHHHHHHHHH-----HC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCc------chhheEEeeCCcchhhhhhhcc-----CC
Confidence 4564443333322 25679999999999999999999876310 1348899999998776544332 35
Q ss_pred cEEEEcCc-cc-----cccCcCCCcEEEE
Q psy9509 175 DLVVASDN-LA-----RGIDVENIDVVIN 197 (231)
Q Consensus 175 ~vlv~T~~-~~-----~Gidi~~v~~vi~ 197 (231)
+|+|+|.- +. ..+.....++||.
T Consensus 103 ~ivv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 103 KVIVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp SEEEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred CEEEecHHHHHHHHhcCCcchhhceEEEE
Confidence 79999842 21 1344556666654
No 104
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=82.92 E-value=12 Score=33.08 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=60.7
Q ss_pred eeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEE-----------------
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV----------------- 153 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~----------------- 153 (231)
.+.-+....|...+..++... +.++||.+++...|.+++..|+..++. ..+..+
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~-~~~~lvv~~~~~~A~ql~~el~~~~~~--------~~V~~fps~yd~~~pe~~~~~~d 102 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEAL-GRPALVLAPNKILAAQLAAEFRELFPE--------NAVEYFISYYDYYQPEAYVPGKD 102 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHH-TCCEEEEESSHHHHHHHHHHHHHHCTT--------SEEEECCCGGGTSCCCEEEGGGT
T ss_pred EEEcCCCcHHHHHHHHHHHHh-CCCEEEEecCHHHHHHHHHHHHHHCCC--------CeEEEcCchhhccCcccccchhh
Confidence 455567788888888777655 357999999999999999999988542 222222
Q ss_pred ---cCCC--C---HHHHHHHHHHHHcCCccEEEEcCcccccc
Q psy9509 154 ---YSDL--K---FDQRNKIIQEFRRRKIDLVVASDNLARGI 187 (231)
Q Consensus 154 ---h~~~--~---~~~r~~~~~~f~~~~~~vlv~T~~~~~Gi 187 (231)
|... + ...|..++..+..+.-.|+|+|-.+-.|+
T Consensus 103 ~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l~~~ 144 (664)
T 1c4o_A 103 LYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAIYGL 144 (664)
T ss_dssp EEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGCSCC
T ss_pred hhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHhcC
Confidence 2222 2 45688889998877656777774433554
No 105
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=82.70 E-value=1.3 Score=34.89 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=56.2
Q ss_pred CCChHH-HHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPL-VLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~-~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|.. +++.++... .+.++||.++|++-+.++++.++..... ..+..+...+|+....... .
T Consensus 141 GsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~-------~ 208 (300)
T 3fmo_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-----YPELKLAYAVRGNKLERGQ-------K 208 (300)
T ss_dssp TSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-----STTCCEEEESTTCCCCTTC-------C
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhh-----CCCcEEEEEeCCccHhhhh-------c
Confidence 355644 344555543 3347999999999999998888775210 1145677777765432111 3
Q ss_pred CCccEEEEcCcc------c-cccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------A-RGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~-~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. . ..+++..+.++|.
T Consensus 209 ~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEE
T ss_pred CCCCEEEECHHHHHHHHHhcCCCChhhceEEEE
Confidence 456799999632 1 3567778888765
No 106
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=82.49 E-value=5.3 Score=31.65 Aligned_cols=90 Identities=16% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCChHHH-HHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 97 TNLKPLV-LYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
...|-.. +..++.. ..+.+++|.++++.-+++.++.++...+. .+..+..++|+.......... .
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~---~-- 122 (367)
T 1hv8_A 54 GSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN------KNLKIAKIYGGKAIYPQIKAL---K-- 122 (367)
T ss_dssp SSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS------SCCCEEEECTTSCHHHHHHHH---H--
T ss_pred CChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC------CCceEEEEECCcchHHHHhhc---C--
Confidence 3556543 3333332 24678999999999999999999876321 246788888888765543332 2
Q ss_pred CccEEEEcCc-c----c-cccCcCCCcEEEE
Q psy9509 173 KIDLVVASDN-L----A-RGIDVENIDVVIN 197 (231)
Q Consensus 173 ~~~vlv~T~~-~----~-~Gidi~~v~~vi~ 197 (231)
..+|+|+|.- + . ..+++..+++||.
T Consensus 123 ~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 123 NANIVVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp TCSEEEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred CCCEEEecHHHHHHHHHcCCcccccCCEEEE
Confidence 5689999853 1 1 1244566666654
No 107
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=82.31 E-value=2.6 Score=35.76 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=50.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-c----ccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-L----ARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~----~~G- 186 (231)
+.++||.+++++-+.+.++.++...+. .+..+..++|+.+...+...+. +..+|+|+|.- + ..+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 121 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFER------LGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGA 121 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT------TTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhcc------CCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCc
Confidence 678999999999999998888776321 1577899999986554322221 13679999853 1 122
Q ss_pred c-CcCCCcEEEE
Q psy9509 187 I-DVENIDVVIN 197 (231)
Q Consensus 187 i-di~~v~~vi~ 197 (231)
+ ++..+.+||.
T Consensus 122 ~~~~~~~~~vVi 133 (555)
T 3tbk_A 122 IPSLSVFTLMIF 133 (555)
T ss_dssp SCCGGGCSEEEE
T ss_pred ccccccCCEEEE
Confidence 2 4556666664
No 108
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=81.97 E-value=4.8 Score=36.35 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=47.8
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G- 186 (231)
+.++||.++++.-+.+.+..++...+. .+..+..+||+.+...+...+. +..+|+|+|.- +..+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~------~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~ 365 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER------QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGT 365 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG------GTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhccc------CCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcc
Confidence 678999999999999998888776321 1578999999986555432221 35789999843 1222
Q ss_pred c-CcCCCcEEEE
Q psy9509 187 I-DVENIDVVIN 197 (231)
Q Consensus 187 i-di~~v~~vi~ 197 (231)
+ ++..+.+||.
T Consensus 366 ~~~~~~~~~iVi 377 (797)
T 4a2q_A 366 LTSLSIFTLMIF 377 (797)
T ss_dssp CCCGGGCSEEEE
T ss_pred ccccccCCEEEE
Confidence 2 4556677664
No 109
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=81.39 E-value=3.8 Score=34.82 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=47.3
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc-----ccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL-----ARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~-----~~G- 186 (231)
+.++||.+++++-+.+.++.+....+. .+..+..+||+.+...+...+. ...+|+|+|.-. ..+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~ 124 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFER------QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGT 124 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGG------GTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc------cCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCc
Confidence 678999999999999999888776321 1577889999886554432221 136799998531 222
Q ss_pred c-CcCCCcEEEE
Q psy9509 187 I-DVENIDVVIN 197 (231)
Q Consensus 187 i-di~~v~~vi~ 197 (231)
+ ++..+++||.
T Consensus 125 ~~~~~~~~~vVi 136 (556)
T 4a2p_A 125 LTSLSIFTLMIF 136 (556)
T ss_dssp CCCSTTCSEEEE
T ss_pred ccccccCCEEEE
Confidence 3 4566776654
No 110
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=80.73 E-value=6.8 Score=31.64 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=57.8
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-.. +..++... .+.+++|.++++.-+++.++.++.... ..+..+..++|+......... ..
T Consensus 68 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~----~~ 137 (400)
T 1s2m_A 68 GTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK------HCGISCMVTTGGTNLRDDILR----LN 137 (400)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT------TTTCCEEEECSSSCHHHHHHH----TT
T ss_pred CcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc------ccCceEEEEeCCcchHHHHHH----hc
Confidence 3556543 33344332 455899999999999999998887622 125678888898875443221 23
Q ss_pred CCccEEEEcCc-----ccc-ccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDN-----LAR-GIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~-----~~~-Gidi~~v~~vi~ 197 (231)
+..+|+|+|.- +.. ..++..+.+||.
T Consensus 138 ~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIi 169 (400)
T 1s2m_A 138 ETVHILVGTPGRVLDLASRKVADLSDCSLFIM 169 (400)
T ss_dssp SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEEchHHHHHHHHhCCcccccCCEEEE
Confidence 56789999942 222 355666777654
No 111
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=80.47 E-value=6.8 Score=35.59 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCh-HHHHHHHH-HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLK-PLVLYQLI-RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k-~~~l~~ll-~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
+.| +.+++-++ ....+..++|.++|++-|.+.++.+...... .++.+..+.|+++..+|.... ..+
T Consensus 107 eGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~------lgl~v~~i~gg~~~~~r~~~~------~~d 174 (844)
T 1tf5_A 107 EGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEF------LGLTVGLNLNSMSKDEKREAY------AAD 174 (844)
T ss_dssp SCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHH------TTCCEEECCTTSCHHHHHHHH------HSS
T ss_pred cHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhh------cCCeEEEEeCCCCHHHHHHhc------CCC
Confidence 445 33333333 4456778999999999999998888765221 167899999999877655432 368
Q ss_pred EEEEcC
Q psy9509 176 LVVASD 181 (231)
Q Consensus 176 vlv~T~ 181 (231)
|+++|+
T Consensus 175 Iv~gTp 180 (844)
T 1tf5_A 175 ITYSTN 180 (844)
T ss_dssp EEEEEH
T ss_pred EEEECc
Confidence 999996
No 112
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=80.38 E-value=5.9 Score=36.01 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=50.2
Q ss_pred CCh-HHHHHHHH-HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 98 NLK-PLVLYQLI-RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 98 ~~k-~~~l~~ll-~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
+.| +.+++.++ ....+.+++|.++|++-|.+.++.+...... .++.+..+.|+++...|.... ..+
T Consensus 98 sGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~------lgl~v~~i~GG~~~~~r~~~~------~~d 165 (853)
T 2fsf_A 98 EGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF------LGLTVGINLPGMPAPAKREAY------AAD 165 (853)
T ss_dssp SCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH------TTCCEEECCTTCCHHHHHHHH------HSS
T ss_pred chHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh------cCCeEEEEeCCCCHHHHHHhc------CCC
Confidence 445 33344443 3446778999999999999998888765221 167899999999876554332 378
Q ss_pred EEEEcC
Q psy9509 176 LVVASD 181 (231)
Q Consensus 176 vlv~T~ 181 (231)
|+++|+
T Consensus 166 IvvgTp 171 (853)
T 2fsf_A 166 ITYGTN 171 (853)
T ss_dssp EEEEEH
T ss_pred EEEECC
Confidence 999996
No 113
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=79.62 E-value=2.9 Score=27.29 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 105 YQLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 105 ~~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+... ...++++||.+-..+...+..|... |+.+..+.|++.
T Consensus 46 ~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~----------G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKILERDKKYAVICAHGNRSAAAVEFLSQL----------GLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTT----------TCCEEEETTHHH
T ss_pred HHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHc----------CCCEEEEcCcHH
Confidence 3334333 4568999999998899999999887 778888888764
No 114
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=77.89 E-value=19 Score=31.70 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=74.3
Q ss_pred eeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEc----------------
Q psy9509 91 KLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY---------------- 154 (231)
Q Consensus 91 ~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h---------------- 154 (231)
.+.-+....|...+..++.... +++||.+++...|.+++..|+..++. ..+..+-
T Consensus 36 ~l~g~~gs~k~~~~a~~~~~~~-~~~lvv~~~~~~A~~l~~el~~~~~~--------~~v~~fps~yd~~~pe~~~~~~d 106 (661)
T 2d7d_A 36 TLLGATGTGKTFTVSNLIKEVN-KPTLVIAHNKTLAGQLYSEFKEFFPN--------NAVEYFVSYYDYYQPEAYVPQTD 106 (661)
T ss_dssp EEEECTTSCHHHHHHHHHHHHC-CCEEEECSSHHHHHHHHHHHHHHCTT--------SEEEEECCCEEEEECCEEETTTT
T ss_pred EEECcCCcHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHHHHHHcCC--------CcEEEccccccccCccccCCcch
Confidence 4555677888888887776653 47999999999999999999988542 2232222
Q ss_pred ----CC-----CCHHHHHHHHHHHHcCCccEEEEcCccccccCcC----CCcEEEEecCCCCHHHHHHHh
Q psy9509 155 ----SD-----LKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE----NIDVVINYEAPDNIKKYIHRI 211 (231)
Q Consensus 155 ----~~-----~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~----~v~~vi~~~~p~~~~~~~qr~ 211 (231)
.. .....|..++..+..+.-.|+|+|-.+-.++=-| ...+.+..+-..+...+.++.
T Consensus 107 ~y~~~~~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al~~l~~~~~~~~~~~~l~~G~~~~~~~l~~~L 176 (661)
T 2d7d_A 107 TFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCIYGLGSPEEYREMVVSLRTEMEIERNELLRKL 176 (661)
T ss_dssp EEECCEEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGGSCBCCHHHHHHHCEEEETTCBCCHHHHHHHH
T ss_pred hhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHHcCCCCHHHHHhccEEEeCCCEeCHHHHHHHH
Confidence 11 1245688899999877655777774433555333 124456666666777776654
No 115
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=77.02 E-value=19 Score=27.98 Aligned_cols=88 Identities=22% Similarity=0.247 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEE
Q psy9509 98 NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177 (231)
Q Consensus 98 ~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vl 177 (231)
..|-......+.. .+.+++|.++++.-+.+.++.+++... ..+..+..++|+.+....... +. ..+|+
T Consensus 42 sGKT~~~~~~~~~-~~~~~liv~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~ 109 (337)
T 2z0m_A 42 SGKTAAYAIPILE-LGMKSLVVTPTRELTRQVASHIRDIGR------YMDTKVAEVYGGMPYKAQINR---VR--NADIV 109 (337)
T ss_dssp SSHHHHHHHHHHH-HTCCEEEECSSHHHHHHHHHHHHHHTT------TSCCCEEEECTTSCHHHHHHH---HT--TCSEE
T ss_pred CcHHHHHHHHHHh-hcCCEEEEeCCHHHHHHHHHHHHHHhh------hcCCcEEEEECCcchHHHHhh---cC--CCCEE
Confidence 4565433332222 256899999999999999999986521 125678889998886654332 22 37799
Q ss_pred EEcCcc-----c-cccCcCCCcEEEE
Q psy9509 178 VASDNL-----A-RGIDVENIDVVIN 197 (231)
Q Consensus 178 v~T~~~-----~-~Gidi~~v~~vi~ 197 (231)
|+|.-. . ..+++..+++||.
T Consensus 110 v~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 110 VATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp EECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred EECHHHHHHHHHcCCcchhhCcEEEE
Confidence 999531 1 2234556666553
No 116
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=76.61 E-value=8 Score=35.59 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+....+.+++|.++|+.-|.+.++.+..... ..++.+..+.|+++..+|.... ..+|+++|+
T Consensus 115 L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~------~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 115 LNALTGKGVHVVTVNDYLARRDAEWMGPVYR------GLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HHHTTCSCCEEEESSHHHHHHHHHHHHHHHH------TTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHHHhCCCEEEEeCCHHHHHHHHHHHHHHHH------hcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3445677899999999999999988877632 1268899999999977665543 368888885
No 117
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=76.30 E-value=9.6 Score=34.91 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=46.8
Q ss_pred HHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 108 IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 108 l~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+....+.+++|.++|+.-|.+.++.+...... .++.+..+.|+++..+|.... ..+|+++|+
T Consensus 147 l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~------lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 147 LNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF------LGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp HHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH------TTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred HHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh------cCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 34456778999999999999888888765221 167899999999977665443 368999996
No 118
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=76.25 E-value=22 Score=30.12 Aligned_cols=115 Identities=9% Similarity=0.070 Sum_probs=76.2
Q ss_pred ceeeecCCCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCC-------C-C---
Q psy9509 90 EKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD-------L-K--- 158 (231)
Q Consensus 90 ~~~~~~~~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~-------~-~--- 158 (231)
+.+.-+....|...+..+.+.. +++++|.+++...|.++++.|+...+ . .+..+-+. . +
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~~-~~p~lvv~~~~~~A~~l~~~l~~~~~--------~-~v~~fp~~e~lpyd~~~p~~~ 86 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTD--------Q-MVMNLADWETLPYDSFSPHQD 86 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHHS-SSCEEEEESSHHHHHHHHHHHHHTCS--------S-CEEECCCCCSCTTCSSCCCHH
T ss_pred EEEeCCCchHHHHHHHHHHHHh-CCCEEEEeCCHHHHHHHHHHHHhhCC--------C-cEEEEeCcccccccccCCChH
Confidence 4455566777887777777654 45899999999999999999987643 1 13333221 1 1
Q ss_pred -HHHHHHHHHHHHcCCccEEEEcCccccccCcC-----CCcEEEEecCCCCHHHHHHHhccc
Q psy9509 159 -FDQRNKIIQEFRRRKIDLVVASDNLARGIDVE-----NIDVVINYEAPDNIKKYIHRIGRT 214 (231)
Q Consensus 159 -~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~-----~v~~vi~~~~p~~~~~~~qr~GR~ 214 (231)
..+|..++.++..++..|+|+|-.+-.+.=.| ...+.+..+-..+...+.++.-..
T Consensus 87 ~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L~~~ 148 (483)
T 3hjh_A 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 (483)
T ss_dssp HHHHHHHHHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHHHHc
Confidence 14578888888888878888874443333333 235567777777888777765333
No 119
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=76.03 E-value=3.9 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.294 Sum_probs=29.1
Q ss_pred CcEEEEE-cchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 114 QGVLCFV-NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 114 ~~~iIF~-~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
.++++|| .+-..+..++..|+.. |+.+..+.|++.
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~----------G~~v~~l~GG~~ 125 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSL----------GVNVYQLEGGYK 125 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHT----------TCCCEEETTHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHc----------CCceEEEeCcHH
Confidence 6899999 5777888999999887 678888888865
No 120
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=75.89 E-value=1.8 Score=32.04 Aligned_cols=79 Identities=8% Similarity=0.091 Sum_probs=49.0
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----ccc-c
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LAR-G 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~-G 186 (231)
+.+++|.+++++-+.+.++.+++...... ...+..+..++|+.+..+..+ .+ .+..+|+|+|.- +.. .
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~ 145 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCP--KDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQA 145 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSC--GGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcc--cccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCC
Confidence 56899999999999999998877532110 011456778888875433211 11 235679999952 222 3
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
+++..+.++|.
T Consensus 146 ~~~~~~~~lVi 156 (219)
T 1q0u_A 146 LDVHTAHILVV 156 (219)
T ss_dssp CCGGGCCEEEE
T ss_pred CCcCcceEEEE
Confidence 45666776654
No 121
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=75.87 E-value=21 Score=26.73 Aligned_cols=61 Identities=20% Similarity=0.084 Sum_probs=44.2
Q ss_pred CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 97 TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
...|-......+... +.+++|+++++..+++.++.+.+. +.. +..++|+.. ...+
T Consensus 118 G~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~~----------~~~~v~~~~g~~~-------------~~~~ 173 (237)
T 2fz4_A 118 GSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF----------GEEYVGEFSGRIK-------------ELKP 173 (237)
T ss_dssp STTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGGG----------CGGGEEEESSSCB-------------CCCS
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhC----------CCCeEEEEeCCCC-------------CcCC
Confidence 456766555555444 568999999999999999988874 566 778888654 2457
Q ss_pred EEEEcC
Q psy9509 176 LVVASD 181 (231)
Q Consensus 176 vlv~T~ 181 (231)
|+|+|.
T Consensus 174 i~v~T~ 179 (237)
T 2fz4_A 174 LTVSTY 179 (237)
T ss_dssp EEEEEH
T ss_pred EEEEeH
Confidence 888873
No 122
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=75.41 E-value=3.5 Score=25.98 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=29.5
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
.++++||.+-..+...+..|... ++.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~----------G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAE----------GYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHH----------TCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHc----------CCcEEEEcccHH
Confidence 68999999998899999999887 667777888764
No 123
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=75.39 E-value=2.6 Score=26.94 Aligned_cols=37 Identities=8% Similarity=0.127 Sum_probs=30.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||.+-..+...+..|... |+.+..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~----------G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQN----------GVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----------TCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHC----------CCCEEEecccHH
Confidence 4568999999999999999999887 777888888753
No 124
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=74.43 E-value=2.4 Score=27.54 Aligned_cols=36 Identities=6% Similarity=0.030 Sum_probs=29.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL 157 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 157 (231)
...+++++|.+-..+...+..|.+. |+.+..+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~----------G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN----------GIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT----------TCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHc----------CCCEEEecChH
Confidence 3568999999988899999999887 77777777765
No 125
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=74.21 E-value=2.5 Score=27.23 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=30.3
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||.+-..+...+..|... |+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~----------G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEAN----------GIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTT----------TCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHC----------CCCeEEeCCCHH
Confidence 4568999999988899999999887 777888888753
No 126
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=71.40 E-value=4.1 Score=33.08 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=57.6
Q ss_pred CChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 98 NLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 98 ~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
..|-.. +..++... .+.+++|.++++.-+.+.++.++..... .+..+...+|+..... ..+.+..+
T Consensus 88 sGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~------~~~~~~~~~~~~~~~~---~~~~~~~~ 158 (414)
T 3eiq_A 88 TGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY------MGASCHACIGGTNVRA---EVQKLQME 158 (414)
T ss_dssp SSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG------SCCCEEECCCCTTHHH---HHHHHTTT
T ss_pred CcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc------cCceEEEEECCcchHH---HHHHHhcC
Confidence 456543 44444433 4568999999999999999998875211 1456677777765433 34555667
Q ss_pred CccEEEEcCc-----ccc-ccCcCCCcEEEE
Q psy9509 173 KIDLVVASDN-----LAR-GIDVENIDVVIN 197 (231)
Q Consensus 173 ~~~vlv~T~~-----~~~-Gidi~~v~~vi~ 197 (231)
..+|+|+|.- +.. .++...+.+||.
T Consensus 159 ~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 159 APHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 8899999942 222 244555666553
No 127
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=71.20 E-value=1.6 Score=38.57 Aligned_cols=73 Identities=12% Similarity=0.253 Sum_probs=47.2
Q ss_pred CcEEEEEcchHHHHHH-HHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-ccc------
Q psy9509 114 QGVLCFVNTAQGAHRL-ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-LAR------ 185 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~------ 185 (231)
.++||.++++.-+.+. ++.+++..+. .+.+..++|+.+..++...+. +..+|+|+|.- +..
T Consensus 57 ~~vlvl~P~~~L~~Q~~~~~l~~~~~~-------~~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~ 125 (699)
T 4gl2_A 57 GKVIVLVNKVLLVEQLFRKEFQPFLKK-------WYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLE 125 (699)
T ss_dssp CCBCCEESCSHHHHHHHHHTHHHHHTT-------TSCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC---
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHcCc-------CceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccc
Confidence 7899999999999999 8888876331 378999999876554332222 56789999852 221
Q ss_pred -----ccCcCCCcEEEE
Q psy9509 186 -----GIDVENIDVVIN 197 (231)
Q Consensus 186 -----Gidi~~v~~vi~ 197 (231)
.+.+..+++||.
T Consensus 126 ~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 126 NGEDAGVQLSDFSLIII 142 (699)
T ss_dssp -----CCCGGGCSEEEE
T ss_pred cccccceecccCcEEEE
Confidence 245566777654
No 128
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=71.15 E-value=17 Score=30.18 Aligned_cols=61 Identities=20% Similarity=0.061 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCCHHHHHHHHHHHHcCCcc
Q psy9509 97 TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLKFDQRNKIIQEFRRRKID 175 (231)
Q Consensus 97 ~~~k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~~~~r~~~~~~f~~~~~~ 175 (231)
...|.......+... +.++||.|+++.-+.+.++.+.+. +.. +..+||+... ..+
T Consensus 118 GsGKT~~~l~~i~~~-~~~~Lvl~P~~~L~~Q~~~~~~~~----------~~~~v~~~~g~~~~-------------~~~ 173 (472)
T 2fwr_A 118 GSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGIF----------GEEYVGEFSGRIKE-------------LKP 173 (472)
T ss_dssp TSCHHHHHHHHHHHH-CSCEEEEESSHHHHHHHHHHGGGG----------CGGGEEEBSSSCBC-------------CCS
T ss_pred CCCHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHhC----------CCcceEEECCCcCC-------------cCC
Confidence 355765554444444 568999999999999999999884 567 8889987652 356
Q ss_pred EEEEcC
Q psy9509 176 LVVASD 181 (231)
Q Consensus 176 vlv~T~ 181 (231)
|+|+|.
T Consensus 174 Ivv~T~ 179 (472)
T 2fwr_A 174 LTVSTY 179 (472)
T ss_dssp EEEEEH
T ss_pred EEEEEc
Confidence 888874
No 129
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=69.89 E-value=41 Score=27.00 Aligned_cols=91 Identities=9% Similarity=0.082 Sum_probs=58.2
Q ss_pred CCChHH-HHHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPL-VLYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~-~l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-. ++..++... .+.++||.+++++-+.+.++.+..... ..+..+..++|+....+....+.
T Consensus 84 GsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~---- 153 (410)
T 2j0s_A 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGD------YMNVQCHACIGGTNVGEDIRKLD---- 153 (410)
T ss_dssp TSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT------TTTCCEEEECTTSCHHHHHHHHH----
T ss_pred CCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhc------cCCeEEEEEECCCCHHHHHHHhh----
Confidence 355654 344444432 467899999999999999998877521 12567888899887665443332
Q ss_pred CCccEEEEcC-----cccc-ccCcCCCcEEEE
Q psy9509 172 RKIDLVVASD-----NLAR-GIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~-----~~~~-Gidi~~v~~vi~ 197 (231)
...+|+|+|. .+.. .++...+.+||.
T Consensus 154 ~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 154 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp HCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred cCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 2457999994 2223 345556666654
No 130
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.63 E-value=5 Score=29.19 Aligned_cols=74 Identities=9% Similarity=0.227 Sum_probs=43.1
Q ss_pred CCcEEEEEcchHHHHH-HHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc-----cc-
Q psy9509 113 MQGVLCFVNTAQGAHR-LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL-----AR- 185 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~-l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~-----~~- 185 (231)
+.+++|.|+++..+++ ..+.+..... .+..+..++|+.....+...+. +..+|+|+|.-. ..
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~-------~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLK-------KWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHT-------TTSCEEECCC---CCCCHHHHH----HHCSEEEEEHHHHHHHHHC-
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhc-------cCceEEEEeCCcccchhHHhhc----cCCCEEEECHHHHHHHHhcc
Confidence 5789999999998888 6666655421 1456778888654332211111 246799998531 11
Q ss_pred ------ccCcCCCcEEEE
Q psy9509 186 ------GIDVENIDVVIN 197 (231)
Q Consensus 186 ------Gidi~~v~~vi~ 197 (231)
++.+..+.+||.
T Consensus 151 ~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp ------CCCGGGCSEEEE
T ss_pred CcccccccchhcccEEEE
Confidence 245566666664
No 131
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=69.34 E-value=7.8 Score=25.00 Aligned_cols=43 Identities=9% Similarity=0.175 Sum_probs=32.6
Q ss_pred HHHHhc-CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 106 QLIRKH-AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 106 ~ll~~~-~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
..+... ...++++||.+-..+..++..|... |+. +..+.|++.
T Consensus 50 ~~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~----------G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 50 AFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQ----------GYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHSCTTSCEEEECSSSSHHHHHHHHHHHH----------TCSSEEEETTHHH
T ss_pred HHHHhcCCCCCEEEEcCCCchHHHHHHHHHHc----------CCceEEEecCCHH
Confidence 334433 4568999999988899999999887 664 778888764
No 132
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=68.42 E-value=12 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~ 136 (231)
...++++||.+-..+...+..|.+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~ 64 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEM 64 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHc
Confidence 4568999999988899999999886
No 133
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=68.19 E-value=16 Score=30.67 Aligned_cols=87 Identities=14% Similarity=0.093 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..|.......+.. ....++||.++++.-+++.++.++.... ..+..+..++|+.+..++ ..+..
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~------~~~~~v~~~~~~~~~~~~-------~~~~~ 205 (510)
T 2oca_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL------FSHAMIKKIGGGASKDDK-------YKNDA 205 (510)
T ss_dssp TTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTS------SCGGGEEECGGGCCTTGG-------GCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhc------CCccceEEEecCCccccc-------cccCC
Confidence 4565543333322 2344999999999999999999976511 114578889998775543 35778
Q ss_pred cEEEEcCc-cccc--cCcCCCcEEEE
Q psy9509 175 DLVVASDN-LARG--IDVENIDVVIN 197 (231)
Q Consensus 175 ~vlv~T~~-~~~G--idi~~v~~vi~ 197 (231)
+|+|+|.- +... ..+.+..+||.
T Consensus 206 ~I~i~T~~~l~~~~~~~~~~~~liIi 231 (510)
T 2oca_A 206 PVVVGTWQTVVKQPKEWFSQFGMMMN 231 (510)
T ss_dssp SEEEEEHHHHTTSCGGGGGGEEEEEE
T ss_pred cEEEEeHHHHhhchhhhhhcCCEEEE
Confidence 89999842 2222 33445555554
No 134
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=67.56 E-value=5.6 Score=26.54 Aligned_cols=44 Identities=11% Similarity=0.034 Sum_probs=32.4
Q ss_pred HHHHHhc-CCCcEEEEEcchHH--HHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 105 YQLIRKH-AMQGVLCFVNTAQG--AHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 105 ~~ll~~~-~~~~~iIF~~s~~~--~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...+... ...++++||.+-.. +..++..|... |+.+..+.|++.
T Consensus 62 ~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~----------G~~v~~l~GG~~ 108 (124)
T 3flh_A 62 ATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSA----------GFEAYELAGALE 108 (124)
T ss_dssp HHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHH----------TCEEEEETTHHH
T ss_pred HHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHc----------CCeEEEeCCcHH
Confidence 3334333 45679999999776 78899999887 777888888763
No 135
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=67.15 E-value=4.5 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=29.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... |+. +..+.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~----------G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSA----------GFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHT----------TCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHc----------CCcCEEEecCCHH
Confidence 4567999999988899999999887 664 777778753
No 136
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=66.96 E-value=14 Score=32.48 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=49.4
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc-c
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG-I 187 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G-i 187 (231)
.++||.++++..+.+.++.+++..+ ..++.+..++|+.+...+...+ . ...+|+|+|.- +..+ +
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~------~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~ 131 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFE------RHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTI 131 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTT------TTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSS
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhc------cCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcc
Confidence 6899999999999998888877632 1267889999987643322221 1 24789999953 2222 2
Q ss_pred -CcCCCcEEEE
Q psy9509 188 -DVENIDVVIN 197 (231)
Q Consensus 188 -di~~v~~vi~ 197 (231)
++..+++||.
T Consensus 132 ~~l~~~~~vVi 142 (696)
T 2ykg_A 132 PSLSIFTLMIF 142 (696)
T ss_dssp CCGGGCSEEEE
T ss_pred cccccccEEEE
Confidence 4566677664
No 137
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=66.06 E-value=6 Score=26.60 Aligned_cols=37 Identities=5% Similarity=0.130 Sum_probs=30.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... |+. +..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHA----------GFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHH----------HCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc----------CCCCeEEeCCcHH
Confidence 4568999999988899999999887 664 778888864
No 138
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=65.29 E-value=32 Score=29.49 Aligned_cols=79 Identities=10% Similarity=0.125 Sum_probs=50.3
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc-----cc--c
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL-----AR--G 186 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~-----~~--G 186 (231)
.++||.+++++-+.++++.+........ ......+..++|+.... ...+.+..+..+|+|+|.-. .. .
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~--~~~~~~~~~~~gg~~~~---~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~ 170 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNY--GLKKYACVSLVGGTDFR---AAMNKMNKLRPNIVIATPGRLIDVLEKYSN 170 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCG--GGTTSCEEEECTTSCHH---HHHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcc--cccceEEEEEECCccHH---HHHHHHhcCCCCEEEECHHHHHHHHHhccc
Confidence 4899999999999999999887521100 00134567777776543 34455656678899999531 11 2
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
..+..+.+||.
T Consensus 171 ~~~~~~~~lVi 181 (579)
T 3sqw_A 171 KFFRFVDYKVL 181 (579)
T ss_dssp HHCTTCCEEEE
T ss_pred cccccCCEEEE
Confidence 34556666554
No 139
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=64.85 E-value=10 Score=35.75 Aligned_cols=48 Identities=13% Similarity=0.003 Sum_probs=39.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
.+.+++|.++++.-+.+.++.+.+.+ ..+..++|+.+ ..+..+|+|+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~----------~~VglltGd~~-----------~~~~~~IlV~T 273 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEF----------GDVGLMTGDIT-----------INPDAGCLVMT 273 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHT----------SSEEEECSSCB-----------CCCSCSEEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHh----------CCccEEeCccc-----------cCCCCCEEEeC
Confidence 56789999999999999999998872 36777888876 23567888888
No 140
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=64.23 E-value=6.6 Score=36.22 Aligned_cols=75 Identities=8% Similarity=0.126 Sum_probs=46.7
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCc-----cccc-
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDN-----LARG- 186 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~-----~~~G- 186 (231)
+.++||.++++..+.+.+..++...+. .++.+..+||+.+...+...+. +..+|+|+|.- +..+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~------~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~ 365 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFER------QGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGT 365 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHT------TTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcc------cCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCc
Confidence 678999999999999998888876321 1578999999886554322221 13679999843 1122
Q ss_pred c-CcCCCcEEEE
Q psy9509 187 I-DVENIDVVIN 197 (231)
Q Consensus 187 i-di~~v~~vi~ 197 (231)
+ .+..++++|.
T Consensus 366 ~~~l~~~~liVi 377 (936)
T 4a2w_A 366 LTSLSIFTLMIF 377 (936)
T ss_dssp CCCGGGCSEEEE
T ss_pred cccccCCCEEEE
Confidence 2 4455666654
No 141
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.00 E-value=5 Score=30.08 Aligned_cols=92 Identities=21% Similarity=0.247 Sum_probs=54.3
Q ss_pred CCChHHH-HHHHHHhc-----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 97 TNLKPLV-LYQLIRKH-----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~-----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
...|-.+ +..++... .+.++||.+++++-+.+.++.+++... ..+..+..++|+..... ......
T Consensus 76 GsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~ 146 (245)
T 3dkp_A 76 GSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE------GTGFRIHMIHKAAVAAK---KFGPKS 146 (245)
T ss_dssp TSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTT------TSCCCEECCCHHHHHHT---TTSTTS
T ss_pred CCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhc------ccCceEEEEecCccHHH---Hhhhhh
Confidence 3556543 44444322 345799999999999999999987622 11455656655432111 111222
Q ss_pred cCCccEEEEcCc-----ccc---ccCcCCCcEEEE
Q psy9509 171 RRKIDLVVASDN-----LAR---GIDVENIDVVIN 197 (231)
Q Consensus 171 ~~~~~vlv~T~~-----~~~---Gidi~~v~~vi~ 197 (231)
.+..+|+|+|.- +.. .+++..+.++|.
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 456789999942 112 467778887664
No 142
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=62.66 E-value=9.3 Score=24.79 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... |+....+.|++.
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~----------G~~~~~l~GG~~ 91 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHEL----------GYTPYYLEGNVY 91 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT----------TCCCEEEESCGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHC----------CCCEEEecCCHH
Confidence 4578999999998899999999886 554467778764
No 143
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=62.53 E-value=6.5 Score=26.68 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=30.5
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|+.. ++. +..+.|++.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~----------G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDM----------GLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHH----------TCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHc----------CCCCeEEecCCHH
Confidence 4568999999988888999999887 664 888888764
No 144
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=61.89 E-value=6.6 Score=26.80 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
...+++|||.+-..+...+..|... |+ .+..+.|++.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~----------G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREY----------GFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHH----------TCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHc----------CCcceEEEcCcHH
Confidence 4578999999988899999999887 76 4888888864
No 145
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=61.41 E-value=8.2 Score=26.62 Aligned_cols=37 Identities=8% Similarity=0.106 Sum_probs=29.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
...+++|||.+-..+..++..|... |+ .+..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~----------G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEA----------GITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHT----------TCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHc----------CCcceEEEcCChh
Confidence 4568999999988888999999887 66 4888888874
No 146
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=61.32 E-value=9.1 Score=32.70 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=50.1
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCcc-----cc--c
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNL-----AR--G 186 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~-----~~--G 186 (231)
.++||.+++++-+.++++.++....... ......+..++|+..... ..+.+..+..+|+|+|.-. .. .
T Consensus 147 ~~~lil~Ptr~La~Q~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~ 221 (563)
T 3i5x_A 147 VKAVIVAPTRDLALQIEAEVKKIHDMNY--GLKKYACVSLVGGTDFRA---AMNKMNKLRPNIVIATPGRLIDVLEKYSN 221 (563)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCG--GGTTSCEEEECTTSCHHH---HHHHHHHHCCSEEEECHHHHHHHHHHHHH
T ss_pred eeEEEEcCcHHHHHHHHHHHHHHHhhcc--ccCceeEEEEECCcCHHH---HHHHHhcCCCCEEEECcHHHHHHHHhccc
Confidence 4799999999999999999887521100 001345677777766433 4455556678999999632 11 2
Q ss_pred cCcCCCcEEEE
Q psy9509 187 IDVENIDVVIN 197 (231)
Q Consensus 187 idi~~v~~vi~ 197 (231)
..+..+.++|.
T Consensus 222 ~~~~~~~~lVi 232 (563)
T 3i5x_A 222 KFFRFVDYKVL 232 (563)
T ss_dssp HHCTTCCEEEE
T ss_pred cccccceEEEE
Confidence 34556666554
No 147
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=60.68 E-value=6.5 Score=27.10 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=30.0
Q ss_pred CCCcEEEEEcch--HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTA--QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~--~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
...++++||.+- ..+..++..|... |+.+..+.|++.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~----------G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQL----------GFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHT----------TCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHC----------CCeEEEeCCcHH
Confidence 356789999987 5788899999887 778888888864
No 148
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=57.61 E-value=35 Score=21.94 Aligned_cols=57 Identities=9% Similarity=0.072 Sum_probs=35.4
Q ss_pred CCCcEEEEEc------chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 112 AMQGVLCFVN------TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 112 ~~~~~iIF~~------s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
...+++||.. .+.-|.++.+.|.+. ++....+.=...+..+....+......++.++
T Consensus 16 ~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~----------gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~if 78 (109)
T 3ipz_A 16 NSEKVVLFMKGTRDFPMCGFSNTVVQILKNL----------NVPFEDVNILENEMLRQGLKEYSNWPTFPQLY 78 (109)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT----------TCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEE
T ss_pred ccCCEEEEEecCCCCCCChhHHHHHHHHHHc----------CCCcEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 5568999998 488899999999887 55555554333444444443333333444443
No 149
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=56.75 E-value=8 Score=26.24 Aligned_cols=37 Identities=0% Similarity=0.080 Sum_probs=29.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... |+. +..+.|++.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~----------G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSH----------GYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTT----------TCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHc----------CCCCeEEeCCcHH
Confidence 4568999999988899999999886 664 777888763
No 150
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=54.75 E-value=9.6 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
...++++||.+-..+..++..|... |+. +..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~----------G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSA----------GFEHVSELKGGLA 92 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHT----------TCCSEEECTTHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHc----------CCCCEEEecCHHH
Confidence 4567999999988899999999887 664 777777753
No 151
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=52.37 E-value=61 Score=25.59 Aligned_cols=87 Identities=10% Similarity=0.186 Sum_probs=53.0
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-.. +..++... .+.++||.++++.-+.+.++.+++... ..+..+...+++..... ..
T Consensus 54 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------~~ 119 (395)
T 3pey_A 54 GTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGK------FTKITSQLIVPDSFEKN--------KQ 119 (395)
T ss_dssp TSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT------TSCCCEEEESTTSSCTT--------SC
T ss_pred CCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhc------ccCeeEEEEecCchhhh--------cc
Confidence 3556543 33344332 456899999999999999998887521 12455666666543211 12
Q ss_pred CCccEEEEcCcc------ccccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------ARGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. ....++..+++||.
T Consensus 120 ~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIi 151 (395)
T 3pey_A 120 INAQVIVGTPGTVLDLMRRKLMQLQKIKIFVL 151 (395)
T ss_dssp BCCSEEEECHHHHHHHHHTTCBCCTTCCEEEE
T ss_pred CCCCEEEEcHHHHHHHHHcCCcccccCCEEEE
Confidence 356799998532 23355667777654
No 152
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=52.31 E-value=13 Score=25.11 Aligned_cols=36 Identities=6% Similarity=-0.013 Sum_probs=29.5
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
..++++||.+-..+...+..|... ++. +..+.|++.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~----------G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALN----------GFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHH----------TCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHc----------CCcceEEecCCcc
Confidence 468999999988888899999887 664 777888874
No 153
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=51.93 E-value=46 Score=21.55 Aligned_cols=57 Identities=7% Similarity=0.031 Sum_probs=35.0
Q ss_pred CCCcEEEEE------cchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 112 AMQGVLCFV------NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 112 ~~~~~iIF~------~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
...+++||. +++.-|..+.+.|.+. ++....+.=..++..+....+.-....++.++
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~----------gi~y~~~di~~d~~~~~~l~~~~g~~tvP~if 76 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKH----------NIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHT----------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHc----------CCCeEEEECcCCHHHHHHHHHHHCCCCCCEEE
Confidence 556899999 5788899999999887 55555554334444444443332223444443
No 154
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=51.23 E-value=19 Score=27.85 Aligned_cols=42 Identities=2% Similarity=0.118 Sum_probs=33.5
Q ss_pred HHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 107 ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
.+......++++||.+-..+...+..|... |+ .+..+.|++.
T Consensus 175 ~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~----------Gf~nV~~L~GGi~ 217 (265)
T 4f67_A 175 NLIDKKDKKIAMFCTGGIRCEKTTAYMKEL----------GFEHVYQLHDGIL 217 (265)
T ss_dssp HTGGGTTSCEEEECSSSHHHHHHHHHHHHH----------TCSSEEEETTHHH
T ss_pred hhhhCCCCeEEEEeCCChHHHHHHHHHHHc----------CCCCEEEecCHHH
Confidence 333346678999999999999999999887 66 5788888864
No 155
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=49.90 E-value=30 Score=30.58 Aligned_cols=72 Identities=10% Similarity=0.093 Sum_probs=48.7
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC-----ccccc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD-----NLARG 186 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G 186 (231)
.+.++++.++++.-+.+.++.++.... .+..+..++|+....++ ..+..+|+|+|+ .+..+
T Consensus 67 ~~~~~l~i~P~r~La~q~~~~~~~~~~-------~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe~l~~~l~~~ 132 (702)
T 2p6r_A 67 KGGKSLYVVPLRALAGEKYESFKKWEK-------IGLRIGISTGDYESRDE-------HLGDCDIIVTTSEKADSLIRNR 132 (702)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTT-------TTCCEEEECSSCBCCSS-------CSTTCSEEEEEHHHHHHHHHTT
T ss_pred hCCcEEEEeCcHHHHHHHHHHHHHHHh-------cCCEEEEEeCCCCcchh-------hccCCCEEEECHHHHHHHHHcC
Confidence 467999999999999999999854311 15778889997764432 124678999995 22223
Q ss_pred cC-cCCCcEEEE
Q psy9509 187 ID-VENIDVVIN 197 (231)
Q Consensus 187 id-i~~v~~vi~ 197 (231)
.. +..+.+||.
T Consensus 133 ~~~l~~~~~vIi 144 (702)
T 2p6r_A 133 ASWIKAVSCLVV 144 (702)
T ss_dssp CSGGGGCCEEEE
T ss_pred hhHHhhcCEEEE
Confidence 22 556677664
No 156
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=49.24 E-value=58 Score=30.31 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=31.7
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
.+.++||.++++.-+.+.++.+++.++ +..+..++|+.+
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~--------~~~v~~l~G~~~ 119 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFD--------DVNIGLITGDVQ 119 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC----------CCEEEECSSCE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcC--------CCeEEEEeCCCc
Confidence 567899999999999999999988643 567888998764
No 157
>3gr1_A Protein PRGH; type III secretion system, inner membrane protein, cell membrane, membrane, transmembrane, virulence; 2.80A {Salmonella typhimurium}
Probab=46.75 E-value=88 Score=23.48 Aligned_cols=63 Identities=10% Similarity=0.016 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhc---------CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 100 KPLVLYQLIRKH---------AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 100 k~~~l~~ll~~~---------~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
++..|..+|... ..+.+.|++++..+++-..+.|.+... ...+.++ ..+.++.++.+.+.
T Consensus 4 ~v~~L~~lL~g~~~p~~il~grd~~~yVla~~qrd~~W~rq~L~k~~~--------~~~~~V~---~~~~~~~~i~~~l~ 72 (227)
T 3gr1_A 4 MAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDY--------DKNARVI---NENEENKRISIWLD 72 (227)
T ss_dssp CSHHHHHHTCSCSCSCEEEECTTSCEEEECSSHHHHHHHHHHHHHTTC--------TTTEEEE---CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEeCCCCcEEEEEccccHHHHHHHHHHhcCC--------cCCeEEE---ehHHHHHHHHHHHH
Confidence 444555555433 235799999999999999888877611 2334444 46667777777776
Q ss_pred cCC
Q psy9509 171 RRK 173 (231)
Q Consensus 171 ~~~ 173 (231)
.+-
T Consensus 73 ~~~ 75 (227)
T 3gr1_A 73 TYY 75 (227)
T ss_dssp HHC
T ss_pred hcC
Confidence 643
No 158
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=45.95 E-value=42 Score=23.33 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhc--CCCcEEEEEcchHHHHHHHHHHhh
Q psy9509 100 KPLVLYQLIRKH--AMQGVLCFVNTAQGAHRLARLLHH 135 (231)
Q Consensus 100 k~~~l~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~ 135 (231)
+..+...++.+. .+.+++|.|.+.+.++.+-+.|=.
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~ 61 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWA 61 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhC
Confidence 556666777654 688999999999999998888743
No 159
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=45.10 E-value=56 Score=20.58 Aligned_cols=57 Identities=7% Similarity=0.004 Sum_probs=36.3
Q ss_pred CCCcEEEEE------cchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 112 AMQGVLCFV------NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 112 ~~~~~iIF~------~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
...+++||. +.+..|..+...|.+. ++.+..+.-...+..+....+.+....++.++
T Consensus 15 ~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~----------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~ 77 (105)
T 2yan_A 15 NKASVMLFMKGNKQEAKCGFSKQILEILNST----------GVEYETFDILEDEEVRQGLKAYSNWPTYPQLY 77 (105)
T ss_dssp TSSSEEEEESBCSSSBCTTHHHHHHHHHHHH----------TCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred ccCCEEEEEecCCCCCCCccHHHHHHHHHHC----------CCCeEEEECCCCHHHHHHHHHHHCCCCCCeEE
Confidence 345799998 5678899999999887 55655555555555555554444334454443
No 160
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=44.88 E-value=37 Score=25.97 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=34.2
Q ss_pred HHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 103 VLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 103 ~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
.+..++... ..+++++||.+-..+...+..|... |+ .+..+.|++.
T Consensus 217 ~l~~~~~~~~~~~~~~ivv~C~~G~rs~~a~~~L~~~----------G~~~v~~~~GG~~ 266 (280)
T 1urh_A 217 ELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATL----------DVPNVKLYDGAWS 266 (280)
T ss_dssp HHHHHHHTTTCCSSSCEEEECCSSSTHHHHHHHHHHT----------TCSSCEEECCSCC
T ss_pred HHHHHHHHcCCCCCCCEEEECChHHHHHHHHHHHHHc----------CCCCceeeCChHH
Confidence 444444432 4578999999988888889999876 66 4788888876
No 161
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=44.61 E-value=21 Score=28.74 Aligned_cols=89 Identities=13% Similarity=0.212 Sum_probs=52.2
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-.. +..++... .+.++||.+++++-+.+.++.+++.... ..+..+....++..... ...
T Consensus 74 GsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~~ 141 (412)
T 3fht_A 74 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-----YPELKLAYAVRGNKLER-------GQK 141 (412)
T ss_dssp TSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT-----STTCCEEEECTTCCCCT-------TCC
T ss_pred CchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhh-----cccceEEEeecCcchhh-------hhc
Confidence 3556543 44444433 3448999999999999998888775211 01455666666543221 113
Q ss_pred CCccEEEEcCcc------c-cccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------A-RGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~-~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. . ..+++..+.++|.
T Consensus 142 ~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 142 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp CCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred CCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 456799999531 1 2355566776654
No 162
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=44.44 E-value=57 Score=23.89 Aligned_cols=65 Identities=11% Similarity=0.188 Sum_probs=42.2
Q ss_pred HhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHH----HHHHHHHHHHcCCccEEEEcCcc
Q psy9509 109 RKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD----QRNKIIQEFRRRKIDLVVASDNL 183 (231)
Q Consensus 109 ~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~----~r~~~~~~f~~~~~~vlv~T~~~ 183 (231)
++..-+.++|...+-+.+..+++.+... ++-+..+|.+.... --.+..++++....+|+-+|-++
T Consensus 40 ~e~~Ik~iVVAS~sG~TA~k~~e~~~~i----------~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~tH~l 108 (201)
T 1vp8_A 40 KELGIKHLVVASSYGDTAMKALEMAEGL----------EVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQSHIL 108 (201)
T ss_dssp HHHTCCEEEEECSSSHHHHHHHHHCTTC----------EEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEECCCTT
T ss_pred HHcCCCEEEEEeCCChHHHHHHHHhcCC----------eEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEEeccc
Confidence 3445678888888888888888876221 34444555443211 12566677888888899888663
No 163
>3gr0_A Protein PRGH; type III secretion system, inner membrane protein, cell MEMB membrane, transmembrane, virulence, membrane protein; 2.30A {Salmonella typhimurium} PDB: 2y9j_A
Probab=43.89 E-value=87 Score=22.92 Aligned_cols=50 Identities=8% Similarity=0.001 Sum_probs=33.5
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
.+.+.|++++..+++-..+.|.+... ...+.++. .+.++.++.+.+..+-
T Consensus 26 D~~iyVla~~qrd~~W~rQ~L~k~~~--------~e~~~Vi~---~~~e~~~i~~~L~~~~ 75 (197)
T 3gr0_A 26 DKMLYVAAQNERDTLWARQVLARGDY--------DKNARVIN---ENEENKRISIWLDTYY 75 (197)
T ss_dssp TSCEEEECSSHHHHHHHHHHHHHHTC--------TTTEEEEC---HHHHHHHHHHHHHHHS
T ss_pred CCcEEEEEccccHHHHHHHHHHhcCC--------CCCcEEee---hHHHHHHHHHHHHhcC
Confidence 35699999999999999888877611 12333332 5566677777666643
No 164
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=43.74 E-value=29 Score=32.34 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=37.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
.+.++|+.++++.-+.+.++.+.+.+ ..+..++|+.+.. ...+|+|+|.
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~----------~~vglltGd~~~~-----------~~~~IvV~Tp 176 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEF----------GDVGLMTGDITIN-----------PDAGCLVMTT 176 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHH----------SCEEEECSSCEEC-----------TTCSEEEEEH
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHh----------CCEEEEeCCCccC-----------CCCCEEEEcH
Confidence 56799999999999999999998863 2567788876532 2456787775
No 165
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=43.18 E-value=50 Score=25.11 Aligned_cols=71 Identities=15% Similarity=0.048 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCc
Q psy9509 98 NLKPLVLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKI 174 (231)
Q Consensus 98 ~~k~~~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~ 174 (231)
..|-.....++.. ....++||.+++++-+++.++.+++... .....+..++++..... -..+..
T Consensus 139 sGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~------~~~~~~~~~~~~~~~~~-------~~~~~~ 205 (282)
T 1rif_A 139 AGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRL------FSHAMIKKIGGGASKDD-------KYKNDA 205 (282)
T ss_dssp SCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTS------CCGGGEEECSTTCSSTT-------CCCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcc------cccceEEEEeCCCcchh-------hhccCC
Confidence 4565544333332 2345899999999999999998877521 11345677777654321 112467
Q ss_pred cEEEEcC
Q psy9509 175 DLVVASD 181 (231)
Q Consensus 175 ~vlv~T~ 181 (231)
+|+|+|.
T Consensus 206 ~I~v~T~ 212 (282)
T 1rif_A 206 PVVVGTW 212 (282)
T ss_dssp SEEEECH
T ss_pred cEEEEch
Confidence 7999985
No 166
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=42.76 E-value=36 Score=26.04 Aligned_cols=47 Identities=9% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHHHHHHh--c-CCCcEEEEEcchHHHHHHHHHHh-hhccccccCCCCcc-cEEEEcCCCC
Q psy9509 102 LVLYQLIRK--H-AMQGVLCFVNTAQGAHRLARLLH-HIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 102 ~~l~~ll~~--~-~~~~~iIF~~s~~~~~~l~~~l~-~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
+.+.+.+.. . ...++++||.+-..+...+..|. .. |+ .+..+.|++.
T Consensus 219 ~~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~----------G~~~v~~l~GG~~ 270 (285)
T 1uar_A 219 EELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLL----------GYPHVKNYDGSWT 270 (285)
T ss_dssp HHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTS----------CCSCEEEESSHHH
T ss_pred HHHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHc----------CCCCcceeCchHH
Confidence 445555655 2 45689999999888888888887 65 66 5778888753
No 167
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=41.71 E-value=78 Score=27.97 Aligned_cols=78 Identities=9% Similarity=0.003 Sum_probs=50.2
Q ss_pred CChHHHHH-HHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccE
Q psy9509 98 NLKPLVLY-QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176 (231)
Q Consensus 98 ~~k~~~l~-~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~v 176 (231)
..|-..+. .++. .+.+++|.+++++.+.++++.+.+.. +..+....|+.. ..+..+|
T Consensus 243 SGKT~a~~l~ll~--~g~~vLVl~PTReLA~Qia~~l~~~~---------g~~vg~~vG~~~-----------~~~~~~I 300 (666)
T 3o8b_A 243 SGKSTKVPAAYAA--QGYKVLVLNPSVAATLGFGAYMSKAH---------GIDPNIRTGVRT-----------ITTGAPV 300 (666)
T ss_dssp SCTTTHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH---------SCCCEEECSSCE-----------ECCCCSE
T ss_pred hhHHHHHHHHHHH--CCCeEEEEcchHHHHHHHHHHHHHHh---------CCCeeEEECcEe-----------ccCCCCE
Confidence 44543333 3333 35589999999999999998887653 334555566543 3567789
Q ss_pred EEEcCc--c-ccccCcCCCcEEEE
Q psy9509 177 VVASDN--L-ARGIDVENIDVVIN 197 (231)
Q Consensus 177 lv~T~~--~-~~Gidi~~v~~vi~ 197 (231)
+|+|.- + ...++...+.++|.
T Consensus 301 lV~TPGrLl~~~~l~l~~l~~lVl 324 (666)
T 3o8b_A 301 TYSTYGKFLADGGCSGGAYDIIIC 324 (666)
T ss_dssp EEEEHHHHHHTTSCCTTSCSEEEE
T ss_pred EEECcHHHHhCCCcccCcccEEEE
Confidence 999863 2 23455566777765
No 168
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=40.68 E-value=1.2e+02 Score=23.03 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=42.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH-HHHHHHHH--cCCccEEEEc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR-NKIIQEFR--RRKIDLVVAS 180 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r-~~~~~~f~--~~~~~vlv~T 180 (231)
.+.++++.-.+.+.++++++.++.. +..+..+..+.+..+. .+.+++.. -|.+++||..
T Consensus 30 ~Ga~Vv~~~~~~~~~~~~~~~i~~~----------g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNN 91 (254)
T 4fn4_A 30 NDSIVVAVELLEDRLNQIVQELRGM----------GKEVLGVKADVSKKKDVEEFVRRTFETYSRIDVLCNN 91 (254)
T ss_dssp TTCEEEEEESCHHHHHHHHHHHHHT----------TCCEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 4567888777888889999988776 6678888898876553 22333332 2899999974
No 169
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=38.36 E-value=79 Score=20.40 Aligned_cols=102 Identities=13% Similarity=0.102 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc----CCcc
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR----RKID 175 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~----~~~~ 175 (231)
-...+...|....+..++..+.+..++.. .+... ...+..+.-.++...-.+.++.++. ....
T Consensus 20 ~~~~l~~~L~~~~~~~~v~~~~~~~~a~~---~l~~~----------~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 86 (143)
T 3cnb_A 20 FADMLTQFLENLFPYAKIKIAYNPFDAGD---LLHTV----------KPDVVMLDLMMVGMDGFSICHRIKSTPATANII 86 (143)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECSHHHHHH---HHHHT----------CCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSE
T ss_pred HHHHHHHHHHhccCccEEEEECCHHHHHH---HHHhc----------CCCEEEEecccCCCcHHHHHHHHHhCccccCCc
Confidence 34456666665345554566666555443 33333 4556666665554445566777765 3456
Q ss_pred EEEEcCcccc-----ccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 176 LVVASDNLAR-----GIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 176 vlv~T~~~~~-----Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
|++.|+.... .+.. ++..+ +.-|.+...+.+++.++.+.
T Consensus 87 ii~~s~~~~~~~~~~~~~~-g~~~~--l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 87 VIAMTGALTDDNVSRIVAL-GAETC--FGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEEESSCCHHHHHHHHHT-TCSEE--EESSCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCCHHHHHHHHhc-CCcEE--EeCCCCHHHHHHHHHHHHHh
Confidence 7766644221 1222 12222 24588899998888776554
No 170
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=35.70 E-value=24 Score=29.29 Aligned_cols=89 Identities=13% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|... +..++... ...++||.+++++-+.+.++.++..... ..+..+....++..... ...
T Consensus 141 GsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-------~~~ 208 (479)
T 3fmp_B 141 GTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKF-----YPELKLAYAVRGNKLER-------GQK 208 (479)
T ss_dssp SSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTT-----STTCCEEEESTTCCCCT-------TCC
T ss_pred CCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhh-----CCCceEEEEeCCccccc-------ccc
Confidence 3557554 44555443 2337999999999999998887765210 01344555555432111 112
Q ss_pred CCccEEEEcCccc-------cccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNLA-------RGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~~-------~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-.- ..+++..+.++|.
T Consensus 209 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 241 (479)
T 3fmp_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 241 (479)
T ss_dssp CCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEE
T ss_pred CCCCEEEECchHHHHHHHhcCCcCcccCCEEEE
Confidence 3457999995321 2566677777664
No 171
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=35.59 E-value=26 Score=24.30 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=27.6
Q ss_pred CCcEEEEEcchH---------HHHHHHHHHhhhccccccCCCCcccEEEEcCCC
Q psy9509 113 MQGVLCFVNTAQ---------GAHRLARLLHHIDNVATKGAGTKMNIAEVYSDL 157 (231)
Q Consensus 113 ~~~~iIF~~s~~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~ 157 (231)
..++++||.+-. .+..++..|... |+.+..+.|++
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~----------G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKRE----------GKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTT----------TCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhC----------CCcEEEeCCcH
Confidence 568999999873 477788888776 77888888875
No 172
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=35.44 E-value=1.2e+02 Score=23.37 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=30.3
Q ss_pred chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 122 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+...++.+.+.|+.. |+.+ ..+.+++..+-.+.+++|..
T Consensus 47 t~~D~~~L~~~f~~L----------GF~V-~~~~dlt~~em~~~l~~~~~ 85 (271)
T 3h11_B 47 THLDAGALTTTFEEL----------HFEI-KPHDDCTVEQIYEILKIYQL 85 (271)
T ss_dssp HHHHHHHHHHHHHHT----------TCEE-EEEESCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC----------CCEE-EEEeCCCHHHHHHHHHHHHH
Confidence 446788888888887 7775 45667888888888998865
No 173
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=34.40 E-value=35 Score=30.25 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=41.3
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
+.++++.++++.-+.+.++.++.... .+..+..++|+.....+. .+..+|+|+|+
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~-------~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tp 122 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEK-------IGLRVAMATGDYDSKDEW-------LGKYDIIIATA 122 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGG-------GTCCEEEECSCSSCCCGG-------GGGCSEEEECH
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHh-------cCCEEEEecCCCCccccc-------cCCCCEEEECH
Confidence 67899999999999999999864311 157888999987654331 24678999996
No 174
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=34.22 E-value=27 Score=25.89 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=29.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
..+++++||.+-..+...+..|+.. +..+..+.|++.
T Consensus 183 ~~~~iv~~C~~G~rs~~a~~~L~~~----------G~~v~~~~Gg~~ 219 (230)
T 2eg4_A 183 PGQEVGVYCHSGARSAVAFFVLRSL----------GVRARNYLGSMH 219 (230)
T ss_dssp TTCEEEEECSSSHHHHHHHHHHHHT----------TCEEEECSSHHH
T ss_pred CCCCEEEEcCChHHHHHHHHHHHHc----------CCCcEEecCcHH
Confidence 4568999999999999999999886 555777778754
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=33.72 E-value=69 Score=27.04 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc
Q psy9509 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS 180 (231)
Q Consensus 101 ~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T 180 (231)
...|..+++. .+.+++|.+.|...++++.+.|.+. ++......... .+..| .+.++.
T Consensus 371 ~~~L~~~~~~-~~~rVvi~a~s~~r~erL~~~L~~~----------~i~~~~~~~~~----------~~~~g--~v~i~~ 427 (483)
T 3hjh_A 371 LDALRKFLET-FDGPVVFSVESEGRREALGELLARI----------KIAPQRIMRLD----------EASDR--GRYLMI 427 (483)
T ss_dssp THHHHHHHHH-CCSCEEEEESCSSTTTTTHHHHGGG----------TCCCEECSCGG----------GCCTT--CEEEEE
T ss_pred HHHHHHHHHh-CCCeEEEEeCChHHHHHHHHHHHHc----------CCCceecCchh----------hcCCC--cEEEEE
Confidence 3455555543 3568999999999999999999886 54433322210 11233 355666
Q ss_pred CccccccCcCCCcEEEEe
Q psy9509 181 DNLARGIDVENIDVVINY 198 (231)
Q Consensus 181 ~~~~~Gidi~~v~~vi~~ 198 (231)
..+..|.-+|+...++..
T Consensus 428 g~L~~GF~~p~~klaVIT 445 (483)
T 3hjh_A 428 GAAEHGFVDTVRNLALIC 445 (483)
T ss_dssp SCCCSCEEETTTTEEEEE
T ss_pred cccccCcccCCCCEEEEE
Confidence 778999999988887763
No 176
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=33.49 E-value=33 Score=26.07 Aligned_cols=36 Identities=3% Similarity=-0.021 Sum_probs=28.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDL 157 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~ 157 (231)
...++++||.+-..+..++..|... |+. +..+.|++
T Consensus 222 ~~~~ivvyC~~G~rs~~a~~~L~~~----------G~~~v~~l~GG~ 258 (271)
T 1e0c_A 222 PDKEIVTHCQTHHRSGLTYLIAKAL----------GYPRVKGYAGSW 258 (271)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHHT----------TCSCEEECSSHH
T ss_pred CCCCEEEECCchHHHHHHHHHHHHc----------CCCCceeeCCcH
Confidence 4578999999988888888888876 664 77777765
No 177
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=32.16 E-value=1.2e+02 Score=20.49 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=34.5
Q ss_pred CcEEEEEc------chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 114 QGVLCFVN------TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 114 ~~~iIF~~------s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
.+++||+. .+.-|.++.+.|.+. ++....+.=...+..+....+......++.++
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~----------gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~Vf 95 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAAC----------GERFAYVDILQNPDIRAELPKYANWPTFPQLW 95 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTT----------CSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEE
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHc----------CCceEEEECCCCHHHHHHHHHHHCCCCcCEEE
Confidence 47889987 678899999999876 56655555444555444444433333444444
No 178
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A
Probab=32.07 E-value=68 Score=26.28 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=32.4
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCC
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDL 157 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~ 157 (231)
+.|.+.+... ...++++||.+-..+..++..|... |+ .+..+.|++
T Consensus 189 ~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~----------G~~~v~~l~Gg~ 238 (423)
T 2wlr_A 189 EQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYA----------GVKDVRLLDGGW 238 (423)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHH----------TCSCEEEETTTH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHc----------CCCCeEEECCCH
Confidence 4455555432 4568999999988888888888876 55 366666654
No 179
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=31.96 E-value=70 Score=26.58 Aligned_cols=52 Identities=10% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~ 181 (231)
...++||.|++ ..+..-.+.+++..+ +..+..+||+... ...+..+|+|+|.
T Consensus 85 ~~~~~LIv~P~-~l~~qw~~e~~~~~~--------~~~v~~~~g~~~~---------~~~~~~~ivi~t~ 136 (500)
T 1z63_A 85 ELTPSLVICPL-SVLKNWEEELSKFAP--------HLRFAVFHEDRSK---------IKLEDYDIILTTY 136 (500)
T ss_dssp CCSSEEEEECS-TTHHHHHHHHHHHCT--------TSCEEECSSSTTS---------CCGGGSSEEEEEH
T ss_pred CCCCEEEEccH-HHHHHHHHHHHHHCC--------CceEEEEecCchh---------ccccCCcEEEeeH
Confidence 45789999995 466777777766532 4567777876531 1123456777763
No 180
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=31.94 E-value=40 Score=26.09 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 113 MQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 113 ~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
.+-+|||.|+...++.+.+.|+.. |+.+. .+.+++..+-.+.+++|..
T Consensus 43 rG~~LIinn~~~D~~~L~~~f~~L----------gF~V~-~~~dlt~~em~~~l~~~~~ 90 (272)
T 3h11_A 43 LGICLIIDCIGNETELLRDTFTSL----------GYEVQ-KFLHLSMHGISQILGQFAC 90 (272)
T ss_dssp SEEEEEEESSCCCCSHHHHHHHHH----------TEEEE-EEESCBHHHHHHHHHHHHT
T ss_pred ceEEEEECCchHHHHHHHHHHHHC----------CCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 356899999999999999999988 77764 4667899998999999975
No 181
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}
Probab=31.72 E-value=49 Score=21.48 Aligned_cols=41 Identities=7% Similarity=0.242 Sum_probs=27.2
Q ss_pred cEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 115 GVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 115 ~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
++++||.+-..+...+..|....... ..+...+..+.|++.
T Consensus 74 ~ivv~C~~G~rs~~a~~~L~~~gg~~---~~G~~~v~~l~GG~~ 114 (127)
T 3i2v_A 74 PIYVICKLGNDSQKAVKILQSLSAAQ---ELDPLTVRDVVGGLM 114 (127)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTT---SSSCEEEEEETTHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHhhccc---cCCCceEEEecCCHH
Confidence 89999999888888888887651000 001345777888764
No 182
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=31.61 E-value=1e+02 Score=19.55 Aligned_cols=56 Identities=7% Similarity=0.007 Sum_probs=35.1
Q ss_pred CCcEEEEEc------chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEE
Q psy9509 113 MQGVLCFVN------TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178 (231)
Q Consensus 113 ~~~~iIF~~------s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv 178 (231)
..+++||.. .+..|..+...|... ++....+.=...+..+....+......+++++
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~----------~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~if 75 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNST----------GVEYETFDILEDEEVRQGLKTFSNWPTYPQLY 75 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHT----------CSCEEEEESSSCHHHHHHHHHHHSCCSSCEEE
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHc----------CCCeEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 356888877 566788888888877 66666666555555555444443333444443
No 183
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=31.48 E-value=1.4e+02 Score=22.52 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=40.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHH-HHHHHHHHHc--CCccEEEEc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRR--RKIDLVVAS 180 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~-r~~~~~~f~~--~~~~vlv~T 180 (231)
.+-++++.-.+.+..++.++.+.+. +..+..+..+.+..+ -.+.+++..+ |.+++||..
T Consensus 32 ~Ga~Vvi~~~~~~~~~~~~~~l~~~----------g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 32 AGARVILNDIRATLLAESVDTLTRK----------GYDAHGVAFDVTDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp TTCEEEECCSCHHHHHHHHHHHHHT----------TCCEEECCCCTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEEeeCCCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 4556777766777788888888765 667888888876654 3344444433 789999974
No 184
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=31.42 E-value=54 Score=28.09 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=10.5
Q ss_pred CCCcEEEEEcchHHHHHHH-HHHhhh
Q psy9509 112 AMQGVLCFVNTAQGAHRLA-RLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~-~~l~~~ 136 (231)
...++||.+++++-+++.+ +.++..
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~ 259 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPF 259 (590)
T ss_dssp SCCCEEEEEC-----------CCTTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 4578889999888888777 555543
No 185
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=31.24 E-value=1.4e+02 Score=21.07 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCcEEEEEcc--------------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 113 MQGVLCFVNT--------------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 113 ~~~~iIF~~s--------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
.+.+|||.|. ...++.+.+.|+.. ++.+ .++.+++..+-.+.+++|..
T Consensus 33 rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~L----------gF~V-~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 33 RGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLL----------GYDV-HVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp SEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHT----------TEEE-EEEESCCHHHHHHHHHHHHT
T ss_pred ceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHC----------CCEE-EEeeCCCHHHHHHHHHHhhh
Confidence 3567888765 23788888888877 7776 55678899998999999976
No 186
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=30.93 E-value=70 Score=24.24 Aligned_cols=45 Identities=7% Similarity=0.110 Sum_probs=32.2
Q ss_pred HHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhh-hccccccCCCCccc-EEEEcCCC
Q psy9509 103 VLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHH-IDNVATKGAGTKMN-IAEVYSDL 157 (231)
Q Consensus 103 ~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~-~~~~~~~~~~~~~~-~~~~h~~~ 157 (231)
.|...+.. ....++++||.+-..+..++..|.+ . |+. +..+.|++
T Consensus 213 ~l~~~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~----------G~~~v~~l~GG~ 262 (277)
T 3aay_A 213 ELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLRELL----------GHQNVKNYDGSW 262 (277)
T ss_dssp HHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTS----------CCSCEEEESSHH
T ss_pred HHHHHHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHc----------CCCcceeeCchH
Confidence 44555543 2457899999998888888888875 5 554 77888875
No 187
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=30.50 E-value=1.5e+02 Score=23.19 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=38.9
Q ss_pred CcEEEEEcc-----------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 114 QGVLCFVNT-----------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 114 ~~~iIF~~s-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+-+|||.|. ..+++.+.+.|+.. ++.+. .+.+++..+-.+.+++|..
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~L----------GF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL----------GYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHT----------TCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHC----------CCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 358999998 56799999999987 88764 5668999999999999964
No 188
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=29.42 E-value=1.2e+02 Score=19.82 Aligned_cols=25 Identities=16% Similarity=0.095 Sum_probs=20.7
Q ss_pred CCCcEEEEEcc------hHHHHHHHHHHhhh
Q psy9509 112 AMQGVLCFVNT------AQGAHRLARLLHHI 136 (231)
Q Consensus 112 ~~~~~iIF~~s------~~~~~~l~~~l~~~ 136 (231)
...+++||..+ +.-|..+.+.|.+.
T Consensus 14 ~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~ 44 (121)
T 3gx8_A 14 ESAPVVLFMKGTPEFPKCGFSRATIGLLGNQ 44 (121)
T ss_dssp HSCSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred ccCCEEEEEeccCCCCCCccHHHHHHHHHHc
Confidence 34679999984 88899999999887
No 189
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=28.94 E-value=1.5e+02 Score=20.69 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=45.4
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEcCccccccCcCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 191 (231)
....+.|.+.+...+..+.+.|... ++.+..+.++.. ...-.|.|.|--.+.|+.++
T Consensus 60 g~~~iAVL~r~~~~~~~l~~~L~~~----------gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf~- 116 (174)
T 3dmn_A 60 ERDTTAIIGKSLAECEALTKALKAR----------GEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEFD- 116 (174)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTT----------TCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCEE-
T ss_pred CCCcEEEEecCHHHHHHHHHHHHHc----------CCcceeeccccc------------ccCCCeEEEEccccCCcCCC-
Confidence 3567889999999999999999876 666665554331 12245889999999999864
Q ss_pred CcEEEEecC
Q psy9509 192 IDVVINYEA 200 (231)
Q Consensus 192 v~~vi~~~~ 200 (231)
.|+.++.
T Consensus 117 --~V~~~~~ 123 (174)
T 3dmn_A 117 --AVIVWNA 123 (174)
T ss_dssp --EEEEETC
T ss_pred --EEEEecC
Confidence 4555554
No 190
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=28.88 E-value=80 Score=24.75 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=25.0
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchH-HHHHHHHHHhhh
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQ-GAHRLARLLHHI 136 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~-~~~~l~~~l~~~ 136 (231)
..+...+... ...+++|||.+-. .+..++..|+..
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~ 135 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLF 135 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc
Confidence 4455555553 4568999998765 688888888776
No 191
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=28.76 E-value=33 Score=26.26 Aligned_cols=35 Identities=11% Similarity=0.049 Sum_probs=23.9
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHH-HHHHHHHHhhh
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQG-AHRLARLLHHI 136 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~-~~~l~~~l~~~ 136 (231)
..+...+... ...+++|||.+-.. +..++..|+..
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~ 110 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTF 110 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc
Confidence 3444555443 45688999988655 77888888776
No 192
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Probab=28.44 E-value=87 Score=21.37 Aligned_cols=44 Identities=7% Similarity=0.009 Sum_probs=23.4
Q ss_pred HHHHHHhcCCCcEEE-EE-cchHHHHHHH----HHHhhhccccccCCCCcc---cEEEEcCCCC
Q psy9509 104 LYQLIRKHAMQGVLC-FV-NTAQGAHRLA----RLLHHIDNVATKGAGTKM---NIAEVYSDLK 158 (231)
Q Consensus 104 l~~ll~~~~~~~~iI-F~-~s~~~~~~l~----~~l~~~~~~~~~~~~~~~---~~~~~h~~~~ 158 (231)
+...+... ..++|| +| .+-..+...+ ..|... |+ .+..+.|++.
T Consensus 59 l~~~l~~~-~~~~vV~yC~~sg~rs~~aa~~~~~~L~~~----------G~~~~~v~~L~GG~~ 111 (152)
T 2j6p_A 59 LAKTLFEE-KKELAVFHCAQSLVRAPKGANRFALAQKKL----------GYVLPAVYVLRGGWE 111 (152)
T ss_dssp HHHHHHHT-TCCEEEEECSSSSSHHHHHHHHHHHHHHHH----------TCCCSEEEEETTHHH
T ss_pred HHHHhccc-CCCEEEEEcCCCCCccHHHHHHHHHHHHHc----------CCCCCCEEEEcCcHH
Confidence 44444332 334555 48 4544444444 666655 54 5778888864
No 193
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=28.16 E-value=89 Score=20.82 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=31.3
Q ss_pred EcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 120 VNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 120 ~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
|.+++.|.++..+|... ++....+.=++++..|.+..+..
T Consensus 13 c~~kk~c~~aK~lL~~k----------gV~feEidI~~d~~~r~eM~~~~ 52 (121)
T 1u6t_A 13 TAIKKKQQDVLGFLEAN----------KIGFEEKDIAANEENRKWMRENV 52 (121)
T ss_dssp HHHHHHHHHHHHHHHHT----------TCCEEEEECTTCHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHhc
Confidence 33456678999999887 78888887778888888888776
No 194
>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A
Probab=27.84 E-value=62 Score=24.98 Aligned_cols=46 Identities=9% Similarity=-0.047 Sum_probs=32.9
Q ss_pred HHHHHHHh---cCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCccc-EEEEcCCCC
Q psy9509 103 VLYQLIRK---HAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMN-IAEVYSDLK 158 (231)
Q Consensus 103 ~l~~ll~~---~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~~~ 158 (231)
.+...+.. ...+++++||.+-..+...+..|... ++. +..+.|++.
T Consensus 227 ~l~~~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~----------G~~~v~~~~GG~~ 276 (296)
T 1rhs_A 227 ELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLC----------GKPDVAIYDGSWF 276 (296)
T ss_dssp HHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHT----------TCCCCEEESSHHH
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHc----------CCCCceeeCCcHH
Confidence 44444443 24578999999988888888888776 664 778888764
No 195
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=27.73 E-value=1.7e+02 Score=20.88 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=37.2
Q ss_pred CcEEEEEcch-----------HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 114 QGVLCFVNTA-----------QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 114 ~~~iIF~~s~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+.+||+.|.. ..++.+.+.|+.. ++.+. ++.+++..+-.+.+++|..
T Consensus 44 g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~L----------gF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 44 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNL----------GYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHT----------TCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHC----------CCEEE-EecCCCHHHHHHHHHHHHh
Confidence 4578887763 6789999999887 78765 5677899998999999964
No 196
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=27.29 E-value=52 Score=24.93 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=22.9
Q ss_pred HHHHHHHh---cCCCcEEEEEcchH-HHHHHHHHHhhh
Q psy9509 103 VLYQLIRK---HAMQGVLCFVNTAQ-GAHRLARLLHHI 136 (231)
Q Consensus 103 ~l~~ll~~---~~~~~~iIF~~s~~-~~~~l~~~l~~~ 136 (231)
.+...+.. ....+++|||.+-. .+..++..|...
T Consensus 68 ~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~ 105 (271)
T 1e0c_A 68 QLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVI 105 (271)
T ss_dssp HHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHc
Confidence 34444443 24567888998765 778888888776
No 197
>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A
Probab=26.78 E-value=66 Score=24.42 Aligned_cols=45 Identities=7% Similarity=-0.040 Sum_probs=28.1
Q ss_pred HHHHHHHh---cCCCcEEEEEcch-HHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCC
Q psy9509 103 VLYQLIRK---HAMQGVLCFVNTA-QGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDL 157 (231)
Q Consensus 103 ~l~~ll~~---~~~~~~iIF~~s~-~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~ 157 (231)
.+...+.. ....+++|||.+- ..+..++..|... |+ .+..+.|++
T Consensus 64 ~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~----------G~~~v~~l~GG~ 113 (277)
T 3aay_A 64 QFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLY----------GHEKVKLLDGGR 113 (277)
T ss_dssp HHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHT----------TCCSEEEETTHH
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHc----------CCCcEEEecCCH
Confidence 34444444 2456788899874 3567777888775 44 455666653
No 198
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=26.59 E-value=1.4e+02 Score=19.58 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=59.8
Q ss_pred eeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHH
Q psy9509 92 LTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR 170 (231)
Q Consensus 92 ~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~ 170 (231)
+..+.+.. -...+..++........+..+.+..++. +.+... ...+..+.-.++...-...++.++
T Consensus 23 iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al---~~l~~~----------~~dlii~D~~l~~~~g~~~~~~l~ 89 (150)
T 4e7p_A 23 VLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAI---QLLEKE----------SVDIAILDVEMPVKTGLEVLEWIR 89 (150)
T ss_dssp EEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHH---HHHTTS----------CCSEEEECSSCSSSCHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHH---HHhhcc----------CCCEEEEeCCCCCCcHHHHHHHHH
Confidence 34444433 3445556666544334455666655443 344443 456677766665555556666666
Q ss_pred c--CCccEEEEcCccc-----cccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 171 R--RKIDLVVASDNLA-----RGIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 171 ~--~~~~vlv~T~~~~-----~Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
. ....|++.|.... ..+... +..+ +.-|.+...+.+++.++.+.
T Consensus 90 ~~~~~~~ii~ls~~~~~~~~~~~~~~g-~~~~--l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 90 SEKLETKVVVVTTFKRAGYFERAVKAG-VDAY--VLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp HTTCSCEEEEEESCCCHHHHHHHHHTT-CSEE--EETTSCHHHHHHHHHHHHTT
T ss_pred HhCCCCeEEEEeCCCCHHHHHHHHHCC-CcEE--EecCCCHHHHHHHHHHHHcC
Confidence 5 3456776665322 222222 2222 24588899999888877654
No 199
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=26.25 E-value=1.2e+02 Score=27.19 Aligned_cols=61 Identities=7% Similarity=0.021 Sum_probs=37.6
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH--------HcCCccEEEEcC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF--------RRRKIDLVVASD 181 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f--------~~~~~~vlv~T~ 181 (231)
..+++||.|+ ...+..-.+.+.+..+ +..+..+||............-+ ..+..+|+|+|-
T Consensus 285 ~~~~~LIV~P-~sll~qW~~E~~~~~p--------~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy 353 (800)
T 3mwy_W 285 QNGPHIIVVP-LSTMPAWLDTFEKWAP--------DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTY 353 (800)
T ss_dssp CCSCEEEECC-TTTHHHHHHHHHHHST--------TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECT
T ss_pred CCCCEEEEEC-chHHHHHHHHHHHHCC--------CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecH
Confidence 5678999999 5556666666666533 56788888876543332222211 234567888884
No 200
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=26.25 E-value=1.8e+02 Score=20.87 Aligned_cols=87 Identities=10% Similarity=0.140 Sum_probs=55.3
Q ss_pred CcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCCccEEEEc----CccccccCc
Q psy9509 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS----DNLARGIDV 189 (231)
Q Consensus 114 ~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~~~vlv~T----~~~~~Gidi 189 (231)
.+++++++..+..+.+.+...+. +..+..+.+++. +-....++. ....+|+||- ..+..-+++
T Consensus 5 ~~I~~iapy~~l~~~~~~i~~e~----------~~~i~i~~~~l~--~~v~~a~~~-~~~~dVIISRGgta~~lr~~~~i 71 (196)
T 2q5c_A 5 LKIALISQNENLLNLFPKLALEK----------NFIPITKTASLT--RASKIAFGL-QDEVDAIISRGATSDYIKKSVSI 71 (196)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH----------TCEEEEEECCHH--HHHHHHHHH-TTTCSEEEEEHHHHHHHHTTCSS
T ss_pred CcEEEEEccHHHHHHHHHHHhhh----------CCceEEEECCHH--HHHHHHHHh-cCCCeEEEECChHHHHHHHhCCC
Confidence 46777888877777655555544 445666677654 344555556 6778899984 334455555
Q ss_pred CCCcEEEEecCCCCHHHHHHHhcccccCCC
Q psy9509 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGR 219 (231)
Q Consensus 190 ~~v~~vi~~~~p~~~~~~~qr~GR~gR~g~ 219 (231)
|-+ +.+.|..++++.+-++.+.+.
T Consensus 72 PVV------~I~~s~~Dil~al~~a~~~~~ 95 (196)
T 2q5c_A 72 PSI------SIKVTRFDTMRAVYNAKRFGN 95 (196)
T ss_dssp CEE------EECCCHHHHHHHHHHHGGGCS
T ss_pred CEE------EEcCCHhHHHHHHHHHHhhCC
Confidence 522 457778888888877766543
No 201
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=25.57 E-value=1.8e+02 Score=22.85 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.1
Q ss_pred CcEEEEEcch------------HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 114 QGVLCFVNTA------------QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 114 ~~~iIF~~s~------------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+-+|||.|.. ..++.+.+.|+.. ++.+ .++.+++..+-.+.+++|..
T Consensus 62 g~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~L----------GF~V-~~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 62 GVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQEL----------NFTI-FPYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp EEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHT----------TEEE-EEECSCCHHHHHHHHHHHHT
T ss_pred cEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHC----------CCEE-EEccCCCHHHHHHHHHHHHH
Confidence 4578877762 6788999999887 7776 56678999998899999864
No 202
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=25.19 E-value=1.7e+02 Score=20.07 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 122 s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
+...++.+.+.++.. ++.+. +|.+++..+-.+.+++|...
T Consensus 39 t~~D~~~L~~~f~~L----------gF~V~-~~~dlt~~em~~~l~~~~~~ 78 (146)
T 2dko_A 39 TDVDAANLRETFRNL----------KYEVR-NKNDLTREEIVELMRDVSKE 78 (146)
T ss_dssp HHHHHHHHHHHHHHT----------TCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHC----------CCEEE-EeeCCCHHHHHHHHHHHHHh
Confidence 345688888888877 77754 55678888888888888763
No 203
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=24.83 E-value=1.5e+02 Score=25.97 Aligned_cols=71 Identities=10% Similarity=0.049 Sum_probs=46.2
Q ss_pred CCChHHHH-HHHHHhc--CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcCC
Q psy9509 97 TNLKPLVL-YQLIRKH--AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 97 ~~~k~~~l-~~ll~~~--~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~~ 173 (231)
...|-... ..++... .+.++++.++++.-+.+.++.++.... .+..+..++|+....++. .+.
T Consensus 56 GsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~-------~g~~v~~~~G~~~~~~~~-------~~~ 121 (715)
T 2va8_A 56 GSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWEL-------IGFKVAMTSGDYDTDDAW-------LKN 121 (715)
T ss_dssp TSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGG-------GTCCEEECCSCSSSCCGG-------GGG
T ss_pred CCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhc-------CCCEEEEEeCCCCCchhh-------cCC
Confidence 35564443 3333221 467999999999999999998854311 156788888877654321 136
Q ss_pred ccEEEEcC
Q psy9509 174 IDLVVASD 181 (231)
Q Consensus 174 ~~vlv~T~ 181 (231)
.+|+|+|+
T Consensus 122 ~~Iiv~Tp 129 (715)
T 2va8_A 122 YDIIITTY 129 (715)
T ss_dssp CSEEEECH
T ss_pred CCEEEEcH
Confidence 77888886
No 204
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=24.59 E-value=1.9e+02 Score=22.15 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 123 AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 123 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..+++.+.+.|+.. ++.+ .++.+++..+-.+.+++|..
T Consensus 55 ~~Da~~L~~~f~~L----------GF~V-~~~~dlt~~em~~~l~~~~~ 92 (272)
T 1m72_A 55 NVDSDNLSKVLKTL----------GFKV-TVFPNLKSEEINKFIQQTAE 92 (272)
T ss_dssp HHHHHHHHHHHHHT----------TCEE-EEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC----------CCEE-EEecCcCHHHHHHHHHHHHH
Confidence 56788888888877 7775 45567888888888888865
No 205
>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2
Probab=23.98 E-value=53 Score=25.07 Aligned_cols=34 Identities=9% Similarity=0.014 Sum_probs=22.9
Q ss_pred HHHHHHHhc---CCCcEEEEEcchH-HHHHHHHHHhhh
Q psy9509 103 VLYQLIRKH---AMQGVLCFVNTAQ-GAHRLARLLHHI 136 (231)
Q Consensus 103 ~l~~ll~~~---~~~~~iIF~~s~~-~~~~l~~~l~~~ 136 (231)
.+...+... ...++++||.+-. .+..++..|...
T Consensus 66 ~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~ 103 (285)
T 1uar_A 66 EFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYN 103 (285)
T ss_dssp HHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHc
Confidence 344445442 4567899998865 577788888765
No 206
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Probab=23.96 E-value=1.6e+02 Score=21.47 Aligned_cols=33 Identities=12% Similarity=-0.036 Sum_probs=25.4
Q ss_pred CCcEEEEEcchH-HHHHHHHHHhhhccccccCCCCccc-EEEEcCC
Q psy9509 113 MQGVLCFVNTAQ-GAHRLARLLHHIDNVATKGAGTKMN-IAEVYSD 156 (231)
Q Consensus 113 ~~~~iIF~~s~~-~~~~l~~~l~~~~~~~~~~~~~~~~-~~~~h~~ 156 (231)
..+++|||.+-. .+..++..|. . |+. +..+.|+
T Consensus 61 ~~~ivvyc~~g~~~s~~a~~~L~-~----------G~~~v~~l~GG 95 (230)
T 2eg4_A 61 RSPVVLYDEGLTSRLCRTAFFLG-L----------GGLEVQLWTEG 95 (230)
T ss_dssp CSSEEEECSSSCHHHHHHHHHHH-H----------TTCCEEEECSS
T ss_pred CCEEEEEcCCCCccHHHHHHHHH-c----------CCceEEEeCCC
Confidence 568999998877 7888888888 6 553 6667766
No 207
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=23.46 E-value=56 Score=27.74 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.9
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
..+++++||.+-..+...+..|++. ++.+..+.|++.
T Consensus 523 ~~~~iv~~c~~g~rs~~a~~~l~~~----------G~~v~~l~gG~~ 559 (565)
T 3ntd_A 523 KDKEIIIFSQVGLRGNVAYRQLVNN----------GYRARNLIGGYR 559 (565)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHHT----------TCCEEEETTHHH
T ss_pred CcCeEEEEeCCchHHHHHHHHHHHc----------CCCEEEEcChHH
Confidence 4568999999999999999999887 778888888764
No 208
>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}
Probab=23.37 E-value=46 Score=25.92 Aligned_cols=47 Identities=6% Similarity=-0.049 Sum_probs=32.5
Q ss_pred HHHHHHHHhc---CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcc-cEEEEcCCCC
Q psy9509 102 LVLYQLIRKH---AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKM-NIAEVYSDLK 158 (231)
Q Consensus 102 ~~l~~ll~~~---~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~h~~~~ 158 (231)
+.+.+.+... ...++++||.+-..+...+..|... |+ .+..+.|++.
T Consensus 240 ~~l~~~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~----------G~~~v~~~~Gg~~ 290 (302)
T 3olh_A 240 EEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLC----------GKPDVPIYDGSWV 290 (302)
T ss_dssp HHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTT----------TCCCCCEESSHHH
T ss_pred HHHHHHHHhcCCCCCCCEEEECCChHHHHHHHHHHHHc----------CCCCeeEeCCcHH
Confidence 4455555432 4568999999977777778888766 65 4667777654
No 209
>3qhq_A CSN2, SAG0897 family crispr-associated protein; helicase, transferase; 2.00A {Streptococcus agalactiae} PDB: 3toc_A 3v7f_A
Probab=23.11 E-value=2e+02 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcc-----hHHHHHHHHHHhhh
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNT-----AQGAHRLARLLHHI 136 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s-----~~~~~~l~~~l~~~ 136 (231)
|+....++..+....+++||+|. .++..++++.+...
T Consensus 148 ki~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~ 189 (229)
T 3qhq_A 148 KCFEIIQVYHYLTKKNLLVFVNSGAYLTKDEVIKLCEYINLM 189 (229)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHh
Confidence 44455555566677899999986 56777777777665
No 210
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=22.86 E-value=1.3e+02 Score=18.18 Aligned_cols=45 Identities=11% Similarity=0.159 Sum_probs=25.8
Q ss_pred cEEEEEcc-hHHH------HHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 115 GVLCFVNT-AQGA------HRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 115 ~~iIF~~s-~~~~------~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
+++||+.+ +..| .++.+.|... ++....+.=..++..+....+..
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~----------~i~~~~~di~~~~~~~~~l~~~~ 54 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGK----------RIQYQLVDISQDNALRDEMRTLA 54 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHT----------TCCCEEEETTSCHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHC----------CCceEEEECCCCHHHHHHHHHHh
Confidence 45565543 3334 7777778776 56665665555555555554443
No 211
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.67 E-value=3.1e+02 Score=22.23 Aligned_cols=68 Identities=12% Similarity=0.188 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCCcEEEEEc-c-hH---HHHHHHHHHhhhccccccCCCCcccEEEEcC---CCCHHHHHHHHHHHHcCC
Q psy9509 102 LVLYQLIRKHAMQGVLCFVN-T-AQ---GAHRLARLLHHIDNVATKGAGTKMNIAEVYS---DLKFDQRNKIIQEFRRRK 173 (231)
Q Consensus 102 ~~l~~ll~~~~~~~~iIF~~-s-~~---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~---~~~~~~r~~~~~~f~~~~ 173 (231)
..+-+.++....++++|.+. . .. ..+.+.+.|++. ++.+..+.+ .-+...=.+..+.++...
T Consensus 32 ~~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~----------g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~ 101 (407)
T 1vlj_A 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKH----------GIEWVEVSGVKPNPVLSKVHEAVEVAKKEK 101 (407)
T ss_dssp GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHT----------TCEEEEECCCCSSCBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHc----------CCeEEEecCccCCCCHHHHHHHHHHHHhcC
Confidence 33455555544467888875 2 22 256666666554 555656655 234455566777788877
Q ss_pred ccEEEE
Q psy9509 174 IDLVVA 179 (231)
Q Consensus 174 ~~vlv~ 179 (231)
.+++|+
T Consensus 102 ~D~IIa 107 (407)
T 1vlj_A 102 VEAVLG 107 (407)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888876
No 212
>3s5u_A Putative uncharacterized protein; crispr, crispr adaptation mechanism, NEW spacer aquisition, binding, DNA binding protein; 2.70A {Enterococcus faecalis}
Probab=22.41 E-value=2e+02 Score=21.29 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhcCCCcEEEEEcc-----hHHHHHHHHHHhhh
Q psy9509 100 KPLVLYQLIRKHAMQGVLCFVNT-----AQGAHRLARLLHHI 136 (231)
Q Consensus 100 k~~~l~~ll~~~~~~~~iIF~~s-----~~~~~~l~~~l~~~ 136 (231)
|+....++..+....+++||+|. .++..++++.+...
T Consensus 148 ~i~~~lki~~el~~kkllvfvNl~~YLt~eEl~~L~e~i~~~ 189 (220)
T 3s5u_A 148 KVMEITQVHRYLSKKKLLIFINACTYLTEDEVQQVVEYISLN 189 (220)
T ss_dssp HHHHHHHHHHHCTTCCEEEEESGGGGCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCEEEEEChHHhCCHHHHHHHHHHHHHh
Confidence 44445555566678899999986 46677777776655
No 213
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=22.21 E-value=2.5e+02 Score=21.07 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=41.0
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHH-HHHHHHHHc--CCccEEEEc
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR-NKIIQEFRR--RKIDLVVAS 180 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r-~~~~~~f~~--~~~~vlv~T 180 (231)
.+.++++...+.+..+.+.+.+... +..+..+..+++..+. .+.+++..+ |.+++||..
T Consensus 55 ~G~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnn 116 (276)
T 3r1i_A 55 AGAQVAVAARHSDALQVVADEIAGV----------GGKALPIRCDVTQPDQVRGMLDQMTGELGGIDIAVCN 116 (276)
T ss_dssp TTCEEEEEESSGGGGHHHHHHHHHT----------TCCCEEEECCTTCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc----------CCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3567888888888888888887665 4567777888776543 344444432 789999874
No 214
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=21.25 E-value=2.8e+02 Score=21.17 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 124 QGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 124 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
..++.+.+.|+.. ++.+ .++.+++..+-.+.+++|..
T Consensus 46 ~D~~~L~~~f~~L----------gF~V-~~~~dlt~~em~~~l~~~~~ 82 (277)
T 1nw9_B 46 IDCEKLRRRFSSL----------HFMV-EVKGDLTAKKMVLALLELAR 82 (277)
T ss_dssp HHHHHHHHHHHHT----------TEEE-EEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC----------CCEE-EEEcCCCHHHHHHHHHHHHH
Confidence 4788888888887 7776 45678888888888888865
No 215
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=21.22 E-value=84 Score=26.40 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCChHHH-HHHHHHhc----CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 97 TNLKPLV-LYQLIRKH----AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 97 ~~~k~~~-l~~ll~~~----~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
...|-.. +..++... .+.++||.++++.-+.+.++.+++.... .+..+....++.... -..
T Consensus 168 GsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~------~~~~~~~~~~~~~~~--------~~~ 233 (508)
T 3fho_A 168 GTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY------TEVKTAFGIKDSVPK--------GAK 233 (508)
T ss_dssp STTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTT------SSCCEEC------------------C
T ss_pred CccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCc------cCeeEEEEeCCcccc--------ccc
Confidence 3556543 44444432 3458999999999999999999876321 122233323322111 112
Q ss_pred CCccEEEEcCcc------ccccCcCCCcEEEE
Q psy9509 172 RKIDLVVASDNL------ARGIDVENIDVVIN 197 (231)
Q Consensus 172 ~~~~vlv~T~~~------~~Gidi~~v~~vi~ 197 (231)
...+|+|+|.-. ...+++..+++||.
T Consensus 234 ~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 234 IDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 357899998431 12345666777664
No 216
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=21.15 E-value=2.2e+02 Score=19.93 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHcC
Q psy9509 123 AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRR 172 (231)
Q Consensus 123 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~~ 172 (231)
...++.+.+.++.. ++.+ .+|.+++..+-.+.+++|...
T Consensus 54 ~~D~~~L~~~f~~L----------gF~V-~~~~dlt~~em~~~l~~~~~~ 92 (164)
T 1qtn_A 54 HLDAGALTTTFEEL----------HFEI-KPHDDCTVEQIYEILKIYQLM 92 (164)
T ss_dssp HHHHHHHHHHHHHT----------TCEE-EEEESCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC----------CCEE-EEecCCCHHHHHHHHHHHHHh
Confidence 56688888888877 7776 556778888888889999653
No 217
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=20.93 E-value=2.5e+02 Score=22.01 Aligned_cols=47 Identities=21% Similarity=0.397 Sum_probs=35.5
Q ss_pred CcEEEEEcc-------------hHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHHHc
Q psy9509 114 QGVLCFVNT-------------AQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRR 171 (231)
Q Consensus 114 ~~~iIF~~s-------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 171 (231)
+-+|||.|. ...++.+.+.|+.. ++.+ .++.+++..+-.+.+++|..
T Consensus 61 g~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~L----------GF~V-~~~~dlt~~em~~~l~~f~~ 120 (310)
T 2nn3_C 61 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTL----------GFKV-TVFPNLKSEEINKFIQQTAE 120 (310)
T ss_dssp CEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHT----------TCEE-EEEESCCHHHHHHHHHHHHS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHC----------CCEE-EEecCCCHHHHHHHHHHHHH
Confidence 457777765 56788888888877 7776 45567888888888888865
No 218
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=20.72 E-value=68 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=30.8
Q ss_pred CCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCC
Q psy9509 112 AMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158 (231)
Q Consensus 112 ~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~ 158 (231)
..+++++||.+-..+...+..|++. ++.+..+.|++.
T Consensus 540 ~~~~iv~~C~~g~rs~~a~~~l~~~----------G~~v~~l~GG~~ 576 (588)
T 3ics_A 540 VDKDIYITCQLGMRGYVAARMLMEK----------GYKVKNVDGGFK 576 (588)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHT----------TCCEEEETTHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHc----------CCcEEEEcchHH
Confidence 3568999999999999999999887 777888888764
No 219
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=20.27 E-value=1.9e+02 Score=18.86 Aligned_cols=111 Identities=7% Similarity=0.013 Sum_probs=59.5
Q ss_pred eeeecCCCC-hHHHHHHHHHhcCCCcEEEEEcchHHHHHHHHHHhhhccccccCCCCcccEEEEcCCCCHHHHHHHHHHH
Q psy9509 91 KLTTCSTNL-KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169 (231)
Q Consensus 91 ~~~~~~~~~-k~~~l~~ll~~~~~~~~iIF~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~h~~~~~~~r~~~~~~f 169 (231)
.+..+.+.. -...+..++.......++..+.+..++... +.+. ...+..+.-.++...-...++.+
T Consensus 17 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~---l~~~----------~~dlii~d~~l~~~~g~~~~~~l 83 (152)
T 3eul_A 17 RVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALEL---IKAH----------LPDVALLDYRMPGMDGAQVAAAV 83 (152)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHH---HHHH----------CCSEEEEETTCSSSCHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHH---HHhc----------CCCEEEEeCCCCCCCHHHHHHHH
Confidence 344444433 345566666665433444466666655443 3333 44566665555544455566666
Q ss_pred Hc--CCccEEEEcCcccc-----ccCcCCCcEEEEecCCCCHHHHHHHhcccccC
Q psy9509 170 RR--RKIDLVVASDNLAR-----GIDVENIDVVINYEAPDNIKKYIHRIGRTARG 217 (231)
Q Consensus 170 ~~--~~~~vlv~T~~~~~-----Gidi~~v~~vi~~~~p~~~~~~~qr~GR~gR~ 217 (231)
+. ....|++.|..... .+.. ++..+ +.-|.+...+.+++-++.+.
T Consensus 84 ~~~~~~~~ii~~s~~~~~~~~~~~~~~-g~~~~--l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 84 RSYELPTRVLLISAHDEPAIVYQALQQ-GAAGF--LLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HHTTCSCEEEEEESCCCHHHHHHHHHT-TCSEE--EETTCCHHHHHHHHHHHHHC
T ss_pred HhcCCCCeEEEEEccCCHHHHHHHHHc-CCCEE--EecCCCHHHHHHHHHHHHcC
Confidence 54 34567766654322 2222 22222 24588888888888776543
Done!