Your job contains 1 sequence.
>psy9509
MRRRGVGGLVIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTG
DTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFV
NTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVAS
DNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9509
(231 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004556 - symbol:Dbp73D "Dead box protein 73D" spe... 418 1.3e-38 1
POMBASE|SPCC285.03 - symbol:SPCC285.03 "ATP-dependent RNA... 335 1.0e-29 1
UNIPROTKB|F1MGC9 - symbol:DDX51 "Uncharacterized protein"... 284 2.9e-24 1
MGI|MGI:1916913 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) bo... 272 4.0e-24 2
UNIPROTKB|E2R5R1 - symbol:DDX51 "Uncharacterized protein"... 284 4.4e-24 1
DICTYBASE|DDB_G0293740 - symbol:ddx51 "DEAD/DEAH box heli... 243 7.8e-24 2
UNIPROTKB|Q8N8A6 - symbol:DDX51 "ATP-dependent RNA helica... 274 6.0e-23 1
RGD|1309580 - symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box po... 272 8.8e-23 1
WB|WBGene00022792 - symbol:ZK686.2 species:6239 "Caenorha... 271 9.5e-23 1
TAIR|locus:2130839 - symbol:RH1 "RNA helicase 1" species:... 218 3.4e-22 2
UNIPROTKB|E1BUI4 - symbol:DDX51 "Uncharacterized protein"... 262 1.2e-21 1
ZFIN|ZDB-GENE-040927-28 - symbol:ddx51 "DEAD (Asp-Glu-Ala... 257 3.9e-21 1
SGD|S000003931 - symbol:DRS1 "Nucleolar DEAD-box protein ... 216 2.0e-20 2
TAIR|locus:2130918 - symbol:AT4G16630 species:3702 "Arabi... 214 2.3e-20 2
CGD|CAL0000056 - symbol:orf19.7546 species:5476 "Candida ... 217 3.0e-20 2
ASPGD|ASPL0000059362 - symbol:AN0637 species:162425 "Emer... 198 4.0e-20 2
CGD|CAL0000864 - symbol:DRS1 species:5476 "Candida albica... 217 8.2e-20 2
UNIPROTKB|Q5ACK7 - symbol:DRS1 "ATP-dependent RNA helicas... 217 8.2e-20 2
UNIPROTKB|Q8EBV7 - symbol:SO_3388 "ATP-dependent RNA heli... 214 1.0e-19 2
TIGR_CMR|SO_3388 - symbol:SO_3388 "ATP-dependent RNA heli... 214 1.0e-19 2
TIGR_CMR|GSU_0914 - symbol:GSU_0914 "ATP-dependent RNA he... 205 1.6e-19 2
UNIPROTKB|I3LIB1 - symbol:LOC100625841 "Uncharacterized p... 211 1.7e-19 2
POMBASE|SPAC823.08c - symbol:SPAC823.08c "ATP-dependent R... 195 2.3e-19 2
ZFIN|ZDB-GENE-060623-1 - symbol:ddx52 "DEAD (Asp-Glu-Ala-... 218 2.6e-19 2
DICTYBASE|DDB_G0270396 - symbol:ddx49 "DEAD/DEAH box heli... 198 3.2e-19 2
SGD|S000001107 - symbol:RRP3 "Protein involved in rRNA pr... 211 6.7e-19 2
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 213 7.1e-19 2
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 213 7.1e-19 2
UNIPROTKB|Q48AV0 - symbol:CPS_0042 "ATP-dependent RNA hel... 194 7.5e-19 2
TIGR_CMR|CPS_0042 - symbol:CPS_0042 "ATP-dependent RNA he... 194 7.5e-19 2
UNIPROTKB|Q81QF0 - symbol:BAS2301 "ATP-dependent RNA heli... 199 9.8e-19 2
TIGR_CMR|BA_2475 - symbol:BA_2475 "ATP-dependent RNA heli... 199 9.8e-19 2
ZFIN|ZDB-GENE-031001-8 - symbol:ddx27 "DEAD (Asp-Glu-Ala-... 204 1.1e-18 2
UNIPROTKB|A1A4H6 - symbol:DDX27 "Probable ATP-dependent R... 211 1.6e-18 2
UNIPROTKB|F1Q073 - symbol:DDX27 "Uncharacterized protein"... 211 1.6e-18 2
UNIPROTKB|J9P9C6 - symbol:DDX27 "Uncharacterized protein"... 211 1.7e-18 2
UNIPROTKB|Q96GQ7 - symbol:DDX27 "Probable ATP-dependent R... 210 2.3e-18 2
DICTYBASE|DDB_G0281711 - symbol:ddx27 "DEAD/DEAH box heli... 195 2.4e-18 2
MGI|MGI:2385884 - symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) bo... 209 2.5e-18 2
POMBASE|SPAC30D11.03 - symbol:ddx27 "ATP-dependent RNA he... 203 4.2e-18 2
TIGR_CMR|CPS_1125 - symbol:CPS_1125 "ATP-dependent RNA he... 207 4.4e-18 2
ASPGD|ASPL0000013201 - symbol:AN4233 species:162425 "Emer... 199 6.2e-18 2
UNIPROTKB|F1NQV5 - symbol:DDX27 "Uncharacterized protein"... 204 6.8e-18 2
UNIPROTKB|E1C187 - symbol:DDX27 "Uncharacterized protein"... 204 6.8e-18 2
ZFIN|ZDB-GENE-031030-3 - symbol:ddx49 "DEAD (Asp-Glu-Ala-... 189 9.2e-18 2
UNIPROTKB|A4QYM6 - symbol:DRS1 "ATP-dependent RNA helicas... 201 9.9e-18 2
UNIPROTKB|Q0C4B9 - symbol:HNE_0695 "Putative ATP-dependen... 185 1.0e-17 2
ASPGD|ASPL0000072637 - symbol:AN4903 species:162425 "Emer... 186 1.5e-17 2
WB|WBGene00011032 - symbol:R05D11.4 species:6239 "Caenorh... 204 1.9e-17 2
TIGR_CMR|CPS_1418 - symbol:CPS_1418 "ATP-dependent RNA he... 186 2.4e-17 2
WB|WBGene00022148 - symbol:Y71G12B.8 species:6239 "Caenor... 190 2.9e-17 2
UNIPROTKB|Q8EE19 - symbol:SO_2571 "ATP-dependent RNA heli... 192 3.1e-17 2
TIGR_CMR|SO_2571 - symbol:SO_2571 "ATP-dependent RNA heli... 192 3.1e-17 2
UNIPROTKB|I3LJA0 - symbol:DDX52 "Uncharacterized protein"... 195 3.1e-17 2
TIGR_CMR|SO_3783 - symbol:SO_3783 "ATP-dependent RNA heli... 196 3.8e-17 2
UNIPROTKB|Q3AFI3 - symbol:CHY_0229 "ATP-dependent RNA hel... 194 3.9e-17 2
TIGR_CMR|CHY_0229 - symbol:CHY_0229 "ATP-dependent RNA he... 194 3.9e-17 2
UNIPROTKB|F1S7D9 - symbol:DDX49 "Uncharacterized protein"... 178 3.9e-17 2
UNIPROTKB|Q9KMW4 - symbol:VC_A0204 "ATP-dependent RNA hel... 193 3.9e-17 2
TIGR_CMR|VC_A0204 - symbol:VC_A0204 "ATP-dependent RNA he... 193 3.9e-17 2
WB|WBGene00012059 - symbol:T26G10.1 species:6239 "Caenorh... 193 4.5e-17 2
UNIPROTKB|I3LQ10 - symbol:LOC100626268 "Uncharacterized p... 196 4.5e-17 2
UNIPROTKB|A8MTP9 - symbol:DDX52 "Probable ATP-dependent R... 193 4.5e-17 2
UNIPROTKB|Q8ECL2 - symbol:SO_3125 "ATP-dependent RNA heli... 189 5.2e-17 2
TIGR_CMR|SO_3125 - symbol:SO_3125 "ATP-dependent RNA heli... 189 5.2e-17 2
TIGR_CMR|CPS_3401 - symbol:CPS_3401 "ATP-dependent RNA he... 192 5.2e-17 2
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 192 5.5e-17 2
TIGR_CMR|DET_0183 - symbol:DET_0183 "ATP-dependent RNA he... 201 5.6e-17 2
MGI|MGI:1925644 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) bo... 195 5.8e-17 2
RGD|621743 - symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box pol... 195 5.8e-17 2
UNIPROTKB|E2RB54 - symbol:DDX52 "Uncharacterized protein"... 195 6.0e-17 2
SGD|S000004903 - symbol:HAS1 "ATP-dependent RNA helicase"... 180 7.4e-17 2
ZFIN|ZDB-GENE-021212-1 - symbol:ddx55 "DEAD (Asp-Glu-Ala-... 188 7.7e-17 2
WB|WBGene00019219 - symbol:H20J04.4 species:6239 "Caenorh... 185 8.2e-17 2
UNIPROTKB|Q5ZLB0 - symbol:DDX47 "Uncharacterized protein"... 190 8.6e-17 2
UNIPROTKB|Q8EHT1 - symbol:SO_1136 "ATP-dependent RNA heli... 183 8.9e-17 2
TIGR_CMR|SO_1136 - symbol:SO_1136 "ATP-dependent RNA heli... 183 8.9e-17 2
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 190 9.0e-17 2
DICTYBASE|DDB_G0280147 - symbol:ddx47 "DEAD/DEAH box heli... 190 9.0e-17 2
UNIPROTKB|Q9Y2R4 - symbol:DDX52 "Probable ATP-dependent R... 193 9.7e-17 2
TIGR_CMR|CPS_2658 - symbol:CPS_2658 "ATP-dependent RNA he... 187 9.9e-17 2
UNIPROTKB|F1NQA6 - symbol:DDX52 "Uncharacterized protein"... 191 1.0e-16 2
UNIPROTKB|E1C4M1 - symbol:DDX52 "Uncharacterized protein"... 191 1.0e-16 2
UNIPROTKB|G4N9X9 - symbol:MGG_03229 "ATP-dependent RNA he... 218 1.1e-16 1
UNIPROTKB|Q83DM8 - symbol:rhlE "ATP-dependent RNA helicas... 182 1.1e-16 2
TIGR_CMR|CBU_0670 - symbol:CBU_0670 "ATP-dependent RNA he... 182 1.1e-16 2
ZFIN|ZDB-GENE-050522-359 - symbol:zgc:112350 "zgc:112350"... 190 1.1e-16 2
UNIPROTKB|O05855 - symbol:rhlE "PROBABLE ATP-DEPENDENT RN... 198 1.2e-16 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 195 1.3e-16 2
UNIPROTKB|Q0C354 - symbol:rhlE "ATP-dependent RNA helicas... 181 1.4e-16 2
ASPGD|ASPL0000062195 - symbol:AN10125 species:162425 "Eme... 185 1.6e-16 2
UNIPROTKB|F1NA53 - symbol:DDX49 "Uncharacterized protein"... 172 1.7e-16 2
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 192 2.1e-16 2
UNIPROTKB|J9P4L6 - symbol:DDX52 "Uncharacterized protein"... 195 2.5e-16 2
UNIPROTKB|A5D7C1 - symbol:DDX52 "Probable ATP-dependent R... 189 2.5e-16 2
UNIPROTKB|Q9KLE2 - symbol:VC_A0804 "ATP-dependent RNA hel... 191 2.8e-16 2
TIGR_CMR|VC_A0804 - symbol:VC_A0804 "ATP-dependent RNA he... 191 2.8e-16 2
UNIPROTKB|Q9H0S4 - symbol:DDX47 "Probable ATP-dependent R... 186 3.1e-16 2
MGI|MGI:1915005 - symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) bo... 186 3.1e-16 2
UNIPROTKB|G3V727 - symbol:Ddx47 "Protein Ddx47" species:1... 186 3.1e-16 2
WARNING: Descriptions of 699 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0004556 [details] [associations]
symbol:Dbp73D "Dead box protein 73D" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014296
GO:GO:0005730 GO:GO:0022008 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141 EMBL:M74824
EMBL:AF132173 EMBL:BT010045 PIR:S28762 RefSeq:NP_476833.1
UniGene:Dm.3199 ProteinModelPortal:P26802 SMR:P26802 PaxDb:P26802
PRIDE:P26802 EnsemblMetazoa:FBtr0075347 GeneID:39871
KEGG:dme:Dmel_CG9680 CTD:39871 FlyBase:FBgn0004556
InParanoid:P26802 OMA:CSKTELE OrthoDB:EOG4B8GVH PhylomeDB:P26802
GenomeRNAi:39871 NextBio:815810 Bgee:P26802 GermOnline:CG9680
Uniprot:P26802
Length = 687
Score = 418 (152.2 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 89/214 (41%), Positives = 134/214 (62%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
++ +P +LLFSATLS DPEKL L LFQP+LF +V+ D ++ A
Sbjct: 349 SFGKQPHKLLFSATLSQDPEKLQDLRLFQPRLFATVLTMPVLKDATEEGADTEALTDPGQ 408
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
F+G++TTPAEL+E+ LKPL ++ L+ K+ + LCF N++ A RL +L
Sbjct: 409 FVGRYTTPAELTEQYCVTELRLKPLTVFALVEKYKWKRFLCFTNSSDQATRLTFVL---- 464
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
V + TK ++E+ +L RN+ +++F KI+ ++ SD LARGIDV ++DVV++
Sbjct: 465 KVLFQKYSTK--VSELSGNLSAKVRNERLRDFAAGKINGLICSDALARGIDVADVDVVLS 522
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
YE P +I YIHR+GRTAR GR+GT+VT++T +
Sbjct: 523 YETPRHITTYIHRVGRTARAGRKGTAVTVLTEQD 556
>POMBASE|SPCC285.03 [details] [associations]
symbol:SPCC285.03 "ATP-dependent RNA helicase Dbp6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC285.03 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 EMBL:D89259 PIR:T41249 PIR:T43184
RefSeq:NP_588332.1 ProteinModelPortal:Q76PD3
EnsemblFungi:SPCC285.03.1 GeneID:2538809 KEGG:spo:SPCC285.03
HOGENOM:HOG000203294 OMA:HIDQTPG OrthoDB:EOG490BK3 NextBio:20799991
Uniprot:Q76PD3
Length = 604
Score = 335 (123.0 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 85/220 (38%), Positives = 120/220 (54%)
Query: 14 DTFLTY--PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA 71
DT L Y PS Q+L+FSATL+ DP K+ L L P+L +V+ + + G
Sbjct: 341 DTLLPYRLPSPLQKLVFSATLTRDPSKIASLKLHNPRLV--LVQ------NKDMEVDDGG 392
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
+ + F+ P L E + S+ KP++LY LI + +LCFV + + A RL R
Sbjct: 393 EIEDDAIV--FSVPPTLQEYHVSVSSE-KPILLYHLIHSKNLTNILCFVKSNEAAARLHR 449
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL I + + S L D+R KII F ++L+V SD +ARGIDV N
Sbjct: 450 LLELIH----ESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLLVCSDLMARGIDVAN 505
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
VINY+ P +++ Y+HRIGRTAR GR+G + TLV +HE
Sbjct: 506 TQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHE 545
>UNIPROTKB|F1MGC9 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:DAAA02044956 IPI:IPI01003566 ProteinModelPortal:F1MGC9
Ensembl:ENSBTAT00000022893 Uniprot:F1MGC9
Length = 546
Score = 284 (105.0 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 62/170 (36%), Positives = 94/170 (55%)
Query: 58 GTGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVL 117
G+ P+ + D SG GK+T P L CS KPLV+ LI + VL
Sbjct: 332 GSAHRGPSDPDIDVDE-DSG--GKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVL 388
Query: 118 CFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLV 177
CF N+ + +HRL L+ V +AE S QR I+++F + KI L+
Sbjct: 389 CFTNSRENSHRLFLLVQAFGGVT---------VAEFSSRYGPGQRKSILKQFEQGKIQLL 439
Query: 178 VASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++D +ARGIDV+ + +V+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 440 ISTDAMARGIDVQGVQLVVNYDAPQYLRTYVHRVGRTARAGKSGQAFTLL 489
Score = 211 (79.3 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 54/147 (36%), Positives = 76/147 (51%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L+QP+LF++ G+ P+ + D SG
Sbjct: 298 PQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFST-----GSAHRGPSDPDIDVDE-DSG- 350
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L CS KPLV+ LI + VLCF N+ + +HRL L+
Sbjct: 351 -GKYTFPTGLKHHYVPCSLRFKPLVILHLILEMNFSRVLCFTNSRENSHRLFLLVQAFGG 409
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKI 165
V ++ + S LK ++ KI
Sbjct: 410 VTVAEFSSRYGPGQRKSILKQFEQGKI 436
>MGI|MGI:1916913 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1916913 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK152599 EMBL:BC060646 IPI:IPI00396728 RefSeq:NP_081432.2
UniGene:Mm.392735 UniGene:Mm.5267 ProteinModelPortal:Q6P9R1
SMR:Q6P9R1 PhosphoSite:Q6P9R1 PaxDb:Q6P9R1 PRIDE:Q6P9R1
Ensembl:ENSMUST00000031478 GeneID:69663 KEGG:mmu:69663
UCSC:uc008yre.2 InParanoid:Q6P9R1 ChiTaRS:DDX51 NextBio:330022
Bgee:Q6P9R1 CleanEx:MM_DDX51 Genevestigator:Q6P9R1
GermOnline:ENSMUSG00000029504 Uniprot:Q6P9R1
Length = 639
Score = 272 (100.8 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 55/148 (37%), Positives = 88/148 (59%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L V
Sbjct: 444 GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGGV 503
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+ +AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY+
Sbjct: 504 S---------VAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINYD 554
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 555 APQYLRTYVHRVGRTARAGKTGQAFTLL 582
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ DPEKL +L L+QP+LF++ + G P + A D S
Sbjct: 393 PQMPLQKLLFSATLTQDPEKLQRLGLYQPRLFSTRL-----GQQSPKDT-AEVDENS--- 443
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL++ L+ + + LCF N+ + +HRL L
Sbjct: 444 -GKYTFPVGLTHHYVPCRLSSKPLIVLHLVLRMSCSRALCFTNSRENSHRLYLLAQAFGG 502
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKI 165
V+ ++ + LK ++ KI
Sbjct: 503 VSVAEFSSRYGPGQRKKILKQFEQGKI 529
Score = 36 (17.7 bits), Expect = 4.0e-24, Sum P(2) = 4.0e-24
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 57 AGTGDTQPTSSEAGADN 73
AG G+ P AGA++
Sbjct: 100 AGRGEEAPEELSAGAED 116
>UNIPROTKB|E2R5R1 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 KO:K14807 OMA:HIDQTPG GeneTree:ENSGT00550000075141
CTD:317781 EMBL:AAEX03014583 RefSeq:XP_543351.2
Ensembl:ENSCAFT00000010222 GeneID:486226 KEGG:cfa:486226
Uniprot:E2R5R1
Length = 631
Score = 284 (105.0 bits), Expect = 4.4e-24, P = 4.4e-24
Identities = 59/148 (39%), Positives = 87/148 (58%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
GK+T P LS CS KPL + LI + VLCF N+ + +HRL L+ V
Sbjct: 436 GKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVLCFTNSRENSHRLFLLVQAFGGV 495
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A AE S + QR ++++F + KI L++++D +ARGIDV+ + +VINY+
Sbjct: 496 AA---------AEFSSRCRPGQRKVVLKQFEQGKIQLLISTDAMARGIDVQGVQLVINYD 546
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLV 227
AP ++ Y+HR+GRTAR GR G + TL+
Sbjct: 547 APQYLRTYVHRVGRTARAGRTGQAFTLL 574
Score = 203 (76.5 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 55/150 (36%), Positives = 79/150 (52%)
Query: 17 LTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
++ P P Q+LLFSATL+ +PEKL QL L+QP+LF++ + AG G P + +
Sbjct: 382 ISCPQMPLQKLLFSATLTQNPEKLQQLGLYQPRLFSTGL--AGRG---PRDIDRDGE--- 433
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
SG GK+T P LS CS KPL + LI + VLCF N+ + +HRL L+
Sbjct: 434 SG--GKYTFPTGLSHHYVPCSLRTKPLAILHLILERNFSRVLCFTNSRENSHRLFLLVQA 491
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
VA ++ + LK ++ KI
Sbjct: 492 FGGVAAAEFSSRCRPGQRKVVLKQFEQGKI 521
>DICTYBASE|DDB_G0293740 [details] [associations]
symbol:ddx51 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0293740 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000218
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14807 OMA:HIDQTPG RefSeq:XP_629093.1
ProteinModelPortal:Q54BD6 EnsemblProtists:DDB0234210 GeneID:8629386
KEGG:ddi:DDB_G0293740 Uniprot:Q54BD6
Length = 563
Score = 243 (90.6 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 58/160 (36%), Positives = 86/160 (53%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVL----YQLIRKHAMQG-----VLCFVNTAQGAHRLAR 131
K++ P+ L E + + KPLVL Y+ + K+ G ++CF + HRL
Sbjct: 285 KYSMPSTLKECYIISNGDQKPLVLLNIIYESLLKNNANGENKKKIICFTKSVDITHRLNT 344
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LL I V K E S L +R ++ F+ +ID+++ SD ++RG+D+++
Sbjct: 345 LLKLIGQVDK----LKFTCEEYSSSLSTVERADLLSRFKLNQIDILICSDIMSRGMDIQD 400
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IDVVINY P NI Y+HR+GRTAR G G S T+V E
Sbjct: 401 IDVVINYNTPPNITLYVHRVGRTARAGNFGVSYTIVDKSE 440
Score = 61 (26.5 bits), Expect = 7.8e-24, Sum P(2) = 7.8e-24
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 25 RLLFSATLSHDPEKLHQLSLFQPKLFTS 52
+LL SAT++++P K+ L L P FT+
Sbjct: 251 KLLLSATMTYNPSKISLLQLNAPLFFTT 278
>UNIPROTKB|Q8N8A6 [details] [associations]
symbol:DDX51 "ATP-dependent RNA helicase DDX51"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 KO:K14807 OMA:HIDQTPG CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 OrthoDB:EOG4JM7PM
EMBL:AK097078 EMBL:AC138466 EMBL:BC012461 EMBL:BC040185
EMBL:CR936870 IPI:IPI00217541 RefSeq:NP_778236.2 UniGene:Hs.445168
ProteinModelPortal:Q8N8A6 SMR:Q8N8A6 IntAct:Q8N8A6 STRING:Q8N8A6
PhosphoSite:Q8N8A6 DMDM:229462978 PaxDb:Q8N8A6 PRIDE:Q8N8A6
Ensembl:ENST00000397333 GeneID:317781 KEGG:hsa:317781
UCSC:uc001ujy.4 GeneCards:GC12M132621 H-InvDB:HIX0018137
HGNC:HGNC:20082 HPA:HPA039503 neXtProt:NX_Q8N8A6
PharmGKB:PA134974036 InParanoid:Q8N8A6 PhylomeDB:Q8N8A6
GenomeRNAi:317781 NextBio:96442 Bgee:Q8N8A6 CleanEx:HS_DDX51
Genevestigator:Q8N8A6 GermOnline:ENSG00000185163 Uniprot:Q8N8A6
Length = 666
Score = 274 (101.5 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 57/156 (36%), Positives = 90/156 (57%)
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLAR 131
D G GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL
Sbjct: 463 DTDGDGDSGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFL 522
Query: 132 LLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
L+ V ++AE S QR I+++F + KI L++++D ARGIDV+
Sbjct: 523 LVQAFGGV---------DVAEFSSRYGPGQRRMILKQFEQGKIQLLISTDATARGIDVQG 573
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+++V+NY+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 574 VELVVNYDAPQYLRTYVHRVGRTARAGKTGQAFTLL 609
Score = 186 (70.5 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 46/121 (38%), Positives = 63/121 (52%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL QL L QP+LF++ + G DT G
Sbjct: 421 PQMPLQKLLFSATLTQNPEKLQQLGLHQPRLFSTGLAHRGLEDTD-----------GDGD 469
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+ P L+ CS + KPLV+ L+ + VLCF N+ + +HRL L+
Sbjct: 470 SGKYAFPVGLTHHYVPCSLSSKPLVVLHLVLEMGFSRVLCFTNSRENSHRLFLLVQAFGG 529
Query: 139 V 139
V
Sbjct: 530 V 530
>RGD|1309580 [details] [associations]
symbol:Ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 51"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309580 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:HIDQTPG OrthoDB:EOG4JM7PM IPI:IPI00371200
Ensembl:ENSRNOT00000056729 UCSC:RGD:1309580 ArrayExpress:D3ZQ94
Uniprot:D3ZQ94
Length = 635
Score = 272 (100.8 bits), Expect = 8.8e-23, P = 8.8e-23
Identities = 55/149 (36%), Positives = 88/149 (59%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+GK+T P L+ C + KPL+++ L+ LCF N+ + +HRL L
Sbjct: 439 LGKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSRALCFTNSRENSHRLFLLAQAFGG 498
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
V+ +AE S QR KI+++F + KI L++++D ARGIDV+ +++VINY
Sbjct: 499 VS---------VAEFSSRYGPGQRKKILKQFEQGKIQLLISTDATARGIDVQGVELVINY 549
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+AP ++ Y+HR+GRTAR G+ G + TL+
Sbjct: 550 DAPQYLRTYVHRVGRTARAGKTGQAFTLL 578
Score = 181 (68.8 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 47/147 (31%), Positives = 74/147 (50%)
Query: 20 PSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGF 78
P P Q+LLFSATL+ +PEKL +L L+QP+LF++ + G P + +NL
Sbjct: 389 PQMPLQKLLFSATLTQNPEKLQRLGLYQPRLFSTRL-----GHQSPRDTVEVDENL---- 439
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
GK+T P L+ C + KPL+++ L+ LCF N+ + +HRL L
Sbjct: 440 -GKYTFPVGLTHHYVPCRLSSKPLIVFHLVLGMNFSRALCFTNSRENSHRLFLLAQAFGG 498
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKI 165
V+ ++ + LK ++ KI
Sbjct: 499 VSVAEFSSRYGPGQRKKILKQFEQGKI 525
>WB|WBGene00022792 [details] [associations]
symbol:ZK686.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0006898 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 KO:K14807 GeneTree:ENSGT00550000075141
EMBL:FO080431 PIR:D88511 PIR:S44912 RefSeq:NP_498690.2
ProteinModelPortal:P34668 SMR:P34668 STRING:P34668 PaxDb:P34668
PRIDE:P34668 EnsemblMetazoa:ZK686.2 GeneID:176088
KEGG:cel:CELE_ZK686.2 UCSC:ZK686.2 CTD:176088 WormBase:ZK686.2
HOGENOM:HOG000199518 InParanoid:P34668 OMA:KLMREEW NextBio:891060
Uniprot:P34668
Length = 593
Score = 271 (100.5 bits), Expect = 9.5e-23, P = 9.5e-23
Identities = 64/204 (31%), Positives = 108/204 (52%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
PQ+++ SATLS D E+LH +LF+P+LF++ D TS D++S G+
Sbjct: 314 PQKIVLSATLSKDVEELHLWNLFKPRLFSATA--VSVKDI--TSGIPQVDHVS----GRL 365
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
P+ +S +L PL +YQ I ++ L FVN ++RLA +L +
Sbjct: 366 ALPSSISHRLVVTDPKFHPLAVYQQITRNKFNRTLIFVNEVSSSNRLAHVLKEL------ 419
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + + L +R K++++F + + +++ SD LARG D+ +D VINY P
Sbjct: 420 -CKDQFEVDYFTAQLFGKRRYKMLEKFNKNENRVLICSDVLARGTDLNKVDCVINYNLPA 478
Query: 203 NIKKYIHRIGRTARGGRQGTSVTL 226
+ K ++HR GRT R G+ G +++
Sbjct: 479 DDKLFVHRAGRTGRAGQDGYVISV 502
>TAIR|locus:2130839 [details] [associations]
symbol:RH1 "RNA helicase 1" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0006626 "protein
targeting to mitochondrion" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=TAS] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 GO:GO:0017151 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z97339 GO:GO:0008026 eggNOG:COG0513
PROSITE:PS51195 EMBL:AL161542 KO:K14807 HOGENOM:HOG000239572
OMA:CSKTELE EMBL:Y11187 EMBL:Y11154 IPI:IPI00538787 PIR:A71424
PIR:E85175 RefSeq:NP_193320.6 UniGene:At.33
ProteinModelPortal:Q7FGZ2 SMR:Q7FGZ2 STRING:Q7FGZ2 PaxDb:Q7FGZ2
PRIDE:Q7FGZ2 EnsemblPlants:AT4G15850.1 GeneID:827266
KEGG:ath:AT4G15850 GeneFarm:907 TAIR:At4g15850 InParanoid:Q7FGZ2
Genevestigator:Q7FGZ2 GermOnline:AT4G15850 Uniprot:Q7FGZ2
Length = 522
Score = 218 (81.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 50/151 (33%), Positives = 80/151 (52%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++ P +L C T +KP+ L L++ + + F ++ + RL +LL+ +
Sbjct: 303 RYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGD-- 360
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
K+ E L R+K ++ FR+ I ++VASD L RG+DV+ + VINY+
Sbjct: 361 -----PKIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDM 415
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K +IHR GRTAR G+ G TL++ HE
Sbjct: 416 PPFAKTFIHRAGRTARAGQAGRCFTLLSNHE 446
Score = 70 (29.7 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 19 YPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTS 52
YP R +++ SATL+ DP KL QL L P T+
Sbjct: 267 YP-RLVKMVLSATLTQDPSKLIQLDLHHPLFMTT 299
>UNIPROTKB|E1BUI4 [details] [associations]
symbol:DDX51 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 OMA:HIDQTPG GeneTree:ENSGT00550000075141
EMBL:AADN02043240 IPI:IPI00601309 Ensembl:ENSGALT00000010245
Uniprot:E1BUI4
Length = 676
Score = 262 (97.3 bits), Expect = 1.2e-21, P = 1.2e-21
Identities = 54/147 (36%), Positives = 85/147 (57%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+T P LS+ C N KPL+L + VLCF N+ + +HRL L+ +
Sbjct: 482 KYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFGGIT 541
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
+AE S L ++R + ++EF + KI L++++D ARGID++ ++ VINY+
Sbjct: 542 ---------VAEFSSRLPPNERQRTMKEFEQGKIQLLISTDATARGIDIKGVNCVINYDT 592
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLV 227
P I+ YIHR+GRTAR G+ G + ++V
Sbjct: 593 PQFIRTYIHRVGRTARAGKAGLAFSMV 619
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 53/148 (35%), Positives = 74/148 (50%)
Query: 19 YPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG 77
YP P Q+LLFSATL+ DPEKL QL LFQP+LFTSV T T ++ +
Sbjct: 427 YPQIPLQKLLFSATLTQDPEKLQQLGLFQPRLFTSVYSEKKTL-RDGTETKEDCEE---- 481
Query: 78 FIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
K+T P LS+ C N KPL+L + VLCF N+ + +HRL L+
Sbjct: 482 ---KYTLPEGLSQSYVPCDLNSKPLLLLHFMLTKKFTRVLCFTNSREASHRLFLLVQAFG 538
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+ +++ E +K ++ KI
Sbjct: 539 GITVAEFSSRLPPNERQRTMKEFEQGKI 566
>ZFIN|ZDB-GENE-040927-28 [details] [associations]
symbol:ddx51 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
51" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040927-28 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
KO:K14807 EMBL:AY648772 IPI:IPI00500210 RefSeq:NP_001003864.1
UniGene:Dr.77952 ProteinModelPortal:Q6DRI7 STRING:Q6DRI7
PRIDE:Q6DRI7 GeneID:445387 KEGG:dre:445387 CTD:317781
HOGENOM:HOG000239572 HOVERGEN:HBG081427 InParanoid:Q6DRI7
OrthoDB:EOG4JM7PM NextBio:20832091 ArrayExpress:Q6DRI7
Uniprot:Q6DRI7
Length = 652
Score = 257 (95.5 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 55/146 (37%), Positives = 82/146 (56%)
Query: 82 FTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT 141
F P LSE C+ + KPL++ + + LCF N+ +GAHRL L+ V
Sbjct: 459 FHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTNSREGAHRLYLLVKLFGGV-- 516
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+AE S L +R K +++F + KI L++++D ARGID+ + VINY+AP
Sbjct: 517 -------EVAEFSSKLSPGERQKTLKDFEKGKIPLLISTDAAARGIDINGVKCVINYDAP 569
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLV 227
I+ YIHR+GRTAR G+ G + T +
Sbjct: 570 QYIRTYIHRVGRTARAGKAGLAFTFL 595
Score = 170 (64.9 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 56/164 (34%), Positives = 78/164 (47%)
Query: 3 RRGVGGLVIMWDTFLTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGD 61
RR V G + L+ P P Q+LLFSATL+ +PEKL L L QP+LF+S D
Sbjct: 396 RRTVPGPITA--ASLSPPQIPLQKLLFSATLTQNPEKLQLLDLHQPRLFSST---HSLTD 450
Query: 62 TQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVN 121
P S+ D F P LSE C+ + KPL++ + + LCF N
Sbjct: 451 N-PAQSQ---DT--------FHFPQGLSEYYVPCTFSKKPLIILHFLLRLKFSPALCFTN 498
Query: 122 TAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+ +GAHRL L+ V +K++ E LK ++ KI
Sbjct: 499 SREGAHRLYLLVKLFGGVEVAEFSSKLSPGERQKTLKDFEKGKI 542
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 216 (81.1 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 49/133 (36%), Positives = 82/133 (61%)
Query: 98 NLKPLVLYQLIRKHAMQG---VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
+LKP +L+ LIRK G ++ FV + AHRL R++ + G M++ E++
Sbjct: 461 HLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRL-RII-----MGLLG----MSVGELH 510
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
L +QR + +F+ ++ +++ +D +RG+D+ I+VVINY+ P + + Y+HR+GRT
Sbjct: 511 GSLTQEQRLDSVNKFKNLEVPVLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRT 570
Query: 215 ARGGRQGTSVTLV 227
AR GR+G SVT V
Sbjct: 571 ARAGREGRSVTFV 583
Score = 61 (26.5 bits), Expect = 2.0e-20, Sum P(2) = 2.0e-20
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQ 63
PS Q LLFSAT++ + L LSL +P ++ + A T TQ
Sbjct: 407 PSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPPKKAATKLTQ 451
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 214 (80.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 50/126 (39%), Positives = 74/126 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
VL L + V+ F T Q AHRL ++L + AG K AE++ +L QR
Sbjct: 402 VLLSLCTRTFKSKVIIFSGTKQAAHRL-KILFGL-------AGLKA--AELHGNLTQAQR 451
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
++ FR++++D ++A+D ARG+D+ + VINY P I Y+HR+GRTAR GR+G
Sbjct: 452 LDSLELFRKQEVDFLIATDVAARGLDIIGVQTVINYACPREIDSYVHRVGRTARAGREGY 511
Query: 223 SVTLVT 228
+VT VT
Sbjct: 512 AVTFVT 517
Score = 63 (27.2 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q +LFSAT++ + ++L +LSL +P
Sbjct: 342 PKRRQTMLFSATMTEEVKELVKLSLNKP 369
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 217 (81.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T L + + + K +L L+ + + ++ F T A R A LL I
Sbjct: 330 KYQTADNLVQSMMLVNDGYKNTILIHLLNEFMGKSIIVFTRTVAHAQRTA-LLARI---- 384
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G N ++ L QR + +F+ + +++VA+D ARG+D+ ++DVVINY+
Sbjct: 385 ---LG--FNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDI 439
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G S++L+T ++
Sbjct: 440 PTDSKAYIHRVGRTARAGRSGKSISLITQYD 470
Score = 53 (23.7 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT+++ EKL + SL P
Sbjct: 295 PIKRTTYLFSATMTNKIEKLQRASLHNP 322
>ASPGD|ASPL0000059362 [details] [associations]
symbol:AN0637 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14807 HOGENOM:HOG000203294 EMBL:AACD01000008 RefSeq:XP_658241.1
ProteinModelPortal:Q5BFP3 EnsemblFungi:CADANIAT00002039
GeneID:2876415 KEGG:ani:AN0637.2 OMA:KQAREAC OrthoDB:EOG4CRQ7F
Uniprot:Q5BFP3
Length = 853
Score = 198 (74.8 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 42/116 (36%), Positives = 69/116 (59%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
VL F +++ A RL+RLL + N + G I + K K + +R+ KI
Sbjct: 684 VLIFTKSSESASRLSRLLALL-NPSISGL-----IGTIVKSNKSSASRKTLSAYRQGKIS 737
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+++A+D +RG+D++++ VINY+ P +I Y+HR+GRTAR G +G++ TLV E
Sbjct: 738 IIIATDRASRGLDLQSLTHVINYDVPASITTYVHRVGRTARAGNEGSAWTLVAHRE 793
Score = 78 (32.5 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKF 82
P++++ SAT++ D KL+ L L P+L VV G+ T E+G + +F
Sbjct: 507 PRKVVLSATMTKDVSKLNSLRLTNPRLV--VV--GGSDQTTTADDESGVVVHADE---RF 559
Query: 83 TTPAELSE-KLTTCSTNLKPLVLYQLI 108
T P L E + KPL L +L+
Sbjct: 560 TLPTTLREYSIAVGDGEHKPLYLLRLL 586
Score = 36 (17.7 bits), Expect = 9.4e-16, Sum P(2) = 9.4e-16
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 58 GTGDTQPTSSEAGADNLSS 76
GT + TS ++ +D SS
Sbjct: 615 GTSSDESTSDDSSSDESSS 633
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 217 (81.4 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 49/129 (37%), Positives = 79/129 (61%)
Query: 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158
LKP +LYQL+ K V+ FV + AHRL +L + G K ++E++ L
Sbjct: 360 LKPALLYQLL-KGVSSRVVVFVARKETAHRLRIVLGLL--------GLK--VSELHGALT 408
Query: 159 FDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
+QR + ++ F+ ++ +++ +D ARG+D+ I++VINY+ P + Y+HR+GRTAR G
Sbjct: 409 QEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAG 468
Query: 219 RQGTSVTLV 227
R GTS+T V
Sbjct: 469 RDGTSITFV 477
Score = 51 (23.0 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP 47
Q LLFSAT++ + L QLSL +P
Sbjct: 309 QTLLFSATMNTRIQDLIQLSLQKP 332
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 217 (81.4 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 49/129 (37%), Positives = 79/129 (61%)
Query: 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158
LKP +LYQL+ K V+ FV + AHRL +L + G K ++E++ L
Sbjct: 360 LKPALLYQLL-KGVSSRVVVFVARKETAHRLRIVLGLL--------GLK--VSELHGALT 408
Query: 159 FDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
+QR + ++ F+ ++ +++ +D ARG+D+ I++VINY+ P + Y+HR+GRTAR G
Sbjct: 409 QEQRLQNVKNFKSLEVPVLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAG 468
Query: 219 RQGTSVTLV 227
R GTS+T V
Sbjct: 469 RDGTSITFV 477
Score = 51 (23.0 bits), Expect = 8.2e-20, Sum P(2) = 8.2e-20
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP 47
Q LLFSAT++ + L QLSL +P
Sbjct: 309 QTLLFSATMNTRIQDLIQLSLQKP 332
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 214 (80.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 50/149 (33%), Positives = 81/149 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + VAT+
Sbjct: 215 TTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL-GVATQ 273
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ DL R K++QEF++ + ++VA+D ARG+D+ + VIN+E P
Sbjct: 274 S---------FHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPF 324
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGRT R G G ++TL + +
Sbjct: 325 IAEDYIHRIGRTGRAGSAGLAITLFSQED 353
Score = 45 (20.9 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
P++ Q LLFSATL + L PK V +P T
Sbjct: 178 PAQRQTLLFSATLDDSIFSFSKNLLRDPKRI-EVAKPNTT 216
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 214 (80.4 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 50/149 (33%), Positives = 81/149 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT A++ +++ ++ K + L+R Q VL F T QG +L L+ + VAT+
Sbjct: 215 TTAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKL-GVATQ 273
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ DL R K++QEF++ + ++VA+D ARG+D+ + VIN+E P
Sbjct: 274 S---------FHGDLSQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPF 324
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ YIHRIGRT R G G ++TL + +
Sbjct: 325 IAEDYIHRIGRTGRAGSAGLAITLFSQED 353
Score = 45 (20.9 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
P++ Q LLFSATL + L PK V +P T
Sbjct: 178 PAQRQTLLFSATLDDSIFSFSKNLLRDPKRI-EVAKPNTT 216
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 205 (77.2 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 50/153 (32%), Positives = 77/153 (50%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+G ++ L +LK +L +L+R + VL F T HR RL ++
Sbjct: 205 VGTVAPAVTVAHALYPVEQHLKTPLLLELLRHTDTESVLIFTRTK---HRAKRLGEQLEK 261
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ A + N+++ ++R + FR ++VA+D ARGIDV + VINY
Sbjct: 262 AGYRAASLQGNLSQ-------NRRQAALDGFRDGTFQILVATDIAARGIDVSQVSHVINY 314
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ PD + YIHRIGRT R R G + TLVT+ +
Sbjct: 315 DIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
Score = 55 (24.4 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 18/41 (43%), Positives = 20/41 (48%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGT 59
P R Q LLFSAT+ D L Q L P + V PA T
Sbjct: 173 PPRRQTLLFSATMPIDIRTLAQDILVDPVTVQVGTVAPAVT 213
>UNIPROTKB|I3LIB1 [details] [associations]
symbol:LOC100625841 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 GeneTree:ENSGT00550000074997 EMBL:CU407277
Ensembl:ENSSSCT00000025578 OMA:VIAHYRE Uniprot:I3LIB1
Length = 442
Score = 211 (79.3 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 99 IVAALLMRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 148
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 149 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 208
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 209 SVSLVGEEE 217
Score = 48 (22.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 43 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 72
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 195 (73.7 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 51/151 (33%), Positives = 75/151 (49%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
KF+T L ++ K L L+ + A ++ F T RLA LL
Sbjct: 253 KFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLR------ 306
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T G + ++ L R + +F+ +VA+D ARG+D+ +DVVINY+
Sbjct: 307 TLG----FSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDI 362
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G S+ LVT ++
Sbjct: 363 PTDSKAYIHRVGRTARAGRAGKSIALVTQYD 393
Score = 65 (27.9 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P + LLFSAT++ EKL + SL QP + +V T DT
Sbjct: 218 PHERRTLLFSATMTSKVEKLQRASLHQP-VRVAVSSKFSTVDT 259
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 218 (81.8 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 61/159 (38%), Positives = 90/159 (56%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DNL S IG + AE E+ L S N K L + LI++ + VL FV Q R
Sbjct: 371 DNLVSVSIGARNSAAETVEQQLLFVGSENGKILAMRNLIKQGFLPPVLVFV---QSIDR- 426
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
AR L+H + +G +N+ +++D QR+ ++ FR KI +++ + LARGID
Sbjct: 427 ARELYH--ELVYEG----INVDVIHADRTQQQRDNVVSSFRSGKIWVLICTALLARGIDF 480
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ I++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 481 KGINLVINYDFPTSAVEYIHRIGRTGRAGHKGKAVTFFT 519
Score = 45 (20.9 bits), Expect = 2.6e-19, Sum P(2) = 2.6e-19
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 24 QRLLFSATLSHDPEKLHQLSL 44
+R+LFSAT + D E+ +L+L
Sbjct: 350 RRVLFSATFATDVERWCKLNL 370
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 198 (74.8 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 45/153 (29%), Positives = 80/153 (52%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T L ++ K L +++KH + FVN A
Sbjct: 213 KYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVE------------A 260
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKI--IQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
KG K++I V DQ++++ ++ F+ K+ ++VA+D +RG+D+ ++ +VINY
Sbjct: 261 VKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASRGLDIPDVQIVINY 320
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ ++ K YIHR+GRTAR GR G +++ +T H+
Sbjct: 321 KLSNSSKDYIHRVGRTARFGRSGRAISFITPHD 353
Score = 62 (26.9 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLF 50
P + Q LLFSAT++ + KL ++L +P +F
Sbjct: 178 PEKRQTLLFSATMTKNLTKLDSIALNKPFIF 208
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 211 (79.3 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 50/151 (33%), Positives = 83/151 (54%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T L + L LK L L+ + + ++ F T A RL+ L + ++ A
Sbjct: 289 KYQTVDTLVQTLMVVPGGLKNTYLIYLLNEFIGKTMIIFTRTKANAERLSGLCNLLEFSA 348
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T ++ DL +QR + F+ K ++VA+D ARG+D+ ++D+V+NY+
Sbjct: 349 TA----------LHGDLNQNQRMGSLDLFKAGKRSILVATDVAARGLDIPSVDIVVNYDI 398
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G S++LV+ ++
Sbjct: 399 PVDSKSYIHRVGRTARAGRSGKSISLVSQYD 429
Score = 45 (20.9 bits), Expect = 6.7e-19, Sum P(2) = 6.7e-19
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 27 LFSATLSHDPEKLHQLSLFQP 47
LFSAT++ +KL + SL P
Sbjct: 261 LFSATMTSKIDKLQRASLTNP 281
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 213 (80.0 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 39/96 (40%), Positives = 63/96 (65%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
++ + TK K ++ +YSDL +R+ I++EFR +++++D LARGIDV+ + +V
Sbjct: 273 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 332
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 333 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368
Score = 37 (18.1 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++ F P Q +L SAT+ +D
Sbjct: 184 IYQIFTLLPPTTQVVLLSATMPND 207
Score = 36 (17.7 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 102 LVLYQLIRKHAMQGVLCFVNTAQG 125
L + I+ HA G FV A+G
Sbjct: 113 LAFHMDIKVHACIGGTSFVEDAEG 136
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 213 (80.0 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 39/96 (40%), Positives = 63/96 (65%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
++ + TK K ++ +YSDL +R+ I++EFR +++++D LARGIDV+ + +V
Sbjct: 273 VEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLV 332
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 333 INYDLPANKENYIHRIGRGGRFGRKGVAINFVTNED 368
Score = 37 (18.1 bits), Expect = 7.1e-19, Sum P(2) = 7.1e-19
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++ F P Q +L SAT+ +D
Sbjct: 184 IYQIFTLLPPTTQVVLLSATMPND 207
Score = 36 (17.7 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 102 LVLYQLIRKHAMQGVLCFVNTAQG 125
L + I+ HA G FV A+G
Sbjct: 113 LAFHMDIKVHACIGGTSFVEDAEG 136
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 194 (73.4 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 50/125 (40%), Positives = 71/125 (56%)
Query: 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166
LI + VL F T Q A LA+ + TK G K ++A ++ D R K +
Sbjct: 240 LIGSRNWKQVLVFTRTKQCADDLAKEM-------TKD-GVK-SLA-IHGDKSQGAREKAL 289
Query: 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
EF+ K+ ++A+D ARGID++ + VINYE P N + Y+HRIGRTAR G G +V+L
Sbjct: 290 HEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSL 349
Query: 227 VTTHE 231
V+ E
Sbjct: 350 VSPGE 354
Score = 59 (25.8 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 14 DTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
D Y P Q LLFSAT + D K+ + L +PK+
Sbjct: 172 DQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKM 208
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 194 (73.4 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 50/125 (40%), Positives = 71/125 (56%)
Query: 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166
LI + VL F T Q A LA+ + TK G K ++A ++ D R K +
Sbjct: 240 LIGSRNWKQVLVFTRTKQCADDLAKEM-------TKD-GVK-SLA-IHGDKSQGAREKAL 289
Query: 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
EF+ K+ ++A+D ARGID++ + VINYE P N + Y+HRIGRTAR G G +V+L
Sbjct: 290 HEFKEGKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSL 349
Query: 227 VTTHE 231
V+ E
Sbjct: 350 VSPGE 354
Score = 59 (25.8 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 14 DTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
D Y P Q LLFSAT + D K+ + L +PK+
Sbjct: 172 DQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKM 208
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 199 (75.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG+DV+ + V
Sbjct: 262 DNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVF 317
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 318 NYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
Score = 54 (24.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P Q +LFSAT+ D +KL + + +P++ E T DT
Sbjct: 177 PGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEV-TVDT 218
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 199 (75.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 38/95 (40%), Positives = 61/95 (64%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
DN+ KG G N AE++ D+ +R ++++ FR KI ++A+D ARG+DV+ + V
Sbjct: 262 DNL--KGLG--YNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAARGLDVDGVTHVF 317
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ P++++ YIHRIGRT R G G ++T V +
Sbjct: 318 NYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKD 352
Score = 54 (24.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P Q +LFSAT+ D +KL + + +P++ E T DT
Sbjct: 177 PGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEV-TVDT 218
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 204 (76.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 45/125 (36%), Positives = 75/125 (60%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL + G K + E++ +L QR
Sbjct: 436 IVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLM--------GLK--VGELHGNLSQTQR 485
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ +K Y+HR+GRTAR G+ G
Sbjct: 486 LESLRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGR 545
Query: 223 SVTLV 227
SV+LV
Sbjct: 546 SVSLV 550
Score = 57 (25.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT+S + + L +SL QP ++F +
Sbjct: 380 QTMLFSATMSEEVKDLASVSLKQPVRIFVN 409
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 211 (79.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 422 IVAALLMRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 471
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 472 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 531
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 532 SVSLVGEEE 540
Score = 48 (22.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 395
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 211 (79.3 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 422 IVAALLTRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 471
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 472 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 531
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 532 SVSLVGEEE 540
Score = 48 (22.0 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 366 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 395
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 211 (79.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 443 IVAALLTRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 492
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 493 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 552
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 553 SVSLVGEEE 561
Score = 48 (22.0 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 387 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 416
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 210 (79.0 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 47/129 (36%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 453 IVAALLTRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 502
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 503 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAGR 562
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 563 SVSLVGEDE 571
Score = 48 (22.0 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 397 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 426
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 195 (73.7 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 43/133 (32%), Positives = 76/133 (57%)
Query: 100 KPLVLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158
+P +L L + QG + F + + HRL R++ + + + AE++ +L
Sbjct: 422 RPAILLSLCTRVFNQGGTIIFCRSKKEVHRL-RIIFGLSD---------LKAAELHGNLS 471
Query: 159 FDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
+QR +Q+FR +++ ++ASD +RG+D+ + VINY P+N+ YIHR+GRTAR G
Sbjct: 472 QEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAG 531
Query: 219 RQGTSVTLVTTHE 231
G S + +T ++
Sbjct: 532 MDGKSCSFITDND 544
Score = 63 (27.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P+ Q +LFSATL+ + + L +LSL QP
Sbjct: 365 PTNRQTMLFSATLNDEVKTLAKLSLQQP 392
>MGI|MGI:2385884 [details] [associations]
symbol:Ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 27"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2385884 GO:GO:0005524
GO:GO:0005634 EMBL:CH466551 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH OrthoDB:EOG4NVZJV
EMBL:AK134274 EMBL:AK138442 EMBL:AL591711 EMBL:BC011321
EMBL:BC024730 EMBL:BC026381 IPI:IPI00122038 IPI:IPI00230236
RefSeq:NP_694705.2 UniGene:Mm.295031 ProteinModelPortal:Q921N6
SMR:Q921N6 PhosphoSite:Q921N6 PaxDb:Q921N6 PRIDE:Q921N6
Ensembl:ENSMUST00000018143 Ensembl:ENSMUST00000150571 GeneID:228889
KEGG:mmu:228889 UCSC:uc008nza.1 InParanoid:Q3UUG2 NextBio:379240
Bgee:Q921N6 CleanEx:MM_DDX27 Genevestigator:Q921N6
GermOnline:ENSMUSG00000017999 Uniprot:Q921N6
Length = 760
Score = 209 (78.6 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 45/129 (34%), Positives = 75/129 (58%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL + + + E++ +L QR
Sbjct: 419 IVAALLMRTFTDHVMLFTQTKKQAHRMHILLGLLG----------LQVGELHGNLSQTQR 468
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ ++ F+ +ID++VA+D ARG+D+E + VIN+ P+ +K Y+HR+GRTAR GR G
Sbjct: 469 LEALRRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGRAGR 528
Query: 223 SVTLVTTHE 231
SV+LV E
Sbjct: 529 SVSLVGEEE 537
Score = 48 (22.0 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 363 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 392
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 203 (76.5 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 44/128 (34%), Positives = 77/128 (60%)
Query: 99 LKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLK 158
L+P +L L ++ + + F + AH++ R++ + +N E++ L
Sbjct: 490 LRPAMLIYLCKELFHRRTIIFFRSKAFAHKM-RVIFGL---------LSLNATEIHGSLS 539
Query: 159 FDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
+QR + +++FR K + ++A+D +RGID++ I+VVINYEAP + Y+HR+GRTAR G
Sbjct: 540 QEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAG 599
Query: 219 RQGTSVTL 226
R G ++TL
Sbjct: 600 RSGRAITL 607
Score = 52 (23.4 bits), Expect = 4.2e-18, Sum P(2) = 4.2e-18
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q +LFSAT++ + L +LSL +P
Sbjct: 434 PKSRQTMLFSATMTDKVDDLIRLSLNRP 461
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 207 (77.9 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 48/149 (32%), Positives = 84/149 (56%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T ++++ LT KP VL LI+++ Q VL F T GA++L + H++ +
Sbjct: 220 STAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLVFTKTKHGANKLTK---HLE---AE 273
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
G + A ++ + R K + F+ + ++VA+D ARGID++ + V+N++ P+
Sbjct: 274 G----LTAAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVNFDLPN 329
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRTAR G G +++LV E
Sbjct: 330 VPEDYVHRIGRTARAGNTGQALSLVCADE 358
Score = 40 (19.1 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 20 PSRPQRLLFSATLSHDPE 37
P Q LLFSAT S PE
Sbjct: 183 PKDRQNLLFSATFS--PE 198
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 199 (75.1 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 48/151 (31%), Positives = 77/151 (50%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T + L K L L L+ + A Q + F T R+A +L +
Sbjct: 253 KYQTVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRAL---- 308
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G G ++ L R + +FR R D++VA+D ARG+D+ ++DVV N++
Sbjct: 309 --GFGA----IPLHGQLSQSARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDL 362
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR G+ G +++ VT ++
Sbjct: 363 PMDSKTYIHRVGRTARAGKSGVAISFVTQYD 393
Score = 47 (21.6 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P LFSAT+S E L + SL P
Sbjct: 218 PRTRHTYLFSATMSTKVESLQRASLSNP 245
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 204 (76.9 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 45/116 (38%), Positives = 69/116 (59%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL G + + E++ +L QR + ++ F+ +ID
Sbjct: 428 VMLFTQTKKQAHRMHILL------GLMG----LRVGELHGNLSQAQRLEALRRFKDEQID 477
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ K Y+HR+GRTAR GR G SV+LV E
Sbjct: 478 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 533
Score = 49 (22.3 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 359 QTMLFSATMTEEVKDLASVSLKNPTRIFVN 388
Score = 42 (19.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 29 SATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSE 68
+ TL EK+ Q FQ K G +T+ SE
Sbjct: 78 ATTLDEKIEKVRQKRKFQEKEAKQAKVKDGNAETEDNQSE 117
>UNIPROTKB|E1C187 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AADN02019007
IPI:IPI00822640 Ensembl:ENSGALT00000011297 ArrayExpress:E1C187
Uniprot:E1C187
Length = 759
Score = 204 (76.9 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 45/116 (38%), Positives = 69/116 (59%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
V+ F T + AHR+ LL G + + E++ +L QR + ++ F+ +ID
Sbjct: 429 VMLFTQTKKQAHRMHILL------GLMG----LRVGELHGNLSQAQRLEALRRFKDEQID 478
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++VA+D ARG+D+E + VIN+ P+ K Y+HR+GRTAR GR G SV+LV E
Sbjct: 479 ILVATDVAARGLDIEGVKTVINFTMPNTTKHYVHRVGRTARAGRAGRSVSLVGEEE 534
Score = 49 (22.3 bits), Expect = 6.8e-18, Sum P(2) = 6.8e-18
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 360 QTMLFSATMTEEVKDLASVSLKNPTRIFVN 389
Score = 42 (19.8 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 29 SATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSE 68
+ TL EK+ Q FQ K G +T+ SE
Sbjct: 78 ATTLDEKIEKVRQKRKFQEKEAKQAKVKDGNAETEDNQSE 117
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 189 (71.6 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
Identities = 49/152 (32%), Positives = 76/152 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T EL ++ +K L LI+ +H ++ F NT + L +L N
Sbjct: 215 TVEELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLREF-NF 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T ++S +K QR + +F+ +++A+D ARG+D+ + VVIN+
Sbjct: 274 PT---------ISLHSMMKQRQRFANLAKFKSNVFKILIATDVAARGLDIPTVQVVINHN 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K YIHR+GRTAR GR G S+TLVT ++
Sbjct: 325 TPGLPKIYIHRVGRTARAGRNGVSITLVTQYD 356
Score = 56 (24.8 bits), Expect = 9.2e-18, Sum P(2) = 9.2e-18
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P++ Q LLFSATL+ ++L +++ +P
Sbjct: 177 PAKRQTLLFSATLTDTLQQLQSIAMNRP 204
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 201 (75.8 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 34/79 (43%), Positives = 58/79 (73%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
++ AE++ + QR + ++ FR K+ ++A+D +RG+D++ +D VINYEAP +++ Y
Sbjct: 525 LSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEIY 584
Query: 208 IHRIGRTARGGRQGTSVTL 226
+HR+GRTAR GR GT++TL
Sbjct: 585 VHRVGRTARAGRSGTAITL 603
Score = 51 (23.0 bits), Expect = 9.9e-18, Sum P(2) = 9.9e-18
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
T P Q +LFSAT++ + L ++ L +P
Sbjct: 428 TLPKSRQTMLFSATMTSSVDNLIRVGLNKP 457
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 185 (70.2 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 50/146 (34%), Positives = 77/146 (52%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
T PA+ +E ++ L P + R+ A++ V+ N G R + +D VA
Sbjct: 211 TRPAQTAETISQFVVKL-PTNDGKA-RRTALRRVIEATNVKNGIVFCNRKVE-VDIVAAS 267
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ A ++ DL R++ +Q FR K+ L+VASD ARG+D+ ++ V N+ P
Sbjct: 268 LTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARGLDIPDVGHVFNFGPPP 327
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
+ Y+HRIGRT R GR G S T+VT
Sbjct: 328 KDEDYVHRIGRTGRAGRTGESYTVVT 353
Score = 62 (26.9 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P+ Q LLFSAT D ++L + PK V PA T +T
Sbjct: 178 PANRQTLLFSATFPTDIQRLAKTFQKDPKKI-EVTRPAQTAET 219
>ASPGD|ASPL0000072637 [details] [associations]
symbol:AN4903 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:BN001303 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AACD01000084 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 RefSeq:XP_662507.1 ProteinModelPortal:Q5B3H7
EnsemblFungi:CADANIAT00005498 GeneID:2872706 KEGG:ani:AN4903.2
HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW Uniprot:Q5B3H7
Length = 525
Score = 186 (70.5 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 46/149 (30%), Positives = 74/149 (49%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLI--RKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
K T P L + L+ L+ + + + F NT + A L RLL + +
Sbjct: 316 KDTVPPTLRTTYVQVPLTHREAFLHVLLSTESNITKSAIVFTNTTKSADLLERLLRSLGH 375
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ ++S L +RN + FR ++VA+D +RG+D+ ++ +V+N+
Sbjct: 376 ----------RVTSLHSLLPQSERNSNLARFRASAARVLVATDVASRGLDIPSVSLVVNF 425
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
E P N Y+HR+GRTAR GR G +VTLV
Sbjct: 426 EVPRNPDDYVHRVGRTARAGRTGEAVTLV 454
Score = 59 (25.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 15 TFLTYPSRPQRLLFSATLSHDPEKLHQLSLF--QPKLFTSVVEPAGTGDTQPT 65
+FL PS+ Q LLF+ATL+ + L + +P +F + + PT
Sbjct: 270 SFLPGPSQRQTLLFTATLTPEVRALKSMPQTPGKPPIFVTEISTEAKDTVPPT 322
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 204 (76.9 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 49/159 (30%), Positives = 87/159 (54%)
Query: 72 DNLSSGFIG-KFTTPAELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
D + +G + ++ + +KLT C T + K + + L+R L FV + A +L
Sbjct: 330 DEIGMVCVGERNSSNTSVKQKLTYCGTEDGKKIAIRNLLRTSFKPPALVFVQSKDRAVQL 389
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
+LL ID+ + + + S +R++ ++ FRR +I ++V ++ L RG+D+
Sbjct: 390 VKLLSAIDS--------NLKVDSINSGKSDKERDETMERFRRGEIWVLVCTELLGRGLDL 441
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
++ +VINY+ P +I YIHR+GRT R G+ G +VT T
Sbjct: 442 SDVGLVINYDLPTSIVSYIHRVGRTGRAGKSGHAVTYFT 480
Score = 41 (19.5 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 28 FSATLSHDPEK 38
FSAT SH+ EK
Sbjct: 313 FSATFSHEVEK 323
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 186 (70.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 50/149 (33%), Positives = 79/149 (53%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K + P ++ + L T K +L +I Q L F+ T GA A+L+ ++
Sbjct: 217 KASKP-KIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGA---AKLVSQLEK-- 270
Query: 141 TKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G +AE ++S D R KI+ +F+ KI +VA+ ARG+D+ + VINY+
Sbjct: 271 -RGI-----VAESIHSGRAQDIREKILNDFKSGKIKFLVATAIAARGLDIGELSRVINYD 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
P + YIHRIGRT R G G +++LV+
Sbjct: 325 LPAQVDDYIHRIGRTGRAGASGEAISLVS 353
Score = 52 (23.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q LLFSAT+S + L + ++ +P
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKP 208
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 190 (71.9 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 43/125 (34%), Positives = 72/125 (57%)
Query: 107 LIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKII 166
L+ + + FV T + R+ LL + G K + ++ S L QR + +
Sbjct: 387 LVTRTFQTNTIVFVRTKKDCQRMQILLGLL--------GIK--VGQMQSSLTQGQRIESL 436
Query: 167 QEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
+F++ +ID++V++D +RG+D+E + VIN P +IK+YIHR+GRTAR G+ G S++L
Sbjct: 437 SKFKKAEIDVLVSTDLASRGLDIEGVQTVINMNMPKSIKQYIHRVGRTARAGKAGRSISL 496
Query: 227 VTTHE 231
V E
Sbjct: 497 VGEDE 501
Score = 57 (25.1 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLF 50
Q LLFSAT++ + ++L +SL +P K+F
Sbjct: 327 QTLLFSATMTEEIDELASMSLQKPVKIF 354
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 192 (72.6 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 46/149 (30%), Positives = 82/149 (55%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K ++ + LTT + K +L LI+++ L F+ T GA A+L+ ++
Sbjct: 211 KNAASTQIDQWLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGA---AKLVSQLEK-- 265
Query: 141 TKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G +AE + + R +++ +F+ K+ +VA+ ++RGID++ ++ VINY+
Sbjct: 266 -RGI-----VAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD YIHRIGRT R G QG +++ V+
Sbjct: 320 LPDEADDYIHRIGRTGRAGNQGEAISFVS 348
Score = 48 (22.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSL 44
P + Q LLFSATLS + L + ++
Sbjct: 176 PEQRQNLLFSATLSKQVKALAKTAI 200
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 192 (72.6 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 46/149 (30%), Positives = 82/149 (55%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K ++ + LTT + K +L LI+++ L F+ T GA A+L+ ++
Sbjct: 211 KNAASTQIDQWLTTVDKDRKSALLSHLIKENNWAQALIFIQTKHGA---AKLVSQLEK-- 265
Query: 141 TKGAGTKMNIAEVYSDLKFDQ-RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G +AE + + R +++ +F+ K+ +VA+ ++RGID++ ++ VINY+
Sbjct: 266 -RGI-----VAEAFHSGRSQAIREQLLIDFKAGKVPFLVATGVVSRGIDIDALERVINYD 319
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVT 228
PD YIHRIGRT R G QG +++ V+
Sbjct: 320 LPDEADDYIHRIGRTGRAGNQGEAISFVS 348
Score = 48 (22.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSL 44
P + Q LLFSATLS + L + ++
Sbjct: 176 PEQRQNLLFSATLSKQVKALAKTAI 200
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 195 (73.7 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ + IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 277 DNVITVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 333
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ +++D QR+ + FR KI +++ + LARGID
Sbjct: 334 KELFHEL---IYEG----INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 386
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 387 KGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 425
Score = 46 (21.3 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 247 FLACTSHKVKRAMFSATFAYDVEQWCKLNL 276
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 196 (74.1 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 44/132 (33%), Positives = 77/132 (58%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K +L QLI++ Q VL F T GA+RLA+ L + ++ A ++ +
Sbjct: 230 KSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAE----------ISAAAIHGNKSQ 279
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R K + +F+ ++ ++VA+D ARG+D++ + V+N++ P+ + Y+HRIGRT R G
Sbjct: 280 GARTKALADFKSGEVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGA 339
Query: 220 QGTSVTLVTTHE 231
G +V+LV++ E
Sbjct: 340 TGQAVSLVSSEE 351
Score = 45 (20.9 bits), Expect = 3.8e-17, Sum P(2) = 3.8e-17
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
P++ Q L+FSAT S + +L
Sbjct: 176 PAKRQNLMFSATFSDEIREL 195
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 194 (73.4 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 41/131 (31%), Positives = 72/131 (54%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLA--RLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160
V Y+L ++G++ +N+ + R +D V + ++ D+
Sbjct: 217 VYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQR 276
Query: 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220
+R + I+ F+ K +L+VA+D ARG+D+ ++ VIN++ P N + YIHRIGRT R GR+
Sbjct: 277 ERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGRE 336
Query: 221 GTSVTLVTTHE 231
G ++TL+ E
Sbjct: 337 GKAITLINYRE 347
Score = 43 (20.2 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 18 TYPSRPQRLLFSATL 32
T +R Q LLFSATL
Sbjct: 170 TLTNRQQTLLFSATL 184
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 194 (73.4 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 41/131 (31%), Positives = 72/131 (54%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLA--RLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160
V Y+L ++G++ +N+ + R +D V + ++ D+
Sbjct: 217 VYYELPETEKIEGLVSILNSELPIQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQR 276
Query: 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220
+R + I+ F+ K +L+VA+D ARG+D+ ++ VIN++ P N + YIHRIGRT R GR+
Sbjct: 277 ERTQTIKSFKAGKTELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGRE 336
Query: 221 GTSVTLVTTHE 231
G ++TL+ E
Sbjct: 337 GKAITLINYRE 347
Score = 43 (20.2 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 18 TYPSRPQRLLFSATL 32
T +R Q LLFSATL
Sbjct: 170 TLTNRQQTLLFSATL 184
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 178 (67.7 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 47/152 (30%), Positives = 79/152 (51%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T +L ++ +K L LI+ +H ++ F NT + L +L N
Sbjct: 215 TVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKF-NF 273
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
T +A ++S +K +R + +F+ +++A+D +RG+D+ + VVIN+
Sbjct: 274 PT--------VA-LHSMMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHN 324
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K YIHR+GRTAR GRQG ++TLVT ++
Sbjct: 325 TPGLPKIYIHRVGRTARAGRQGQAITLVTQYD 356
Score = 62 (26.9 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
P+R Q LLFSATL+ +L L+ QP F P T
Sbjct: 177 PARRQTLLFSATLTDTLRELQSLATNQP-FFWEAQAPVRT 215
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 193 (73.0 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 44/132 (33%), Positives = 76/132 (57%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP +L +L+++ Q VL F+ T GA+RLA L+ +G + A ++ +
Sbjct: 230 KPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNE------QG----LTAAAIHGNKSQ 279
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + + +F+ ++ ++VA+D ARGID+ + V+N+E P + Y+HRIGRT R G
Sbjct: 280 GARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGE 339
Query: 220 QGTSVTLVTTHE 231
G +++LV+ E
Sbjct: 340 VGKAISLVSAIE 351
Score = 45 (20.9 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
P + Q LLFSAT S + +L
Sbjct: 176 PEKRQNLLFSATFSTEIREL 195
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 193 (73.0 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 44/132 (33%), Positives = 76/132 (57%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
KP +L +L+++ Q VL F+ T GA+RLA L+ +G + A ++ +
Sbjct: 230 KPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNE------QG----LTAAAIHGNKSQ 279
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + + +F+ ++ ++VA+D ARGID+ + V+N+E P + Y+HRIGRT R G
Sbjct: 280 GARTRALADFKAGEVRILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGE 339
Query: 220 QGTSVTLVTTHE 231
G +++LV+ E
Sbjct: 340 VGKAISLVSAIE 351
Score = 45 (20.9 bits), Expect = 3.9e-17, Sum P(2) = 3.9e-17
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
P + Q LLFSAT S + +L
Sbjct: 176 PEKRQNLLFSATFSTEIREL 195
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 193 (73.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 41/151 (27%), Positives = 77/151 (50%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
++ T L + K L L+ +HA + F T ++A +L +
Sbjct: 251 RYKTVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLG--- 307
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
M ++ + ++R + +F+ + +++V +D ARG+D+ ++D+VINY+
Sbjct: 308 -------MQAVPLHGQMSQEKRLGSLNKFKSKAREILVCTDVAARGLDIPHVDMVINYDM 360
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K Y+HR+GRTAR GR G ++T+VT ++
Sbjct: 361 PSQSKDYVHRVGRTARAGRSGIAITVVTQYD 391
Score = 46 (21.3 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ KL + SL P
Sbjct: 216 PRERRTYLFSATMTKKVSKLERASLRDP 243
>UNIPROTKB|I3LQ10 [details] [associations]
symbol:LOC100626268 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 Ensembl:ENSSSCT00000028964 OMA:RYLVALC
Uniprot:I3LQ10
Length = 684
Score = 196 (74.1 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 45/126 (35%), Positives = 73/126 (57%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ L+ + V+ F T + AHR+ LL G + + E++ +L QR
Sbjct: 451 IVAALLMRTFTDHVMLFTQTKKQAHRMHILL------GLMG----LQVGELHGNLSQTQR 500
Query: 163 N-KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
+ + F+ +ID++VA+D ARG+D+E + VIN+ P+ IK Y+HR+GRTAR GR G
Sbjct: 501 XLEALWRFKDEQIDILVATDVAARGLDIEGVKTVINFTMPNTIKHYVHRVGRTARAGRAG 560
Query: 222 TSVTLV 227
SV+L+
Sbjct: 561 RSVSLL 566
Score = 48 (22.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT++ + + L +SL P ++F +
Sbjct: 395 QTMLFSATMTDEVKDLASVSLKNPVRIFVN 424
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 193 (73.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ S IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 261 DNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 317
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ ++++ QR+ + FR KI +++ + LARGID
Sbjct: 318 KELFHEL---IYEG----INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 370
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G ++T T
Sbjct: 371 KGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 409
Score = 46 (21.3 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 231 FLACTSHKVRRAMFSATFAYDVEQWCKLNL 260
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 189 (71.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 46/145 (31%), Positives = 80/145 (55%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
+ +++ T + K +L LI++H L FV+ + LA+ L + +G
Sbjct: 228 IEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKL------SKRGIS-- 279
Query: 148 MNIAEVY-SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
AEV+ D R +++ F+ +I +++A+D ARGID++ + VVIN++ P +
Sbjct: 280 ---AEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPAD 336
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGR+ R G G +VTL++ HE
Sbjct: 337 YMHRIGRSGRAGEAGLAVTLIS-HE 360
Score = 47 (21.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + Q LLFSAT + L L QP
Sbjct: 188 PRQKQTLLFSATFPEEVRALTTKLLHQP 215
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 189 (71.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 46/145 (31%), Positives = 80/145 (55%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
+ +++ T + K +L LI++H L FV+ + LA+ L + +G
Sbjct: 228 IEQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKL------SKRGIS-- 279
Query: 148 MNIAEVY-SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
AEV+ D R +++ F+ +I +++A+D ARGID++ + VVIN++ P +
Sbjct: 280 ---AEVFHGDKAQGARTRVLDGFKNGEISVLIATDIAARGIDIDKLPVVINFDLPRSPAD 336
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGR+ R G G +VTL++ HE
Sbjct: 337 YMHRIGRSGRAGEAGLAVTLIS-HE 360
Score = 47 (21.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + Q LLFSAT + L L QP
Sbjct: 188 PRQKQTLLFSATFPEEVRALTTKLLHQP 215
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 192 (72.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 45/144 (31%), Positives = 79/144 (54%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
L +++ T + K VL LI++ + L FVN HH +++A K A
Sbjct: 230 LVQRVFTVNKGEKTAVLAHLIQQEQWRQALIFVNAK----------HHCEHLAEKLAKRG 279
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ A + D +R++++ F+ I++++A+D ARG+D+E + VVIN+ P + Y
Sbjct: 280 ITAAVFHGDKGQSERSRVLDGFKAGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDY 339
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
+HRIGR+ R G G +++L+ HE
Sbjct: 340 MHRIGRSGRAGEVGLAISLID-HE 362
Score = 44 (20.5 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + Q LLFSAT L Q L P
Sbjct: 190 PKKKQTLLFSATFPEQVTTLTQELLNNP 217
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 192 (72.6 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 37/96 (38%), Positives = 61/96 (63%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D++ QR+ I++EFR +++A+D LARGIDV+ + +V
Sbjct: 277 VDWLTDKLTARDFTVSAMHGDMEQAQRDVIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 336
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 337 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 372
Score = 42 (19.8 bits), Expect = 5.5e-17, Sum P(2) = 5.5e-17
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F P Q +L SAT+ D
Sbjct: 188 IYDIFQLLPQSTQVVLLSATMPQD 211
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 201 (75.8 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
IG + +S + + K +L ++++ + VL F T GA LA D
Sbjct: 205 IGTQAPASSVSHSVYPVKNHQKTPLLIEILKTTETKSVLIFARTKYGAENLA------DE 258
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
++ G T A + +L ++R+ +++ FRR ++VA+D ARG+D+++I VINY
Sbjct: 259 ISRAGFTT----ASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLDIDHISHVINY 314
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ PD + Y HRIGRT R R G +++LVT
Sbjct: 315 DMPDTPEDYTHRIGRTGRFDRTGQALSLVT 344
Score = 39 (18.8 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 24 QRLLFSATLSHDPEKL 39
Q LLFSAT+ + KL
Sbjct: 177 QTLLFSATMPPEVRKL 192
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 195 (73.7 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ S IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 370 DNVVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFKPPVLVFV---QSIERA 426
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ ++++ QR+ + FR KI +++ + LARGID
Sbjct: 427 KELFHEL---IYEG----INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 479
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 480 KGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518
Score = 46 (21.3 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 340 FLACTSPKVRRAMFSATFAYDVEQWCKLNL 369
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 195 (73.7 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ S IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 370 DNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 426
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ ++++ QR+ + FR KI +++ + LARGID
Sbjct: 427 KELFHEL---IYEG----INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 479
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 480 KGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFT 518
Score = 46 (21.3 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 340 FLACTSPKVRRAMFSATFAYDVEQWCKLNL 369
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 195 (73.7 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ + IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 371 DNVITVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 427
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ +++D QR+ + FR KI +++ + LARGID
Sbjct: 428 KELFHEL---IYEG----INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 480
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 481 KGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 519
Score = 46 (21.3 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 341 FLACTSHKVRRAMFSATFAYDVEQWCKLNL 370
>SGD|S000004903 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0008186 "RNA-dependent ATPase
activity" evidence=IDA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0005635 "nuclear envelope" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=IEA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004903 GO:GO:0005524
GO:GO:0005635 GO:GO:0005730 GO:GO:0003723 EMBL:BK006946
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030686 GO:GO:0006364 GO:GO:0004004 EMBL:X80836
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179
OMA:KDGYRSY GeneTree:ENSGT00680000100037 OrthoDB:EOG4ZKNVS
PIR:S47451 RefSeq:NP_014017.1 ProteinModelPortal:Q03532 SMR:Q03532
DIP:DIP-4396N IntAct:Q03532 MINT:MINT-482816 STRING:Q03532
PaxDb:Q03532 PeptideAtlas:Q03532 EnsemblFungi:YMR290C GeneID:855335
KEGG:sce:YMR290C CYGD:YMR290c NextBio:979064 Genevestigator:Q03532
GermOnline:YMR290C Uniprot:Q03532
Length = 505
Score = 180 (68.4 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 39/150 (26%), Positives = 82/150 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T L + C ++ + L+L+ ++++ + ++ F+++ A LL++ID
Sbjct: 259 STADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCNSVKYYAELLNYID----- 313
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + E++ K +R EF + +++ +D ARG+D+ +D +I ++ PD
Sbjct: 314 -----LPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDWIIQFDPPD 368
Query: 203 NIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ + YIHR+GRTARG + +G S+ +T +E
Sbjct: 369 DPRDYIHRVGRTARGTKGKGKSLMFLTPNE 398
Score = 58 (25.5 bits), Expect = 7.4e-17, Sum P(2) = 7.4e-17
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
Q +LFSAT + E L ++SL LF +VV P + + AD L G++
Sbjct: 223 QSMLFSATQTTKVEDLARISLRPGPLFINVV---------PETDNSTADGLEQGYV 269
Score = 36 (17.7 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 37 EKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEA 69
EK +L L QP L +E G T TS +A
Sbjct: 42 EKFEELKLSQPTL--KAIEKMGF--TTMTSVQA 70
>ZFIN|ZDB-GENE-021212-1 [details] [associations]
symbol:ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
55" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-021212-1 GO:GO:0007275 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AF506203 EMBL:BC059534 IPI:IPI00493927 RefSeq:NP_775336.1
UniGene:Dr.16883 ProteinModelPortal:Q8JHJ2 STRING:Q8JHJ2
GeneID:286745 KEGG:dre:286745 InParanoid:Q8JHJ2 NextBio:20806420
ArrayExpress:Q8JHJ2 Uniprot:Q8JHJ2
Length = 593
Score = 188 (71.2 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 47/148 (31%), Positives = 75/148 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TPA+LS T C K L +R+H + L F +T + L V K
Sbjct: 238 TPAKLSNYYTMCRAEEKFNTLVAFLRQHKHEKQLVFFSTCACVEYFGKALE----VLVKN 293
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++I ++ +K +RNKI +FR K ++V +D +ARGID+ ++ V+ Y+ P +
Sbjct: 294 ----VSIHCIHGKMKH-KRNKIFADFRALKSGILVCTDVMARGIDIPEVNWVLQYDPPSS 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G QG ++ + E
Sbjct: 349 ASSFVHRCGRTARIGNQGNALVFLLPME 376
Score = 52 (23.4 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSE 68
+T L Y + +R LFSAT + + EKL + L P T + Q T ++
Sbjct: 186 NTILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAASSVQKTPAK 241
>WB|WBGene00019219 [details] [associations]
symbol:H20J04.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14778 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:FO080156
RefSeq:NP_001040789.1 ProteinModelPortal:Q2WF63 SMR:Q2WF63
PaxDb:Q2WF63 EnsemblMetazoa:H20J04.4b GeneID:186756
KEGG:cel:CELE_H20J04.4 UCSC:H20J04.4a CTD:186756 WormBase:H20J04.4b
InParanoid:Q2WF63 NextBio:932876 ArrayExpress:Q2WF63 Uniprot:Q2WF63
Length = 561
Score = 185 (70.2 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
Identities = 41/153 (26%), Positives = 80/153 (52%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIR----KHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+T L +K C +K L +++ K+ V+ F T + LA +
Sbjct: 303 STVDRLEQKYVVCPVAVKDAYLVYVVKNYSEKNPKSSVMIFAQTCRECQALAYMF----- 357
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+G G + + ++S + QR + FR + + +++ +D +RG+D+ ++D+V+N+
Sbjct: 358 ---EGLGFR--VGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGLDIPHVDLVVNH 412
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P K YIHR+GR+AR GR G++++ VT ++
Sbjct: 413 NVPQCPKTYIHRVGRSARAGRFGSALSFVTQYD 445
Score = 54 (24.1 bits), Expect = 8.2e-17, Sum P(2) = 8.2e-17
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLF 50
F + + Q LL SAT++++ LH++S +P F
Sbjct: 260 FESISEKRQTLLLSATITNNINMLHRVSTRKPYFF 294
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 190 (71.9 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 43/151 (28%), Positives = 79/151 (52%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 232 KYQTVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 291
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + ++R + +F+ + +++A+D +RG+D+ ++DVVIN++
Sbjct: 292 IP----------LHGQMSQNKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDI 341
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G S+T VT ++
Sbjct: 342 PTHSKDYIHRVGRTARAGRSGKSITFVTQYD 372
Score = 45 (20.9 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 197 PRDRKTFLFSATMTKQVQKLQRAALKNP 224
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 183 (69.5 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
E+ E+L + K L L++++ VL F++ A +A+ L K AG
Sbjct: 244 EIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRL-------VK-AG- 294
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
+N A ++ + R++ + +F+ +I ++VA+D +ARGI V+ + VVIN + P +
Sbjct: 295 -INAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPV 353
Query: 207 YIHRIGRTARGGRQGTSVTLV 227
Y+HRIGRTAR G +G +++LV
Sbjct: 354 YVHRIGRTARAGAKGLAISLV 374
Score = 52 (23.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLS 43
P R Q LLFSATL PE L L+
Sbjct: 202 PKRKQTLLFSATL---PEALDSLA 222
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 183 (69.5 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 46/141 (32%), Positives = 80/141 (56%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
E+ E+L + K L L++++ VL F++ A +A+ L K AG
Sbjct: 244 EIEEQLYLVNKGSKAQALIALLKQYQWPQVLVFISARDDADAIAKRL-------VK-AG- 294
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
+N A ++ + R++ + +F+ +I ++VA+D +ARGI V+ + VVIN + P +
Sbjct: 295 -INAAALHGEKDQTVRSQTLADFKADRIQVLVATDLMARGIHVDALPVVINLDLPTSAPV 353
Query: 207 YIHRIGRTARGGRQGTSVTLV 227
Y+HRIGRTAR G +G +++LV
Sbjct: 354 YVHRIGRTARAGAKGLAISLV 374
Score = 52 (23.4 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLS 43
P R Q LLFSATL PE L L+
Sbjct: 202 PKRKQTLLFSATL---PEALDSLA 222
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 190 (71.9 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ QR+ I++EFR +++A+D LARGIDV+ + +V
Sbjct: 275 VDWLTDKLTARDFTVSAMHGDMDQAQRDLIMKEFRSGSSRVLIATDLLARGIDVQQVSLV 334
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 335 INYDLPANRENYIHRIGRGGRFGRKGVAINFVTADD 370
Score = 42 (19.8 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F P Q +L SAT+ D
Sbjct: 186 IYDIFQLLPQSTQVVLLSATMPQD 209
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 190 (71.9 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 43/151 (28%), Positives = 81/151 (53%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T L ++ K L ++ + A + F +T + ++A +L ++
Sbjct: 326 KYQTVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNL---- 381
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G G + D+ +R + +F++ ++VA+D ARG+D+ ++D+VINY+
Sbjct: 382 --GFGA----IPINGDMDQGKRLASLNKFKQGTKSILVATDVAARGLDIPSVDLVINYDV 435
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N K+Y+HR+GRTAR G G ++T+VT ++
Sbjct: 436 PTNSKEYVHRVGRTARAGNSGRAITIVTQYD 466
Score = 48 (22.0 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P LFSAT++ KL + SL P + V T DT
Sbjct: 291 PKERNTYLFSATMTSKVAKLQRASLVNP-VKVQVASKYQTVDT 332
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 193 (73.0 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 53/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ S IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 369 DNVISVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 425
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ ++++ QR+ + FR KI +++ + LARGID
Sbjct: 426 KELFHEL---IYEG----INVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 478
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G ++T T
Sbjct: 479 KGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFT 517
Score = 46 (21.3 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 339 FLACTSHKVRRAMFSATFAYDVEQWCKLNL 368
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 187 (70.9 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 46/135 (34%), Positives = 73/135 (54%)
Query: 97 TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSD 156
+N PL L+ ++ K + VL F T GA + + L A A ++S
Sbjct: 230 SNKVPL-LFNILTKADYEKVLIFCKTKYGADIIVKALEKASITA----------ASLHSG 278
Query: 157 LKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTAR 216
R + +Q F+ + ++VA+D ARGIDV+NI +VINY P++ + YIHRIGRTAR
Sbjct: 279 KTQAVREEALQNFKDSTLRVLVATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTAR 338
Query: 217 GGRQGTSVTLVTTHE 231
G+ G +++ ++
Sbjct: 339 AGKSGMAISFAVEND 353
Score = 45 (20.9 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q LLFSAT+ + E L + L P
Sbjct: 178 PKSRQTLLFSATMPAEIEILAEAILTDP 205
Score = 41 (19.5 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 68 EAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQL 107
+A D++ G TP L + + T N K L ++ L
Sbjct: 116 QAQVDSIELGLDILVATPGRLLDLIETGDINFKALEVFVL 155
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 191 (72.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 51/152 (33%), Positives = 80/152 (52%)
Query: 79 IGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+G + AE E+ L S K + +L++K VL FV Q R L H +
Sbjct: 370 VGARNSAAETVEQELLFVGSETGKLTAMRELVKKGFAPPVLVFV---QSIERAKELFHEL 426
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+G +N+ +++D QR+ ++ FR KI +++ + LARGID + +++VI
Sbjct: 427 ---IYEG----INVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVI 479
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
NY+ P + +YIHRIGRT R G G +VT T
Sbjct: 480 NYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFT 511
Score = 48 (22.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 24 QRLLFSATLSHDPEKLHQLSL 44
+R FSAT +HD E+ +L+L
Sbjct: 342 RRAFFSATFAHDVEEWCKLNL 362
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 191 (72.3 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 51/152 (33%), Positives = 80/152 (52%)
Query: 79 IGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
+G + AE E+ L S K + +L++K VL FV Q R L H +
Sbjct: 371 VGARNSAAETVEQELLFVGSETGKLTAMRELVKKGFAPPVLVFV---QSIERAKELFHEL 427
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+G +N+ +++D QR+ ++ FR KI +++ + LARGID + +++VI
Sbjct: 428 ---IYEG----INVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARGIDFKGVNMVI 480
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
NY+ P + +YIHRIGRT R G G +VT T
Sbjct: 481 NYDLPTSAVEYIHRIGRTGRAGHTGKAVTFFT 512
Score = 48 (22.0 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 24 QRLLFSATLSHDPEKLHQLSL 44
+R FSAT +HD E+ +L+L
Sbjct: 343 RRAFFSATFAHDVEEWCKLNL 363
>UNIPROTKB|G4N9X9 [details] [associations]
symbol:MGG_03229 "ATP-dependent RNA helicase dbp6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001234
GO:GO:0008026 KO:K14807 RefSeq:XP_003716750.1
EnsemblFungi:MGG_03229T0 GeneID:2676463 KEGG:mgr:MGG_03229
Uniprot:G4N9X9
Length = 896
Score = 218 (81.8 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 63/212 (29%), Positives = 107/212 (50%)
Query: 23 PQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSG---FI 79
P +LL A DPE Q ++ L +S T+ ++ G+D SS
Sbjct: 615 PSQLLEFAIKVRDPE---QKPMYLVDLLSSD-HVRSRSPTKQVVNDNGSDTSSSDDSDTS 670
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
T+ +E + + + K + A+ VL F + + A RL+RLL + +
Sbjct: 671 SDATSDSESDSDSDSEAESGKRSASKPPVEDSAIDSVLIFTKSNESALRLSRLL---EII 727
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
A + + I + S + +R K+I +++ K+ ++VASD +ARG+D+ N+D V+NY+
Sbjct: 728 APRQVASC--IGTLTSTTRTSERKKVINQYKSGKLRILVASDLVARGLDLPNLDHVVNYD 785
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++ Y+HR+GRTAR GR G + T T E
Sbjct: 786 MPPSVRTYVHRVGRTARAGRAGRAWTFFTKTE 817
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 182 (69.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/132 (32%), Positives = 76/132 (57%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
+ L+ + + K+ Q VL F T GA+RL++ L D +++ A ++ +
Sbjct: 244 RELLSFMIGSKNWRQ-VLVFTRTKHGANRLSQQLES-DGLSS---------AAIHGNKSQ 292
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + + +F++ KI ++VA+D ARG+D++ + VIN+E PD K Y+HR+GRT R
Sbjct: 293 AARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN 352
Query: 220 QGTSVTLVTTHE 231
G +++LV+ E
Sbjct: 353 DGVAISLVSGDE 364
Score = 51 (23.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
P Q LLFSAT S + ++L L P L
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPAL 218
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 182 (69.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 43/132 (32%), Positives = 76/132 (57%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
+ L+ + + K+ Q VL F T GA+RL++ L D +++ A ++ +
Sbjct: 244 RELLSFMIGSKNWRQ-VLVFTRTKHGANRLSQQLES-DGLSS---------AAIHGNKSQ 292
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
R + + +F++ KI ++VA+D ARG+D++ + VIN+E PD K Y+HR+GRT R
Sbjct: 293 AARMRALTQFKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASN 352
Query: 220 QGTSVTLVTTHE 231
G +++LV+ E
Sbjct: 353 DGVAISLVSGDE 364
Score = 51 (23.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
P Q LLFSAT S + ++L L P L
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPAL 218
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 190 (71.9 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 46/173 (26%), Positives = 83/173 (47%)
Query: 59 TGDTQPTSSEAGADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLC 118
T Q A D + K+ T +L + + K L ++ + A +
Sbjct: 264 TKKVQKLQRAALQDPVKCSVSSKYATVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMV 323
Query: 119 FVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178
F T R+A LL ++ A ++ + ++R + +F+ + +++
Sbjct: 324 FCGTCNNTQRVALLLRNLGITAIP----------LHGQMSQNKRLGALNKFKSKSRSVLL 373
Query: 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
A+D +RG+D+ ++D VIN++ P + K YIHR+GRTAR GR G S+T VT ++
Sbjct: 374 ATDVASRGLDIPHVDCVINFDIPTHSKDYIHRVGRTARAGRSGKSITFVTQYD 426
Score = 46 (21.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 14 DTFLTYPSRPQR-LLFSATLSHDPEKLHQLSLFQP 47
D L R +R LFSAT++ +KL + +L P
Sbjct: 244 DKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDP 278
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 198 (74.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 51/128 (39%), Positives = 70/128 (54%)
Query: 109 RKHAMQGVLCFVNTAQGAHRLARLLH-HIDNVATKGAG--TKMNIA--EVYSDLKFDQRN 163
R HA+ V Q R A ++ A K A T+ A V+ DL R
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQLARE 310
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
K ++ FR ID++VA+D ARGID++++ VINY+ P++ K Y+HRIGRT R GR G +
Sbjct: 311 KALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGVA 370
Query: 224 VTLVTTHE 231
VTLV E
Sbjct: 371 VTLVDWDE 378
Score = 38 (18.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 20 PSRPQRLLFSATLSHDP 36
P+ Q +LFSAT+ DP
Sbjct: 201 PADRQSMLFSATMP-DP 216
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 195 (73.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 33/72 (45%), Positives = 55/72 (76%)
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
D+RNK I+ F++ ++ ++VA+D ARG+D+++I VIN++ P + YIHRIGRT R G+
Sbjct: 294 DKRNKAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAGK 353
Query: 220 QGTSVTLVTTHE 231
+GT+++LV H+
Sbjct: 354 KGTAISLVEAHD 365
Score = 37 (18.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 22 RPQRLLFSATL 32
R Q +LFSATL
Sbjct: 190 RKQTMLFSATL 200
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 181 (68.8 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 42/149 (28%), Positives = 76/149 (51%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT + +++ K +L + IR ++ + F T GA D V +
Sbjct: 220 TTAGRIEQRVCFVEQPEKASLLIEKIRDPELRSAIVFTRTKHGA----------DGVVKR 269
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
A ++ ++ + QR K ++ F+ ++ ++VA+D ARGI V+ + VINY+ PD
Sbjct: 270 LAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATDIAARGIHVDALTHVINYDLPD 329
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++++HRIGRTAR G G +++ + E
Sbjct: 330 VPEQFVHRIGRTARAGNSGVAISFCSRDE 358
Score = 53 (23.7 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 17/40 (42%), Positives = 19/40 (47%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
PS+ Q L FSAT+ E L L P SV PA T
Sbjct: 183 PSKRQTLFFSATMPKAVESLAATFLRNPAE-VSVAPPATT 221
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 185 (70.2 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 31/79 (39%), Positives = 55/79 (69%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+ AE++ + +QR K ++ FR ++ ++A+D +RG+D++ ++ VINYEAP + + Y
Sbjct: 568 LKAAELHGSMSQEQRIKSVESFRDGNVNFLLATDLASRGLDIKGVETVINYEAPQSHEIY 627
Query: 208 IHRIGRTARGGRQGTSVTL 226
+HR+GRTAR GR G + T+
Sbjct: 628 VHRVGRTARAGRSGRACTI 646
Score = 56 (24.8 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 18 TYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
T P Q +LFSAT++ +KL ++ L +P
Sbjct: 471 TIPKSRQTMLFSATMTDSVDKLIRVGLNRP 500
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 172 (65.6 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++S +K QR + +F+ +++A+D ARG+D+ + VVIN+ P K YIHR+G
Sbjct: 278 LHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVG 337
Query: 213 RTARGGRQGTSVTLVTTHE 231
RTAR GR G S+T+VT ++
Sbjct: 338 RTARAGRNGISITMVTQYD 356
Score = 59 (25.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE 55
P+R Q LLFSATL+ +L L++ +P + + E
Sbjct: 177 PARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASE 212
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 192 (72.6 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA L D+ N+ ++ D+ +RNK+
Sbjct: 486 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDH----------NLGLLHGDMDQSERNKV 535
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I EF+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 536 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 595
Query: 226 LVT 228
L+T
Sbjct: 596 LLT 598
Score = 46 (21.3 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 425 PDR-QTLLFSATFRKKIEKLARDILIDP 451
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 195 (73.7 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
DN+ + IG + E E+ L S K L + +L++K VL FV Q R
Sbjct: 368 DNVITVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 424
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ +++D QR+ + FR KI +++ + LARGID
Sbjct: 425 KELFHEL---IYEG----INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 477
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 478 KGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 516
Score = 40 (19.1 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSA ++D E+ +L+L
Sbjct: 338 FLACTSHKVRRAMFSAIFAYDVEQWCKLNL 367
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 189 (71.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 52/159 (32%), Positives = 84/159 (52%)
Query: 72 DNLSSGFIGKFTTPAELSEK--LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRL 129
D++ + +G + E E+ L S K L + +L++K VL FV Q R
Sbjct: 367 DSVITVSVGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFV---QSIERA 423
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
L H + +G +N+ +++D QR+ + FR KI +++ + LARGID
Sbjct: 424 KELFHEL---IYEG----INVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDF 476
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ +++VINY+ P + +YIHRIGRT R G +G +VT T
Sbjct: 477 KGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFT 515
Score = 46 (21.3 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 16 FLTYPS-RPQRLLFSATLSHDPEKLHQLSL 44
FL S + +R +FSAT ++D E+ +L+L
Sbjct: 337 FLACTSHKVKRAMFSATFAYDVEQWCRLNL 366
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 191 (72.3 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 47/152 (30%), Positives = 78/152 (51%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
G T A++ ++ K + +L+ + FV T Q RLA D +
Sbjct: 232 GSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLA------DWL 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G A ++ D+ R + + ++ ID++VA+D +ARG+DV I V NY+
Sbjct: 286 CARG----FKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++ YIHRIGRT R GR+G ++ LV T++
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 373
Score = 45 (20.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P QR+LFSAT+ +++ + L P+ V+ AG+ T
Sbjct: 198 PESAQRVLFSATMPPMVKEIVERFLRNPEC----VDVAGSNQT 236
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 191 (72.3 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 47/152 (30%), Positives = 78/152 (51%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
G T A++ ++ K + +L+ + FV T Q RLA D +
Sbjct: 232 GSNQTVAKVEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLA------DWL 285
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYE 199
+G A ++ D+ R + + ++ ID++VA+D +ARG+DV I V NY+
Sbjct: 286 CARG----FKAAALHGDIPQSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYD 341
Query: 200 APDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P +++ YIHRIGRT R GR+G ++ LV T++
Sbjct: 342 IPFDVESYIHRIGRTGRAGRKGKAILLVRTNQ 373
Score = 45 (20.9 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P QR+LFSAT+ +++ + L P+ V+ AG+ T
Sbjct: 198 PESAQRVLFSATMPPMVKEIVERFLRNPEC----VDVAGSNQT 236
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 186 (70.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 41/151 (27%), Positives = 78/151 (51%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 231 KYQTVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 290
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + +R + +F+ + +++A+D +RG+D+ ++DVV+N++
Sbjct: 291 IP----------LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++T VT ++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371
Score = 44 (20.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 186 (70.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 41/151 (27%), Positives = 78/151 (51%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 231 KYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 290
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + +R + +F+ + +++A+D +RG+D+ ++DVV+N++
Sbjct: 291 IP----------LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++T VT ++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371
Score = 44 (20.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 186 (70.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 41/151 (27%), Positives = 78/151 (51%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 231 KYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 290
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + +R + +F+ + +++A+D +RG+D+ ++DVV+N++
Sbjct: 291 IP----------LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 340
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++T VT ++
Sbjct: 341 PTHSKDYIHRVGRTARAGRSGKAITFVTQYD 371
Score = 44 (20.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 196 PRDRKTFLFSATMTKKVQKLQRAALKNP 223
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 186 (70.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 41/151 (27%), Positives = 78/151 (51%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 233 KYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 292
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + +R + +F+ + +++A+D +RG+D+ ++DVV+N++
Sbjct: 293 IP----------LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 342
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++T VT ++
Sbjct: 343 PTHSKDYIHRVGRTARAGRSGKAITFVTQYD 373
Score = 44 (20.5 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 198 PRDRKTFLFSATMTKKVQKLQRAALKNP 225
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 188 (71.2 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 31/79 (39%), Positives = 57/79 (72%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
+ ++ D+K ++R+K++ +FR +++++D ARGIDV+ + +VINY+ P+ I+ YIH
Sbjct: 292 VVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGIDVQQVSLVINYDLPEIIENYIH 351
Query: 210 RIGRTARGGRQGTSVTLVT 228
RIGR+ R GR+G ++ +T
Sbjct: 352 RIGRSGRFGRKGVAINFIT 370
Score = 39 (18.8 bits), Expect = 3.2e-16, Sum P(2) = 3.2e-16
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F P Q ++ SAT++ D
Sbjct: 189 IYDIFAKLPKNCQVVVVSATMNKD 212
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 172 (65.6 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++S +K QR + +F+ +++A+D ARG+D+ + VVIN+ P K YIHR+G
Sbjct: 281 LHSMMKQRQRFAALAKFKSSIFKILIATDVAARGLDIPTVQVVINHNTPGLPKIYIHRVG 340
Query: 213 RTARGGRQGTSVTLVTTHE 231
RTAR GR G S+T+VT ++
Sbjct: 341 RTARAGRNGISITMVTQYD 359
Score = 59 (25.8 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE 55
P+R Q LLFSATL+ +L L++ +P + + E
Sbjct: 180 PARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASE 215
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 185 (70.2 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 46/129 (35%), Positives = 72/129 (55%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
+L LI + + FV T + AHRL LL + G + E++ +L QR
Sbjct: 393 ILASLICRTFHDHCMVFVQTKKQAHRLHILLGLL--------GVRAG--ELHGNLTQQQR 442
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ +++F+ +ID+++A+D ARG+D+ + VIN+ P + YIHR+GRTAR GR G
Sbjct: 443 LESLKKFKEEQIDVLIATDVAARGLDIVGVKTVINFVMPITTEHYIHRVGRTARAGRAGI 502
Query: 223 SVTLVTTHE 231
SV+L E
Sbjct: 503 SVSLAGEKE 511
Score = 52 (23.4 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTS 52
Q +LFSAT+S + L +SL +P K+F +
Sbjct: 337 QTMLFSATMSEQVKDLAAVSLDKPIKVFVN 366
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 186 (70.5 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 41/151 (27%), Positives = 78/151 (51%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + + K L ++ + A + F +T R A LL ++ A
Sbjct: 257 KYQTVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA 316
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + +R + +F+ + +++A+D +RG+D+ ++DVV+N++
Sbjct: 317 IP----------LHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDI 366
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++T VT ++
Sbjct: 367 PTHSKDYIHRVGRTARAGRSGKAITFVTQYD 397
Score = 44 (20.5 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + +L P
Sbjct: 222 PRDRKTFLFSATMTKKVQKLQRAALKNP 249
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 185 (70.2 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
++ ++ D+ QR+ ++ EFR +++ +D LARGIDV+ + +VINY+ P N + YIH
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGR R GR+G S+ VT +
Sbjct: 345 RIGRGGRFGRKGVSINFVTNDD 366
Score = 41 (19.5 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F P Q +L SAT+ D
Sbjct: 182 IYDIFQLLPPTAQVVLLSATMPQD 205
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 173 (66.0 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 43/129 (33%), Positives = 69/129 (53%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
+L +I K Q VL F T GA+ LA L+ D + + A ++ + R
Sbjct: 235 LLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNK-DGIRS---------AAIHGNKSQGAR 284
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ + +F+ I ++VA+D ARG+D+E + V+NYE P+ + Y+HRIGRT R G
Sbjct: 285 TRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGE 344
Query: 223 SVTLVTTHE 231
+++LV E
Sbjct: 345 ALSLVCVDE 353
Score = 56 (24.8 bits), Expect = 4.5e-16, Sum P(2) = 4.5e-16
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P++ Q LLFSAT S D + L + L P
Sbjct: 178 PAKRQNLLFSATFSDDIKALAEKLLHNP 205
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 182 (69.1 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 33/96 (34%), Positives = 62/96 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R++I++EFR + +++ +D ARGIDV+ + +V
Sbjct: 278 VDWLTEKMREANFTVSSMHGDMPQKERDEIMKEFRAGQSRVLITTDVWARGIDVQQVSLV 337
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P+N + YIHRIGR+ R GR+G ++ V + +
Sbjct: 338 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 373
Score = 44 (20.5 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 189 IYDVYRYLPPATQVVLISATLPHE 212
>DICTYBASE|DDB_G0292010 [details] [associations]
symbol:DDB_G0292010 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292010 GO:GO:0005524
EMBL:AAFI02000187 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
ProtClustDB:CLSZ2846571 RefSeq:XP_629765.1
ProteinModelPortal:Q54DV7 EnsemblProtists:DDB0184159 GeneID:8628441
KEGG:ddi:DDB_G0292010 InParanoid:Q54DV7 OMA:VESSCKP Uniprot:Q54DV7
Length = 777
Score = 211 (79.3 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 59/210 (28%), Positives = 111/210 (52%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q L+FSAT P+ + + K T+ ++ + +S+ G+ ++ S +
Sbjct: 494 PDR-QTLMFSATF---PQTMQDAA---KKWLTNPLKIR----VKSSSTNQGSTSIISKNV 542
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNV 139
+ P EK +T + ++ +L+ ++ +L FVNT + + +L I+ +
Sbjct: 543 KQVVKPIAEKEKSKYLTTFINSIMKKELLLRNRSL-ILIFVNTIKS---VKPILTVIEKM 598
Query: 140 ATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE-NIDVVINY 198
+ K ++ D+K +R+ +I F+ KI ++VA+D L RGI + N+ VINY
Sbjct: 599 CDQFRERKYKCGAIHGDMKQFERDSVIDNFKSGKISILVATDILGRGIHIGGNLRFVINY 658
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
+ P ++++Y+HR+GRT R G +G ++TL T
Sbjct: 659 DFPSSLEQYVHRVGRTGRQGNKGHALTLFT 688
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 192 (72.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA L D+ N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDH----------NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I EF+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 192 (72.6 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 44/123 (35%), Positives = 69/123 (56%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA L D+ N+ ++ D+ +RNK+
Sbjct: 493 RLVEFTSSGSVLLFVTKKANAEELANNLKQEDH----------NLGLLHGDMDQSERNKV 542
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I EF+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 543 ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 602
Query: 226 LVT 228
L+T
Sbjct: 603 LLT 605
Score = 46 (21.3 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 432 PDR-QTLLFSATFRKKIEKLARDILIDP 458
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 182 (69.1 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 38/151 (25%), Positives = 79/151 (52%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K+ T +L + K + L ++ + A + F +T + A +L + A
Sbjct: 268 KYQTVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAA 327
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + ++R + +F+ + +++++D +RG+D+ ++DVV+N++
Sbjct: 328 IP----------LHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHVDVVVNFDI 377
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + K YIHR+GRTAR GR G ++TLV+ ++
Sbjct: 378 PTHSKDYIHRVGRTARAGRSGKAITLVSQYD 408
Score = 48 (22.0 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ +KL + SL P
Sbjct: 233 PRERRTFLFSATMTKKVKKLQRASLKDP 260
>CGD|CAL0001062 [details] [associations]
symbol:orf19.3704 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0000466 "maturation of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001062 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000217 EMBL:AACQ01000216 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_711043.1 RefSeq:XP_711056.1 ProteinModelPortal:Q59MW2
STRING:Q59MW2 GeneID:3647328 GeneID:3647350 KEGG:cal:CaO19.11188
KEGG:cal:CaO19.3704 KO:K14807 Uniprot:Q59MW2
Length = 606
Score = 209 (78.6 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 50/145 (34%), Positives = 86/145 (59%)
Query: 82 FTTPAELSE---KLTTCSTNLKPLVLYQ-LIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
FT P LSE L +LKPL+L + LI + + VL F + + + RL LL +
Sbjct: 406 FTVPVTLSEFKIHLGVAKNSLKPLILTKFLISTNKLSNVLIFTKSNESSIRLTELLISL- 464
Query: 138 NVATKGAGTKMNIAEVYS-DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ + IA + S + + R+KI+++F +++++++ +D +ARGIDV +I VI
Sbjct: 465 ---FQKLSINLKIAFINSTNNRTSIRSKILKQFSNQEVNILITTDLIARGIDVASITDVI 521
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQG 221
NY+ P++ ++Y+HR+GRTAR + G
Sbjct: 522 NYDLPNSSREYVHRVGRTARANQVG 546
>UNIPROTKB|F1MW45 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 IPI:IPI00726158 UniGene:Bt.74315
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:DAAA02045235
Ensembl:ENSBTAT00000009556 Uniprot:F1MW45
Length = 601
Score = 184 (69.8 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R H + L F +T + L + KG
Sbjct: 238 TPSRLENHYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETL----VKG 293
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P N
Sbjct: 294 ----VKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 48 (22.0 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + + TQ T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS 240
>UNIPROTKB|Q2NL08 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 EMBL:BC111255 IPI:IPI00726158
RefSeq:NP_001039472.1 UniGene:Bt.74315 PRIDE:Q2NL08 GeneID:508581
KEGG:bta:508581 CTD:57696 HOGENOM:HOG000268803 HOVERGEN:HBG107796
InParanoid:Q2NL08 KO:K14809 OrthoDB:EOG4WH8KN NextBio:20868584
Uniprot:Q2NL08
Length = 601
Score = 184 (69.8 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 44/148 (29%), Positives = 74/148 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R H + L F +T + L + KG
Sbjct: 238 TPSRLENHYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALETL----VKG 293
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P N
Sbjct: 294 ----VKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 48 (22.0 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + + TQ T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS 240
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 183 (69.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 44/142 (30%), Positives = 81/142 (57%)
Query: 87 ELSEKLTTCS-TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
++S+++ C + K +L +L+ + + V+ F T RLA L + +G
Sbjct: 219 DISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKL------SAQGFA 272
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
T A + +LK RN+I+ +F R + ++V +D +RG+D+ N+ +VIN++ P +
Sbjct: 273 T----AALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAE 328
Query: 206 KYIHRIGRTARGGRQGTSVTLV 227
+Y+HRIGRT R G +G +++LV
Sbjct: 329 EYVHRIGRTGRAGAKGDAISLV 350
Score = 44 (20.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 22 RPQRLLFSATLSH 34
R Q L+FSATL H
Sbjct: 179 RRQTLMFSATLDH 191
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 183 (69.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 44/142 (30%), Positives = 81/142 (57%)
Query: 87 ELSEKLTTCS-TNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
++S+++ C + K +L +L+ + + V+ F T RLA L + +G
Sbjct: 219 DISQRIYLCDHLDHKEALLSRLLSDESHKQVIIFTATRADTERLAAKL------SAQGFA 272
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
T A + +LK RN+I+ +F R + ++V +D +RG+D+ N+ +VIN++ P +
Sbjct: 273 T----AALSGELKQAARNQIMDQFARGQQQILVTTDVASRGLDLLNVSLVINFDMPKFAE 328
Query: 206 KYIHRIGRTARGGRQGTSVTLV 227
+Y+HRIGRT R G +G +++LV
Sbjct: 329 EYVHRIGRTGRAGAKGDAISLV 350
Score = 44 (20.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 22 RPQRLLFSATLSH 34
R Q L+FSATL H
Sbjct: 179 RRQTLMFSATLDH 191
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 187 (70.9 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
++ +++DL +R+ I++EFR +++++D LARGIDV+ + +VINY+ P N + YIH
Sbjct: 289 VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 348
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGR R GR+G ++ VT +
Sbjct: 349 RIGRGGRFGRKGVAINFVTDRD 370
Score = 37 (18.1 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
+++ F P Q +L SAT+ D
Sbjct: 186 IYNIFRLLPETTQIVLLSATMPQD 209
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 187 (70.9 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 34/82 (41%), Positives = 57/82 (69%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
++ +++DL +R+ I++EFR +++++D LARGIDV+ + +VINY+ P N + YIH
Sbjct: 289 VSAIHADLPQAERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIH 348
Query: 210 RIGRTARGGRQGTSVTLVTTHE 231
RIGR R GR+G ++ VT +
Sbjct: 349 RIGRGGRFGRKGVAINFVTDRD 370
Score = 37 (18.1 bits), Expect = 6.5e-16, Sum P(2) = 6.5e-16
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
+++ F P Q +L SAT+ D
Sbjct: 186 IYNIFRLLPETTQIVLLSATMPQD 209
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 186 (70.5 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 33/96 (34%), Positives = 62/96 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ ++ +R+ I+Q+FR+ +++++D ARGIDV+ + +V
Sbjct: 277 VDWLTDKMREANFTVSSMHGEMPQKERDSIMQDFRQGNSRVLISTDVWARGIDVQQVSLV 336
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR+ R GR+G ++ VT+ +
Sbjct: 337 INYDLPTNRENYIHRIGRSGRFGRKGVAINFVTSDD 372
Score = 38 (18.4 bits), Expect = 6.8e-16, Sum P(2) = 6.8e-16
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q ++ SATL +D
Sbjct: 188 IYDVYRYLPPATQVVVVSATLPYD 211
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 186 (70.5 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 280 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 339
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 340 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 375
Score = 37 (18.1 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 175 (66.7 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 42/150 (28%), Positives = 75/150 (50%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHIDNVAT 141
P + K +T+ L++ +R+ +L V T + R ++D+V
Sbjct: 202 PTHIEIKAAGITTDKIEHTLFE-VREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYR 260
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+ +++ + + R ++ +FR+ K +VA+D ARGID++NI VINY+ P
Sbjct: 261 QLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HR GRT R G G ++T +T +E
Sbjct: 321 LEKESYVHRTGRTGRAGNSGKAITFITPYE 350
Score = 52 (23.4 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P++ +LFSATL D E+L + + P
Sbjct: 175 PTKRMTMLFSATLPEDVERLSRTYMNAP 202
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 175 (66.7 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 42/150 (28%), Positives = 75/150 (50%)
Query: 85 PAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR---LARLLHHIDNVAT 141
P + K +T+ L++ +R+ +L V T + R ++D+V
Sbjct: 202 PTHIEIKAAGITTDKIEHTLFE-VREEEKLSLLKDVTTIENPDSCIIFCRTQENVDHVYR 260
Query: 142 KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP 201
+ +++ + + R ++ +FR+ K +VA+D ARGID++NI VINY+ P
Sbjct: 261 QLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDIDNITHVINYDIP 320
Query: 202 DNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HR GRT R G G ++T +T +E
Sbjct: 321 LEKESYVHRTGRTGRAGNSGKAITFITPYE 350
Score = 52 (23.4 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P++ +LFSATL D E+L + + P
Sbjct: 175 PTKRMTMLFSATLPEDVERLSRTYMNAP 202
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 186 (70.5 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 380
Score = 37 (18.1 bits), Expect = 9.5e-16, Sum P(2) = 9.5e-16
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 196 IYDIFQKLNSNTQVVLLSATMPSD 219
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 189 (71.6 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
Score = 39 (18.8 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 63 QPTSSEAGADNLSSGFIGKFTTP 85
Q + S GA + SSGF GK P
Sbjct: 33 QQSHSAFGATSSSSGF-GKSAPP 54
>TIGR_CMR|CPS_0174 [details] [associations]
symbol:CPS_0174 "ATP-dependent RNA helicase RhlB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006402
"mRNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0006401 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY ProtClustDB:PRK04837
RefSeq:YP_266942.1 ProteinModelPortal:Q48AH1 STRING:Q48AH1
GeneID:3521970 KEGG:cps:CPS_0174 PATRIC:21463765
BioCyc:CPSY167879:GI48-277-MONOMER Uniprot:Q48AH1
Length = 428
Score = 185 (70.2 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 44/143 (30%), Positives = 77/143 (53%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + +SE+L S K +L LI + + + F NT H ++ H++
Sbjct: 224 TNSRISEELFYPSNEDKMTLLQTLIEEDWPEKAIVFANTK---HVCEKVFDHLN------ 274
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K+ + + D+ +R KI++EF +D++VA+D ARG+ + ++ V NY+ PD+
Sbjct: 275 -ADKIRVGLLTGDVPQKKRLKILEEFTDGTVDILVATDVAARGLHIPSVTHVFNYDLPDD 333
Query: 204 IKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G +++L
Sbjct: 334 CQDYVHRIGRTGRAGETGHAISL 356
Score = 39 (18.8 bits), Expect = 9.9e-16, Sum P(2) = 9.9e-16
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 20 PSRPQRL--LFSATLSHDPEKLHQLSLFQPKLFTSV-VEP 56
P +RL LFSATLS ++L + P TSV VEP
Sbjct: 184 PPATERLSMLFSATLSFRVKELAFDHMNDP---TSVEVEP 220
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 189 (71.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
Score = 39 (18.8 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 63 QPTSSEAGADNLSSGFIGKFTTP 85
Q + S GA + SSGF GK P
Sbjct: 33 QQSHSAFGATSSSSGF-GKSAPP 54
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 189 (71.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
Score = 43 (20.2 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 63 QPTSSEAGADNLSSGFIGKFTTPAEL 88
Q + S GA + SSGF GK T P +L
Sbjct: 33 QQSHSAFGATSSSSGF-GK-TAPPQL 56
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 189 (71.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
Score = 39 (18.8 bits), Expect = 5.4e-15, Sum P(2) = 5.4e-15
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 63 QPTSSEAGADNLSSGFIGKFTTP 85
Q + S GA + SSGF GK P
Sbjct: 33 QQSHSAFGATSSSSGF-GKSAPP 54
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 189 (71.6 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 490 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 539
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 540 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 599
Query: 226 LVT 228
L+T
Sbjct: 600 LLT 602
Score = 46 (21.3 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 184 (69.8 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 44/151 (29%), Positives = 76/151 (50%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K++T L ++ + K L ++ + + F T G LA +L + A
Sbjct: 228 KYSTVDTLKQQYRFVAAKYKDCYLVYILSEMPESTSMIFTRTCDGTRFLALVLRSLGFRA 287
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
+G + +R + +F+ + +++V +D +RG+D+ ++DVVINY+
Sbjct: 288 IPISG----------QMTQSKRLGALNKFKAGECNILVCTDVASRGLDIPSVDVVINYDI 337
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P N K YIHR+GRTAR GR G ++LV +E
Sbjct: 338 PTNSKDYIHRVGRTARAGRSGVGISLVNQYE 368
Score = 41 (19.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P + LFSAT++ KL + L P
Sbjct: 193 PLERKTFLFSATMTKKVRKLQRACLRNP 220
>UNIPROTKB|Q8NHQ9 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
OMA:CACVEYW EMBL:AC055713 EMBL:AC117503 EMBL:BC030020 EMBL:AL833756
EMBL:AB046815 IPI:IPI00185361 RefSeq:NP_065987.1 UniGene:Hs.286173
ProteinModelPortal:Q8NHQ9 SMR:Q8NHQ9 STRING:Q8NHQ9
PhosphoSite:Q8NHQ9 DMDM:296439376 PaxDb:Q8NHQ9 PRIDE:Q8NHQ9
Ensembl:ENST00000238146 GeneID:57696 KEGG:hsa:57696 UCSC:uc001ufi.3
GeneCards:GC12P124086 HGNC:HGNC:20085 neXtProt:NX_Q8NHQ9
PharmGKB:PA134984021 InParanoid:Q8NHQ9 ChiTaRS:DDX55
GenomeRNAi:57696 NextBio:64547 ArrayExpress:Q8NHQ9 Bgee:Q8NHQ9
CleanEx:HS_DDX55 Genevestigator:Q8NHQ9 GermOnline:ENSG00000111364
Uniprot:Q8NHQ9
Length = 600
Score = 186 (70.5 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 45/148 (30%), Positives = 74/148 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R H + L F +T + L V KG
Sbjct: 238 TPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALE----VLVKG 293
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P N
Sbjct: 294 ----VKIMCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 43 (20.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPA-GTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + SV E Q T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNP-VRVSVKEKGVAASSAQKTPS 240
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 186 (70.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 35/96 (36%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 302 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 361
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ +VT +
Sbjct: 362 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEED 397
Score = 37 (18.1 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D F S Q +L SAT+ D
Sbjct: 213 IYDIFQKLNSNTQVVLLSATMPSD 236
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 173 (66.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 43/149 (28%), Positives = 79/149 (53%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT +S+ + K +L +LI K Q VL F T A L + L+ +D + ++
Sbjct: 214 TTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVFTATRDAADTLVKELN-LDGIPSE 272
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
V+ + R + ++EF K+ ++VA++ ARG+D+ +++ V+N++ P
Sbjct: 273 ---------VVHGEKAQGSRRRALREFVSGKVRVLVATEVAARGLDIPSLEYVVNFDLPF 323
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGRT R G+ G +++ V+ E
Sbjct: 324 LAEDYVHRIGRTGRAGKSGVAISFVSREE 352
Score = 51 (23.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
Q LLFSAT S +KL + +P++ ++ + T DT
Sbjct: 181 QNLLFSATFSSAVKKLANEMMIKPQVISADKQNT-TADT 218
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 188 (71.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 43/123 (34%), Positives = 70/123 (56%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------SNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 188 (71.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 43/141 (30%), Positives = 83/141 (58%)
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNI 150
+ T ST+ K +L LI +A G + F T + A ++ L + ++AT+
Sbjct: 330 IATTSTS-KRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSN--SIATEA------- 379
Query: 151 AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHR 210
++ D+ QR + + FR+ K ++VA+D +RG+D+ N+D+VI+YE P++ + ++HR
Sbjct: 380 --LHGDISQHQRERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
Query: 211 IGRTARGGRQGTSVTLVTTHE 231
GRT R G++G+++ + T+ +
Sbjct: 438 SGRTGRAGKEGSAILMHTSSQ 458
Score = 43 (20.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P++ Q +LFSAT+ +KL + L P
Sbjct: 281 PTKRQSMLFSATMPTWVKKLARKYLDNP 308
>SGD|S000003139 [details] [associations]
symbol:ROK1 "RNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0000447 "endonucleolytic cleavage in
ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0030686
"90S preribosome" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0048254 "snoRNA localization" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000472 "endonucleolytic
cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S
rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000003139
GO:GO:0005524 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:X85757
GO:GO:0030686 GO:GO:0004004 GO:GO:0000447 GO:GO:0000472
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000480
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG OrthoDB:EOG425926 EMBL:Z34901 EMBL:Z72693 PIR:S59649
RefSeq:NP_011344.1 ProteinModelPortal:P45818 SMR:P45818
DIP:DIP-5111N IntAct:P45818 MINT:MINT-483312 STRING:P45818
PaxDb:P45818 PeptideAtlas:P45818 EnsemblFungi:YGL171W GeneID:852704
KEGG:sce:YGL171W CYGD:YGL171w NextBio:972056 Genevestigator:P45818
GermOnline:YGL171W GO:GO:0048254 Uniprot:P45818
Length = 564
Score = 187 (70.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 32/85 (37%), Positives = 59/85 (69%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++N+ ++++ QR++II+ F+ ++ ++ +D LARGID + +++VINY+ P + +
Sbjct: 396 RINVDVIHAERTALQRDRIIERFKTGELWCLICTDVLARGIDFKGVNLVINYDVPGSSQA 455
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT RGGR G ++T T +
Sbjct: 456 YVHRIGRTGRGGRSGKAITFYTKQD 480
Score = 40 (19.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQP-KLFTSVVEPAGTGDTQ 63
++ +FSAT+ + E++ Q + P ++ E A T Q
Sbjct: 307 RKAMFSATIPSNVEEIAQSIMMDPVRVIIGHKEAANTNIEQ 347
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 182 (69.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 37/91 (40%), Positives = 55/91 (60%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D VA + A ++ DL QR + + FR K+ L+VASD ARG+DV ++ V
Sbjct: 265 VDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVASDVAARGLDVPSVSHV 324
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
N++ P + + Y+HRIGRT R GR G ++TL
Sbjct: 325 FNFDVPGHPEDYVHRIGRTGRAGRDGKAITL 355
Score = 42 (19.8 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
F P Q L FSAT++ + E++ L P
Sbjct: 172 FSLTPFTRQTLFFSATMAPEIERITNTFLSAP 203
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 187 (70.9 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 43/123 (34%), Positives = 71/123 (57%)
Query: 106 QLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKI 165
+L+ + VL FV A LA +N+ +G N+ ++ D+ +RNK+
Sbjct: 491 RLVEFTSSGSVLLFVTKKANAEELA------NNLKQEGH----NLGLLHGDMDQSERNKV 540
Query: 166 IQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
I +F+++ I ++VA+D ARG+D+ +I VINY+ +I + HRIGRT R G +G + T
Sbjct: 541 ILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT 600
Query: 226 LVT 228
L+T
Sbjct: 601 LLT 603
Score = 46 (21.3 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 430 PDR-QTLLFSATFRKKIEKLARDILIDP 456
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 180 (68.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 42/132 (31%), Positives = 73/132 (55%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K +L L+++ + FV + H LA L AG +N + ++
Sbjct: 235 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLRE--------AG--INNCYLEGEMVQ 284
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+RN+ I+ +++++VA+D ARGID+ ++ V N++ P + Y+HRIGRTAR GR
Sbjct: 285 GKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGR 344
Query: 220 QGTSVTLVTTHE 231
+GT+++LV H+
Sbjct: 345 KGTAISLVEAHD 356
Score = 43 (20.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 22 RPQRLLFSATLSHD 35
R Q LLFSATL D
Sbjct: 181 RKQTLLFSATLEGD 194
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 189 (71.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 35/76 (46%), Positives = 53/76 (69%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++ D +R+ ++QEFR + ++VA+D ARGIDV+ I+ VINY+ P NI+ Y+HRIG
Sbjct: 390 IHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIG 449
Query: 213 RTARGGRQGTSVTLVT 228
RT R G GT+++ T
Sbjct: 450 RTGRAGATGTAISFFT 465
Score = 37 (18.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLK 100
+LS G TP L + L TNLK
Sbjct: 232 DLSRGSEIVIATPGRLIDMLEIGKTNLK 259
>CGD|CAL0003050 [details] [associations]
symbol:HAS1 species:5476 "Candida albicans" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IGI;ISS] [GO:0042274
"ribosomal small subunit biogenesis" evidence=IGI;ISS] [GO:0030686
"90S preribosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0030687 "preribosome, large subunit precursor" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 GO:GO:0042274
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000012
InterPro:IPR025313 Pfam:PF13959 KO:K13179 EMBL:AACQ01000011
RefSeq:XP_721871.1 RefSeq:XP_722031.1 STRING:Q5AK59 GeneID:3636361
GeneID:3636443 KEGG:cal:CaO19.11444 KEGG:cal:CaO19.3962
Uniprot:Q5AK59
Length = 565
Score = 175 (66.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 38/150 (25%), Positives = 81/150 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T L + C ++ + L+L+ ++++ + ++ F+++ + LL++ID
Sbjct: 324 STADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYID----- 378
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + +++ K +R EF K ++V +D ARG+D+ +D ++ ++ PD
Sbjct: 379 -----LPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPD 433
Query: 203 NIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ + YIHR+GRTARG + +G S+ +T E
Sbjct: 434 DPRDYIHRVGRTARGTQGKGKSLMFLTPSE 463
Score = 52 (23.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
Q +LFSAT + E L ++SL L+ +VV P + AD L G++
Sbjct: 288 QSMLFSATQTTKVEDLARISLRPGPLYINVV---------PEKDVSTADGLEQGYV 334
>UNIPROTKB|Q5AK59 [details] [associations]
symbol:HAS1 "ATP-dependent RNA helicase HAS1"
species:237561 "Candida albicans SC5314" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IGI] [GO:0042274 "ribosomal small
subunit biogenesis" evidence=IGI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0003050
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0042274 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACQ01000012 InterPro:IPR025313 Pfam:PF13959 KO:K13179
EMBL:AACQ01000011 RefSeq:XP_721871.1 RefSeq:XP_722031.1
STRING:Q5AK59 GeneID:3636361 GeneID:3636443 KEGG:cal:CaO19.11444
KEGG:cal:CaO19.3962 Uniprot:Q5AK59
Length = 565
Score = 175 (66.7 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 38/150 (25%), Positives = 81/150 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
+T L + C ++ + L+L+ ++++ + ++ F+++ + LL++ID
Sbjct: 324 STADGLEQGYVVCDSDKRFLLLFSFLKRNVKKKIIVFLSSCNSVKFYSELLNYID----- 378
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
+ + +++ K +R EF K ++V +D ARG+D+ +D ++ ++ PD
Sbjct: 379 -----LPVLDLHGKQKQQKRTNTFFEFCNAKQGILVCTDVAARGLDIPAVDWIVQFDPPD 433
Query: 203 NIKKYIHRIGRTARGGR-QGTSVTLVTTHE 231
+ + YIHR+GRTARG + +G S+ +T E
Sbjct: 434 DPRDYIHRVGRTARGTQGKGKSLMFLTPSE 463
Score = 52 (23.4 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
Q +LFSAT + E L ++SL L+ +VV P + AD L G++
Sbjct: 288 QSMLFSATQTTKVEDLARISLRPGPLYINVV---------PEKDVSTADGLEQGYV 334
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 189 (71.6 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 43/120 (35%), Positives = 68/120 (56%)
Query: 110 KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169
K + +L FV T + A + R L D ++ D + ++R+ ++ +F
Sbjct: 371 KDSKNKILIFVGTKRVADEITRFLRQ-DGWPA---------LSIHGDKQQNERDWVLDQF 420
Query: 170 RRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
+ K ++VA+D +RGIDV NI V+NY+ P+N + YIHRIGRT R G +GT++T TT
Sbjct: 421 KTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTT 480
Score = 37 (18.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 73 NLSSGFIGKFTTPAELSEKLTTCSTNLK 100
+LS G TP L + L + TNL+
Sbjct: 244 DLSRGVEVCIATPGRLIDMLESGKTNLR 271
>UNIPROTKB|P0A8J8 [details] [associations]
symbol:rhlB "RhlB" species:83333 "Escherichia coli K-12"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006401 "RNA
catabolic process" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0006401 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:M87049 GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:M83316 EMBL:X56310
PIR:G65181 RefSeq:NP_418227.1 RefSeq:YP_491659.1
ProteinModelPortal:P0A8J8 SMR:P0A8J8 DIP:DIP-35644N IntAct:P0A8J8
PaxDb:P0A8J8 PRIDE:P0A8J8 EnsemblBacteria:EBESCT00000001927
EnsemblBacteria:EBESCT00000015978 GeneID:12934326 GeneID:948290
KEGG:ecj:Y75_p3395 KEGG:eco:b3780 PATRIC:32123051 EchoBASE:EB0837
EcoGene:EG10844 HOGENOM:HOG000268807 KO:K03732 OMA:HIDGIKY
ProtClustDB:PRK04837 BioCyc:EcoCyc:EG10844-MONOMER
BioCyc:ECOL316407:JW3753-MONOMER Genevestigator:P0A8J8
Uniprot:P0A8J8
Length = 421
Score = 176 (67.0 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 46/143 (32%), Positives = 72/143 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + E+L S K +L LI + + F NT HR + H+ A G
Sbjct: 227 TGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTK---HRCEEIWGHL---AADG 280
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ + D+ +R +I+ EF R +D++VA+D ARG+ + + V NY+ PD+
Sbjct: 281 H----RVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDD 336
Query: 204 IKKYIHRIGRTARGGRQGTSVTL 226
+ Y+HRIGRT R G G S++L
Sbjct: 337 CEDYVHRIGRTGRAGASGHSISL 359
Score = 46 (21.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 11 IMWDTFLTYPSRPQRL--LFSATLSHDPEKL 39
I W F P QRL LFSATLS+ +L
Sbjct: 179 IRW-LFRRMPPANQRLNMLFSATLSYRVREL 208
>DICTYBASE|DDB_G0284017 [details] [associations]
symbol:ddx10 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0284017 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000153_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AAFI02000059 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HSSP:P26196 RefSeq:XP_638786.1 ProteinModelPortal:Q54Q94
STRING:Q54Q94 PRIDE:Q54Q94 EnsemblProtists:DDB0234197
GeneID:8624375 KEGG:ddi:DDB_G0284017 OMA:AMNILIA Uniprot:Q54Q94
Length = 878
Score = 176 (67.0 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 41/149 (27%), Positives = 74/149 (49%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TTP L++ L +K +L+ I+ H ++ F + + R H +
Sbjct: 355 TTPQNLTQTLCVIPLEMKLNMLFSFIKTHLTSKIIVFFASC----KQVRFAHETFKLLNP 410
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
G + ++ +K R ++ ++F ++K + A+D ARG+D ++ VI + PD
Sbjct: 411 GT----TLFPLHGKMKQWTRLEVFEDFCKKKAGTLFATDIAARGLDFPAVEWVIQVDCPD 466
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+I+ YIHR+GRTAR G S+T++ E
Sbjct: 467 DIETYIHRVGRTARNDAPGQSITILLPSE 495
Score = 56 (24.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE 55
P Q LLFSAT + L +LSL +P+ + SV E
Sbjct: 316 PRERQTLLFSATQTKSIRDLARLSLQEPE-YISVYE 350
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 47/161 (29%), Positives = 83/161 (51%)
Query: 71 ADNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLA 130
A N+S TT + ++ S + K L +++ +G++ FV T LA
Sbjct: 204 ATNIS--IAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELA 261
Query: 131 RLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
L +G + + ++ D+ R + +++ + K+D+++A+D ARG+DVE
Sbjct: 262 EKLE------ARGYAS----SPLHGDMNQQARERAVEQLKNGKLDILIATDVAARGLDVE 311
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
I V+NY+ P + + Y+HRIGRT R GR G ++ VT+ E
Sbjct: 312 RIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSRE 352
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 179 (68.1 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 33/92 (35%), Positives = 58/92 (63%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + + +A ++ D+ +R +II+ FR + +++ +D LARGIDV+ + +V
Sbjct: 284 VDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDILARGIDVQQVSLV 343
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P + + YIHRIGR+ R GR+G ++ V
Sbjct: 344 INYDLPIDRENYIHRIGRSGRFGRKGVAINFV 375
Score = 41 (19.5 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
D + P+ Q +L SATL+ D + + + +P
Sbjct: 197 DVYRYLPNGTQIVLVSATLTQDVVSMTEKFMTKP 230
Score = 38 (18.4 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI---DNVATKG 143
+L+E T+ +KP +R+ ++G+ + A + +L I D +A
Sbjct: 18 KLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQ 77
Query: 144 AGT 146
+GT
Sbjct: 78 SGT 80
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 179 (68.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 45/132 (34%), Positives = 67/132 (50%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K + L+ ++ FV T Q LA L KG A + D+
Sbjct: 232 KTSAVLSLLEVEDFDALIMFVRTKQATLDLASALE------AKG----YKAAALNGDIAQ 281
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+QR ++I + ++D+VVA+D ARG+DV I V N + P + + Y+HRIGRT R GR
Sbjct: 282 NQRERVIDSLKDGRLDIVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGR 341
Query: 220 QGTSVTLVTTHE 231
+G ++ LVT E
Sbjct: 342 EGRALLLVTPRE 353
Score = 46 (21.3 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
F P Q +LFSATL + + L PK
Sbjct: 174 FKAMPETRQTVLFSATLPQSIRAIAERHLKDPK 206
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 184 (69.8 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 42/126 (33%), Positives = 75/126 (59%)
Query: 101 PLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFD 160
PL+L L+RK M+ + FVNT + A L L+ D +G D++
Sbjct: 235 PLLL-GLLRKEGMERTMIFVNTKREAEFLDERLNANDFPCRVISG----------DVEQR 283
Query: 161 QRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQ 220
+R KI+++F+ K+ +++A+D +RG+ ++ + VINY+ P + + Y+HRIGRTAR G +
Sbjct: 284 KRLKILEDFKSGKLPIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAE 343
Query: 221 GTSVTL 226
G ++++
Sbjct: 344 GKAISM 349
Score = 37 (18.1 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 19 YPSRPQRLLFSATLS 33
Y R Q L+FSATL+
Sbjct: 179 YDKR-QNLMFSATLN 192
>UNIPROTKB|I3LRT7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000031627 OMA:VGDERTM Uniprot:I3LRT7
Length = 290
Score = 167 (63.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 121 DFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVI 180
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
N++ P I +Y+HRIGRT R G G +++
Sbjct: 181 NFDLPSTIDEYVHRIGRTGRCGNTGRAIS 209
Score = 56 (24.8 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR L+FSAT + ++L L LF +V + G D Q T + G
Sbjct: 37 PSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVG 90
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 170 (64.9 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 527 DFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVI 586
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
N++ P I +Y+HRIGRT R G G +++ T
Sbjct: 587 NFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 619
Score = 58 (25.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR LLFSAT + ++L L LF +V + G D Q T + G
Sbjct: 443 PSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVG 496
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 181 (68.8 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 39/108 (36%), Positives = 63/108 (58%)
Query: 119 FVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVV 178
F NT + A ++A D + +G + + ++ DL R K++++ R + +V
Sbjct: 252 FTNTKKMADQVA------DGLMERG----LKVGRIHGDLSPRDRKKMMKQIRDLEFQYIV 301
Query: 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTL 226
A+D ARGID+E I VINYE P ++ ++HR+GRTAR G G +VT+
Sbjct: 302 ATDLAARGIDIEGISHVINYELPSDLDFFVHRVGRTARAGHSGIAVTI 349
Score = 39 (18.8 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
P Q L+FSAT+ P+KL
Sbjct: 179 PKNLQMLVFSATI---PQKL 195
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 178 (67.7 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 41/126 (32%), Positives = 76/126 (60%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
+L Q+ K ++ + FV+T + RL+ +L D + + NIA ++S R
Sbjct: 293 ILSQMEDK-GIRSAMIFVSTCRTCQRLSLML---DELEVE------NIA-MHSLNSQSMR 341
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
+ +F+ K+ +++A+D +RG+D+ +D+VINY+ P + + Y+HR+GRTAR GR G
Sbjct: 342 LSALSKFKSGKVPILLATDVASRGLDIPTVDLVINYDIPRDPRDYVHRVGRTARAGRGGL 401
Query: 223 SVTLVT 228
+V+++T
Sbjct: 402 AVSIIT 407
Score = 44 (20.5 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
F P Q LLFSAT++ + + L + S F E T DT
Sbjct: 228 FQCLPKSRQTLLFSATMTSNLQALLEHSS-NKAYFYEAYEGLKTVDT 273
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 187 (70.9 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 53/155 (34%), Positives = 82/155 (52%)
Query: 79 IGKFTTPAE-LSEKLTTC-STNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHI 136
IG+ T +E + +KL S K L L Q + VL FV + + A L L
Sbjct: 344 IGRKNTASETVKQKLVFAGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELK-C 402
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+N+ AG ++SDL +R + +FR + +++A+D +ARG+D + I+ VI
Sbjct: 403 ENIR---AGV------IHSDLPPGERENAVDQFRAGEKWVLIATDVIARGMDFKGINCVI 453
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ PD+ YIHRIGR+ R GR G ++T T +
Sbjct: 454 NYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQD 488
Score = 36 (17.7 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 25 RLLFSATLSHDPEKL 39
R LFSATL E+L
Sbjct: 317 RSLFSATLPDSVEEL 331
>GENEDB_PFALCIPARUM|PFF1500c [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA
helicase, putative" species:5833 "Plasmodium falciparum"
[GO:0016070 "RNA metabolic process" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AL844505 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
RefSeq:XP_966291.1 ProteinModelPortal:C6KTE4
EnsemblProtists:PFF1500c:mRNA GeneID:3885813 KEGG:pfa:PFF1500c
EuPathDB:PlasmoDB:PF3D7_0630900 ProtClustDB:CLSZ2514457
Uniprot:C6KTE4
Length = 601
Score = 170 (64.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 40/152 (26%), Positives = 77/152 (50%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K T L + + + L+L+ ++K+ + ++ F N LL++ID +
Sbjct: 359 KIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYID-IP 417
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T ++ K ++R K +F K +++ ++ ARG+D+ N++ +I Y+
Sbjct: 418 TYC---------IHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDP 468
Query: 201 PDNIKKYIHRIGRTARG-GRQGTSVTLVTTHE 231
PD+ K+YIHR+GRT RG G+++ + HE
Sbjct: 469 PDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHE 500
Score = 55 (24.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
P + Q LFSAT + E L +LSL +P +F V T
Sbjct: 324 PKKRQTALFSATQTTKVESLIRLSLQKP-IFIEVTTKIAT 362
>UNIPROTKB|C6KTE4 [details] [associations]
symbol:PFF1500c "DEAD/DEAH box ATP-dependent RNA helicase,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 EMBL:AL844505 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY RefSeq:XP_966291.1
ProteinModelPortal:C6KTE4 EnsemblProtists:PFF1500c:mRNA
GeneID:3885813 KEGG:pfa:PFF1500c EuPathDB:PlasmoDB:PF3D7_0630900
ProtClustDB:CLSZ2514457 Uniprot:C6KTE4
Length = 601
Score = 170 (64.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 40/152 (26%), Positives = 77/152 (50%)
Query: 81 KFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
K T L + + + L+L+ ++K+ + ++ F N LL++ID +
Sbjct: 359 KIATVERLQQGYALVDEDKRFLLLFTFLKKNMSKKIMVFFNNCMSVQFYNDLLNYID-IP 417
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
T ++ K ++R K +F K +++ ++ ARG+D+ N++ +I Y+
Sbjct: 418 TYC---------IHGKKKQNKRLKSFHDFSAAKCAILLCTNVAARGLDIPNVNYIIQYDP 468
Query: 201 PDNIKKYIHRIGRTARG-GRQGTSVTLVTTHE 231
PD+ K+YIHR+GRT RG G+++ + HE
Sbjct: 469 PDDSKEYIHRVGRTCRGQDSNGSAIIFLMKHE 500
Score = 55 (24.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 16/40 (40%), Positives = 21/40 (52%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT 59
P + Q LFSAT + E L +LSL +P +F V T
Sbjct: 324 PKKRQTALFSATQTTKVESLIRLSLQKP-IFIEVTTKIAT 362
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 180 (68.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 151 AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHR 210
A + ++ D+RN I FR +++++A+D ARGIDV +I VIN++ P + Y+HR
Sbjct: 274 AWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHR 333
Query: 211 IGRTARGGRQGTSVTLVTTHE 231
IGRT R G++G +++LV H+
Sbjct: 334 IGRTGRAGKKGIAISLVEAHD 354
Score = 39 (18.8 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 22 RPQRLLFSATL 32
R Q LLFSATL
Sbjct: 180 RKQTLLFSATL 190
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 180 (68.4 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 33/81 (40%), Positives = 54/81 (66%)
Query: 151 AEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHR 210
A + ++ D+RN I FR +++++A+D ARGIDV +I VIN++ P + Y+HR
Sbjct: 274 AWIQGEMPQDRRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHR 333
Query: 211 IGRTARGGRQGTSVTLVTTHE 231
IGRT R G++G +++LV H+
Sbjct: 334 IGRTGRAGKKGIAISLVEAHD 354
Score = 39 (18.8 bits), Expect = 3.4e-15, Sum P(2) = 3.4e-15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 22 RPQRLLFSATL 32
R Q LLFSATL
Sbjct: 180 RKQTLLFSATL 190
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 175 (66.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 31/92 (33%), Positives = 59/92 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D++ R+++++EFR +++++D ARG+DV + +V
Sbjct: 278 VDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLV 337
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 338 INYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
Score = 43 (20.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 189 LYDIYRYLPPGAQVVLLSATLPHE 212
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 175 (66.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 31/92 (33%), Positives = 59/92 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D++ R+++++EFR +++++D ARG+DV + +V
Sbjct: 278 VDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLV 337
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 338 INYDLPNNRELYIHRIGRSGRFGRKGVAINFV 369
Score = 43 (20.2 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 189 LYDIYRYLPPGAQVVLLSATLPHE 212
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 180 (68.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 33/96 (34%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D ++ K ++ ++ D+ +R+ I+ EFR +++ +D ARGIDV+ + +V
Sbjct: 287 VDYLSEKMRSHNFTVSSMHGDMPQKERDAIMNEFRSGDSRVLITTDVWARGIDVQQVSLV 346
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P+N + YIHRIGR+ R GR+G ++ V + +
Sbjct: 347 INYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDD 382
Score = 38 (18.4 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q L SATL H+
Sbjct: 198 IYDVYRYLPPDLQVCLVSATLPHE 221
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 197 (74.4 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 34/79 (43%), Positives = 58/79 (73%)
Query: 150 IAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIH 209
+ ++ D+K D+R+ I+ +FRR +++++D ARGIDV+ + +VINY+ P + + YIH
Sbjct: 292 VVAMHGDMKQDERDSIMNDFRRGNSRVLISTDVWARGIDVQQVSLVINYDLPTDKENYIH 351
Query: 210 RIGRTARGGRQGTSVTLVT 228
RIGR+ R GR+GT++ L+T
Sbjct: 352 RIGRSGRFGRKGTAINLIT 370
>ZFIN|ZDB-GENE-030131-3973 [details] [associations]
symbol:ddx31 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 31" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-3973 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
KO:K14806 HOGENOM:HOG000268799 GeneTree:ENSGT00550000075041
CTD:64794 HOVERGEN:HBG103793 OrthoDB:EOG42V8FK EMBL:BX276128
IPI:IPI00614096 RefSeq:XP_683832.1 UniGene:Dr.79241
Ensembl:ENSDART00000148314 GeneID:325248 KEGG:dre:325248
InParanoid:A2BFD2 NextBio:20809193 Uniprot:A2BFD2
Length = 739
Score = 202 (76.2 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 55/221 (24%), Positives = 106/221 (47%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P R Q +L SAT++ +L +S+ P SV G+ +T +A LS +
Sbjct: 338 PDR-QNVLLSATITEGLSRLASISMKDP---VSVHVSEGSEETVEACPQAAPQALSDSY- 392
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLI----RKHAMQGVLCFVNTAQGAHRLARLLHH 135
P L + + + L + L I + Q ++ F+++ + L L
Sbjct: 393 ---AVPERLQQHVVVVPSKLHLVCLAAFILAKCKFEQRQKLIIFISSCEAVEFLLNLFTA 449
Query: 136 I-----DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVE 190
+ N ++K +N ++ +++ ++R ++ QEF + K +++ +D ARG+D+
Sbjct: 450 VLCEIPSNTSSKSTSC-LNFYRLHGNMRQEERTEVFQEFSQCKTGILLCTDVAARGLDLP 508
Query: 191 NIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ ++ Y P + +Y+HR+GRTAR G QG+S+ +T E
Sbjct: 509 QVTWIVQYNPPVSAAEYVHRVGRTARIGAQGSSLLFLTPSE 549
>UNIPROTKB|Q9KV52 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 176 (67.0 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 42/142 (29%), Positives = 72/142 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + E+L S K +L LI + + F NT HR ++ H+
Sbjct: 227 TGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK---HRCEQIWAHL------- 276
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
A + + D+ +R +I+++F + +D++VA+D ARG+ + + V NY+ PD+
Sbjct: 277 AADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDD 336
Query: 204 IKKYIHRIGRTARGGRQGTSVT 225
+ Y+HRIGRT R G G S++
Sbjct: 337 CEDYVHRIGRTGRAGASGHSIS 358
Score = 43 (20.2 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 16 FLTYPSRPQRL--LFSATLSHDPEKLHQLSLFQPKLFTSVVEP 56
F P RL LFSATLS+ ++L + P+ VVEP
Sbjct: 183 FRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHV--VVEP 223
>TIGR_CMR|VC_0305 [details] [associations]
symbol:VC_0305 "ATP-dependent RNA helicase RhlB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] HAMAP:MF_00661
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR023554 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:EEEWPEK
KO:K03732 ProtClustDB:PRK04837 PIR:C82340 RefSeq:NP_229960.1
ProteinModelPortal:Q9KV52 DNASU:2614975 GeneID:2614975
KEGG:vch:VC0305 PATRIC:20079655 Uniprot:Q9KV52
Length = 438
Score = 176 (67.0 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 42/142 (29%), Positives = 72/142 (50%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + E+L S K +L LI + + F NT HR ++ H+
Sbjct: 227 TGHRIQEELFYPSNEHKMALLQTLIEEEWPDRAIIFANTK---HRCEQIWAHL------- 276
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
A + + D+ +R +I+++F + +D++VA+D ARG+ + + V NY+ PD+
Sbjct: 277 AADNHRVGLLTGDVPQKKRERILEQFTQGDVDILVATDVAARGLHIPQVTHVFNYDLPDD 336
Query: 204 IKKYIHRIGRTARGGRQGTSVT 225
+ Y+HRIGRT R G G S++
Sbjct: 337 CEDYVHRIGRTGRAGASGHSIS 358
Score = 43 (20.2 bits), Expect = 4.1e-15, Sum P(2) = 4.1e-15
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 16 FLTYPSRPQRL--LFSATLSHDPEKLHQLSLFQPKLFTSVVEP 56
F P RL LFSATLS+ ++L + P+ VVEP
Sbjct: 183 FRRMPEPKDRLNMLFSATLSYRVQELAFEHMNNPEHV--VVEP 223
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 200 (75.5 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 51/151 (33%), Positives = 82/151 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHIDNVA 140
TT + +++ + N K +L LI A + VL F T GA+RLA L H + VA
Sbjct: 219 TTVERIEQRVFRLAANHKRSLLAHLITVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVA 278
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G N ++ + R K + +F+ + ++VA+D ARG+D++ + V+N+E
Sbjct: 279 IHG-----NKSQ-------NARTKALADFKAGDVRIMVATDIAARGLDIDQLPHVVNFEL 326
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R GR G +++LV E
Sbjct: 327 PNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 174 (66.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 43/150 (28%), Positives = 82/150 (54%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ + TT + + + + K +L +L+ ++ + VL F +T + A L + L +D
Sbjct: 207 VAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELT-LDG 265
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
++ AG + D RN+++ +F+ K+ ++VA+D ARG+D++ + +VIN
Sbjct: 266 IS---AGV------FHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINL 316
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
E P + Y+HRIGRT R G G +++ V+
Sbjct: 317 ELPFLAEDYVHRIGRTGRAGLSGRAISFVS 346
Score = 45 (20.9 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE 55
Q +LFSAT S ++L L QP+ + +V E
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQ-WVNVAE 209
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 174 (66.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 43/150 (28%), Positives = 82/150 (54%)
Query: 79 IGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
+ + TT + + + + K +L +L+ ++ + VL F +T + A L + L +D
Sbjct: 207 VAENTTASTVEQLVYRVDKRRKAELLSELVGRNNWRQVLVFASTKECAEHLLQELT-LDG 265
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
++ AG + D RN+++ +F+ K+ ++VA+D ARG+D++ + +VIN
Sbjct: 266 IS---AGV------FHGDKTQGARNRVLDDFKAGKLRVLVATDVAARGLDIQALPLVINL 316
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
E P + Y+HRIGRT R G G +++ V+
Sbjct: 317 ELPFLAEDYVHRIGRTGRAGLSGRAISFVS 346
Score = 45 (20.9 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 24 QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVE 55
Q +LFSAT S ++L L QP+ + +V E
Sbjct: 179 QTMLFSATYSDAVKQLSHKMLNQPQ-WVNVAE 209
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 183 (69.5 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 33/95 (34%), Positives = 61/95 (64%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
+ +AT ++ ++ D+ +RNK+I +F+++ + ++VA+D ARG+D+ +I V+
Sbjct: 516 EELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVV 575
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
NY+ +I + HRIGRT R G +G + TL+TT +
Sbjct: 576 NYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKD 610
Score = 45 (20.9 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 14/28 (50%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LLFSAT EKL + L P
Sbjct: 434 PDR-QTLLFSATFRKKIEKLARDILVDP 460
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 199 (75.1 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 36/76 (47%), Positives = 55/76 (72%)
Query: 153 VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIG 212
++ D + ++R+ ++ EFR+ K ++VA+D ARGIDV+ I VINY+ P NI+ Y+HRIG
Sbjct: 404 IHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPGNIEDYVHRIG 463
Query: 213 RTARGGRQGTSVTLVT 228
RT RGG GT+++ T
Sbjct: 464 RTGRGGASGTAISFFT 479
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 170 (64.9 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 33/93 (35%), Positives = 56/93 (60%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 528 DFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVI 587
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
N++ P I +Y+HRIGRT R G G +++ T
Sbjct: 588 NFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 620
Score = 54 (24.1 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR LLFSAT + ++L L LF +V + G D Q + + G
Sbjct: 444 PSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVG 497
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 172 (65.6 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 286 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 345
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 346 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 377
Score = 44 (20.5 bits), Expect = 6.1e-15, Sum P(2) = 6.1e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 197 IYDVYRYLPPATQVVLISATLPHE 220
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 199 (75.1 bits), Expect = 6.4e-15, P = 6.4e-15
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLL--HHIDNVA 140
TT + +++ + K +L LI A + VL F T GA+RLA L H + VA
Sbjct: 219 TTVERIEQRVFRLPASHKRALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVA 278
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
G N ++ + R K + +F+ ++ ++VA+D ARG+D++ + V+N+E
Sbjct: 279 IHG-----NKSQ-------NARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFEL 326
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P+ + Y+HRIGRT R GR G +++LV E
Sbjct: 327 PNVDEDYVHRIGRTGRAGRSGEAISLVAPDE 357
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 179 (68.1 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 39/125 (31%), Positives = 68/125 (54%)
Query: 103 VLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161
++ L+++H G + F T + A RLA G ++ D+ Q
Sbjct: 350 IIGPLVKEHGKGGKCIVFTQTKRDADRLAF-----------GLAKSYKCEALHGDISQAQ 398
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
R + + FR ++VA+D ARG+DV N+D+VI+YE P+N + ++HR GRT R G++G
Sbjct: 399 RERTLAGFRDGNFSILVATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKG 458
Query: 222 TSVTL 226
+++ +
Sbjct: 459 SAILI 463
Score = 43 (20.2 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 58 GTGDTQPTSSEAGADNLSSGFIG 80
G GD++ S G D L+ +G
Sbjct: 100 GIGDSESVGSSGGGDGLAIADLG 122
Score = 37 (18.1 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 20 PSRPQRLLFSATL 32
P++ Q ++FSAT+
Sbjct: 291 PAKRQSMMFSATM 303
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 172 (65.6 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 290 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 349
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 350 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 381
Score = 44 (20.5 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 201 IYDVYRYLPPATQVVLISATLPHE 224
>UNIPROTKB|F1RFL5 [details] [associations]
symbol:DDX55 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
CTD:57696 KO:K14809 GeneTree:ENSGT00550000074969 OMA:CACVEYW
EMBL:CU468658 RefSeq:XP_001927747.2 UniGene:Ssc.4554
UniGene:Ssc.95961 Ensembl:ENSSSCT00000010713 GeneID:100157342
KEGG:ssc:100157342 Uniprot:F1RFL5
Length = 600
Score = 170 (64.9 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 41/148 (27%), Positives = 72/148 (48%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R H + L F +T + L +
Sbjct: 238 TPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACVEYYGKALEALVR----- 292
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
+ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P +
Sbjct: 293 ---SVKIMCIHGKMKY-KRNKIFMEFRQLQSGILVCTDVMARGIDIPEVNWVLQYDPPSS 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 52 (23.4 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + + A TQ T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGAAASSTQKTPS 240
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 172 (65.6 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 291 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 350
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 351 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 382
Score = 44 (20.5 bits), Expect = 6.8e-15, Sum P(2) = 6.8e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 202 IYDVYRYLPPATQVVLISATLPHE 225
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 172 (65.6 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 293 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLI 352
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 353 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 384
Score = 44 (20.5 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q +L SATL H+
Sbjct: 204 IYDVYRYLPPATQVVLISATLPHE 227
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 176 (67.0 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 38/112 (33%), Positives = 63/112 (56%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
++ FVN + +A+ L+ I A G+K +QR + I++ R + D
Sbjct: 519 IIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQ----------EQRERAIEQLRNKTAD 568
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
++VA+D RGID+ N+ +V+NY +I+ Y HRIGRT R G+ GT++T +
Sbjct: 569 ILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFL 620
Score = 47 (21.6 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 21 SRPQRLLFSATLSHDPEKLHQLSLFQPKLFT 51
SR Q ++FSATL L + L +P + T
Sbjct: 448 SRRQTIMFSATLPPRVANLAKSYLIEPVMLT 478
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 172 (65.6 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 34/102 (33%), Positives = 61/102 (59%)
Query: 131 RLLHHIDNVATKGAGTKMNIAE-VYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
R +D +A + + AE ++ DL +R ++++F+ I+++VA+D ARG+D+
Sbjct: 248 RTKRRVDELA-EALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDI 306
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ V N++ P + + Y+HRIGRT R G+ G ++T VT E
Sbjct: 307 SGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPRE 348
Score = 46 (21.3 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
P+ Q LLFSAT+ ++ + + +P+L
Sbjct: 173 PAERQTLLFSATMPDPIRRIAERFMNEPEL 202
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 170 (64.9 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 31/96 (32%), Positives = 59/96 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ + D+ + R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 293 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 352
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IN++ P + Y+HRIGR+ R GR+G ++ +T+ +
Sbjct: 353 INFDLPTQPENYLHRIGRSGRFGRKGVAINFMTSED 388
Score = 46 (21.3 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
++D F PS+ Q +FSAT+ PE L F K
Sbjct: 204 IYDIFQLLPSKVQVGVFSATMP--PEALEITRKFMNK 238
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 198 (74.8 bits), Expect = 7.7e-15, P = 7.7e-15
Identities = 51/201 (25%), Positives = 103/201 (51%)
Query: 37 EKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG-----KFTTPAELSEK 91
E++HQ+ PK +++ A ++ +N S ++G + +T L +
Sbjct: 285 EEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNN-SPVYVGVDDEREISTVEGLEQG 343
Query: 92 LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIA 151
C + + L+LY ++K+ + ++ F+++ A LL++ID + +
Sbjct: 344 YVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYID----------IPVL 393
Query: 152 EVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRI 211
E++ K +R EF + +++ +D ARG+D+ ++D +I Y+ PD+ K+YIHR+
Sbjct: 394 ELHGRQKQQKRTNTFYEFVNAEKGILICTDVAARGLDIPSVDWIIQYDPPDDPKEYIHRV 453
Query: 212 GRTARG-GRQGTSVTLVTTHE 231
GRTARG G++G ++ + E
Sbjct: 454 GRTARGVGKKGRALLFLLPKE 474
>TAIR|locus:2086775 [details] [associations]
symbol:AT3G16840 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AB028608 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14805 HOGENOM:HOG000290702 EMBL:AK318706
EMBL:AY045669 EMBL:AY054475 EMBL:AJ010465 IPI:IPI00535611
IPI:IPI01019866 PIR:T51744 RefSeq:NP_188307.3 UniGene:At.5723
ProteinModelPortal:Q93Y39 SMR:Q93Y39 PaxDb:Q93Y39 PRIDE:Q93Y39
GeneID:820937 KEGG:ath:AT3G16840 GeneFarm:929 TAIR:At3g16840
InParanoid:Q93Y39 OMA:DAYLYYI Genevestigator:Q93Y39
GermOnline:AT3G16840 Uniprot:Q93Y39
Length = 826
Score = 200 (75.5 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 62/223 (27%), Positives = 103/223 (46%)
Query: 14 DTFLTYPSRP-QRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGA- 71
DT L P + Q +FSAT++ + +L K S + S AG
Sbjct: 402 DTVLNVPKKKRQTFVFSATIALSSDFRKKLKRGSSKSKQS--SSGEVNSIEVLSERAGMR 459
Query: 72 DNLSSGFIGKFTTPA---ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHR 128
DN++ I TT ++ E C K LY ++ H + F +
Sbjct: 460 DNVA--IIDLTTTSILAPKIEESFIKCEEKEKDAYLYYILSVHGQGRTIVFCTSVTD--- 514
Query: 129 LARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGID 188
L HI + K G +++ ++S++K R K I FR + +++A+D +ARGID
Sbjct: 515 ----LRHISGLL-KILG--LDVCTLFSEMKQRARLKSIDRFRASENGILIATDLVARGID 567
Query: 189 VENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++N+ +I+Y+ P + + Y+HR GRTAR G S+ L+ +E
Sbjct: 568 IKNVRTIIHYKLPHSAEVYVHRCGRTARAFADGCSIALIEPNE 610
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 173 (66.0 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 31/92 (33%), Positives = 57/92 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R I++EFR +++++D ARG+DV + ++
Sbjct: 285 VDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVSQVSLI 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
INY+ P+N + YIHRIGR+ R GR+G ++ V
Sbjct: 345 INYDLPNNRELYIHRIGRSGRYGRKGVAINFV 376
Score = 42 (19.8 bits), Expect = 8.0e-15, Sum P(2) = 8.0e-15
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHD 35
++D + P Q L SATL H+
Sbjct: 196 IYDVYRYLPPATQVCLISATLPHE 219
>MGI|MGI:1915098 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915098 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
GeneTree:ENSGT00550000074969 OMA:CACVEYW EMBL:AK129402
EMBL:AK033741 EMBL:AK154422 EMBL:BC117786 EMBL:BC117787
IPI:IPI00453808 RefSeq:NP_080685.2 UniGene:Mm.281601
ProteinModelPortal:Q6ZPL9 SMR:Q6ZPL9 IntAct:Q6ZPL9 STRING:Q6ZPL9
PRIDE:Q6ZPL9 Ensembl:ENSMUST00000071057 GeneID:67848 KEGG:mmu:67848
UCSC:uc008zqc.2 InParanoid:Q6ZPL9 NextBio:325707 Bgee:Q6ZPL9
CleanEx:MM_DDX55 Genevestigator:Q6ZPL9
GermOnline:ENSMUSG00000029389 Uniprot:Q6ZPL9
Length = 600
Score = 173 (66.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 43/148 (29%), Positives = 73/148 (49%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R + L F +T + L + K
Sbjct: 238 TPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEAL----LK- 292
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
K+ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P N
Sbjct: 293 ---KVKILCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 48 (22.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + + TQ T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS 240
>UNIPROTKB|Q8EJQ5 [details] [associations]
symbol:rhlB "ATP-dependent RNA helicase RhlB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 172 (65.6 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 42/142 (29%), Positives = 76/142 (53%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + E++ S K +L LI + + + F NT L L +G
Sbjct: 227 TSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL--------EG 278
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G ++ + + D+ +R +I+++F + ++D++VA+D ARG+ + ++ V NY+ PD+
Sbjct: 279 DGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDD 336
Query: 204 IKKYIHRIGRTARGGRQGTSVT 225
+ Y+HRIGRT R G +G SV+
Sbjct: 337 CEDYVHRIGRTGRAGNKGVSVS 358
Score = 44 (20.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 16 FLTYPSRPQRL--LFSATLSHDPEKL 39
F P+ QRL LFSATLS ++L
Sbjct: 183 FRRMPNADQRLNMLFSATLSMKVQEL 208
>TIGR_CMR|SO_0407 [details] [associations]
symbol:SO_0407 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] HAMAP:MF_00661 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR023554
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732 ProtClustDB:PRK04837
RefSeq:NP_716045.1 ProteinModelPortal:Q8EJQ5 GeneID:1168284
KEGG:son:SO_0407 PATRIC:23520517 OMA:PANAERQ Uniprot:Q8EJQ5
Length = 439
Score = 172 (65.6 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 42/142 (29%), Positives = 76/142 (53%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
T + E++ S K +L LI + + + F NT L L +G
Sbjct: 227 TSKNIKEEIFYPSQEDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWL--------EG 278
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
G ++ + + D+ +R +I+++F + ++D++VA+D ARG+ + ++ V NY+ PD+
Sbjct: 279 DGHRVGL--LTGDVPQKKRIRILEQFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDD 336
Query: 204 IKKYIHRIGRTARGGRQGTSVT 225
+ Y+HRIGRT R G +G SV+
Sbjct: 337 CEDYVHRIGRTGRAGNKGVSVS 358
Score = 44 (20.5 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 16 FLTYPSRPQRL--LFSATLSHDPEKL 39
F P+ QRL LFSATLS ++L
Sbjct: 183 FRRMPNADQRLNMLFSATLSMKVQEL 208
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 179 (68.1 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 48/162 (29%), Positives = 80/162 (49%)
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRL 129
DN+S F +F + A TT +T L+ ++IR H + L +
Sbjct: 406 DNISQSF--EFLSSA------TTEATKFNKLI--KIIRSHWRVTENPLIII--------F 447
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
A H D+++ + + +N ++ D R + I FR + ++++A+D ARGID+
Sbjct: 448 ANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDI 507
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ +VINY+ +YIHRIGRT R G G S T ++ +
Sbjct: 508 PNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQD 549
Score = 41 (19.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 26 LLFSATLSHDPEKLHQLSLFQP 47
++F+AT+S EKL + L P
Sbjct: 372 MMFTATISPTVEKLTKKYLIDP 393
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 179 (68.1 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 48/162 (29%), Positives = 80/162 (49%)
Query: 72 DNLSSGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKH--AMQGVLCFVNTAQGAHRL 129
DN+S F +F + A TT +T L+ ++IR H + L +
Sbjct: 406 DNISQSF--EFLSSA------TTEATKFNKLI--KIIRSHWRVTENPLIII--------F 447
Query: 130 ARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDV 189
A H D+++ + + +N ++ D R + I FR + ++++A+D ARGID+
Sbjct: 448 ANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFRNHESEVLIATDVAARGIDI 507
Query: 190 ENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
N+ +VINY+ +YIHRIGRT R G G S T ++ +
Sbjct: 508 PNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQD 549
Score = 41 (19.5 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 26 LLFSATLSHDPEKLHQLSLFQP 47
++F+AT+S EKL + L P
Sbjct: 372 MMFTATISPTVEKLTKKYLIDP 393
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 193 (73.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 35/96 (36%), Positives = 62/96 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K + ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 281 VDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLV 340
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR+ R GR+G ++ VT ++
Sbjct: 341 INYDLPSNRENYIHRIGRSGRFGRKGVAINFVTEND 376
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 40/114 (35%), Positives = 71/114 (62%)
Query: 117 LCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDL 176
L F T +GA L H+I + G + I ++ D+ ++R +I+Q+F+ +++D+
Sbjct: 392 LIFTMTKKGADTLK---HYIQS-----NGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDI 443
Query: 177 VVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230
VVA+D +RG+D++ I VIN+ P + + Y+HRIGRT R G GTS ++++ +
Sbjct: 444 VVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHSILSNN 497
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 177 (67.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 32/93 (34%), Positives = 58/93 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + + + ++ ++ D++ R I+++FR +++ +D LARGIDV+ + +V
Sbjct: 282 VDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGIDVQQVSLV 341
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY+ P N + YIHRIGR R GR+G ++ +T
Sbjct: 342 INYDLPSNRENYIHRIGRGGRFGRKGVAINFIT 374
Score = 36 (17.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 14 DTFLTYPSRPQRLLFSATLSHD 35
D F P Q +L SAT+ D
Sbjct: 195 DVFKMLPPDVQVILLSATMPPD 216
>UNIPROTKB|F1S0U0 [details] [associations]
symbol:DDX31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000075041 OMA:ARIGCHG EMBL:CU326339
Ensembl:ENSSSCT00000006300 Uniprot:F1S0U0
Length = 784
Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 65/227 (28%), Positives = 112/227 (49%)
Query: 22 RPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEA--GADN-LSS 76
RP+R +L SATL+ +L +SL +P + SV+E G+ D S A GA +S
Sbjct: 370 RPERQNVLLSATLTEGVTRLADISLHEP-VRISVLE--GSQDQMHPKSRAILGASPPAAS 426
Query: 77 GFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAM----QGVLCFVNTAQGA--HR-- 128
+ F P L + + + L+ + L I + Q ++ F ++ + H
Sbjct: 427 SELDGFAIPVGLEQHVALVPSKLRLVSLAAFILQKCKFEPDQKMIVFFSSCELVEFHHSL 486
Query: 129 -LARLLHHIDNVAT---KGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLA 184
L LL +A A + ++ D++ ++R + QEF R K +++ +D A
Sbjct: 487 FLQTLLGGSGALAPGRLPSASPPLTFLRLHGDMEQEERTAVFQEFSRSKAGVLLCTDVAA 546
Query: 185 RGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
RG+D+ + ++ Y AP + +Y+HRIGRTAR G QG+S+ ++ E
Sbjct: 547 RGLDLPQVTWIVQYTAPSSPAEYVHRIGRTARIGFQGSSLLILAPSE 593
>DICTYBASE|DDB_G0280407 [details] [associations]
symbol:ddx56 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS]
[GO:0000027 "ribosomal large subunit assembly" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0280407 GO:GO:0005524 GO:GO:0005730
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000036
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0000027 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HSSP:P10081 RefSeq:XP_641158.1
STRING:Q54VF1 EnsemblProtists:DDB0234216 GeneID:8622538
KEGG:ddi:DDB_G0280407 OMA:CARETEM ProtClustDB:CLSZ2730700
Uniprot:Q54VF1
Length = 685
Score = 154 (59.3 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 27/48 (56%), Positives = 37/48 (77%)
Query: 183 LARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTH 230
+ARGID N+D+V+N++ P IK YIHRIGRTARG +G +++ VT H
Sbjct: 427 VARGIDFRNVDIVVNFDFPRTIKNYIHRIGRTARGTNKGIALSFVTYH 474
Score = 79 (32.9 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATKGAGT 146
LSE C+ K L+++ L+R MQG +L FVN ++L
Sbjct: 244 LSEYSIKCAEVDKFLLVFSLLRLRLMQGKILFFVNDTNNCYKLKLFFERFH--------- 294
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASD 181
+ A + S+L + R+ II +F + D ++A+D
Sbjct: 295 -IKCAVLNSELPINSRHDIILQFNKGLFDYLIATD 328
Score = 45 (20.9 bits), Expect = 1.2e-14, Sum P(3) = 1.2e-14
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q L SATL+ + E+L +L L P
Sbjct: 202 PKVCQCFLMSATLTKEVEELKKLVLHTP 229
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 180 (68.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 30/84 (35%), Positives = 57/84 (67%)
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
+++ ++ D + R K ++ F+ K+ +++A+D +RG+DV ++ V N++ P NI++Y
Sbjct: 512 ISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEY 571
Query: 208 IHRIGRTARGGRQGTSVTLVTTHE 231
+HRIGRT R GR G S+T +T ++
Sbjct: 572 VHRIGRTGRAGRTGVSITTLTRND 595
Score = 40 (19.1 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKL 49
P R Q ++ SAT H +L Q L +P +
Sbjct: 419 PDR-QTVMTSATWPHSVHRLAQSYLKEPMI 447
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 184 (69.8 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 34/80 (42%), Positives = 55/80 (68%)
Query: 149 NIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYI 208
N ++ D+ RNK+I +F+R++ D++VA+D ARG+D+ +I V+NY+ +I+ +
Sbjct: 540 NCLLLHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHT 599
Query: 209 HRIGRTARGGRQGTSVTLVT 228
HRIGRT R G +G + TLVT
Sbjct: 600 HRIGRTGRAGEKGNAYTLVT 619
Score = 38 (18.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 22 RPQR--LLFSATLSHDPEKLHQLSLFQP 47
RP R L+FSAT E+L + L P
Sbjct: 445 RPDRQCLMFSATFKKRIERLARDVLSDP 472
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 191 (72.3 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 37/96 (38%), Positives = 62/96 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K KM A ++++ +R ++ FR K+++++A+D ARGID++++ V
Sbjct: 247 LDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLTHV 306
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
I+ E PD + +YIHR GRT R G++GT V+LVT E
Sbjct: 307 IHLELPDTVDQYIHRSGRTGRMGKEGTVVSLVTPQE 342
>RGD|2324094 [details] [associations]
symbol:Ddx55 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 55"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:2324094
GO:GO:0005524 GO:GO:0003723 EMBL:CH473973 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959 CTD:57696 KO:K14809
OrthoDB:EOG4WH8KN GeneTree:ENSGT00550000074969 IPI:IPI00370890
RefSeq:NP_001258255.1 UniGene:Rn.209289 Ensembl:ENSRNOT00000001387
GeneID:100362764 KEGG:rno:100362764 UCSC:RGD:2324094 Uniprot:D3ZX56
Length = 600
Score = 170 (64.9 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 41/148 (27%), Positives = 72/148 (48%)
Query: 84 TPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKG 143
TP+ L C + K L +R + L F +T + L +
Sbjct: 238 TPSRLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALVQ----- 292
Query: 144 AGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
++ I ++ +K+ +RNKI EFR+ + ++V +D +ARGID+ ++ V+ Y+ P N
Sbjct: 293 ---RVKILCIHGKMKY-KRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSN 348
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
++HR GRTAR G G+++ + E
Sbjct: 349 ASAFVHRCGRTARIGHGGSALVFLLPME 376
Score = 48 (22.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 14 DTFLTYPSRPQRL-LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSS 67
+T L + + +R LFSAT + + E L + L P + + TQ T S
Sbjct: 186 NTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRISVKEKGVAASSTQKTPS 240
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 175 (66.7 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 38/113 (33%), Positives = 65/113 (57%)
Query: 116 VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKID 175
+L F++T +G ++ R L +D ++ D +R+ ++ EFR K
Sbjct: 347 ILVFLDTKKGCDQITRQLR-MDGWPA---------LSIHGDKSQAERDWVLSEFRSGKSP 396
Query: 176 LVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
++ A+D ARG+DV+++ VINY+ P +++ Y+HRIGRT R G +GT+ T T
Sbjct: 397 IMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFT 449
Score = 40 (19.1 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q L +SAT + E+L + L+ P
Sbjct: 276 PDR-QTLYWSATWPKEVEQLSKKFLYNP 302
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 175 (66.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 45/147 (30%), Positives = 78/147 (53%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID--NVATKGA 144
E+S K +T ST ++ + L K+ LCF + N +
Sbjct: 359 EVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNL 418
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
G K +I ++ L +QR + F+ K ++++++ ARG+D+++I +VIN++ +
Sbjct: 419 GLK-SIC-LHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDIC-SC 475
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K+YIHR+GRTAR GR G S+T VT ++
Sbjct: 476 KEYIHRVGRTARAGRSGKSITFVTQYD 502
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 23 PQRL--LFSATLSHDPEKLHQLSLFQP 47
P R+ LFSAT++ + KL + L P
Sbjct: 329 PNRITFLFSATMTKNVAKLKKACLKNP 355
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 175 (66.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 45/147 (30%), Positives = 78/147 (53%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID--NVATKGA 144
E+S K +T ST ++ + L K+ LCF + N +
Sbjct: 359 EVSNKYSTVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNL 418
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
G K +I ++ L +QR + F+ K ++++++ ARG+D+++I +VIN++ +
Sbjct: 419 GLK-SIC-LHGKLTQNQRLSSLNSFKVNKYNILISTQVGARGLDLQDIKIVINFDIC-SC 475
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K+YIHR+GRTAR GR G S+T VT ++
Sbjct: 476 KEYIHRVGRTARAGRSGKSITFVTQYD 502
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 23 PQRL--LFSATLSHDPEKLHQLSLFQP 47
P R+ LFSAT++ + KL + L P
Sbjct: 329 PNRITFLFSATMTKNVAKLKKACLKNP 355
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 172 (65.6 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 38/128 (29%), Positives = 71/128 (55%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L L+ H + F NT + +A LH +G ++ E++ D++ +R+
Sbjct: 234 LETLLLHHQPTSSVVFCNTKREVQNVADALHQ--------SG--FSVIELHGDMEQRERD 283
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
+ + +F + I ++VA+D ARG+DV+N+D V NY+ + + ++HRIGRT R G +G +
Sbjct: 284 QALVQFANKSISILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLA 343
Query: 224 VTLVTTHE 231
+ + +E
Sbjct: 344 FSFFSDNE 351
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQ 41
P+ Q LLFSAT E++ Q
Sbjct: 176 PAERQTLLFSATYPASIEQIAQ 197
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 190 (71.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 37/96 (38%), Positives = 60/96 (62%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + +K K ++ + D K R+ I+Q FR +++ +D LARGIDV+ + +V
Sbjct: 276 VDWLTSKMTEQKFTVSSTHGDQK--DRDGILQAFRSGATRVLITTDLLARGIDVQQVSLV 333
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
IN++ P NI+ YIHRIGR+ R GR+G ++ +T E
Sbjct: 334 INFDLPTNIENYIHRIGRSGRFGRKGVAINFITDAE 369
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 170 (64.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 32/93 (34%), Positives = 57/93 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ + D+ + R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 291 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 350
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
IN++ P + Y+HRIGR+ R GR+G ++ VT
Sbjct: 351 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
Score = 41 (19.5 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
++D F P + Q +FSAT+ PE L F K
Sbjct: 202 IYDIFQLLPPKIQVGVFSATMP--PEALEITRKFMSK 236
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 170 (64.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 32/93 (34%), Positives = 57/93 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ + D+ + R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 291 VDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLV 350
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
IN++ P + Y+HRIGR+ R GR+G ++ VT
Sbjct: 351 INFDLPTQPENYLHRIGRSGRFGRKGVAINFVT 383
Score = 41 (19.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
++D F P + Q +FSAT+ PE L F K
Sbjct: 202 IYDIFQLLPPKIQVGVFSATMP--PEALEITRKFMSK 236
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 177 (67.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 146 TKMNIAEVYSDLKFDQ--RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
T++ + YS K Q RNK+ EFR+ K+ +V SD L RGID++ ++VVIN++ P
Sbjct: 288 TELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKT 347
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGR+ R G G ++ L++ ++
Sbjct: 348 AETYLHRIGRSGRFGHLGLAINLMSWND 375
Score = 38 (18.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 19 YPSRPQRLLFSAT 31
+P Q LLFSAT
Sbjct: 200 FPPNRQALLFSAT 212
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 177 (67.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 146 TKMNIAEVYSDLKFDQ--RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDN 203
T++ + YS K Q RNK+ EFR+ K+ +V SD L RGID++ ++VVIN++ P
Sbjct: 288 TELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGIDIQAVNVVINFDFPKT 347
Query: 204 IKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ Y+HRIGR+ R G G ++ L++ ++
Sbjct: 348 AETYLHRIGRSGRFGHLGLAINLMSWND 375
Score = 38 (18.4 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 19 YPSRPQRLLFSAT 31
+P Q LLFSAT
Sbjct: 200 FPPNRQALLFSAT 212
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 192 (72.6 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 36/83 (43%), Positives = 54/83 (65%)
Query: 149 NIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYI 208
N+A ++ DL QR + + EF+ K +L++A+D ARG+D+ N+ VIN P ++ Y+
Sbjct: 385 NVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYV 444
Query: 209 HRIGRTARGGRQGTSVTLVTTHE 231
HRIGRT R G+ GT+ TL T E
Sbjct: 445 HRIGRTGRAGQTGTAHTLFTEQE 467
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 176 (67.0 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 33/76 (43%), Positives = 49/76 (64%)
Query: 156 DLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTA 215
DL QR + I + + K ++VA+D +ARG+D+ I +VINY+ P + + Y+HRIGRT
Sbjct: 287 DLNQAQRERCIDQMKSGKSSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTG 346
Query: 216 RGGRQGTSVTLVTTHE 231
R GR+G S+ V E
Sbjct: 347 RAGREGMSIAFVRPRE 362
Score = 40 (19.1 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
Identities = 15/58 (25%), Positives = 25/58 (43%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPK-LFTSVVEPAGTGDTQPTSSEAGADNLSS 76
P Q LFSAT+ K+ L P+ + + V+ A TQ +G +++
Sbjct: 187 PKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAWKVSGITKMTA 244
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 177 (67.4 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGR 213
++ +K +RNK+ EFR+ K+ +V SD L RGID++ ++VVIN++ P + Y+HRIGR
Sbjct: 314 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGR 373
Query: 214 TARGGRQGTSVTLVTTHE 231
+ R G G ++ L+ ++
Sbjct: 374 SGRFGHLGLAINLINWND 391
Score = 36 (17.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 25/106 (23%), Positives = 41/106 (38%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFI 79
P Q LLFSAT ++ L +P + E G TQ + L +
Sbjct: 217 PPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHC--L 274
Query: 80 GKFTTPAELSEKLTTC-STNLKPLVLYQLIRKHAMQGVLCFVNTAQ 124
+ ++++ + C STN L L +K G C+ + A+
Sbjct: 275 NTLFSKLQINQAIIFCNSTNRVEL----LAKKITDLGYSCYYSHAR 316
>CGD|CAL0005900 [details] [associations]
symbol:MAK5 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0005900 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 EMBL:AACQ01000094 EMBL:AACQ01000093 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14805
RefSeq:XP_714899.1 RefSeq:XP_714962.1 ProteinModelPortal:Q59ZH9
STRING:Q59ZH9 GeneID:3643358 GeneID:3643454 KEGG:cal:CaO19.11024
KEGG:cal:CaO19.3540 Uniprot:Q59ZH9
Length = 782
Score = 194 (73.4 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 66/220 (30%), Positives = 105/220 (47%)
Query: 24 QRLLFSATLSHDP-EKL--HQL----SLF-QPKLFTSVVEPAGTGDTQPTSSEAGADNLS 75
Q L+FSAT S D KL HQ SL ++ + E D +PT +A +
Sbjct: 400 QTLVFSATFSRDLFRKLDRHQKGKSSSLMGNDEIVQLLNEKLKFKDKKPTLVDANPKEIV 459
Query: 76 SGFIGKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
SG +++E L C + L LY + + L F N+ RL LL++
Sbjct: 460 SG---------QITEALVECGPTERDLYLYYFLLMYK-GSTLVFANSIDSVKRLVPLLNN 509
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFR----RRKIDLVVASDNLARGIDVEN 191
+ N+ ++S + QR + +++F+ + ++ ++VASD ARG+D+ N
Sbjct: 510 L-NIPA---------FSIHSSMIQKQRLRALEKFKEASQKNEVAVLVASDVAARGLDIPN 559
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
ID V++Y P + YIHR GRTAR G++G S + E
Sbjct: 560 IDHVVHYHLPRSADVYIHRSGRTARAGKEGVSAMFCSPQE 599
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 177 (67.4 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 47/151 (31%), Positives = 78/151 (51%)
Query: 79 IGKFTTPAELSEKLT-TCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID 137
IG P E E++ + K L +++ ++ FVN +GA L++ L
Sbjct: 538 IGSAGKPTERVEQVVYMVPEDRKRKKLVEVLESQFQPPIIIFVNQKKGADMLSKGL---- 593
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVIN 197
TK G K + ++ DQR +Q + D++VA+D RGIDV+++ +V+N
Sbjct: 594 ---TK-LGFKPTV--LHGGKGQDQREYALQALKEGTSDILVATDVAGRGIDVKDVSLVLN 647
Query: 198 YEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
Y+ +I+ Y HRIGRT R G+ G ++T +T
Sbjct: 648 YDMAKSIEDYTHRIGRTGRAGKHGKAITFLT 678
Score = 40 (19.1 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
F T Q ++F+AT+S E+L + L +P
Sbjct: 502 FSTREKYRQTVMFTATMSSAIERLARQYLRRP 533
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 170 (64.9 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 47/153 (30%), Positives = 78/153 (50%)
Query: 80 GKFTTPAELSEKLTTCST-NLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
G TT + ++L + K +L LI +++ + F T + A LA L
Sbjct: 210 GTKTTHEHIEQRLHVADDLHHKNRLLRHLITDESLRRAIIFSATKRDAENLALEL----- 264
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
K G + A ++ D+ + RN+ I ++ +I L+VA+D ARG+DV I VIN+
Sbjct: 265 ---KAQGH--SAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARGLDVTGISHVINF 319
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + Y+HRIGRT R G G +++ + +E
Sbjct: 320 DLPKFAEDYVHRIGRTGRAGASGIAISFASLNE 352
Score = 40 (19.1 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDT 62
P+ Q LLF+AT+ +L L +P+ ++ AGT T
Sbjct: 176 PATRQTLLFTATMDSAMARLAGRLLREPER----IDIAGTKTT 214
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 184 (69.8 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 191 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 250
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 251 INYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 286
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 184 (69.8 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 191 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 250
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 251 INYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 286
>UNIPROTKB|Q9KKW0 [details] [associations]
symbol:VCA0990 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 188 (71.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
+ E L + K L L+++H VL F+ + A L + L+ VAT
Sbjct: 233 VQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATV----- 287
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
++ D +R + EF+ +++A+D LARGI +E + VVIN+E P + + Y
Sbjct: 288 -----LHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETY 342
Query: 208 IHRIGRTARGGRQGTSVTLV 227
+HR+GRTAR G+ G +++LV
Sbjct: 343 VHRVGRTARAGQHGIALSLV 362
>TIGR_CMR|VC_A0990 [details] [associations]
symbol:VC_A0990 "ATP-dependent RNA helicase, DEAD box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GenomeReviews:AE003853_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 OMA:IGAKENA ProtClustDB:CLSK869861
EMBL:AE004426 PIR:H82390 RefSeq:NP_233374.1
ProteinModelPortal:Q9KKW0 DNASU:2612329 GeneID:2612329
KEGG:vch:VCA0990 PATRIC:20086502 Uniprot:Q9KKW0
Length = 428
Score = 188 (71.2 bits), Expect = 4.6e-14, P = 4.6e-14
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 88 LSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTK 147
+ E L + K L L+++H VL F+ + A L + L+ VAT
Sbjct: 233 VQETLYLVNKGSKTQALVALLKQHQWPQVLVFIGAKENADSLTKKLNKAGIVATV----- 287
Query: 148 MNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY 207
++ D +R + EF+ +++A+D LARGI +E + VVIN+E P + + Y
Sbjct: 288 -----LHGDKSQSEREAALAEFKNGTTQVLIATDLLARGIHIELLPVVINFELPMHAETY 342
Query: 208 IHRIGRTARGGRQGTSVTLV 227
+HR+GRTAR G+ G +++LV
Sbjct: 343 VHRVGRTARAGQHGIALSLV 362
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 178 (67.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 38/125 (30%), Positives = 69/125 (55%)
Query: 103 VLYQLIRKHAMQG-VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161
++ L+ +HA G + F T + A RL+ L ++ D+ Q
Sbjct: 338 IIGPLVTEHAKGGKCIVFTQTKRDADRLSYAL-----------ARSFKCEALHGDISQSQ 386
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
R + + FR +++VA+D ARG+DV N+D++I+YE P+N + ++HR GRT R G++G
Sbjct: 387 RERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKG 446
Query: 222 TSVTL 226
+++ +
Sbjct: 447 SAILI 451
Score = 36 (17.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 20 PSRPQRLLFSATL 32
P + Q ++FSAT+
Sbjct: 279 PEKRQSMMFSATM 291
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 182 (69.1 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 42/149 (28%), Positives = 83/149 (55%)
Query: 80 GKFTTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGV-LCFVNTAQGAHRLARLLHHIDN 138
GK +++++ C+ + K L L +L+ + +G + FV+ + A + +D
Sbjct: 517 GKSVVCSDITQNAVICAEHQKFLKLLELLGMYYEEGSSIVFVDKQEKADDI------VDQ 570
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINY 198
+ G + +A ++ + R+ I +F+ I ++VA+ ARG+DV+N+ +V+NY
Sbjct: 571 LMRTGYNS---VAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNY 627
Query: 199 EAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P++ + Y+HR+GRT R GR+G + T V
Sbjct: 628 DCPNHYEDYVHRVGRTGRAGRKGYAYTFV 656
Score = 37 (18.1 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 22 RP--QRLLFSATLSHDPEKLHQLSLFQP 47
RP Q +LFSAT E L + L +P
Sbjct: 483 RPDKQTVLFSATFPRHMEALARKVLDKP 510
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 173 (66.0 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 39/134 (29%), Positives = 74/134 (55%)
Query: 96 STNLKPLVLYQLIR-KHAMQGVL-CFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEV 153
+ +L L + +R ++ + VL C T+ A +DN+ + +A +
Sbjct: 412 AASLNVLQELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYEYLLVKGVEVASI 471
Query: 154 YSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGR 213
+ R+ I+ FR+ + D++VA+D ++G+D + I+ VIN++ P++I+ Y+HRIGR
Sbjct: 472 HGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIENYVHRIGR 531
Query: 214 TARGGRQGTSVTLV 227
T R GR+G + T +
Sbjct: 532 TGRSGRKGLATTFI 545
Score = 41 (19.5 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 16 FLTYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
F + ++ Q LLFSAT+ + + +L +P
Sbjct: 371 FYFFKAQRQTLLFSATMPRKIQFFAKSALVKP 402
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 176 (67.0 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 42/124 (33%), Positives = 71/124 (57%)
Query: 110 KHAMQG--VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQ 167
K M G +L FV T +G ++ R L +D +A ++ D +R++++
Sbjct: 405 KQLMDGSKILIFVETKRGCDQVTRQLR-MDGWPA--------LA-IHGDKTQSERDRVLA 454
Query: 168 EFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
EF+ + ++ A+D ARG+DV++I V+NY+ P+ ++ YIHRIGRT R G +G + T
Sbjct: 455 EFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFF 514
Query: 228 TTHE 231
T H+
Sbjct: 515 T-HD 517
Score = 37 (18.1 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P R Q LL+SAT + E L + L P
Sbjct: 342 PDR-QTLLWSATWPREVETLARQFLRDP 368
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 174 (66.3 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 31/85 (36%), Positives = 56/85 (65%)
Query: 147 KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKK 206
++++ ++ +L +R + + +FR+ +I +++A+D LARGID + +VIN++ P ++
Sbjct: 312 EIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHS 371
Query: 207 YIHRIGRTARGGRQGTSVTLVTTHE 231
YIHRIGRT R G G +VT T +
Sbjct: 372 YIHRIGRTGRAGNTGQAVTFFTKED 396
Score = 36 (17.7 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 14/66 (21%), Positives = 26/66 (39%)
Query: 27 LFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIGKFTTPA 86
LFSAT+ E+L ++ P ++ A T G+D + + +
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNG 285
Query: 87 ELSEKL 92
EL ++
Sbjct: 286 ELKPRV 291
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 171 (65.3 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 40/125 (32%), Positives = 67/125 (53%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L L RK + + F N+ Q LA+ + I + ++S + + RN
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIG----------YSCYYIHSKMAQNHRN 320
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
++ +FR+ +V SD L RGID++ ++VVIN++ P N + Y+HRIGR+ R G G +
Sbjct: 321 RVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVA 380
Query: 224 VTLVT 228
+ L+T
Sbjct: 381 INLIT 385
Score = 37 (18.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 14 DTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQ 63
D + + P Q +L+SAT + Q + +P + E G TQ
Sbjct: 207 DRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQ 257
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 171 (65.3 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 40/125 (32%), Positives = 67/125 (53%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L L RK + + F N+ Q LA+ + I + ++S + + RN
Sbjct: 271 LNTLFRKLQINQSIIFCNSTQRVELLAKKITEIG----------YSCYYIHSKMAQNHRN 320
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTS 223
++ +FR+ +V SD L RGID++ ++VVIN++ P N + Y+HRIGR+ R G G +
Sbjct: 321 RVFHDFRQGNCRNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVA 380
Query: 224 VTLVT 228
+ L+T
Sbjct: 381 INLIT 385
Score = 37 (18.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 14 DTFLTY-PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQ 63
D + + P Q +L+SAT + Q + +P + E G TQ
Sbjct: 207 DRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEELTLLGVTQ 257
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 176 (67.0 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 35/93 (37%), Positives = 55/93 (59%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+DN+ + ++ D +R+ +++EFR K +++VA+D ARG+DV+ I V
Sbjct: 543 VDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYV 602
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
IN++ P N + YIHRIGRT R +GTS T
Sbjct: 603 INFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFT 635
Score = 39 (18.8 bits), Expect = 6.0e-14, Sum P(2) = 6.0e-14
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 84 TPAELSEKLTTCSTNLK 100
TP L + L+ STNLK
Sbjct: 411 TPGRLIDFLSAGSTNLK 427
>SGD|S000005321 [details] [associations]
symbol:DBP6 "Essential protein involved in ribosome
biogenesis" species:4932 "Saccharomyces cerevisiae" [GO:0000463
"maturation of LSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0030687
"preribosome, large subunit precursor" evidence=IDA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0000466
"maturation of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000005321
GO:GO:0005524 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0030687 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000463 GO:GO:0008026 eggNOG:COG0513 GO:GO:0000466 KO:K14807
HOGENOM:HOG000203294 OrthoDB:EOG490BK3 EMBL:Z71653 PIR:S63369
RefSeq:NP_014436.1 ProteinModelPortal:P53734 SMR:P53734
IntAct:P53734 MINT:MINT-2731978 STRING:P53734 PaxDb:P53734
PeptideAtlas:P53734 PRIDE:P53734 EnsemblFungi:YNR038W GeneID:855774
KEGG:sce:YNR038W CYGD:YNR038w GeneTree:ENSGT00550000075141
OMA:SSREYVH NextBio:980232 Genevestigator:P53734 GermOnline:YNR038W
Uniprot:P53734
Length = 629
Score = 190 (71.9 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 66/229 (28%), Positives = 112/229 (48%)
Query: 14 DTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGTGDTQPTSSEAGADN 73
D T P +++FSATL+ + EKL+ L+L++PKLF D
Sbjct: 365 DKLDTLPGNVIKMIFSATLTTNTEKLNGLNLYKPKLFLKQT-----------------DK 407
Query: 74 LSSGFIGKFTTPAELSEKLTTCSTNLKPLVL-YQLIR--KHA--MQGVLCFVNTAQGAHR 128
L K E + + T + KPL+L Y + + H+ +L FV + + + R
Sbjct: 408 LYQ-LPNKLN---EFNINIPTAKSVYKPLILLYSICQFMAHSPIAAKILIFVKSNESSIR 463
Query: 129 LARLLHHIDNVATKGAGTK--MNIA----EVYSDLKFDQRNKIIQEFRRRK----IDLVV 178
L++LL I ++ + K N+A V S+ + KI+ F I +++
Sbjct: 464 LSKLLQLICESRSQSSVLKNLQNLAVSINSVNSNNSKAENKKIVANFSHHSESAGITILI 523
Query: 179 ASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+D ++RGID+ +I VINY+ P + ++Y+HR+GRTAR G++ L+
Sbjct: 524 TTDIMSRGIDINDITQVINYDPPMSSQQYVHRVGRTARANELGSAYNLL 572
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 186 (70.5 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 34/93 (36%), Positives = 60/93 (64%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D++ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 285 VDWLTEKMHARDFTVSALHGDMEQKERDVIMKEFRSGSSRVLITTDLLARGIDVQQVSLV 344
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
INY+ P N + YIHRIGR R GR+G ++ ++T
Sbjct: 345 INYDLPTNRENYIHRIGRGGRFGRKGVAINMIT 377
>POMBASE|SPBC543.06c [details] [associations]
symbol:dbp8 "ATP-dependent RNA helicase Dbp8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC543.06c GO:GO:0005524 GO:GO:0005730
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ OrthoDB:EOG4PP1RW
RefSeq:NP_596794.1 ProteinModelPortal:Q9HGM5 STRING:Q9HGM5
EnsemblFungi:SPBC543.06c.1 GeneID:2541069 KEGG:spo:SPBC543.06c
NextBio:20802183 Uniprot:Q9HGM5
Length = 453
Score = 187 (70.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 44/151 (29%), Positives = 83/151 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQL--IRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVA 140
+ P+ L + S+ ++ L L I ++A + + FVN R A L++ I +
Sbjct: 226 SVPSTLQQSYIFVSSQVREAYLVHLLTIPENAKKSAIIFVNRT----RTAELIYSILRLL 281
Query: 141 TKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA 200
++ + E++S++ +R + FR ++VA+D +RG+D+ ++ +VIN++
Sbjct: 282 ------ELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDL 335
Query: 201 PDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
P + YIHR+GRTAR GR G S+++VT +
Sbjct: 336 PRDPDDYIHRVGRTARAGRSGESISIVTERD 366
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 187 (70.9 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 45/146 (30%), Positives = 80/146 (54%)
Query: 83 TTPAELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATK 142
TT ++ + + + K +L +LI + Q VL F T + A+ LA+ L +D +
Sbjct: 231 TTSGKIKQAVYWVTEERKRELLSELIGVNNWQQVLVFAGTKESANTLAKELK-LDGIKA- 288
Query: 143 GAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPD 202
A + D RNK +++F K+ ++VA+D ARG+D+ ++ V+N+ P
Sbjct: 289 --------ALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLAFVVNFHLPF 340
Query: 203 NIKKYIHRIGRTARGGRQGTSVTLVT 228
+ Y+HR+GRT R G+ GT+++LV+
Sbjct: 341 LPEDYVHRVGRTGRAGKSGTAISLVS 366
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 177 (67.4 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQG 221
R + I + + + ++VA+D +RG+D+E+I VINY+ P NI++Y+HR+GRT R GRQG
Sbjct: 568 REQAIADIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQG 627
Query: 222 TSVTLVTTHE 231
TS++ T +
Sbjct: 628 TSISFFTRED 637
Score = 37 (18.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 64 PTSSEAGADN 73
PTSSE+ DN
Sbjct: 192 PTSSESNKDN 201
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 174 (66.3 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 32/89 (35%), Positives = 56/89 (62%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K+ ++ D + +R +++FR + ++VA+ ARG+D+EN+ VI
Sbjct: 552 DFIATFLCQEKVPSTSIHGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVI 611
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
N++ PD+I +Y+HRIGRT R G G +++
Sbjct: 612 NFDIPDDIDEYVHRIGRTGRCGNTGRAIS 640
Score = 40 (19.1 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAG 58
PS+ +R L+FSAT + L + L LF V + G
Sbjct: 468 PSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGG 508
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 186 (70.5 bits), Expect = 8.5e-14, P = 8.5e-14
Identities = 35/97 (36%), Positives = 64/97 (65%)
Query: 133 LHHI-DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVEN 191
LH + D++A+ + + ++ D + R + + +F++ K+ ++VA+D +RG+DV +
Sbjct: 306 LHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATDLASRGLDVHD 365
Query: 192 IDVVINYEAPDNIKKYIHRIGRTARGGRQGTSVTLVT 228
I V N++ P NI++Y+HR+GRT R GR G +VTL+T
Sbjct: 366 ITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLIT 402
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 168 (64.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 33/93 (35%), Positives = 55/93 (59%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 539 DFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVI 598
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
N+ P I +Y+HRIGRT R G G +++ T
Sbjct: 599 NFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 631
Score = 54 (24.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR LLFSAT + ++L L LF +V + G D Q + + G
Sbjct: 455 PSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVG 508
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 168 (64.2 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 33/93 (35%), Positives = 55/93 (59%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 539 DFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVI 598
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTT 229
N+ P I +Y+HRIGRT R G G +++ T
Sbjct: 599 NFNLPSTIDEYVHRIGRTGRCGNTGRAISFFDT 631
Score = 54 (24.1 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR LLFSAT + ++L L LF +V + G D Q + + G
Sbjct: 455 PSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVG 508
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 189 (71.6 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 44/149 (29%), Positives = 82/149 (55%)
Query: 79 IGK--FTTPAELSEK-LTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHH 135
IGK T + + + + S ++K +L L + +L F +T + L + L +
Sbjct: 563 IGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDTKRNCDNLCKELRY 622
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+ N ++ D + +R++I+ ++ + +++VA+D +RG+D++NI VV
Sbjct: 623 ----------HQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNISVV 672
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSV 224
INY+ P+ I+ YIHRIGRT R G++G S+
Sbjct: 673 INYDIPNTIEDYIHRIGRTGRAGKKGKSI 701
>WB|WBGene00022378 [details] [associations]
symbol:Y94H6A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0040010 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455
OMA:FYIPYRP GeneTree:ENSGT00550000075100 EMBL:FO081810
GeneID:177054 KEGG:cel:CELE_Y94H6A.5 UCSC:Y94H6A.5a CTD:177054
NextBio:895136 RefSeq:NP_741347.2 ProteinModelPortal:Q688Z4
SMR:Q688Z4 STRING:Q688Z4 PRIDE:Q688Z4 EnsemblMetazoa:Y94H6A.5b
WormBase:Y94H6A.5b InParanoid:Q688Z4 ArrayExpress:Q688Z4
Uniprot:Q688Z4
Length = 871
Score = 173 (66.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/147 (30%), Positives = 73/147 (49%)
Query: 87 ELSEKLTTCSTNLKPLVLYQLIRKHAMQG--VLCFVNTAQGAHRLARLLHHIDNVATKGA 144
+LS C + K L L R+ + + F T + + +LH A
Sbjct: 237 KLSMVFCMCRPDEKLFALLHLCRRMDRENKQTVVFCATMKHVEYVVGILHR--------A 288
Query: 145 GTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNI 204
G ++ + VYS L R IQ+F ++ +++V +D ARG+D+ +D VIN P
Sbjct: 289 G--IDCSFVYSQLDATARKMNIQKFHEKQNNILVVTDVAARGVDIPLLDTVINLHFPPKA 346
Query: 205 KKYIHRIGRTARGGRQGTSVTLVTTHE 231
K ++HR+GR AR GR GT+++L+ E
Sbjct: 347 KLFVHRVGRVARAGRSGTAISLIANDE 373
Score = 42 (19.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 14 DTFLTYPSRPQRLLFSATL 32
+T P Q LLFSATL
Sbjct: 190 ETLKRIPESRQTLLFSATL 208
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 167 (63.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 32/89 (35%), Positives = 55/89 (61%)
Query: 137 DNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI 196
D +AT K++ ++ D + +R + + +FR K ++VA+ ARG+D+EN+ VI
Sbjct: 534 DFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVI 593
Query: 197 NYEAPDNIKKYIHRIGRTARGGRQGTSVT 225
N++ P I +Y+HRIGRT R G G +++
Sbjct: 594 NFDLPSTIDEYVHRIGRTGRCGNTGRAIS 622
Score = 57 (25.1 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 20 PSRPQR--LLFSATLSHDPEKLHQLSLFQPKLFTSVVEPAGT-GDTQPTSSEAG 70
PS+ QR L+FSAT + ++L L LF +V + G D Q T + G
Sbjct: 450 PSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVG 503
Score = 40 (19.1 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 35 DPEKLHQLS--LFQPKLFTSVVEPAGTGDTQPTSSEAGADNLSSGFIG 80
DP++ Q + LF + V+ G GDT + S +G++ G+ G
Sbjct: 150 DPDECMQRTGGLFGSR--RPVLSGTGNGDTSQSRSGSGSER--GGYKG 193
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/96 (36%), Positives = 59/96 (61%)
Query: 136 IDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVV 195
+D + K ++ ++ D+ +R+ I++EFR +++ +D LARGIDV+ + +V
Sbjct: 286 VDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV 345
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
INY+ P N + YIHRIGR R GR+G ++ VT +
Sbjct: 346 INYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEED 381
WARNING: HSPs involving 549 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.390 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 231 231 0.00084 113 3 11 22 0.39 33
32 0.42 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 799
No. of states in DFA: 594 (63 KB)
Total size of DFA: 164 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.86u 0.09s 20.95t Elapsed: 00:00:07
Total cpu time: 20.90u 0.09s 20.99t Elapsed: 00:00:07
Start: Thu Aug 15 11:01:03 2013 End: Thu Aug 15 11:01:10 2013
WARNINGS ISSUED: 2