RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9509
(231 letters)
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 86.9 bits (215), Expect = 6e-21
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 7/153 (4%)
Query: 80 GKFTTP-AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHID- 137
G T P + E + + + + L F ++ + LA L +
Sbjct: 2 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGI 61
Query: 138 NVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARG---IDVENIDV 194
N G +++ D+ + + D V+ + ++
Sbjct: 62 NAVAYYRGLDVSVIPTSGDVVVVATD-ALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFT 120
Query: 195 VINYEAPDNIKKYIHRIGRTARGGRQGTSVTLV 227
+ P + R GRT R G+ G +
Sbjct: 121 IETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVA 152
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 82.3 bits (202), Expect = 2e-19
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 103 VLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQR 162
++ + +++ ++ F N + A ++ L A + G + L ++
Sbjct: 151 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEND--RGLSQREQ 208
Query: 163 NKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGRQGT 222
I+ EF R + +++VA+ G+DV +D+V+ YE + + I R GRT R G
Sbjct: 209 KLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGR 267
Query: 223 SVTLVTTHE 231
+ L+
Sbjct: 268 VIILMAKGT 276
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 74.6 bits (182), Expect = 4e-17
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K L +++ +H ++ F + +R+++ I +
Sbjct: 80 KIRKLREILERHRKDKIIIFTRHNELVYRISK---------------VFLIPAITHRTSR 124
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
++R +I++ FR + +V+S L GIDV + +V + + ++YI R+GR R +
Sbjct: 125 EEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184
Query: 220 QGTSVTLVT 228
L
Sbjct: 185 GKKEAVLYE 193
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 72.9 bits (178), Expect = 4e-16
Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 26/139 (18%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
+ L ++ K G + + T + A + L + +
Sbjct: 8 AVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKN----------------KFR 50
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVA----SDNLARGIDV-ENIDVVINYEAPDNIKKYIH 209
+ + ++F +ID ++ L RG+D+ E I + P +
Sbjct: 51 IGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS----FRV 106
Query: 210 RIGRTARGGRQGTSVTLVT 228
I Q +
Sbjct: 107 TIEDIDSLSPQMVKLLAYL 125
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 68.0 bits (165), Expect = 5e-15
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K L L ++ + F NT + L L + K ++ +YSDL
Sbjct: 14 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND----------KFTVSAIYSDLPQ 63
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+R+ I++EFR +++++D LARGIDV+ + +VINY+ P N + YIHRIGR R GR
Sbjct: 64 QERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 123
Query: 220 QGTSVTLVTTHE 231
+G ++ VT +
Sbjct: 124 KGVAINFVTNED 135
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 66.9 bits (162), Expect = 1e-14
Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 11/146 (7%)
Query: 86 AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAG 145
A + + + N + L +L++ G L F T + LA +L I
Sbjct: 2 ANIEQSYVEVNENERFEALCRLLKNKEFYG-LVFCKTKRDTKELASMLRDIG-------- 52
Query: 146 TKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIK 205
++ DL QR K+I+ F+++KI +++A+D ++RGIDV +++ VINY P N +
Sbjct: 53 --FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 110
Query: 206 KYIHRIGRTARGGRQGTSVTLVTTHE 231
Y+HRIGRT R G++G +++++ E
Sbjct: 111 SYMHRIGRTGRAGKKGKAISIINRRE 136
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 63.8 bits (154), Expect = 2e-13
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K L L + + F NT + L + + ++ ++ D+
Sbjct: 21 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREAN----------FTVSSMHGDMPQ 70
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+R I++EFR +++++D ARG+DV + ++INY+ P+N + YIHRIGR+ R GR
Sbjct: 71 KERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 130
Query: 220 QGTSVTLVTTHE 231
+G ++ V +
Sbjct: 131 KGVAINFVKNDD 142
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 62.1 bits (150), Expect = 1e-12
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRN 163
L IR+ + V T +++ + +A ++S++K +R
Sbjct: 20 LIGEIRERVERNERTLVTTLTK--------KMAEDLTDYLKEAGIKVAYLHSEIKTLERI 71
Query: 164 KIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHR--IGRTARGGRQG 221
+II++ R K D++V + L G+D+ + +V +A R I R R
Sbjct: 72 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
Query: 222 T 222
Sbjct: 132 N 132
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 62.4 bits (150), Expect = 1e-12
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 10/132 (7%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
L + +++ + + + N+ A L A A ++ L+
Sbjct: 17 PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISA----------AAYHAGLEN 66
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGGR 219
+ R + ++F+R + +VVA+ GI+ N+ V++++ P NI+ Y GR R G
Sbjct: 67 NVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL 126
Query: 220 QGTSVTLVTTHE 231
++ +
Sbjct: 127 PAEAMLFYDPAD 138
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 60.1 bits (145), Expect = 2e-12
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 23/156 (14%)
Query: 80 GKFTTP-AELSEKLTTCSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDN 138
G T P + E + + + + L F ++ + LA L
Sbjct: 1 GSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLV---- 56
Query: 139 VATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDV---V 195
+ + R + +VVA+D L G + V
Sbjct: 57 -------------ALGINAVAYYRGLDVSVIPTNGDVVVVATDALMTGFTGDFDSVIDCN 103
Query: 196 INYEAPDNIKKYIHRIGRTARGGRQGTSVTLVTTHE 231
+ P + R GRT R G+ G V E
Sbjct: 104 TSDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 57.2 bits (137), Expect = 8e-11
Identities = 34/163 (20%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 100 KPLVLYQLIRKHAMQG--VLCFVNTAQGAHRLARLLHHIDNVATKGAGT----------- 146
+ + +L+ + + VL F +T +GA + A L I + G
Sbjct: 25 RRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGE 84
Query: 147 ---------KMNIAEVYSDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVI- 196
+ A ++ L QR + FRR I +VVA+ LA G+++ V++
Sbjct: 85 MSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVR 144
Query: 197 ------NYEAPDNIKKYIHRIGRTARGGR--QGTSVTLVTTHE 231
Y + +Y GR R G +G ++ +V +
Sbjct: 145 SLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 55.4 bits (132), Expect = 2e-10
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Query: 100 KPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKF 159
K L + + + F T + A L + ++ + +L
Sbjct: 19 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG----------HQVSLLSGELTV 68
Query: 160 DQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAP------DNIKKYIHRIGR 213
+QR IIQ FR K +++ ++ ARGIDV+ + +V+N++ P + + Y+HRIGR
Sbjct: 69 EQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGR 128
Query: 214 TARGGRQGTSVTLVTTHE 231
T R G++G + ++ E
Sbjct: 129 TGRFGKKGLAFNMIEVDE 146
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 51.8 bits (123), Expect = 1e-08
Identities = 11/134 (8%), Positives = 30/134 (22%), Gaps = 25/134 (18%)
Query: 110 KHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEF 169
+ FV + + + +A L + ++ + K
Sbjct: 175 TDFKGKTVWFVPSIKAGNDIAACLRKNG----------KKVIQLSRKTFDSEYIKTRTND 224
Query: 170 RRRKIDLVVASDNLARGIDV-----ENIDVVINYEAPDNIKK----------YIHRIGRT 214
+ ++ + + VI + + + R GR
Sbjct: 225 WDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRV 284
Query: 215 ARGGRQGTSVTLVT 228
R + +
Sbjct: 285 GRNPKNENDQYIYM 298
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 49.3 bits (117), Expect = 3e-08
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
Query: 104 LYQLIRKHAMQG--VLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQ 161
L + IR+ A +G L V T + A L L A ++ +L +
Sbjct: 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRA----------RYLHHELDAFK 69
Query: 162 RNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEA-----PDNIKKYIHRIGRTAR 216
R +I++ R D +V + L G+D+ + +V +A + + I IGR AR
Sbjct: 70 RQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 129
Query: 217 GGR 219
R
Sbjct: 130 NAR 132
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.4 bits (106), Expect = 7e-07
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 95 CSTNLKPLVLYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVY 154
N K L+ L+ V+ FV + Q LA+LL + ++
Sbjct: 9 LKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN----------FPAIAIH 58
Query: 155 SDLKFDQRNKIIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRT 214
+ ++R Q+F+ + ++VA++ RG+D+E +++ NY+ P++ Y+HR+ R
Sbjct: 59 RGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 118
Query: 215 ARGGRQGTSVTLVTTHE 231
R G +G ++T V+
Sbjct: 119 GRFGTKGLAITFVSDEN 135
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 38.3 bits (88), Expect = 4e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 11 IMWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPKLFT 51
I+ ++ + Q L+FSAT + +KL L+ T
Sbjct: 196 IIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMT 236
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 38.0 bits (88), Expect = 6e-04
Identities = 17/137 (12%), Positives = 40/137 (29%), Gaps = 35/137 (25%)
Query: 105 YQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNK 164
+ I F+ + + A+ +A L + AG + + +
Sbjct: 29 HDWILADKRP-TAWFLPSIRAANVMAASL--------RKAGKS--VVVLNRKT----FER 73
Query: 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKY----------------- 207
+++K D ++A+D G ++ ++ V++
Sbjct: 74 EYPTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 132
Query: 208 --IHRIGRTARGGRQGT 222
R GR R +
Sbjct: 133 SAAQRRGRIGRNPNRDG 149
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 36.2 bits (82), Expect = 0.002
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPKLFTSVV 54
P Q L+FSAT+ + + + P F V+
Sbjct: 176 PKDLQMLVFSATIPEKLKPFLKKYMENPT-FVHVL 209
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 36.0 bits (82), Expect = 0.002
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q +L SATL H+ ++ + P
Sbjct: 188 PPATQVVLISATLPHEILEMTNKFMTDP 215
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 35.3 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
P Q LLFSAT ++ L +P
Sbjct: 172 PPTHQSLLFSATFPLTVKEFMVKHLHKPY 200
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 35.3 bits (80), Expect = 0.003
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 12 MWDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQP 47
M D LT P Q LL+SAT +K L +P
Sbjct: 167 MEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKP 202
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 35.2 bits (80), Expect = 0.003
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
P Q +L SAT+ +D ++ + P
Sbjct: 180 PPTTQVVLLSATMPNDVLEVTTKFMRNP 207
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 34.8 bits (79), Expect = 0.004
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQP 47
S Q +L SAT+ D ++ + + P
Sbjct: 184 NSNTQVVLLSATMPSDVLEVTKKFMRDP 211
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 34.9 bits (79), Expect = 0.005
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
P Q ++FSATLS + + + + P
Sbjct: 175 PHEKQVMMFSATLSKEIRPVCRKFMQDPM 203
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 33.5 bits (75), Expect = 0.014
Identities = 6/45 (13%), Positives = 11/45 (24%), Gaps = 2/45 (4%)
Query: 10 VIMWDTFLTYPSRPQRLLFSATLSHDPEK--LHQLSLFQPKLFTS 52
+ +AT + + L L P + S
Sbjct: 162 YAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS 206
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 31.6 bits (71), Expect = 0.055
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 20 PSRPQRLLFSATLSHDPEKLHQLSLFQPK 48
+ LLFSAT+ + L + +
Sbjct: 174 NKDKRILLFSATMPREILNLAKKYMGDYS 202
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 27.1 bits (60), Expect = 0.56
Identities = 13/74 (17%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 104 LYQLIRKHAMQGVLCFVNTAQGAHRLARLLHHIDNVAT-----KGAGTKMNIAEVYSDLK 158
L L+R M+ + +V+ +G + H + +A KG KM ++ L+
Sbjct: 8 LLDLLRSGDMKDSIWWVDKDKGTFQF--SSKHKEALAHRWGIQKGNRKKMTYEKMARALR 65
Query: 159 FDQRNKIIQEFRRR 172
+ +++ +++
Sbjct: 66 NYGKTGEVKKVKKK 79
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 27.0 bits (58), Expect = 1.4
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 10 VIMWDTFLTYPSRPQRLLFSATLSHDPEKLHQL 42
V + + P + +A+ PEK+ ++
Sbjct: 144 VFIAREYKRQAKNPLVIGLTASPGSTPEKIMEV 176
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 27.2 bits (59), Expect = 1.5
Identities = 3/20 (15%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
+ + SAT + ++
Sbjct: 170 NKALRVIGLSATAP-NVTEI 188
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 26.8 bits (59), Expect = 2.6
Identities = 5/30 (16%), Positives = 8/30 (26%)
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
+ D + K T +L E
Sbjct: 504 VEKGHGDLKDKPWWPKLQTLEDLVEVCLII 533
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 175
Score = 26.4 bits (58), Expect = 2.7
Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 20/123 (16%)
Query: 114 QGVLCFVNTAQGAHRLARLLHHIDNVATKGAGTKMNIAEVYSDLKFDQRNKIIQEFRRRK 173
Q VL + + +++LL + + + + + I + ++
Sbjct: 35 QPVLVGTVAVETSELISKLLKN----------KGIPHQVLNAKNHEREAQIIEEAGQKGA 84
Query: 174 IDLVVASDNLARGIDVENIDVVINY--------EAPDNIKKYIHRIGRTARGGRQGTSVT 225
+ +A++ RG D++ + V E ++ + GR+ R G G +
Sbjct: 85 V--TIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQF 142
Query: 226 LVT 228
++
Sbjct: 143 YLS 145
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 25.8 bits (56), Expect = 2.8
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 165 IIQEFRRRKIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYIHRIGRTARGG 218
I + R + + ++ ++++ D I ++ RT GG
Sbjct: 81 IYPKLRESGWQGYWIDAASSLRMK-DDAIIILDPVNQDVITDGLNNGIRTFVGG 133
>d2ex0a1 c.87.1.9 (A:26-412)
Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
multocida [TaxId: 747]}
Length = 387
Score = 26.0 bits (57), Expect = 4.2
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 13 WDTFLTYPSRPQRLLFSATLSHDPEKLHQLSLFQPK-LFTSVVEPAGTGDTQPTSSE 68
W + Q + + E L + Q K +FT G D + ++
Sbjct: 202 WTAYQQLTPEQQAFYLTLV-GFNDEVKQSLEVQQAKFIFTGTTTWEGNTDVREYYAQ 257
>d1ekga_ d.82.2.1 (A:) C-terminal domain of frataxin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 119
Score = 24.8 bits (54), Expect = 5.5
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 173 KIDLVVASDNLARGIDVENIDVVINYEAPDNIKKYI 208
+ + DV V+ + ++ Y+
Sbjct: 20 FFEDLADKPYTFEDYDVSFGSGVLTVKLGGDLGTYV 55
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 25.7 bits (56), Expect = 6.4
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 66 SSEAGADNLSSGFIGKFTTPAELSEKLTTC 95
+ GF + A+ +T C
Sbjct: 392 TEIGLQGAQKQGFPTSLQSVAQACHFVTMC 421
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 25.2 bits (54), Expect = 7.0
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 20 PSRPQRLLFSATLSHDPEKL 39
+R ++ +AT +
Sbjct: 202 EARGCLMVSTATAKKGKKAE 221
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 825,699
Number of extensions: 36745
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 40
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)