BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy951
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 133 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 191
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ G G+ I D+ +
Sbjct: 192 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 248
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
P + A+ QR +A NPC CSHLCL+ P YQCACP
Sbjct: 249 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 292
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 133 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 191
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ G G+ I D+ +
Sbjct: 192 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 248
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
P + A+ QR +A NPC CSHLCL+ P YQCACP
Sbjct: 249 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 292
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A +DGS R LV T + P GL++D + +YW D+K + IE +
Sbjct: 441 MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYD-EGKIYWGDAKTDKIEVMN 499
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG R+ ++ DK+ H + + +YW S+ + K V+I + L +
Sbjct: 500 TDGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDL 556
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIPGGYQCACP 160
G+KA + R S NPC++ CSHLCL P G +CACP
Sbjct: 557 MGLKATNVHRVIGS--NPCAEENGGCSHLCLYRPQGLRCACP 596
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
I +++DGS + +V + HP G++VD LYW D+ + IE R +G R+ ++S
Sbjct: 365 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTMRKILIS 423
Query: 72 GSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF---GRGVPVLISKDLVNPSGV 123
+ I LD +YW D G + K ++ G VL++ L P+G+
Sbjct: 424 EDLEEPRAIVLDPMVGYMYW--TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGL 476
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 316 FRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIE 372
F D++ D R A+D DPV+ IYW D R IRRSF+ G V + +
Sbjct: 330 FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI--DGSGSQFVVTAQIAHPD 387
Query: 373 ALDIDPVDEIIYWVDS 388
+ +D V +YW D+
Sbjct: 388 GIAVDWVARNLYWTDT 403
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 25 LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP--ISL 82
L + +RH + D ++ +YW D ++ I DG Q +++ ++ HP I++
Sbjct: 335 LQLEDIRHAIAIDYDP-VEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA--QIAHPDGIAV 391
Query: 83 DVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
D N+YW T + G +LIS+DL P +
Sbjct: 392 DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAI 432
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 347 NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV 406
++RR + + + D R A+D DPV+ IYW D R IRRSF+ + V
Sbjct: 319 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 378
Query: 407 QAGASRHQNGVPAS-SQRNL 425
H +G+ RNL
Sbjct: 379 VTAQIAHPDGIAVDWVARNL 398
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 194
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ G G+ I D+ +
Sbjct: 195 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 251
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
P + A+ QR +A NPC CSHLCL+ P YQCACP
Sbjct: 252 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 295
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/165 (40%), Positives = 94/165 (56%), Gaps = 10/165 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 199
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLVN 119
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ G G+ I D+ +
Sbjct: 200 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLRE-IHSDIFS 256
Query: 120 PSGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGG--YQCACP 160
P + A+ QR +A NPC CSHLCL+ P YQCACP
Sbjct: 257 PMDIHAFSQQR-QPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300
Score = 91.7 bits (226), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A +DGS R LV T + P GL++D + +YW D+K + IE +
Sbjct: 449 MYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYD-EGKIYWGDAKTDKIEVMN 507
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG R+ ++ DK+ H + + +YW S+ + K V+I + L +
Sbjct: 508 TDGTGRRVLVE--DKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQ-LPDL 564
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIPGGYQCACP 160
G+KA + R S NPC++ CSHLCL P G +CACP
Sbjct: 565 MGLKATNVHRVIGS--NPCAEENGGCSHLCLYRPQGLRCACP 604
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
I +++DGS + +V + HP G++VD LYW D+ + IE R +G R+ ++S
Sbjct: 373 IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVA-RNLYWTDTGTDRIEVTRLNGTMRKILIS 431
Query: 72 GSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF---GRGVPVLISKDLVNPSGV 123
+ I LD +YW D G + K ++ G VL++ L P+G+
Sbjct: 432 EDLEEPRAIVLDPMVGYMYW--TDWGEIPKIERAALDGSDRVVLVNTSLGWPNGL 484
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 316 FRDVI---SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIE 372
F D++ D R A+D DPV+ IYW D R IRRSF+ G V + +
Sbjct: 338 FTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFI--DGSGSQFVVTAQIAHPD 395
Query: 373 ALDIDPVDEIIYWVDS 388
+ +D V +YW D+
Sbjct: 396 GIAVDWVARNLYWTDT 411
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 25 LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHP--ISL 82
L + +RH + D ++ +YW D ++ I DG Q +++ ++ HP I++
Sbjct: 343 LQLEDIRHAIAIDYDP-VEGYIYWTDDEVRAIRRSFIDGSGSQFVVTA--QIAHPDGIAV 399
Query: 83 DVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
D N+YW T + G +LIS+DL P +
Sbjct: 400 DWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAI 440
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 347 NIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV 406
++RR + + + D R A+D DPV+ IYW D R IRRSF+ + V
Sbjct: 327 DLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFV 386
Query: 407 QAGASRHQNGVPAS-SQRNL 425
H +G+ RNL
Sbjct: 387 VTAQIAHPDGIAVDWVARNL 406
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + G +PRIE++ MDGS RR + T + P GL++D A +YWVD+K + IE
Sbjct: 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 274
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG +R+ ++ S L HP ++ VFE+++YW T S+ +KF +I L P
Sbjct: 275 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 332
Query: 121 SGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGGYQCACP 160
+ H QR + N C + C+HLCL Y CACP
Sbjct: 333 MDIHTLHPQR-QPAGKNRCGDNNGGCTHLCLPSGQNYTCACP 373
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+FW++ RI A ++GS+ +V TG+ P GL+VD D LYW DS + IE
Sbjct: 130 VFWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVAN 187
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDLVN 119
DG +R+ +L S + I+L E IYW +T + G G ++ L
Sbjct: 188 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 247
Query: 120 PSGVKAYHAQR 130
P+G+ +A R
Sbjct: 248 PNGLTIDYAGR 258
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVD-SYDRNIRRSFMLEA 356
++++N +IR H+ + ++++ ALD E+++W D + DR +R +
Sbjct: 90 LLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL---- 145
Query: 357 QKGQVQAVISDERRIE-ALDIDPVDEIIYWVDS 388
V+ V+S L +D V + +YW DS
Sbjct: 146 NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS 178
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/162 (36%), Positives = 88/162 (54%), Gaps = 6/162 (3%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + G +PRIE++ MDGS RR + T + P GL++D A +YWVD+K + IE
Sbjct: 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 231
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG +R+ ++ S L HP ++ VFE+++YW T S+ +KF +I L P
Sbjct: 232 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 289
Query: 121 SGVKAYHAQRYNTSAPNPC--SQSPCSHLCLVIPGGYQCACP 160
+ H QR + N C + C+HLCL Y CACP
Sbjct: 290 MDIHTLHPQR-QPAGKNRCGDNNGGCTHLCLPSGQNYTCACP 330
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+FW++ RI A ++GS+ +V TG+ P GL+VD D LYW DS + IE
Sbjct: 87 VFWSDVTLD-RILRANLNGSNVEEVVSTGLESPGGLAVDWVHD-KLYWTDSGTSRIEVAN 144
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDLVN 119
DG +R+ +L S + I+L E IYW +T + G G ++ L
Sbjct: 145 LDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW 204
Query: 120 PSGVKAYHAQR 130
P+G+ +A R
Sbjct: 205 PNGLTIDYAGR 215
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 297 TIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVD-SYDRNIRRSFMLE 355
++++N +IR H+ + ++++ ALD E+++W D + DR +R +
Sbjct: 46 VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANL--- 102
Query: 356 AQKGQVQAVISDERRIE-ALDIDPVDEIIYWVDS 388
V+ V+S L +D V + +YW DS
Sbjct: 103 -NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDS 135
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W E G P+I+ A MDGS R +LV V GL++D A LYW D N IES
Sbjct: 137 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 194
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
G NR+ I +D L HP L +++ IYW S+ + +K +I L
Sbjct: 195 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
+ +H+ R S N C+ S CSHLCL +P GG+ C CP
Sbjct: 252 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 292
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 9 SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQT 68
SP+IE A +DG+ R L +G+ P L++D+ + L+W DS L IES G NR
Sbjct: 455 SPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK-LFWADSDLRRIESSDLSGANR-I 512
Query: 69 ILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHA 128
+L S+ LQ P+ L VFEN +YW+ + + K D GR + + S + A
Sbjct: 513 VLEDSNILQ-PVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 571
Query: 129 QRYNTSAPNPCSQSP--CSHLCLVI-PGGYQCACP 160
+PC+Q CSH+CLV G +C+CP
Sbjct: 572 LNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCP 606
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 42 MDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ------HPISLDVFENNIYWLARD 95
+D LYW+DS+ N I + DG T++ S Q + +S+D++ IYW
Sbjct: 350 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA 409
Query: 96 TGSLYKQDKFGRGVPVLISKDLVNPSGV 123
T + GR V V++ + P V
Sbjct: 410 TNVINVTRLDGRSVGVVLKGEQDRPRAV 437
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 27 MTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFE 86
+TGV+ + L D D+ +YW D L TI +G + ++ +++D
Sbjct: 33 LTGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91
Query: 87 NNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
N+YW T + G+ VL+ KDL +P +
Sbjct: 92 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL 128
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 13/59 (22%)
Query: 351 SFMLEAQKGQVQAVISDE-------------RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+F+L +QK + ++ DE R + A+D DP+D+ +YW+DS IR++
Sbjct: 309 TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA 367
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 298 IVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
+++S +IR + ET+ ++ + ALD D D IYW D + I R+FM
Sbjct: 9 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV 406
+ V D E + +D + + +YW D+ I S L+ Q QV
Sbjct: 69 SALEHVVEFGLDYP--EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV 116
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 320 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ--VQAVISDERRIEALD-- 375
I R + A+D DP+D+ +YW+DS IR++ +Q V +V S I+ D
Sbjct: 336 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 395
Query: 376 IDPVDEIIYW 385
ID IYW
Sbjct: 396 IDIYSRYIYW 405
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVR------HPTGLSVDAAMDHTLYWVDSKLN 54
++W ++ + I A DGS ++V++ V P LS+D + +YW N
Sbjct: 354 LYWIDSRQN-MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY-IYWTCEATN 411
Query: 55 TIESVRHDGRNRQTILSG 72
I R DGR+ +L G
Sbjct: 412 VINVTRLDGRSVGVVLKG 429
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 327 EALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWV 386
E + +D + + +YW D+ I S L+ Q QV V D AL +DP + +YW
Sbjct: 83 EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV-LVWKDLDSPRALALDPAEGFMYWT 140
Query: 387 D 387
+
Sbjct: 141 E 141
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W E G P+I+ A MDGS R +LV V GL++D A LYW D N IES
Sbjct: 135 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 192
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
G NR+ I +D L HP L +++ IYW S+ + +K +I L
Sbjct: 193 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 249
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
+ +H+ R S N C+ S CSHLCL +P GG+ C CP
Sbjct: 250 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 290
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 9 SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQT 68
SP+IE A +DG+ R L +G+ P L++D+ + L+W DS L IES G NR
Sbjct: 453 SPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK-LFWADSDLRRIESSDLSGANR-I 510
Query: 69 ILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHA 128
+L S+ LQ P+ L VFEN +YW+ + + K D GR + + S + A
Sbjct: 511 VLEDSNILQ-PVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 569
Query: 129 QRYNTSAPNPCSQSP--CSHLCLVI-PGGYQCACP 160
+PC+Q CSH+CLV G +C+CP
Sbjct: 570 LNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCP 604
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 42 MDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ------HPISLDVFENNIYWLARD 95
+D LYW+DS+ N I + DG T++ S Q + +S+D++ IYW
Sbjct: 348 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA 407
Query: 96 TGSLYKQDKFGRGVPVLISKDLVNPSGV 123
T + GR V V++ + P +
Sbjct: 408 TNVINVTRLDGRSVGVVLKGEQDRPRAI 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 24 SLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLD 83
++ +TGV+ + L D D+ +YW D L TI +G + ++ +++D
Sbjct: 28 AIPLTGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVD 86
Query: 84 VFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
N+YW T + G+ VL+ KDL +P +
Sbjct: 87 WLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL 126
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 13/59 (22%)
Query: 351 SFMLEAQKGQVQAVISDE-------------RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+F+L +QK + ++ DE R + A+D DP+D+ +YW+DS IR++
Sbjct: 307 TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA 365
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 298 IVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
+++S +IR + ET+ ++ + ALD D D IYW D + I R+FM
Sbjct: 7 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 66
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV 406
+ V D E + +D + + +YW D+ I S L+ Q QV
Sbjct: 67 SALEHVVEFGLDYP--EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV 114
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 320 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ--VQAVISDERRIEALD-- 375
I R + A+D DP+D+ +YW+DS IR++ +Q V +V S I+ D
Sbjct: 334 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 393
Query: 376 IDPVDEIIYW 385
ID IYW
Sbjct: 394 IDIYSRYIYW 403
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVR------HPTGLSVDAAMDHTLYWVDSKLN 54
++W ++ + I A DGS ++V++ V P LS+D + +YW N
Sbjct: 352 LYWIDSRQN-MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY-IYWTCEATN 409
Query: 55 TIESVRHDGRNRQTILSG 72
I R DGR+ +L G
Sbjct: 410 VINVTRLDGRSVGVVLKG 427
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 327 EALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWV 386
E + +D + + +YW D+ I S L+ Q QV V D AL +DP + +YW
Sbjct: 81 EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV-LVWKDLDSPRALALDPAEGFMYWT 138
Query: 387 D 387
+
Sbjct: 139 E 139
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 82/163 (50%), Gaps = 10/163 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W E G P+I+ A MDGS R +LV V GL++D A LYW D N IES
Sbjct: 142 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 199
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
G NR+ I +D L HP L +++ IYW S+ + +K +I L
Sbjct: 200 MLGLNREVI---ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 256
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIP-GGYQCACP 160
+ +H+ R S N C+ S CSHLCL +P GG+ C CP
Sbjct: 257 MDILVFHSSR--QSGWNECASSNGHCSHLCLAVPVGGFVCGCP 297
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 80/155 (51%), Gaps = 6/155 (3%)
Query: 9 SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQT 68
SP+IE A +DG+ R L +G+ P L++D+ + L+W DS L IES G NR
Sbjct: 460 SPKIERAALDGTEREVLFFSGLSKPIALALDSRLGK-LFWADSDLRRIESSDLSGANR-I 517
Query: 69 ILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHA 128
+L S+ LQ P+ L VFEN +YW+ + + K D GR + + S + A
Sbjct: 518 VLEDSNILQ-PVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKE 576
Query: 129 QRYNTSAPNPCSQSP--CSHLCLVI-PGGYQCACP 160
+PC+Q CSH+CLV G +C+CP
Sbjct: 577 LNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCP 611
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 42 MDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ------HPISLDVFENNIYWLARD 95
+D LYW+DS+ N I + DG T++ S Q + +S+D++ IYW
Sbjct: 355 LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEA 414
Query: 96 TGSLYKQDKFGRGVPVLISKDLVNPSGV 123
T + GR V V++ + P +
Sbjct: 415 TNVINVTRLDGRSVGVVLKGEQDRPRAI 442
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 27 MTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFE 86
+TGV+ + L D D+ +YW D L TI +G + ++ +++D
Sbjct: 38 LTGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 96
Query: 87 NNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
N+YW T + G+ VL+ KDL +P +
Sbjct: 97 KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL 133
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 13/59 (22%)
Query: 351 SFMLEAQKGQVQAVISDE-------------RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+F+L +QK + ++ DE R + A+D DP+D+ +YW+DS IR++
Sbjct: 314 TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKA 372
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)
Query: 298 IVYSNGPEIR--AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
+++S +IR + ET+ ++ + ALD D D IYW D + I R+FM
Sbjct: 14 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 73
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQV 406
+ V D E + +D + + +YW D+ I S L+ Q QV
Sbjct: 74 SALEHVVEFGLDYP--EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV 121
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 320 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQ--VQAVISDERRIEALD-- 375
I R + A+D DP+D+ +YW+DS IR++ +Q V +V S I+ D
Sbjct: 341 IHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLS 400
Query: 376 IDPVDEIIYW 385
ID IYW
Sbjct: 401 IDIYSRYIYW 410
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVR------HPTGLSVDAAMDHTLYWVDSKLN 54
++W ++ + I A DGS ++V++ V P LS+D + +YW N
Sbjct: 359 LYWIDSRQN-MIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY-IYWTCEATN 416
Query: 55 TIESVRHDGRNRQTILSG 72
I R DGR+ +L G
Sbjct: 417 VINVTRLDGRSVGVVLKG 434
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 327 EALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWV 386
E + +D + + +YW D+ I S L+ Q QV V D AL +DP + +YW
Sbjct: 88 EGMAVDWLGKNLYWADTGTNRIEVS-KLDGQHRQV-LVWKDLDSPRALALDPAEGFMYWT 145
Query: 387 D 387
+
Sbjct: 146 E 146
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 192
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
+ +H N + P N C S C +LCL P + CACP+
Sbjct: 253 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 303
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ + I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 44 IYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 101
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG-RGVPV--LI 113
G R+T+ + I +D +YW D G+ K K G GV + L+
Sbjct: 102 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW--TDWGTPAKIKKGGLNGVDIYSLV 159
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 160 TENIQWPNGI 169
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 358 K-GQVQAVIS-DERRIEALDIDPVDEIIYWVDS 388
VIS D + + L +D + IYW DS
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 96
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 216 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 274
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 334
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
+ +H N + P N C S C +LCL P + CACP+
Sbjct: 335 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 385
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ + I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 126 IYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 183
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG-RGVPV--LI 113
G R+T+ + I +D +YW D G+ K K G GV + L+
Sbjct: 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW--TDWGTPAKIKKGGLNGVDIYSLV 241
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 242 TENIQWPNGI 251
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 86 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 145
Query: 358 K-GQVQAVIS-DERRIEALDIDPVDEIIYWVDS 388
VIS D + + L +D + IYW DS
Sbjct: 146 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 178
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE--RPRPLPRVCQCQNGGMCAESE 201
CSH+C + GY+C CP+ VA+ RC E P ++C GG + E
Sbjct: 10 CSHVCNDLKIGYECLCPDG----FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 65
Query: 202 TG 203
G
Sbjct: 66 EG 67
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 256 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 314
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 315 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 374
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
+ +H N + P N C S C +LCL P + CACP+
Sbjct: 375 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 425
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ + I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 166 IYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 223
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG-RGVPV--LI 113
G R+T+ + I +D +YW D G+ K K G GV + L+
Sbjct: 224 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW--TDWGTPAKIKKGGLNGVDIYSLV 281
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 282 TENIQWPNGI 291
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 126 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 185
Query: 358 K-GQVQAVIS-DERRIEALDIDPVDEIIYWVDS 388
VIS D + + L +D + IYW DS
Sbjct: 186 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 218
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE--RPRPLPRVCQCQNGGMCAESE 201
CSH+C + GY+C CP+ VA+ RC E P ++C GG + E
Sbjct: 50 CSHVCNDLKIGYECLCPDG----FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 105
Query: 202 TG 203
G
Sbjct: 106 EG 107
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 90/172 (52%), Gaps = 13/172 (7%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 568
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 569 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 628
Query: 121 SGVKAYHAQRYNTSAPNPC-----SQSPCSHLCLVIPG------GYQCACPE 161
+ +H Q N C S C +LCL P + CACP+
Sbjct: 629 EDMVLFH-QLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 679
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ + I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 420 IYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 477
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG-RGVPV--LI 113
G R+T+ I +D +YW D G+ K K G GV + L+
Sbjct: 478 SVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYSLV 535
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 536 TENIQWPNGI 545
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 439
Query: 358 K-GQVQAVIS-DERRIEALDIDPVDEIIYWVDS 388
VIS D + + L +D + IYW DS
Sbjct: 440 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 472
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 19/81 (23%)
Query: 316 FRDVIS-DERRIEALDIDPVDEIIYWVDSY--------DRNIRRSFMLEAQKGQVQAVIS 366
+ VIS D + + L +D + IYW DS + ++R + Q + +A++
Sbjct: 444 YDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIV- 502
Query: 367 DERRIEALDIDPVDEIIYWVD 387
+DPV +YW D
Sbjct: 503 ---------VDPVHGFMYWTD 514
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCS--AAVERPRPLPRVCQCQNGGMCAESE 201
CSH+C + GY+C CP+ VA+ RC + P ++C GG + E
Sbjct: 304 CSHVCNDLKIGYECLCPDG----FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 359
Query: 202 TG 203
G
Sbjct: 360 EG 361
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 19/175 (10%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 586
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 646
Query: 121 SGVKAYHAQRYNTSAP---NPC-----SQSPCSHLCLVIPG------GYQCACPE 161
+ +H N + P N C S C +LCL P + CACP+
Sbjct: 647 EDMVLFH----NLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 697
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ + I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 438 IYWSDL-SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 495
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFG-RGVPV--LI 113
G R+T+ + I +D +YW D G+ K K G GV + L+
Sbjct: 496 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYSLV 553
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 554 TENIQWPNGI 563
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 398 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 457
Query: 358 K-GQVQAVIS-DERRIEALDIDPVDEIIYWVDS 388
VIS D + + L +D + IYW DS
Sbjct: 458 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS 490
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCS--AAVERPRPLPRVCQCQNGGMCAESE 201
CSH+C + GY+C CP+ VA+ RC + P ++C GG + E
Sbjct: 322 CSHVCNDLKIGYECLCPDG----FQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCE 377
Query: 202 TG 203
G
Sbjct: 378 EG 379
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 1 MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
++W + +P+IE++ MDG++RR L + P GL+ DA L WVD+ + E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA-FSSQLCWVDAGTHRAECL 194
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQD 103
R+ +L G LQ+P ++ + N+Y+ T S+ D
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMD 235
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + + P I A + G +++ + P G+++D + T++W DS+L+ IE +
Sbjct: 50 VYWTDI-SEPSIGRASLHGGEPTTIIRQDLGSPEGIALDH-LGRTIFWTDSQLDRIEVAK 107
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWL--ARDTGSLYKQDKFGRGVPVLISKDLV 118
DG R+ + I D N+YW RD + G +L +L
Sbjct: 108 MDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLG 167
Query: 119 NPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATP 165
P+G+ + S LC V G ++ C A P
Sbjct: 168 LPNGL---------------TFDAFSSQLCWVDAGTHRAECLNPAQP 199
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 1 MFWAETGASPRI--ESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIES 58
+ +A+TG R+ E M + ++ + + GL+ D +D +YW D +I
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDC-VDKVVYWTDISEPSIGR 62
Query: 59 VRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLV 118
G TI+ I+LD I+W + G VL LV
Sbjct: 63 ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122
Query: 119 NPSGV 123
NP G+
Sbjct: 123 NPRGI 127
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 326 IEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-SDERRIEALDIDPVDEIIY 384
I L D VD+++YW D + +I R+ + G+ +I D E + +D + I+
Sbjct: 38 IIGLAFDCVDKVVYWTDISEPSIGRASL---HGGEPTTIIRQDLGSPEGIALDHLGRTIF 94
Query: 385 WVDS 388
W DS
Sbjct: 95 WTDS 98
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 142 SPCSHL--CLVIPGGYQCACPENAT-PKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCA 198
+PC H C+ G ++C C + T P+ EI + V P CQN C
Sbjct: 13 NPCEHAGKCINTLGSFECQCLQGYTGPR----CEIDVNECVSNP--------CQNDATCL 60
Query: 199 ESETGDLTCNCRQDFAGTFCE 219
+ + G+ C C + G CE
Sbjct: 61 D-QIGEFQCICMPGYEGVHCE 80
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 142 SPCSHL--CLVIPGGYQCACPENAT-PKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCA 198
+PC H C+ G ++C C + T P+ EI + V P CQN C
Sbjct: 11 NPCEHAGKCINTLGSFECQCLQGYTGPR----CEIDVNECVSNP--------CQNDATCL 58
Query: 199 ESETGDLTCNCRQDFAGTFCE 219
+ + G+ C C + G CE
Sbjct: 59 D-QIGEFQCICMPGYEGVHCE 78
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 120 PSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCAC 159
P G + Y+ + + + CS++ C+ LC+ PGGY C C
Sbjct: 30 PEGYR-YNLKSKSCEDIDECSENMCAQLCVNYPGGYTCYC 68
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.5 bits (75), Expect = 0.24, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CSH+C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 39 CSHVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 84
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 85 LEGGYKCQCEEGF 97
>pdb|1G82|A Chain A, Structure Of Fibroblast Growth Factor 9
pdb|1G82|B Chain B, Structure Of Fibroblast Growth Factor 9
pdb|1G82|C Chain C, Structure Of Fibroblast Growth Factor 9
pdb|1G82|D Chain D, Structure Of Fibroblast Growth Factor 9
Length = 160
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 IESVRHDGRNRQTILSGSDKL-QHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLIS 114
++S + G N + L GS+KL Q + + FE N W + +LYK GR V ++
Sbjct: 62 VDSGLYLGMNEKGELYGSEKLTQECVFREQFEEN--WYNTYSSNLYKHVDTGRRYYVALN 119
Query: 115 KDLVNPSGVKAYHAQRYNTSAPNPC 139
KD G + Q++ P P
Sbjct: 120 KDGTPREGTRTKRHQKFTHFLPRPV 144
>pdb|1IHK|A Chain A, Crystal Structure Of Fibroblast Growth Factor 9 (Fgf9)
Length = 174
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 56 IESVRHDGRNRQTILSGSDKL-QHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLIS 114
++S + G N + L GS+KL Q + + FE N W + +LYK GR V ++
Sbjct: 76 VDSGLYLGMNEKGELYGSEKLTQECVFREQFEEN--WYNTYSSNLYKHVDTGRRYYVALN 133
Query: 115 KDLVNPSGVKAYHAQRYNTSAPNPC 139
KD G + Q++ P P
Sbjct: 134 KDGTPREGTRTKRHQKFTHFLPRPV 158
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CSH+C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 12 CSHVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 57
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 58 LEGGYKCQCEEGF 70
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CSH+C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 15 CSHVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 60
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 61 LEGGYKCQCEEGF 73
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 33.1 bits (74), Expect = 0.30, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CSH+C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 12 CSHVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 57
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 58 LEGGYKCQCEEGF 70
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 32.7 bits (73), Expect = 0.43, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 55 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 85
>pdb|3F1R|A Chain A, Crystal Structure Of Fgf20 Dimer
pdb|3F1R|B Chain B, Crystal Structure Of Fgf20 Dimer
Length = 211
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 33 PTGLSVDAAMDHTLYWVDSKLNT---------IESVRHDGRNRQTILSGSDKLQHP-ISL 82
P G DH+L+ + ++ ++S + G N + L GS+KL I
Sbjct: 81 PDGSVQGTRQDHSLFGILEFISVAVGLVSIRGVDSGLYLGMNDKGELYGSEKLTSECIFR 140
Query: 83 DVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPC 139
+ FE N W + ++YK GR V ++KD G ++ Q++ P P
Sbjct: 141 EQFEEN--WYNTYSSNIYKHGDTGRRYFVALNKDGTPRDGARSKRHQKFTHFLPRPV 195
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 111 VLISKDLVNPSGVKAYHAQRYNTSAPNPCSQ---SPCSHLCLVIPGGYQCACP 160
V+ D N + A Y + N C+ PCSH C GGY C+CP
Sbjct: 93 VIFKSDFSNEERFTGF-AAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCP 144
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 32.3 bits (72), Expect = 0.52, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 50 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 80
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 32.3 bits (72), Expect = 0.55, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 12 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 42
>pdb|1IOE|L Chain L, Human Coagulation Factor Xa In Complex With M55532
pdb|1IQE|L Chain L, Human Coagulation Factor Xa In Complex With M55590
pdb|1IQF|L Chain L, Human Coagulation Factor Xa In Complex With M55165
pdb|1IQG|L Chain L, Human Coagulation Factor Xa In Complex With M55159
pdb|1IQH|L Chain L, Human Coagulation Factor Xa In Complex With M55143
pdb|1IQI|L Chain L, Human Coagulation Factor Xa In Complex With M55125
pdb|1IQJ|L Chain L, Human Coagulation Factor Xa In Complex With M55124
pdb|1IQK|L Chain L, Human Coagulation Factor Xa In Complex With M55113
pdb|1IQL|L Chain L, Human Coagulation Factor Xa In Complex With M54476
pdb|1IQM|L Chain L, Human Coagulation Factor Xa In Complex With M54471
pdb|1IQN|L Chain L, Human Coagulation Factor Xa In Complex With M55192
pdb|1C5M|F Chain F, Structural Basis For Selectivity Of A Small Molecule, S1-
Binding, Sub-Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|4A7I|A Chain A, Factor Xa In Complex With A Potent 2-Amino-Ethane
Sulfonamide Inhibitor
Length = 96
Score = 32.3 bits (72), Expect = 0.56, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 12 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 42
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 32.3 bits (72), Expect = 0.57, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 11 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 41
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 32.0 bits (71), Expect = 0.63, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 10 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 40
>pdb|1XKA|L Chain L, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|A Chain A, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1XKB|B Chain B, Factor Xa Complexed With A Synthetic Inhibitor
Fx-2212a,(2s)-(3'-
Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid
pdb|1WU1|B Chain B, Factor Xa In Complex With The Inhibitor
4-[(5-Chloroindol-2-Yl)
Sulfonyl]-2-(2-Methylpropyl)-1-[[5-(Pyridin-4-Yl)
Pyrimidin-2- Yl]carbonyl]piperazine
Length = 95
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 11 CQNQGKC-KXGLGEYTCTCLEGFEGKNCELFT 41
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CS++C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 39 CSYVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 84
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 85 LEGGYKCQCEEGF 97
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 141 QSP--CSHLCLVIPGGYQCACPE 161
Q P CS LC+ + GGY+C C E
Sbjct: 73 QDPDTCSQLCVNLEGGYKCQCEE 95
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAE---S 200
CS++C + GY+C CP+ VA+ RC + +CQ+ C++ +
Sbjct: 15 CSYVCNDLKIGYECLCPDG----FQLVAQRRCE----------DIDECQDPDTCSQLCVN 60
Query: 201 ETGDLTCNCRQDF 213
G C C + F
Sbjct: 61 LEGGYKCQCEEGF 73
>pdb|2D03|H Chain H, Crystal Structure Of The G91s Mutant Of The Nna7 Fab
Length = 223
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
SL + IY+ AR+ G Y D +G+G V +S P V
Sbjct: 85 SLQADDTAIYYCARNRGYSYAMDSWGQGTSVTVSSAKTTPPSV 127
>pdb|1T2Q|H Chain H, The Crystal Structure Of An Nna7 Fab That Recognizes An
N-Type Blood Group Antigen
Length = 221
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 81 SLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
SL + IY+ AR+ G Y D +G+G V +S P V
Sbjct: 85 SLQADDTAIYYCARNRGYSYAMDSWGQGTSVTVSSAKTTPPSV 127
>pdb|2I9A|A Chain A, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|B Chain B, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|C Chain C, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9A|D Chain D, Crystal Structure Of The Free Aminoterminal Fragment Of
Urokinase Type Plasminogen Activator (Atf)
pdb|2I9B|A Chain A, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|B Chain B, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|C Chain C, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|D Chain D, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 145
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 185 LPRVCQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
+P C C NGG C ++ + CNC + F G CE
Sbjct: 9 VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 45
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C N G C + GD TC C + F G CE
Sbjct: 11 CLNQGHCKDG-IGDYTCTCAEGFEGKNCE 38
>pdb|3BT1|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|A Chain A, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 135
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 185 LPRVCQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
+P C C NGG C ++ + CNC + F G CE
Sbjct: 9 VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 45
>pdb|3U73|A Chain A, Crystal Structure Of Stabilized Human Upar Mutant In
Complex With Atf
Length = 132
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 185 LPRVCQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
+P C C NGG C ++ + CNC + F G CE
Sbjct: 7 VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 43
>pdb|1URK|A Chain A, Solution Structure Of The Amino Terminal Fragment Of
Urokinase-Type Plasminogen Activator
Length = 130
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 185 LPRVCQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
+P C C NGG C ++ + CNC + F G CE
Sbjct: 2 VPSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 38
>pdb|3H1S|A Chain A, Crystal Structure Of Superoxide Dismutase From
Francisella Tularensis Subsp. Tularensis Schu S4
pdb|3H1S|B Chain B, Crystal Structure Of Superoxide Dismutase From
Francisella Tularensis Subsp. Tularensis Schu S4
Length = 195
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 54 NTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYW 91
N +E HDGRN + I+ S+ + VF + YW
Sbjct: 44 NLVEGTEHDGRNLEEIVKTSNGGIFNNAAQVFNHTFYW 81
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C N G C + GD TC C + F G CE
Sbjct: 55 CLNQGHC-KXGIGDYTCTCAEGFEGKNCE 82
>pdb|1QNZ|H Chain H, Nmr Structure Of The 0.5b Anti-Hiv Antibody Complex With
The Gp120 V3 Peptide
Length = 119
Score = 29.3 bits (64), Expect = 4.5, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 16 WMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDK 75
WM +H +SL G HP Y D+ N + G+ + T+ S
Sbjct: 36 WMKQNHGKSLEWIGNFHP-------------YSDDTNYNE----KFKGKAKLTVEKSSST 78
Query: 76 LQHPIS-LDVFENNIYWLARDTGSLYKQDKFGRGVPVLIS 114
+ S L ++ +Y+ A GS Y D +G+G V +S
Sbjct: 79 VYLEFSRLTSDDSAVYYCAIHYGSAYAMDYWGQGTSVTVS 118
>pdb|2H00|A Chain A, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|B Chain B, Human Methyltransferase 10 Domain Containing Protein
pdb|2H00|C Chain C, Human Methyltransferase 10 Domain Containing Protein
Length = 254
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 8 ASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR----HDG 63
S R+ + D R+L T +R GLS+D ++ + V +LN I V H
Sbjct: 1 GSGRVSLNFKDPEAVRALTCTLLREDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQD 60
Query: 64 RNRQTILSGSD 74
++ T+ G D
Sbjct: 61 SDKSTLRRGID 71
>pdb|1FLR|H Chain H, 4-4-20 Fab Fragment
Length = 219
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 43 DHTLYWV----DSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARD--- 95
D+ + WV + L + +R+ N +T S S K + IS D ++++Y +
Sbjct: 31 DYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRV 90
Query: 96 --------TGSLYKQDKFGRGVPVLIS 114
TGS Y D +G+G V +S
Sbjct: 91 EDMGIYYCTGSYYGMDYWGQGTSVTVS 117
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 50 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 80
>pdb|1CCF|A Chain A, How An Epidermal Growth Factor (Egf)-Like Domain Binds
Calcium-High Resolution Nmr Structure Of The Calcium
Form Of The Nh2-Terminal Egf-Like Domain In Coagulation
Factor X
Length = 42
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C N G C GD TC C + F G CE
Sbjct: 11 CLNQGHCKXG-IGDYTCTCAEGFEGKNCE 38
>pdb|4FAB|H Chain H, Three-Dimensional Structure Of A Fluorescein-Fab Complex
Crystallized In 2-Methyl-2,4-Pentanediol
Length = 216
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 43 DHTLYWV----DSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARD--- 95
D+ + WV + L + +R+ N +T S S K + IS D ++++Y +
Sbjct: 31 DYWMNWVRQSPEKGLEWVAQIRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRV 90
Query: 96 --------TGSLYKQDKFGRGVPVLIS 114
TGS Y D +G+G V +S
Sbjct: 91 EDMGIYYCTGSYYGMDYWGQGTSVTVS 117
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 144 CSHLCLVIPGGYQCACPENATPKLPGVAEIRC 175
CSH+C + GY+C CP+ VA+ RC
Sbjct: 55 CSHVCNDLKIGYECLCPDG----FQLVAQRRC 82
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 10 CQNQGKCKDG-LGEYTCTCLEGFEGKNCELFT 40
>pdb|4BDW|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii In Complex With Holmium
pdb|4BDX|A Chain A, The Stucture Of The Fni-egf Tandem Domain Of Coagulation
Factor Xii
Length = 85
Score = 28.1 bits (61), Expect = 9.9, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 187 RVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
R C +GG C E E G C+C + G FC+
Sbjct: 49 RTNPCLHGGRCLEVE-GHRLCHCPVGYTGPFCD 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,847,276
Number of Sequences: 62578
Number of extensions: 536813
Number of successful extensions: 1418
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1184
Number of HSP's gapped (non-prelim): 179
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)