RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy951
(428 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 176 bits (447), Expect = 9e-49
Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D LYWVDSKL++I S+
Sbjct: 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 586
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 587 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 646
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
+ +H N C ++ C +LCL P + CACP+
Sbjct: 647 EDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 698
Score = 66.0 bits (160), Expect = 8e-12
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 438 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 495
Query: 57 ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKF---GRGVPV 111
G R+T+ + P I +D +YW D G+ K K G +
Sbjct: 496 SVADTKGVKRKTLF--RENGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYS 551
Query: 112 LISKDLVNPSG 122
L+++++ P+G
Sbjct: 552 LVTENIQWPNG 562
Score = 50.2 bits (119), Expect = 9e-07
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 299 VYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 358
++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 399 FFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 458
Query: 359 GQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ D + + L +D + IYW DS + +
Sbjct: 459 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 498
Score = 42.5 bits (99), Expect = 3e-04
Identities = 44/270 (16%), Positives = 81/270 (30%), Gaps = 46/270 (17%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
+ CSH+C + GY+C CP+ L +C++
Sbjct: 314 ECLDNNGGCSHVCNDLKIGYECLCPDG--------------------FQLVAQRRCEDID 353
Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
C + +T C + CE + ++ V + Y +
Sbjct: 354 ECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA-------------VGSIAYLFF 400
Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAY--ETHK 313
R + M S + NV ++ S H
Sbjct: 401 TNRHEVRKMTLDRSEYTSLIPNLRNVVA--LDTEVASNRIYWSDLSQRMICSTQLDRAHG 458
Query: 314 RRFRDVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDER 369
D + D + + L +D + IYW DS + + KG + + +
Sbjct: 459 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFRENGS 514
Query: 370 RIEALDIDPVDEIIYWVDSYDR-NIRRSFM 398
+ A+ +DPV +YW D I++ +
Sbjct: 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 544
Score = 40.2 bits (93), Expect = 0.001
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 20 SHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG--SDKLQ 77
+ ++ +R+ L + A + YW D I S + D + + S +Q
Sbjct: 413 RSEYTSLIPNLRNVVALDTEVASNRI-YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471
Query: 78 HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P +++D +NIYW G++ D G L ++ P +
Sbjct: 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 519
Score = 32.5 bits (73), Expect = 0.32
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIE-ALDID 377
V + + + +D + +YWVDS +I + G + ++ DE+R+ +
Sbjct: 553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV---NGGNRKTILEDEKRLAHPFSLA 609
Query: 378 PVDEIIYWVDSYDRNIRR 395
++ ++W D + I
Sbjct: 610 VFEDKVFWTDIINEAIFS 627
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 174 bits (441), Expect = 3e-48
Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D LYWVDSKL++I S+
Sbjct: 510 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 568
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 569 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 628
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
+ +H N C ++ C +LCL P + CACP+
Sbjct: 629 EDMVLFHQLT-QPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 680
Score = 64.8 bits (157), Expect = 2e-11
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 15/131 (11%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 420 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 477
Query: 57 ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLARDTGS---LYKQDKFGRGVPV 111
G R+T+ ++ P I +D +YW D G+ + K G +
Sbjct: 478 SVADTKGVKRKTLF--REQGSKPRAIVVDPVHGFMYWT--DWGTPAKIKKGGLNGVDIYS 533
Query: 112 LISKDLVNPSG 122
L+++++ P+G
Sbjct: 534 LVTENIQWPNG 544
Score = 49.8 bits (118), Expect = 1e-06
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 439
Query: 358 KGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ D + + L +D + IYW DS + +
Sbjct: 440 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 480
Score = 43.6 bits (102), Expect = 1e-04
Identities = 43/270 (15%), Positives = 79/270 (29%), Gaps = 46/270 (17%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
+ CSH+C + GY+C CP+ +L + P ++C GG
Sbjct: 296 ECLDNNGGCSHVCNDLKIGYECLCPDGF--QLVAQRRCEDIDECQDPDTCSQLCVNLEGG 353
Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
+ E G + Y +
Sbjct: 354 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR-------------------------HEV 388
Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAY---ETH 312
RK ++ ++L + A ++ S
Sbjct: 389 RKMTLDRSEYTSLIPNLRNVV--------ALDTEVASNRIYWSDLSQRMICSTQLDRAHG 440
Query: 313 KRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDE--R 369
+ VIS + + + L +D + IYW DS + + KG + + E
Sbjct: 441 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFREQGS 496
Query: 370 RIEALDIDPVDEIIYWVDSYDR-NIRRSFM 398
+ A+ +DPV +YW D I++ +
Sbjct: 497 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 526
Score = 41.3 bits (96), Expect = 5e-04
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 5/108 (4%)
Query: 20 SHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSG--SDKLQ 77
+ ++ +R+ L + A + YW D I S + D + + S +Q
Sbjct: 395 RSEYTSLIPNLRNVVALDTEVASNRI-YWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 453
Query: 78 HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P +++D +NIYW G++ D G L + P +
Sbjct: 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAI 501
Score = 33.6 bits (76), Expect = 0.12
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIE-ALDID 377
V + + + +D + +YWVDS +I + G + ++ DE+R+ +
Sbjct: 535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV---NGGNRKTILEDEKRLAHPFSLA 591
Query: 378 PVDEIIYWVDSYDRNIRR 395
++ ++W D + I
Sbjct: 592 VFEDKVFWTDIINEAIFS 609
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 166 bits (420), Expect = 2e-47
Identities = 51/173 (29%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D LYWVDSKL++I S+
Sbjct: 216 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGR-LYWVDSKLHSISSID 274
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 275 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 334
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP-----CSHLCLVIP------GGYQCACPEN 162
+ +H N C ++ C +LCL P + CACP+
Sbjct: 335 EDMVLFHNLTQPRG-VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 386
Score = 70.6 bits (172), Expect = 2e-13
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 7/128 (5%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 126 IYWSDLS-QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW-IHSNIYWTDSVLGTV 183
Query: 57 ESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISK 115
G R+T+ + I +D +YW + K G + L+++
Sbjct: 184 SVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE 243
Query: 116 DLVNPSGV 123
++ P+G+
Sbjct: 244 NIQWPNGI 251
Score = 64.1 bits (155), Expect = 2e-11
Identities = 49/274 (17%), Positives = 85/274 (31%), Gaps = 54/274 (19%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
N C + CSH+C + GY+C CP VA+ RC E CQ+
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCP----DGFQLVAQRRCEDIDE----------CQDP 46
Query: 195 GMCA---ESETGDLTCNCRQDFA----GTFCENYTGIGQGLTLGRSLLYIPTLLLLLALV 247
C+ + G C C + F C+ I R + TL
Sbjct: 47 DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL------- 99
Query: 248 SATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIR 307
S + T V +++ + + +
Sbjct: 100 ------------DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV 147
Query: 308 AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI-- 365
+ + D + + L +D + IYW DS + + KG + +
Sbjct: 148 SSYD-----TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT----KGVKRKTLFR 198
Query: 366 SDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFM 398
+ + A+ +DPV +YW D I++ +
Sbjct: 199 ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL 232
Score = 45.6 bits (107), Expect = 2e-05
Identities = 43/297 (14%), Positives = 80/297 (26%), Gaps = 50/297 (16%)
Query: 136 PNPCSQ-SPCSHLCLVIPGGYQCACPENAT-------PKLPGVAEIRCSAAVERPRPLPR 187
+ C CS LC+ + GGY+C C E K G R +
Sbjct: 40 IDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTL 99
Query: 188 VCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALV 247
+ L + + I + ++ +
Sbjct: 100 DRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159
Query: 248 SATVYYV-WRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEI 306
+ V W T S L T SV+ +G + T+ NG +
Sbjct: 160 APDGLAVDWIHSNIYWTD-SVLGTVSVADTKGVKRK--------------TLFRENGSKP 204
Query: 307 RAYETH-KRRF---------------------RDVI--SDERRIEALDIDPVDEIIYWVD 342
RA F + + + + +D + +YWVD
Sbjct: 205 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVD 264
Query: 343 SYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML 399
S +I + + + +L + ++ ++W D + I + L
Sbjct: 265 SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL 319
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 166 bits (420), Expect = 2e-47
Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 4/163 (2%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + G +PRIE++ MDGS RR + T + P GL++D A +YWVD+K + IE
Sbjct: 216 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYA-GRRMYWVDAKHHVIERAN 274
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG +R+ ++ S L HP ++ VFE+++YW T S+ +KF +I L P
Sbjct: 275 LDGSHRKAVI--SQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 332
Query: 121 SGVKAYHAQRYNTSA-PNPCSQSPCSHLCLVIPGGYQCACPEN 162
+ H QR + C+HLCL Y CACP
Sbjct: 333 MDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTG 375
Score = 80.2 bits (197), Expect = 1e-16
Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+FW++ RI A ++GS+ +V TG+ P GL+VD D LYW DS + IE
Sbjct: 130 VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVAN 187
Query: 61 HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
DG +R+ +L L+ P I+L E IYW +T + G G ++ L
Sbjct: 188 LDGAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 245
Query: 118 VNPSGV 123
P+G+
Sbjct: 246 FWPNGL 251
Score = 61.3 bits (148), Expect = 2e-10
Identities = 46/270 (17%), Positives = 75/270 (27%), Gaps = 49/270 (18%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
C+ + C+ C +I G QC C G E R V +C
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCH-------TG------YRLTEDGRTCQDVNECAEE 50
Query: 195 GMCA---ESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATV 251
G C+ + G C C + + RS +
Sbjct: 51 GYCSQGCTNSEGAFQCWCEAGY------------ELRPDRRSCKALGP------------ 86
Query: 252 YYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYET 311
V + A F++ L + +RA
Sbjct: 87 EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 146
Query: 312 HKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVI--SDER 369
V + L +D V + +YW DS I + + G + V+
Sbjct: 147 GSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL----DGAHRKVLLWQSLE 202
Query: 370 RIEALDIDPVDEIIYWVDSYDRN-IRRSFM 398
+ A+ + P++ IYW D + I S M
Sbjct: 203 KPRAIALHPMEGTIYWTDWGNTPRIEASSM 232
Score = 50.9 bits (121), Expect = 4e-07
Identities = 20/110 (18%), Positives = 44/110 (40%), Gaps = 5/110 (4%)
Query: 16 WMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDK 75
+ +L++ + + L + +W D L+ I +G N + ++S
Sbjct: 101 VLPHRSEYTLLLNNLENAIALDFHHRRELV-FWSDVTLDRILRANLNGSNVEEVVSTG-- 157
Query: 76 LQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
L+ P +++D + +YW T + + G VL+ + L P +
Sbjct: 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 153 bits (387), Expect = 3e-43
Identities = 51/173 (29%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D LYWVDSKL++I S+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLL-SGRLYWVDSKLHSISSID 192
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252
Query: 121 SGVKAYHAQRYNTSAPNPCSQ-----SPCSHLCLVIP------GGYQCACPEN 162
+ +H N C + C +LCL P + CACP+
Sbjct: 253 EDMVLFHNLTQ-PRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDG 304
Score = 77.0 bits (189), Expect = 7e-16
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS----LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTI 56
++W++ I S +D +H S ++ ++ P GL+VD + +YW DS L T+
Sbjct: 44 IYWSDLSQ-RMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTV 101
Query: 57 ESVRHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLI 113
G R+T+ + P I +D +YW + K G + L+
Sbjct: 102 SVADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159
Query: 114 SKDLVNPSGV 123
++++ P+G+
Sbjct: 160 TENIQWPNGI 169
Score = 69.7 bits (170), Expect = 2e-13
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 358 KGQVQAVISDE--RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ + + L +D + IYW DS + +
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104
Score = 63.9 bits (155), Expect = 2e-11
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 11 RIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTIL 70
+ +D S SL+ +R+ L + A + +YW D I S + D + +
Sbjct: 11 EVRKMTLDRSEYTSLI-PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSY 68
Query: 71 SG--SDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
S +Q P +++D +NIYW G++ D G L ++ P +
Sbjct: 69 DTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAI 125
Score = 41.6 bits (97), Expect = 3e-04
Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 338 IYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSF 397
+++ + ++ +R+ + + + ++I + R + ALD + IYW D R I +
Sbjct: 4 LFFTNRHE--VRK---MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ 58
Query: 398 M 398
+
Sbjct: 59 L 59
Score = 38.9 bits (90), Expect = 0.002
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAVISDERRIEALDID 377
+ + A+ +DPV +YW D I++ + V + + + +D
Sbjct: 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL--NGVDIYSLVTENIQWPNGITLD 172
Query: 378 PVDEIIYWVDSYDRNIRRS 396
+ +YWVDS +I
Sbjct: 173 LLSGRLYWVDSKLHSISSI 191
Score = 35.4 bits (81), Expect = 0.025
Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 300 YSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 358
+ +I + + V + + + +D + +YWVDS +I + +
Sbjct: 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 198
Query: 359 GQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
+ + ++R + ++ ++W D + I
Sbjct: 199 KTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 233
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 147 bits (372), Expect = 8e-41
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + G +PRIE++ MDGS RR + T + P GL++D A +YWVD+K + IE
Sbjct: 173 IYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRR-MYWVDAKHHVIERAN 231
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG +R+ ++S L HP ++ VFE+++YW T S+ +KF +I L P
Sbjct: 232 LDGSHRKAVISQG--LPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFP 289
Query: 121 SGVKAYHAQRYNTSAPNPCSQSP--CSHLCLVIPGGYQCACPEN 162
+ H QR N C + C+HLCL Y CACP
Sbjct: 290 MDIHTLHPQRQPAG-KNRCGDNNGGCTHLCLPSGQNYTCACPTG 332
Score = 78.0 bits (191), Expect = 4e-16
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+FW++ RI A ++GS+ +V TG+ P GL+VD + LYW DS + IE
Sbjct: 87 VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVD-WVHDKLYWTDSGTSRIEVAN 144
Query: 61 HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
DG +R+ +L S L+ P I+L E IYW +T + G G ++ L
Sbjct: 145 LDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHL 202
Query: 118 VNPSGVK 124
P+G+
Sbjct: 203 FWPNGLT 209
Score = 58.7 bits (141), Expect = 9e-10
Identities = 19/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%)
Query: 12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
I +L++ + + L + ++W D L+ I +G N + ++S
Sbjct: 55 IRQVLPHR-SEYTLLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEEVVS 112
Query: 72 GSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
+ +++D + +YW T + + G VL+ + L P +
Sbjct: 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 164
Score = 52.6 bits (125), Expect = 1e-07
Identities = 22/102 (21%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 295 GLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFML 354
++++N +IR H+ + ++++ ALD E+++W D I R+ +
Sbjct: 44 EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLN 103
Query: 355 EAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ +V V + L +D V + +YW DS I +
Sbjct: 104 GSNVEEV--VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVA 143
Score = 42.2 bits (98), Expect = 2e-04
Identities = 50/293 (17%), Positives = 86/293 (29%), Gaps = 55/293 (18%)
Query: 137 NPCSQ-SPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
N C++ CS C G +Q C C+ G
Sbjct: 2 NECAEEGYCSQGCTNSEGAFQ--------------------------------CWCEAGY 29
Query: 196 MCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPTLLLLLALVSATVYYVW 255
+C N I Q L TLLL + + +
Sbjct: 30 ELRPDRR---SCKALGPEPVLLFANRIDIRQVLPHRSE----YTLLLNNLENAIALDFHH 82
Query: 256 RKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI------VY---SNGPEI 306
R+ + + + G+NVE + + GL + +Y S I
Sbjct: 83 RRELVFWSDVTLDRILRANL-NGSNVEEV-VSTGLESPGGLAVDWVHDKLYWTDSGTSRI 140
Query: 307 RAYETHKRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQKGQVQAV 364
+ ++ + A+ + P++ IYW D + I S M G+
Sbjct: 141 EVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM--DGSGRRIIA 198
Query: 365 ISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGV 417
+ L ID +YWVD+ I R+ + + + V + H +
Sbjct: 199 DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAI 251
Score = 39.5 bits (91), Expect = 0.001
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)
Query: 300 YSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 358
+ N P I + R + L ID +YWVD+ I R+ +
Sbjct: 178 WGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL----D 233
Query: 359 GQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
G + + + I ++ +YW D + ++I
Sbjct: 234 GSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINS 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 146 bits (370), Expect = 8e-41
Identities = 63/165 (38%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 194
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ I D+ +P
Sbjct: 195 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 252
Query: 121 SGVKAYHAQRY-NTSAPNPCSQSPCSHLCLVIP--GGYQCACPEN 162
+ A+ QR N + P CSHLCL+ P YQCACP
Sbjct: 253 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTG 297
Score = 80.5 bits (198), Expect = 6e-17
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS-LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
++W++ I+ + + +V++G+ P GL+ D + LYW DS+ N IE
Sbjct: 49 IYWSDVS-EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVS 106
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWL-ARDTGSLYKQDKFGRGVPVLISKDLV 118
DG R+ + I+LD +YW + + + G ++I+ ++
Sbjct: 107 NLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY 166
Query: 119 NPSGV 123
P+G+
Sbjct: 167 WPNGL 171
Score = 69.3 bits (169), Expect = 3e-13
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 298 IVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
++Y+N ++R K V+ A+D +IYW D + I+R+ +
Sbjct: 7 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 66
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ Q V+S + L D + E +YW DS I S
Sbjct: 67 TESVQN-VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 106
Score = 68.2 bits (166), Expect = 8e-13
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
+G ++V+ G+ + + +YW D I+ + + S L
Sbjct: 22 NGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL 79
Query: 78 HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P ++ D +YW +T + + G VL ++L P +
Sbjct: 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 127
Score = 41.6 bits (97), Expect = 3e-04
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 345 DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG 404
R++R K V+ A+D +IYW D + I+R+ + +
Sbjct: 12 RRDLRL-VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 70
Query: 405 QV 406
Q
Sbjct: 71 QN 72
Score = 38.5 bits (89), Expect = 0.003
Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQKGQVQAVISDERRIEALDID 377
+ + A+ +DP +YW D + I R+ M + + S+ L +D
Sbjct: 117 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM--DGSSRFIIINSEIYWPNGLTLD 174
Query: 378 PVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNGV 417
++ +YW D+ I +S + + V G+ H +
Sbjct: 175 YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL 214
Score = 37.4 bits (86), Expect = 0.006
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 300 YSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQK 358
+ P+I RA RF + S+ L +D ++ +YW D+ I +S +
Sbjct: 141 WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL----D 196
Query: 359 GQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
G + + + ++I+YW D +I
Sbjct: 197 GTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILA 233
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 143 bits (361), Expect = 1e-37
Identities = 89/410 (21%), Positives = 144/410 (35%), Gaps = 56/410 (13%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W E G P+I+ A MDGS R +LV V GL++D A LYW D N IES
Sbjct: 137 MYWTEWGGKPKIDRAAMDGSERTTLV-PNVGRANGLTIDYA-KRRLYWTDLDTNLIESSN 194
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
G NR+ I L HP L +++ IYW S+ + +K +I L
Sbjct: 195 MLGLNREVIADD---LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYV 251
Query: 121 SGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIP-GGYQCACPENATPKLPGVAEIRCSAAV 179
+ +H+ R + S CSHLCL +P GG+ C CP +
Sbjct: 252 MDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAH----------------- 294
Query: 180 ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPT 239
R C + + + R + L R++ Y P
Sbjct: 295 YSLNADNRTCSAPTTFLLFSQK----SAINRMVIDEQQSPDIILPIHSLRNVRAIDYDP- 349
Query: 240 LLLLLALVSATVYY-------VWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGA 292
+ +Y+ + + + G + + + S + +
Sbjct: 350 -------LDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR- 401
Query: 293 SLGLTIVY---SNGPEIRAYETHKRRFRDVISDE-RRIEALDIDPVDEIIYWVDSYDRN- 347
+Y I R V+ E R A+ ++P +Y+ + +R+
Sbjct: 402 -----YIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP 456
Query: 348 -IRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
I R+ + + S + AL +D ++W DS R I S
Sbjct: 457 KIERAAL--DGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESS 504
Score = 133 bits (336), Expect = 3e-34
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 1 MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
M++ SP+IE A +DG+ R L +G+ P L++D+ L+W DS L IES
Sbjct: 446 MYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSR-LGKLFWADSDLRRIESS 504
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVN 119
G NR + + P+ L VFEN +YW+ + + K D GR + +
Sbjct: 505 DLSGANRIVLEDS--NILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQ 562
Query: 120 PSGVKAYHAQRYNTSAPNPCSQ--SPCSHLCLVIP-GGYQCACPEN 162
S + A +PC+Q CSH+CLV G +C+CP +
Sbjct: 563 LSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMH 608
Score = 85.6 bits (211), Expect = 4e-18
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + I A+M+GS +V G+ +P G++VD + LYW D+ N IE +
Sbjct: 51 IYWTDISL-KTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSK 108
Query: 61 HDGRNRQTILSGSDKLQHP--ISLDVFENNIYWLAR-DTGSLYKQDKFGRGVPVLISKDL 117
DG++RQ ++ L P ++LD E +YW + + G L+ ++
Sbjct: 109 LDGQHRQVLVWKD--LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-NV 165
Query: 118 VNPSGV 123
+G+
Sbjct: 166 GRANGL 171
Score = 72.5 bits (177), Expect = 7e-14
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 11 RIESAWMDGSHRRSLV-MTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTI 69
I ++ ++ + +TGV+ + L D D+ +YW D L TI +G + +
Sbjct: 16 DIRRISLETNNNNVAIPLTGVKEASALDFDVT-DNRIYWTDISLKTISRAFMNGSALEHV 74
Query: 70 LSGSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
+ L +P +++D N+YW T + G+ VL+ KDL +P +
Sbjct: 75 VEFG--LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRAL 128
Score = 64.8 bits (157), Expect = 2e-11
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 4/101 (3%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
+++S +IR I + + ALD D D IYW D + I R+FM
Sbjct: 9 LLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG 68
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ V V E + +D + + +YW D+ I S
Sbjct: 69 SALEHV--VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVS 107
Score = 42.1 bits (98), Expect = 3e-04
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 297 TIVYSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
T + P+I RA R S + AL +D ++W DS R I S +
Sbjct: 449 TNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLS- 507
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
G + V+ D ++ + + + +YW+D + I +
Sbjct: 508 ---GANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEK 544
Score = 40.9 bits (95), Expect = 7e-04
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 330 DIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSY 389
+ + + + D IRR LE V ++ + ALD D D IYW D
Sbjct: 1 ETGVPEAFLLFSRRAD--IRR-ISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDIS 57
Query: 390 DRNIRRSFM 398
+ I R+FM
Sbjct: 58 LKTISRAFM 66
Score = 38.2 bits (88), Expect = 0.005
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 339 YWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
+ + S I R + E Q + I R + A+D DP+D+ +YW+DS IR++
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Score = 35.9 bits (82), Expect = 0.025
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 328 ALDIDPVDEIIYWVDSYDRN-IRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWV 386
AL +DP + +YW + + I R+ M + ++ + R L ID +YW
Sbjct: 127 ALALDPAEGFMYWTEWGGKPKIDRAAM---DGSERTTLVPNVGRANGLTIDYAKRRLYWT 183
Query: 387 DSYDRNIRRS 396
D I S
Sbjct: 184 DLDTNLIESS 193
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 138 bits (347), Expect = 1e-35
Identities = 91/429 (21%), Positives = 147/429 (34%), Gaps = 54/429 (12%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G P+IE A MDGS R ++ + + P GL++D + LYW D+KLN I
Sbjct: 141 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYE-EQKLYWADAKLNFIHKSN 199
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
DG NRQ ++ GS L HP +L +FE+ +YW T S+ +K+ I D+ +P
Sbjct: 200 LDGTNRQAVVKGS--LPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIFSP 257
Query: 121 SGVKAYHAQRYNTSAPNPC-SQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV 179
+ A+ QR + CSHLCL+ P
Sbjct: 258 MDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFY---------------------- 295
Query: 180 ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRSLLYIPT 239
C C G + T + + I
Sbjct: 296 --------QCACPTGVKL----LENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVL 343
Query: 240 LLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNGASLGLTI- 298
L + A Y + T + + G+ +F G+ +
Sbjct: 344 QLEDIRHAIAIDYDPVEGYIY-WTDDEVRAIRRSFID-GSGSQF-VVTAQIAHPDGIAVD 400
Query: 299 -----VY---SNGPEIRAYETHKRRFRDVIS-DERRIEALDIDPVDEIIYWVDSYDRN-I 348
+Y + I + + +IS D A+ +DP+ +YW D + I
Sbjct: 401 WVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKI 460
Query: 349 RRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA 408
R+ + +V V + L +D + IYW D+ I + +
Sbjct: 461 ERAALDG--SDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE 518
Query: 409 GASRHQNGV 417
H G
Sbjct: 519 DKIPHIFGF 527
Score = 100 bits (250), Expect = 5e-23
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 43/203 (21%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDS-KLNTIESV 59
++W +TG RIE ++G+ R+ L+ + P + +D + + +YW D ++ IE
Sbjct: 406 LYWTDTGTD-RIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGY-MYWTDWGEIPKIERA 463
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVN 119
DG +R +++ S + ++LD E IYW T + + G G VL+ + +
Sbjct: 464 ALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPH 523
Query: 120 PSGV----------------------------------------KAYHAQRYNTSAPNPC 139
G KA + R S P
Sbjct: 524 IFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLKATNVHRVIGSNPCAE 583
Query: 140 SQSPCSHLCLVIPGGYQCACPEN 162
CSHLCL P G +CACP
Sbjct: 584 ENGGCSHLCLYRPQGLRCACPIG 606
Score = 82.6 bits (203), Expect = 5e-17
Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRS-LVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
++W++ I+ + + +V++G+ P GL+ D + LYW DS+ N IE
Sbjct: 54 IYWSDVS-EEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVS 111
Query: 60 RHDGRNRQTILSGSDKLQHP--ISLDVFENNIYWL-ARDTGSLYKQDKFGRGVPVLISKD 116
DG R+ + L P I+LD +YW + + + G ++I+ +
Sbjct: 112 NLDGSLRKVLFWQE--LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSE 169
Query: 117 LVNPSGV 123
+ P+G+
Sbjct: 170 IYWPNGL 176
Score = 68.3 bits (166), Expect = 2e-12
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 3/101 (2%)
Query: 298 IVYSNGPEIRAY--ETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
++Y+N ++R K V+ A+D +IYW D + I+R+ +
Sbjct: 12 LLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNK 71
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ Q V+S + L D + E +YW DS I S
Sbjct: 72 TESVQN-VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVS 111
Score = 65.2 bits (158), Expect = 1e-11
Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 4/108 (3%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
+G ++V+ G+ + + +YW D I+ + + S L
Sbjct: 27 NGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LL 84
Query: 78 HP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P ++ D +YW +T + + G VL ++L P +
Sbjct: 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAI 132
Score = 40.2 bits (93), Expect = 0.001
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 345 DRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG 404
R++R K V+ A+D +IYW D + I+R+ + +
Sbjct: 17 RRDLRL-VDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV 75
Query: 405 QV 406
Q
Sbjct: 76 QN 77
Score = 35.6 bits (81), Expect = 0.036
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 319 VISDERRIEALDIDPVDEIIYWVDSYDR-NIRRSFMLEAQKGQVQAVISDERRIEALDID 377
+ + A+ +DP +YW D + I R+ M + + S+ L +D
Sbjct: 122 FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGM--DGSSRFIIINSEIYWPNGLTLD 179
Query: 378 PVDEIIYWVDSYDRNIRR 395
++ +YW D+ I +
Sbjct: 180 YEEQKLYWADAKLNFIHK 197
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 128 bits (323), Expect = 2e-34
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 1 MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
++W + +P+IE++ MDG++RR L + P GL+ DA L WVD+ + E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECL 194
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLV 118
R+ +L G LQ+P ++ + N+Y+ T S+ D + +
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251
Query: 119 NPSGVKAYHAQ 129
G+ +Q
Sbjct: 252 RLYGITIALSQ 262
Score = 89.9 bits (223), Expect = 2e-20
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
++W + P I A + G +++ + P G+++D ++W DS+L+ IE +
Sbjct: 50 VYWTDIS-EPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAK 107
Query: 61 HDGRNRQTILSGSDKLQHP--ISLDVFENNIYW--LARDTGSLYKQDKFGRGVPVLISKD 116
DG R+ + L +P I D N+YW RD + G +L +
Sbjct: 108 MDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDN 165
Query: 117 LVNPSGV 123
L P+G+
Sbjct: 166 LGLPNGL 172
Score = 75.3 bits (185), Expect = 1e-15
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
+E M + ++ + + GL+ D D +YW D +I G TI+
Sbjct: 17 LERNTMKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIR 75
Query: 72 GSDKLQHP--ISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQ 129
L P I+LD I+W + G VL LVNP G+ +
Sbjct: 76 QD--LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR 133
Query: 130 RY 131
Sbjct: 134 GN 135
Score = 61.8 bits (150), Expect = 5e-11
Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 298 IVYSNGPEIR------AYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 351
++++ +I + + I L D VD+++YW D + +I R+
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 352 FMLEAQKGQVQAVISDE-RRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ G+ +I + E + +D + I+W DS I +
Sbjct: 64 SL---HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106
Score = 44.1 bits (104), Expect = 4e-05
Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 328 ALDIDPVDEIIYWVDSYDRN--IRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYW 385
+ DPV +YW D N I S M + + L D + W
Sbjct: 126 GIVTDPVRGNLYWTDWNRDNPKIETSHM--DGTNRRILAQDNLGLPNGLTFDAFSSQLCW 183
Query: 386 VDSYDRNIRRSFM 398
VD+
Sbjct: 184 VDAGTHRAECLNP 196
Score = 42.1 bits (99), Expect = 2e-04
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 297 TIVYSNGPEI-RAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 355
T + P+I ++ R + L D + WVD+
Sbjct: 139 TDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-- 196
Query: 356 AQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR 395
+ + V+ + A+ + +Y+ D ++
Sbjct: 197 -AQPGRRKVLEGLQYPFAVTSY--GKNLYYTDWKTNSVIA 233
Score = 41.0 bits (96), Expect = 4e-04
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 338 IYWVDSYD-RNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ + + + + + + I L D VD+++YW D + +I R+
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 397 FM 398
+
Sbjct: 64 SL 65
Score = 37.9 bits (88), Expect = 0.003
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 46 LYWVDSKLNTIESVRHDGRNRQTILSGS---DKLQHPISLDV--FENNIYWLARDTGSLY 100
L + + IE + + + + + + I L + +YW S+
Sbjct: 4 LLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIG 61
Query: 101 KQDKFGRGVPVLISKDLVNPSGV 123
+ G +I +DL +P G+
Sbjct: 62 RASLHGGEPTTIIRQDLGSPEGI 84
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 70.1 bits (171), Expect = 1e-13
Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 10/113 (8%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+++ + I ++ + L + H Y + V+
Sbjct: 198 VYYMDVNRDNAIVHVNINNPNPVVLTEANIEHYNVYG-----SLIFYQRGGDNPALCVVK 252
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLI 113
+DG + + G +++V +Y+ + Y +
Sbjct: 253 NDGTGFKELAKGE-----FCNINVTSQYVYFTDFVSNKEYCTSTQNPDTIKAL 300
Score = 43.9 bits (103), Expect = 5e-05
Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 12/123 (9%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLN-TIESV 59
F+ + ++ P L D +Y++D + I V
Sbjct: 158 YFYYNNPKNGQLYRYDTASQSEALFYDCNCYKPVVLD-----DTNVYYMDVNRDNAIVHV 212
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNI-YWLARDTGSLYKQDKFGRGVPVLISKDLV 118
+ N + + + +V+ + I Y D +L G G L +
Sbjct: 213 NINNPNPVVLTEANIE-----HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGEFC 267
Query: 119 NPS 121
N +
Sbjct: 268 NIN 270
Score = 41.6 bits (97), Expect = 3e-04
Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 14/125 (11%)
Query: 2 FWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWV---DSKLNTIES 58
+ + +G L P + + + +Y++ ++
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLD------PDPCIYASLIGNYIYYLHYDTQTATSLYR 133
Query: 59 VRHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLV 118
+R DG ++ I + + + + Y+ G LY+ D + + +
Sbjct: 134 IRIDGEEKKKIKNHYL-----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCY 188
Query: 119 NPSGV 123
P +
Sbjct: 189 KPVVL 193
Score = 32.8 bits (74), Expect = 0.18
Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 317 RDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDI 376
V+++ IE ++ I Y + + G ++ E +I
Sbjct: 219 PVVLTEAN-IEHYNVYG-SLIFYQRGGDNPALCVVKN----DGTGFKELAKG---EFCNI 269
Query: 377 DPVDEIIYWVDSYDRNIRR 395
+ + +Y+ D
Sbjct: 270 NVTSQYVYFTDFVSNKEYC 288
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 54.5 bits (132), Expect = 2e-09
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 20/88 (22%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ---C 191
N C +PC + CL G +QC C PG + C + C C
Sbjct: 46 NECVSNPCQNDATCLDQIGEFQCICM-------PGYEGVHCEVNTDE-------CASSPC 91
Query: 192 QNGGMCAESETGDLTCNCRQDFAGTFCE 219
+ G C + + C C F G C+
Sbjct: 92 LHNGRC-LDKINEFQCECPTGFTGHLCQ 118
Score = 50.7 bits (122), Expect = 5e-08
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 20/90 (22%)
Query: 137 NPCSQ--SPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVE--RPRPLPRVCQ 190
+ CS +PC H C+ G ++C C G RC V P
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQCL-------QGYTGPRCEIDVNECVSNP------ 52
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
CQN C + G+ C C + G CE
Sbjct: 53 CQNDATC-LDQIGEFQCICMPGYEGVHCEV 81
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 54.3 bits (131), Expect = 3e-09
Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 138 PCSQSPCSH--LCL--VIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ--- 190
C +PC + +CL + G + C CP G + CS+ VE
Sbjct: 2 ICDPNPCENGGICLPGLADGSFSCECP-------DGFTDPNCSSVVEVASDEEEPTSAGP 54
Query: 191 -----CQNGGMCAESETGDL------TCNCRQDFAGTFCE 219
C NGG C SE C C + F G C+
Sbjct: 55 CTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ 94
Score = 52.0 bits (125), Expect = 2e-08
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 27/99 (27%)
Query: 133 TSAPNPCSQSPCSH--LCLVIPG-------GYQCACPENATPKLPGVAEIRCSAAVERPR 183
++ PC+ +PC + C + GY C CP G I C +
Sbjct: 49 PTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCP-------RGFNGIHCQHNINE-- 99
Query: 184 PLPRVCQ---CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C+ C+NGG+C + +C C +F G C+
Sbjct: 100 -----CEVEPCKNGGIC-TDLVANYSCECPGEFMGRNCQ 132
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 51.1 bits (123), Expect = 3e-08
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 15/86 (17%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQN 193
+ C SPC + C G Y C C G C +
Sbjct: 43 DQCETSPCQNQGKCKDGLGEYTCTCL-------EGFEGKNCELFTRKLCSLDN----GDC 91
Query: 194 GGMCAESETGDLTCNCRQDFAGTFCE 219
C E + + C+C + +
Sbjct: 92 DQFCHEEQ-NSVVCSCARGYTLADNG 116
Score = 42.3 bits (100), Expect = 4e-05
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 15/83 (18%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
C + CS+ ++ P CQN G
Sbjct: 10 RECMEETCSYEE---AREVFEDSD-------KTNEFWNKYKDGDQCETSP----CQNQGK 55
Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
C + G+ TC C + F G CE
Sbjct: 56 C-KDGLGEYTCTCLEGFEGKNCE 77
Score = 38.8 bits (91), Expect = 6e-04
Identities = 10/61 (16%), Positives = 12/61 (19%), Gaps = 13/61 (21%)
Query: 139 CSQSPC--SHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
CS C C+C G A P P C +
Sbjct: 84 CSLDNGDCDQFCHEEQNSVVCSCA-------RGYTLADNGKACIPTGPYP----CGKQTL 132
Query: 197 C 197
Sbjct: 133 E 133
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 49.6 bits (119), Expect = 1e-07
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 16/88 (18%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
+ C+ SPC + C Y C C P C + +NG
Sbjct: 48 DQCASSPCQNGGSCKDQLQSYICFCL-------PAFEGRNCETHKDDQLICV----NENG 96
Query: 195 G---MCAESETGDLTCNCRQDFAGTFCE 219
G C++ +C C + ++
Sbjct: 97 GCEQYCSDHTGTKRSCRCHEGYSLLADG 124
Score = 28.8 bits (65), Expect = 1.6
Identities = 6/28 (21%), Positives = 6/28 (21%), Gaps = 1/28 (3%)
Query: 135 APNPCSQSPCSHLCLVIPG-GYQCACPE 161
C C G C C E
Sbjct: 89 LICVNENGGCEQYCSDHTGTKRSCRCHE 116
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 49.7 bits (119), Expect = 1e-07
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 16/86 (18%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV-ERPRPLPRVCQCQN 193
+ C +PC + LC Y+C C G C + +
Sbjct: 49 DQCEPNPCLNGGLCKDDINSYECWCQ-------VGFEGKNCELDATCNIKN------GRC 95
Query: 194 GGMCAESETGDLTCNCRQDFAGTFCE 219
C + C+C + +
Sbjct: 96 KQFCKTGADSKVLCSCTTGYRLAPDQ 121
Score = 36.6 bits (85), Expect = 0.004
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 15/82 (18%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCA 198
C + CS ++ A E + ++ P P C NGG+C
Sbjct: 18 CIEEKCS---------FEEAR-EVFENTEKTNEFWKQYVDGDQCEPNP----CLNGGLC- 62
Query: 199 ESETGDLTCNCRQDFAGTFCEN 220
+ + C C+ F G CE
Sbjct: 63 KDDINSYECWCQVGFEGKNCEL 84
Score = 34.2 bits (79), Expect = 0.028
Identities = 12/76 (15%), Positives = 16/76 (21%), Gaps = 24/76 (31%)
Query: 132 NTSAPNPCSQSPCSHLCLV-IPGGYQCACPENATPKLPGVA----EIRCSAAVERPRPLP 186
+ N C C C+C G + C AV P
Sbjct: 87 TCNIKNGR----CKQFCKTGADSKVLCSCT-------TGYRLAPDQKSCKPAVPFP---- 131
Query: 187 RVCQCQNGGMCAESET 202
C + T
Sbjct: 132 ----CGRVSVSHSPTT 143
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 50.1 bits (120), Expect = 2e-07
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 21/88 (23%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAV---ERPRPLPRVCQC 191
+ C P +C +QC C N G C + +P C
Sbjct: 97 DKCIPHPGCVHGICN---EPWQCLCETNWG----GQ---LCDKDLNYCGTHQP------C 140
Query: 192 QNGGMCAESETGDLTCNCRQDFAGTFCE 219
NGG C+ + C+C + ++G CE
Sbjct: 141 LNGGTCSNTGPDKYQCSCPEGYSGPNCE 168
Score = 40.4 bits (95), Expect = 3e-04
Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 17/83 (20%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
C C G C+ A+ R G
Sbjct: 32 KFCRPRDDFFGHYACDQNGNKTCM-------EGWMGPECNRAICRQGC------SPKHGS 78
Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
C C C+ + G +C+
Sbjct: 79 C----KLPGDCRCQYGWQGLYCD 97
Score = 38.9 bits (91), Expect = 0.001
Identities = 11/83 (13%), Positives = 15/83 (18%), Gaps = 22/83 (26%)
Query: 139 CSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
H G C C+ RPR
Sbjct: 2 RGSHHHHHHGSI---EGRSAVTCD-------DYYYGFGCNKFC-RPRD-----DFFGHYA 45
Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
C + C + + G C
Sbjct: 46 C----DQNGNKTCMEGWMGPECN 64
Score = 32.0 bits (73), Expect = 0.20
Identities = 5/31 (16%), Positives = 8/31 (25%), Gaps = 4/31 (12%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENY 221
+ G G C + G C +
Sbjct: 7 HHHHGSI----EGRSAVTCDDYYYGFGCNKF 33
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 51.2 bits (122), Expect = 3e-07
Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 15/95 (15%)
Query: 130 RYNTSAPNPCS-QSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPR- 187
+ + CS Q C +P Y C+C G ++C+ A P
Sbjct: 237 TFGRTCKERCSGQEGCKSYVFCLPDPYGCSCA-------TGWKGLQCNEACHPGFYGPDC 289
Query: 188 --VCQCQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
C C NG MC C C + G CE
Sbjct: 290 KLRCSCNNGEMC----DRFQGCLCSPGWQGLQCER 320
Score = 39.3 bits (91), Expect = 0.002
Identities = 20/95 (21%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 131 YNTSAPNPCSQSP-CSHLCLVIP--GGYQCACPENATPKLPGVAEIRCSAAVER---PRP 184
+ S P HL P G A + + P
Sbjct: 139 FIHSVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPEC 198
Query: 185 LPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C N G+C +TG C C F G CE
Sbjct: 199 NHLCTACMNNGVC-HEDTG--ECICPPGFMGRTCE 230
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.5 bits (117), Expect = 2e-06
Identities = 69/497 (13%), Positives = 130/497 (26%), Gaps = 170/497 (34%)
Query: 17 MDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVD-SKLNTIESV---------------- 59
+ GS + + + V MD ++W++ N+ E+V
Sbjct: 158 VLGSGKTWVALDVCLS---YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 60 ---RHDGRNRQTILSGSDKL-------QHPISLDVFENNIYWLARDTGSLYKQDKFGRGV 109
H + I S +L + L V N + + + F
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN--VQ---NAKAW---NAFNLSC 266
Query: 110 PVLI-SKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLV-IPGGYQCACPENATPKL 167
+L+ ++ + A +H+ L P+ L
Sbjct: 267 KILLTTRFKQVTDFLSAATT----------------THISLDHHSMTLT---PDEVKSLL 307
Query: 168 PGVAEIRCSAAVERPRPLPR-VCQC--QNGGMCAESETGDLTCNCRQDFAGTFCENYTGI 224
+ R LPR V + + AES +D T+ +N+ +
Sbjct: 308 LKYLDCRPQD-------LPREVLTTNPRRLSIIAES---------IRDGLATW-DNWKHV 350
Query: 225 G---QGLTLGRSL----------LY-----------IPTLLLLLALVSATVYYVWRKRPF 260
+ SL ++ IPT+LL L +W
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---------IWFDVIK 401
Query: 261 GKTMGSA--LSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRAYETHKR---R 315
M L S+ +Q P + + E Y H+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIP--------SIYLELKVKLENE-YALHRSIVDH 452
Query: 316 FRDVISDERRIEALDIDPVDEIIYWVDSY------------------------DRNIRRS 351
+ I + L +D+ Y + ++ IR
Sbjct: 453 YN--IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 352 FMLEAQKGQVQAVISD----ERRIEALDIDP-----VDEIIYWVDSYDRNIRRS------ 396
G + + + I D DP V+ I+ ++ + N+ S
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTDLL 568
Query: 397 -FMLEAQKGQVQAGASR 412
L A+ + A +
Sbjct: 569 RIALMAEDEAIFEEAHK 585
Score = 35.2 bits (80), Expect = 0.041
Identities = 25/159 (15%), Positives = 54/159 (33%), Gaps = 28/159 (17%)
Query: 252 YYVWRKRPFGKTMGSALSTQSVSFRQGTNVE-FGAPAFNNGAS-LGLTIVYSNGPEIR-A 308
Y V R +P+ + AL R NV G G + + L + S + +
Sbjct: 129 YNVSRLQPY-LKLRQALL----ELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMD 181
Query: 309 YETHKRRFRDVISDERRIEAL-----DIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQA 363
++ ++ S E +E L IDP W D + + + + +++
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRR 236
Query: 364 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 402
++ + L + + + + +F L +
Sbjct: 237 LLKSKPYENCLLV--LLNV--Q----NAKAWNAFNLSCK 267
Score = 30.2 bits (67), Expect = 1.5
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+ W + ++ H+ SLV + P ++ ++Y ++ K+
Sbjct: 394 LIWFDV--IKSDVMVVVNKLHKYSLV---EKQPKESTIS---IPSIY-LELKVKLENEYA 444
Query: 61 -HDG-RNRQTILSGSDKLQHPISLDVFENNIYW 91
H + I D + + Y
Sbjct: 445 LHRSIVDHYNIPKTFD--SDDLIPPYLDQYFYS 475
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 44.8 bits (106), Expect = 2e-06
Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 23/102 (22%)
Query: 122 GVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEI---RCSAA 178
V + + P C C + CS
Sbjct: 3 QVICRDEKTQMIYQQHQSWLRPVLRS----NRVEYCWCN----SGRAQCHSVPVKSCSE- 53
Query: 179 VERPRPLPRVCQCQNGGMCAESE-TGDLTCNCRQDFAGTFCE 219
+C NGG C ++ D C C + FAG CE
Sbjct: 54 ----------PRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE 85
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 44.8 bits (106), Expect = 3e-05
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 23/88 (26%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
+ C + C +C CP PG+ +C + + P+P C+NG
Sbjct: 212 KANCSTTCFNGGTCF---YPGKCICP-------PGLEGEQCEIS-KCPQP------CRNG 254
Query: 195 GMCAESETGDLTCNCRQDFAGTFCENYT 222
G C G C C + + G C
Sbjct: 255 GKC----IGKSKCKCSKGYQGDLCSKPV 278
Score = 43.7 bits (103), Expect = 6e-05
Identities = 22/89 (24%), Positives = 27/89 (30%), Gaps = 25/89 (28%)
Query: 139 CSQSPCSHLCLVIPGG-----YQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
C Q+ C C GG C CP G C A+ +C N
Sbjct: 146 CQQAECPGGCR--NGGFCNERRICECP-------DGFHGPHCEKAL-------CTPRCMN 189
Query: 194 GGMCAESETGDLTCNCRQDFAGTFCENYT 222
GG+C C C F G C+
Sbjct: 190 GGLCVTPGF----CICPPGFYGVNCDKAN 214
Score = 43.3 bits (102), Expect = 8e-05
Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 24/85 (28%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
+ C PC + C+ G +C C G CS V C
Sbjct: 245 SKCP-QPCRNGGKCI---GKSKCKCS-------KGYQGDLCSKPVCE-------PGCGAH 286
Query: 195 GMCAESETGDLTCNCRQDFAGTFCE 219
G C E C C++ + G C
Sbjct: 287 GTCHEPNK----CQCQEGWHGRHCN 307
Score = 31.4 bits (71), Expect = 0.51
Identities = 9/102 (8%), Positives = 24/102 (23%), Gaps = 16/102 (15%)
Query: 121 SGVKAYHAQRYNTSAPNPC-SQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAV 179
+G Y + + + + P ++ L+ G P + +
Sbjct: 63 AGQAEYFYEFLSLRSLDKGIMADPTVNVPLL---GTVPHKASVVQVGFPCLGKQDGV--- 116
Query: 180 ERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY 221
+ + SE + + C+
Sbjct: 117 ---------AAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQA 149
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 43.2 bits (102), Expect = 4e-05
Identities = 10/87 (11%), Positives = 16/87 (18%), Gaps = 16/87 (18%)
Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
+ + C C C+C G A P P C
Sbjct: 85 SLDNGD---CDQFCHEEQNSVVCSCA-------RGYTLADNGKACIPTGPYP----CGKQ 130
Query: 195 GMCAESETGDLTCNCRQDFA-GTFCEN 220
+ + A +
Sbjct: 131 TLE-RRKRSVAQATSSSGEAPDSITWK 156
Score = 40.5 bits (95), Expect = 4e-04
Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 15/83 (18%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
C + CS+ ++ P CQN G
Sbjct: 10 RECMEETCSYEEA---REVFEDSD-------KTNEFWNKYKDGDQCETSP----CQNQGK 55
Query: 197 CAESETGDLTCNCRQDFAGTFCE 219
C + G+ TC C + F G CE
Sbjct: 56 C-KDGLGEYTCTCLEGFEGKNCE 77
Score = 36.3 bits (84), Expect = 0.009
Identities = 8/63 (12%), Positives = 11/63 (17%), Gaps = 12/63 (19%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNG 194
P PC L Q P + + P +N
Sbjct: 120 IPTGPYPCGKQTLERRKRSVAQATSSSGEAP------DSITWKPYDAADLDP----TENP 169
Query: 195 GMC 197
Sbjct: 170 FDL 172
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 44.1 bits (103), Expect = 6e-05
Identities = 22/116 (18%), Positives = 28/116 (24%), Gaps = 31/116 (26%)
Query: 131 YNTSAPNPCSQSPCSHL---CLVIPGGYQCACPENATPK-----LPGVAEIRCSAAVERP 182
Y S + C+ C+ C C N T S P
Sbjct: 286 YAISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLP 345
Query: 183 RPLPRVCQC-------------------QNGGMCAESETGDLTCNCRQDFAGTFCE 219
P C QNGG C ++ C C + G CE
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTC----HNNVRCLCPAAYTGILCE 397
Score = 36.0 bits (82), Expect = 0.019
Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 34/101 (33%)
Query: 131 YNTSAPNPCSQSPC---SHLCLVIP----------GGYQCACPENATPKLPGVAEIRCSA 177
A N C S +++C +C CP I C
Sbjct: 346 IPKGAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCP-------AAYTGILC-- 396
Query: 178 AVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFC 218
E+ +C+ G C S++G
Sbjct: 397 --EK-------LRCEEAGSC-GSDSG--QGAPPHGTHHHHH 425
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 7e-05
Identities = 46/272 (16%), Positives = 79/272 (29%), Gaps = 103/272 (37%)
Query: 229 TLGRSLLYIPTLLLLLALVSATVYYVWR---KRPFGKTMGSAL--STQSVSFR------- 276
L LL L+ Y R KRPF K SAL + + +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 277 QGTNVEFGAPAFNNGASLGLTIVYSNGPEIRA-YETHKRRFRDVISD-ERRIEALDIDPV 334
QG ++ F E+R Y+T+ D+I + L +
Sbjct: 163 QGNTDDY----F---------------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 335 DE---------IIYWVD--------SYDRNIRRSF------------------------- 352
D I+ W++ Y +I S
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 353 --MLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRR----SFM--LEAQKG 404
L+ G Q +++ A+ I D W +S+ ++R+ F + +
Sbjct: 264 RSYLKGATGHSQGLVT------AVAIAETDS---W-ESFFVSVRKAITVLFFIGVRCYEA 313
Query: 405 --------QVQAGASRHQNGVPAS--SQRNLS 426
+ + + GVP+ S NL+
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLT 345
Score = 42.7 bits (100), Expect = 2e-04
Identities = 31/194 (15%), Positives = 68/194 (35%), Gaps = 65/194 (33%)
Query: 244 LALVSATVYYVWRKR---PFGKTM-G------SALSTQS-----------VSFRQGTNVE 282
L L+ + + + P T G +AL++ + V +R G ++
Sbjct: 1736 LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQ 1794
Query: 283 FGAPAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVD 342
P G S + A I+ R + + + ++
Sbjct: 1795 VAVPRDELGRS---------NYGMIA-----------INPGRVAASFSQEALQYVV---- 1830
Query: 343 SYDRNIRRS-FMLEA----QKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNI---- 393
+R +R+ +++E + Q Q V + + + ALD V ++ ++ + I
Sbjct: 1831 --ERVGKRTGWLVEIVNYNVENQ-QYVAAGD--LRALDT--VTNVLNFIKL--QKIDIIE 1881
Query: 394 -RRSFMLEAQKGQV 406
++S LE +G +
Sbjct: 1882 LQKSLSLEEVEGHL 1895
Score = 40.4 bits (94), Expect = 0.001
Identities = 83/492 (16%), Positives = 150/492 (30%), Gaps = 165/492 (33%)
Query: 17 MDGSHRRSLVMT-G-VRH----PTGLSVDAA-----MDHTL------YWVDSK------- 52
MD R L ++ G + H PT A+ + L + D +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 53 ----LNTIESVRHDGRNRQT--ILSGSDKLQHPISLDVFE------NNIYWLARDTGSLY 100
L + S+ + Q +L+ + L FE N+I+ LA L
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLN--------LCLTEFENCYLEGNDIHALA---AKLL 109
Query: 101 KQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAP-NPCSQSP--------CSHLCLVI 151
+++ ++ +K+L+ K Y R P + S S + L +
Sbjct: 110 QEND----TTLVKTKELI-----KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 152 PGGYQCACPENATPKLPG-----VAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLT 206
GG Q G E+R + L + +E L
Sbjct: 161 -GG-Q------------GNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 207 CNCRQDFAGTFCENYTGIGQGLTLGR------------SLLYIPTLLLLLALVSATVYYV 254
+ +T QGL + LL IP L+ ++ Y V
Sbjct: 205 AE----------KVFT---QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 255 WRKRPFGKTMG------SALSTQS------VSFRQGTNVEFGAPAFNNGASLGLTIVYSN 302
K G T G + S V+ + + E +F +T+++
Sbjct: 252 TAKL-LGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SFFVSVRKAITVLFFI 306
Query: 303 GPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNI-RRSFMLEAQKGQV 361
G +R YE + +L ++ DS + N S ML +
Sbjct: 307 G--VRCYEAYPNT------------SLPPSILE------DSLENNEGVPSPML-SISNLT 345
Query: 362 QAVISDERRIEALDID-PVDEIIY--WVDSYDRNI----RRS---FMLEAQKGQVQAGAS 411
Q + + + + P + + V+ + +S L +K + +G
Sbjct: 346 QEQV--QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Query: 412 RHQNGVPASSQR 423
Q+ +P S+R
Sbjct: 404 --QSRIPF-SER 412
Score = 38.5 bits (89), Expect = 0.004
Identities = 25/127 (19%), Positives = 46/127 (36%), Gaps = 33/127 (25%)
Query: 21 HRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRH--DGRNRQTILSGSDKLQH 78
H S ++ ++ D ++ + + + V DG + + LSGS +
Sbjct: 428 H--SHLLVPASD--LINKDLVKNN-VSFNAKDIQI--PVYDTFDGSDLRV-LSGS--ISE 477
Query: 79 PISLDVFENNIYWLA----RDT-------------GSLYKQDKFGRGVPVLISKDL-VNP 120
I + + W + T G L ++K G GV V+++ L +NP
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINP 537
Query: 121 S---GVK 124
G K
Sbjct: 538 DDDYGFK 544
Score = 28.5 bits (63), Expect = 5.8
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 32/108 (29%)
Query: 8 ASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNT----IESVRHDG 63
A PR E + M + P ++ + + Y V+ +E V ++
Sbjct: 1796 AVPRDELGRSNYG------MIAIN-PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 64 RNRQTILSGS---------------------DKLQHPISLDVFENNIY 90
N+Q + +G +LQ +SL+ E +++
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 39.2 bits (92), Expect = 2e-04
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCAC 159
+ CS++ C+ LC+ PGGY C C
Sbjct: 46 DECSENMCAQLCVNYPGGYTCYC 68
Score = 33.4 bits (77), Expect = 0.023
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 137 NPCSQSP---CSHLCLVIPGGYQCACPE 161
+ CS P + +C IPG ++C CPE
Sbjct: 4 DECSLKPSICGTAVCKNIPGDFECECPE 31
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 39.3 bits (92), Expect = 3e-04
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 137 NPCSQSPCSHLCLVI-PGGYQCACPE 161
+PC ++ C + C + Y C C E
Sbjct: 5 DPCFRANCEYQCQPLDQTSYLCVCAE 30
Score = 35.8 bits (83), Expect = 0.005
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 139 CSQ-SPCSHLCLVIPGGYQCACPE 161
C CS +C +PG ++C C
Sbjct: 83 CENGGFCSGVCHNLPGTFECICGP 106
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 39.3 bits (92), Expect = 3e-04
Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 137 NPCSQSPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
+PC+ C H C+ G + C C G C V +
Sbjct: 16 HPCASLCCGHGTCIDGIGSFSCDCR-------SGWEGRFCQREVSFLN--CSLDNGGCTH 66
Query: 196 MCAESETGDLTCNCRQDFAGTFCE 219
C E G C+C +
Sbjct: 67 YCLEEV-GWRRCSCAPGYKLGDDL 89
Score = 35.1 bits (81), Expect = 0.010
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 22/69 (31%)
Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVA----EIRCSAAVERPRPLPRVCQ 190
+ + C+H CL G +C+C PG ++C AV+ P
Sbjct: 58 SLDNG---GCTHYCLEEVGWRRCSCA-------PGYKLGDDLLQCHPAVKFP-------- 99
Query: 191 CQNGGMCAE 199
C E
Sbjct: 100 CGRPWKRME 108
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 37.0 bits (86), Expect = 4e-04
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 144 CSHLCLVIPGGYQCACPE 161
C C +C+C
Sbjct: 8 CDQFCREERSEVRCSCAH 25
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 37.7 bits (88), Expect = 8e-04
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
N C + CS++C + GY+C CP+
Sbjct: 30 NECLDNNGGCSYVCNDLKIGYECLCPD 56
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 137 NPCSQ-SPCSHLCLVIPGGYQCACPE 161
+ C CS LC+ + GGY+C C E
Sbjct: 70 DECQDPDTCSQLCVNLEGGYKCQCEE 95
Score = 28.8 bits (65), Expect = 1.1
Identities = 13/71 (18%), Positives = 17/71 (23%), Gaps = 19/71 (26%)
Query: 146 HLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG---MCAESET 202
H Y EN + E C NGG +C + +
Sbjct: 4 HHHHHPMSDYDIPTTENLYFQ-------GAMGTNE--------CLDNNGGCSYVCNDLK- 47
Query: 203 GDLTCNCRQDF 213
C C F
Sbjct: 48 IGYECLCPDGF 58
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 35.9 bits (84), Expect = 0.001
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C NGG C + + C C F G CE
Sbjct: 11 CLNGGSCKD-DINSYECWCPFGFEGKNCE 38
Score = 27.8 bits (63), Expect = 0.62
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPE 161
+ C +PC + C Y+C CP
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPF 30
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 38.0 bits (87), Expect = 0.003
Identities = 13/123 (10%), Positives = 20/123 (16%), Gaps = 11/123 (8%)
Query: 104 KFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCS-HLCLVIPGGYQCACPEN 162
+ + N + G
Sbjct: 61 QAAGQAEYFYEFLSLRSLDXGIMADPTVNVPLLGTVPHXASVVQVGFPCLGXQDGVAAFE 120
Query: 163 ATPKLPGVAEIRCSAAVER------PRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGT 216
+ + + C+NGG C C C F G
Sbjct: 121 VDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFC----NERRICECPDGFHGP 176
Query: 217 FCE 219
CE
Sbjct: 177 HCE 179
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 34.7 bits (80), Expect = 0.003
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 144 CSHLCLVIPGGYQCACPE 161
C C C+C
Sbjct: 11 CDQFCHEEQNSVVCSCAR 28
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 38.0 bits (89), Expect = 0.004
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
+ L TG+ P G++VD +Y D+ N + + + N+ + +
Sbjct: 137 GSKTQTVLPFTGLNDPDGVAVDN--SGNVYVTDTDNNRVVKLEAESNNQVVL--PFTDIT 192
Query: 78 HPISLDVF-ENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P + V +Y +T + K VL L P V
Sbjct: 193 APWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239
Score = 31.4 bits (72), Expect = 0.50
Identities = 32/122 (26%), Positives = 46/122 (37%), Gaps = 8/122 (6%)
Query: 4 AETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDG 63
G R+ + L G+ P GL+VD T+Y D + G
Sbjct: 40 TSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG--AGTVYVTDFNNRVV--TLAAG 95
Query: 64 RNRQTILSGSDKLQHPISLDVFENNIYWLARDTGS--LYKQDKFGRGVPVLISKDLVNPS 121
N QT+L D L +P L V ++A D G+ + K + VL L +P
Sbjct: 96 SNNQTVL-PFDGLNYPEGLAVDTQGAVYVA-DRGNNRVVKLAAGSKTQTVLPFTGLNDPD 153
Query: 122 GV 123
GV
Sbjct: 154 GV 155
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 36.6 bits (85), Expect = 0.004
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 22/104 (21%)
Query: 137 NPCSQSPC-SHLCLVIPGGYQCACP--------------ENATPKLPGVAEIRCSAAVER 181
+ C SPC + +C PG + C C V + RC +
Sbjct: 5 DECESSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE--INI 62
Query: 182 PRPLPRVCQCQNGGMCAES--ETGDLTCNCRQDFA---GTFCEN 220
+ C + G S + C + ++ GT CE+
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCED 106
Score = 30.4 bits (69), Expect = 0.60
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 137 NPCSQSP--CSH-LCLVIPGGYQCACPE 161
+ C P C + LC+ G ++C CP
Sbjct: 108 DECEVFPGVCKNGLCVNTRGSFKCQCPS 135
Score = 27.3 bits (61), Expect = 5.1
Identities = 4/31 (12%), Positives = 6/31 (19%)
Query: 131 YNTSAPNPCSQSPCSHLCLVIPGGYQCACPE 161
T CS + C +
Sbjct: 64 GATLKSQCCSSLGAAWGSPCTLCQVDPICGK 94
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich
domain EGF ATP-binding, kinase, nucleotide-binding,
receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}
Length = 58
Score = 34.5 bits (79), Expect = 0.004
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 191 CQNGGMC---AESETGDLTCNCRQDFAGTFCEN 220
C N C ++ +C C F G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 38.5 bits (89), Expect = 0.004
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 13/87 (14%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
+ CS L + G QC C + P + C C+ NG
Sbjct: 476 RKDNNSIICSGLGDCVCG--QCLCHTSDVPG-KLIYGQYCECDT-------INCERYNGQ 525
Query: 196 MCAESETGDL---TCNCRQDFAGTFCE 219
+C G C C F G+ C+
Sbjct: 526 VCGGPGRGLCFCGKCRCHPGFEGSACQ 552
Score = 35.8 bits (82), Expect = 0.024
Identities = 14/87 (16%), Positives = 18/87 (20%), Gaps = 17/87 (19%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGG 195
P SPC G CSAA L G
Sbjct: 592 ECPGCPSPCGKYI---SCAECLKFE-------KGPFGKNCSAACP---GLQLSNNPVKGR 638
Query: 196 MCAESETGDLTCNCRQDFAGTFCENYT 222
C E ++ C + +
Sbjct: 639 TCKERDS----EGCWVAYTLEQQDGMD 661
Score = 34.3 bits (78), Expect = 0.073
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 8/108 (7%)
Query: 120 PSGVKA-YHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAA 178
P +K Y + N + C + + +P +Q +
Sbjct: 353 PDTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFT 412
Query: 179 VERPRPLPRVCQCQNGGMCAESET----GDL---TCNCRQDFAGTFCE 219
+ C+C+ + G L C C + G CE
Sbjct: 413 DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE 460
Score = 33.1 bits (75), Expect = 0.18
Identities = 8/34 (23%), Positives = 11/34 (32%), Gaps = 5/34 (14%)
Query: 186 PRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
PR +C G C C C + C+
Sbjct: 563 PRRVECSGRGRC---RCN--VCECHSGYQLPLCQ 591
Score = 30.8 bits (69), Expect = 1.1
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 14/89 (15%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM-- 196
++ + + QC C + + C + +C+C G +
Sbjct: 405 VIRALGFTDIVTVQVLPQCECRCRDQSRDRSL----CH---GKGFLECGICRCDTGYIGK 457
Query: 197 -----CAESETGDLTCNCRQDFAGTFCEN 220
+ +L +CR+D C
Sbjct: 458 NCECQTQGRSSQELEGSCRKDNNSIICSG 486
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 34.4 bits (79), Expect = 0.005
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 132 NTSAPNPCSQSPCSHLCLVIPGGYQCACPE 161
+ + Q C HLC GGY C+C
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGGYFCSCRP 39
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 37.8 bits (88), Expect = 0.005
Identities = 22/96 (22%), Positives = 27/96 (28%), Gaps = 21/96 (21%)
Query: 130 RYNTSAPNPCSQSPCSH--LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPR 187
RY +PC PC H C GY C C PG C A
Sbjct: 1 RYKGG--SPCISQPCLHNGSCQDSIWGYTCTCS-------PGYEGSNCELAKNEC----- 46
Query: 188 VCQCQNGG---MCAESETGDLTCNCRQDFAGTFCEN 220
+ G C + TC+C Q +
Sbjct: 47 -HPERTDGCQHFCLPGQ-ESYTCSCAQGYRLGEDHK 80
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 38.1 bits (88), Expect = 0.005
Identities = 19/99 (19%), Positives = 25/99 (25%), Gaps = 21/99 (21%)
Query: 128 AQRYNTSAPNPCSQSPCSHLCLVIPGGY----QCACPENATPKLPGVAEIRCSAAVERPR 183
+ Y S + CS +C G QC C E
Sbjct: 475 EEDYRPSQQDECSPREGQPVCS--QRGECLCGQCVCH-------SSDFGKITGKYCECDD 525
Query: 184 ---PLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
+ C G C G C C D+ G +C
Sbjct: 526 FSCVRYKGEMCSGHGQC---SCG--DCLCDSDWTGYYCN 559
Score = 34.3 bits (78), Expect = 0.077
Identities = 17/95 (17%), Positives = 20/95 (21%), Gaps = 24/95 (25%)
Query: 136 PNPCSQSPCSHLCLVIPG---------GYQCACPENATPKLPGVAEIRCSAAVERPRPLP 186
P S + G G QC C E + + P
Sbjct: 441 AEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEED----------YRPSQQDECSPRE 490
Query: 187 RVCQCQNGGMCAESETGDLTCNCRQDFAGTFCENY 221
C G C G C C G Y
Sbjct: 491 GQPVCSQRGEC---LCG--QCVCHSSDFGKITGKY 520
Score = 32.0 bits (72), Expect = 0.42
Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCA 198
S C P L C A + P +C NG
Sbjct: 397 FSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAE-PNSHRCNNGNGT- 454
Query: 199 ESETGDLTCNCRQDFAGTFCE 219
E G C C + G+ CE
Sbjct: 455 -FECG--VCRCGPGWLGSQCE 472
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 35.8 bits (83), Expect = 0.010
Identities = 16/83 (19%), Positives = 22/83 (26%), Gaps = 16/83 (19%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
P C S C+ PG Y C CP + V + R C
Sbjct: 7 LDPTTC----ISGNCVNTPGSYICDCPPDFELNPTRVGCVDT-----------RSGNCYL 51
Query: 194 GGMCAESETGDLTCNCRQDFAGT 216
+ GD C+ +
Sbjct: 52 DIRP-RGDNGDTACSNEIGVGVS 73
Score = 31.6 bits (72), Expect = 0.24
Identities = 4/27 (14%), Positives = 5/27 (18%), Gaps = 2/27 (7%)
Query: 137 NPCSQSPC--SHLCLVIPGGYQCACPE 161
+PC C E
Sbjct: 82 GKAWGTPCEMCPAVNTSEYKILCPGGE 108
Score = 31.2 bits (71), Expect = 0.33
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 139 CSQSP---CSHLCLVIPGGYQCACPE 161
C + P C+ G +QC CP
Sbjct: 125 CQELPGLCQGGKCINTFGSFQCRCPT 150
Score = 27.7 bits (62), Expect = 4.9
Identities = 10/85 (11%), Positives = 19/85 (22%), Gaps = 22/85 (25%)
Query: 143 PCSHLCLVIPGGYQCACPENATPKLPG--VAEIRCSAAVERPRPLPRVCQCQNGGMCAE- 199
G C+ G V++ C ++ + MC
Sbjct: 50 YLDIRPRGDNGDTACSNE-------IGVGVSKASCCCSLGK-------AWGTPCEMCPAV 95
Query: 200 -SETGDLTCNCRQDFA----GTFCE 219
+ + C + F E
Sbjct: 96 NTSEYKILCPGGEGFRPNPITVILE 120
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 33.2 bits (76), Expect = 0.010
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 191 CQNGGMCAESETGD-LTCNCRQDFAGTFCEN 220
C NGG+C E+ D TCNC ++G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 35.8 bits (81), Expect = 0.012
Identities = 16/95 (16%), Positives = 23/95 (24%), Gaps = 16/95 (16%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
N C L C+C P E C+ E L + +
Sbjct: 98 NCGESGECIVEYLSEIQSAGCSCAIGXVPN--PEDEXXCTXTGETACQL---XCNTDNEV 152
Query: 197 CAESETGDLTCNCRQDFAGTF----------CENY 221
C E G C C + F ++
Sbjct: 153 CXNVE-GVYXCQCMEGFTFDXEXNVCLGPHHHHHH 186
Score = 29.2 bits (64), Expect = 2.0
Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 10/83 (12%)
Query: 138 PCSQSPCSH-LCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGM 196
+ C + + + + C C L ++E C E C G
Sbjct: 7 VTVDTICXNGQLVQMSNHFXCMCN----EGLVHLSENTCEEXNECXXE-TLGXACGEFGQ 61
Query: 197 CAESET----GDLTCNCRQDFAG 215
C E+ C C + +
Sbjct: 62 CIENPDPAQVNMYXCGCIEGYTL 84
Score = 27.3 bits (59), Expect = 8.5
Identities = 13/92 (14%), Positives = 16/92 (17%), Gaps = 14/92 (15%)
Query: 132 NTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQC 191
+ Y C C E T C C
Sbjct: 51 TLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQY-----------XNC 99
Query: 192 QNGGMCAE---SETGDLTCNCRQDFAGTFCEN 220
G C SE C+C +
Sbjct: 100 GESGECIVEYLSEIQSAGCSCAIGXVPNPEDE 131
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 32.8 bits (74), Expect = 0.017
Identities = 11/35 (31%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 191 CQNGGMC----AESETGDLTCNCRQDFAGTFCENY 221
C NGG C S C C+ F G C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTEN 48
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation,
EGF-like domain, endoplasmic reticulum, glycoprotein,
golgi apparatus; 1.50A {Drosophila melanogaster} PDB:
3c9a_C 3ltg_D
Length = 52
Score = 32.6 bits (74), Expect = 0.018
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 191 CQNGGMCAESETGDLT---CNCRQDFAGTFCEN 220
C N C + DL C C F G CE
Sbjct: 16 CLNDAHCFAVKIADLPVYSCECAIGFMGQRCEY 48
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 33.3 bits (77), Expect = 0.020
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPE 161
S NPC + C + GG++C C E
Sbjct: 48 SVGNPC----GNGTCKNVIGGFECTCEE 71
Score = 30.6 bits (70), Expect = 0.15
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPE 161
P+ C C+ G Y+C CP
Sbjct: 11 PDVC----KHGQCINTDGSYRCECPF 32
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 35.4 bits (82), Expect = 0.023
Identities = 15/107 (14%), Positives = 37/107 (34%), Gaps = 5/107 (4%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
DG + T L++ + D +++ ++ N I + G ++ L D
Sbjct: 44 DGKITEYPLPTPDAKVMCLTISS--DGEVWFTENAANKIGRITKKGIIKEYTLPNPD--S 99
Query: 78 HPISLDV-FENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
P + +I++ + + + G+ + PS +
Sbjct: 100 APYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFI 146
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 31.7 bits (72), Expect = 0.041
Identities = 5/19 (26%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 144 CSHLCLVIPGG-YQCACPE 161
C C C+C E
Sbjct: 9 CEQFCKNSADNKVVCSCTE 27
Score = 25.5 bits (56), Expect = 7.3
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 189 CQCQNGG---MCAESETGDLTCNCRQDF 213
C +NG C S + C+C + +
Sbjct: 2 CNIKNGRCEQFCKNSADNKVVCSCTEGY 29
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 31.3 bits (71), Expect = 0.046
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 191 CQNGGMCA-ESETGDLTCNCRQDFAGTFCEN 220
C + G+C CNC + G C+
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIGERCQY 44
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 31.2 bits (71), Expect = 0.050
Identities = 6/19 (31%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 144 CSHLCLVIPGG-YQCACPE 161
C C G C C E
Sbjct: 9 CEQYCSDHTGTKRSCRCHE 27
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 33.6 bits (77), Expect = 0.056
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 125 AYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACP 160
A + + + PCSH C GGY C+CP
Sbjct: 109 AAYYVATDINECTDFVDVPCSHFCNNFIGGYFCSCP 144
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 34.7 bits (79), Expect = 0.059
Identities = 18/133 (13%), Positives = 38/133 (28%), Gaps = 7/133 (5%)
Query: 268 LSTQSVSFRQGTNVEFGAPAFNNGASLGLTIVYSNGPEIRA---YETHKRRFRDV--ISD 322
+ VS + + + A + I R T + F+ + ++
Sbjct: 166 FEKEYVSTVYSGLSKVRTICWTHEAD-SMIITNDQNNNDRPNNYILTRESGFKVITELTK 224
Query: 323 ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEI 382
+ + P++ +Y+ + R + Q+ I D + P
Sbjct: 225 GQNCNGAETHPINGELYFNSWNAGQVFR-YDFTTQETTPLFTIQDSGWEFHIQFHPSGNY 283
Query: 383 IYWVDSYDRNIRR 395
Y V I R
Sbjct: 284 AYIVVVNQHYILR 296
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 31.7 bits (72), Expect = 0.061
Identities = 6/19 (31%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 144 CSHLCLVIPGG-YQCACPE 161
C C G C C E
Sbjct: 15 CEQYCSDHTGTKRSCRCHE 33
Score = 25.5 bits (56), Expect = 9.1
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 189 CQCQNGG---MCAESETGDLTCNCRQDF 213
C +NGG C++ +C C + +
Sbjct: 8 CVNENGGCEQYCSDHTGTKRSCRCHEGY 35
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 33.8 bits (77), Expect = 0.092
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 116 DLVNPSGVKAYHAQRYNTSAPNPCSQSPCSH--LCLVIPGGYQCACPENA 163
DL++ + +R C + CS+ +CL G+ C C +
Sbjct: 165 DLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 214
Score = 32.3 bits (73), Expect = 0.26
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 160 PENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCAESETGDLTCNCRQ-DFAGTFC 218
+ G E C + C N G+C + G +C+C F+G C
Sbjct: 166 LISDALFCNGQIERGCEGPSTTCQEDS----CSNQGVCLQQWDGF-SCDCSMTSFSGPLC 220
Query: 219 ENYT 222
+
Sbjct: 221 NDPG 224
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 33.6 bits (76), Expect = 0.10
Identities = 19/106 (17%), Positives = 23/106 (21%), Gaps = 17/106 (16%)
Query: 131 YNTSAPNPCSQSPC----SHLCLVIPGGYQCACPENATPK-----LPGVAEIRCSAAVER 181
Y S + C S C C N LP + A
Sbjct: 244 YAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAE 303
Query: 182 PRPLPRVCQC-QNGGMCAESETGDLT-------CNCRQDFAGTFCE 219
C C C + NCR + G CE
Sbjct: 304 SASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCE 349
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 33.9 bits (77), Expect = 0.11
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATPK-----LPGVAEIRCSAAVERPRPL-PR 187
S +I G QC C + + G ++
Sbjct: 388 SENGGICDGYTDFSVGLIAG--QCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNP 445
Query: 188 VCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
+ G C +SETG C C++ G C+
Sbjct: 446 LGTIPGGNPC-DSETGY--CYCKRLVTGQRCD 474
Score = 32.7 bits (74), Expect = 0.24
Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 24/105 (22%)
Query: 130 RYNTSAPNPCSQSPCSHLCLVIPGGY------QCACPENATPK-----LPGVAEIRCSAA 178
+ P C C+ L + G C C T + LP +
Sbjct: 429 DLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLD 488
Query: 179 VERPRPLPRVCQCQNGG----MCAESETGDLTCNCRQDFAGTFCE 219
RP C C GG C ++G C+C G C
Sbjct: 489 GCRP------CDCDLGGALNNSC-SEDSG--QCSCLPHMIGRQCN 524
Score = 31.2 bits (70), Expect = 0.71
Identities = 14/96 (14%), Positives = 26/96 (27%), Gaps = 15/96 (15%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPK-----LPGVAEIRCSAAVERPRPLPRVCQCQN 193
C+ + + C C N + ++ A R + C C
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE 322
Query: 194 GGMC----------AESETGDLTCNCRQDFAGTFCE 219
+ +G + NC+ + G CE
Sbjct: 323 HSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCE 358
Score = 29.7 bits (66), Expect = 2.2
Identities = 13/106 (12%), Positives = 19/106 (17%), Gaps = 21/106 (19%)
Query: 130 RYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVC 189
++NT N P C G C
Sbjct: 349 QHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCD-PAGSENGGI-------------C 394
Query: 190 QCQNGGMCAESETGDLTCNCRQDFAGTFCE----NYTGIGQGLTLG 231
G C C+ G C+ + + G
Sbjct: 395 DGYTDFSV-GLIAG--QCRCKLHVEGERCDVCKEGFYDLSAEDPYG 437
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody,
FAB, ternary complex, immune SY hydrolase; HET: PGE NAG
FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1
g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A*
1kdu_A
Length = 122
Score = 32.1 bits (72), Expect = 0.11
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 189 CQCQNGGMC--AESETGDLTCNCRQDFAGTFCENYTGIGQGLTLGRS 233
C C NGG C + + CNC + F G CE G
Sbjct: 1 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDKSKTCYEGNGHF 47
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 34.0 bits (77), Expect = 0.11
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 9/85 (10%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQNGGMCA 198
+ L +P ++ P G A E C NGG+C+
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGG---SPCEAGEEGEGGV----CLNGGVCS 205
Query: 199 ESETGDLTCNCRQ-DFAGTFCENYT 222
+ C+C + F G C
Sbjct: 206 VVDDQ-AVCDCSRTGFRGKDCSQGK 229
Score = 32.5 bits (73), Expect = 0.29
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 116 DLVNPSGVKAYHAQRYNTSAPNPCSQSPCSH--LCLVIPGGYQCACPENA 163
DL++ + +R C + CS+ +CL G+ C C +
Sbjct: 997 DLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTS 1046
Score = 29.0 bits (64), Expect = 3.5
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 191 CQNGGMCAESETGDLTCNCRQ-DFAGTFCENYTG 223
C N G+C + G +C+C F+G C +
Sbjct: 1025 CSNQGVCLQQWDG-FSCDCSMTSFSGPLCNDPGT 1057
Score = 29.0 bits (64), Expect = 4.1
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 136 PNPCSQSPCSH--LCLVIPGGYQCACP 160
PC +PC + +C Y C C
Sbjct: 619 AKPCLSNPCKNNGMCRDGWNRYVCDCS 645
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 33.4 bits (77), Expect = 0.12
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 3/106 (2%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
G + V T L V + +++ ++ N I + G + L D
Sbjct: 49 SGRIKEFEVPTPDAKVMCLIVSS--LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGP 106
Query: 78 HPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGV 123
+ I+ + +I++ + + K G + P+ +
Sbjct: 107 YGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFI 151
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 32.4 bits (74), Expect = 0.12
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 9/46 (19%)
Query: 183 RPLPRVCQ--------CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
+ +C C G C E+ + TC C F+G CE
Sbjct: 111 KKKLALCYTAACTNTSCSGHGECVET-INNYTCKCDPGFSGLKCEQ 155
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 31.6 bits (71), Expect = 0.13
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 25/100 (25%)
Query: 132 NTSAPNPCSQSPCSH--LCL-VIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRV 188
N S+ + C + C + G + C +C P
Sbjct: 6 NMSSAHKCIDTNVPENAACYRYLDGTEEWRCLLGFKEV-----GGKCV-------PASIT 53
Query: 189 CQCQNGG-----MCAESETGDLTCNCRQDFA-----GTFC 218
C+ NGG C + ++ C C ++ + G FC
Sbjct: 54 CEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFC 93
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 30.7 bits (70), Expect = 0.15
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 139 CSQSPC---SHLCLVIPGGYQCACPE 161
C + P +C G Y+C CP
Sbjct: 49 CQRDPLLCRGGVCHNTEGSYRCECPP 74
Score = 28.4 bits (64), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 133 TSAPNPCSQSPCSHLCLVIPGGYQCACPE 161
+P+ C + C+ PG ++C C E
Sbjct: 7 RISPDLCGR----GQCVNTPGDFECKCDE 31
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 32.7 bits (74), Expect = 0.16
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 136 PNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCS-AAVERPRPLPRVCQCQNG 194
+ CS L + G QC C + P + C + R +VC
Sbjct: 137 RKDNNSIICSGLGDCVCG--QCLCHTSDVPG-KLIYGQYCECDTINCERYNGQVCGGPGR 193
Query: 195 GMCAESETGDLTCNCRQDFAGTFCENY 221
G+C G C C F G+ C+++
Sbjct: 194 GLC---FCG--KCRCHPGFEGSACQHH 215
Score = 27.3 bits (60), Expect = 8.7
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 189 CQCQNGGMCAE--SETGDL---TCNCRQDFAGTFCE 219
C+C++ G L C C + G CE
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCE 121
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 30.4 bits (68), Expect = 0.24
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 23/80 (28%)
Query: 159 CPENAT--PKLPGVAEIRCSAA--------VERPRPLPRVCQCQNGG-----MCAESETG 203
PENA L G E RC V P C+ +NGG C ++
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPAPNM---TCKDKNGGCAPEAECKMNDKN 68
Query: 204 DLTCNCRQDFA-----GTFC 218
++ C C ++ + G FC
Sbjct: 69 EIVCKCTKEGSEPLFEGVFC 88
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 31.7 bits (72), Expect = 0.44
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
Query: 170 VAEIRCSAAVERPRPLPRV-CQCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIGQGL 228
+++ R + V P P + C C + G C + C C D Y G+
Sbjct: 49 ISQYRLTQGVIPPDPNFQSGCNCSSLGGCDLNNPS--RCECLDDLDEPTHFAYDAQGRVR 106
Query: 229 TLGRSLLY 236
+++Y
Sbjct: 107 ADTGAVIY 114
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 30.1 bits (68), Expect = 0.82
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 9/48 (18%)
Query: 183 RPLPRVCQ--------CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
+ +C C G C E+ + TC+C F G CE
Sbjct: 111 KKKHALCYTASCQDMSCSKQGECLETIG-NYTCSCYPGFYGPECEYVR 157
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo
sapiens} SCOP: g.3.11.1 PDB: 1k37_A
Length = 46
Score = 27.9 bits (62), Expect = 0.82
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
C +G + C C + G CE++
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45
>3akj_A CTKA; protein kinase, transferase; 2.00A {Helicobacter pylori} PDB:
3akk_A* 3akl_A*
Length = 325
Score = 30.6 bits (68), Expect = 0.85
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 19/117 (16%)
Query: 285 APAFNNGASLGLTIVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSY 344
AP F+ G+ L + + V+S+ + A + I+ +
Sbjct: 175 APIFDCGSCLY-------------PQADDVVCQKVLSNIDELNARIYNFPQSILKDDN-- 219
Query: 345 DRNIRR-SFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLE 400
D+ I F+ + + R +D++ + II I + F+
Sbjct: 220 DKKINYYDFLTQTNNKDCLDAL--LRIYPRIDMNKIHSIIDNTPFMS-EIHKEFLHT 273
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 29.8 bits (67), Expect = 0.90
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 189 CQCQNGGMCA-ESETGDLTC-NCRQDFAGTFCE 219
C C G CA +T ++ C +C AG CE
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE 33
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat,
beta-propeller, translation; 1.95A {Drosophila
melanogaster} SCOP: b.68.9.1
Length = 286
Score = 30.6 bits (70), Expect = 0.92
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 18 DGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQ 77
G R T ++HP G++VD + V+ K+ + +G S L+
Sbjct: 108 YGQFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQNGNVLHKF-GCSKHLE 164
Query: 78 HPISLDVF-ENNIY 90
P + V + I+
Sbjct: 165 FPNGVVVNDKQEIF 178
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 29.1 bits (65), Expect = 2.0
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 125 AYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACP 160
Y A+ + P C H C GG+ C+C
Sbjct: 118 FYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCR 153
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 28.8 bits (64), Expect = 2.1
Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 11/95 (11%)
Query: 137 NPCSQSPCSHLCLVIPGGYQCACPENAT---PKLPGVAEIRCSAAVERP-RPLPRVCQCQ 192
C PC CP N G+ C + + C
Sbjct: 76 AGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGFCGLGSEFCGGGCQSGACSTDKPCGKD 135
Query: 193 NGGMCAE-----SETGDLTCNCRQDFAGTFCENYT 222
GG S+ G +C + G C++
Sbjct: 136 AGGRVCTNNYCCSKWG--SCGIGPGYCGAGCQSGG 168
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease,
hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga
hutchinsonii}
Length = 293
Score = 29.4 bits (66), Expect = 2.1
Identities = 9/64 (14%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 343 SYDRNIRRSFMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 402
F + A + + Q ++ E+L + P EI + + R + +
Sbjct: 23 QVMSPTTFIFNVHALRTESQHILD-----ESLIVTPPIEIEEFSYNSG-TSRFVRLKATE 76
Query: 403 KGQV 406
Sbjct: 77 NTTF 80
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 28.6 bits (64), Expect = 2.4
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 183 RPLPRVCQ--------CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
+ +C C G C E + TCNC + G C+
Sbjct: 111 KLKAALCYTASCQPWSCSGHGECVEIIN-NYTCNCDVGYYGPQCQF 155
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 27.4 bits (60), Expect = 2.5
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 191 CQNGGMCA-ESETGDLTCNCRQDFAGTFCENYT 222
C +G C E +C C + G C +
Sbjct: 48 CIHG-ECKYVKELRAPSCICHPGYHGERCHGLS 79
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 29.6 bits (66), Expect = 2.5
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 133 TSAPNPCSQSPCSHLCLVIPGGYQC-ACPENATPKLPGVAEIRCSAAVERPRPLPRVCQC 191
P+ C + C+ G+ C CP P + + ++ C+
Sbjct: 48 ALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKD 107
Query: 192 QNGGMCAESET---------GDLTCNCRQDFAG 215
+ C + C C+ +AG
Sbjct: 108 KTHN-CHKHAECIYLGHFSDPMYKCECQTGYAG 139
Score = 28.1 bits (62), Expect = 6.7
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 136 PNPCSQSPCSHL--CL-VIPGGYQC-ACPE 161
P+ C +PC C G + C CP
Sbjct: 3 PDGCLSNPCFPGAQCSSFPDGSWSCGFCPV 32
>3nqh_A Glycosyl hydrolase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.11A {Bacteroides thetaiotaomicron}
Length = 441
Score = 28.9 bits (64), Expect = 3.5
Identities = 8/42 (19%), Positives = 10/42 (23%), Gaps = 3/42 (7%)
Query: 78 HPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVN 119
H + Y + G S DLVN
Sbjct: 25 HGACIVEENGRYYLFGEYKSD---KSNAFPGFSCYSSDDLVN 63
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 27.9 bits (61), Expect = 3.8
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
C G C ++ C C D + +
Sbjct: 10 DCGPGKKCRMNKKNKPRCVCAPDCSNITWKG 40
>2exh_A Beta-D-xylosidase; glykosidase, hydrolsase, family43, hydrolase;
HET: MES; 1.88A {Geobacillus stearothermophilus} SCOP:
b.29.1.23 b.67.2.1 PDB: 2exi_A* 2exj_A* 2exk_A*
Length = 535
Score = 28.7 bits (64), Expect = 4.2
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 108 GVPVLISKDLVN 119
GV + SKDL N
Sbjct: 37 GVRIYHSKDLKN 48
>1yif_A Beta-1,4-xylosidase; glycosidase, xylan, structural genomics, PSI,
protein structure initiative; 1.80A {Bacillus subtilis}
SCOP: b.29.1.23 b.67.2.1
Length = 533
Score = 28.7 bits (64), Expect = 4.4
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 108 GVPVLISKDLVN 119
GV + SKDLVN
Sbjct: 36 GVQIHHSKDLVN 47
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility,
protein-protein interaction, alternative splicing,
ATP-binding, copper transport cytoplasm; NMR {Homo
sapiens}
Length = 202
Score = 28.1 bits (62), Expect = 4.6
Identities = 18/78 (23%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 108 GVPVLISKDLVNPSGVKAYHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCA-CP---ENA 163
V + + S P Q CS + I G CA C E
Sbjct: 85 NFKVSLPDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAI-AGMTCASCVHSIEGM 143
Query: 164 TPKLPGVAEIRCSAAVER 181
+L GV +I S A
Sbjct: 144 ISQLEGVQQISVSLAEGT 161
>3iyp_F Complement decay-accelerating factor; virus, receptor, complex,
echovirus, DAF, icosahedral virus; HET: DAO; 7.20A {Homo
sapiens}
Length = 381
Score = 28.5 bits (63), Expect = 4.6
Identities = 8/62 (12%), Positives = 11/62 (17%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
S C + + + V E C R L C
Sbjct: 88 SDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQ 147
Query: 194 GG 195
Sbjct: 148 NL 149
>3c2u_A Xylosidase/arabinosidase; tetramer, glycoside hydrolase, GH43,
alpha-L- arabinofuranosidase; HET: B3P; 1.30A
{Selenomonas ruminantium} PDB: 1y7b_A* 1yi7_A*
Length = 538
Score = 28.7 bits (64), Expect = 4.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 108 GVPVLISKDLVN 119
GV + SKDLV+
Sbjct: 36 GVQIHHSKDLVH 47
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 28.5 bits (63), Expect = 5.0
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 191 CQNGGMCAESETGDLTCNC-RQDFAGTFCE 219
CQN G C + C+C R F G C
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target
T1997, PSI, structure initiative; 2.00A {Bacillus
halodurans} SCOP: b.29.1.23 b.67.2.1
Length = 528
Score = 28.3 bits (63), Expect = 5.1
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 108 GVPVLISKDLVN 119
GV + S+DL +
Sbjct: 38 GVRIHHSRDLKH 49
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 25.5 bits (56), Expect = 5.1
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
C G +C C + + G CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCERVD 47
>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB
domain, EGF like domain., hydrolase, sugar binding
protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP:
b.23.1.1 b.23.1.1 g.3.11.1
Length = 286
Score = 28.0 bits (62), Expect = 5.3
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 126 YHAQRYNTSAPNPCSQSPCSHLCLVIPGGYQCACPENATP 165
Y A+ + + PC H C GGY C+C
Sbjct: 115 YAAEDVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYIL 154
>2c8i_E CD55, complement decay-accelerating factor; picornavirus, DAF,
virus-receptor complex, antigen, blood group antigen,
complement pathway, GPI-anchor; 14.00A {Homo sapiens}
SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1
Length = 316
Score = 28.0 bits (62), Expect = 5.5
Identities = 8/62 (12%), Positives = 11/62 (17%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
S C + + + V E C R L C
Sbjct: 119 SDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQ 178
Query: 194 GG 195
Sbjct: 179 NL 180
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 28.0 bits (61), Expect = 6.1
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 189 CQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C+C G L C C + G C
Sbjct: 270 CKCNLHANLCSMREGSLQCECEHNTTGPDCG 300
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 28.0 bits (62), Expect = 6.2
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 108 GVPVLISKDLVN 119
G PVL S DLV+
Sbjct: 41 GAPVLKSYDLVH 52
>1ok3_A CD55, CR, DAF, complement decay-accelerating factor; regulator of
complement pathway, regulator of complement; 2.2A {Homo
sapiens} SCOP: g.18.1.1 g.18.1.1 g.18.1.1 g.18.1.1 PDB:
1ojw_A 1ojy_A 1ok1_A 1ok2_A 1ojv_A 1ok9_A 1m11_R 1nwv_A
2qzh_A 2qzf_A
Length = 254
Score = 28.0 bits (62), Expect = 6.5
Identities = 8/62 (12%), Positives = 11/62 (17%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQCQN 193
S C + + + V E C R L C
Sbjct: 56 SDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQ 115
Query: 194 GG 195
Sbjct: 116 NL 117
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain,
kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP:
g.3.11.1 g.14.1.1 PDB: 2i9b_A*
Length = 145
Score = 27.2 bits (59), Expect = 7.0
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 186 PRVCQCQNGGMC--AESETGDLTCNCRQDFAGTFCENYT 222
P C C NGG C + + CNC + F G CE
Sbjct: 10 PSNCDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEIDK 48
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 27.1 bits (60), Expect = 7.1
Identities = 21/93 (22%), Positives = 25/93 (26%), Gaps = 22/93 (23%)
Query: 133 TSAPNPCSQSPCSHLCLVIPGGYQCACPENATPKLPGVAEIRCSAAVERPRPLPRVCQ-- 190
T + C C G Y C C PG S A CQ
Sbjct: 49 TLSKVSC---GKFSDCWNTEGSYDCVCS-------PGY--EPVSGAKTFKNESENTCQDV 96
Query: 191 --CQNG-GMCAESET-----GDLTCNCRQDFAG 215
C +G C S G +C CR +
Sbjct: 97 DECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKP 129
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 27.8 bits (61), Expect = 7.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 190 QCQNGGMCAESETGDLTCNCRQDFAGTFCENYTGIG 225
C G+C + +L C C + + G+ C Y
Sbjct: 455 ICSGNGVC----SNELKCVCNRHWIGSDCNTYFPHN 486
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.0 bits (61), Expect = 8.1
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 189 CQCQNGGMCAE---SETGDLT---CNCRQDFAGTFCE 219
C C + A G L C+C G CE
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE 493
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of
BAS residues, extracellular matrix, glycoprotein,
hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo
sapiens}
Length = 378
Score = 27.7 bits (61), Expect = 8.1
Identities = 10/75 (13%), Positives = 17/75 (22%), Gaps = 4/75 (5%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPENATPKLPG----VAEIRCSAAVERPRPLPRVCQCQNG 194
C+ L + Q C P + G I +G
Sbjct: 248 PGMDVCARLWCAVVRQGQMVCLTKKLPAVEGTPCGKGRICLQGKCVDKTKKKYYSTSSHG 307
Query: 195 GMCAESETGDLTCNC 209
+ G + +C
Sbjct: 308 NWGSWGSWGQCSRSC 322
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 27.3 bits (59), Expect = 9.3
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 190 QCQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
C G C ++ C C D + +
Sbjct: 70 DCGPGKKCRMNKKNKPRCVCAPDCSNITWKG 100
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 25.6 bits (56), Expect = 9.5
Identities = 6/23 (26%), Positives = 8/23 (34%)
Query: 190 QCQNGGMCAESETGDLTCNCRQD 212
C G C ++ C C D
Sbjct: 8 DCGPGKKCRMNKKNKPRCVCAPD 30
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,656,225
Number of extensions: 411185
Number of successful extensions: 1439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 267
Length of query: 428
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 332
Effective length of database: 4,021,377
Effective search space: 1335097164
Effective search space used: 1335097164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)