RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy951
(428 letters)
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 103 bits (256), Expect = 1e-25
Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
M+W + G +I+ ++G SLV ++ P G+++D + LYWVDSKL++I S+
Sbjct: 134 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDL-LSGRLYWVDSKLHSISSID 192
Query: 61 HDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNP 120
+G NR+TIL +L HP SL VFE+ ++W +++ ++ L++++L++P
Sbjct: 193 VNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP 252
Query: 121 SGVKAYHAQR 130
+ +H
Sbjct: 253 EDMVLFHNLT 262
Score = 64.2 bits (155), Expect = 3e-12
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 2/103 (1%)
Query: 298 IVYSNGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQ 357
+ ++N E+R + + +I + R + ALD + IYW D R I + + A
Sbjct: 4 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63
Query: 358 KGQVQAVI--SDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
+ D + + L +D + IYW DS + +
Sbjct: 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 106
Score = 46.8 bits (110), Expect = 2e-06
Identities = 30/141 (21%), Positives = 48/141 (34%), Gaps = 8/141 (5%)
Query: 12 IESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILS 71
+ +D S SL+ +R+ L + A + +YW D I S + D + +
Sbjct: 12 VRKMTLDRSEYTSLI-PNLRNVVALDTEVA-SNRIYWSDLSQRMICSTQLDRAHGVSSYD 69
Query: 72 G--SDKLQHPISLDV--FENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYH 127
S +Q P L V +NIYW G++ D G L ++ P +
Sbjct: 70 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDP 129
Query: 128 AQR--YNTSAPNPCSQSPCSH 146
Y T P
Sbjct: 130 VHGFMYWTDWGTPAKIKKGGL 150
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 95.7 bits (237), Expect = 4e-23
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 1 MFWAETGA-SPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESV 59
++W + +P+IE++ MDG++RR L + P GL+ DA L WVD+ + E +
Sbjct: 136 LYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAF-SSQLCWVDAGTHRAECL 194
Query: 60 RHDGRNRQTILSGSDKLQHPISLDVFENNIYWLARDTGSLYKQDKF-GRGVPVLISKDLV 118
R+ +L G LQ+P ++ + N+Y+ T S+ D + +
Sbjct: 195 NPAQPGRRKVLEG---LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQT 251
Query: 119 NPSGVKAYHAQ 129
G+ +Q
Sbjct: 252 RLYGITIALSQ 262
Score = 52.6 bits (125), Expect = 2e-08
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 298 IVYSNGPEIRAYETHKRRFRD------VISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 351
++++ +I + + + + I L D VD+++YW D + +I R+
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 352 FMLEAQKGQVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ + D E + +D + I+W DS I +
Sbjct: 64 SL--HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVA 106
Score = 52.6 bits (125), Expect = 3e-08
Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 2/128 (1%)
Query: 17 MDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKL 76
M + ++ + + GL+ D D +YW D +I G TI+
Sbjct: 22 MKKTEAKAFLHIPAKVIIGLAFDCV-DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80
Query: 77 QHPISLDVFENNIYWLARDTGSLYKQDKFGRGVPVLISKDLVNPSGVKAYHAQRYNTSAP 136
I+LD I+W + G VL LVNP G+ R N
Sbjct: 81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGI-VTDPVRGNLYWT 139
Query: 137 NPCSQSPC 144
+ +P
Sbjct: 140 DWNRDNPK 147
Score = 38.7 bits (89), Expect = 8e-04
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 364 VISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFM 398
+ + I L D VD+++YW D + +I R+ +
Sbjct: 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65
Score = 33.3 bits (75), Expect = 0.046
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 1/97 (1%)
Query: 301 SNGPEIRAYETHKRRFRDVISD-ERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG 359
S I + + R + + DPV +YW D N +
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157
Query: 360 QVQAVISDERRIEALDIDPVDEIIYWVDSYDRNIRRS 396
+ + L D + WVD+
Sbjct: 158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 42.4 bits (100), Expect = 1e-06
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
N C + CSH+C + GY+C CP+
Sbjct: 3 NECLDNNGGCSHVCNDLKIGYECLCPD 29
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 40.6 bits (95), Expect = 7e-06
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPE 161
P C H C GG+ C+C
Sbjct: 5 QVAPGEAPTCDHHCHNHLGGFYCSCRA 31
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 40.1 bits (94), Expect = 1e-05
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 137 NPCSQS-PCSHLCLVIPGGYQCACPE 161
+ C CS LC+ + GGY+C C E
Sbjct: 2 DECQDPDTCSQLCVNLEGGYKCQCEE 27
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 38.5 bits (90), Expect = 3e-05
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN C + G+ C C + G CE T
Sbjct: 9 CQNDATC-LDQIGEFQCICMPGYEGVHCEVNT 39
Score = 33.9 bits (78), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
N C +PC + CL G +QC C
Sbjct: 2 NECVSNPCQNDATCLDQIGEFQCICMPGYE 31
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 38.6 bits (90), Expect = 3e-05
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQD-FAGTFCE 219
CQN G C + C+C + F G C
Sbjct: 9 CQNRGECMSTGFDQYKCDCTRTGFYGENCT 38
Score = 32.1 bits (73), Expect = 0.008
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 137 NPCSQSPCSH--LCLVIP-GGYQCACPE 161
NPC +PC + C+ Y+C C
Sbjct: 2 NPCCSNPCQNRGECMSTGFDQYKCDCTR 29
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 38.7 bits (90), Expect = 4e-05
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 191 CQNGGMCAESETGD-LTCNCRQDFAGTFCEN 220
C NGG+C E+ D TCNC ++G C+
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
Score = 29.1 bits (65), Expect = 0.13
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 4/32 (12%)
Query: 137 NPCSQSPCSH--LCLVIPG--GYQCACPENAT 164
C + +C+ I Y C C +
Sbjct: 7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYS 38
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 38.3 bits (89), Expect = 5e-05
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 135 APNPCSQSPCSHLCLVIPGGYQCACPE 161
+ PC H C GGY C+C
Sbjct: 5 RTSLGDSVPCDHYCHNYLGGYYCSCRV 31
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 38.1 bits (89), Expect = 6e-05
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
CQN G C + G+ TC C + F G CE +T
Sbjct: 8 CQNQGKC-KDGLGEYTCTCLEGFEGKNCELFT 38
Score = 32.0 bits (73), Expect = 0.007
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
+ C SPC + C G Y C C E
Sbjct: 1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFE 30
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 37.7 bits (88), Expect = 7e-05
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C + G C + + C C F G C+
Sbjct: 8 CLHNGRC-LDKINEFQCECPTGFTGHLCQ 35
Score = 33.9 bits (78), Expect = 0.002
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
+ C+ SPC H CL +QC CP T
Sbjct: 1 DECASSPCLHNGRCLDKINEFQCECPTGFT 30
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 37.4 bits (87), Expect = 8e-05
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
CQNGG C + C C F G CE
Sbjct: 10 CQNGGSCKDQL-QSYICFCLPAFEGRNCE 37
Score = 33.5 bits (77), Expect = 0.002
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
+ C+ SPC + C Y C C
Sbjct: 3 DQCASSPCQNGGSCKDQLQSYICFCLPAFE 32
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 37.1 bits (86), Expect = 1e-04
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 139 CSQSPCSHLCLVIPGGYQCACPE 161
PCSH C GGY C+CP
Sbjct: 6 FVDVPCSHFCNNFIGGYFCSCPP 28
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 50
Score = 37.5 bits (87), Expect = 1e-04
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
C G +C C + + G CE
Sbjct: 16 CIKGRCRFVVAEQTPSCVCDEGYIGARCER 45
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 37.1 bits (86), Expect = 1e-04
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQD-FAGTFCE 219
CQ+ G+C C+C + ++G C
Sbjct: 10 CQHQGICVRFGLDRYQCDCTRTGYSGPNCT 39
Score = 32.5 bits (74), Expect = 0.006
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 136 PNPCSQSPCSH--LCL-VIPGGYQCACPEN 162
NPC PC H +C+ YQC C
Sbjct: 2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRT 31
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 37.1 bits (86), Expect = 1e-04
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 144 CSHLCLVIPGGYQCACPE 161
C C C+C
Sbjct: 10 CDQFCHEEQNSVVCSCAR 27
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 37.7 bits (87), Expect = 1e-04
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 191 CQNGGMCAESETGDL----TCNCRQDFAGTFCEN 220
C NGG C + C C+ F G C
Sbjct: 14 CVNGGECFMVKDLSNPSRYLCKCQPGFTGARCTE 47
Score = 27.7 bits (61), Expect = 0.51
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 137 NPCSQSPCSH--LCLVIP-----GGYQCACPENAT 164
++ C + C ++ Y C C T
Sbjct: 7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFT 41
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 37.2 bits (86), Expect = 2e-04
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 191 CQNGGMCAESETGD-LTCNCRQDFAGTFCE 219
C + G+C E D CNC + G C+
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIGERCQ 41
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 37.1 bits (86), Expect = 2e-04
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 144 CSHLCLVIPGGYQCACPE 161
C+H CL G +C+C
Sbjct: 9 CTHYCLEEVGWRRCSCAP 26
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 36.6 bits (85), Expect = 2e-04
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C NGG C + C C F G CE
Sbjct: 11 CLNGGSCKDDI-NSYECWCPFGFEGKNCE 38
Score = 34.3 bits (79), Expect = 0.001
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
+ C +PC + C Y+C CP
Sbjct: 4 DQCESNPCLNGGSCKDDINSYECWCPFGFE 33
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 36.7 bits (85), Expect = 2e-04
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 144 CSHLCLVIPGGYQCACPE 161
C C +C+C
Sbjct: 8 CDQFCREERSEVRCSCAH 25
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 36.4 bits (84), Expect = 2e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 191 CQNGGMCAES-ETGDLTCNCRQDFAGTFCEN 220
C NGG C ++ D C C + FAG CE
Sbjct: 6 CFNGGTCQQALYFSDFVCQCPEGFAGKSCEI 36
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 36.2 bits (84), Expect = 2e-04
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C++ G C + G C C Q + G CE
Sbjct: 13 CEHAGKCINTL-GSFECQCLQGYTGPRCE 40
Score = 29.3 bits (66), Expect = 0.079
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 137 NPCSQ--SPCSH--LCLVIPGGYQCACPE 161
+ CS +PC H C+ G ++C C +
Sbjct: 4 DECSLGANPCEHAGKCINTLGSFECQCLQ 32
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 35.9 bits (83), Expect = 3e-04
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCEN 220
C G C + TC C F+G CE
Sbjct: 9 CSGHGEC-VETINNYTCKCDPGFSGLKCEQ 37
Score = 31.7 bits (72), Expect = 0.010
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
C+ + CS C+ Y C C +
Sbjct: 2 AACTNTSCSGHGECVETINNYTCKCDPGFS 31
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 35.9 bits (83), Expect = 3e-04
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 137 NPCSQ-SPCSHLCLVIPGGYQCACP 160
+ C CS +C +PG ++C C
Sbjct: 3 DECENGGFCSGVCHNLPGTFECICG 27
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 49
Score = 36.0 bits (83), Expect = 4e-04
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
C +G + C C + G CE+
Sbjct: 15 CFHGTCRFLVQEDKPACVCHSGYVGARCEHAD 46
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 35.5 bits (82), Expect = 4e-04
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
C G C G+ TC+C F G CE
Sbjct: 9 CSKQGEC-LETIGNYTCSCYPGFYGPECE 36
Score = 31.3 bits (71), Expect = 0.013
Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 137 NPCSQSPCSH--LCLVIPGGYQCACPENAT 164
C CS CL G Y C+C
Sbjct: 2 ASCQDMSCSKQGECLETIGNYTCSCYPGFY 31
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 35.5 bits (82), Expect = 5e-04
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 191 CQNGGMCAESETGDLTCNCRQDFAGTFCENYT 222
C +G + C C + G CE++
Sbjct: 14 CLHGQCIYLVDMSQNYCRCEVGYTGVRCEHFF 45
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 33.7 bits (77), Expect = 0.002
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
N C S C+ PG Y C CP
Sbjct: 4 NECLDPTTCISGNCVNTPGSYICDCPP 30
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 37.1 bits (84), Expect = 0.002
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 1 MFWAETGASPRIESAWMDGSHRRSLVMTGVRHPTGLSVDAAMDHTLYWVDSKLNTIESVR 60
+ + ++ + L TG+ P ++VD+ D T+Y D + + +
Sbjct: 194 TVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS--DRTVYVADRGNDRVVKLT 251
Query: 61 HDGRNRQ 67
+
Sbjct: 252 SLEHHHH 258
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 33.8 bits (77), Expect = 0.002
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 132 NTSAPNPCSQSPCSHLCLVIPGGYQCACPE 161
+ + Q C HLC GGY C+C
Sbjct: 10 RSKSGEEDPQPQCQHLCHNYVGGYFCSCRP 39
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 33.8 bits (77), Expect = 0.003
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 11/36 (30%)
Query: 137 NPCSQSP-----CSHLCLVIP------GGYQCACPE 161
N C ++ C +LCL P + CACP+
Sbjct: 2 NWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPD 37
>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 33.6 bits (77), Expect = 0.003
Identities = 6/19 (31%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 144 CSHLCLVIPGG-YQCACPE 161
C C G C C E
Sbjct: 9 CEQYCSDHTGTKRSCRCHE 27
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 33.0 bits (75), Expect = 0.004
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 189 CQCQNGGMCAESE--TGDLTCNCRQDFAGTFCE 219
C C NGG C ++ + CNC + F G CE
Sbjct: 2 CDCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE 34
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 32.5 bits (74), Expect = 0.006
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 136 PNPCSQSPCSH-LCLVIPGGYQCACPE 161
+PC+ C H C+ G + C C
Sbjct: 8 EHPCASLCCGHGTCIDGIGSFSCDCRS 34
Score = 31.7 bits (72), Expect = 0.014
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 174 RCSAAVERPRPLPRVCQ---CQNGGMCAESETGDLTCNCRQDFAGTFCE 219
+C PL C C +G C + +C+CR + G FC+
Sbjct: 1 QCLVL-----PLEHPCASLCCGHGT-CIDGIGS-FSCDCRSGWEGRFCQ 42
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 32.0 bits (73), Expect = 0.007
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 137 NPCSQSP--CSHLCLVIPGGYQCACPE 161
+ C + C+ G Y+C CP
Sbjct: 6 DECKEPDVCKHGQCINTDGSYRCECPF 32
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 43
Score = 32.2 bits (73), Expect = 0.008
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 137 NPCSQSPCSHLCLVI-PGGYQCACPENATPK 166
+PC ++ C + C + Y C C E P
Sbjct: 5 DPCFRANCEYQCQPLDQTSYLCVCAEGFAPI 35
>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 57
Score = 32.5 bits (74), Expect = 0.008
Identities = 5/19 (26%), Positives = 6/19 (31%), Gaps = 1/19 (5%)
Query: 144 CSHLCLVIPG-GYQCACPE 161
C C C+C E
Sbjct: 10 CEQFCKNSADNKVVCSCTE 28
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 32.2 bits (73), Expect = 0.010
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 189 CQCQNGGMCAE-SETGDLTC-NCRQDFAGTFCE 219
C C G CA +T ++ C +C AG CE
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCE 33
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 31.7 bits (72), Expect = 0.012
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 137 NPCSQSP---CSHLCLVIPGGYQCACPE 161
+ C + P C+ G +QC CP
Sbjct: 4 DECQELPGLCQGGKCINTFGSFQCRCPT 31
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 29.8 bits (67), Expect = 0.046
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 137 NPCSQSP--CSH-LCLVIPGGYQCACPE 161
+ C + P C +C G Y+C CP
Sbjct: 3 DECQRDPLLCRGGVCHNTEGSYRCECPP 30
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 29.4 bits (66), Expect = 0.062
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 137 NPCSQSP--CSH-LCLVIPGGYQCACPE 161
+ C SP C C+ PG ++C C E
Sbjct: 4 DECRISPDLCGRGQCVNTPGDFECKCDE 31
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 28.7 bits (64), Expect = 0.13
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 134 SAPNPCSQSPCSHLCLVIPGGYQCACPENATP 165
S NPC C + + GG++C C E P
Sbjct: 5 SVGNPCGNGTCKN----VIGGFECTCEEGFEP 32
>d1jb7a3 b.40.4.3 (A:329-495) Telomere end binding protein alpha
subunit {Oxytricha nova [TaxId: 200597]}
Length = 167
Score = 28.0 bits (62), Expect = 1.5
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 17/72 (23%)
Query: 302 NGPEIRAYETHKRRFRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKG-- 359
+ E++A +T + +F I+P D + WV YDR ++S L+ G
Sbjct: 31 SDKELQAQDTFRTQF----------YVTKIEPSD-VKEWVKGYDRKTKKSSSLKGASGKG 79
Query: 360 ----QVQAVISD 367
QVQ ++ D
Sbjct: 80 DNIFQVQFLVKD 91
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 25.1 bits (55), Expect = 2.3
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 5/38 (13%)
Query: 182 PRPLPRVCQCQNGGMCAESETGDLTCNCRQDFAGTFCE 219
R +VC G+C + C C F G+ C+
Sbjct: 8 ERYNGQVCGGPGRGLCFCGK-----CRCHPGFEGSACQ 40
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 26.4 bits (58), Expect = 2.6
Identities = 10/70 (14%), Positives = 23/70 (32%)
Query: 232 RSLLYIPTLLLLLALVSATVYYVWRKRPFGKTMGSALSTQSVSFRQGTNVEFGAPAFNNG 291
R+ LL+++ L + + + + G + + S T V +G
Sbjct: 6 RAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTL 65
Query: 292 ASLGLTIVYS 301
+ +V
Sbjct: 66 WGRCVAVVVM 75
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein
Spo0B {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 27.1 bits (58), Expect = 3.0
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
Query: 39 DAAMDHTLYWVDSKLNTIESVRHDGRNRQTILSGSDKLQHPISLDVFENNIYW 91
D A+ + ++ + RHD N+ ++ G+ LQ + +
Sbjct: 2 DTAL------TNELIHLLGHSRHDWMNKLQLIKGNLSLQKYDRVFEMIEEMVI 48
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 24.8 bits (54), Expect = 3.2
Identities = 7/34 (20%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 189 CQCQNGGMCAESETGDLT---CNCRQDFAGTFCE 219
C C G + + + C C +G C
Sbjct: 1 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCG 34
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 23.9 bits (52), Expect = 6.9
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 201 ETGDLTCNCRQDFAGTFCENYT 222
E +C C + G C +
Sbjct: 20 ELRAPSCICHPGYHGERCHGLS 41
>d1u09a_ e.8.1.4 (A:) Viral RNA polymerase {Foot-and-mouth disease
virus [TaxId: 12110]}
Length = 476
Score = 26.5 bits (58), Expect = 8.4
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 8/63 (12%)
Query: 289 NNGASLGLTIVYSNGPEIRAYETH--------KRRFRDVISDERRIEALDIDPVDEIIYW 340
+ SLG TI ++ + H KR F + ++ I+ +
Sbjct: 355 PHFKSLGQTITPADKSDKGFVLGHSITDVTFLKRHFHMDYGTGFYKPVMASKTLEAILSF 414
Query: 341 VDS 343
Sbjct: 415 ARR 417
>d1teja_ g.20.1.1 (A:) Schistatin {Saw-scaled viper (Echis
carinatus), different isoforms [TaxId: 40353]}
Length = 62
Score = 24.0 bits (52), Expect = 8.4
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 139 CSQSPCSHLCLVIPGGYQC 157
C PC + C + G C
Sbjct: 19 CISGPCCNNCKFLNSGTIC 37
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 26.0 bits (56), Expect = 8.5
Identities = 8/48 (16%), Positives = 14/48 (29%), Gaps = 2/48 (4%)
Query: 319 VISDERRIEALDIDPVD--EIIYWVDSYDRNIRRSFMLEAQKGQVQAV 364
++ DE +DP + II + RN+
Sbjct: 16 ILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGN 63
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 25.8 bits (55), Expect = 9.5
Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 4/101 (3%)
Query: 316 FRDVISDERRIEALDIDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAVISDERRIEALD 375
+ ++ ++E L+ D ++ +D ++ NI + + K + +S + A+
Sbjct: 32 WLEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFK--INPETKEIKRPFVSHKANPAAIK 88
Query: 376 IDPVDEIIYWVDSYDRNIRRSFMLEAQKGQVQAGASRHQNG 416
I D ++ D + G +
Sbjct: 89 IHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,615,783
Number of extensions: 77777
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 77
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)