Query psy9511
Match_columns 1301
No_of_seqs 87 out of 89
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 21:25:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xq8_A Alpha-synuclein; micell 0.9 1.7E+03 0.06 22.6 1.3 22 366-389 117-138 (140)
2 4ajy_B Transcription elongatio 0.6 4E+03 0.14 19.1 2.2 28 183-210 79-107 (118)
3 2klu_A T-cell surface glycopro 0.4 2.5E+03 0.084 19.3 -0.1 10 811-820 39-48 (70)
4 2rh2_A Dihydrofolate reductase 0.4 3.3E+03 0.11 17.6 0.6 11 999-1009 30-40 (62)
5 2fnj_B Transcription elongatio 0.4 4.9E+03 0.17 18.3 1.8 29 183-211 79-108 (118)
6 3n6y_A Immunoglobulin-like pro 0.4 3E+03 0.1 20.9 -0.0 9 165-173 21-29 (137)
7 1by6_A Apolipoprotein C-II; am 0.4 2.5E+03 0.085 17.2 -0.5 7 1292-1298 24-30 (36)
8 3epz_A DNA (cytosine-5)-methyl 0.4 2.8E+03 0.094 23.2 -0.3 12 408-419 144-155 (268)
9 1rk8_C PYM protein, within the 0.3 4.7E+03 0.16 17.0 0.8 18 126-143 18-37 (58)
10 2lmd_A Prospero homeobox prote 0.3 3.5E+03 0.12 20.9 -0.0 7 1290-1296 66-72 (174)
No 1
>1xq8_A Alpha-synuclein; micelle-bound helix, lipid binding protein; NMR {Homo sapiens} SCOP: h.7.1.1 PDB: 2kkw_A
Probab=0.92 E-value=1.7e+03 Score=22.61 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=15.7
Q ss_pred CCCCCCCCCCcCCCchhhhhcccc
Q psy9511 366 NLRPDGGKFSSETSSSETFQAHQI 389 (1301)
Q Consensus 366 nLkpEG~f~~~e~~~~~~y~~~~~ 389 (1301)
-|.+||+-| +-++.+.||+|.+
T Consensus 117 ~~d~ege~y--e~~~qee~q~yep 138 (140)
T 1xq8_A 117 PVDPDNEAY--EMPSEEGYQDYEP 138 (140)
T ss_dssp CCBTTTBTT--TSSCTTCCSSCSS
T ss_pred ccCCCCCCc--CCCchhhhhccCC
Confidence 367888864 5567778888764
No 2
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=0.56 E-value=4e+03 Score=19.12 Aligned_cols=28 Identities=32% Similarity=0.595 Sum_probs=16.6
Q ss_pred CCCCCCccccCCCCCCC-CCCCCCCCCCC
Q psy9511 183 LKPEGDFERPLHEKYSP-AERPKSVKPKD 210 (1301)
Q Consensus 183 L~peG~fe~~~~~~~~p-~eRp~~~kp~D 210 (1301)
|+..|.||...-..|.. -|=|.++||+|
T Consensus 79 lr~~~~fE~l~i~p~s~pp~lp~~~~~~~ 107 (118)
T 4ajy_B 79 FRADDTFEALCIEPFSSPPELPDVMKPQD 107 (118)
T ss_dssp ECCSSCCCCCCBCCCCCCCCCCGGGCC--
T ss_pred EecCCCccceEEecCCCCCCccccccccc
Confidence 44567777666666653 56777777765
No 3
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=0.45 E-value=2.5e+03 Score=19.34 Aligned_cols=10 Identities=50% Similarity=0.730 Sum_probs=5.5
Q ss_pred Cccccccccc
Q psy9511 811 KQAERVEAFK 820 (1301)
Q Consensus 811 ~paER~~~~r 820 (1301)
+.|||.+|||
T Consensus 39 rqAeRMSQik 48 (70)
T 2klu_A 39 RQAERMSQIK 48 (70)
T ss_dssp SSCTTSSHHH
T ss_pred HHHHHHHHHH
Confidence 3455655554
No 4
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=0.44 E-value=3.3e+03 Score=17.60 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=7.5
Q ss_pred CCCCCCCCCCc
Q psy9511 999 LRDNLKPEGEF 1009 (1301)
Q Consensus 999 p~DNLkpEGeF 1009 (1301)
-|.||.|||-.
T Consensus 30 yct~ltpegya 40 (62)
T 2rh2_A 30 YCTNLTPEGYA 40 (62)
T ss_dssp ECCSSCSSEEE
T ss_pred EEccccccceE
Confidence 36777777754
No 5
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=0.40 E-value=4.9e+03 Score=18.31 Aligned_cols=29 Identities=31% Similarity=0.576 Sum_probs=11.3
Q ss_pred CCCCCCccccCCCCCCC-CCCCCCCCCCCC
Q psy9511 183 LKPEGDFERPLHEKYSP-AERPKSVKPKDN 211 (1301)
Q Consensus 183 L~peG~fe~~~~~~~~p-~eRp~~~kp~DN 211 (1301)
|+..|.||...-..|.. -+=|.++||+++
T Consensus 79 lr~~g~fe~l~i~~~s~pp~~p~~~~~~~~ 108 (118)
T 2fnj_B 79 FRADDTFEALRIEPFSSPPELPDVMKPQDS 108 (118)
T ss_dssp EBSSSCBCCCCBCCCCCCCC----------
T ss_pred ecCCCceeeeEEecCCCCCCcchhhccccC
Confidence 45556677666666654 466666666653
No 6
>3n6y_A Immunoglobulin-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 1.50A {Pseudomonas aeruginosa}
Probab=0.39 E-value=3e+03 Score=20.89 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q psy9511 165 PEKYGPGER 173 (1301)
Q Consensus 165 ~~~y~pgER 173 (1301)
+.+|.||||
T Consensus 21 ~~~~~~ger 29 (137)
T 3n6y_A 21 YQDFQPGER 29 (137)
T ss_dssp ---------
T ss_pred hhhcCCccE
Confidence 334444444
No 7
>1by6_A Apolipoprotein C-II; amphipathic helix, lipid association, LPL activation, signaling protein; NMR {Synthetic} SCOP: j.39.1.1
Probab=0.38 E-value=2.5e+03 Score=17.24 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=2.9
Q ss_pred hHHhhhc
Q psy9511 1292 FYNQLYS 1298 (1301)
Q Consensus 1292 ~~~~~~~ 1298 (1301)
|-+|||+
T Consensus 24 ~~DQlyh 30 (36)
T 1by6_A 24 FTDQVLS 30 (36)
T ss_dssp CCSGGGS
T ss_pred HHHHHHH
Confidence 3344444
No 8
>3epz_A DNA (cytosine-5)-methyltransferase 1; winged helix domain, SH3-like barrel, cell cycle, metal BIND binding,DNA replication; HET: DNA BGC; 2.31A {Homo sapiens}
Probab=0.38 E-value=2.8e+03 Score=23.18 Aligned_cols=12 Identities=17% Similarity=0.384 Sum_probs=6.9
Q ss_pred eEEecccccccc
Q psy9511 408 MIFVTSAHEEFT 419 (1301)
Q Consensus 408 f~~~t~~~~df~ 419 (1301)
++..++.-.+|.
T Consensus 144 lI~isT~~AdY~ 155 (268)
T 3epz_A 144 LIGFSTSFAEYI 155 (268)
T ss_dssp EEEEECSSCEEE
T ss_pred eEEEEeccEEEE
Confidence 555555555665
No 9
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=0.33 E-value=4.7e+03 Score=16.96 Aligned_cols=18 Identities=33% Similarity=0.833 Sum_probs=0.0
Q ss_pred CCCCCc--cCCCCCCCCcCC
Q psy9511 126 RPEGDF--DRPQAGKFIPAE 143 (1301)
Q Consensus 126 rpEG~f--~~~~k~~~~pae 143 (1301)
||.|.+ +..-+++|.|.|
T Consensus 18 RpDGT~RK~irVr~GY~Pqe 37 (58)
T 1rk8_C 18 RPDGTWRKARRVKDGYVPQE 37 (58)
T ss_dssp CTTSCEECCEECCTTCCC--
T ss_pred CCCCccccceeccCCcCCHH
No 10
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=0.33 E-value=3.5e+03 Score=20.88 Aligned_cols=7 Identities=57% Similarity=1.246 Sum_probs=0.0
Q ss_pred eehHHhh
Q psy9511 1290 EFFYNQL 1296 (1301)
Q Consensus 1290 ~~~~~~~ 1296 (1301)
||||.|+
T Consensus 66 EFyYIQM 72 (174)
T 2lmd_A 66 EFYYIQM 72 (174)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Done!