Query psy9511
Match_columns 1301
No_of_seqs 87 out of 89
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 21:26:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9511.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9511hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2rh2a1 b.34.4.1 (A:21-78) R67 0.4 1.5E+03 0.11 17.5 0.6 11 999-1009 26-36 (58)
2 d1rp4a_ a.227.1.1 (A:) Endopla 0.3 1.3E+03 0.092 24.2 -1.0 12 408-419 125-136 (374)
3 d1v4ra1 a.4.5.6 (A:1-100) Tran 0.3 1.8E+03 0.13 18.0 0.1 33 118-150 50-82 (100)
4 d2fug91 d.58.1.5 (9:26-179) NA 0.3 2.8E+03 0.2 17.6 1.6 23 298-320 82-104 (154)
5 d1ejxb_ b.85.3.1 (B:) Urease, 0.3 2E+03 0.15 18.8 -0.1 7 1200-1206 30-36 (101)
6 d1e32a3 d.31.1.1 (A:107-200) M 0.3 3.7E+03 0.27 16.4 1.9 19 235-253 70-88 (94)
7 d1ux6a1 b.29.1.16 (A:937-1152) 0.3 2.6E+03 0.19 20.0 0.7 31 401-451 51-81 (216)
8 d1y7ma2 d.7.1.1 (A:1-48) Hypot 0.3 2.6E+03 0.19 14.8 0.5 7 235-241 6-12 (48)
9 d2dw4a2 c.3.1.2 (A:274-654,A:7 0.3 3.3E+03 0.24 16.9 1.4 32 79-110 397-428 (449)
10 d2icya1 b.81.1.4 (A:384-466) U 0.2 2.3E+03 0.16 17.7 -0.0 16 395-410 32-47 (83)
No 1
>d2rh2a1 b.34.4.1 (A:21-78) R67 dihydrofolate reductase {Escherichia coli, plasmid PLZ1 [TaxId: 562]}
Probab=0.45 E-value=1.5e+03 Score=17.50 Aligned_cols=11 Identities=45% Similarity=0.561 Sum_probs=7.7
Q ss_pred CCCCCCCCCCc
Q psy9511 999 LRDNLKPEGEF 1009 (1301)
Q Consensus 999 p~DNLkpEGeF 1009 (1301)
-|.||.|||-.
T Consensus 26 yct~ltpegya 36 (58)
T d2rh2a1 26 YCTNLTPEGYA 36 (58)
T ss_dssp ECCSSCSSEEE
T ss_pred EEccccccceE
Confidence 36778888765
No 2
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=0.33 E-value=1.3e+03 Score=24.16 Aligned_cols=12 Identities=42% Similarity=0.551 Sum_probs=4.3
Q ss_pred eEEecccccccc
Q psy9511 408 MIFVTSAHEEFT 419 (1301)
Q Consensus 408 f~~~t~~~~df~ 419 (1301)
.++...+-+-||
T Consensus 125 YVdLl~NPERyT 136 (374)
T d1rp4a_ 125 LIDLTANPERFT 136 (374)
T ss_dssp EEETTTSCCCCC
T ss_pred EeehhhCccccc
Confidence 333333333333
No 3
>d1v4ra1 a.4.5.6 (A:1-100) Transcriptional repressor TraR, N-terminal domain {Streptomyces sp. [TaxId: 1931]}
Probab=0.32 E-value=1.8e+03 Score=18.05 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=19.5
Q ss_pred ccccCCCCCCCCCccCCCCCCCCcCCCCCCCCC
Q psy9511 118 IVKHADNLRPEGDFDRPQAGKFIPAERPKAVKP 150 (1301)
Q Consensus 118 ~vr~~DnLrpEG~f~~~~k~~~~paeRp~~~kp 150 (1301)
+.+-=+-|.-+|-.+.....++.=+.+|.....
T Consensus 50 vr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~~~ 82 (100)
T d1v4ra1 50 VSRALAVLKSEGLVSSRGALGTVVEKNPIVITG 82 (100)
T ss_dssp HHHHTTTTTTSSCCEEETTTEEESCSCCCCCSS
T ss_pred HHHHHHHHHHCCcEEEecCCEEEECCCCcccch
Confidence 333445577788888777666654555544433
No 4
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]}
Probab=0.32 E-value=2.8e+03 Score=17.59 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=16.4
Q ss_pred cccCCCccccccccccccccccc
Q psy9511 298 IRRNTWTKLEGEFTSETTSQTEF 320 (1301)
Q Consensus 298 iRp~DnLk~eGeF~~~T~n~~eF 320 (1301)
+-|.+.|.+.++|+..+.++.++
T Consensus 82 ~CPt~AI~~~~~~e~~~~~r~~l 104 (154)
T d2fug91 82 ACPTGAIVLGYDFEMADYEYSDL 104 (154)
T ss_dssp HCSSSCEEECSCCCCCBSCGGGS
T ss_pred hCCCCeEeccCccccccCCHHHh
Confidence 34667788888888877665544
No 5
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes [TaxId: 28451]}
Probab=0.27 E-value=2e+03 Score=18.84 Aligned_cols=7 Identities=43% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCCCCCc
Q psy9511 1200 GDRAPVK 1206 (1301)
Q Consensus 1200 ~eR~~~~ 1206 (1301)
||||+|+
T Consensus 30 GDRpIQV 36 (101)
T d1ejxb_ 30 GDRPIQV 36 (101)
T ss_dssp SSSCEEE
T ss_pred CCcceee
No 6
>d1e32a3 d.31.1.1 (A:107-200) Membrane fusion atpase p97 domain 2, P97-Nc {Mouse (Mus musculus) [TaxId: 10090]}
Probab=0.27 E-value=3.7e+03 Score=16.44 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcccCCCCC
Q psy9511 235 VKPQDNLKPEGEFERPSQP 253 (1301)
Q Consensus 235 vrp~DNLkpEGdF~~~~k~ 253 (1301)
|-+.+.+.+||+...++..
T Consensus 70 V~~~T~I~~eGepi~Red~ 88 (94)
T d1e32a3 70 VAPDTVIHCEGEPIKREDE 88 (94)
T ss_dssp ECTTCCCBCCSCCBCCCTT
T ss_pred EcCCCEEEeCCcccchhhh
No 7
>d1ux6a1 b.29.1.16 (A:937-1152) Thrombospondin C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.26 E-value=2.6e+03 Score=20.01 Aligned_cols=31 Identities=16% Similarity=0.357 Sum_probs=0.0
Q ss_pred CcccCCceEEeccccccccccCCccccccccccccccCCcceeccCccccc
Q psy9511 401 NLVQEGEMIFVTSAHEEFTEKTPERVKPQRRRTWTKQDGEIYFQTTSATEF 451 (1301)
Q Consensus 401 NLr~EGef~~~t~~~~df~~~~~e~~~~~~~~~~~k~eg~~~~~~~~k~~~ 451 (1301)
++-.+|.|..-+..-+||++ |++.=++-..|
T Consensus 51 ~Vdf~GTf~Vnt~~DDD~iG--------------------FVFgYQss~~F 81 (216)
T d1ux6a1 51 AVDFSGTFFINTERDDDYAG--------------------FVFGYQSSSRF 81 (216)
T ss_dssp SEEEEEEEEECCSSCCCEEE--------------------EEEEEEETTEE
T ss_pred cEEEEEEEEECCCCCCCEEE--------------------EEEEEecCCeE
No 8
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=0.25 E-value=2.6e+03 Score=14.84 Aligned_cols=7 Identities=57% Similarity=0.695 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy9511 235 VKPQDNL 241 (1301)
Q Consensus 235 vrp~DNL 241 (1301)
|+++|+|
T Consensus 6 V~~GDTL 12 (48)
T d1y7ma2 6 VKQGDTL 12 (48)
T ss_dssp CCTTCCH
T ss_pred ECCCCCH
No 9
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.25 E-value=3.3e+03 Score=16.95 Aligned_cols=32 Identities=13% Similarity=-0.046 Sum_probs=0.0
Q ss_pred CCCCCCCCCCccCCCCCCCCCCcccCCCccCC
Q psy9511 79 EGFTPAERPKLVKPKDNLKPEGDFERPLVEKY 110 (1301)
Q Consensus 79 ~~~~paer~~~~kp~DNL~peG~f~~~~~~~~ 110 (1301)
+.+...-++....|.+||...|+-....-+.|
T Consensus 397 p~~~~~~~~~~~~~~~~l~fAGe~t~~~~~g~ 428 (449)
T d2dw4a2 397 PITPGPSIPGAPQPIPRLFFAGEHTIRNYPAT 428 (449)
T ss_dssp CBCC---------CCCCEEECSGGGCTTSCSS
T ss_pred CccccccchhhcCCCCCEEEEcCCcCCCCcee
No 10
>d2icya1 b.81.1.4 (A:384-466) UDP-glucose pyrophosphorylase 2 (UDPGP 2) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=0.24 E-value=2.3e+03 Score=17.70 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=0.0
Q ss_pred hcccCCCcccCCceEE
Q psy9511 395 IRRREDNLVQEGEMIF 410 (1301)
Q Consensus 395 ~~rp~DNLr~EGef~~ 410 (1301)
+++.-|+|++.|+..|
T Consensus 32 sl~e~d~LtV~GdV~F 47 (83)
T d2icya1 32 SIVELDSLKVSGDVWF 47 (83)
T ss_dssp BCTTEEEEEEESEEEE
T ss_pred ChhhCCEEEEEeeEEE
Done!