RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9511
(1301 letters)
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 35.5 bits (82), Expect = 0.18
Identities = 37/241 (15%), Positives = 50/241 (20%), Gaps = 30/241 (12%)
Query: 829 GDFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEF----ERPEYPEFQ--KGERPKAFKP- 881
+F+ D P + D+LYP E + + R
Sbjct: 27 ENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLD 86
Query: 882 HDNLKPEGDFERPVKEKPKQAEKVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAPVKKP 941
+ P P A G PV
Sbjct: 87 KPDSLPASRELPPGPTPVPPGGFRGA---------SSPRLGADSTSPRFLYQVNFPVILA 137
Query: 942 QDNLYPEGEFERPEYQEFQKAERPKAFK--------PHDNLKPEGDFERPIKEKPKQAER 993
E E +E + ++ K P K + K+A R
Sbjct: 138 PIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLTKKAAR 197
Query: 994 VEPFKLRDNLKPEGEFEGRPK-----DDYGPKVGDRAPVKKPQDNLYPEGEFE-RPEYPE 1047
E G K DD V P LYP E P P
Sbjct: 198 KRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVLYPPLLTEYVPYKPA 257
Query: 1048 F 1048
Sbjct: 258 C 258
Score = 34.0 bits (78), Expect = 0.69
Identities = 32/243 (13%), Positives = 47/243 (19%), Gaps = 34/243 (13%)
Query: 651 GEFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEF----ERPEYPEFQ--KAERPKAFKP- 703
F+ D P + D+LYP E + + R
Sbjct: 27 ENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRPPRGPEQTLD 86
Query: 704 HDNLKPEGDFERPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKP 763
+ P P G G PV
Sbjct: 87 KPDSLPASRELPPGPTPVPPGGFR---------GASSPRLGADSTSPRFLYQVNFPVILA 137
Query: 764 QDNLYPEGEFERPEYPEFQKAERPKAFK-PHDNLKPEGDFERPVKEKPKQAERVEAFKMK 822
E E E + ++ K + F + K + + K
Sbjct: 138 PIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSGLT--KKA 195
Query: 823 DNLKPEGDFEGRPK--------------DDYGPKVGDRAPVKKPQDNLYPEGEFE-RPEY 867
+ + DD V P LYP E P
Sbjct: 196 ARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETDPATRQVPVPVHVLYPPLLTEYVPYK 255
Query: 868 PEF 870
P
Sbjct: 256 PAC 258
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 33.1 bits (75), Expect = 1.2
Identities = 34/179 (18%), Positives = 66/179 (36%), Gaps = 17/179 (9%)
Query: 30 PVKKPEDNLKPEGAFERPVPE-KYGPGERAP---IVKHPDNLKPEGGFERPQPEGFTPAE 85
PV + + +P + PG + I P+ + + +P + P +
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398
Query: 86 RPKLVKPKDNLKPEGDFERPLVEKYGPGERAPIVKHADNLRPEGDFDRPQAGKFIPAERP 145
+P V+P+ + Y P P + PE +P AG AE
Sbjct: 399 QP--VQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPE----QPVAGNAWQAEEQ 452
Query: 146 KAV-KPQDNLKPEGEFERPIPEKYGPGERAPIVKHPDNLKPEGDFERPLHEKYSPAERP 203
++ PQ + E +++P ++ ++ V+ ++PE P+ E+ PA P
Sbjct: 453 QSTFAPQSTYQTEQTYQQPAAQEP-LYQQPQPVEQQPVVEPE-----PVVEETKPARPP 505
>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). While some current members of
this family carry designations as putative alginate
lyase, it seems no sequence with a direct
characterization as such is detected by this model
[Energy metabolism, Fermentation].
Length = 336
Score = 31.2 bits (71), Expect = 3.9
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 26/101 (25%)
Query: 712 DFERPVKEKPKQGER----------VEPI--KVRDNLKPEGEFEGRPK----DDYG--PK 753
D + P KPK G R V P+ KVR + PE G+PK D G
Sbjct: 19 DIDLP---KPKPGGRDLLVEVKAISVNPVDTKVRARMAPE---AGQPKILGWDAAGVVVA 72
Query: 754 IGDRAPVKKPQDNLYPEGEFERP-EYPEFQKA-ERPKAFKP 792
+GD + KP D ++ G+ +RP EF ER KP
Sbjct: 73 VGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKP 113
>gnl|CDD|236164 PRK08142, PRK08142, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 30.8 bits (70), Expect = 5.7
Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 435 TKQDGEIYFQTTSATEFTEHSTTDLRQAQVRHVDNLKTGG-------------------- 474
+ D + YF A S D ++RHVD+ +TGG
Sbjct: 43 SLADVDGYFCAGDAPGLGPASMVDYLGLKLRHVDSTETGGSSYLAHVGHAAQAIAAGKCS 102
Query: 475 ----TFEGKPKDDYMPVTAERPKQQKPKDNLRPEGDFERP 510
T G+P+ + T R P+ FE P
Sbjct: 103 VALITLAGRPRSEGSSGTEPRNWGAD-----APDAPFEAP 137
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 30.6 bits (69), Expect = 7.8
Identities = 55/239 (23%), Positives = 78/239 (32%), Gaps = 66/239 (27%)
Query: 1011 GRPKDDYG-PKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGDF 1069
RP + YG P+ DR P QD L P RP YP +Q+ P G +
Sbjct: 115 RRPYEGYGGPRADDRPPGLPRQDQL-PTA---RPAYPAYQQRPEP------------GAW 158
Query: 1070 ERPVKEKPKQAERVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAPVKKPQDNLYPEGEF 1129
R + Q +R+ F P+ Y PE E
Sbjct: 159 PRAADDYGWQQQRL-GFP--------------PRAPYASPASY-----------APEQER 192
Query: 1130 ERPEYPEFQKAERPMAFKPHDNLKPEGDFERPVKEKPKQAERVEPFKVKDNLKPEGEFEG 1189
+R Y A RP +D + + D RP ++P++ P +P
Sbjct: 193 DREPY----DAGRP----EYDQRRRDYDHPRPDWDRPRRDRTDRP-------EPPPGAGH 237
Query: 1190 RPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAFKPHDNLKPEGDFD 1248
+ GP D APV + + P Q A P +P L P+ FD
Sbjct: 238 VHRGGPGPPERDDAPVVPIRPSA--------PGPLAAQPAPAPGPGEPTARLNPKYTFD 288
>gnl|CDD|237841 PRK14867, PRK14867, DNA topoisomerase VI subunit B; Provisional.
Length = 659
Score = 30.2 bits (68), Expect = 9.8
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Query: 298 IRRNTW--TKLEGEFTSETTSQTEFKRFD-------STQRTEIVKRRSDNLTVLPRNKDD 348
+R W T++EGEF T ++ E F+ ST +I + + V R D+
Sbjct: 163 VREGFWRGTRVEGEFKEVTYNRREQGPFEYLRRISLSTPHAKITLKDPEETVVFDRTVDE 222
Query: 349 HPEKWKVKPEKPKKHQDNLRPD 370
PE KPE+ K H L D
Sbjct: 223 IPE----KPEEMKPHPYGLTTD 240
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.137 0.408
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 69,953,764
Number of extensions: 7243726
Number of successful extensions: 3995
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3905
Number of HSP's successfully gapped: 116
Length of query: 1301
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1193
Effective length of database: 6,147,370
Effective search space: 7333812410
Effective search space used: 7333812410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (28.8 bits)