RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9511
         (1301 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.3 bits (67), Expect = 2.1
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 18/38 (47%)

Query: 900 KQAEKVEAFKMKDNLKPEGDFEGRPKDDYGPKVGDRAP 937
           KQA K    K++ +LK            Y     D AP
Sbjct: 19  KQALK----KLQASLKL-----------YAD---DSAP 38



 Score = 29.9 bits (66), Expect = 3.0
 Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 12/33 (36%)

Query: 27 DRAPVKKPEDNLKPEGAFERPVPEKYGPGERAP 59
          ++  +KK + +LK            Y   + AP
Sbjct: 18 EKQALKKLQASLKL-----------YAD-DSAP 38



 Score = 29.5 bits (65), Expect = 4.6
 Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 6/23 (26%)

Query: 2  RLEDQLHLEGDYSPQRKDEYPAV 24
          +L+  L L   Y+    D  PA+
Sbjct: 24 KLQASLKL---YAD---DSAPAL 40



 Score = 29.5 bits (65), Expect = 4.7
 Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 18/38 (47%)

Query: 989  KQAERVEPFKLRDNLKPEGEFEGRPKDDYGPKVGDRAP 1026
            KQA +    KL+ +LK            Y     D AP
Sbjct: 19   KQALK----KLQASLKL-----------YAD---DSAP 38


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.6 bits (71), Expect = 2.2
 Identities = 47/290 (16%), Positives = 81/290 (27%), Gaps = 104/290 (35%)

Query: 231 RPKAVKPQDNLKP-EGEFERPSQPLVPLKG-ERAEIKRYEDH---KITGGEFTGI----T 281
            P  +  +D+L+  EG    PS P++ +    + +++ Y +     +  G+   I     
Sbjct: 320 PPSIL--EDSLENNEGV---PS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG 373

Query: 282 TQQVEFTGELTERPP--LIRRNTWTKLEGEFTSETTSQTEFKRFDSTQRTEIVKRRSDNL 339
            + +  +G     PP  L   N    L          Q+   R   ++R      R    
Sbjct: 374 AKNLVVSG-----PPQSLYGLNLT--LRKAKAPSGLDQS---RIPFSERKLKFSNR---- 419

Query: 340 TVLPRNKDDHPEKWKV---------KPEKPKKHQDNLRPDGGKFSSE--------TSSSE 382
             LP           V          P     ++D L  +   F+++        T    
Sbjct: 420 -FLP-----------VASPFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTFDGS 466

Query: 383 TFQAHQIIKKEEIRRREDNLVQEGEMIFVTSAHEEFTEKTPERVKPQRRRTWTKQDGEIY 442
             +         I  R   +V   + I                        W        
Sbjct: 467 DLRVL----SGSISER---IV---DCIIRLPVK------------------WETTTQ--- 495

Query: 443 FQTTSATEFTEHSTTDL-----RQAQ---VRHVDNLKTGGTFEGKPKDDY 484
           F+ T   +F     + L     R      VR +      GT +  P DDY
Sbjct: 496 FKATHILDFGPGGASGLGVLTHRNKDGTGVRVI----VAGTLDINPDDDY 541


>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
           {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
           1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
           1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
           2ga2_A* 2oaz_A*
          Length = 478

 Score = 30.7 bits (69), Expect = 3.7
 Identities = 28/157 (17%), Positives = 50/157 (31%), Gaps = 20/157 (12%)

Query: 485 MPVTAERPKQQKPKDNLRPEGDFERPTKVTPEKGERPKAIKPKDNLKPEGEFERPVKEPL 544
           M    E        +      D E     T E+  + K  K K +  P    E+   +  
Sbjct: 1   MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60

Query: 545 GPADRAPIIKHPDNLKLEGDFED---------------KPRPKAPERGERA---PIRKPK 586
           G +      +   +   + + ++               K + K  +RG +    P   P 
Sbjct: 61  GASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPI 120

Query: 587 DNLYPEGDFERPEHQEYKKGE--RPTAYKPHDNLKPE 621
            +LYP G F + +  EY   +  R  A++     K  
Sbjct: 121 CDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKKA 157


>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
           alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
           secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
           pneumoniae} PDB: 2xqx_A
          Length = 937

 Score = 29.5 bits (65), Expect = 8.2
 Identities = 17/205 (8%), Positives = 42/205 (20%), Gaps = 4/205 (1%)

Query: 599 EHQEYKKGERPTAYKPHDNLKPE---GEFERPIKEKPKQAERVEPFKVRDNLKTEGEFEG 655
            H  +        ++  +   PE      E    E        +     ++ +     + 
Sbjct: 6   HHHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKA 65

Query: 656 RPKDDYGPKVGDRAPVKKPQDNLYPEGEFERPEYPEFQKAERPKAF-KPHDNLKPEGDFE 714
                        +      +        +  E      AE P A  KP  + + E   E
Sbjct: 66  EGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPE 125

Query: 715 RPVKEKPKQGERVEPIKVRDNLKPEGEFEGRPKDDYGPKIGDRAPVKKPQDNLYPEGEFE 774
              +    +         ++      +   +       K      + K +     +    
Sbjct: 126 ATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAIN 185

Query: 775 RPEYPEFQKAERPKAFKPHDNLKPE 799
           R       +       +        
Sbjct: 186 RGSVVLASRRTGHLVNEKASKEAKV 210


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,394,797
Number of extensions: 1313250
Number of successful extensions: 1323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1318
Number of HSP's successfully gapped: 35
Length of query: 1301
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1196
Effective length of database: 3,770,088
Effective search space: 4509025248
Effective search space used: 4509025248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.8 bits)