RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9511
         (1301 letters)



>d1nq7a_ a.123.1.1 (A:) Orphan nuclear receptor ROR-beta {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 244

 Score = 30.1 bits (67), Expect = 1.6
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 6/86 (6%)

Query: 400 DNLVQEGEMIFVTSAHEEFTEKTPERVKPQRRRTWTKQDGEIYFQTTSATEFTEHSTTDL 459
           D + Q      +  +H E  + T E +     +T T  +    +Q+ S     +     +
Sbjct: 6   DRIAQN-----IIKSHLETCQYTMEELHQLAWQTHT-YEEIKAYQSKSREALWQQCAIQI 59

Query: 460 RQAQVRHVDNLKTGGTFEGKPKDDYM 485
             A    V+  K    F    ++D +
Sbjct: 60  THAIQYVVEFAKRITGFMELCQNDQI 85


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0568    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,083,462
Number of extensions: 271316
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 3
Length of query: 1301
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1205
Effective length of database: 1,089,516
Effective search space: 1312866780
Effective search space used: 1312866780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (26.9 bits)