Query psy9513
Match_columns 1491
No_of_seqs 749 out of 5778
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 21:31:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0962|consensus 100.0 7E-110 1E-114 1015.6 134.3 1236 1-1322 1-1287(1294)
2 TIGR00606 rad50 rad50. This fa 100.0 2E-108 4E-113 1108.2 151.7 1245 3-1320 2-1301(1311)
3 COG1196 Smc Chromosome segrega 100.0 3.9E-58 8.4E-63 612.2 100.5 1093 2-1321 1-1155(1163)
4 TIGR02169 SMC_prok_A chromosom 100.0 1.9E-52 4.1E-57 579.9 102.0 659 4-752 2-707 (1164)
5 TIGR02168 SMC_prok_B chromosom 100.0 3.1E-46 6.7E-51 520.4 107.9 169 4-218 2-182 (1179)
6 PRK02224 chromosome segregatio 100.0 9.4E-45 2E-49 481.0 93.3 193 558-757 311-506 (880)
7 KOG0996|consensus 100.0 2.7E-43 5.8E-48 418.7 87.0 281 419-715 450-758 (1293)
8 PRK01156 chromosome segregatio 100.0 3E-43 6.5E-48 465.4 97.7 184 2-232 1-186 (895)
9 PRK03918 chromosome segregatio 100.0 1E-42 2.2E-47 463.6 100.9 256 2-311 1-258 (880)
10 KOG0962|consensus 100.0 9E-44 1.9E-48 436.4 77.9 1093 35-1252 62-1281(1294)
11 COG0419 SbcC ATPase involved i 100.0 2.3E-40 5E-45 433.2 96.0 192 2-236 1-195 (908)
12 KOG0964|consensus 100.0 6.1E-40 1.3E-44 380.9 78.5 597 2-715 1-659 (1200)
13 KOG0018|consensus 100.0 2.3E-39 4.9E-44 383.2 82.2 709 1-839 1-755 (1141)
14 KOG0933|consensus 100.0 8E-39 1.7E-43 373.9 82.8 642 2-749 1-707 (1174)
15 TIGR00618 sbcc exonuclease Sbc 100.0 1.1E-33 2.4E-38 376.2 107.5 203 2-239 1-207 (1042)
16 PRK10246 exonuclease subunit S 100.0 1.2E-32 2.6E-37 362.3 105.4 203 2-238 1-210 (1047)
17 TIGR00606 rad50 rad50. This fa 100.0 9.2E-32 2E-36 364.2 98.6 506 716-1246 748-1291(1311)
18 PF13514 AAA_27: AAA domain 100.0 2.2E-23 4.7E-28 279.3 105.4 126 1122-1297 963-1099(1111)
19 PRK04863 mukB cell division pr 100.0 3.9E-20 8.4E-25 243.7 100.1 186 4-215 7-215 (1486)
20 COG4717 Uncharacterized conser 100.0 3.3E-20 7.1E-25 216.6 85.3 122 1122-1294 841-971 (984)
21 KOG0250|consensus 99.9 2.3E-18 5E-23 208.6 71.2 328 3-386 41-382 (1074)
22 PHA02562 46 endonuclease subun 99.9 2.5E-22 5.4E-27 254.2 36.7 170 1-215 1-174 (562)
23 KOG0161|consensus 99.9 2.5E-14 5.3E-19 188.3 105.1 247 318-569 1060-1313(1930)
24 KOG0161|consensus 99.9 6.2E-13 1.3E-17 175.4 110.2 213 319-548 928-1143(1930)
25 PF12128 DUF3584: Protein of u 99.9 1.8E-13 3.9E-18 184.2 100.8 43 14-58 5-47 (1201)
26 KOG0979|consensus 99.9 2.8E-15 6E-20 179.2 72.3 332 4-400 22-356 (1072)
27 TIGR02168 SMC_prok_B chromosom 99.9 1.4E-14 3.1E-19 202.7 87.9 130 1134-1319 1035-1176(1179)
28 TIGR02680 conserved hypothetic 99.9 6E-13 1.3E-17 179.7 97.4 48 5-55 5-53 (1353)
29 TIGR03185 DNA_S_dndD DNA sulfu 99.8 9.9E-18 2.1E-22 212.0 45.3 271 2-313 1-291 (650)
30 COG1196 Smc Chromosome segrega 99.8 5.9E-13 1.3E-17 179.5 89.6 39 1195-1233 1098-1136(1163)
31 TIGR02169 SMC_prok_A chromosom 99.8 1.2E-11 2.7E-16 172.4 93.8 145 1119-1320 1006-1162(1164)
32 KOG4674|consensus 99.8 2.6E-09 5.7E-14 138.8 107.6 52 595-646 440-491 (1822)
33 COG1126 GlnQ ABC-type polar am 99.8 1.3E-18 2.8E-23 174.1 9.5 89 1218-1310 78-212 (240)
34 PRK04863 mukB cell division pr 99.7 5.5E-09 1.2E-13 139.4 97.7 56 319-374 434-489 (1486)
35 COG1116 TauB ABC-type nitrate/ 99.7 9.5E-18 2.1E-22 174.5 9.6 132 1173-1326 41-223 (248)
36 COG1135 AbcC ABC-type metal io 99.7 5.7E-17 1.2E-21 171.4 8.6 126 1171-1310 42-218 (339)
37 COG1127 Ttg2A ABC-type transpo 99.7 6.7E-17 1.5E-21 164.7 8.3 125 1172-1310 45-222 (263)
38 COG1136 SalX ABC-type antimicr 99.7 1.3E-16 2.7E-21 166.8 9.4 127 1171-1311 41-219 (226)
39 KOG0996|consensus 99.7 1.8E-08 3.9E-13 123.5 79.6 177 4-225 86-284 (1293)
40 PF10174 Cast: RIM-binding pro 99.7 2.2E-08 4.7E-13 124.1 81.5 220 600-839 369-599 (775)
41 COG1125 OpuBA ABC-type proline 99.6 1.7E-16 3.8E-21 162.0 7.6 123 1171-1310 37-212 (309)
42 KOG4674|consensus 99.6 2.5E-07 5.4E-12 121.0 113.7 289 283-578 390-710 (1822)
43 COG4555 NatA ABC-type Na+ tran 99.6 2.9E-15 6.2E-20 147.6 9.6 126 1166-1310 34-209 (245)
44 COG4175 ProV ABC-type proline/ 99.6 6.3E-16 1.4E-20 162.8 5.0 126 1172-1310 65-241 (386)
45 TIGR00634 recN DNA repair prot 99.6 3E-13 6.6E-18 168.2 29.6 48 4-54 2-49 (563)
46 COG1118 CysA ABC-type sulfate/ 99.6 1E-15 2.2E-20 161.4 5.8 124 1171-1310 38-214 (345)
47 PRK10869 recombination and rep 99.6 4E-13 8.7E-18 164.7 28.3 47 4-53 2-48 (553)
48 PRK02224 chromosome segregatio 99.6 1.6E-08 3.5E-13 135.4 74.4 191 2-238 1-192 (880)
49 COG2884 FtsE Predicted ATPase 99.6 6.5E-15 1.4E-19 143.9 8.4 126 1171-1310 38-213 (223)
50 KOG0964|consensus 99.6 3.5E-07 7.5E-12 109.9 78.5 51 1254-1309 1116-1174(1200)
51 COG1120 FepC ABC-type cobalami 99.5 4E-15 8.8E-20 158.9 6.0 121 1173-1310 40-215 (258)
52 COG3638 ABC-type phosphate/pho 99.5 2E-14 4.2E-19 146.5 8.6 126 1171-1310 40-224 (258)
53 COG3842 PotA ABC-type spermidi 99.5 6.4E-15 1.4E-19 164.9 5.5 144 1171-1340 41-236 (352)
54 COG4181 Predicted ABC-type tra 99.5 1.6E-14 3.6E-19 137.9 6.8 125 1172-1310 47-222 (228)
55 PF01576 Myosin_tail_1: Myosin 99.5 1.7E-15 3.7E-20 194.1 0.0 699 328-1065 12-733 (859)
56 COG3839 MalK ABC-type sugar tr 99.5 1.9E-14 4E-19 160.3 8.0 141 1151-1310 12-210 (338)
57 COG4525 TauB ABC-type taurine 99.5 4E-14 8.7E-19 138.4 8.4 120 1173-1314 43-213 (259)
58 COG4598 HisP ABC-type histidin 99.5 2.6E-14 5.7E-19 137.3 6.8 89 1218-1310 94-228 (256)
59 COG1126 GlnQ ABC-type polar am 99.5 5.9E-14 1.3E-18 141.1 6.7 98 7-110 3-107 (240)
60 COG1137 YhbG ABC-type (unclass 99.5 3.6E-13 7.9E-18 132.8 11.6 128 1166-1310 36-215 (243)
61 COG1131 CcmA ABC-type multidru 99.4 2.1E-13 4.5E-18 154.2 10.3 89 1218-1310 79-213 (293)
62 TIGR02314 ABC_MetN D-methionin 99.4 2E-13 4.4E-18 157.0 9.8 126 1171-1310 41-217 (343)
63 COG1120 FepC ABC-type cobalami 99.4 7.9E-14 1.7E-18 149.1 5.8 94 6-105 2-101 (258)
64 COG1117 PstB ABC-type phosphat 99.4 1.1E-13 2.4E-18 138.2 6.2 110 1185-1310 67-224 (253)
65 COG1125 OpuBA ABC-type proline 99.4 1.7E-13 3.7E-18 140.4 7.4 94 7-106 2-101 (309)
66 COG1124 DppF ABC-type dipeptid 99.4 2E-13 4.4E-18 140.6 8.0 124 1171-1310 43-218 (252)
67 TIGR01186 proV glycine betaine 99.4 4E-13 8.7E-18 155.3 11.0 126 1172-1310 30-206 (363)
68 COG0411 LivG ABC-type branched 99.4 1E-13 2.2E-18 143.0 4.7 97 6-108 4-107 (250)
69 PF10174 Cast: RIM-binding pro 99.4 5.2E-06 1.1E-10 103.4 77.1 281 343-649 109-397 (775)
70 COG1137 YhbG ABC-type (unclass 99.4 6.5E-14 1.4E-18 138.0 2.6 97 6-108 4-107 (243)
71 COG4152 ABC-type uncharacteriz 99.4 2.6E-13 5.6E-18 138.1 6.9 89 1218-1310 73-206 (300)
72 PRK03918 chromosome segregatio 99.4 2.2E-06 4.8E-11 115.3 75.6 59 1249-1312 804-871 (880)
73 PHA02562 46 endonuclease subun 99.4 8.5E-10 1.8E-14 140.1 40.4 62 1244-1310 473-552 (562)
74 PRK13537 nodulation ABC transp 99.4 6.3E-13 1.4E-17 152.2 10.5 121 1172-1310 44-214 (306)
75 COG0444 DppD ABC-type dipeptid 99.4 1.4E-12 3E-17 141.4 11.9 111 1187-1310 67-230 (316)
76 cd03230 ABC_DR_subfamily_A Thi 99.4 7.1E-13 1.5E-17 139.0 9.5 89 1218-1310 74-171 (173)
77 COG0410 LivF ABC-type branched 99.4 6.1E-13 1.3E-17 136.2 7.5 96 6-107 3-105 (237)
78 PRK11650 ugpC glycerol-3-phosp 99.4 9.8E-13 2.1E-17 152.9 10.2 121 1171-1310 40-211 (356)
79 COG1116 TauB ABC-type nitrate/ 99.4 4.5E-13 9.9E-18 139.9 6.2 91 6-107 3-99 (248)
80 COG4674 Uncharacterized ABC-ty 99.4 4.7E-13 1E-17 131.2 5.8 96 5-106 4-107 (249)
81 COG3840 ThiQ ABC-type thiamine 99.4 5.4E-13 1.2E-17 129.3 6.1 120 1172-1310 36-206 (231)
82 TIGR03258 PhnT 2-aminoethylpho 99.4 1.3E-12 2.9E-17 151.7 10.3 121 1171-1310 41-215 (362)
83 COG1121 ZnuC ABC-type Mn/Zn tr 99.4 9E-13 2E-17 140.1 7.6 63 1244-1310 144-215 (254)
84 PRK13536 nodulation factor exp 99.4 1.7E-12 3.7E-17 149.9 10.6 121 1172-1310 78-248 (340)
85 TIGR00960 3a0501s02 Type II (G 99.4 1.8E-12 3.9E-17 141.9 10.2 125 1172-1310 40-214 (216)
86 COG3839 MalK ABC-type sugar tr 99.4 6.9E-13 1.5E-17 147.9 6.8 95 6-108 3-103 (338)
87 PRK11432 fbpC ferric transport 99.4 1.8E-12 4E-17 150.1 10.4 121 1171-1310 42-213 (351)
88 COG3842 PotA ABC-type spermidi 99.4 8.2E-13 1.8E-17 148.1 7.1 93 6-106 5-103 (352)
89 TIGR03265 PhnT2 putative 2-ami 99.4 1.9E-12 4.1E-17 150.4 10.4 121 1171-1310 40-211 (353)
90 TIGR01188 drrA daunorubicin re 99.3 2E-12 4.3E-17 148.5 10.2 121 1172-1310 30-200 (302)
91 COG1122 CbiO ABC-type cobalt t 99.3 1.1E-12 2.4E-17 141.0 7.5 63 1244-1310 143-215 (235)
92 TIGR03185 DNA_S_dndD DNA sulfu 99.3 8.1E-08 1.7E-12 122.3 52.8 380 850-1296 205-620 (650)
93 PRK09452 potA putrescine/sperm 99.3 2.2E-12 4.9E-17 150.4 10.4 121 1171-1310 50-221 (375)
94 PRK11607 potG putrescine trans 99.3 2.4E-12 5.3E-17 150.4 10.4 121 1171-1310 55-226 (377)
95 cd03215 ABC_Carb_Monos_II This 99.3 2.8E-12 6.1E-17 135.7 9.9 123 1172-1310 37-180 (182)
96 COG3638 ABC-type phosphate/pho 99.3 1.7E-12 3.7E-17 132.5 7.8 96 6-107 3-108 (258)
97 cd03229 ABC_Class3 This class 99.3 2E-12 4.3E-17 136.3 8.6 124 1172-1310 37-177 (178)
98 COG4161 ArtP ABC-type arginine 99.3 1.8E-12 3.9E-17 122.3 7.1 89 1218-1310 83-217 (242)
99 TIGR03415 ABC_choXWV_ATP choli 99.3 3.5E-12 7.5E-17 148.1 10.7 126 1172-1310 61-241 (382)
100 cd03246 ABCC_Protease_Secretio 99.3 2.7E-12 5.8E-17 134.6 8.8 119 1172-1310 39-171 (173)
101 COG1127 Ttg2A ABC-type transpo 99.3 1.6E-12 3.4E-17 133.2 6.4 100 6-111 8-116 (263)
102 cd03259 ABC_Carb_Solutes_like 99.3 5.1E-12 1.1E-16 138.0 10.5 89 1218-1310 73-207 (213)
103 TIGR02673 FtsE cell division A 99.3 4.9E-12 1.1E-16 138.4 10.3 125 1172-1310 39-213 (214)
104 cd03268 ABC_BcrA_bacitracin_re 99.3 5.4E-12 1.2E-16 137.3 10.4 89 1218-1310 73-202 (208)
105 TIGR01288 nodI ATP-binding ABC 99.3 4.9E-12 1.1E-16 145.4 10.5 121 1172-1310 41-211 (303)
106 cd03261 ABC_Org_Solvent_Resist 99.3 5.5E-12 1.2E-16 140.0 10.2 125 1172-1310 37-213 (235)
107 KOG0933|consensus 99.3 1.6E-05 3.4E-10 96.7 80.1 106 1137-1290 1032-1145(1174)
108 COG4148 ModC ABC-type molybdat 99.3 2.2E-12 4.9E-17 133.8 6.3 127 1171-1310 34-205 (352)
109 COG1123 ATPase components of v 99.3 4.7E-12 1E-16 148.2 9.4 111 1187-1310 70-231 (539)
110 PRK10851 sulfate/thiosulfate t 99.3 6.1E-12 1.3E-16 146.2 10.4 121 1171-1310 38-213 (353)
111 cd03292 ABC_FtsE_transporter F 99.3 7.2E-12 1.6E-16 137.2 10.4 125 1172-1310 38-212 (214)
112 PRK09473 oppD oligopeptide tra 99.3 6.8E-12 1.5E-16 144.8 10.6 126 1172-1310 53-238 (330)
113 cd03266 ABC_NatA_sodium_export 99.3 7.7E-12 1.7E-16 137.3 10.5 121 1172-1310 42-212 (218)
114 PRK11000 maltose/maltodextrin 99.3 6E-12 1.3E-16 147.7 10.2 120 1172-1310 40-210 (369)
115 PRK10070 glycine betaine trans 99.3 6.9E-12 1.5E-16 146.9 10.6 126 1172-1310 65-241 (400)
116 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.3 7E-12 1.5E-16 137.6 9.9 125 1172-1310 41-216 (218)
117 TIGR01187 potA spermidine/putr 99.3 7.8E-12 1.7E-16 144.6 10.4 89 1218-1310 43-177 (325)
118 cd03213 ABCG_EPDR ABCG transpo 99.3 7.4E-12 1.6E-16 133.8 9.4 89 1218-1310 83-188 (194)
119 cd03264 ABC_drug_resistance_li 99.3 9.9E-12 2.1E-16 135.5 10.4 89 1218-1310 73-205 (211)
120 PRK11153 metN DL-methionine tr 99.3 8.9E-12 1.9E-16 145.0 10.6 125 1172-1310 42-217 (343)
121 cd03218 ABC_YhbG The ABC trans 99.3 9.9E-12 2.2E-16 137.9 10.4 123 1172-1310 37-209 (232)
122 cd03293 ABC_NrtD_SsuB_transpor 99.3 1.1E-11 2.5E-16 135.9 10.7 89 1217-1309 73-207 (220)
123 PRK13651 cobalt transporter AT 99.3 7.4E-12 1.6E-16 142.9 9.3 63 1244-1310 170-241 (305)
124 cd03226 ABC_cobalt_CbiO_domain 99.3 1.2E-11 2.6E-16 134.1 10.5 89 1218-1310 72-202 (205)
125 cd03225 ABC_cobalt_CbiO_domain 99.3 1.1E-11 2.3E-16 135.4 10.2 122 1172-1310 38-210 (211)
126 PRK11022 dppD dipeptide transp 99.3 1.3E-11 2.9E-16 142.3 11.5 126 1172-1310 44-230 (326)
127 cd03265 ABC_DrrA DrrA is the A 99.3 1.1E-11 2.4E-16 136.0 10.3 121 1172-1310 37-208 (220)
128 cd03269 ABC_putative_ATPase Th 99.3 1.2E-11 2.6E-16 134.7 10.4 89 1218-1310 71-204 (210)
129 COG0411 LivG ABC-type branched 99.3 1.6E-11 3.6E-16 126.9 10.6 123 1172-1310 41-226 (250)
130 KOG0250|consensus 99.3 2.9E-05 6.3E-10 96.5 70.8 41 1255-1295 1009-1060(1074)
131 PRK10908 cell division protein 99.3 1.2E-11 2.6E-16 135.9 10.3 125 1172-1310 39-213 (222)
132 cd03262 ABC_HisP_GlnQ_permease 99.3 1.2E-11 2.6E-16 135.4 10.1 89 1218-1310 77-211 (213)
133 TIGR03522 GldA_ABC_ATP gliding 99.3 1.1E-11 2.5E-16 142.0 10.4 121 1172-1310 39-208 (301)
134 PRK11144 modC molybdate transp 99.3 1E-11 2.2E-16 145.1 10.1 126 1172-1310 35-205 (352)
135 cd03223 ABCD_peroxisomal_ALDP 99.3 7.8E-12 1.7E-16 129.7 8.0 89 1217-1311 64-164 (166)
136 cd03240 ABC_Rad50 The catalyti 99.3 2.2E-12 4.8E-17 138.2 4.0 92 4-120 1-92 (204)
137 PRK11247 ssuB aliphatic sulfon 99.3 1.1E-11 2.5E-16 138.0 9.7 89 1218-1310 82-210 (257)
138 cd03228 ABCC_MRP_Like The MRP 99.3 1.1E-11 2.5E-16 129.6 9.2 119 1172-1310 39-170 (171)
139 cd03298 ABC_ThiQ_thiamine_tran 99.3 1.1E-11 2.3E-16 135.3 9.3 89 1218-1310 71-205 (211)
140 cd03258 ABC_MetN_methionine_tr 99.3 1.3E-11 2.8E-16 136.9 10.2 125 1172-1310 42-217 (233)
141 PRK15079 oligopeptide ABC tran 99.3 1.4E-11 3E-16 142.1 10.6 126 1171-1310 57-238 (331)
142 cd03294 ABC_Pro_Gly_Bertaine T 99.3 1.4E-11 3.1E-16 139.0 10.5 126 1172-1310 61-237 (269)
143 COG4152 ABC-type uncharacteriz 99.3 6.7E-12 1.5E-16 128.0 6.8 90 6-105 2-97 (300)
144 cd03297 ABC_ModC_molybdenum_tr 99.3 1.5E-11 3.2E-16 134.4 10.2 89 1218-1310 76-208 (214)
145 cd03219 ABC_Mj1267_LivG_branch 99.3 1.6E-11 3.5E-16 136.6 10.4 123 1172-1310 37-219 (236)
146 cd03301 ABC_MalK_N The N-termi 99.3 1.8E-11 3.9E-16 133.8 10.6 90 1217-1310 72-207 (213)
147 COG4604 CeuD ABC-type enteroch 99.3 3.2E-12 6.8E-17 125.7 4.0 92 7-104 2-99 (252)
148 cd03217 ABC_FeS_Assembly ABC-t 99.3 1.3E-11 2.8E-16 132.8 9.2 89 1218-1310 78-181 (200)
149 COG1118 CysA ABC-type sulfate/ 99.3 5.2E-12 1.1E-16 133.8 5.8 95 7-107 3-104 (345)
150 cd03224 ABC_TM1139_LivF_branch 99.3 1.6E-11 3.4E-16 135.3 10.0 123 1172-1310 37-208 (222)
151 TIGR02142 modC_ABC molybdenum 99.3 1.5E-11 3.3E-16 144.0 10.3 126 1172-1310 34-208 (354)
152 cd03232 ABC_PDR_domain2 The pl 99.2 1.7E-11 3.7E-16 130.9 9.7 88 1218-1309 80-184 (192)
153 PRK11264 putative amino-acid A 99.2 1.8E-11 4E-16 137.4 10.4 89 1218-1310 86-220 (250)
154 PRK10619 histidine/lysine/argi 99.2 1.9E-11 4.1E-16 137.6 10.5 89 1218-1310 93-228 (257)
155 cd03296 ABC_CysA_sulfate_impor 99.2 1.7E-11 3.7E-16 136.4 9.7 90 1217-1310 74-213 (239)
156 COG1117 PstB ABC-type phosphat 99.2 1E-11 2.3E-16 124.2 6.6 104 3-108 4-115 (253)
157 PRK11308 dppF dipeptide transp 99.2 2.3E-11 5E-16 140.2 10.6 125 1172-1310 52-231 (327)
158 PRK09493 glnQ glutamine ABC tr 99.2 2.4E-11 5.2E-16 135.4 10.3 124 1172-1310 38-212 (240)
159 COG1121 ZnuC ABC-type Mn/Zn tr 99.2 1E-11 2.2E-16 132.2 6.9 91 6-105 4-102 (254)
160 TIGR02211 LolD_lipo_ex lipopro 99.2 2.4E-11 5.1E-16 133.7 10.1 125 1172-1310 42-217 (221)
161 PRK13647 cbiO cobalt transport 99.2 2.7E-11 5.8E-16 137.1 10.6 122 1172-1310 42-214 (274)
162 PRK01156 chromosome segregatio 99.2 6.4E-05 1.4E-09 100.9 73.0 78 1195-1317 802-891 (895)
163 PRK09536 btuD corrinoid ABC tr 99.2 1.9E-11 4E-16 143.4 9.5 122 1172-1310 40-215 (402)
164 TIGR02315 ABC_phnC phosphonate 99.2 2.1E-11 4.6E-16 136.4 9.6 125 1172-1310 39-222 (243)
165 PF01576 Myosin_tail_1: Myosin 99.2 1.2E-12 2.7E-17 168.1 -0.5 48 595-642 321-368 (859)
166 cd03256 ABC_PhnC_transporter A 99.2 2.5E-11 5.4E-16 135.7 10.0 125 1172-1310 38-221 (241)
167 cd03247 ABCC_cytochrome_bd The 99.2 1.9E-11 4.1E-16 129.0 8.5 87 1218-1310 76-172 (178)
168 PF12128 DUF3584: Protein of u 99.2 0.00013 2.9E-09 99.4 87.3 13 1115-1127 991-1003(1201)
169 PRK13631 cbiO cobalt transport 99.2 2.2E-11 4.7E-16 140.0 9.3 63 1244-1310 181-252 (320)
170 PRK11248 tauB taurine transpor 99.2 4E-11 8.7E-16 134.0 11.3 88 1218-1309 71-204 (255)
171 COG2884 FtsE Predicted ATPase 99.2 1.1E-11 2.4E-16 121.7 5.8 98 7-110 2-109 (223)
172 PRK11614 livF leucine/isoleuci 99.2 2.9E-11 6.2E-16 134.5 10.0 123 1172-1310 42-213 (237)
173 TIGR01277 thiQ thiamine ABC tr 99.2 3.1E-11 6.8E-16 131.6 10.1 120 1172-1310 35-205 (213)
174 TIGR03410 urea_trans_UrtE urea 99.2 3.2E-11 6.9E-16 133.6 10.2 123 1172-1310 37-208 (230)
175 cd03263 ABC_subfamily_A The AB 99.2 3.5E-11 7.5E-16 132.3 10.4 121 1172-1310 39-208 (220)
176 PRK11124 artP arginine transpo 99.2 3.3E-11 7.1E-16 134.5 10.3 89 1218-1310 83-217 (242)
177 TIGR03740 galliderm_ABC gallid 99.2 3.7E-11 8E-16 132.2 10.5 89 1218-1310 71-200 (223)
178 PRK11831 putative ABC transpor 99.2 3.4E-11 7.5E-16 136.1 10.5 125 1172-1310 44-220 (269)
179 PRK13643 cbiO cobalt transport 99.2 3.5E-11 7.6E-16 137.0 10.5 63 1244-1310 149-220 (288)
180 COG1123 ATPase components of v 99.2 2.6E-11 5.5E-16 142.1 9.4 63 1244-1310 434-506 (539)
181 PRK13637 cbiO cobalt transport 99.2 3.8E-11 8.2E-16 136.7 10.5 124 1172-1310 44-221 (287)
182 COG4172 ABC-type uncharacteriz 99.2 2.5E-11 5.4E-16 132.4 8.3 112 1185-1310 341-503 (534)
183 TIGR03411 urea_trans_UrtD urea 99.2 3.9E-11 8.5E-16 134.0 10.3 123 1172-1310 39-218 (242)
184 PRK13641 cbiO cobalt transport 99.2 4.2E-11 9.2E-16 136.5 10.7 124 1172-1310 44-221 (287)
185 PRK10584 putative ABC transpor 99.2 4.1E-11 8.9E-16 132.5 10.3 125 1172-1310 47-222 (228)
186 PRK13634 cbiO cobalt transport 99.2 4.4E-11 9.5E-16 136.4 10.7 124 1172-1310 44-222 (290)
187 cd03235 ABC_Metallic_Cations A 99.2 3.6E-11 7.9E-16 131.3 9.7 63 1244-1310 137-208 (213)
188 TIGR01184 ntrCD nitrate transp 99.2 4.2E-11 9.1E-16 132.0 10.2 87 1220-1310 57-191 (230)
189 PRK11629 lolD lipoprotein tran 99.2 4.5E-11 9.8E-16 132.4 10.4 125 1172-1310 46-221 (233)
190 PRK15093 antimicrobial peptide 99.2 5.8E-11 1.3E-15 137.7 11.7 63 1244-1310 163-235 (330)
191 COG1136 SalX ABC-type antimicr 99.2 1.9E-11 4.1E-16 128.2 6.8 94 7-106 2-109 (226)
192 cd03257 ABC_NikE_OppD_transpor 99.2 4.6E-11 1E-15 132.3 10.3 63 1244-1310 150-222 (228)
193 cd03295 ABC_OpuCA_Osmoprotecti 99.2 4.4E-11 9.6E-16 133.3 10.0 122 1172-1310 38-212 (242)
194 PRK09984 phosphonate/organopho 99.2 4.2E-11 9.2E-16 135.2 9.9 127 1172-1310 41-229 (262)
195 COG3845 ABC-type uncharacteriz 99.2 1.8E-11 3.9E-16 138.6 6.8 96 6-107 4-106 (501)
196 PRK11300 livG leucine/isoleuci 99.2 4.8E-11 1E-15 134.5 10.2 123 1172-1310 42-230 (255)
197 TIGR03005 ectoine_ehuA ectoine 99.2 5.2E-11 1.1E-15 133.7 10.3 89 1218-1310 88-223 (252)
198 PRK10895 lipopolysaccharide AB 99.2 4.6E-11 1E-15 133.2 9.8 123 1172-1310 40-213 (241)
199 TIGR03864 PQQ_ABC_ATP ABC tran 99.2 5.2E-11 1.1E-15 132.2 9.9 120 1172-1310 38-208 (236)
200 COG1131 CcmA ABC-type multidru 99.2 2.8E-11 6E-16 137.0 7.7 94 6-106 4-104 (293)
201 PRK10771 thiQ thiamine transpo 99.2 4.7E-11 1E-15 132.2 9.4 120 1172-1310 36-206 (232)
202 PRK13635 cbiO cobalt transport 99.2 5.1E-11 1.1E-15 135.1 9.8 121 1172-1310 44-216 (279)
203 PRK13646 cbiO cobalt transport 99.2 6E-11 1.3E-15 135.2 10.4 63 1244-1310 150-222 (286)
204 PRK11231 fecE iron-dicitrate t 99.2 5.2E-11 1.1E-15 133.8 9.7 122 1172-1310 39-214 (255)
205 cd03260 ABC_PstB_phosphate_tra 99.2 6.3E-11 1.4E-15 130.9 10.2 87 1218-1310 82-216 (227)
206 COG0410 LivF ABC-type branched 99.2 4.4E-11 9.5E-16 122.8 8.0 122 1173-1310 41-213 (237)
207 TIGR00634 recN DNA repair prot 99.2 1.4E-07 2.9E-12 118.0 40.8 63 1244-1311 445-519 (563)
208 PRK13650 cbiO cobalt transport 99.2 5.8E-11 1.3E-15 134.8 9.8 121 1172-1310 44-216 (279)
209 PRK14268 phosphate ABC transpo 99.2 8.6E-11 1.9E-15 132.2 10.3 63 1244-1310 159-229 (258)
210 PRK14250 phosphate ABC transpo 99.2 7.9E-11 1.7E-15 131.0 9.8 121 1172-1310 40-208 (241)
211 PRK13644 cbiO cobalt transport 99.2 8E-11 1.7E-15 133.2 10.0 122 1172-1310 39-211 (274)
212 cd03300 ABC_PotA_N PotA is an 99.2 9.4E-11 2E-15 129.7 10.3 90 1217-1310 72-207 (232)
213 PRK15439 autoinducer 2 ABC tra 99.2 5.5E-11 1.2E-15 147.5 9.3 123 1172-1310 48-216 (510)
214 PRK13548 hmuV hemin importer A 99.2 7.9E-11 1.7E-15 132.2 9.7 122 1172-1310 39-217 (258)
215 cd03216 ABC_Carb_Monos_I This 99.2 7.3E-11 1.6E-15 122.0 8.7 74 1218-1310 76-158 (163)
216 PRK13543 cytochrome c biogenes 99.2 9E-11 1.9E-15 127.9 9.8 88 1218-1309 83-212 (214)
217 cd03299 ABC_ModC_like Archeal 99.2 1E-10 2.2E-15 129.6 10.2 120 1172-1310 36-206 (235)
218 cd03237 ABC_RNaseL_inhibitor_d 99.2 1.2E-10 2.6E-15 128.9 10.7 63 1244-1310 120-192 (246)
219 PRK14247 phosphate ABC transpo 99.2 1E-10 2.2E-15 131.3 10.3 89 1218-1310 83-221 (250)
220 TIGR00968 3a0106s01 sulfate AB 99.1 1.1E-10 2.5E-15 129.4 10.3 90 1217-1310 72-207 (237)
221 COG4559 ABC-type hemin transpo 99.1 5E-11 1.1E-15 119.1 6.6 95 7-107 2-102 (259)
222 TIGR02769 nickel_nikE nickel i 99.1 1.1E-10 2.5E-15 131.7 10.5 63 1244-1310 155-227 (265)
223 cd03267 ABC_NatA_like Similar 99.1 1.2E-10 2.6E-15 128.9 10.4 63 1244-1310 158-230 (236)
224 PRK10253 iron-enterobactin tra 99.1 8.8E-11 1.9E-15 132.6 9.5 122 1172-1310 44-220 (265)
225 TIGR02324 CP_lyasePhnL phospho 99.1 9.6E-11 2.1E-15 129.1 9.5 86 1218-1307 91-222 (224)
226 cd03234 ABCG_White The White s 99.1 1.1E-10 2.5E-15 128.5 10.0 90 1217-1310 81-220 (226)
227 PRK13536 nodulation factor exp 99.1 5.4E-11 1.2E-15 137.6 7.7 92 5-103 40-137 (340)
228 PRK13636 cbiO cobalt transport 99.1 1.3E-10 2.8E-15 132.3 10.5 63 1244-1310 146-218 (283)
229 COG1135 AbcC ABC-type metal io 99.1 4.7E-11 1E-15 127.1 6.4 96 7-108 2-111 (339)
230 PRK10575 iron-hydroxamate tran 99.1 1.1E-10 2.5E-15 131.7 10.1 89 1218-1310 86-224 (265)
231 cd03222 ABC_RNaseL_inhibitor T 99.1 1.1E-10 2.3E-15 120.9 9.0 81 1218-1314 62-152 (177)
232 PRK14267 phosphate ABC transpo 99.1 1.2E-10 2.6E-15 130.9 10.2 89 1218-1310 86-224 (253)
233 cd03289 ABCC_CFTR2 The CFTR su 99.1 8.7E-11 1.9E-15 131.6 8.9 87 1218-1310 78-212 (275)
234 COG1129 MglA ABC-type sugar tr 99.1 5.4E-11 1.2E-15 138.5 7.3 94 5-104 7-107 (500)
235 PRK13652 cbiO cobalt transport 99.1 1.3E-10 2.8E-15 132.0 10.2 122 1172-1310 41-214 (277)
236 PRK13639 cbiO cobalt transport 99.1 1.5E-10 3.2E-15 131.3 10.7 124 1172-1310 39-213 (275)
237 TIGR03608 L_ocin_972_ABC putat 99.1 1.2E-10 2.6E-15 126.7 9.5 122 1172-1307 35-206 (206)
238 COG4988 CydD ABC-type transpor 99.1 4.1E-11 8.9E-16 139.5 6.1 62 1244-1310 461-530 (559)
239 PRK14273 phosphate ABC transpo 99.1 1.4E-10 3E-15 130.5 10.2 63 1244-1310 155-225 (254)
240 TIGR02770 nickel_nikD nickel i 99.1 1.6E-10 3.4E-15 127.7 10.4 63 1244-1310 130-202 (230)
241 TIGR00972 3a0107s01c2 phosphat 99.1 1.4E-10 2.9E-15 129.9 10.1 63 1244-1310 149-219 (247)
242 PRK11432 fbpC ferric transport 99.1 7.4E-11 1.6E-15 136.8 8.0 98 1-106 1-104 (351)
243 PRK03695 vitamin B12-transport 99.1 1.2E-10 2.5E-15 130.0 9.3 89 1218-1310 70-209 (248)
244 PRK15112 antimicrobial peptide 99.1 1.6E-10 3.4E-15 130.5 10.4 63 1244-1310 154-226 (267)
245 COG1129 MglA ABC-type sugar tr 99.1 1.1E-10 2.3E-15 136.0 8.9 122 1173-1310 46-221 (500)
246 PRK13649 cbiO cobalt transport 99.1 1.7E-10 3.6E-15 131.6 10.5 63 1244-1310 150-221 (280)
247 TIGR03873 F420-0_ABC_ATP propo 99.1 1.5E-10 3.1E-15 130.3 9.8 122 1172-1310 38-213 (256)
248 TIGR01978 sufC FeS assembly AT 99.1 1.5E-10 3.3E-15 129.6 9.9 63 1244-1310 149-221 (243)
249 PRK14242 phosphate transporter 99.1 1.6E-10 3.5E-15 129.9 10.2 63 1244-1310 154-224 (253)
250 PRK13638 cbiO cobalt transport 99.1 1.7E-10 3.7E-15 130.7 10.4 63 1244-1310 141-212 (271)
251 PRK14079 recF recombination pr 99.1 6.3E-10 1.4E-14 129.4 15.2 52 2-56 1-52 (349)
252 PRK14256 phosphate ABC transpo 99.1 1.7E-10 3.6E-15 129.6 10.1 89 1218-1310 86-223 (252)
253 PRK14239 phosphate transporter 99.1 1.8E-10 3.9E-15 129.6 10.3 63 1244-1310 153-223 (252)
254 PRK14269 phosphate ABC transpo 99.1 1.8E-10 3.8E-15 128.8 10.0 63 1244-1310 147-217 (246)
255 PRK10762 D-ribose transporter 99.1 1.3E-10 2.8E-15 144.1 9.9 123 1172-1310 41-217 (501)
256 PRK13537 nodulation ABC transp 99.1 8E-11 1.7E-15 134.9 7.3 95 1-103 3-103 (306)
257 PRK14245 phosphate ABC transpo 99.1 1.9E-10 4.1E-15 129.0 10.2 63 1244-1310 151-221 (250)
258 PRK13645 cbiO cobalt transport 99.1 2.1E-10 4.5E-15 131.3 10.7 63 1244-1310 155-227 (289)
259 PRK13549 xylose transporter AT 99.1 1.2E-10 2.5E-15 144.8 9.3 123 1172-1310 42-219 (506)
260 TIGR02982 heterocyst_DevA ABC 99.1 2.2E-10 4.7E-15 125.7 10.4 88 1218-1310 83-217 (220)
261 PRK11650 ugpC glycerol-3-phosp 99.1 9.3E-11 2E-15 136.5 7.9 93 6-106 3-102 (356)
262 PRK13640 cbiO cobalt transport 99.1 1.8E-10 3.8E-15 131.1 9.9 121 1172-1310 44-219 (282)
263 PRK14270 phosphate ABC transpo 99.1 2E-10 4.3E-15 128.9 10.0 63 1244-1310 152-222 (251)
264 PRK10744 pstB phosphate transp 99.1 2E-10 4.4E-15 129.3 10.2 63 1244-1310 161-231 (260)
265 PRK13538 cytochrome c biogenes 99.1 1.4E-10 3.1E-15 125.4 8.5 86 1218-1307 75-202 (204)
266 cd03369 ABCC_NFT1 Domain 2 of 99.1 1.4E-10 3E-15 126.0 8.5 87 1218-1310 83-199 (207)
267 cd03261 ABC_Org_Solvent_Resist 99.1 9.8E-11 2.1E-15 130.0 7.5 93 7-105 1-102 (235)
268 cd03233 ABC_PDR_domain1 The pl 99.1 2.2E-10 4.8E-15 123.3 9.9 90 1217-1310 83-196 (202)
269 PRK14240 phosphate transporter 99.1 2.2E-10 4.8E-15 128.6 10.2 63 1244-1310 151-221 (250)
270 PRK10261 glutathione transport 99.1 1.7E-10 3.6E-15 146.1 10.2 89 1218-1310 105-245 (623)
271 PRK14246 phosphate ABC transpo 99.1 2.4E-10 5.2E-15 128.0 10.3 90 1217-1310 90-228 (257)
272 PRK14259 phosphate ABC transpo 99.1 2.1E-10 4.6E-15 129.5 10.0 62 1244-1309 159-228 (269)
273 PRK14272 phosphate ABC transpo 99.1 2.5E-10 5.3E-15 128.4 10.4 89 1218-1310 86-223 (252)
274 PRK14238 phosphate transporter 99.1 2.4E-10 5.2E-15 129.3 10.3 63 1244-1310 172-242 (271)
275 PRK14248 phosphate ABC transpo 99.1 2.4E-10 5.1E-15 129.5 10.2 63 1244-1310 169-239 (268)
276 TIGR03265 PhnT2 putative 2-ami 99.1 1.2E-10 2.6E-15 135.5 7.9 93 6-106 4-102 (353)
277 PRK13642 cbiO cobalt transport 99.1 2.4E-10 5.2E-15 129.7 10.2 121 1172-1310 44-216 (277)
278 TIGR03269 met_CoM_red_A2 methy 99.1 1.9E-10 4.2E-15 143.5 10.3 89 1218-1310 110-245 (520)
279 PRK11288 araG L-arabinose tran 99.1 1.7E-10 3.6E-15 143.2 9.6 123 1172-1310 41-216 (501)
280 PRK14257 phosphate ABC transpo 99.1 2.6E-10 5.6E-15 131.4 10.3 63 1244-1310 230-300 (329)
281 PRK14249 phosphate ABC transpo 99.1 2.7E-10 5.9E-15 127.8 10.3 63 1244-1310 152-222 (251)
282 TIGR03771 anch_rpt_ABC anchore 99.1 2.5E-10 5.4E-15 125.2 9.7 62 1244-1310 118-188 (223)
283 PRK09700 D-allose transporter 99.1 2E-10 4.4E-15 142.9 10.2 123 1172-1310 42-221 (510)
284 PRK11701 phnK phosphonate C-P 99.1 2.7E-10 5.9E-15 128.3 10.2 63 1244-1310 156-228 (258)
285 cd03231 ABC_CcmA_heme_exporter 99.1 1.7E-10 3.7E-15 124.4 8.1 86 1218-1307 74-198 (201)
286 PRK14275 phosphate ABC transpo 99.1 3E-10 6.4E-15 129.3 10.4 63 1244-1310 187-257 (286)
287 PRK00064 recF recombination pr 99.1 8.2E-10 1.8E-14 129.3 14.4 154 2-215 1-156 (361)
288 PRK10982 galactose/methyl gala 99.1 1.8E-10 3.9E-15 142.7 9.4 123 1172-1310 35-210 (491)
289 cd03224 ABC_TM1139_LivF_branch 99.1 1.6E-10 3.4E-15 127.4 7.9 93 7-105 1-100 (222)
290 PRK14262 phosphate ABC transpo 99.1 3E-10 6.5E-15 127.5 10.2 63 1244-1310 151-221 (250)
291 PRK10261 glutathione transport 99.1 2.4E-10 5.2E-15 144.7 10.5 125 1172-1310 361-540 (623)
292 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.1 2.5E-10 5.5E-15 115.0 8.6 74 1218-1310 64-143 (144)
293 PRK09536 btuD corrinoid ABC tr 99.1 1.5E-10 3.2E-15 135.9 7.9 93 6-104 3-101 (402)
294 PRK10869 recombination and rep 99.1 1E-06 2.2E-11 108.7 41.7 62 1245-1311 436-509 (553)
295 PRK14253 phosphate ABC transpo 99.1 3.2E-10 6.9E-15 127.2 10.2 63 1244-1310 150-220 (249)
296 PRK09452 potA putrescine/sperm 99.1 1.6E-10 3.4E-15 135.0 7.9 93 6-106 14-112 (375)
297 PRK14244 phosphate ABC transpo 99.1 3.3E-10 7.2E-15 127.1 10.3 63 1244-1310 154-224 (251)
298 PF13555 AAA_29: P-loop contai 99.1 1.4E-10 3E-15 94.0 5.0 48 5-55 2-51 (62)
299 PRK14235 phosphate transporter 99.1 3.5E-10 7.5E-15 127.8 10.3 63 1244-1310 168-238 (267)
300 cd03250 ABCC_MRP_domain1 Domai 99.1 2.2E-10 4.8E-15 124.1 8.4 62 1244-1310 132-203 (204)
301 cd03265 ABC_DrrA DrrA is the A 99.1 1.6E-10 3.4E-15 126.9 7.3 91 7-104 1-97 (220)
302 TIGR02633 xylG D-xylose ABC tr 99.1 2.7E-10 5.8E-15 141.7 10.2 123 1172-1310 38-217 (500)
303 PRK13632 cbiO cobalt transport 99.1 3.1E-10 6.7E-15 128.5 9.8 121 1172-1310 46-218 (271)
304 PRK10851 sulfate/thiosulfate t 99.1 1.7E-10 3.7E-15 134.2 7.8 92 7-106 3-100 (353)
305 PRK14255 phosphate ABC transpo 99.1 3.9E-10 8.4E-15 126.8 10.4 63 1244-1310 153-223 (252)
306 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 1.5E-10 3.3E-15 127.0 7.0 93 7-105 1-107 (218)
307 PRK14274 phosphate ABC transpo 99.1 3.7E-10 7.9E-15 127.3 10.2 63 1244-1310 160-230 (259)
308 cd03214 ABC_Iron-Siderophores_ 99.1 1.2E-10 2.7E-15 122.9 6.0 85 1219-1310 75-174 (180)
309 PRK14241 phosphate transporter 99.1 3.8E-10 8.3E-15 127.1 10.3 88 1218-1309 86-222 (258)
310 PRK09544 znuC high-affinity zi 99.1 2.6E-10 5.6E-15 126.9 8.8 61 1244-1308 125-195 (251)
311 COG2274 SunT ABC-type bacterio 99.1 1.5E-10 3.2E-15 144.3 7.4 121 1171-1310 509-683 (709)
312 cd03295 ABC_OpuCA_Osmoprotecti 99.1 2.2E-10 4.7E-15 127.8 8.0 92 7-104 1-99 (242)
313 PRK14260 phosphate ABC transpo 99.1 4.1E-10 8.9E-15 126.8 10.3 62 1244-1309 155-224 (259)
314 cd03219 ABC_Mj1267_LivG_branch 99.1 1.6E-10 3.6E-15 128.5 7.0 94 7-106 1-101 (236)
315 COG4608 AppF ABC-type oligopep 99.1 2.1E-10 4.4E-15 122.0 7.2 70 1237-1310 104-186 (268)
316 PRK14267 phosphate ABC transpo 99.1 2E-10 4.4E-15 129.1 7.7 97 1-105 1-110 (253)
317 cd03254 ABCC_Glucan_exporter_l 99.1 3E-10 6.6E-15 125.7 9.0 62 1244-1310 144-213 (229)
318 cd03264 ABC_drug_resistance_li 99.1 2E-10 4.4E-15 125.3 7.4 92 7-105 1-97 (211)
319 PRK14265 phosphate ABC transpo 99.1 4.3E-10 9.2E-15 127.3 10.3 62 1244-1309 166-235 (274)
320 cd03296 ABC_CysA_sulfate_impor 99.1 1.7E-10 3.6E-15 128.4 6.9 91 7-105 3-99 (239)
321 TIGR03522 GldA_ABC_ATP gliding 99.1 1.9E-10 4.1E-15 132.0 7.5 91 7-104 3-99 (301)
322 TIGR02323 CP_lyasePhnK phospho 99.1 4.3E-10 9.4E-15 126.5 10.3 63 1244-1310 153-225 (253)
323 PRK14258 phosphate ABC transpo 99.1 4.3E-10 9.3E-15 126.7 10.3 62 1244-1309 155-226 (261)
324 PRK14236 phosphate transporter 99.1 4.2E-10 9.1E-15 127.5 10.2 63 1244-1310 173-243 (272)
325 PRK13648 cbiO cobalt transport 99.1 3.4E-10 7.4E-15 128.1 9.4 121 1172-1310 46-218 (269)
326 PRK14250 phosphate ABC transpo 99.1 1.7E-10 3.8E-15 128.3 6.8 90 7-103 4-99 (241)
327 PRK10419 nikE nickel transport 99.1 4.9E-10 1.1E-14 126.5 10.5 63 1244-1310 156-228 (268)
328 cd03269 ABC_putative_ATPase Th 99.1 2.2E-10 4.7E-15 124.9 7.4 88 7-104 1-94 (210)
329 COG4619 ABC-type uncharacteriz 99.1 1.1E-10 2.5E-15 111.6 4.3 122 1173-1312 41-212 (223)
330 TIGR03410 urea_trans_UrtE urea 99.1 2.3E-10 5E-15 126.7 7.6 94 7-106 1-101 (230)
331 PRK14237 phosphate transporter 99.1 4.8E-10 1E-14 126.6 10.3 63 1244-1310 168-238 (267)
332 PRK14263 phosphate ABC transpo 99.1 4.9E-10 1.1E-14 125.8 10.2 86 1218-1308 90-222 (261)
333 PRK14251 phosphate ABC transpo 99.1 4.9E-10 1.1E-14 125.8 10.2 63 1244-1310 152-222 (251)
334 cd03268 ABC_BcrA_bacitracin_re 99.1 2.4E-10 5.2E-15 124.4 7.5 91 7-105 1-97 (208)
335 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.1 3.5E-10 7.5E-15 126.0 8.8 61 1244-1310 144-213 (238)
336 COG0488 Uup ATPase components 99.1 2.6E-10 5.7E-15 137.2 8.3 62 1244-1310 158-226 (530)
337 cd03256 ABC_PhnC_transporter A 99.1 2.4E-10 5.2E-15 127.7 7.6 93 7-105 1-103 (241)
338 cd03273 ABC_SMC2_euk Eukaryoti 99.1 4.9E-11 1.1E-15 133.4 2.0 49 2-52 1-50 (251)
339 cd03263 ABC_subfamily_A The AB 99.0 2.4E-10 5.3E-15 125.6 7.4 91 7-104 1-99 (220)
340 cd03218 ABC_YhbG The ABC trans 99.0 2.1E-10 4.6E-15 127.2 7.0 93 7-105 1-100 (232)
341 PRK14261 phosphate ABC transpo 99.0 5.1E-10 1.1E-14 125.8 10.0 63 1244-1310 154-224 (253)
342 cd03275 ABC_SMC1_euk Eukaryoti 99.0 4.2E-10 9.2E-15 125.3 9.3 48 4-53 1-48 (247)
343 cd03245 ABCC_bacteriocin_expor 99.0 3.2E-10 7E-15 124.7 8.2 62 1244-1310 145-214 (220)
344 PRK13540 cytochrome c biogenes 99.0 3.3E-10 7.2E-15 122.1 8.1 91 7-104 2-98 (200)
345 PRK10247 putative ABC transpor 99.0 2.8E-10 6E-15 125.1 7.6 92 6-104 7-104 (225)
346 PRK13633 cobalt transporter AT 99.0 4.8E-10 1E-14 127.5 9.7 62 1244-1310 149-220 (280)
347 cd03258 ABC_MetN_methionine_tr 99.0 2.8E-10 6E-15 126.3 7.6 93 7-105 2-107 (233)
348 cd03266 ABC_NatA_sodium_export 99.0 3.1E-10 6.7E-15 124.6 7.9 92 7-105 2-103 (218)
349 cd03259 ABC_Carb_Solutes_like 99.0 2.1E-10 4.6E-15 125.3 6.6 91 7-105 1-97 (213)
350 PRK14271 phosphate ABC transpo 99.0 5.7E-10 1.2E-14 126.3 10.2 63 1244-1310 168-238 (276)
351 PRK10247 putative ABC transpor 99.0 5.4E-10 1.2E-14 122.9 9.8 87 1218-1310 82-213 (225)
352 TIGR00960 3a0501s02 Type II (G 99.0 2.4E-10 5.1E-15 125.2 6.9 93 7-105 2-105 (216)
353 COG0497 RecN ATPase involved i 99.0 6.1E-07 1.3E-11 105.8 35.3 47 5-54 3-49 (557)
354 COG4555 NatA ABC-type Na+ tran 99.0 2.1E-10 4.6E-15 113.8 5.6 90 7-103 2-98 (245)
355 cd03262 ABC_HisP_GlnQ_permease 99.0 2.6E-10 5.6E-15 124.8 7.0 92 7-104 1-100 (213)
356 COG4172 ABC-type uncharacteriz 99.0 2E-10 4.3E-15 125.6 5.9 63 1244-1310 162-234 (534)
357 TIGR02314 ABC_MetN D-methionin 99.0 2.9E-10 6.3E-15 131.0 7.8 94 7-106 2-108 (343)
358 PRK14254 phosphate ABC transpo 99.0 6.2E-10 1.4E-14 126.5 10.3 63 1244-1310 185-256 (285)
359 PRK11614 livF leucine/isoleuci 99.0 4.1E-10 8.8E-15 125.3 8.7 93 6-104 5-104 (237)
360 TIGR01288 nodI ATP-binding ABC 99.0 2.7E-10 5.8E-15 131.1 7.4 90 7-103 5-100 (303)
361 PRK11247 ssuB aliphatic sulfon 99.0 2.9E-10 6.3E-15 126.7 7.3 89 6-105 12-106 (257)
362 PRK14243 phosphate transporter 99.0 5.9E-10 1.3E-14 125.6 10.0 62 1244-1309 156-225 (264)
363 PRK11607 potG putrescine trans 99.0 3.1E-10 6.6E-15 132.9 7.9 93 6-106 19-117 (377)
364 cd03230 ABC_DR_subfamily_A Thi 99.0 3E-10 6.5E-15 119.1 7.1 89 7-102 1-95 (173)
365 cd03229 ABC_Class3 This class 99.0 2.5E-10 5.4E-15 120.3 6.5 91 7-103 1-99 (178)
366 cd03252 ABCC_Hemolysin The ABC 99.0 4.5E-10 9.7E-15 125.0 8.9 62 1244-1310 143-212 (237)
367 PRK13548 hmuV hemin importer A 99.0 3.3E-10 7.2E-15 127.2 7.8 92 7-104 3-100 (258)
368 PRK11819 putative ABC transpor 99.0 5.1E-10 1.1E-14 140.3 10.4 63 1244-1310 168-236 (556)
369 cd03253 ABCC_ATM1_transporter 99.0 4.6E-10 9.9E-15 125.0 8.9 119 1172-1310 38-211 (236)
370 PRK10895 lipopolysaccharide AB 99.0 3.2E-10 7E-15 126.4 7.6 93 6-104 3-102 (241)
371 COG4525 TauB ABC-type taurine 99.0 2.7E-10 5.8E-15 112.1 6.0 91 6-107 3-101 (259)
372 PRK15134 microcin C ABC transp 99.0 5.5E-10 1.2E-14 139.6 10.5 63 1244-1310 161-233 (529)
373 TIGR01186 proV glycine betaine 99.0 3.1E-10 6.7E-15 131.5 7.6 88 13-106 1-97 (363)
374 PRK15134 microcin C ABC transp 99.0 5.2E-10 1.1E-14 139.9 10.2 63 1244-1310 430-502 (529)
375 PRK11231 fecE iron-dicitrate t 99.0 2.6E-10 5.6E-15 128.2 6.8 92 7-104 3-100 (255)
376 PRK10070 glycine betaine trans 99.0 3.8E-10 8.3E-15 132.3 8.4 95 6-106 4-132 (400)
377 TIGR03269 met_CoM_red_A2 methy 99.0 5.5E-10 1.2E-14 139.5 10.4 89 1218-1310 366-504 (520)
378 cd03242 ABC_RecF RecF is a rec 99.0 4E-10 8.7E-15 127.1 8.2 47 4-53 1-47 (270)
379 PRK13549 xylose transporter AT 99.0 4.8E-10 1E-14 139.3 9.6 63 1244-1310 410-481 (506)
380 PRK11629 lolD lipoprotein tran 99.0 4.2E-10 9.1E-15 124.7 8.2 94 6-105 5-112 (233)
381 cd03260 ABC_PstB_phosphate_tra 99.0 2.4E-10 5.1E-15 126.3 6.1 92 7-105 1-105 (227)
382 cd03251 ABCC_MsbA MsbA is an e 99.0 4E-10 8.7E-15 125.3 8.0 120 1172-1310 39-212 (234)
383 PRK10418 nikD nickel transport 99.0 8E-10 1.7E-14 124.0 10.5 63 1244-1310 145-217 (254)
384 CHL00131 ycf16 sulfate ABC tra 99.0 7.5E-10 1.6E-14 124.5 10.2 63 1244-1310 156-228 (252)
385 PRK11000 maltose/maltodextrin 99.0 3.6E-10 7.7E-15 132.8 7.8 93 6-106 3-101 (369)
386 TIGR02673 FtsE cell division A 99.0 3.7E-10 8E-15 123.6 7.5 93 7-105 2-104 (214)
387 COG1124 DppF ABC-type dipeptid 99.0 5.5E-10 1.2E-14 115.7 8.0 78 6-89 3-91 (252)
388 PRK10575 iron-hydroxamate tran 99.0 3.3E-10 7.2E-15 127.9 7.1 93 6-104 11-109 (265)
389 PRK09700 D-allose transporter 99.0 4.8E-10 1E-14 139.7 9.2 63 1244-1310 414-485 (510)
390 PRK11174 cysteine/glutathione 99.0 4.8E-10 1E-14 142.8 9.4 87 1218-1310 424-559 (588)
391 PRK13409 putative ATPase RIL; 99.0 6.3E-10 1.4E-14 138.4 10.1 88 1218-1309 401-529 (590)
392 PRK11831 putative ABC transpor 99.0 4.1E-10 9E-15 127.3 7.8 94 6-105 7-109 (269)
393 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 2.7E-10 5.8E-15 148.2 7.1 120 1172-1310 516-687 (710)
394 PRK13547 hmuV hemin importer A 99.0 5.7E-10 1.2E-14 125.5 8.8 63 1244-1310 150-231 (272)
395 PRK11288 araG L-arabinose tran 99.0 5E-10 1.1E-14 139.0 9.1 63 1244-1310 401-472 (501)
396 PRK11153 metN DL-methionine tr 99.0 4.1E-10 8.9E-15 131.2 7.9 93 7-105 2-107 (343)
397 PRK14247 phosphate ABC transpo 99.0 3.8E-10 8.2E-15 126.7 7.3 94 6-105 3-107 (250)
398 cd03248 ABCC_TAP TAP, the Tran 99.0 6.3E-10 1.4E-14 122.8 8.9 62 1244-1310 155-224 (226)
399 PRK10908 cell division protein 99.0 4.2E-10 9.1E-15 123.7 7.3 93 7-105 2-104 (222)
400 TIGR02633 xylG D-xylose ABC tr 99.0 5E-10 1.1E-14 139.2 8.9 63 1244-1310 408-479 (500)
401 TIGR02315 ABC_phnC phosphonate 99.0 3.7E-10 8E-15 126.3 7.0 92 7-104 2-103 (243)
402 TIGR03411 urea_trans_UrtD urea 99.0 5.5E-10 1.2E-14 124.7 8.3 93 7-105 3-102 (242)
403 PRK14266 phosphate ABC transpo 99.0 9.3E-10 2E-14 123.5 10.1 63 1244-1310 151-221 (250)
404 PRK10253 iron-enterobactin tra 99.0 3.8E-10 8.2E-15 127.4 7.0 94 5-104 6-105 (265)
405 PRK11300 livG leucine/isoleuci 99.0 5.3E-10 1.1E-14 126.0 8.0 94 6-105 5-105 (255)
406 PF13476 AAA_23: AAA domain; P 99.0 5.4E-10 1.2E-14 121.7 7.8 48 6-56 1-48 (202)
407 COG3840 ThiQ ABC-type thiamine 99.0 3.1E-10 6.7E-15 110.5 5.1 92 7-106 2-97 (231)
408 PRK13647 cbiO cobalt transport 99.0 5E-10 1.1E-14 126.8 7.7 94 6-105 4-105 (274)
409 cd03257 ABC_NikE_OppD_transpor 99.0 4.9E-10 1.1E-14 124.1 7.5 93 7-105 2-109 (228)
410 KOG0055|consensus 99.0 4.3E-10 9.3E-15 142.0 7.7 105 1187-1310 410-563 (1228)
411 PRK10762 D-ribose transporter 99.0 7.1E-10 1.5E-14 137.6 9.7 63 1244-1310 400-471 (501)
412 PRK13546 teichoic acids export 99.0 1.2E-09 2.6E-14 122.2 10.6 63 1244-1310 148-219 (264)
413 cd03225 ABC_cobalt_CbiO_domain 99.0 4.3E-10 9.4E-15 122.7 6.9 90 9-104 2-100 (211)
414 cd03301 ABC_MalK_N The N-termi 99.0 3.8E-10 8.3E-15 123.3 6.4 90 7-104 1-96 (213)
415 PRK15439 autoinducer 2 ABC tra 99.0 6.7E-10 1.5E-14 137.8 9.3 63 1244-1310 408-479 (510)
416 cd03292 ABC_FtsE_transporter F 99.0 5.1E-10 1.1E-14 122.6 7.4 93 7-105 1-103 (214)
417 PRK10790 putative multidrug tr 99.0 4.3E-10 9.2E-15 143.2 7.7 120 1172-1310 378-550 (592)
418 PRK13657 cyclic beta-1,2-gluca 99.0 4.1E-10 8.8E-15 143.1 7.5 119 1173-1310 373-545 (588)
419 TIGR01189 ccmA heme ABC export 99.0 4.9E-10 1.1E-14 120.6 7.1 91 7-104 1-97 (198)
420 PRK15064 ABC transporter ATP-b 99.0 8.8E-10 1.9E-14 137.8 10.4 63 1244-1310 160-228 (530)
421 TIGR02211 LolD_lipo_ex lipopro 99.0 5.2E-10 1.1E-14 123.1 7.3 93 7-105 2-108 (221)
422 TIGR01257 rim_protein retinal- 99.0 8.1E-10 1.8E-14 150.3 10.6 93 6-105 928-1028(2272)
423 cd03246 ABCC_Protease_Secretio 99.0 5.7E-10 1.2E-14 117.0 7.2 88 7-101 1-96 (173)
424 TIGR00972 3a0107s01c2 phosphat 99.0 5.2E-10 1.1E-14 125.2 7.3 92 7-105 2-106 (247)
425 TIGR03258 PhnT 2-aminoethylpho 99.0 5.4E-10 1.2E-14 130.1 7.7 95 6-106 5-105 (362)
426 cd03293 ABC_NrtD_SsuB_transpor 99.0 3.7E-10 8.1E-15 124.0 6.0 88 7-105 1-98 (220)
427 PRK13538 cytochrome c biogenes 99.0 4.9E-10 1.1E-14 121.2 6.8 92 7-105 2-99 (204)
428 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 7.6E-10 1.6E-14 121.4 8.2 63 1244-1310 147-218 (224)
429 cd03244 ABCC_MRP_domain2 Domai 99.0 7.5E-10 1.6E-14 121.8 8.2 62 1244-1310 144-213 (221)
430 TIGR03864 PQQ_ABC_ATP ABC tran 99.0 5.7E-10 1.2E-14 123.9 7.3 91 7-104 2-98 (236)
431 PRK14252 phosphate ABC transpo 99.0 1.3E-09 2.8E-14 123.2 10.3 63 1244-1310 166-236 (265)
432 TIGR01257 rim_protein retinal- 99.0 9.2E-10 2E-14 149.8 10.6 89 1218-1310 1004-1136(2272)
433 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 4E-10 8.6E-15 145.8 6.9 87 1218-1310 528-660 (686)
434 PRK13635 cbiO cobalt transport 99.0 6.2E-10 1.3E-14 126.2 7.6 97 1-104 1-106 (279)
435 cd03298 ABC_ThiQ_thiamine_tran 99.0 6E-10 1.3E-14 121.5 7.2 90 7-105 1-95 (211)
436 cd03231 ABC_CcmA_heme_exporter 99.0 6.5E-10 1.4E-14 119.8 7.3 91 7-104 1-97 (201)
437 PRK09493 glnQ glutamine ABC tr 99.0 6E-10 1.3E-14 124.2 7.2 92 7-104 2-101 (240)
438 cd03228 ABCC_MRP_Like The MRP 99.0 5.9E-10 1.3E-14 116.7 6.7 88 7-101 1-96 (171)
439 PRK13648 cbiO cobalt transport 99.0 7.8E-10 1.7E-14 125.2 8.1 97 2-104 3-108 (269)
440 PRK13539 cytochrome c biogenes 99.0 6.3E-10 1.4E-14 120.6 7.0 88 7-103 3-96 (207)
441 PRK13650 cbiO cobalt transport 99.0 7.2E-10 1.6E-14 125.8 7.8 94 6-105 4-107 (279)
442 TIGR03375 type_I_sec_LssB type 99.0 5.4E-10 1.2E-14 144.8 7.5 119 1173-1310 503-675 (694)
443 PRK14242 phosphate transporter 99.0 7.5E-10 1.6E-14 124.5 7.7 98 1-105 1-111 (253)
444 PRK13547 hmuV hemin importer A 99.0 6.3E-10 1.4E-14 125.2 7.0 92 7-104 2-107 (272)
445 cd03294 ABC_Pro_Gly_Bertaine T 99.0 5.5E-10 1.2E-14 126.2 6.6 92 8-105 26-127 (269)
446 PRK11264 putative amino-acid A 99.0 7.2E-10 1.6E-14 124.5 7.5 91 7-103 4-108 (250)
447 TIGR01166 cbiO cobalt transpor 99.0 7.2E-10 1.6E-14 118.6 7.1 49 1244-1292 132-189 (190)
448 PRK11248 tauB taurine transpor 99.0 8.3E-10 1.8E-14 123.5 7.8 87 7-104 2-94 (255)
449 PRK10584 putative ABC transpor 99.0 8.7E-10 1.9E-14 121.9 7.8 93 6-104 6-112 (228)
450 TIGR01188 drrA daunorubicin re 99.0 7E-10 1.5E-14 127.6 7.2 84 14-104 2-90 (302)
451 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 1.3E-09 2.8E-14 136.7 10.2 63 1244-1310 166-234 (552)
452 TIGR03873 F420-0_ABC_ATP propo 99.0 7.6E-10 1.7E-14 124.5 7.3 92 7-104 2-99 (256)
453 PRK15064 ABC transporter ATP-b 99.0 1.3E-09 2.8E-14 136.3 10.1 63 1244-1310 443-511 (530)
454 PRK11701 phnK phosphonate C-P 99.0 1.2E-09 2.6E-14 123.1 8.8 97 1-103 1-114 (258)
455 cd03251 ABCC_MsbA MsbA is an e 99.0 6.5E-10 1.4E-14 123.6 6.5 91 7-104 1-99 (234)
456 TIGR01978 sufC FeS assembly AT 99.0 6.9E-10 1.5E-14 124.3 6.8 93 7-105 1-102 (243)
457 PRK11124 artP arginine transpo 99.0 8.1E-10 1.7E-14 123.3 7.3 91 7-103 3-105 (242)
458 PRK13540 cytochrome c biogenes 99.0 7.7E-10 1.7E-14 119.3 6.7 110 1172-1295 38-192 (200)
459 TIGR03719 ABC_ABC_ChvD ATP-bin 99.0 1.4E-09 3.1E-14 136.4 10.1 63 1244-1310 448-516 (552)
460 TIGR01193 bacteriocin_ABC ABC- 99.0 6.5E-10 1.4E-14 144.4 7.2 119 1173-1310 512-684 (708)
461 TIGR03608 L_ocin_972_ABC putat 99.0 6.8E-10 1.5E-14 120.7 6.3 90 10-105 2-101 (206)
462 KOG0994|consensus 99.0 0.00036 7.9E-09 85.6 54.2 98 380-490 1198-1295(1758)
463 cd03254 ABCC_Glucan_exporter_l 99.0 6.7E-10 1.4E-14 123.0 6.2 91 6-103 2-99 (229)
464 PRK14264 phosphate ABC transpo 99.0 1.9E-09 4.1E-14 123.9 10.0 63 1244-1310 205-276 (305)
465 PRK11176 lipid transporter ATP 99.0 5.9E-10 1.3E-14 141.9 6.3 87 1218-1310 418-554 (582)
466 PRK13632 cbiO cobalt transport 98.9 1E-09 2.2E-14 124.3 7.5 94 6-105 7-109 (271)
467 PRK13642 cbiO cobalt transport 98.9 1.1E-09 2.5E-14 124.2 7.9 94 6-105 4-107 (277)
468 COG4619 ABC-type uncharacteriz 98.9 5.4E-10 1.2E-14 107.1 4.3 90 7-103 4-99 (223)
469 cd03226 ABC_cobalt_CbiO_domain 98.9 7.4E-10 1.6E-14 120.1 6.1 88 9-105 2-97 (205)
470 PRK13541 cytochrome c biogenes 98.9 1.3E-09 2.7E-14 117.1 7.8 88 7-104 2-94 (195)
471 TIGR01192 chvA glucan exporter 98.9 9.1E-10 2E-14 139.0 7.5 62 1244-1310 476-545 (585)
472 PRK10771 thiQ thiamine transpo 98.9 1.3E-09 2.8E-14 120.7 7.9 90 7-105 2-96 (232)
473 cd00267 ABC_ATPase ABC (ATP-bi 98.9 1.9E-09 4.1E-14 111.3 8.6 74 1218-1310 74-156 (157)
474 PRK14241 phosphate transporter 98.9 1.3E-09 2.8E-14 122.8 7.9 94 6-105 4-110 (258)
475 PRK11819 putative ABC transpor 98.9 1.9E-09 4.1E-14 135.2 10.2 89 1218-1310 388-518 (556)
476 cd03238 ABC_UvrA The excision 98.9 1.7E-09 3.6E-14 111.9 8.0 64 1244-1312 92-166 (176)
477 cd03245 ABCC_bacteriocin_expor 98.9 1E-09 2.3E-14 120.6 6.9 91 6-103 2-100 (220)
478 cd03290 ABCC_SUR1_N The SUR do 98.9 1.7E-09 3.7E-14 118.5 8.6 62 1244-1310 145-217 (218)
479 COG3845 ABC-type uncharacteriz 98.9 1.4E-09 3E-14 123.7 7.8 122 1173-1310 42-216 (501)
480 PRK13545 tagH teichoic acids e 98.9 1.3E-09 2.8E-14 128.6 7.9 63 1244-1310 148-219 (549)
481 PRK10744 pstB phosphate transp 98.9 1.1E-09 2.3E-14 123.6 6.8 93 6-105 13-118 (260)
482 TIGR03740 galliderm_ABC gallid 98.9 1E-09 2.3E-14 120.7 6.6 88 7-104 1-94 (223)
483 cd03235 ABC_Metallic_Cations A 98.9 1E-09 2.2E-14 119.9 6.4 86 9-105 2-95 (213)
484 cd03215 ABC_Carb_Monos_II This 98.9 1.8E-09 3.9E-14 114.3 8.1 89 7-104 5-102 (182)
485 PRK14235 phosphate transporter 98.9 1.2E-09 2.6E-14 123.4 7.1 93 6-105 19-124 (267)
486 PRK10619 histidine/lysine/argi 98.9 1.3E-09 2.9E-14 122.6 7.5 93 5-103 4-115 (257)
487 PRK14269 phosphate ABC transpo 98.9 1.3E-09 2.8E-14 121.8 7.3 91 7-104 3-102 (246)
488 TIGR03005 ectoine_ehuA ectoine 98.9 1.4E-09 3.1E-14 122.1 7.6 92 7-104 1-111 (252)
489 PRK13539 cytochrome c biogenes 98.9 1.8E-09 3.9E-14 117.0 8.2 84 1218-1307 74-198 (207)
490 cd03279 ABC_sbcCD SbcCD and ot 98.9 3.7E-10 7.9E-15 122.8 2.7 53 2-56 1-57 (213)
491 PRK13637 cbiO cobalt transport 98.9 1.5E-09 3.3E-14 123.6 7.8 94 6-105 2-109 (287)
492 TIGR01277 thiQ thiamine ABC tr 98.9 1.5E-09 3.2E-14 118.4 7.5 90 7-105 1-95 (213)
493 PRK10636 putative ABC transpor 98.9 2.3E-09 4.9E-14 135.8 10.2 63 1244-1310 435-503 (638)
494 PRK11147 ABC transporter ATPas 98.9 2.2E-09 4.7E-14 136.6 10.1 63 1244-1310 445-514 (635)
495 PRK15112 antimicrobial peptide 98.9 1.6E-09 3.4E-14 122.5 7.8 91 7-103 5-112 (267)
496 PRK13652 cbiO cobalt transport 98.9 1.7E-09 3.7E-14 122.8 8.0 93 6-104 3-103 (277)
497 PRK13543 cytochrome c biogenes 98.9 1.5E-09 3.3E-14 118.3 7.3 90 6-104 11-106 (214)
498 PRK13638 cbiO cobalt transport 98.9 1.6E-09 3.5E-14 122.8 7.7 92 7-104 2-102 (271)
499 PRK13644 cbiO cobalt transport 98.9 1.5E-09 3.3E-14 122.8 7.5 92 7-104 2-102 (274)
500 cd03247 ABCC_cytochrome_bd The 98.9 1E-09 2.2E-14 115.9 5.6 87 7-101 1-95 (178)
No 1
>KOG0962|consensus
Probab=100.00 E-value=6.8e-110 Score=1015.61 Aligned_cols=1236 Identities=30% Similarity=0.448 Sum_probs=1056.1
Q ss_pred CCcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
|+.|.+|+|.||+|||+++.+.|.|..|+|+||||||||||||+.|++||++|.+||++ +|+.|+|+|.+
T Consensus 1 Ms~i~klsI~GIRSf~~~d~~~i~F~sPlTLIvG~NG~GKTTiIEcLKyatTG~lPpns-k~~~FiHdpkI--------- 70 (1294)
T KOG0962|consen 1 MSSIDKLSIRGIRSFDDKDRNTIEFFSPLTLIVGANGTGKTTIIECLKYATTGELPPNS-KGGSFIHDPKV--------- 70 (1294)
T ss_pred CchhHhhHhhcccccCCcccceeeecCCeeeEecCCCCCchhHHHHHHHHhcCcCCCCC-cCCCCCCCccc---------
Confidence 88899999999999997777999999999999999999999999999999999999999 78899999999
Q ss_pred cCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee--ccccchhh
Q psy9513 81 SGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL--GCLQQESV 158 (1491)
Q Consensus 81 ~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~--~~~q~~~~ 158 (1491)
.+-..|.|.|.|.|.+.+|..+.+.|++..+.+..+..++++++.+..+ .+|+..++ +|. ++|
T Consensus 71 -----------age~ev~AqvkL~f~~~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~--~~g~k~tlS~r~~--d~d 135 (1294)
T KOG0962|consen 71 -----------AGETEVRAQVKLAFTDVNGETMICTRTIQLTQKRTKMEFKTLESVIWAI--NDGDRVTLSGRSA--DLD 135 (1294)
T ss_pred -----------cchhhhhheeeeeeecCCCcEEEeehhhHHHHHHHHHHHHHHhhhheee--ecCccccccchhh--hhh
Confidence 6667789999999999999999999999998777788899999998888 56776666 899 999
Q ss_pred HHhHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHH
Q psy9513 159 LEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYK 238 (1491)
Q Consensus 159 ~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~ 238 (1491)
..||..+||+++||+|||||||.++.|||++|+.++..||+||++++|.++++.+++ ++++....++..+..++++
T Consensus 136 ~~~~~~lGVskAIl~~VIFcHQEdS~WPLsEp~~LKkkfD~IF~~tky~KAld~~kk----~rkd~~~evk~~~~~l~~l 211 (1294)
T KOG0962|consen 136 AEMPLHLGVSKAILENVIFCHQEDSTWPLSEPKNLKKKFDDIFSATKYTKALDSLKK----LRKDQSQEVKTKKQELEHL 211 (1294)
T ss_pred HHHHHhcCCcHHHHhhhheecccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9513 239 K---EADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSI 314 (1491)
Q Consensus 239 ~---~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 314 (1491)
+ +.....+..+......+... .+..+++.++.+......+++....++..+..+...+..+...+..++..+...+
T Consensus 212 k~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i 291 (1294)
T KOG0962|consen 212 KTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKI 291 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8 88889999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q psy9513 315 KQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNN 394 (1491)
Q Consensus 315 ~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~ 394 (1491)
...+.+++..+...+.+|...+.........++.++..+..+...+......+..+.+.++.....+..........++.
T Consensus 292 ~~~~~~t~~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~ 371 (1294)
T KOG0962|consen 292 LKIFDGTDEELGELLSNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQE 371 (1294)
T ss_pred ccccccchHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 395 LADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGN 474 (1491)
Q Consensus 395 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~ 474 (1491)
+...+....+........-...+-.-+...+.....++.+........ ++.+..++..+......+..........
T Consensus 372 ~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~q~~k~~~~~----~s~~~~~~~~~~~~~~~l~~~~~~~~~~ 447 (1294)
T KOG0962|consen 372 LAHQYQLDSVESLEFMAEVKKDFRNLILERFGGLEDDIKQRKKDIAEL----ETNALDLIKEITDREVSLEAQKRIKDEI 447 (1294)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887654444322222122222333344444445555544444333 3444444444444444444444333333
Q ss_pred HH-HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHch
Q psy9513 475 KK-DLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQN 553 (1491)
Q Consensus 475 ~~-~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~~~ 553 (1491)
.. +...+...+.........+..+...+......+..+........+...+...+..+..++..+..+...+..++..+
T Consensus 448 ~~~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~ 527 (1294)
T KOG0962|consen 448 KKLESKGLKDKSFQYEDSTDDLKKLDERLKEAERLLESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDA 527 (1294)
T ss_pred HHHHHHhHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 33 44555555555555555667777777777788888777667788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 554 ITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVS 633 (1491)
Q Consensus 554 ~~~~~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~~~~~~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~ 633 (1491)
..++.+.++......+...++.+..++.+.+....+.+... ...++..+......+....+..+.+......+.....
T Consensus 528 ~~~~~~~~~~k~~~~k~~~~~k~~~~~~~~~~~~~~~~~~~--~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~ 605 (1294)
T KOG0962|consen 528 EKRAKLELLKKKLRKKDAELRKIKSRLSDEKGRAIEFPLTN--DRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRN 605 (1294)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcchhhhhhhccCccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888877766554444432211 1578888999999999999999988888888888888
Q ss_pred hhHHHHH-HHHHHHHHHHHHHHhhhCC-CChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccccccC
Q psy9513 634 NSSKTLR-DQKRTLAELMDRMELVLGS-KPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLCTRFF 711 (1491)
Q Consensus 634 ~~~~~l~-~~~~~l~~~~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 711 (1491)
.+...++ ..+..+......+...+|. .+|.+.|..++.++......+..+.....+|+.|+.++... ||||+|.++|
T Consensus 606 ~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~-~~CplC~r~f 684 (1294)
T KOG0962|consen 606 GIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRS-HCCPLCQRSF 684 (1294)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc-cCCCccCCcc
Confidence 8887777 4455555555677777776 88999999999999999999999999999999999999986 9999999999
Q ss_pred CCCCchhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHH
Q psy9513 712 ESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGEL 791 (1491)
Q Consensus 712 ~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~~~~~~ 791 (1491)
+.... ..++.+|...+...|+.+..+...+.......+.+..+.+....+.++....++.++.+++.....+.....+.
T Consensus 685 ~~eee-~ef~~~l~~~i~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~e~~~~l~~~~~el~~~~~~~ 763 (1294)
T KOG0962|consen 685 TTEEE-VEFIKKLESKIDSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIPELEKELQEVYEELGDLSEEE 763 (1294)
T ss_pred chHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhh
Confidence 98744 78899999999999999999999999888887777778999886777656699999999999999999999999
Q ss_pred HHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 792 KKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIE 871 (1491)
Q Consensus 792 ~~~e~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~ 871 (1491)
+..+..+..+......+..+..+...++.+..++.....+++.+...+.........+.+++.+...+...+..+..+++
T Consensus 764 e~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E 843 (1294)
T KOG0962|consen 764 EDDEKLLDTIDAAEESAETLQTDVTVLERFLKDLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIE 843 (1294)
T ss_pred hHHHHHhcccchhHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888889999999999999999999999999977555788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHH
Q psy9513 872 SGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELD 951 (1491)
Q Consensus 872 ~l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~ 951 (1491)
.++.........++.+....+........+...++...++++.+.++.+.+..+...+..+...+.++...+.++.++..
T Consensus 844 ~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e 923 (1294)
T KOG0962|consen 844 CLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKE 923 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy9513 952 ALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQS 1031 (1491)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~ 1031 (1491)
...++........++.+.++......+..+..-...+...+. ..+. ...+..+...++.+.+++......
T Consensus 924 ~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~----~~~~------~~~l~~~~e~l~~~~~~~~~~~~~ 993 (1294)
T KOG0962|consen 924 ELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGF----DDLR------IAQLSESEEHLEERDNEVNEIKQK 993 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh----hhhc------hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888875554444444444444444433333333332222111 0111 455666777788888999999999
Q ss_pred HhhhhhhhhchHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHh-------H-------------HHHHH
Q psy9513 1032 IANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIM-----ISDLTKYHHTLE-------N-------------CVIKY 1086 (1491)
Q Consensus 1032 i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~l~~~-----~~~l~~~~~~L~-------~-------------~~i~~ 1086 (1491)
++.+...+++++||++|+.+..+++++..++..+... +..+..++..|. . .+++.
T Consensus 994 l~~~~~~er~l~dnl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~ 1073 (1294)
T KOG0962|consen 994 IRNQYQRERNLKDNLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKK 1073 (1294)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998887222 222222222222 2 66777
Q ss_pred HHHHhh-HHhHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEeec
Q psy9513 1087 HSQKMR-SINRLI-REYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAA 1164 (1491)
Q Consensus 1087 ~~~e~~-~~~k~i-~~y~~~~~~~~~~~~~~~dl~~~~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~ 1164 (1491)
..+++. +.|+++ .+|+.++|++.++.+++.|+++|++|||.|+|+||++||.+||+||++||..+|+|+|||||.|++
T Consensus 1074 ~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~iI~elW~~tYrG~Did~IrIrs 1153 (1294)
T KOG0962|consen 1074 LKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRIIRELWRKTYRGTDIDYIKIRS 1153 (1294)
T ss_pred HHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceEEEee
Confidence 777865 889999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHh
Q psy9513 1165 DVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1244 (1491)
Q Consensus 1165 ~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~ 1244 (1491)
|.++.+.+++||||+|||.++++++||+++||+|+++|||+|||+
T Consensus 1154 D~~~s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsliIRL----------------------------------- 1198 (1294)
T KOG0962|consen 1154 DSVSSSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIRL----------------------------------- 1198 (1294)
T ss_pred ccccccccccccceeEEEEechHHHHhccCccchHHHHHHHHHHH-----------------------------------
Confidence 988866788999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------------HhhcCceEEEEccCHHHHHHHhcccc-ceEEEEec
Q psy9513 1245 RDHKALAETFSRNCGIFALDEPTTNLDIKNA--------------SDQKNFQLIVITHDEEFIENLTAIDR-AYVVRIVR 1309 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------------~~~~~~~~i~~thd~~~~~~~~~~~~-~~~~~l~~ 1309 (1491)
|+|.+||.+|++|.|||||++||..++ ..+.+|++|+||||.+|+..++.++| ++||++.+
T Consensus 1199 ----ALAEtf~snCgvLALDEPTTNLD~~niesLa~~L~~II~~rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~k 1274 (1294)
T KOG0962|consen 1199 ----ALAETFGSNCGVLALDEPTTNLDRENIESLAKALSRIIEERRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKK 1274 (1294)
T ss_pred ----HHHHHHhhccccccccCCccccCHhHHHHHHHHHHHHHHHHhhccCcceeeeehHHHHHHHhhhcccchheeeecc
Confidence 999999999999999999999999998 45669999999999999999998888 99999999
Q ss_pred CCCcceeeeeccc
Q psy9513 1310 DHKGLSDIHLRSL 1322 (1491)
Q Consensus 1310 ~~~~~~~i~~~~~ 1322 (1491)
+..++|.+.+.++
T Consensus 1275 d~~~~s~i~~~~~ 1287 (1294)
T KOG0962|consen 1275 DESQISMIVKHSI 1287 (1294)
T ss_pred cchhcceeeeecC
Confidence 9999988888653
No 2
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-108 Score=1108.19 Aligned_cols=1245 Identities=29% Similarity=0.475 Sum_probs=1153.1
Q ss_pred cccceeeecccccCC--CCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 3 LLDQLHIMGIRNFPA--DKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 3 ~~~~l~i~~~~~~~~--~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
++.+|.|+||+||++ +..+.|+|+.|+++|+|||||||||||+||+|||||..||++ +|.+|++|+.+
T Consensus 2 ~~~kl~i~g~rSf~~~~~~~~~I~F~~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~-~g~~~i~~~~~--------- 71 (1311)
T TIGR00606 2 KFLKMSILGVRSFGIEDKDKQIIDFFSPLTILVGPNGAGKTTIIECLKYICTGDFPPGT-KGNTFVHDPKV--------- 71 (1311)
T ss_pred ccceeeeeceecCCCccccceeeecccceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCceEecCCCc---------
Confidence 467899999999986 555899999999999999999999999999999999999985 58889999877
Q ss_pred cCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee--ccccchhh
Q psy9513 81 SGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL--GCLQQESV 158 (1491)
Q Consensus 81 ~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~--~~~q~~~~ 158 (1491)
...+.+.+.|.+.|.+.+|..|.|.|++..+++.++..+++.++...++ .+|...++ +|. +++
T Consensus 72 -----------~~~~~~~a~V~l~F~~~~g~~~~v~R~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~s~~~~--e~~ 136 (1311)
T TIGR00606 72 -----------AQETDVRAQIRLQFRDVNGEECAVVRSMVCTQKTKKTEFKTLEGVITRY--KHGEKVSLSSKCA--EID 136 (1311)
T ss_pred -----------CccHhhhheeEEEEEcCCCCEEEEEeeeeeeeccCcccchhhhhhheec--CCCceeeccccHH--HHH
Confidence 4445677899999987889999999998766544444566666655444 55766555 788 999
Q ss_pred HHhHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHH
Q psy9513 159 LEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYK 238 (1491)
Q Consensus 159 ~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~ 238 (1491)
..|+.++||++++|++|||||||++.||++.|+.++++|++|||++.|.++++.++. +.+.+...++.++..++++
T Consensus 137 ~~i~~~lGv~~~~f~~vi~~~Qge~~~~~~~~~~rk~~~d~if~~~~y~k~~~~~~~----~~k~~~~~~~~~~~~~~~~ 212 (1311)
T TIGR00606 137 REMISHLGVSKAVLNNVIFCHQEDSNWPLSEGKALKQKFDEIFSATRYIKALETLRQ----VRQTQGQKVQEHQMELKYL 212 (1311)
T ss_pred HHHHHHhCCCHHHHhhceeeCCcccccccCChHHHHHHHHHHhhhhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999988
Q ss_pred H---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9513 239 K---EADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSI 314 (1491)
Q Consensus 239 ~---~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~ 314 (1491)
+ +.+..++..+...+..+..+ ..+..++.++.++......+......+..+..++..+..........+..+...+
T Consensus 213 ~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~~~~~~~~rL~~~i 292 (1311)
T TIGR00606 213 KQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKM 292 (1311)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8 88899999999999999999 9999999999999999999999999999999999999999999999999998877
Q ss_pred hhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Q psy9513 315 KQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNN 394 (1491)
Q Consensus 315 ~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~ 394 (1491)
..++.++..++...+.+|...+.....++..++..+..+..++..+......+...++.++.....+...+..+...+.+
T Consensus 293 ~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~~~~~~ 372 (1311)
T TIGR00606 293 EKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQS 372 (1311)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 395 LADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGN 474 (1491)
Q Consensus 395 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~ 474 (1491)
+...+.+.+++..+.++.++..++..+...+......+..+...+.......+..++.++..+....+.+......+...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~ 452 (1311)
T TIGR00606 373 LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK 452 (1311)
T ss_pred HHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q psy9513 475 KKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNI 554 (1491)
Q Consensus 475 ~~~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~~~~ 554 (1491)
...+..+..++..+......+..++..+..+...++.+...+....+...+...+..+..++..+..+..++..++..+.
T Consensus 453 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~~~~~l~~~~~~~~~~~~ 532 (1311)
T TIGR00606 453 QEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTT 532 (1311)
T ss_pred HHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988889999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9513 555 TLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSN 634 (1491)
Q Consensus 555 ~~~~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~~~~~~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~ 634 (1491)
..+++++++.++..+...+..++..|.+.+..++| .+|.. ..+..++......+...++....+++.+..+++.+..
T Consensus 533 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~ 609 (1311)
T TIGR00606 533 TRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLG-YFPNK--KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNH 609 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 55544 7899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--hhcCCCCccccccCC
Q psy9513 635 SSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKL--EENEPRCPLCTRFFE 712 (1491)
Q Consensus 635 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 712 (1491)
+...+..+..++..+...+...|++.+|+..|..++..+..+...+....+...+|..|+..+ +.. +|||+|.|+|+
T Consensus 610 ~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~k~ie~a~~~~~-~~C~LC~R~f~ 688 (1311)
T TIGR00606 610 INNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQ-SCCPVCQRVFQ 688 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CcCCCCCCCCC
Confidence 999999999999999888888888999999999999999999999999999999999999999 665 99999999999
Q ss_pred CCCchhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHH
Q psy9513 713 SDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGELK 792 (1491)
Q Consensus 713 ~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~~~~~~~ 792 (1491)
++.....++.+|+..+..+|.....+...+..++..++.+..+.+.+..+..+...++|.++.++..+..++..+...++
T Consensus 689 ~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le 768 (1311)
T TIGR00606 689 TEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE 768 (1311)
T ss_pred ChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence 88556789999999999999999999999999999999999999999999999644999999999999999999999999
Q ss_pred HHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 793 KLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIES 872 (1491)
Q Consensus 793 ~~e~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~ 872 (1491)
.+...+..+...++.+..+..+...+.++..++..++.+++.++..+...+ ...+++.++.++..+...+..+...+..
T Consensus 769 ~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~-~~~s~~ele~ei~~~~~el~~l~~~~e~ 847 (1311)
T TIGR00606 769 EQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSD-LDRTVQQVNQEKQEKQHELDTVVSKIEL 847 (1311)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766 3468899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHH
Q psy9513 873 GQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDA 952 (1491)
Q Consensus 873 l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~ 952 (1491)
++.+.+.++..+..++..+..+......+...+....+++..+.++...+..+...+..+..++.++...+..+..++..
T Consensus 848 l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1311)
T TIGR00606 848 NRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEE 927 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999888888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy9513 953 LKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSI 1032 (1491)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~i 1032 (1491)
+....+.....++..+..+......+..+...|..|...+.+..++.++.++..+...+..+..++..+..++..+++.+
T Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel 1007 (1311)
T TIGR00606 928 LISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhchHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhH--------------------HHHHHH
Q psy9513 1033 ANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLS-----EIMISDLTKYHHTLEN--------------------CVIKYH 1087 (1491)
Q Consensus 1033 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~l-----~~~~~~l~~~~~~L~~--------------------~~i~~~ 1087 (1491)
.++...++++.||+.|++...++..+..++..| +..+..+..++..|.. ++|..+
T Consensus 1008 ~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1008 DTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888 2333344333333222 778888
Q ss_pred HHHh-hHHhHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEeecc
Q psy9513 1088 SQKM-RSINRLI-REYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAAD 1165 (1491)
Q Consensus 1088 ~~e~-~~~~k~i-~~y~~~~~~~~~~~~~~~dl~~~~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~~ 1165 (1491)
..+| .+.|+++ .+|+..++++.+++++++||++|++|||+|+|+||+.||.+||+++++||+.||.|++|++|.|+++
T Consensus 1088 ~~eL~e~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~~~~~~~~~~i~~~~~ 1167 (1311)
T TIGR00606 1088 KKELREPQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSD 1167 (1311)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHhhcCCC
Confidence 8888 5789999 9999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred CCC---CCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH
Q psy9513 1166 VGT---GSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR 1242 (1491)
Q Consensus 1166 ~~~---~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~ 1242 (1491)
... .+...++|||.+++..+++.+++.+.+|+|+..++|+|||+
T Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~rl--------------------------------- 1214 (1311)
T TIGR00606 1168 ADENVSASDKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIRL--------------------------------- 1214 (1311)
T ss_pred CChHHHHHHHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHHH---------------------------------
Confidence 432 12346899998887777788999999999999999999999
Q ss_pred HhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-----hhcCceEEEEccCHHHHHHHhcccc-ceEEEE
Q psy9513 1243 IVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-----DQKNFQLIVITHDEEFIENLTAIDR-AYVVRI 1307 (1491)
Q Consensus 1243 l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-----~~~~~~~i~~thd~~~~~~~~~~~~-~~~~~l 1307 (1491)
+||++|+.+|++|+|||||+|||+.+. . ...|++||+||||++++..+|+..+ ++||++
T Consensus 1215 ------ala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1215 ------ALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred ------HHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999999999999987 1 1247899999999999999998877 999999
Q ss_pred ecCCCcceeeeec
Q psy9513 1308 VRDHKGLSDIHLR 1320 (1491)
Q Consensus 1308 ~~~~~~~~~i~~~ 1320 (1491)
.++..+.|+|.+.
T Consensus 1289 ~~~~~~~~~~~~~ 1301 (1311)
T TIGR00606 1289 KKNEDQCSEIVKC 1301 (1311)
T ss_pred eeccccCceeEee
Confidence 9999999999875
No 3
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=100.00 E-value=3.9e-58 Score=612.20 Aligned_cols=1093 Identities=19% Similarity=0.255 Sum_probs=577.5
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++.|.+.|||||++ ...|+|++++|+||||||||||||++||+||| |..+...+||+ .+ .+.++.
T Consensus 1 m~lk~i~l~gFKSF~~--~~~i~f~~~~t~IvGPNGSGKSNI~DAi~fVL-G~~s~k~lRa~------~~----~DlIf~ 67 (1163)
T COG1196 1 MYLKRIELKGFKSFAD--PTEINFSPGFTAIVGPNGSGKSNIVDAIRFVL-GEQSAKNLRAS------KM----SDLIFA 67 (1163)
T ss_pred CeeeEEEEECcccCCC--CeeeecCCCCeEEECCCCCchHHHHHHHHHHh-Ccchhhhhhcc------CC----cceeeC
Confidence 6788999999999984 68899999999999999999999999999999 66655554554 22 222333
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCC------ceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccc
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENND------TVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQ 155 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~------~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~ 155 (1491)
|.+ ..++...|.|.++|.|+++. +++|+|++.++ |.+. |++ ||..++.+
T Consensus 68 g~~-------~r~~~~~A~V~l~fdN~d~~~~~~~~ei~v~Rri~r~---g~S~--------Y~I---Ng~~~~~~---- 122 (1163)
T COG1196 68 GSG-------NRKPANYAEVELTFDNSDNTLPLEYEEISVTRRIYRD---GESE--------YYI---NGEKVRLK---- 122 (1163)
T ss_pred CCC-------CCCCCCceEEEEEEeCCCCcCCcccceEEEEEEEEEc---CCcE--------EEE---CCcEeeHH----
Confidence 322 33344579999999987732 47899999874 3222 344 48665442
Q ss_pred hhhHHhHhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHh
Q psy9513 156 ESVLEMCNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQAT 234 (1491)
Q Consensus 156 ~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~ 234 (1491)
++ ..+....|++...+ .|++||+..+.+. +|.+++.+|++++|+..|....+... ..+.....+
T Consensus 123 dI-~~l~~~~gi~~~~~---~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~-----------~~L~~~~~n 187 (1163)
T COG1196 123 DI-QDLLADSGIGKESY---SIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAE-----------RKLERTEEN 187 (1163)
T ss_pred HH-HHHHHhcCCCCCCC---ceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHH-----------HHHHHHHHH
Confidence 33 23445567776655 4678999998774 89999999999999999933222222 233444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 235 LNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKL--VQLTEKERNMSVMSTQYQTKKTERDMIQESCNELES 312 (1491)
Q Consensus 235 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~ 312 (1491)
++.+.+...+++.+++.++.+.+....+..+..++..++... .++.....++..+...+..+......+...
T Consensus 188 l~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~------ 261 (1163)
T COG1196 188 LERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE------ 261 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 555555555555556655555555555555555555444333 122222222222222222222222222222
Q ss_pred hhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q psy9513 313 SIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKL 392 (1491)
Q Consensus 313 ~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i 392 (1491)
+.+....+..+...+.++......++..+..+...+..+...+..+..+...+..........+......+
T Consensus 262 ---------~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1163)
T COG1196 262 ---------LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI 332 (1163)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333333333343444443444443333333444444444444444444444444444444444433333
Q ss_pred HHHHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 393 NNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIE 472 (1491)
Q Consensus 393 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~ 472 (1491)
......+.. .......+............................+..++..+..+..+++...+++.
T Consensus 333 ~~~~~~~~~------------~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (1163)
T COG1196 333 EALKEELEE------------RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400 (1163)
T ss_pred HHHHHHHHH------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333211 00111112222222222222222222211223334444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 473 GNKKDLTNVITQINEVNQ----SQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISI 548 (1491)
Q Consensus 473 ~~~~~~~~l~~~l~~l~~----~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~ 548 (1491)
.+..++..+..++..+.. ...++..+..++..+..++..+.. .+..+...++.+...+..++..+..+...+..
T Consensus 401 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1163)
T COG1196 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNE--ELEELEEQLEELRDRLKELERELAELQEELQR 478 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444444333 112233444444444444444444 44555555555555666666666666666665
Q ss_pred HHH-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC-----CCchhhHHHHHHHHHHHHHHHHHHHH-----H
Q psy9513 549 LQA-QNITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDM-----IPEENFKNSLDKALSSITFDINRIQE-----D 617 (1491)
Q Consensus 549 l~~-~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~-----~~~~~~~~aie~~L~~~~~~i~~~~~-----~ 617 (1491)
+.. ......++..+...... ...+..++......+.|++|. .++..|..||+.++|+..+++++.+. +
T Consensus 479 ~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~Gv~G~v~~li~v~~~y~~Aie~alG~~l~~vVV~~~~~a~~~ 557 (1163)
T COG1196 479 LEKELSSLEARLDRLEAEQRA-SQGVRAVLEALESGLPGVYGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKA 557 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHhccCCCccchHHHhcCcChHHHHHHHHHcccccCCeeeCChHHHHHH
Confidence 555 55566666666666655 555666665555557888883 77889999999999999999988763 9
Q ss_pred HHHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy9513 618 INAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIG 695 (1491)
Q Consensus 618 i~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 695 (1491)
|+++++. .|++|| |++.+++. ...... ..+|+.|++.+++.++++|..+..++++.+.++++++.|..
T Consensus 558 i~~lk~~~~gr~tflpl~~i~~~-----~~~~~~-----~~~g~~~~a~dli~~d~~~~~~~~~~l~~t~Iv~~l~~A~~ 627 (1163)
T COG1196 558 IEFLKENKAGRATFLPLDRIKPL-----RSLKSD-----AAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARR 627 (1163)
T ss_pred HHHHhhcCCCccccCchhhhccc-----cccccc-----cccchhHHHHHHhcCCHHHHHHHHHHhCCeEEecCHHHHHH
Confidence 9999997 999999 99999851 111101 15788999999999999999999999999999999999999
Q ss_pred HHhhcCCCCccc---cc------cCCCCCc-----h--hhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHh-hchH
Q psy9513 696 KLEENEPRCPLC---TR------FFESDYS-----V--PGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQE-LKPV 758 (1491)
Q Consensus 696 ~~~~~~~~~~~~---~~------~~~~~~~-----l--~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~ 758 (1491)
.+....+.+++| |. ++|||+. + ...+..+..++..+...+..+...+..++.....+.. +...
T Consensus 628 l~~~~~~~~riVTl~G~~~~~~G~~tGG~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1163)
T COG1196 628 LARKLRIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEEL 707 (1163)
T ss_pred HHHhcCCCceEEecCCcEEeCCeeeecCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998887888888 33 7788831 1 1134445555555555555555555555555544444 3333
Q ss_pred HHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 759 YENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALS-LQGDLTLLDQNIRELNTLQRELERQES 837 (1491)
Q Consensus 759 ~~~~~~l~~~ei~~l~~~l~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~-l~~~~~~l~~l~~~~~~l~~~i~~le~ 837 (1491)
...+..+.. ++..+..++..+..+...+...+..++.++..+......+.. +......+..+......+...+..+..
T Consensus 708 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 786 (1163)
T COG1196 708 RRQLEELER-QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEE 786 (1163)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333332 334444444444444444444444444443333333322222 222222222222222233333322221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q psy9513 838 KISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCE 917 (1491)
Q Consensus 838 ~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~ 917 (1491)
.... ....+..++.++......+..+..++.......+.+...+..+......+...+..
T Consensus 787 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~----------------- 846 (1163)
T COG1196 787 KRQA---LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDE----------------- 846 (1163)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 1111 11222233333333333333333333333333333333333333333333222222
Q ss_pred HHhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q psy9513 918 LEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQL 997 (1491)
Q Consensus 918 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l 997 (1491)
+...+..+...+..+..++..+...+..+...+...+.........++.. ...+..+..++..+.. .+
T Consensus 847 l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~~-----~~ 914 (1163)
T COG1196 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELREL-------ESELAELKEEIEKLRE-----RL 914 (1163)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH-----HH
Confidence 22222222222222222222222222222222222222211111111111 1111111111111100 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHhhhhhhhhchHh-hHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 998 AALRESVQKLNQRKEDIIAKRG---------VCERTINEINQSIANQSLEEIDLKN-NLTLLEKKEAVAKLNEELKLSEI 1067 (1491)
Q Consensus 998 ~~~~~~~~~l~~~~~~l~~~~~---------~~~~~l~~~~~~i~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~l~~l~~ 1067 (1491)
..+......+...+........ .+...+..++..+.. +.. | ..+..+|+.+..++..+..
T Consensus 915 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~-------lg~VN---~~Aiee~e~~~~r~~~l~~ 984 (1163)
T COG1196 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEA-------LGPVN---LRAIEEYEEVEERYEELKS 984 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHh-------ccCCC---hhHHHHHHHHHHHHHHHHH
Confidence 1111111111111111111100 122222222222222 211 2 3367788888888888877
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy9513 1068 MISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREY 1147 (1491)
Q Consensus 1068 ~~~~l~~~~~~L~~~~i~~~~~e~~~~~k~i~~y~~~~~~~~~~~~~~~dl~~~~~~l~~~~~~y~~~k~~~in~~~~e~ 1147 (1491)
.+.++......|.. .|..+..++...|.. -+..||.-|..+
T Consensus 985 ~~~dl~~a~~~l~~-~i~~~d~~~~~~f~~--------------------------------------~f~~In~~F~~i 1025 (1163)
T COG1196 985 QREDLEEAKEKLLE-VIEELDKEKRERFKE--------------------------------------TFDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHH
Confidence 77777666666553 222222222211211 145577788888
Q ss_pred HhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh
Q psy9513 1148 WTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE 1227 (1491)
Q Consensus 1148 ~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~ 1227 (1491)
+..++.|+.-.-+.+..+. + -++++.|.+.+||-....-++-|+|+++|+ +|++
T Consensus 1026 f~~L~~GG~a~L~l~~~dd-~-----l~~Giei~a~ppgK~~~~l~~LSGGEKsLt--AlAl------------------ 1079 (1163)
T COG1196 1026 FKELFGGGTAELELTEPDD-P-----LTAGIEISARPPGKKLQSLSLLSGGEKSLT--ALAL------------------ 1079 (1163)
T ss_pred HHHhCCCCeeEEEeCCCCc-h-----hhcCcEEEEECCCCCccchhhcCCcHHHHH--HHHH------------------
Confidence 9999988755333333221 2 234677888899988888888899999984 3343
Q ss_pred hhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhcc
Q psy9513 1228 FIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAI 1299 (1491)
Q Consensus 1228 ~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~ 1299 (1491)
-+|--.+.++|+.+|||.-++||..|+ ....+.|+|||||....... +
T Consensus 1080 ---------------------lFAi~~~~PaPf~vLDEVDAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~-a-- 1135 (1163)
T COG1196 1080 ---------------------LFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVITHRKGTMEA-A-- 1135 (1163)
T ss_pred ---------------------HHHHHhhCCCCeeeeccchhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHH-H--
Confidence 344444577899999999999999998 34468999999998776654 4
Q ss_pred ccceEEEEecCCCcceeeeecc
Q psy9513 1300 DRAYVVRIVRDHKGLSDIHLRS 1321 (1491)
Q Consensus 1300 ~~~~~~~l~~~~~~~~~i~~~~ 1321 (1491)
|+++.+.....|+|.+...+
T Consensus 1136 --d~l~GVtm~~~GvS~vvsv~ 1155 (1163)
T COG1196 1136 --DRLVGVTMQEKGVSKVVSVD 1155 (1163)
T ss_pred --HHHeeeEeecCCceEEEEee
Confidence 78777777665776666544
No 4
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=100.00 E-value=1.9e-52 Score=579.91 Aligned_cols=659 Identities=13% Similarity=0.160 Sum_probs=305.2
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
|++|.|.||++|+ ....|+|+.++++|+||||||||||++||+|||+|..+ ...||. .+ ...++.+
T Consensus 2 i~~l~l~nf~s~~--~~~~i~f~~~~~~i~G~NGsGKS~ildAi~~~l~~~~~-~~~r~~------~~----~~~i~~~- 67 (1164)
T TIGR02169 2 IERIELENFKSFG--KKKVIPFSKGFTVISGPNGSGKSNIGDAILFALGLSSS-KAMRAE------RL----SDLISNG- 67 (1164)
T ss_pred eeEEEEeCeeeEC--CeeEEeecCCeEEEECCCCCCHHHHHHHHHHHhccchh-hhhhhh------hH----HHhhccc-
Confidence 6789999999997 34678999999999999999999999999999976532 221222 11 0111100
Q ss_pred cccccCCCCCCccHHHHHHhhccccCCC---ceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHH
Q psy9513 84 NFVHDPRIGKKDETHAIVKLQCTCENND---TVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLE 160 (1491)
Q Consensus 84 ~~~q~~~~~~~~~~~~~v~~~~~~~~~~---~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~ 160 (1491)
..+.+...+.|.++|.+.++. .+.|.|++..+. .|.. ..+++ +|...+. . ++...
T Consensus 68 -------~~~~~~~~~~v~~~f~~~~~~~~~~~~i~r~~~~~~-~~~~-------~~~~~---n~~~~~~--~--~~~~~ 125 (1164)
T TIGR02169 68 -------KNGQSGNEAYVTVTFKNDDGKFPDELEVVRRLKVTD-DGKY-------SYYYL---NGQRVRL--S--EIHDF 125 (1164)
T ss_pred -------ccCCCCceEEEEEEEEcCCCCCCCcEEEEEEEEEcC-CCCc-------ceEEE---CCccccH--H--HHHHH
Confidence 012233456778888765543 488888876542 1220 11233 4754432 2 44333
Q ss_pred hHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHHH
Q psy9513 161 MCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKK 239 (1491)
Q Consensus 161 i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~~ 239 (1491)
+ ..+|++...|+ |++||+...++ +.|..++.+|++++|+..|...+......+++... .+..+.
T Consensus 126 l-~~~~~~~~~~~---~~~qg~~~~~~~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~-----------~l~el~ 190 (1164)
T TIGR02169 126 L-AAAGIYPEGYN---VVLQGDVTDFISMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEE-----------NIERLD 190 (1164)
T ss_pred H-HHcCCCcCcce---EEecchHHHHHCCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Confidence 3 33677777664 56799876544 58999999999999999997666665553333322 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9513 240 EADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFS 319 (1491)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 319 (1491)
+.+..+..++..++........+..+...+..+. +......+..+...+..+..++..+...+..+...+ ..+.
T Consensus 191 ~~~~~L~~q~~~l~~~~e~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l-~~~~ 264 (1164)
T TIGR02169 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYE-----GYELLKEKEALERQKEAIERQLASLEEELEKLTEEI-SELE 264 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 2222222222222222222222222222211110 111111122222222222222222222222222222 1111
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q psy9513 320 GDKAELQSKLNLFKINLDEKC-SELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADT 398 (1491)
Q Consensus 320 ~~~~el~~~l~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~ 398 (1491)
.....+...+..+...+..+. .++..++..+..+..++..+...+..+..++..+......+...+......+..+...
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~ 344 (1164)
T TIGR02169 265 KRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222222222211 1111122222222222222222222222222222222222222222222222222111
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 399 LCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNE---NTKQAEINALIVEKVELESKIKSFKQQIEGNK 475 (1491)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~---~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~~ 475 (1491)
+.. ....+..+...+......+..+...+.... ..+...+..++..+..+..++..+...+..+.
T Consensus 345 ~~~------------~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~ 412 (1164)
T TIGR02169 345 IEE------------ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQ 412 (1164)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 111111112222222222222211111111 11122222223333333333333333333333
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chh
Q psy9513 476 KDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA-QNI 554 (1491)
Q Consensus 476 ~~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~-~~~ 554 (1491)
.++..+...+..+.. .+..++..+..+..++..+.. .+..+...+..+...+..+...+..+..++..+.. ...
T Consensus 413 ~~l~~l~~~~~~~~~---~~~~l~~~~~~l~~~~~~~~~--~l~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~ 487 (1164)
T TIGR02169 413 EELQRLSEELADLNA---AIAGIEAKINELEEEKEDKAL--EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487 (1164)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222222221 122222233333333333222 22333333333333334444444444444443333 333
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHhcC---C--CCchhhHHHHHHHHHHHHHHHHHHH-----HHH
Q psy9513 555 TLAEIKSLKNRKESK------LADINLLKERHDRAFHLLFD---M--IPEENFKNSLDKALSSITFDINRIQ-----EDI 618 (1491)
Q Consensus 555 ~~~~l~~l~~~~~~~------~~~v~~~~~~~~~~l~~i~g---~--~~~~~~~~aie~~L~~~~~~i~~~~-----~~i 618 (1491)
+..++..+......+ ...++.++.. .+.|++| + .+++.|..|++.++|+..+.|++.. .+|
T Consensus 488 l~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~---~~~g~~g~l~dli~v~~~y~~Aie~~lg~~l~~ivv~~~~~a~~~i 564 (1164)
T TIGR02169 488 LQRELAEAEAQARASEERVRGGRAVEEVLKA---SIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAI 564 (1164)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHhc---CCCCceecHHHhcCcCHHHHHHHHHHhhhhhCCEEECCHHHHHHHH
Confidence 444444444443221 1444544421 1345555 2 7789999999999999998887744 489
Q ss_pred HHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy9513 619 NAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGK 696 (1491)
Q Consensus 619 ~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 696 (1491)
.+++.. +|++|| ||+.+++ ...+ ..+...+|..+++.+++.+++++..+..+++|.+.++++++.|...
T Consensus 565 ~~l~~~~~gr~tflpl~~~~~------~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~lg~~~v~~~l~~a~~~ 635 (1164)
T TIGR02169 565 ELLKRRKAGRATFLPLNKMRD------ERRD---LSILSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAARRL 635 (1164)
T ss_pred HHHHhcCCCCeeeccHhhcCC------CCCC---cccccCCCchHHHHHHccCcHHHHHHHHHHCCCeEEEcCHHHHHHH
Confidence 999988 999999 9987753 1000 0111224555566788999999999999999999999999999998
Q ss_pred HhhcCCCCccc---cc------cCCCCCc-------h----hhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHH
Q psy9513 697 LEENEPRCPLC---TR------FFESDYS-------V----PGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSL 752 (1491)
Q Consensus 697 ~~~~~~~~~~~---~~------~~~~~~~-------l----~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l 752 (1491)
+. .+++| |. .|+||+. + ...+..+...+..+...+..+...+..+...+..+
T Consensus 636 ~~----~~~~vTldG~~~~~~G~~tgG~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l 707 (1164)
T TIGR02169 636 MG----KYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDEL 707 (1164)
T ss_pred hc----CCcEEEeCceeEcCCcCccCCCCCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75 33445 33 6677741 1 12344555555555444444444444444444333
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=100.00 E-value=3.1e-46 Score=520.43 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=108.7
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCC----CceEeeCCCCCCCcHHHh
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASS----GKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~----g~~~~~~~~~~~~~~~~~ 79 (1491)
|.+|.|.||++|+ ....|+|++++++|+|||||||||||+||+|||++ .+|...| |.+.++|...
T Consensus 2 i~~l~~~nf~s~~--~~~~i~f~~~~~~i~G~NGsGKS~ll~ai~~~lg~-~~~~~~r~~~~~~~i~~g~~~-------- 70 (1179)
T TIGR02168 2 LKKLELAGFKSFA--DPTTINFDKGITGIVGPNGCGKSNIVDAIRWVLGE-QSAKALRGGKMEDVIFNGSET-------- 70 (1179)
T ss_pred eeEEEEeCccccC--CCeeEEecCCcEEEECCCCCChhHHHHHHHHHHcC-CchhhhhhccchhhhcCCCcc--------
Confidence 5689999999997 23578999999999999999999999999999944 4433222 2322232211
Q ss_pred hcCccccccCCCCCCccHHHHHHhhccccC-------CCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeecc
Q psy9513 80 SSGKNFVHDPRIGKKDETHAIVKLQCTCEN-------NDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGC 152 (1491)
Q Consensus 80 ~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~-------~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (1491)
.++...+.|.++|.+.+ ...++|.|++... |... +++ +|...+ .
T Consensus 71 -------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~r~~~~~---~~~~--------~~~---~~~~~~--~ 121 (1179)
T TIGR02168 71 -------------RKPLSLAEVELVFDNSDGLLPGADYSEISITRRLYRD---GESE--------YFI---NGQPCR--L 121 (1179)
T ss_pred -------------cCCCCeeEEEEEEecCCCCCCCCCCCeEEEEEEEeeC---CCce--------eeE---CCCccc--H
Confidence 11122345666676432 2348888988643 3211 223 253321 1
Q ss_pred ccchhhHHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHH
Q psy9513 153 LQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRD 218 (1491)
Q Consensus 153 ~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d 218 (1491)
. ++... ...+|++...+ .|++||+...++ ++|..+..+|+.++|+..|...++....+++
T Consensus 122 ~--~~~~~-l~~~~i~~~~~---~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~ 182 (1179)
T TIGR02168 122 K--DIQDL-FLDTGLGKRSY---SIIEQGKISEIIEAKPEERRAIFEEAAGISKYKERRKETERKLE 182 (1179)
T ss_pred H--HHHHH-HhccCCCcccc---hheecccHHHHHcCCHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 1 33332 33356665443 478999988766 4799999999999999999766555555333
No 6
>PRK02224 chromosome segregation protein; Provisional
Probab=100.00 E-value=9.4e-45 Score=480.99 Aligned_cols=193 Identities=13% Similarity=0.199 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy9513 558 EIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSK 637 (1491)
Q Consensus 558 ~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~~~~~~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~ 637 (1491)
.++.....+......++..+..+...+..+.+. ...+...+..+...+....+.+..+...+..+.+.+.....
T Consensus 311 ~l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~------~e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~ 384 (880)
T PRK02224 311 AVEARREELEDRDEELRDRLEECRVAAQAHNEE------AESLREDADDLEERAEELREEAAELESELEEAREAVEDRRE 384 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333221 23445555555555566666666666667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhh-hCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--cCCCCccccccCCCC
Q psy9513 638 TLRDQKRTLAELMDRMELV-LGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEE--NEPRCPLCTRFFESD 714 (1491)
Q Consensus 638 ~l~~~~~~l~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 714 (1491)
.+..++.++..+...+... +.+..++..+..+..++..+...+..+......+..++..++. ..++||+||++|.+.
T Consensus 385 ~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~~~ 464 (880)
T PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGS 464 (880)
T ss_pred HHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCCCc
Confidence 7777777766665555433 3346677889999999999999999999999999999999973 448999999999876
Q ss_pred CchhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHhhch
Q psy9513 715 YSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKP 757 (1491)
Q Consensus 715 ~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~ 757 (1491)
....++.++...+..++..+.+++..+..++..++.+.....
T Consensus 465 -~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~ 506 (880)
T PRK02224 465 -PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE 506 (880)
T ss_pred -chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888888888888888888888887776666433
No 7
>KOG0996|consensus
Probab=100.00 E-value=2.7e-43 Score=418.71 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=166.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHH
Q psy9513 419 KMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVL 498 (1491)
Q Consensus 419 ~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~l~~l 498 (1491)
.++.......+.++......+......+..++..++.++.....++.....++..++.++.-+...-+... .+...+
T Consensus 450 ~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~---~~~e~l 526 (1293)
T KOG0996|consen 450 EQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGL---KKVEEL 526 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 33333444444444444433333334444555555555555555555555555444444443333322222 123344
Q ss_pred HHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chhHHHHHHHHHHHHHHH---HHHHH
Q psy9513 499 QTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA-QNITLAEIKSLKNRKESK---LADIN 574 (1491)
Q Consensus 499 e~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~-~~~~~~~l~~l~~~~~~~---~~~v~ 574 (1491)
...+......+.+... .+..+...+..++.++.+....+..+..+...+.. ....++++..+++...+- .+-+.
T Consensus 527 k~~L~~~~~~~~e~~~--~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~ 604 (1293)
T KOG0996|consen 527 KGKLLASSESLKEKKT--ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLD 604 (1293)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 4444444444444444 44555555555555666666666665555555444 445556666555544333 44455
Q ss_pred HHHHHHhHH-HHHhcC---C--CCchhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHH-HHHhhHHHHHHH
Q psy9513 575 LLKERHDRA-FHLLFD---M--IPEENFKNSLDKALSSITFDIN----RIQEDINAKEKH-LYTLEA-NVSNSSKTLRDQ 642 (1491)
Q Consensus 575 ~~~~~~~~~-l~~i~g---~--~~~~~~~~aie~~L~~~~~~i~----~~~~~i~~lk~~-~~r~~~-~l~~~~~~l~~~ 642 (1491)
.++.-..+. +.|++| + .++..|..||.++..++..-++ .++.+|.+|++. +||+|| +|+.+....
T Consensus 605 al~r~kesG~i~Gf~GRLGDLg~Id~kYDvAIsTac~~LdyiVVdt~e~aq~cI~fl~~~nLgraTFi~LDki~~~~--- 681 (1293)
T KOG0996|consen 605 ALMRLKESGRIPGFYGRLGDLGAIDEKYDVAISTACARLDYIVVDTIETAQECINFLKKNNLGRATFIILDKIKDHQ--- 681 (1293)
T ss_pred HHHHHHHcCCCCccccccccccccchHHHHHHHHhccccceEEeccHHHHHHHHHHHHHcCCCceeEEehHhhhhhh---
Confidence 555433333 778887 2 8899999999997766655443 344599999999 999999 999987421
Q ss_pred HHHHHHHHHHHHhh--hCCCChHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc---cc------c
Q psy9513 643 KRTLAELMDRMELV--LGSKPFEDELDRVT-LELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC---TR------F 710 (1491)
Q Consensus 643 ~~~l~~~~~~l~~~--~~~~~~~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~ 710 (1491)
.++... +...+.--+|+.+. ++++.++-..+.-+.+++++++|..++.....++++| |. .
T Consensus 682 --------~~l~~i~tpenvPRLfDLv~~~d~~~r~aFYfaLrdtLV~d~LeQAtRiaygk~rr~RVvTL~G~lIe~SGt 753 (1293)
T KOG0996|consen 682 --------KKLAPITTPENVPRLFDLVKCKDEKFRPAFYFALRDTLVADNLEQATRIAYGKDRRWRVVTLDGSLIEKSGT 753 (1293)
T ss_pred --------hccCCCCCCCCcchHhhhhccCCHHHHHHHHHHHhhhhhhcCHHHHHHHhhcCCCceEEEEecceeeccccc
Confidence 111111 22233334677887 9999999999999999999999999998774448888 44 7
Q ss_pred CCCCC
Q psy9513 711 FESDY 715 (1491)
Q Consensus 711 ~~~~~ 715 (1491)
||||.
T Consensus 754 mtGGG 758 (1293)
T KOG0996|consen 754 MTGGG 758 (1293)
T ss_pred ccCCC
Confidence 78874
No 8
>PRK01156 chromosome segregation protein; Provisional
Probab=100.00 E-value=3e-43 Score=465.35 Aligned_cols=184 Identities=20% Similarity=0.317 Sum_probs=138.6
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|..|++.||++|+ ...|+|++++++|+||||||||||++||+|||||..|++. .. .+
T Consensus 1 M~i~~l~l~NF~s~~---~~~i~f~~gi~~I~G~NGsGKSsileAI~~aL~g~~~~~~--~~------~~---------- 59 (895)
T PRK01156 1 MIIKRIRLKNFLSHD---DSEIEFDTGINIITGKNGAGKSSIVDAIRFALFTDKRTEK--IE------DM---------- 59 (895)
T ss_pred CeEEEEEEeCccCCC---CceEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc--HH------HH----------
Confidence 678899999999886 3589999999999999999999999999999999754321 11 11
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHHh
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEM 161 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~i 161 (1491)
.+.+...+.|.+.|. .+|..|+|.|.+.+.++.+. +...++ .+|...+-.+. +++..|
T Consensus 60 ----------i~~~~~~~~V~l~f~-~~g~~y~i~R~~~~~~~~~~-------~~~~~~--~~g~~~~~~~~--~~~~~i 117 (895)
T PRK01156 60 ----------IKKGKNNLEVELEFR-IGGHVYQIRRSIERRGKGSR-------REAYIK--KDGSIIAEGFD--DTTKYI 117 (895)
T ss_pred ----------hhCCCCeEEEEEEEE-ECCEEEEEEEEEecCCCCCC-------ceEEEe--cCCeeccccHH--HHHHHH
Confidence 111122467888886 57788999999865422111 111122 45754333455 778888
Q ss_pred H-hhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHH
Q psy9513 162 C-NLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQ 232 (1491)
Q Consensus 162 ~-~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~ 232 (1491)
. .++|+++.+|.++||++||++.+++ +.|..++.+|+.+||++.|..++++++. ..+.+...+..+.
T Consensus 118 ~~~il~~~~~~f~~~i~~~Qg~~~~l~~~~~~~r~~~ld~~~~~~~~~~~~~~~~~----~~~~~~~ei~~le 186 (895)
T PRK01156 118 EKNILGISKDVFLNSIFVGQGEMDSLISGDPAQRKKILDEILEINSLERNYDKLKD----VIDMLRAEISNID 186 (895)
T ss_pred HHHHcCCCHHHhceeEEEeccchHHHHhCCHHHHHHHHHHHhChHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 7 8999999999999999999999887 4899999999999999999999999999 6665555554443
No 9
>PRK03918 chromosome segregation protein; Provisional
Probab=100.00 E-value=1e-42 Score=463.60 Aligned_cols=256 Identities=18% Similarity=0.278 Sum_probs=168.4
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|..|+|.||++|++ ..|+|++|+++|+||||||||||++||.|||||..+... +|. .+..+
T Consensus 1 m~i~~l~i~nf~~~~~---~~i~f~~g~~~i~G~nG~GKStil~ai~~~l~~~~~~~~-~~~---~~~~~---------- 63 (880)
T PRK03918 1 MKIEELKIKNFRSHKS---SVVEFDDGINLIIGQNGSGKSSILEAILVGLYWGHGSKP-KGL---KKDDF---------- 63 (880)
T ss_pred CeeEEEEEeCccCccC---ceEecCCCcEEEEcCCCCCHHHHHHHHHHHhcCCCCCCc-ccc---Chhhc----------
Confidence 6788999999999963 578999999999999999999999999999998533221 111 00011
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee-ccccchhhHH
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL-GCLQQESVLE 160 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-~~~q~~~~~~ 160 (1491)
.+.+...+.|.+.|. .+|..|+|.|.+..+ .. . +.. .+|.+... ... ++...
T Consensus 64 ----------~~~~~~~~~v~~~f~-~~~~~~~i~R~~~~~----~~-------~--~~~-~~~~~~~~~~~~--~~~~~ 116 (880)
T PRK03918 64 ----------TRIGGSGTEIELKFE-KNGRKYRIVRSFNRG----ES-------Y--LKY-LDGSEVLEEGDS--SVREW 116 (880)
T ss_pred ----------ccCCCCCEEEEEEEE-ECCeEEEEEEEEcCC----ce-------E--EEE-CCCCeeecccHH--HHHHH
Confidence 111122466777885 678889999988532 11 1 111 22432211 333 66777
Q ss_pred hHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHHHH
Q psy9513 161 MCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKE 240 (1491)
Q Consensus 161 i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~~~ 240 (1491)
|..+ ++..+|.+++|||||++.+++..|..|+++|+.+||++.|..+.+.++. ..+.+...+..+...+..+.
T Consensus 117 i~~~--~~~~~f~~~~~~~Qg~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~l~~l~- 189 (880)
T PRK03918 117 VERL--IPYHVFLNAIYIRQGEIDAILESDESREKVVRQILGLDDYENAYKNLGE----VIKEIKRRIERLEKFIKRTE- 189 (880)
T ss_pred HHHh--cCHHHhceeEEEeccchHHHhcCcHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-
Confidence 7775 4579999999999999999998999999999999999999999999999 88888877777777765553
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 241 ADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELE 311 (1491)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~ 311 (1491)
.....+..++..+..+ ..+..+..++..+......+......+......+..+..++..+...+..+.
T Consensus 190 ---~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~ 258 (880)
T PRK03918 190 ---NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258 (880)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344444444444 4444445555555444444444444444444444444444444444333333
No 10
>KOG0962|consensus
Probab=100.00 E-value=9e-44 Score=436.39 Aligned_cols=1093 Identities=17% Similarity=0.214 Sum_probs=553.7
Q ss_pred cCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCccccccCCCCCCccHHHHHHhhccccCCCceE
Q psy9513 35 ENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVC 114 (1491)
Q Consensus 35 ~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~ 114 (1491)
.||.|++++.....+.-.+.+||.. .|+.++..++. ..-....+.+.+.+- .+..+.
T Consensus 62 ~~FiHdpkIage~ev~AqvkL~f~~-~~G~~~~~~R~--------------------~qlt~k~~~~~~ktl--es~~~~ 118 (1294)
T KOG0962|consen 62 GSFIHDPKVAGETEVRAQVKLAFTD-VNGETMICTRT--------------------IQLTQKRTKMEFKTL--ESVIWA 118 (1294)
T ss_pred CCCCCCccccchhhhhheeeeeeec-CCCcEEEeehh--------------------hHHHHHHHHHHHHHH--hhhhee
Confidence 7899999999999888888888877 45556655443 111123344444443 222233
Q ss_pred EEEeEEEEeecCCccccccccceEeeecCCCceeee-----ccccchhhHHhHhhhCCcHhhhhcceeeccCCCCCCCCc
Q psy9513 115 VVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL-----GCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDE 189 (1491)
Q Consensus 115 i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-----~~~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~ 189 (1491)
+.+.-.. .-...|.++|..++..+ |++.+| +|||++.+||+ ..++.|...||++++..-|+.+.
T Consensus 119 ~~~g~k~---tlS~r~~d~d~~~~~~l---GVskAIl~~VIFcHQEdS~WPL-----sEp~~LKkkfD~IF~~tky~KAl 187 (1294)
T KOG0962|consen 119 INDGDRV---TLSGRSADLDAEMPLHL---GVSKAILENVIFCHQEDSTWPL-----SEPKNLKKKFDDIFSATKYTKAL 187 (1294)
T ss_pred eecCccc---cccchhhhhhHHHHHhc---CCcHHHHhhhheecccCCCCCC-----CChHHHHHHHHHHHHHHHHHHHH
Confidence 3311111 11223567888888776 998775 99999999997 55677888888888888888888
Q ss_pred chhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy9513 190 GKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSF-EELHNIEES 268 (1491)
Q Consensus 190 ~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~ 268 (1491)
|.-.+-.+|..+.+..|...+++++..+++... ... .+......+...+.+...+ .++..+...
T Consensus 188 d~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~----~~l-----------~i~~~~~ki~~~ke~v~e~e~e~~~~~~~ 252 (1294)
T KOG0962|consen 188 DSLKKLRKDQSQEVKTKKQELEHLKTLKERAEV----LRL-----------NIHSGQRKIEKSKEEVSELENELGPIEAK 252 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-----------HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 888888899999999999999999983333222 222 2233333444444444444 445555555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 269 MKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNEL-ESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQE 347 (1491)
Q Consensus 269 l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l-~~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~ 347 (1491)
+..+.....++.....++..+..+...+..++..+...+..+ .... ..+.......++.+..........+..+..++
T Consensus 253 i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~-~~l~~~~~n~~~~~~~~~~~~~~~e~~~~~l~ 331 (1294)
T KOG0962|consen 253 IEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTD-EELGELLSNFEERLEEMGEKLRELEREISDLN 331 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555555556666666666666655555555522 2222 33444444455555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH------------------HHHHHhHcCCCCCCCCCC
Q psy9513 348 RLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTK------------------LNNLADTLCLDTTAKSQY 409 (1491)
Q Consensus 348 ~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~------------------i~~l~~~l~~~~~~~~~~ 409 (1491)
.+...+.....++......++.+...++.........+....-. +.++...- +
T Consensus 332 ~e~~~l~~~k~~~~~~~~~lq~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~----~----- 402 (1294)
T KOG0962|consen 332 EERSSLIQLKTELDLEQSELQAEAEFHQELKRQRDSLIQELAHQYQLDSVESLEFMAEVKKDFRNLILER----F----- 402 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH----h-----
Confidence 55555555555555566555555555554444444333321110 11110000 0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy9513 410 TPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNE----------NTKQA-EINALIVEKVELESKIKSFKQQIEGNK--- 475 (1491)
Q Consensus 410 ~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~----------~~~~~-~i~~l~~~l~~l~~~~~~~~~~l~~~~--- 475 (1491)
......+.++......+...+..+........ ..... +...+...+...+.....+...+....
T Consensus 403 --~~~~~~~~q~~k~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~E~k~l~~~~~~~e~s~~~~~~~~~r~~~~~ 480 (1294)
T KOG0962|consen 403 --GGLEDDIKQRKKDIAELETNALDLIKEITDREVSLEAQKRIKDEIKKLESKGLKDKSFQYEDSTDDLKKLDERLKEAE 480 (1294)
T ss_pred --hhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhHhhHHHHHHHHHHHH
Confidence 00111111111111111111111111111000 00000 111111111111111111111110000
Q ss_pred HHHHH------HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH-----------------
Q psy9513 476 KDLTN------VITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQR----------------- 532 (1491)
Q Consensus 476 ~~~~~------l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~----------------- 532 (1491)
..+.. .......+...+..+..++..+..+...+..+..... +...+.-....+
T Consensus 481 ~~~~s~~~~~~~~~l~e~i~~~q~~~~~l~~~~kk~~~~~~~~~~~~~---~~~~~~~~~k~~~~k~~~~~k~~~~~~~~ 557 (1294)
T KOG0962|consen 481 RLLESAEKNNDELALKEKIAEKQNEMAQLEIQKKKLDEELDGLNKDAE---KRAKLELLKKKLRKKDAELRKIKSRLSDE 557 (1294)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhHHHHHHHHHHhcchh
Confidence 00000 0000000000111122222222222222222221111 111111111111
Q ss_pred ------------HHHHHHHHHHHHHHHHHHH-chhHHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHhcCCCCchhhHH
Q psy9513 533 ------------NELEDELCVIDAEISILQA-QNITLAEIKSLKNRKESKLADINLLKE-RHDRAFHLLFDMIPEENFKN 598 (1491)
Q Consensus 533 ------------~~le~~l~~l~~el~~l~~-~~~~~~~l~~l~~~~~~~~~~v~~~~~-~~~~~l~~i~g~~~~~~~~~ 598 (1491)
..++..+..++.++..++. ...+......+......+..+++.... ........+...+. ...
T Consensus 558 ~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sg---t~~ 634 (1294)
T KOG0962|consen 558 KGRAIEFPLTNDRSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESG---TID 634 (1294)
T ss_pred hhhhhccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhcc---chh
Confidence 1222222333333333222 222222333333333333333332111 11111111111100 012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHH-----HHHHHHHH
Q psy9513 599 SLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDE-----LDRVTLEL 673 (1491)
Q Consensus 599 aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~-----l~~~~~~~ 673 (1491)
++.. .+..+...|....+.++-+.|.-..+.+.++....+...+ +|.++|..+ +..+...+
T Consensus 635 ~~~~-------~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~~~~Cp-------lC~r~f~~eee~ef~~~l~~~i 700 (1294)
T KOG0962|consen 635 EYLD-------LLERLKGEIEKARKDLAMLQGRSALYRKFIEIACRSHCCP-------LCQRSFTTEEEVEFIKKLESKI 700 (1294)
T ss_pred hHHH-------HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhccCCC-------ccCCccchHHHHHHHHHHHHHH
Confidence 2222 2333333444445555556666666666655544321100 112222111 11111222
Q ss_pred HHHHHHH--------------HhhhhHHHHHHHHHHHHhhcCCCCccccccCCCCCchhhHHHHHHHHhhhchhhhhhhH
Q psy9513 674 KREQEEV--------------SMMTSTQYLFNSYIGKLEENEPRCPLCTRFFESDYSVPGLVNKLKTKIKEIPEQTNNKK 739 (1491)
Q Consensus 674 ~~~~~~l--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~ 739 (1491)
....+.+ ..+....+.+...+......-+ .....+..+...+.......+..+
T Consensus 701 ~s~p~~~~~~~~~l~k~~k~~e~l~~~~~~~~~~~~l~~~~i~-------------e~~~~l~~~~~el~~~~~~~e~~~ 767 (1294)
T KOG0962|consen 701 DSAPDKLEEAEVELSKEEKIFEILLKLKPTFGSIIKLIDKEIP-------------ELEKELQEVYEELGDLSEEEEDDE 767 (1294)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhh-------------HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 1111111 1111111112111111111100 123334444444444444444555
Q ss_pred HHHHHHHHHHHHHHhhchHHHHHHhhccCCcchHHHHHHHHHHHHHHH---HHHHHHHHHhhcCchhhHHHHHH-HHHHH
Q psy9513 740 THIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIET---KGELKKLKTALETPKTKEKTALS-LQGDL 815 (1491)
Q Consensus 740 ~~~~~l~~~~~~l~~l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~~---~~~~~~~e~~~~~~~~~~~~~~~-l~~~~ 815 (1491)
..+..+......+..+......+..... ++.....+++.....+... ....+++..+..........+.. +....
T Consensus 768 ~~l~~~~~~~~~~~~l~~~~~~~e~~~~-d~~~~~k~ie~~~s~l~~~~d~i~t~~E~~~Ek~~~~~~~~~~rke~E~~~ 846 (1294)
T KOG0962|consen 768 KLLDTIDAAEESAETLQTDVTVLERFLK-DLKLREKEIEELVSELDSSVDGIRTVDELRKEKSKKQESLDKLRKEIECLQ 846 (1294)
T ss_pred HHhcccchhHHhHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5455444444444444333334444434 5555555555555555431 12222222232222222222222 22221
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 816 TLLDQNIRELNTLQR---ELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKN 892 (1491)
Q Consensus 816 ~~l~~l~~~~~~l~~---~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~ 892 (1491)
.........++.+.. ........+.. .......+..++.++...+..+...+..+...+..+...+..+.+...
T Consensus 847 k~~~~~~~~i~~l~~~~~e~k~~~~~~~~---~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e 923 (1294)
T KOG0962|consen 847 KEVIEQEREISRLINLRNELKEEKQKIER---SLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKE 923 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHH
Confidence 222222222222222 22222222222 334445555556666666666666666655555555555555544444
Q ss_pred HHHHHH----HHHHhhhhhhhhHHHHHHHHHhhHHHH---------HHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHH
Q psy9513 893 DIHSKQ----LTVQGGAGMLKSLEDRKCELEGMDSVY---------QTELEELGRKVAPIETQLNLAQSELDALKKEHKK 959 (1491)
Q Consensus 893 ~l~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~~l---------~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 959 (1491)
++.... ...+.....+......+..+....... .+.+..++..+..+...+......+.......+.
T Consensus 924 ~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~ 1003 (1294)
T KOG0962|consen 924 ELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERN 1003 (1294)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 443331 111111122222222222211111000 1233333333333333333333333333333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh-
Q psy9513 960 KLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLE- 1038 (1491)
Q Consensus 960 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~i~~~~~~- 1038 (1491)
..+ .-.++...+++.++..++..++.+........++++...|......+......+.|+++++..++...+.+
T Consensus 1004 l~d-----nl~~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL 1078 (1294)
T KOG0962|consen 1004 LKD-----NLTLRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQEL 1078 (1294)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 222 22577778889999999999888777777889999999999999999999999999999999999999888
Q ss_pred -hhchHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHhHHHHHHHHHHHH-HHHHHHHH
Q psy9513 1039 -EIDLKN-NLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQ-LKLSEIMI 1115 (1491)
Q Consensus 1039 -~~~~~d-~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~L~~~~i~~~~~e~~~~~k~i~~y~~~~~~-~~~~~~~~ 1115 (1491)
+.+|+| ..+|+.... ++.++.....||..|+.+|+.+.|.+|..+|.++|++|+.||+.+|+ .|++.|.+
T Consensus 1079 ~~~~~kd~~~nyr~~~i-------e~~tt~~~~~DL~ky~~aLD~Aim~fHs~KMeeiN~iI~elW~~tYrG~Did~IrI 1151 (1294)
T KOG0962|consen 1079 REKDFKDAEKNYRKALI-------ELKTTELSNKDLDKYYKALDKAIMQFHSMKMEEINRIIRELWRKTYRGTDIDYIKI 1151 (1294)
T ss_pred hhhhhccHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcceEEE
Confidence 467888 444555444 46666777889999999999999999999999999999999999999 66666655
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEe-----eccCCCCCCCcccceeEEEEe-ccccc
Q psy9513 1116 -SDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISI-----AADVGTGSEKRRTYNYRVVQK-KNGIE 1188 (1491)
Q Consensus 1116 -~dl~~~~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I-----~~~~~~~~~~~~~yn~~~~~~-~~~~~ 1188 (1491)
+|-+. -....+.|+|++++.++.+..+|+++|++||.|.++.| ...|+. ||+|+++ .|||+
T Consensus 1152 rsD~~~----s~~~~rsYnyrVv~~kgd~eldMRGRcSAGQKvLAsliIRLALAEtf~s--------nCgvLALDEPTTN 1219 (1294)
T KOG0962|consen 1152 RSDSVS----SSDKRRTYNYRVVMVKGDTELDMRGRCSAGQKVLASLIIRLALAETFGS--------NCGVLALDEPTTN 1219 (1294)
T ss_pred eecccc----ccccccccceeEEEEechHHHHhccCccchHHHHHHHHHHHHHHHHHhh--------ccccccccCCccc
Confidence 34222 11335789999999999999999999999999666554 444443 8889999 89999
Q ss_pred cccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHHhhhHHHHHH
Q psy9513 1189 QDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRIVRDHKALAE 1252 (1491)
Q Consensus 1189 ~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l~~~~~~~a~ 1252 (1491)
+|..|++|+|. .| +-||++ |+.|+|||++|||||+.|...++...+. |||++.++--.+..
T Consensus 1220 LD~~niesLa~-~L-~~II~~-rr~q~nfqLiVITHDE~fv~~i~~~~~~e~~yr~~kd~~~~s~ 1281 (1294)
T KOG0962|consen 1220 LDRENIESLAK-AL-SRIIEE-RRRQRNFQLIVITHDEDFVQLLGRSAYPEYFYRVKKDESQISM 1281 (1294)
T ss_pred cCHhHHHHHHH-HH-HHHHHH-HhhccCcceeeeehHHHHHHHhhhcccchheeeecccchhcce
Confidence 99999999998 66 567775 8999999999999999999999999876 88888665444433
No 11
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.3e-40 Score=433.23 Aligned_cols=192 Identities=25% Similarity=0.336 Sum_probs=146.6
Q ss_pred CcccceeeecccccCCCCcceEE--eeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVR--FQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~--f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|.+.+|.|+||+||. ..+|. |..|+++|+|||||||||||+||+|||||..|+.. .+.++..+
T Consensus 1 M~i~~L~L~Nf~S~~---~~~~~~~f~~gi~lI~G~nGsGKSSIldAI~~ALyG~~~~~~----~~~~~~~i-------- 65 (908)
T COG0419 1 MKILRLRLKNFRSFK---DIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALYGKTPRLG----AFSLDDLI-------- 65 (908)
T ss_pred CCCeeeehccccccc---ccceeecCCCCeEEEECCCCCcHHHHHHHHHHHHcCCCCCcc----chhhhHHH--------
Confidence 667899999999997 34455 88889999999999999999999999999988652 11122111
Q ss_pred hcCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhH
Q psy9513 80 SSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVL 159 (1491)
Q Consensus 80 ~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~ 159 (1491)
...... +.|.+.|. .+|..|.|.|.+.++++.+. .... ... .+|..+..... +++.
T Consensus 66 ------------~~g~~~-~~V~l~F~-~~g~~Y~i~R~~~r~~~~~~-----~~~~--~~~-~~g~~~~~~~~--~v~~ 121 (908)
T COG0419 66 ------------RAGEKS-ASVELEFE-VNGKKYRIEREFRRGRGQST-----GSLQ--IIE-VDGERIADGKK--DVNE 121 (908)
T ss_pred ------------hcCCcc-EEEEEEEE-ECCEEEEEEeeeccccCCCc-----cchh--hcc-cCcchhhhhhh--hHHH
Confidence 222233 78899999 89999999999776532111 1111 121 34555555666 8999
Q ss_pred HhHhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHh
Q psy9513 160 EMCNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLN 236 (1491)
Q Consensus 160 ~i~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~ 236 (1491)
.|+.++|++.++|.++||||||++.+++. .|.+++.+|+++||+..|.+....++. ..+..+..++.+...+.
T Consensus 122 ~i~~llgld~~~f~~~v~l~QGe~~~fl~~~~~er~~il~~l~~l~~~e~~~~~l~e----~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 122 KIEELLGLDKDTFTRSVYLPQGEFDAFLKSKPKERKEILDELFGLEKYEKLSELLKE----VIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHhCCCHHHHhHHheeccHhHHHHHhcCcHHHHHHHHHHhCchhHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999885 689999999999999999999999988 77766655555554444
No 12
>KOG0964|consensus
Probab=100.00 E-value=6.1e-40 Score=380.92 Aligned_cols=597 Identities=16% Similarity=0.191 Sum_probs=329.4
Q ss_pred CcccceeeecccccCCCCcceEE-eeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCC-CCceEeeCCCCCCCcHHHh
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVR-FQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGAS-SGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~-f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~-~g~~~~~~~~~~~~~~~~~ 79 (1491)
|.|+.+.|+||+||. +.+.|+ |++...+|||.||||||+++.||+|||.+.+..-.. .-...+|.+
T Consensus 1 MyIk~ViI~GFrSYr--d~tvv~~fSph~NvIVGrNGSGKSNFF~AIrFVLSDey~hLk~E~R~gLlHEG---------- 68 (1200)
T KOG0964|consen 1 MYIKQVIIKGFRSYR--DETVVDPFSPHHNVIVGRNGSGKSNFFHAIRFVLSDEYSHLKREERQGLLHEG---------- 68 (1200)
T ss_pred CceEEeeeccchhhc--cccccCCCCCCcceEecCCCCCchhhHHHhhhhcccchhhcCHHHHhhhhhcC----------
Confidence 678899999999997 335554 898999999999999999999999999987755420 001122211
Q ss_pred hcCccccccCCCCCCccHHHHHHhhccccC------CCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccc
Q psy9513 80 SSGKNFVHDPRIGKKDETHAIVKLQCTCEN------NDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCL 153 (1491)
Q Consensus 80 ~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~------~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 153 (1491)
.++..+.|.|.++|.+++ +.++++.|++.... | -|+++ +..+ ..+
T Consensus 69 ------------sG~~V~sA~VEIvF~nsdnr~~~~k~Ev~lrRtVGlKK----------D--eY~lD---~k~V--tk~ 119 (1200)
T KOG0964|consen 69 ------------SGAMVMSASVEIVFDNSDNRLPRGKSEVSLRRTVGLKK----------D--EYFLD---NKMV--TKG 119 (1200)
T ss_pred ------------CCcceEEEEEEEEEeCcccccCCCCCeEEEEEeecccc----------h--hhhcc---cccc--cHH
Confidence 222334578888998764 34589999886431 1 12332 2111 112
Q ss_pred cchhhHHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHH
Q psy9513 154 QQESVLEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQ 232 (1491)
Q Consensus 154 q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~ 232 (1491)
++-. +.+.-|++.+ ||.+.++||.....- +....+-+++.+++|+..| + .++
T Consensus 120 --evvn-LLESAGFSrs--NPYyIV~QGkI~~La~akD~eRL~LLkeVaGtrvY--------e----err---------- 172 (1200)
T KOG0964|consen 120 --EVVN-LLESAGFSRS--NPYYIVPQGKINELANAKDSERLELLKEVAGTRVY--------E----ERR---------- 172 (1200)
T ss_pred --HHHH-HHHhcCcccC--CCceEeechhhHHhhcCCcHHHHHHHHHhcccchh--------H----HhH----------
Confidence 3322 3344455444 788889999988654 4668889999999999999 5 444
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Q psy9513 233 ATLNYKKEADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTK-----KTERDMIQES 306 (1491)
Q Consensus 233 ~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l-----~~~~~~~~~~ 306 (1491)
++.-+.+.+++..-..+ ..+..++..|..++.+.+++ ..|+.+......+ ..++.++...
T Consensus 173 ----------eeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL----~~Yqkldk~rr~lEYtiYdrEl~E~~~~ 238 (1200)
T KOG0964|consen 173 ----------EESLKIMEETKQKREKINELLKYIEERLRELEEEKEEL----EKYQKLDKERRSLEYTIYDRELNEINGE 238 (1200)
T ss_pred ----------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHhHhhhhhhhhhhHHHHHHHH
Confidence 34444566666666666 67777777777777777777 6666666665555 4455556666
Q ss_pred HHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy9513 307 CNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLND 386 (1491)
Q Consensus 307 ~~~l~~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~ 386 (1491)
+..+.... .............+....+.+..+..++.+++..+..+..+.+.+..+......+..+++..+..+..++.
T Consensus 239 l~~le~~r-~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 239 LERLEEDR-SSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQIT 317 (1200)
T ss_pred HHHHHHHH-hccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh
Confidence 66665554 33333333444445555555555555555555555555555555555555555555555555555555444
Q ss_pred HHHHHHHHHHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHH
Q psy9513 387 TLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNE---NTKQAEINALIVEKVELESK 463 (1491)
Q Consensus 387 ~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~---~~~~~~i~~l~~~l~~l~~~ 463 (1491)
...+..+.. ...++.+...+.+...++....-.++... +.+..+|..++.....+...
T Consensus 318 ~n~q~r~~~-------------------l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~K 378 (1200)
T KOG0964|consen 318 GNEQQRNLA-------------------LHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAK 378 (1200)
T ss_pred hhhhhhhhH-------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 332221111 11222222233333333332222222111 22333333333333222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-----------chHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH
Q psy9513 464 IKSFKQQIEGNKKDLTNVITQINEVNQ-----------SQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQR 532 (1491)
Q Consensus 464 ~~~~~~~l~~~~~~~~~l~~~l~~l~~-----------~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~ 532 (1491)
.... +++.....+-.-+++++..+.. ...++..++.++.+...++.++.. .+.+....+.++-...
T Consensus 379 qgr~-sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~--si~e~~~r~~~~~~~~ 455 (1200)
T KOG0964|consen 379 QGRY-SQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELES--SINETKGRMEEFDAEN 455 (1200)
T ss_pred hccc-cccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHhhhhhHHHHHHHHH
Confidence 1000 0011111111222222222221 111222223333333333333322 2222222222222233
Q ss_pred HHHHHHHHHHHHHHHHHHH-chhHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHH--HHHhcCC-----CCc
Q psy9513 533 NELEDELCVIDAEISILQA-QNITLAEIKSLKNRKESKLADINLLKE-----------RHDRA--FHLLFDM-----IPE 593 (1491)
Q Consensus 533 ~~le~~l~~l~~el~~l~~-~~~~~~~l~~l~~~~~~~~~~v~~~~~-----------~~~~~--l~~i~g~-----~~~ 593 (1491)
..+...++.+...-..+=. -..++..+..++.++......+...+. +.... +.|++|. .+|
T Consensus 456 ~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~~v~ 535 (1200)
T KOG0964|consen 456 TELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGIDSVRKIKEELKPNGVFGTVYELIKVP 535 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHHhcccccceehhhhhcCC
Confidence 3333333333322222212 233344444455554444333333322 11111 5677772 899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHH
Q psy9513 594 ENFKNSLDKALSSITFDINRIQED-----INAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDEL 666 (1491)
Q Consensus 594 ~~~~~aie~~L~~~~~~i~~~~~~-----i~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l 666 (1491)
+.|..+++..-|.+..+|++.++. +..+... .||+|| ||+.+.. +.. ........+|+- ..
T Consensus 536 ~~f~tavEvtaGNsLF~iVVdndevATkIl~~~n~m~~GrVTF~PLNrl~~------r~v-----~yp~~sdaiPli-~k 603 (1200)
T KOG0964|consen 536 NKFKTAVEVTAGNSLFNIVVDNDEVATKILRKLNKMKGGRVTFMPLNRLKA------RDV-----EYPKDSDAIPLI-SK 603 (1200)
T ss_pred HHHHhHHhhhcccceEEEEecccHHHHHHHHHHHhccCCeeEEeecccCch------hhc-----cCCCCCCccchH-HH
Confidence 999999999999999999998873 3555555 899999 9999876 221 111222334443 34
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc-cc------cCCCCC
Q psy9513 667 DRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC-TR------FFESDY 715 (1491)
Q Consensus 667 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~ 715 (1491)
..++++|+.+..+..+.+.++.+++.|...++...-.|-.. |+ .+|||.
T Consensus 604 l~y~p~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy 659 (1200)
T KOG0964|consen 604 LRYEPQFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGY 659 (1200)
T ss_pred hCcchhhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccc
Confidence 57889999999999999999999999999998765545444 44 778875
No 13
>KOG0018|consensus
Probab=100.00 E-value=2.3e-39 Score=383.24 Aligned_cols=709 Identities=16% Similarity=0.189 Sum_probs=342.4
Q ss_pred CCcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCce---EeeCCCCCCCcHH
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKN---FVHDPRIGKKDEA 77 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~---~~~~~~~~~~~~~ 77 (1491)
|+.+..|.|.||+||.|+ +.|.+...||+||||||||||++|+||.||| |.-++.. ||.. .|||..+
T Consensus 1 ~g~L~~lEieNFKSYkGh--~~iGPF~~FTaIIGPNGSGKSNlMDAISFVL-Gekss~L-R~~~lkdLIyg~~i------ 70 (1141)
T KOG0018|consen 1 MGRLLTLEIENFKSYKGH--QVIGPFDRFTAIIGPNGSGKSNLMDAISFVL-GEKSSHL-RVSHLKDLIYGKPI------ 70 (1141)
T ss_pred CCceeeeehhccccccCc--eeecCchhceeeeCCCCCchHHHHHHHHHHh-cCCCccc-ccchHHHHhcCCcc------
Confidence 788889999999999865 4444334799999999999999999999999 7655543 4542 2333322
Q ss_pred HhhcCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchh
Q psy9513 78 SASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQES 157 (1491)
Q Consensus 78 ~~~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~ 157 (1491)
.+.|.+.|.-.+|.....+|.+. + |.++|+ +| |..++. . +.
T Consensus 71 --------------------~~~v~l~Y~~~dg~~~~F~R~I~-~---G~seY~-ID----------ne~VT~--e--eY 111 (1141)
T KOG0018|consen 71 --------------------RKPVTLKYEEGDGETRRFTRAIN-G---GTSEYM-ID----------NEIVTR--E--EY 111 (1141)
T ss_pred --------------------CCchhheeecCCchhhhhhhhhc-C---CceeEE-Ec----------ceeccH--H--HH
Confidence 23344677777787788888775 2 554443 22 433322 0 11
Q ss_pred hHHhHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHH---HHHHHh
Q psy9513 158 VLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIK---AHYQAT 234 (1491)
Q Consensus 158 ~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~---~~~~~~ 234 (1491)
...+ ..+|+--.--|+.||.++.+.+.. ..|+++..+|++|+|+..|+..++.++..+..+.+...... +.+..+
T Consensus 112 ~~eL-ekinIlVkARNFLVFQGdVE~IA~-k~PkElt~LFEEISgSiElK~EYeelK~E~~kAE~~t~~~~~kkk~I~aE 189 (1141)
T KOG0018|consen 112 LEEL-EKINILVKARNFLVFQGDVEKIAG-KNPKELTALFEEISGSIELKPEYEELKYEMAKAEETTTGNYKKKKSIAAE 189 (1141)
T ss_pred HHHH-hhcceeeeeeeEEEecChHHHHhc-cCHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 1111 223444455566666444444444 37999999999999999999999999997777666555433 222222
Q ss_pred HhHHH---HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 235 LNYKK---EADSKKQLIYNNTQKRD-QSF-EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNE 309 (1491)
Q Consensus 235 l~~~~---~~~~~~~~~l~~~~~~~-~~~-~~~~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 309 (1491)
....+ .+++.++...+...... ..+ =++..++..+..+.. ++..+.+++..+..........+..
T Consensus 190 kk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~----------els~~~~ei~~~~~~~d~~e~ei~~ 259 (1141)
T KOG0018|consen 190 KKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKAND----------ELSRLNAEIPKLKERMDKKEREIRV 259 (1141)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhH----------HHHHHhhhhHHHHhhhhHHHHHHHH
Confidence 22222 11111111111111111 111 122222222222222 2222222222222222222222211
Q ss_pred HH-------HhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q psy9513 310 LE-------SSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHK 382 (1491)
Q Consensus 310 l~-------~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~ 382 (1491)
.. ..+ ..+...+.+.+..+.. +.++=........+...+......+...+.........+..++..+...+
T Consensus 260 ~k~e~~ki~re~-~~~Dk~i~~ke~~l~e-rp~li~~ke~~~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~ 337 (1141)
T KOG0018|consen 260 RKKERGKIRREL-QKVDKKISEKEEKLAE-RPELIKVKENASHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVE 337 (1141)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhh-hhHHhhcchhhccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11 111 1111111222222222 11111111222333333333334444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHhHcC-CCCCCCCCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy9513 383 KLNDTLKTKLNNLADTLC-LDTTAKSQYTPEEGEGLIKMSQTTIDKY-LSDIKILERTFSDNENTKQAEINALIVEKVEL 460 (1491)
Q Consensus 383 ~~i~~~~~~i~~l~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l 460 (1491)
........+++...+... ... ..+.++ .....+..+.... ..++..+. .....-+..++.......++
T Consensus 338 ~~~~~fekei~~~~q~rg~~ln-----l~d~~~-~ey~rlk~ea~~~~~~el~~ln----~~~r~~~~~ld~~~~~~~el 407 (1141)
T KOG0018|consen 338 GAKEEFEKEIEERSQERGSELN-----LKDDQV-EEYERLKEEACKEALEELEVLN----RNMRSDQDTLDHELERRAEL 407 (1141)
T ss_pred HHHHHHHHHHHHHHhhccccCC-----cchHHH-HHHHHHHHHHhhhhHHHHHHHH----HHHHHHHHHHhhHHHHHHHH
Confidence 444444444444333111 000 000001 0011111000000 11111100 00011122222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q psy9513 461 ESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELC 540 (1491)
Q Consensus 461 ~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~ 540 (1491)
+.++..+...+..+... ...+...+..++..+..+.. ..+.+.........+..++...+.
T Consensus 408 E~r~k~l~~sver~~~~-----------------~~~L~~~i~s~~~~~~e~~~--d~~~l~~~~~~~~~~~~e~n~eL~ 468 (1141)
T KOG0018|consen 408 EARIKQLKESVERLDKR-----------------RNKLAAKITSLSRSYEELKH--DLDSLESLVSSAEEEPYELNEELV 468 (1141)
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhh--cHHHHHHHHhhhhhhHHHHHHHHH
Confidence 33333333333222222 12222222233333333333 333333333333344444444444
Q ss_pred HHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC----CCc--hhhHHHHHHHHHHHHHHHHHH
Q psy9513 541 VIDAEISILQAQNITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDM----IPE--ENFKNSLDKALSSITFDINRI 614 (1491)
Q Consensus 541 ~l~~el~~l~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~----~~~--~~~~~aie~~L~~~~~~i~~~ 614 (1491)
....++..+... .....- .......+......++|++|. +.| ..|..|+..+||...+.|++.
T Consensus 469 ~~~~ql~das~d--------r~e~sR---~~~~~eave~lKr~fPgv~GrviDLc~pt~kkyeiAvt~~Lgk~~daIiVd 537 (1141)
T KOG0018|consen 469 EVLDQLLDASAD--------RHEGSR---RSRKQEAVEALKRLFPGVYGRVIDLCQPTQKKYEIAVTVVLGKNMDAIIVD 537 (1141)
T ss_pred HHHHHHHhhhhh--------hcccHH---HHHHHHHHHHHHHhCCCccchhhhcccccHHHHHHHHHHHHhcccceEEec
Confidence 444444332210 000000 111111111222345666662 444 579999999999999988776
Q ss_pred HH-----HHHHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHH
Q psy9513 615 QE-----DINAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQ 687 (1491)
Q Consensus 615 ~~-----~i~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~ 687 (1491)
.+ ||.+++.+ ++-.|| ||+++.. .... .++....| .-+.-+...++.+|+.+..+.-|.+.++
T Consensus 538 te~ta~~CI~ylKeqr~~~~TFlPld~i~v------~~~~---e~lr~~~g-~rlv~Dvi~ye~e~eka~~~a~gn~Lvc 607 (1141)
T KOG0018|consen 538 TEATARDCIQYLKEQRLEPMTFLPLDSIRV------KPVN---EKLRELGG-VRLVIDVINYEPEYEKAVQFACGNALVC 607 (1141)
T ss_pred cHHHHHHHHHHHHHhccCCccccchhhhhc------Cccc---ccccCcCC-eEEEEEecCCCHHHHHHHHHHhccceec
Confidence 55 99999999 999999 9999976 3222 22222222 2223356677889999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCccc---cc------cCCCCCc-h---hhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHh
Q psy9513 688 YLFNSYIGKLEENEPRCPLC---TR------FFESDYS-V---PGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQE 754 (1491)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~-l---~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~ 754 (1491)
+....|..++=..+-++.+| |. .||||++ . +..++.|...-..+.+ ++.++..... .
T Consensus 608 ds~e~Ar~l~y~~~~r~k~valdGtl~~ksGlmsGG~s~~~wdek~~~~L~~~k~rl~e-------el~ei~~~~~---e 677 (1141)
T KOG0018|consen 608 DSVEDARDLAYGGEIRFKVVALDGTLIHKSGLMSGGSSGAKWDEKEVDQLKEKKERLLE-------ELKEIQKRRK---E 677 (1141)
T ss_pred CCHHHHHHhhhcccccceEEEeeeeEEeccceecCCccCCCcCHHHHHHHHHHHHHHHH-------HHHHHHHhhh---h
Confidence 99999999885554557777 32 7788863 1 3345555544433333 3333333111 2
Q ss_pred hchHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 755 LKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELER 834 (1491)
Q Consensus 755 l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~l~~~i~~ 834 (1491)
+......+..|.. .+..+..+++.+...+.....++..++.++....-.+..+.. .++.....+..|+.+++.
T Consensus 678 ~~~v~~~i~~le~-~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r------~l~~~e~~~~~L~~~~n~ 750 (1141)
T KOG0018|consen 678 VSSVESKIHGLEM-RLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKR------KLQNREGEMKELEERMNK 750 (1141)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3334445555555 666666666666666666666666666666655555444433 333444444444444444
Q ss_pred HHHhc
Q psy9513 835 QESKI 839 (1491)
Q Consensus 835 le~~l 839 (1491)
.+..+
T Consensus 751 ved~i 755 (1141)
T KOG0018|consen 751 VEDRI 755 (1141)
T ss_pred HHHHH
Confidence 44443
No 14
>KOG0933|consensus
Probab=100.00 E-value=8e-39 Score=373.90 Aligned_cols=642 Identities=13% Similarity=0.167 Sum_probs=322.9
Q ss_pred CcccceeeecccccCCCCcceE-EeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVV-RFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i-~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
|.|+.|.|.||+||+ ..++| +|++.|+||.|-||||||+||++||||| |.......|.. .+ .
T Consensus 1 M~IkeiiLDGFKSYa--~rTvI~~fDp~FNAITGlNGSGKSNILDsICFvL-GI~nl~~VRA~------nl----q---- 63 (1174)
T KOG0933|consen 1 MHIKEIILDGFKSYA--TRTVISGFDPQFNAITGLNGSGKSNILDSICFVL-GITNLSQVRAS------NL----Q---- 63 (1174)
T ss_pred Cchhhhhhcchhcce--eeeeccCCCcccchhhcCCCCCchHHHHHHHHHH-ccchHHHHHHH------HH----H----
Confidence 678899999999998 44444 7898899999999999999999999999 76433321111 00 0
Q ss_pred cCccccccCCCCCCccHHHHHHhhccccC------C----CceEEEEeEEEEeecCCccccccccceEeeecCCCceeee
Q psy9513 81 SGKNFVHDPRIGKKDETHAIVKLQCTCEN------N----DTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL 150 (1491)
Q Consensus 81 ~~~~~~q~~~~~~~~~~~~~v~~~~~~~~------~----~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~ 150 (1491)
.+.|-+ ...+-..|.|.++|+|.+ | .+++|+|.+... |+.. ++ .||...
T Consensus 64 -eLIyk~----GQAGiTkAsVsVvFdNtdk~~SP~G~E~h~EIsVtRqIv~g---G~~K--------yl---INGh~a-- 122 (1174)
T KOG0933|consen 64 -ELIYKN----GQAGITKASVSVVFDNTDKARSPLGYEHHDEISVTRQIVVG---GTNK--------YL---INGHLA-- 122 (1174)
T ss_pred -HHHHhc----CcccceeEEEEEEecCCCcccCCCCcccCCeeEEEEEEEec---Ccee--------EE---EcCeeC--
Confidence 000100 112234567777887654 2 249999999876 3322 23 346431
Q ss_pred ccccchhhHHhHhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHH
Q psy9513 151 GCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKA 229 (1491)
Q Consensus 151 ~~~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~ 229 (1491)
.+..+.. +...+|+ .+-||.+.+.||.+...|. +|.++..++++++|+..|...-+...+ .......+++
T Consensus 123 --~~~~vq~-lF~SVqL--NvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~A~k----tiekKetKlk 193 (1174)
T KOG0933|consen 123 --QNSKVQD-LFCSVQL--NVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEAAEK----TIEKKETKLK 193 (1174)
T ss_pred --chhHHHH-HHHHhcc--cCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHHHHH----HHHHHHHHHH
Confidence 1112222 2233344 5888899999999999885 899999999999999999665554444 3333444555
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH----------------HHHHHHHHHHHH
Q psy9513 230 HYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTE----------------KERNMSVMSTQY 293 (1491)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~----------------~~~~~~~l~~~~ 293 (1491)
.++..+. +++.-.+..++.+...+-++..+...++.+....-.++- ....+..+.+.+
T Consensus 194 Ei~~lL~------eeI~P~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~ 267 (1174)
T KOG0933|consen 194 EINTLLR------EEILPRLEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESL 267 (1174)
T ss_pred HHHHHHH------HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444 445555566666665555555555555555544433321 111111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9513 294 QTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGK 373 (1491)
Q Consensus 294 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ 373 (1491)
.....+++.+++.+..++......+......| ..++..++.........+.-....++....+...
T Consensus 268 ~k~~~ei~~le~~ikei~~~rd~em~~~~~~L--------------~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~ 333 (1174)
T KOG0933|consen 268 GKTDKEIESLEKEIKEIEQQRDAEMGGEVKAL--------------EDKLDSLQNEITREETSLNLKKETLNGEEEKLEE 333 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhchhhhhH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222222222222222222211111111111 1122222222222222222222222222222222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHH
Q psy9513 374 LERDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNE---NTKQAEI 450 (1491)
Q Consensus 374 l~~~~~~~~~~i~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~---~~~~~~i 450 (1491)
+...+......+.............+ .............+...+..++.+..-+.... ..++.++
T Consensus 334 i~~~i~e~~~~l~~k~~~~~~~~~~~------------~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql 401 (1174)
T KOG0933|consen 334 IRKNIEEDRKKLKEKEKAMAKVEEGY------------EKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQL 401 (1174)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHH
Confidence 22222222222222222222111111 01222223333444444444444443333222 2445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chHHHHHHHHHHHHHHHHHHHHhccCCh---hhHHH
Q psy9513 451 NALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQ----SQSTLQVLQTKLNRVNSEIDQLSKSLDP---DQLKN 523 (1491)
Q Consensus 451 ~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~----~~~~l~~le~~l~~~~~el~~l~~~~~~---~~l~~ 523 (1491)
...+..+......+....-.+..+..++.....++..... ....+..++.++.++..++..+.- +. +.|.+
T Consensus 402 ~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~--~~~~~e~l~q 479 (1174)
T KOG0933|consen 402 RDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY--KIGQEEALKQ 479 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHH
Confidence 5555555555555555544444444444443333333322 222344555566666666655544 22 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCC---CCchhhHHHH
Q psy9513 524 EIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDM---IPEENFKNSL 600 (1491)
Q Consensus 524 ~l~~~~~~~~~le~~l~~l~~el~~l~~~~~~~~~l~~l~~~~~~~~~~v~~~~~~~~~~l~~i~g~---~~~~~~~~ai 600 (1491)
....+...+..+...++.+..++... . -.|..-+.+. -.+...|+++. .-+..|..|+
T Consensus 480 ~~~~l~~~~~~lk~~~~~l~a~~~~~-------------~---f~Y~dP~~nf---drs~V~G~Va~Li~vkd~~~~tAl 540 (1174)
T KOG0933|consen 480 RRAKLHEDIGRLKDELDRLLARLANY-------------E---FTYQDPEPNF---DRSKVKGLVAKLIKVKDRSYATAL 540 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccc-------------c---cccCCCCccc---hHHHHHHHHHHHheeCcchHHHHH
Confidence 33333333333333332222222110 0 0000000000 00113344442 3445678999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHH-H-HHHHHH-HHHhhHHHHHHHHHHHHH-HHHHHH-hhhCCCChHHHHHHHHHHH
Q psy9513 601 DKALSSITFDINRIQEDINA--KEK-H-LYTLEA-NVSNSSKTLRDQKRTLAE-LMDRME-LVLGSKPFEDELDRVTLEL 673 (1491)
Q Consensus 601 e~~L~~~~~~i~~~~~~i~~--lk~-~-~~r~~~-~l~~~~~~l~~~~~~l~~-~~~~l~-~~~~~~~~~~~l~~~~~~~ 673 (1491)
+...|+...++++..+.+.. |.+ . ..|+|. ||+.+.+ ..++. ...... -.++-..++-.|+.++..+
T Consensus 541 e~~aGgrLynvVv~te~tgkqLLq~g~l~rRvTiIPLnKI~s------~~~s~~v~~~ak~v~~~~v~~al~Li~yd~~l 614 (1174)
T KOG0933|consen 541 ETTAGGRLYNVVVDTEDTGKQLLQRGNLRRRVTIIPLNKIQS------FVLSPNVLQAAKNVGNDNVELALSLIGYDDEL 614 (1174)
T ss_pred HHHhcCcceeEEeechHHHHHHhhcccccceeEEEechhhhh------ccCCHhHHHHHHHhcCchHHHHHHHhcCCHHH
Confidence 99999999999999986644 322 1 456776 8888765 22111 111111 1123334567799999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc---cc------cCCCCCc------hhh--HHHHHHHHhhhchhhhh
Q psy9513 674 KREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC---TR------FFESDYS------VPG--LVNKLKTKIKEIPEQTN 736 (1491)
Q Consensus 674 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~------l~~--~i~~l~~~l~~~~~~~~ 736 (1491)
.++..+..|.+.+++..+.|.+++-.-.-+||.| |+ .+|||+. |.. .+...+.++......++
T Consensus 615 ~~amefvFG~tlVc~~~d~AKkVaf~~~i~~rsVTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~ 694 (1174)
T KOG0933|consen 615 KKAMEFVFGSTLVCDSLDVAKKVAFDPKIRTRSVTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELE 694 (1174)
T ss_pred HHHHHHHhCceEEecCHHHHHHhhcccccccceeeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985544678878 44 5577752 111 13444444555555555
Q ss_pred hhHHHHHHHHHHH
Q psy9513 737 NKKTHIDQLCKQQ 749 (1491)
Q Consensus 737 ~~~~~~~~l~~~~ 749 (1491)
.+++++..++...
T Consensus 695 ~le~eL~~le~~~ 707 (1174)
T KOG0933|consen 695 ALERELKSLEAQS 707 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444433
No 15
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.1e-33 Score=376.21 Aligned_cols=203 Identities=16% Similarity=0.199 Sum_probs=147.8
Q ss_pred CcccceeeecccccCCCCcceEEeec--cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQR--PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~--~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|.+.+|+++||++|++ ...|+|+. ++++|+|||||||||||+||+|||||..|..+ +.....++ .
T Consensus 1 M~~~~L~l~nf~s~~~--~~~idF~~~~gl~~I~G~nGaGKSTildAI~~aL~G~~~~~~-~~~~~~~~--~-------- 67 (1042)
T TIGR00618 1 MKPLRLTLKNFGSYKG--THTIDFTALGPIFLICGKTGAGKTTLLDAITYALYGKLPRRS-EVIRSLNS--L-------- 67 (1042)
T ss_pred CeeeEEEEeCeeccCC--CceeeecCCCCeEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-ccccccch--h--------
Confidence 7788999999999973 35789988 79999999999999999999999999876543 11111111 1
Q ss_pred hcCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEee-ecCCCceeeeccccchhh
Q psy9513 80 SSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRK-IFATGVQKNLGCLQQESV 158 (1491)
Q Consensus 80 ~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~~~~~~q~~~~ 158 (1491)
...++..+.|.+.|. .+|..|.|.|.+....+.++... ....+.. +..+|.....+.. +++
T Consensus 68 ------------~~~~~~~~~v~l~F~-~~g~~y~~~r~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~--~~~ 129 (1042)
T TIGR00618 68 ------------YAAPSEAAFAELEFS-LGTKIYRVHRTLRCTRSHRKTEQ---PEQLYLEQKKGRGRILAAKKS--ETE 129 (1042)
T ss_pred ------------hcCCCCCeEEEEEEE-ECCEEEEEEEeeeeeccCCCCcc---hhhhhhhhcCCCCcccccchH--HHH
Confidence 222344566788885 77888999998876533222111 1111111 1022322112556 899
Q ss_pred HHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhH
Q psy9513 159 LEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNY 237 (1491)
Q Consensus 159 ~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~ 237 (1491)
..|..++|++++.|.++||++||++.+++ +.|.+++++|+.+||++.|....+.+++ ..++....+..+...+..
T Consensus 130 ~~i~~llGld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~----~~~~~~~~~~~l~~~~~~ 205 (1042)
T TIGR00618 130 EVIHDLLKLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFA----KKKSLHGKAELLTLRSQL 205 (1042)
T ss_pred HHHHHHhCCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998876 5799999999999999999999888888 777777777777666654
Q ss_pred HH
Q psy9513 238 KK 239 (1491)
Q Consensus 238 ~~ 239 (1491)
+.
T Consensus 206 ~~ 207 (1042)
T TIGR00618 206 LT 207 (1042)
T ss_pred cc
Confidence 43
No 16
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=100.00 E-value=1.2e-32 Score=362.27 Aligned_cols=203 Identities=15% Similarity=0.161 Sum_probs=145.4
Q ss_pred CcccceeeecccccCCCCcceEEee------ccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQ------RPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~------~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~ 75 (1491)
|++..|+++||.+|.+ ...|+|+ .++++|+|||||||||||+||+|+|||..|... ++..... .+
T Consensus 1 Mk~~~l~~~nf~s~~~--~~~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~~r~~-~~~~~~~--~~---- 71 (1047)
T PRK10246 1 MKILSLRLKNLNSLKG--EWKIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLN-NVSQSQN--DL---- 71 (1047)
T ss_pred CcceEEEeecceeEcC--CceEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCCCCcc-ccccchh--hh----
Confidence 6677899999999963 3578886 249999999999999999999999999876422 1110000 11
Q ss_pred HHHhhcCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccc
Q psy9513 76 EASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQ 155 (1491)
Q Consensus 76 ~~~~~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~ 155 (1491)
...+...+.|.+.|. .+|..|.|.|++.+..+.|..... .....++...+|....-+..
T Consensus 72 ----------------~~~~~~~~~v~~~F~-~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~-- 130 (1047)
T PRK10246 72 ----------------MTRDTAECLAEVEFE-VKGEAYRAFWSQNRARNQPDGNLQ--APRVELARCADGKILADKVK-- 130 (1047)
T ss_pred ----------------hhCCCcceEEEEEEE-ECCeEEEEEeehhhcccCCCCccc--cccceeeEcCCCCeeccCch--
Confidence 223344577888894 677889999876654322222221 11122221123422222556
Q ss_pred hhhHHhHhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHh
Q psy9513 156 ESVLEMCNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQAT 234 (1491)
Q Consensus 156 ~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~ 234 (1491)
+++..|..++|++++.|.++|+++||+|..++. +|++++++|+++||+..|......++. ..++....+..+...
T Consensus 131 ~v~~~i~~llgl~~~~F~~~v~l~QG~f~~fl~a~~~eR~~il~~l~g~~~y~~~~~~l~e----r~k~~~~~l~~l~~~ 206 (1047)
T PRK10246 131 DKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFE----QHKSARTELEKLQAQ 206 (1047)
T ss_pred HHHHHHHHHhCCCHHHhhhheeeccccHHHHHhCChHHHHHHHHHHhCcHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 888999999999999999999999999998774 799999999999999999999999998 666666666666666
Q ss_pred HhHH
Q psy9513 235 LNYK 238 (1491)
Q Consensus 235 l~~~ 238 (1491)
+..+
T Consensus 207 l~~~ 210 (1047)
T PRK10246 207 ASGV 210 (1047)
T ss_pred HcCC
Confidence 6543
No 17
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=9.2e-32 Score=364.17 Aligned_cols=506 Identities=17% Similarity=0.235 Sum_probs=346.9
Q ss_pred chhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHhhchHHHHHHhhccCCcchHHHHHHHHHHHHHHHH--HHHHH
Q psy9513 716 SVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETK--GELKK 793 (1491)
Q Consensus 716 ~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~~~--~~~~~ 793 (1491)
.++..+.++...+..+...++++...+..+...++.+..+.+....+.++.. ++..++.+++.+..++.... ..+++
T Consensus 748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~-ei~~l~~qie~l~~~l~~~~~~~s~~e 826 (1311)
T TIGR00606 748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQM-ELKDVERKIAQQAAKLQGSDLDRTVQQ 826 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccccccCCHHH
Confidence 3567788888888888888888899899999998888888888888888887 89999999998888776422 24455
Q ss_pred HHHhhcCchhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 794 LKTALETPKTKEKTALS-LQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIES 872 (1491)
Q Consensus 794 ~e~~~~~~~~~~~~~~~-l~~~~~~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~ 872 (1491)
++.++......+..+.. +.........+..++..|+..+..+................++.++.++...+..+...+..
T Consensus 827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~ 906 (1311)
T TIGR00606 827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKD 906 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666554 55555556666666666644444433333221113345577777777888888888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhhhhhhhhHHHHHHHHHhh-----HHHHHHHHHHHhhhh
Q psy9513 873 GQTRLNSHNEKLQSLQKQKNDI-----------HSKQLTVQGGAGMLKSLEDRKCELEGM-----DSVYQTELEELGRKV 936 (1491)
Q Consensus 873 l~~~i~~~~~~i~~l~~~~~~l-----------~~~~~~~~~~~~~~~~l~~~i~~~~~~-----~~~l~~~l~~~~~~~ 936 (1491)
+..++..+...+..++..+.++ +..+..+...+..+..+...|..|... +..+...+..+...+
T Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~i 986 (1311)
T TIGR00606 907 AKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQL 986 (1311)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666666543 333344444444555555555555321 333444444333333
Q ss_pred cchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy9513 937 APIET-------QLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQ 1009 (1491)
Q Consensus 937 ~~l~~-------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~l~~ 1009 (1491)
..++. ++..+..++..+....+...+++ .+++...++..+..+|..++...+......++.+...+..
T Consensus 987 e~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL-----~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~ 1061 (1311)
T TIGR00606 987 EECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNL-----TLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE 1061 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 44444 44444444444443333333333 2444577889999999999988888889999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhh--hchHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy9513 1010 RKEDIIAKRGVCERTINEINQSIANQSLEE--IDLKN-NLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKY 1086 (1491)
Q Consensus 1010 ~~~~l~~~~~~~~~~l~~~~~~i~~~~~~~--~~~~d-~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~L~~~~i~~ 1086 (1491)
++..+......+.|++++++.+|...+.+- .+|++ ..+|+.... ++.++.+.++||..|+.+|+.+.|+|
T Consensus 1062 ~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryrka~i-------~~~~~~~~~~d~~~~~~~~~~~~~~~ 1134 (1311)
T TIGR00606 1062 NIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYREMMI-------VMRTTELVNKDLDIYYKTLDQAIMKF 1134 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988773 45666 344444443 56666777889999999999999999
Q ss_pred HHHHhhHHhHHHHHHHHHHHH-HHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcce-----e
Q psy9513 1087 HSQKMRSINRLIREYWTRIYQ-LKLSEIMI-SDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDID-----Y 1159 (1491)
Q Consensus 1087 ~~~e~~~~~k~i~~y~~~~~~-~~~~~~~~-~dl~~~~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~-----~ 1159 (1491)
|..+|..+|+.|+++|..+|. ++++.|.+ .|.+.-..++ .....|++..+..-+.+...+.+.|+.|+... .
T Consensus 1135 ~~~~~~~~n~~~~~~w~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lS~Gq~~~~~~~~r 1213 (1311)
T TIGR00606 1135 HSMKMEEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSAS-DKRRNYNYRVVMLKGDTALDMRGRCSAGQKVLASLIIR 1213 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccHHHHhhcCCCCChHHHHH-HHcCchHHHhccCCCCeecCCCCCCchhhhhHhhHhHH
Confidence 999999999999999999999 55555544 3321111222 33466778776555556667778899999752 2
Q ss_pred EEeeccCCCCCCCcccceeEEEEe-ccccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH
Q psy9513 1160 ISIAADVGTGSEKRRTYNYRVVQK-KNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA 1238 (1491)
Q Consensus 1160 i~I~~~~~~~~~~~~~yn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~ 1238 (1491)
+.|...+. .|++|+.+ +|+..+|..+...+..... . ++.. |..+.|++++||+||+.|+..+......
T Consensus 1214 lala~~~~--------~~~~il~lDEPt~~lD~~~~~~l~~~l~-~-~~~~-~~~~~~~~viiitHd~~~~~~~~~~~~~ 1282 (1311)
T TIGR00606 1214 LALAETFC--------LNCGIIALDEPTTNLDRENIESLAHALV-E-IIKS-RSQQRNFQLLVITHDEDFVELLGRSEYV 1282 (1311)
T ss_pred HHHHHHHh--------cCCCEEEeeCCcccCCHHHHHHHHHHHH-H-HHHh-hhhccCCeEEEEecCHHHHHHHhhcccc
Confidence 33332222 25668888 8999999999888776322 1 1111 3345699999999999999999877654
Q ss_pred -hHHHHhhh
Q psy9513 1239 -YVVRIVRD 1246 (1491)
Q Consensus 1239 -~~~~l~~~ 1246 (1491)
+||++.|+
T Consensus 1283 ~~~~~~~~~ 1291 (1311)
T TIGR00606 1283 EKFYRLKKN 1291 (1311)
T ss_pred ceeeeeeec
Confidence 66766554
No 18
>PF13514 AAA_27: AAA domain
Probab=99.98 E-value=2.2e-23 Score=279.29 Aligned_cols=126 Identities=24% Similarity=0.342 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEe-ccccccccccccchhhH
Q psy9513 1122 HHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQK-KNGIEQDMRNRCSAGQR 1200 (1491)
Q Consensus 1122 ~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~-~~~~~~~~~~~~~~~~~ 1200 (1491)
...|..++..|+....+.+...+.+|+..++.|. |..|..+++.... -+++. .+|..++...++++...
T Consensus 963 ~~lL~~a~~~~r~~~~p~vl~~As~~f~~LT~G~---Y~~l~~d~d~~~~-------~l~~~~~~G~~~~~~~LS~GT~d 1032 (1111)
T PF13514_consen 963 AELLEEAIERYREERQPPVLARASEYFSRLTGGR---YSRLRVDEDGDKP-------VLVVVRADGERVPVEELSRGTRD 1032 (1111)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC---CceeeeccccCcc-------cceEEecCCeEeeHHHhCHHHHH
Confidence 5678899999999999999999999999999998 7777766543210 02333 67888999999999998
Q ss_pred HHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHh-hcCCCe-eEEcCCCCCCChHhH---
Q psy9513 1201 VLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETF-SRNCGI-FALDEPTTNLDIKNA--- 1275 (1491)
Q Consensus 1201 ~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~-~~~~~~-l~lDEp~~~lD~~~~--- 1275 (1491)
.| ++.+|+ |++..+ ...+++ +|+|+||.++|....
T Consensus 1033 QL-YLALRL---------------------------------------A~~e~~~~~~~~lP~IlDD~fvnfDd~R~~~~ 1072 (1111)
T PF13514_consen 1033 QL-YLALRL---------------------------------------ALAELLAEQGEPLPFILDDIFVNFDDERARAA 1072 (1111)
T ss_pred HH-HHHHHH---------------------------------------HHHHHHHhCCCCCcEEeeCCccccCHHHHHHH
Confidence 99 999999 999988 556777 999999999998877
Q ss_pred -----HhhcCceEEEEccCHHHHHHHh
Q psy9513 1276 -----SDQKNFQLIVITHDEEFIENLT 1297 (1491)
Q Consensus 1276 -----~~~~~~~~i~~thd~~~~~~~~ 1297 (1491)
......+||+.||+.+++....
T Consensus 1073 l~~L~~ls~~~QVI~FTch~~l~~~a~ 1099 (1111)
T PF13514_consen 1073 LELLAELSRRRQVIYFTCHEHLVELAR 1099 (1111)
T ss_pred HHHHHHhccCCeEEEEeccHHHHHHHH
Confidence 2345689999999998887554
No 19
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.96 E-value=3.9e-20 Score=243.72 Aligned_cols=186 Identities=17% Similarity=0.156 Sum_probs=99.7
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
|.+|.+.||.+|. ...|+|+.++++|+|||||||||+|+||. |.+.|.. |.+.+++....+.....
T Consensus 7 i~~l~l~N~~~~~---~~~~~f~~~~~~l~G~NGaGKSTll~ai~----~~l~~~~--~~~~f~~~~~~~~~~~~----- 72 (1486)
T PRK04863 7 FRSLTLVNWNGFF---ARTFDLDELVTTLSGGNGAGKSTTMAAFV----TALIPDL--TLLHFRNTTEAGATSGS----- 72 (1486)
T ss_pred eeEEEEecccCcc---ceEEEecCCeEEEECCCCCCHHHHHHHHH----ccccCCC--CeEEECCcccccccccc-----
Confidence 6678888887775 35899999999999999999999999994 4445555 66666654331100000
Q ss_pred cccccCCCCCCc-cHHHHHHhhccccCCCceEEEEeEEEEeecC-CccccccccceEeeec----------------CCC
Q psy9513 84 NFVHDPRIGKKD-ETHAIVKLQCTCENNDTVCVVRSLLLSNKNG-KDNCATRDTTISRKIF----------------ATG 145 (1491)
Q Consensus 84 ~~~q~~~~~~~~-~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g-~~~~~~~~~~~~~~~~----------------~~g 145 (1491)
.+..+...+ ...+++.+.|.+..+...++-=.+... .| ... .+.. +|+.. .++
T Consensus 73 ---~~r~l~~~l~~~~~Y~~lef~d~~~~~~~~GV~l~~~--a~~~~~---~~~~-~F~i~~~~~~v~~~d~l~~~~~~~ 143 (1486)
T PRK04863 73 ---RDKGLHGKLKAGVCYAALDVVNSRGQRVLVGVRLQQV--AGRDRK---VDIK-PFAIQGLPDSVQPTDLLTETVNER 143 (1486)
T ss_pred ---cccchhcccCCCceEEEEEEEeCCceEEEEEEEEEee--cCCCCC---cCce-eEEEecCccccChHHHHHHhhccc
Confidence 000001000 112334445544333221111112111 11 000 0111 11100 011
Q ss_pred ceeeeccccchhhHHhHhhhCCcHhhhhcc-----eeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 146 VQKNLGCLQQESVLEMCNLIGVSKAILNNV-----IFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 146 ~~~~~~~~q~~~~~~i~~~~g~~~~~~~~~-----~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
...+.... ++...+....|+....|..+ +|++||.+..+|..++++.. |..+|+...|......+..
T Consensus 144 ~~~~~ti~--Elk~~i~e~~Gl~~~qF~ri~~Y~~~Ll~qG~f~~~L~a~~dR~k-F~kLf~taiy~~i~~~i~~ 215 (1486)
T PRK04863 144 QARVLTLN--ELKDKAAALEGVQFKQFNSITDYHSLMFDLGIIPRRLRSSSDRSK-FYRLIEASLYGGISSAITR 215 (1486)
T ss_pred ccccCCHH--HHHHHHHHhcCCceeeeccHHHHHHHHHHCCCchhhhhccchHHH-HHHHHHHHHHhhHHHhHHH
Confidence 11111233 55556666677665556553 56689998888766666666 8999999888655544444
No 20
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=3.3e-20 Score=216.61 Aligned_cols=122 Identities=18% Similarity=0.276 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchhhHH
Q psy9513 1122 HHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRV 1201 (1491)
Q Consensus 1122 ~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~ 1201 (1491)
..+++++++.|...+.+.+-...-+++..++.|. |-.|.+....... +|+...|+..+...++.+....
T Consensus 841 ~~vl~e~l~~~ke~rlP~vi~~A~~~F~hlT~G~---Yt~Iy~~e~~d~I--------~V~~~~G~~~~~~ELSqgT~EQ 909 (984)
T COG4717 841 VQVLEEALRLFKERRLPAVIQEASEFFMHLTDGR---YTGIYTQEDKDSI--------IVEHRAGGSKLAEELSQGTKEQ 909 (984)
T ss_pred HHHHHHHHHHHHhhhchHHHHHHHHHHhhccCCc---eeeeecccCCcee--------EEEecccccccHHHHhhhHHHH
Confidence 4789999999999999999999999999999999 8899877644322 5555899999999999999988
Q ss_pred HHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCe-eEEcCCCCCCChHhH-----
Q psy9513 1202 LACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGI-FALDEPTTNLDIKNA----- 1275 (1491)
Q Consensus 1202 ~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~-l~lDEp~~~lD~~~~----- 1275 (1491)
| +++||. +++..+...-++ +++|..|.++|+...
T Consensus 910 L-YlAlRf---------------------------------------ali~~~~~~~~LP~i~DD~fVhFD~~R~~r~~e 949 (984)
T COG4717 910 L-YLALRF---------------------------------------ALIHEVRTREPLPFIADDIFVHFDDERAKRMLE 949 (984)
T ss_pred H-HHHHHH---------------------------------------HHHhhhccCCCCCeeeccchhccCHHHHHHHHH
Confidence 8 999998 999999777677 999999999999887
Q ss_pred ---HhhcCceEEEEccCHHHHH
Q psy9513 1276 ---SDQKNFQLIVITHDEEFIE 1294 (1491)
Q Consensus 1276 ---~~~~~~~~i~~thd~~~~~ 1294 (1491)
....|.+||+.||+.+...
T Consensus 950 ~l~dls~~~QviYFTCHe~~~d 971 (984)
T COG4717 950 LLADLSEGNQVIYFTCHEHTCD 971 (984)
T ss_pred HHHHhccCCeEEEEEechhhhc
Confidence 3456899999999987653
No 21
>KOG0250|consensus
Probab=99.92 E-value=2.3e-18 Score=208.57 Aligned_cols=328 Identities=16% Similarity=0.246 Sum_probs=176.4
Q ss_pred cccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 3 LLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 3 ~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
.|.++++.||.... .-.|+|.++++.|+||||||||-||-||+.+|+|.-.... ||. .+ .+.
T Consensus 41 ~I~sI~L~NFMCHs---nL~IeFg~~vNfI~G~NGSGKSAIltAl~lglG~rAs~tn-Rgs------sl----K~l---- 102 (1074)
T KOG0250|consen 41 KIESIHLTNFMCHS---NLLIEFGPRVNFIVGNNGSGKSAILTALTLGLGGRASATN-RGS------SL----KDL---- 102 (1074)
T ss_pred eEEEEEEeeecccc---cceeccCCCceEeecCCCCcHHHHHHHHHHhhcccccccc-chh------hH----HHH----
Confidence 35678888885443 2478999999999999999999999999999966543333 554 12 111
Q ss_pred ccccccCCCCCCccHHHHHHhhccccC---------CCceEEEEeEEEEeecCCccccccccceEee-ecCCCceeeecc
Q psy9513 83 KNFVHDPRIGKKDETHAIVKLQCTCEN---------NDTVCVVRSLLLSNKNGKDNCATRDTTISRK-IFATGVQKNLGC 152 (1491)
Q Consensus 83 ~~~~q~~~~~~~~~~~~~v~~~~~~~~---------~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~-~~~~g~~~~~~~ 152 (1491)
...+.+.|.|.+++.|.+ |..++|.|++..+ |...+ .. + .+|..++-+.
T Consensus 103 ---------IK~G~~~A~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~---~S~~~--------~~~~-~~grvVStKk 161 (1074)
T KOG0250|consen 103 ---------IKDGCSSAKISITLSNSGLDAFKPEIYGNSIIIERTIRRS---SSTYY--------LLRS-ANGRVVSTKK 161 (1074)
T ss_pred ---------HhCCCcceEEEEEEecCCcccCChhhcCCeeEEEEeeccc---cchHH--------HHhh-ccCccccccH
Confidence 122334456666666533 4458999999865 22221 11 1 3455444455
Q ss_pred ccchhhHHhHhhhCCcHhhhhcceeeccCCCCCCCC--cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHH
Q psy9513 153 LQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLD--EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAH 230 (1491)
Q Consensus 153 ~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~--~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~ 230 (1491)
. |++. |...+|+ .+=||++|..|..+-.+|. .|+...++|-....+......+..+-. .+..
T Consensus 162 ~--dl~~-vv~~f~I--~veNP~~~lsQD~aR~FL~~~~p~dkYklfmkaT~L~qi~~~~~~~~~-----------~~~~ 225 (1074)
T KOG0250|consen 162 E--DLDT-VVDHFNI--QVENPMFVLSQDAARSFLANSNPKDKYKLFMKATQLEQITESYSEIME-----------SLDH 225 (1074)
T ss_pred H--HHHH-HHHHhCc--CCCCcchhhcHHHHHHHHhcCChHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHH
Confidence 5 7754 4455555 4458888988987776664 688888888777766655444444333 2222
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 231 YQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKL--VQLTEKERNMSVMSTQYQTKKTERDMIQESCN 308 (1491)
Q Consensus 231 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 308 (1491)
....+....+.+..+++++...+..+..+.....+.+.+..++.+. ..+.....++..+...+...+.....+...+.
T Consensus 226 ~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~ 305 (1074)
T KOG0250|consen 226 AKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIE 305 (1074)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333334444444444444444444444555555554444 23333334444444444444444444444444
Q ss_pred HHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy9513 309 ELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLND 386 (1491)
Q Consensus 309 ~l~~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~ 386 (1491)
.....+ ..+...+.+.+..+..+.........++..+.+.+..+..+...+...+......+.++......+++.|.
T Consensus 306 ~~~~k~-~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~ 382 (1074)
T KOG0250|consen 306 EKQGKI-EEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIA 382 (1074)
T ss_pred HHHHHH-HHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 33444444444444444444444444444444444444444444444444444333333333333333333
No 22
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.91 E-value=2.5e-22 Score=254.17 Aligned_cols=170 Identities=14% Similarity=0.203 Sum_probs=124.1
Q ss_pred CCcccceeeecccccCCCCcceEEeec-cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQR-PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~-~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
||+|.+|.++||++|++. ...|+|+. ++++|+||||||||||++||+|||||..++....+. .++
T Consensus 1 ~~~~~~l~l~nf~s~~~~-~~~i~f~~~g~~~i~G~NG~GKStll~aI~~~l~G~~~~~~~~~~-~~~------------ 66 (562)
T PHA02562 1 MLKFKKIRYKNILSVGNQ-PIEIQLDKVKKTLITGKNGAGKSTMLEALTFALFGKPFRDIKKGQ-LIN------------ 66 (562)
T ss_pred CceEEEEEEEcccccCCC-ceEEEEcCCCEEEEECCCCCCHHHHHHHHHHHHcCCCcCcCCHHH-hhc------------
Confidence 899999999999999731 25788985 699999999999999999999999996543320111 110
Q ss_pred hcCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee--ccccchh
Q psy9513 80 SSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL--GCLQQES 157 (1491)
Q Consensus 80 ~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~--~~~q~~~ 157 (1491)
......+.|.+.|. .+|..|.|.|.+.. +. ..++ .+|..... ... ++
T Consensus 67 -------------~~~~~~~~v~l~f~-~~~~~y~i~R~~~~----~~---------~~~~--~~~~~~~~~~~~~--~~ 115 (562)
T PHA02562 67 -------------SINKKDLLVELWFE-YGEKEYYIKRGIKP----NV---------FEIY--CNGKLLDESASSK--DF 115 (562)
T ss_pred -------------cCCCCcEEEEEEEE-ECCEEEEEEEeccC----Ce---------EEEe--cCCEEEeccccHH--HH
Confidence 01112245677785 56778999997631 11 1122 34544322 344 88
Q ss_pred hHHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 158 VLEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 158 ~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
...|..++|++...|..+|+.+||++..++ +.|.+++++|+.+||+..|......++.
T Consensus 116 ~~~i~~~~g~~~~~f~~~v~l~q~~f~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~ 174 (562)
T PHA02562 116 QKYFEQMLGMNYKSFKQIVVLGTAGYVPFMQLSAPARRKLVEDLLDISVLSEMDKLNKD 174 (562)
T ss_pred HHHHHHHHCCCHHHHhHHheeccCchhhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999999999999987665 4789999999999999999776555555
No 23
>KOG0161|consensus
Probab=99.90 E-value=2.5e-14 Score=188.32 Aligned_cols=247 Identities=17% Similarity=0.234 Sum_probs=126.6
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Q psy9513 318 FSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLAD 397 (1491)
Q Consensus 318 ~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~ 397 (1491)
+.....++...+.....++..+..+++..+..+..+.+.+..+...+..+.+.+..........++...++...+.++..
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555566666666666666666777777777777777776666666666666666666666666655
Q ss_pred HcCCCCCCCC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 398 TLCLDTTAKS------QYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQI 471 (1491)
Q Consensus 398 ~l~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l 471 (1491)
.+...+.... .....++...-..++......+..+..++..+......+...+++++.....+......+..++
T Consensus 1140 ~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~ 1219 (1930)
T KOG0161|consen 1140 ELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREI 1219 (1930)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5532100000 0011122333333444444445555555544444445555555555555555555555554444
Q ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 472 EGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA 551 (1491)
Q Consensus 472 ~~~~~~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~ 551 (1491)
..+..++..+......... ....++..+.+++.++..... ....+..+...+..+...+...+++....+..+..
T Consensus 1220 ~~l~~ev~~~~~~k~~~e~---~~k~~E~~l~elq~k~~~~~~--~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r 1294 (1930)
T KOG0161|consen 1220 ADLAAELEQLSSEKKDLEK---KDKKLEAQLSELQLKLDEQER--LRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSR 1294 (1930)
T ss_pred HHHHHHHHHHhhhhccHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHH
Confidence 4444444333322222221 123444555555555555544 33334445555555566666666666555555544
Q ss_pred -chhHHHHHHHHHHHHHHH
Q psy9513 552 -QNITLAEIKSLKNRKESK 569 (1491)
Q Consensus 552 -~~~~~~~l~~l~~~~~~~ 569 (1491)
......+++.++.++..-
T Consensus 1295 ~~~~~~~qle~~k~qle~e 1313 (1930)
T KOG0161|consen 1295 DKQALESQLEELKRQLEEE 1313 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 444555555555544433
No 24
>KOG0161|consensus
Probab=99.89 E-value=6.2e-13 Score=175.40 Aligned_cols=213 Identities=16% Similarity=0.212 Sum_probs=98.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhH
Q psy9513 319 SGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADT 398 (1491)
Q Consensus 319 ~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~ 398 (1491)
.....+.+.++..+...+.+....+..++.++.....++..+...+..+.....++......++..+.++...+.....+
T Consensus 928 e~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek 1007 (1930)
T KOG0161|consen 928 ERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEK 1007 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555555555555555555555555555555555555555555555555555555444443333
Q ss_pred cCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 399 LCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDN---ENTKQAEINALIVEKVELESKIKSFKQQIEGNK 475 (1491)
Q Consensus 399 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~---~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~~ 475 (1491)
... +......++..+..++..++.-....... ...+..++...+..+..+...+..+.+++....
T Consensus 1008 ~~~------------l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke 1075 (1930)
T KOG0161|consen 1008 AKS------------LNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKE 1075 (1930)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 211 22222223333333333332222211111 123334444444444444444444554444444
Q ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 476 KDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISI 548 (1491)
Q Consensus 476 ~~~~~l~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~ 548 (1491)
.++..+..+++.... .+..+...+.+++..+.++.. .+..-.....++.....++...+..+..++..
T Consensus 1076 ~El~~l~~k~e~e~~---~~~~l~k~i~eL~~~i~el~e--~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1076 SELSQLQSKLEDEQA---EVAQLQKQIKELEARIKELEE--ELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred HHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333332 234444555555555555555 44444444455555555555555555555544
No 25
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.87 E-value=1.8e-13 Score=184.21 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=31.6
Q ss_pred ccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCC
Q psy9513 14 NFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQG 58 (1491)
Q Consensus 14 ~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~ 58 (1491)
+|-+..+..|.++ |.|-|+|-||+|||||+++| -++||..|..
T Consensus 5 s~~~G~v~El~lD-G~t~i~GTNG~GKTTlLRli-p~FYGa~p~r 47 (1201)
T PF12128_consen 5 SHLPGVVAELKLD-GHTHICGTNGVGKTTLLRLI-PFFYGADPSR 47 (1201)
T ss_pred CCCCCceEEEecC-CceeeecCCCCcHHHHHHHH-HHhcCCCccc
Confidence 4533222466666 58889999999999999999 5566887643
No 26
>KOG0979|consensus
Probab=99.87 E-value=2.8e-15 Score=179.18 Aligned_cols=332 Identities=15% Similarity=0.187 Sum_probs=158.0
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
|..|.+.||-.|. ...+.|.+.+..|+||||||||||+-|||.+|+|. |..- |... .+ ..
T Consensus 22 IvrI~l~NF~Ty~---~~e~~pgpsLNmIiGpNGSGKSSiVcAIcLglgG~-Pk~l--GRak----~V------ge---- 81 (1072)
T KOG0979|consen 22 IVRIELHNFLTYD---HTEFLPGPSLNMIIGPNGSGKSSIVCAICLGLGGK-PKLL--GRAK----KV------GE---- 81 (1072)
T ss_pred eEEEEEeeeeeee---eeeecCCCceeeEECCCCCCchHHHHHHHHHcCCC-hhhc--cchh----HH------HH----
Confidence 5568888887774 34555555599999999999999999999999773 2222 3210 11 00
Q ss_pred cccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHHhHh
Q psy9513 84 NFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCN 163 (1491)
Q Consensus 84 ~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~i~~ 163 (1491)
| ...+...+.|.+.+... +...+|+|.+.+.+ .+. ++++ |..+ .|.++...+..
T Consensus 82 -y------IK~G~~~g~IEI~l~~~-~e~~~ItR~I~~~k---~S~--------y~iN---~~a~----t~s~i~elv~~ 135 (1072)
T KOG0979|consen 82 -Y------IKRGEDEGYIEIELKDK-DETLTITRLISRDK---ESK--------YFIN---DSAT----TKSEIEELVAH 135 (1072)
T ss_pred -H------HhcCCccceEEEEEecC-CCceEEEEEEeecC---Ccc--------eeec---cchh----hhHHHHHHHHH
Confidence 0 11112234555555533 56799999887652 111 2443 5432 21133333311
Q ss_pred hhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHHHHHH
Q psy9513 164 LIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEAD 242 (1491)
Q Consensus 164 ~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~~~~~ 242 (1491)
+...+=|..-|+||.....+.. .|-++-.--+.+.|...+......|.+ ++++.+.....+...- ..+
T Consensus 136 ---fNIQi~NLCqFLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h~eL~~----lr~~e~~Le~~~~~~~----~~l 204 (1072)
T KOG0979|consen 136 ---FNIQIDNLCQFLPQDKVKEFARLSPIELLVETEKAIGAEELLQYHIELMD----LREDEKSLEDKLTTKT----EKL 204 (1072)
T ss_pred ---HhcccCchhhhccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHHHHHHH----HHHHHHHHHHHHHHhH----HHH
Confidence 1224446677888877655442 466665555666676655555555555 4443332222222111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q psy9513 243 SKKQLIYNNTQKRDQSFEELHNIEESMKPINEKL--VQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSG 320 (1491)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 320 (1491)
..+++.+..+....+.+-+-..+...|+-+..+. -.+...-.+|..+...... +..++..+.... .++..
T Consensus 205 ~~L~~~~~~l~kdVE~~rer~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r-------~k~~~r~l~k~~-~pi~~ 276 (1072)
T KOG0979|consen 205 NRLEDEIDKLEKDVERVRERERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDR-------AKKELRKLEKEI-KPIED 276 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHH-------HHHHHHHHHHhh-hhhhh
Confidence 3333333334444444422222223333222222 1222222333333333333 333333333333 33333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhHcC
Q psy9513 321 DKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLC 400 (1491)
Q Consensus 321 ~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~l~ 400 (1491)
...+++........++..+...+..........-..+......+..+......+......+...+....+.+.++...+.
T Consensus 277 ~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 277 KKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred hhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444444444444444444444444444444444444444444444444444444444444445544444444444443
No 27
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.86 E-value=1.4e-14 Score=202.68 Aligned_cols=130 Identities=21% Similarity=0.294 Sum_probs=82.7
Q ss_pred HHHHHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhh
Q psy9513 1134 SQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISD 1213 (1491)
Q Consensus 1134 ~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 1213 (1491)
......+|.+|..+|..+|.|.+. ++.+....++.. -.+.|.+..|+.......-.|+|..
T Consensus 1035 ~~v~~~f~~~F~~lf~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~lS~g~~------------- 1095 (1179)
T TIGR02168 1035 KDTFDQVNENFQRVFPKLFGGGEA-ELRLTDPEDLLE-----AGIEIFAQPPGKKNQNLSLLSGGEK------------- 1095 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeE-EEEeCCCCcccc-----cCceEEEeCCCCccccccccCccHH-------------
Confidence 345677888888999998877754 333321111111 1233444444433222333444443
Q ss_pred cccceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHh----hcCCCeeEEcCCCCCCChHhH--------HhhcCc
Q psy9513 1214 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETF----SRNCGIFALDEPTTNLDIKNA--------SDQKNF 1281 (1491)
Q Consensus 1214 ~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~----~~~~~~l~lDEp~~~lD~~~~--------~~~~~~ 1281 (1491)
++++||++| +.+|+++||||||++||+.+. ....+.
T Consensus 1096 --------------------------------~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~ 1143 (1179)
T TIGR02168 1096 --------------------------------ALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNT 1143 (1179)
T ss_pred --------------------------------HHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCC
Confidence 334666665 467899999999999999877 223467
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecCCCcceeeee
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHL 1319 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 1319 (1491)
+||||||+++++ .+| |+++.+.....|.|.+..
T Consensus 1144 ~~i~~sh~~~~~-~~~----d~~~~~~~~~~~~~~~~~ 1176 (1179)
T TIGR02168 1144 QFIVITHNKGTM-EVA----DQLYGVTMQEKGVSKIVS 1176 (1179)
T ss_pred EEEEEEcChhHH-HHh----hhHeeeeeccCCceeEee
Confidence 899999999986 468 998888776556666654
No 28
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=99.86 E-value=6e-13 Score=179.73 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=37.3
Q ss_pred cceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhh-cCCC
Q psy9513 5 DQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFAL-TNEY 55 (1491)
Q Consensus 5 ~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l-~g~~ 55 (1491)
..+-|-|+-.|. ...|.|..++++|+|||||||||+|++|.|+| .|..
T Consensus 5 ~R~gliN~~~~~---~~~~~f~~g~~~~~G~NGsGKS~~lda~~~~ll~~~~ 53 (1353)
T TIGR02680 5 HRAGLVNLWYYD---EQEFWFRDGRLLLRGNNGAGKSKVLELLLPFLLDGKL 53 (1353)
T ss_pred eeEEEEEecccc---ceEEecCCCeEEEECCCCCcHHHHHHHHHHHHhcCCC
Confidence 345666665553 57899999999999999999999999976555 3544
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.85 E-value=9.9e-18 Score=212.04 Aligned_cols=271 Identities=13% Similarity=0.159 Sum_probs=149.7
Q ss_pred CcccceeeecccccCCCCcceEEeec----cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQR----PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~----~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
|.|.+|.|.||+.|.+. ..|+|.+ ++++|+||||||||||++||+|||||..+.+..+|...++.. +
T Consensus 1 M~i~~l~l~nf~~~~~~--~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~LyG~~~~~~~~~~~~y~~~-l------ 71 (650)
T TIGR03185 1 MIILQLTLENFGPYRGR--QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLALYGKRALCSGRGNKSYEQY-L------ 71 (650)
T ss_pred CcccEEEEeceEEEcCC--ceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccccccCCccCcHHHH-H------
Confidence 78889999999888643 4555553 399999999999999999999999998765442232110000 0
Q ss_pred HhhcCccccccCCCCCCccHHHHHHhhccccC-C--CceEEEEeEEEEeecCCccccccccceEeeecCCCceeeecccc
Q psy9513 78 SASSGKNFVHDPRIGKKDETHAIVKLQCTCEN-N--DTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQ 154 (1491)
Q Consensus 78 ~~~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~-~--~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q 154 (1491)
. +..+........+.|.+.|.... | ..|+|+|.|...++.+ ...+.++ .+|........
T Consensus 72 --~------~~~n~~~~~~~~~~V~l~f~~~~~~~~~~y~i~R~w~~~~k~~-------~~~l~v~--~~~~~~~~~~~- 133 (650)
T TIGR03185 72 --R------GLINRQAGKTNPASITLTFSVVEGGKRHEYTLVRSWHINNKDV-------KEKLTVY--KDDEEDDSLND- 133 (650)
T ss_pred --H------HHhcccCCCCCCeEEEEEEEEccCCceEEEEEEEEecCCCCCC-------CCcEEEE--ECCcccchhhH-
Confidence 0 00000111234567888887433 3 3488999986432211 1222222 23421111122
Q ss_pred chhhHHhHhhhCCcHhhhhcceeeccCCCCCCCCcc---hh-hHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHH
Q psy9513 155 QESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEG---KK-VKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAH 230 (1491)
Q Consensus 155 ~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~---~~-~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~ 230 (1491)
.++..|..+++. .+.. +|+||||.+..++.+ .. +++.+..++|++.|..+..++.. +.+.......
T Consensus 134 -~~~~~i~~ilp~--~~~~--~FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~~~~L~~dl~~----~~~~~~~~~~- 203 (650)
T TIGR03185 134 -IWDEFINELLPL--ELAD--LFFFDGEKIEALANPDRLASLLKEAIEVLLGLDLIDRLAGDLTN----VLRRRKKSEL- 203 (650)
T ss_pred -HHHHHHHHhCCH--hHHH--HhcccHHHHHHHhccccchHHHHHHHHHHhCcHHHHHHHHHHHH----HHHHHHhccc-
Confidence 444555554433 3333 477899988666543 33 66777888999888777777777 5554332221
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q psy9513 231 YQATLNYKKEADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQLTE--------KERNMSVMSTQYQTKKTERD 301 (1491)
Q Consensus 231 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~~~--------~~~~~~~l~~~~~~l~~~~~ 301 (1491)
...+...+++++..+.....+...+ ..+..++.++..+......+.. ...+...+..++..+..++.
T Consensus 204 ----~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~ 279 (650)
T TIGR03185 204 ----PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARK 279 (650)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 1112233344444444444444444 4444444444444444433322 23445566666666666666
Q ss_pred HHHHHHHHHHHh
Q psy9513 302 MIQESCNELESS 313 (1491)
Q Consensus 302 ~~~~~~~~l~~~ 313 (1491)
.....+..+...
T Consensus 280 e~~~~l~~l~~~ 291 (650)
T TIGR03185 280 ANRAQLRELAAD 291 (650)
T ss_pred HHHHHHHHHhcc
Confidence 666666655543
No 30
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.84 E-value=5.9e-13 Score=179.45 Aligned_cols=39 Identities=28% Similarity=0.214 Sum_probs=25.6
Q ss_pred cchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhh
Q psy9513 1195 CSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLT 1233 (1491)
Q Consensus 1195 ~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~ 1233 (1491)
.++.+..-+..+.++++..-.++|++||||.+..+....
T Consensus 1098 DAaLD~~Nv~r~~~~i~e~s~~sQFIvIThr~~~m~~ad 1136 (1163)
T COG1196 1098 DAALDDANVERVARLIKEMSKETQFIVITHRKGTMEAAD 1136 (1163)
T ss_pred hhhccHHHHHHHHHHHHHhCcCCeEEEEEcChHHHHHHH
Confidence 333333333555556566669999999999998766543
No 31
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.80 E-value=1.2e-11 Score=172.45 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchh
Q psy9513 1119 TKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAG 1198 (1491)
Q Consensus 1119 ~~~~~~l~~~~~~y~~~k~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~ 1198 (1491)
......|+..+......-+..||..|.++|..++ |.+. .+.+....++. ..++.|.+.+||.......-.|+|
T Consensus 1006 ~~~i~~l~~~~~~~f~~~f~~~~~~f~~~~~~l~-~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~lSgg 1078 (1164)
T TIGR02169 1006 LERIEEYEKKKREVFMEAFEAINENFNEIFAELS-GGTG-ELILENPDDPF-----AGGLELSAKPKGKPVQRLEAMSGG 1078 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCeE-EEEecCCCCcc-----cCCeEEEEEcCCCCCCcchhcCcc
Confidence 3334444444444455558889999999999999 6643 23332211111 123555555666544444556777
Q ss_pred hHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhh----cCCCeeEEcCCCCCCChHh
Q psy9513 1199 QRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFS----RNCGIFALDEPTTNLDIKN 1274 (1491)
Q Consensus 1199 ~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~----~~~~~l~lDEp~~~lD~~~ 1274 (1491)
++.+. +||.+|+ .+|++++|||||++||+.+
T Consensus 1079 e~~~~---------------------------------------------~la~~~~~~~~~~~~~~~lDE~~~~ld~~~ 1113 (1164)
T TIGR02169 1079 EKSLT---------------------------------------------ALSFIFAIQRYKPSPFYAFDEVDMFLDGVN 1113 (1164)
T ss_pred hHHHH---------------------------------------------HHHHHHHHHhcCCCCcEEecccccccCHHH
Confidence 76652 5555554 5789999999999999998
Q ss_pred H--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCCCcceeeeec
Q psy9513 1275 A--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHLR 1320 (1491)
Q Consensus 1275 ~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 1320 (1491)
+ ....+.+||+|||+..++ .+| |++|.+.....|+|.+...
T Consensus 1114 ~~~~~~~l~~~~~~~~~i~~t~~~~~~-~~~----d~~~~~~~~~~g~S~~~~~ 1162 (1164)
T TIGR02169 1114 VERVAKLIREKAGEAQFIVVSLRSPMI-EYA----DRAIGVTMRRNGESQVFGL 1162 (1164)
T ss_pred HHHHHHHHHHhcCCCeEEEEECcHHHH-Hhc----ceeEeEEEecCCeeEEEec
Confidence 7 223467899999998755 678 9999998876777777553
No 32
>KOG4674|consensus
Probab=99.79 E-value=2.6e-09 Score=138.84 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy9513 595 NFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRTL 646 (1491)
Q Consensus 595 ~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~~l~~~~~~l 646 (1491)
.+..++...+..+.+++......+..++..+..+...+..+.....++.+++
T Consensus 440 ~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv 491 (1822)
T KOG4674|consen 440 ETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQV 491 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777888888888888777777776666666666665555555554
No 33
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=1.3e-18 Score=174.11 Aligned_cols=89 Identities=18% Similarity=0.373 Sum_probs=81.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhH--HHH-----------------------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV--VRI-----------------------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~--~~l-----------------------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.+|++||.+++||+||+.+|+.. ..+ ++|||||||||+++|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 68999999999999999999732 211 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|||||+|||+.+ +...|.|+|+|||++.|+..++ |+++.++.|
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va----drviFmd~G 212 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA----DRVIFMDQG 212 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh----heEEEeeCC
Confidence 999999999999998 5678999999999999999999 999999888
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=99.74 E-value=5.5e-09 Score=139.44 Aligned_cols=56 Identities=16% Similarity=0.065 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy9513 319 SGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKL 374 (1491)
Q Consensus 319 ~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l 374 (1491)
.-+.++++..+.+|..++.++..++..++.++..+...++.+....+.+....+..
T Consensus 434 ~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv 489 (1486)
T PRK04863 434 DLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEV 489 (1486)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 34667777777777777777777777777777777777777777777766666653
No 35
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=9.5e-18 Score=174.47 Aligned_cols=132 Identities=18% Similarity=0.241 Sum_probs=107.1
Q ss_pred cccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-H-----
Q psy9513 1173 RRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-V----- 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~----- 1241 (1491)
.+||=+++|++ .|+ +.+++..+..- .-.+||+||++.++|.+|+.+|+.+ .
T Consensus 41 GKSTLLriiAGL~~p~~G~V~~~g~~v~~p------------------~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 41 GKSTLLRLIAGLEKPTSGEVLLDGRPVTGP------------------GPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred CHHHHHHHHhCCCCCCCceEEECCcccCCC------------------CCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 56778888887 333 55555544221 3358999999999999999998732 1
Q ss_pred ---------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCc
Q psy9513 1242 ---------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNF 1281 (1491)
Q Consensus 1242 ---------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~ 1281 (1491)
++ |||||||||||+.+|++|+|||||++||..++ +...++
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~ 182 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRK 182 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCC
Confidence 11 89999999999999999999999999999998 667789
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecCCCcceeeeeccccccc
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHLRSLLSSR 1326 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~ 1326 (1491)
|+|+||||++++..++ ||+++|.++|..+-.+...+++.|+
T Consensus 183 TvllVTHdi~EAv~Ls----dRivvl~~~P~~i~~~~~i~l~rpR 223 (248)
T COG1116 183 TVLLVTHDVDEAVYLA----DRVVVLSNRPGRIGEELEIDLPRPR 223 (248)
T ss_pred EEEEEeCCHHHHHhhh----CEEEEecCCCcceeeEEecCCCCCc
Confidence 9999999999999999 9999999998555556666777666
No 36
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=5.7e-17 Score=171.44 Aligned_cols=126 Identities=16% Similarity=0.278 Sum_probs=106.2
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH-
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l- 1243 (1491)
+..+||-+|.+-+ +|+ +..|+.++..+....| |.+|+ .+|.|||+++|+...|+++|+ +|-.+
T Consensus 42 GAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L-----r~~R~-----~IGMIFQhFnLLssrTV~~NvA~PLeia 111 (339)
T COG1135 42 GAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAEL-----RQLRQ-----KIGMIFQHFNLLSSRTVFENVAFPLELA 111 (339)
T ss_pred CCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHH-----HHHHh-----hccEEeccccccccchHHhhhhhhHhhc
Confidence 4456676666555 454 7888888888887666 44343 589999999999999999997 76433
Q ss_pred ----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhhc
Q psy9513 1244 ----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQK 1279 (1491)
Q Consensus 1244 ----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~ 1279 (1491)
+||||+|||||+.+|++|++|||||+|||.+. ...-
T Consensus 112 g~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l 191 (339)
T COG1135 112 GVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191 (339)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999998 3455
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.||++|||.++++..+| |++.+|+.|
T Consensus 192 glTIvlITHEm~Vvk~ic----~rVavm~~G 218 (339)
T COG1135 192 GLTIVLITHEMEVVKRIC----DRVAVLDQG 218 (339)
T ss_pred CCEEEEEechHHHHHHHh----hhheEeeCC
Confidence 999999999999999999 999999988
No 37
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.68 E-value=6.7e-17 Score=164.71 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=104.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH--
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI-- 1243 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l-- 1243 (1491)
..+|+=++.+.+ .|+ +.+++.+++.+.+..+ + .|+ .++|++||.-.+|..|++++|+ +|.+-
T Consensus 45 sGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~-~-~ir--------~r~GvlFQ~gALFssltV~eNVafplre~~ 114 (263)
T COG1127 45 SGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL-Y-EIR--------KRMGVLFQQGALFSSLTVFENVAFPLREHT 114 (263)
T ss_pred cCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH-H-HHH--------hheeEEeeccccccccchhHhhheehHhhc
Confidence 456777777666 443 8999999999988665 2 222 2589999999999999999997 44210
Q ss_pred -----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhh
Q psy9513 1244 -----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQ 1278 (1491)
Q Consensus 1244 -----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~ 1278 (1491)
|+.|+|||||++.+|++|++||||+||||.+. ...
T Consensus 115 ~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~ 194 (263)
T COG1127 115 KLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDA 194 (263)
T ss_pred cCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999987 344
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
-|.|+|+||||++.+..+| |++++|.+|
T Consensus 195 lg~T~i~VTHDl~s~~~i~----Drv~~L~~g 222 (263)
T COG1127 195 LGLTVIMVTHDLDSLLTIA----DRVAVLADG 222 (263)
T ss_pred hCCEEEEEECChHHHHhhh----ceEEEEeCC
Confidence 5899999999999999999 999999887
No 38
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.67 E-value=1.3e-16 Score=166.80 Aligned_cols=127 Identities=18% Similarity=0.279 Sum_probs=103.6
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H--
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~-- 1242 (1491)
++.+||=+.++.+ .|+ +.+++.++..+.++.+ ...++..+|||||+++|++.||+.+|+..+ .
T Consensus 41 GSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~---------~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~ 111 (226)
T COG1136 41 GSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKEL---------AKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA 111 (226)
T ss_pred CCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHH---------HHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc
Confidence 4567888877776 444 5788888888887665 234455699999999999999999997421 0
Q ss_pred -------------------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hh
Q psy9513 1243 -------------------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQ 1278 (1491)
Q Consensus 1243 -------------------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~ 1278 (1491)
+ ++|||||||||+.+|++++.||||.+||..+. . ..
T Consensus 112 ~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~ 191 (226)
T COG1136 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKE 191 (226)
T ss_pred CCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHh
Confidence 0 68999999999999999999999999999998 2 34
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
.|.|+|+||||...+. .| ||++.+.+|.
T Consensus 192 ~g~tii~VTHd~~lA~-~~----dr~i~l~dG~ 219 (226)
T COG1136 192 RGKTIIMVTHDPELAK-YA----DRVIELKDGK 219 (226)
T ss_pred cCCEEEEEcCCHHHHH-hC----CEEEEEeCCe
Confidence 4889999999998776 67 9999998884
No 39
>KOG0996|consensus
Probab=99.67 E-value=1.8e-08 Score=123.45 Aligned_cols=177 Identities=14% Similarity=0.294 Sum_probs=109.5
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCC--CCCceEeeCCCCCCCcHHHhhc
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGA--SSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~--~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|..|.+.||+||.|... .-.|+..|++||||||||||+++++|.||| |.-...- .+-...||...
T Consensus 86 I~~i~~~NFKSYaG~~i-lGPFHksFtaIvGPNGSGKSNVIDsmLFVF-GfRA~kiR~~klS~LIh~S~----------- 152 (1293)
T KOG0996|consen 86 ITEIVVENFKSYAGKQI-LGPFHKSFTAIVGPNGSGKSNVIDSMLFVF-GFRASKIRSKKLSALIHKSD----------- 152 (1293)
T ss_pred ehhhhhhhhhhhcCcee-ecCCCCCceeeECCCCCCchHHHHHHHHHh-hhhHhHHhHHHHHHHHhccC-----------
Confidence 56789999999986433 236888899999999999999999999999 6422110 00111222110
Q ss_pred CccccccCCCCCCccHHHHHHhhcccc-----------CCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCE-----------NNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL 150 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~ 150 (1491)
..++--.|.|.++|+-. .|..++|+|+.++. |. ..|++ +|...+.
T Consensus 153 ----------~~~~l~SCsV~vhFq~iiD~~~~~~E~vp~s~~~ItRtA~~~---Ns--------SkY~I---ngk~as~ 208 (1293)
T KOG0996|consen 153 ----------GHPNLQSCSVEVHFQKIIDKPGGTYEVVPDSEFTITRTAFRD---NS--------SKYYI---NGKEASF 208 (1293)
T ss_pred ----------CCCCCcceeEEEeeeeeeccCCCceeecCCCeeEEEehhhhC---CC--------ceEeE---CCccccH
Confidence 11111225566666532 23347788877654 22 22344 3754322
Q ss_pred ccccchhhHHhHhhhCCcHhhhhcceeeccCC--CCCCCCcc-------hhhHHHHHHhhhhhhHHHHHHHHHHhHHHHh
Q psy9513 151 GCLQQESVLEMCNLIGVSKAILNNVIFCHQEN--SSWPLDEG-------KKVKEIFDEIFDATKYNKALESIKIQRDRLR 221 (1491)
Q Consensus 151 ~~~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e--~~~~l~~~-------~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~ 221 (1491)
. +|. .+...-||+-..-+|.|. ||| ++..+ +| ..+-+++++|.|+.+|...++.+-.+.+++.
T Consensus 209 --~--~V~-~lLk~~gIDleHNRFLIL--QGEVE~IA~M-KPk~~~e~d~GmLEYLEDIIGT~ry~~~I~~~~~rv~~L~ 280 (1293)
T KOG0996|consen 209 --K--DVT-KLLKSHGIDLEHNRFLIL--QGEVEQIAMM-KPKAQTENDEGMLEYLEDIIGTNRYKEPIEELMRRVERLN 280 (1293)
T ss_pred --H--HHH-HHHHhcCCCCccceeeee--hhhHHHHHhc-CCCCCCCCcchHHHHHHHHhcccccchhHHHHHHHHHhhh
Confidence 1 332 334455777777666665 666 55443 55 7788999999999999988887777666654
Q ss_pred hhhH
Q psy9513 222 KEIP 225 (1491)
Q Consensus 222 k~~~ 225 (1491)
-...
T Consensus 281 e~~s 284 (1293)
T KOG0996|consen 281 EDRS 284 (1293)
T ss_pred HHHH
Confidence 4443
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.66 E-value=2.2e-08 Score=124.08 Aligned_cols=220 Identities=18% Similarity=0.279 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChH---HHHHHHHHHHHHH
Q psy9513 600 LDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRTLAELMDRMELVLGSKPFE---DELDRVTLELKRE 676 (1491)
Q Consensus 600 ie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~l~~~~~~~~~~ 676 (1491)
+....+...-.|....+.++.....+..+...++.+...+..+...+......+...+...... ..|..+..+...+
T Consensus 369 ~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~ 448 (775)
T PF10174_consen 369 LQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERL 448 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555555666666666666666666666655555555432222221 2233333333333
Q ss_pred HHHHHhhhhHHHHHHHHHHHHhhcCCCCccccccCCCCCchhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHh-h
Q psy9513 677 QEEVSMMTSTQYLFNSYIGKLEENEPRCPLCTRFFESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQE-L 755 (1491)
Q Consensus 677 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-l 755 (1491)
...+... ...+... . ..........+..++..+..+...+.+....+..++.+...+.+ .
T Consensus 449 ~e~l~e~----------r~~~e~e-~--------~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~ 509 (775)
T PF10174_consen 449 QERLEEQ----------RERAEKE-R--------QEELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQ 509 (775)
T ss_pred HHHHHHH----------HHHHHHH-H--------HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhcc
Confidence 3322111 0000000 0 00000135556666666666666666666666666666655555 3
Q ss_pred chHHHHHHhhccCCcchHHHHHHHHHHHHHH------HHHHHHHHHHhhcCchhhHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy9513 756 KPVYENIMKLQDTDIPSLRSKLIELEENVIE------TKGELKKLKTALETPKTKEKTALS-LQGDLTLLDQNIRELNTL 828 (1491)
Q Consensus 756 ~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~------~~~~~~~~e~~~~~~~~~~~~~~~-l~~~~~~l~~l~~~~~~l 828 (1491)
......+..+.. .+......+..+..++.. ....+..++.............+. +......+..+..+....
T Consensus 510 ~K~~s~i~~l~I-~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~k 588 (775)
T PF10174_consen 510 EKKDSEIERLEI-ELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDK 588 (775)
T ss_pred chhhhHHHHHHH-HHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444444433 343344444444433322 222333333333333333333333 344444444445555555
Q ss_pred HHHHHHHHHhc
Q psy9513 829 QRELERQESKI 839 (1491)
Q Consensus 829 ~~~i~~le~~l 839 (1491)
..+|..|+..+
T Consensus 589 e~ki~~LekeL 599 (775)
T PF10174_consen 589 EKKIGELEKEL 599 (775)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 41
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.65 E-value=1.7e-16 Score=162.03 Aligned_cols=123 Identities=15% Similarity=0.210 Sum_probs=100.7
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH-
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l- 1243 (1491)
+..+||-++.|-. +| .+.+|+.++.+.-.-.| |. .+||+-|.-.+||+||+.+|+ ..+.+
T Consensus 37 GsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-----Rr--------~IGYviQqigLFPh~Tv~eNIa~VP~L~ 103 (309)
T COG1125 37 GSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-----RR--------KIGYVIQQIGLFPHLTVAENIATVPKLL 103 (309)
T ss_pred CCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-----HH--------hhhhhhhhcccCCCccHHHHHHhhhhhc
Confidence 3456666654433 44 37889988888765444 32 589999999999999999997 33222
Q ss_pred ------------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hh
Q psy9513 1244 ------------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SD 1277 (1491)
Q Consensus 1244 ------------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~ 1277 (1491)
++|||.+||||+.+|++|+|||||++|||.++ ..
T Consensus 104 ~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~ 183 (309)
T COG1125 104 GWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183 (309)
T ss_pred CCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH
Confidence 57999999999999999999999999999998 34
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.-|.|||+||||++++..++ |++.+|+.|
T Consensus 184 ~l~kTivfVTHDidEA~kLa----dri~vm~~G 212 (309)
T COG1125 184 ELGKTIVFVTHDIDEALKLA----DRIAVMDAG 212 (309)
T ss_pred HhCCEEEEEecCHHHHHhhh----ceEEEecCC
Confidence 45899999999999999999 999999877
No 42
>KOG4674|consensus
Probab=99.63 E-value=2.5e-07 Score=121.00 Aligned_cols=289 Identities=17% Similarity=0.217 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 283 ERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHT 362 (1491)
Q Consensus 283 ~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~ 362 (1491)
...|..+..++.....+++.+...+..+...+ ......+.+-...++.....+..+..+++.....+..++..+..+..
T Consensus 390 ys~~~~~qqqle~~~lele~~~~~l~s~~eev-~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~ 468 (1822)
T KOG4674|consen 390 YSKYSKLQQQLESLKLELERLQNILSSFKEEV-KQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKK 468 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555554 33333333344444444444455555555555555555555555555
Q ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhHcCCCCCCCC-CCCchhHHHH----------HHHHHHHHHHHHHH
Q psy9513 363 HINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKS-QYTPEEGEGL----------IKMSQTTIDKYLSD 431 (1491)
Q Consensus 363 ~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~l~~~~~~~~-~~~~~~~~~~----------~~~l~~~~~~~~~~ 431 (1491)
....+..+...+......+...+.-+-.+++.+..-.... ++.. .....+.... +.++...-..+...
T Consensus 469 ~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~-~~s~~~~~es~S~~iIse~Lv~F~nI~eLqekN~eLL~~ 547 (1822)
T KOG4674|consen 469 QLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKIT-VSSDSTENESDSEEIISERLVEFSNINELQEKNVELLNA 547 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cCccccccCccHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5555555555555555555555544444444443322221 1111 1111111111 12222222223333
Q ss_pred HHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------hH----
Q psy9513 432 IKILERTFSDNE--------NTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQS------QS---- 493 (1491)
Q Consensus 432 l~~l~~~~~~~~--------~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~~------~~---- 493 (1491)
+..+...++... ..++..+..+...+..+..........+..+..+...++..+...... .+
T Consensus 548 vR~Lae~lE~~E~~~~~~~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~ 627 (1822)
T KOG4674|consen 548 VRELAEKLEAAEKTQDKTLQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQ 627 (1822)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcc
Confidence 333333332222 233334444444444444444444444444444433332211111111 00
Q ss_pred -HHH-HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chhHHHHHHHHHHHHHHHH
Q psy9513 494 -TLQ-VLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA-QNITLAEIKSLKNRKESKL 570 (1491)
Q Consensus 494 -~l~-~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~-~~~~~~~l~~l~~~~~~~~ 570 (1491)
... .++..+.+++..+..... .-...+..++..+..+......+..++..+.. ..-...++..+...+..+.
T Consensus 628 t~~~~~~e~~l~qLe~~le~~~~-----E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K 702 (1822)
T KOG4674|consen 628 TEAPRAKEKRLRQLENELESYKK-----EKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTK 702 (1822)
T ss_pred cccchhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 124444555554443332 22233334445555555555555555555444 4445567788888888777
Q ss_pred HHHHHHHH
Q psy9513 571 ADINLLKE 578 (1491)
Q Consensus 571 ~~v~~~~~ 578 (1491)
.++..+..
T Consensus 703 ~e~~tL~e 710 (1822)
T KOG4674|consen 703 EEVETLEE 710 (1822)
T ss_pred HHHHHHHH
Confidence 77776663
No 43
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.60 E-value=2.9e-15 Score=147.61 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=101.1
Q ss_pred CCCCCCCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-h
Q psy9513 1166 VGTGSEKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-Y 1239 (1491)
Q Consensus 1166 ~~~~~~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~ 1239 (1491)
+|++ ...+||-+++++. .|+ +-.|+-++.+-...+. .++|+.|....||..||+.+|+ |
T Consensus 34 LG~N-GAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr--------------r~IGVl~~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 34 LGEN-GAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR--------------RKIGVLFGERGLYARLTARENLKY 98 (245)
T ss_pred EcCC-CCCchhHHHHHHHhccCCCceEEEeecccccChHHHh--------------hhcceecCCcChhhhhhHHHHHHH
Confidence 3444 2457888888776 444 4555544433333221 3699999999999999999997 6
Q ss_pred HHHH-----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------
Q psy9513 1240 VVRI-----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------- 1275 (1491)
Q Consensus 1240 ~~~l-----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------- 1275 (1491)
|.++ |||+|+||||++++|++++|||||+|||..+.
T Consensus 99 Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 99 FARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 6443 78999999999999999999999999999887
Q ss_pred HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
...+|.++|++||++..+..+| |+++++++|
T Consensus 179 ~k~egr~viFSSH~m~EvealC----Drvivlh~G 209 (245)
T COG4555 179 LKNEGRAVIFSSHIMQEVEALC----DRVIVLHKG 209 (245)
T ss_pred hhcCCcEEEEecccHHHHHHhh----heEEEEecC
Confidence 4566999999999999999999 999999998
No 44
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=6.3e-16 Score=162.79 Aligned_cols=126 Identities=13% Similarity=0.187 Sum_probs=102.9
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
+.+||-++.+-. +|+ +.+|+..++.+..+.| +.+|+. .++.+||.+.++|+.++.+|.-|. .
T Consensus 65 SGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~L-----r~~Rr~----~~sMVFQ~FaLlPhrtVl~Nv~fGLev~G 135 (386)
T COG4175 65 SGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAEL-----RELRRK----KISMVFQSFALLPHRTVLENVAFGLEVQG 135 (386)
T ss_pred CCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHH-----HHHHhh----hhhhhhhhhccccchhHhhhhhcceeecC
Confidence 345555443333 444 7889999999988777 455554 489999999999999999987441 1
Q ss_pred -----------------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcC
Q psy9513 1243 -----------------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKN 1280 (1491)
Q Consensus 1243 -----------------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~ 1280 (1491)
| |+|||.|||||+.+|++|+||||||+|||--+ ...-+
T Consensus 136 v~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~ 215 (386)
T COG4175 136 VPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215 (386)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC
Confidence 1 89999999999999999999999999999877 33457
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.||+|||||++++.+++ ||+..|.+|
T Consensus 216 KTIvFitHDLdEAlriG----~rIaimkdG 241 (386)
T COG4175 216 KTIVFITHDLDEALRIG----DRIAIMKDG 241 (386)
T ss_pred CeEEEEecCHHHHHhcc----ceEEEecCC
Confidence 89999999999999999 999999887
No 45
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.59 E-value=3e-13 Score=168.16 Aligned_cols=48 Identities=31% Similarity=0.496 Sum_probs=41.9
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
+..|+|+||+.|. ...|+|+.++++|+||||||||+|++||.|+++|.
T Consensus 2 l~~l~i~nf~~~~---~~~i~f~~g~~vitG~nGaGKS~ll~al~~~~g~~ 49 (563)
T TIGR00634 2 LTELRINNFALIR---VLTVEFERGLTVLTGETGAGKSMIIDALSLLGGQR 49 (563)
T ss_pred ceEEEEcceeeee---eeEEecCCCeEEEECCCCCCHHHHHHHHHHHhCcC
Confidence 4579999887774 46889999999999999999999999999999654
No 46
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1e-15 Score=161.42 Aligned_cols=124 Identities=19% Similarity=0.219 Sum_probs=100.0
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH---
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR--- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~--- 1242 (1491)
+..+||-+++|++ .|+ +.++.+-+-.... ....-.++||+||+..+|++||+.+|+-|.-
T Consensus 38 GaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~------------~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~ 105 (345)
T COG1118 38 GAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN------------LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR 105 (345)
T ss_pred CCcHHHHHHHHhCcCCCCCceEEECCEeccchhc------------cchhhcceeEEEechhhcccchHHhhhhhccccc
Confidence 4578999999998 343 6666663333322 1122356999999999999999999974421
Q ss_pred ----------------H-------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-h
Q psy9513 1243 ----------------I-------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-D 1277 (1491)
Q Consensus 1243 ----------------l-------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~ 1277 (1491)
+ +||||||||||+..|++|+|||||++||...+ . .
T Consensus 106 ~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~ 185 (345)
T COG1118 106 KERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD 185 (345)
T ss_pred ccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH
Confidence 0 68999999999999999999999999999887 2 3
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|.++||||.+++..+| |++++|++|
T Consensus 186 ~~~~ttvfVTHD~eea~~la----drvvvl~~G 214 (345)
T COG1118 186 RLGVTTVFVTHDQEEALELA----DRVVVLNQG 214 (345)
T ss_pred hhCceEEEEeCCHHHHHhhc----ceEEEecCC
Confidence 34999999999999999999 999999988
No 47
>PRK10869 recombination and repair protein; Provisional
Probab=99.58 E-value=4e-13 Score=164.69 Aligned_cols=47 Identities=32% Similarity=0.504 Sum_probs=41.2
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
+..|+|+||..|. ...|+|++++++|+||||||||+|++||.|+|+|
T Consensus 2 L~~L~I~nf~~i~---~~~i~f~~glnvitGetGaGKS~ildAi~~llG~ 48 (553)
T PRK10869 2 LAQLTISNFAIVR---ELEIDFQSGMTVITGETGAGKSIAIDALGLCLGG 48 (553)
T ss_pred ccEEEEcccccce---eeEEecCCCcEEEECCCCCChHHHHHHHHHHhCC
Confidence 4579999887774 4679999999999999999999999999999954
No 48
>PRK02224 chromosome segregation protein; Provisional
Probab=99.57 E-value=1.6e-08 Score=135.37 Aligned_cols=191 Identities=15% Similarity=0.215 Sum_probs=134.6
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|..|.|.||++|++ ..|+|++++++|+|||||||||||+||.|||||..|+. |. +. .+
T Consensus 1 M~i~~l~l~nf~~~~~---~~~~f~~g~~~i~G~Ng~GKStil~ai~~~l~g~~~~~---~~--~~--~~---------- 60 (880)
T PRK02224 1 MRFDRVRLENFKCYAD---ADLRLEDGVTVIHGVNGSGKSSLLEACFFALYGSKALD---DT--LD--DV---------- 60 (880)
T ss_pred CeEEEEEEECcccccc---eEEecCCCeEEEECCCCCCHHHHHHHHHHHhCCCcccc---cc--HH--HH----------
Confidence 6788999999999973 47889989999999999999999999999999976543 21 00 11
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHHh
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEM 161 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~i 161 (1491)
.+.....+.|.+.|. .+|..|.|.|++...+. +.. ....+.. +|....-+.. +++..|
T Consensus 61 ----------~~~~~~~~~v~~~f~-~~~~~~~i~r~~~~~~~-~~~-----~~~~~~~---~~~~~~~~~~--~~~~~i 118 (880)
T PRK02224 61 ----------ITIGAEEAEIELWFE-HAGGEYHIERRVRLSGD-RAT-----TAKCVLE---TPEGTIDGAR--DVREEV 118 (880)
T ss_pred ----------HhCCCCcEEEEEEEE-ECCEEEEEEEEEecCCC-Ccc-----cceeEEe---CCCccccChH--HHHHHH
Confidence 111123356788887 56778999998864321 100 0111111 1322111445 788899
Q ss_pred HhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHhHH
Q psy9513 162 CNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYK 238 (1491)
Q Consensus 162 ~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~~~ 238 (1491)
..++|++..+|.++||++||++.+++. .|++++++|+++||+..|......+.. .+..+......+...+..+
T Consensus 119 ~~llg~~~~~f~~~~~i~Qge~~~~l~~~p~~R~~ii~~l~~l~~~e~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 192 (880)
T PRK02224 119 TELLRMDAEAFVNCAYVRQGEVNKLINATPSDRQDMIDDLLQLGKLEEYRERASD----ARLGVERVLSDQRGSLDQL 192 (880)
T ss_pred HHHHCCCHHHhcceeEeeccChHHHHcCCHHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999885 799999999999999999777666655 4443443333333333333
No 49
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.56 E-value=6.5e-15 Score=143.95 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=101.9
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH-
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l- 1243 (1491)
...+||=++.++. +|| +.++..+++.+-...+ -++|+ ++|++|||..+++.+++++|+ +|-++
T Consensus 38 GAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~i-----P~LRR-----~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 38 GAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI-----PFLRR-----QIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred CCCHHHHHHHHHhhhcCCCceEEECCeeccccccccc-----chhhh-----eeeeEeeeccccccchHhhhhhhhhhcc
Confidence 4456777766666 454 6777777777665443 12232 699999999999999999997 65432
Q ss_pred ----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1244 ----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1244 ----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.+||++||||++.+|++|+.||||.||||... ....|
T Consensus 108 G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 108 GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 48999999999999999999999999999988 45679
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+.|||.+.+..+. .+++.+..|
T Consensus 188 tTVl~ATHd~~lv~~~~----~rvl~l~~G 213 (223)
T COG2884 188 TTVLMATHDLELVNRMR----HRVLALEDG 213 (223)
T ss_pred cEEEEEeccHHHHHhcc----CcEEEEeCC
Confidence 99999999999999988 778888777
No 50
>KOG0964|consensus
Probab=99.55 E-value=3.5e-07 Score=109.87 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=39.9
Q ss_pred hhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1254 FSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1254 ~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
.|-++|+.+|||.-++||+..+ .-+...++|.+|--++++. +| |.||.+..
T Consensus 1116 rcDPAPFYlfDEIDAaLDaQyR~aVa~lIkelS~~aQFI~TTFRpEll~-vA----dKfygV~f 1174 (1200)
T KOG0964|consen 1116 RCDPAPFYLFDEIDAALDAQYRTAVADLIKELSDSAQFITTTFRPELLS-VA----DKFYGVKF 1174 (1200)
T ss_pred hcCCcchhhHhHHhhhccHHHHHHHHHHHHHHhhccceEeecccHHHHH-HH----Hhhhceee
Confidence 3566799999999999999888 2234588999999887765 56 88887643
No 51
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.54 E-value=4e-15 Score=158.93 Aligned_cols=121 Identities=19% Similarity=0.301 Sum_probs=101.2
Q ss_pred cccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH----hHHH-
Q psy9513 1173 RRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA----YVVR- 1242 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~----~~~~- 1242 (1491)
.+||=++.++. + +.+.+|+.++.++..+.+| + .++|+||.+....++++++.+ +|+.
T Consensus 40 GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelA----k---------~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~ 106 (258)
T COG1120 40 GKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELA----K---------KLAYVPQSPSAPFGLTVYELVLLGRYPHLG 106 (258)
T ss_pred CHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHh----h---------hEEEeccCCCCCCCcEEeehHhhcCCcccc
Confidence 56777766665 2 3489999999999887773 2 499999999998899888764 2321
Q ss_pred ----------------H-------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-h
Q psy9513 1243 ----------------I-------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-D 1277 (1491)
Q Consensus 1243 ----------------l-------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~ 1277 (1491)
+ +||||.||+||+++|++|+|||||++||..+. . .
T Consensus 107 ~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~ 186 (258)
T COG1120 107 LFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR 186 (258)
T ss_pred cccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH
Confidence 0 68999999999999999999999999999998 2 3
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|+|+|+||++++.++| |+++.|.+|
T Consensus 187 ~~~~tvv~vlHDlN~A~rya----d~~i~lk~G 215 (258)
T COG1120 187 EKGLTVVMVLHDLNLAARYA----DHLILLKDG 215 (258)
T ss_pred hcCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 55899999999999999999 999999887
No 52
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2e-14 Score=146.51 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=102.3
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRI-- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l-- 1243 (1491)
+..+||=++.+.. .| .+.+++.++..+-.+.+ +-+|. ++|+|||++++.+.+++.+|+..+++
T Consensus 40 GaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~l-----r~~r~-----~iGmIfQ~~nLv~r~sv~~NVl~grl~~ 109 (258)
T COG3638 40 GAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKEL-----RKLRR-----DIGMIFQQFNLVPRLSVLENVLLGRLGY 109 (258)
T ss_pred CCcHHHHHHHHhcccCCCcceEEecccchhccchHHH-----HHHHH-----hceeEeccCCcccccHHHHHHHhhhccc
Confidence 3456666665555 33 26777777877776655 33333 57999999999999999999754332
Q ss_pred ------------------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------
Q psy9513 1244 ------------------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------ 1275 (1491)
Q Consensus 1244 ------------------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------ 1275 (1491)
++|||+|||||+.+|++|+.|||+++|||.+.
T Consensus 110 ~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~ 189 (258)
T COG3638 110 TSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDI 189 (258)
T ss_pred chHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHH
Confidence 57999999999999999999999999999998
Q ss_pred ----HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ----SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ----~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|+|++.|+++++..+| +|++-|..|
T Consensus 190 l~~in~~~g~Tvi~nLH~vdlA~~Y~----~Riigl~~G 224 (258)
T COG3638 190 LKDINQEDGITVIVNLHQVDLAKKYA----DRIIGLKAG 224 (258)
T ss_pred HHHHHHHcCCEEEEEechHHHHHHHH----hhheEecCC
Confidence 3466999999999999999999 999999887
No 53
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.52 E-value=6.4e-15 Score=164.94 Aligned_cols=144 Identities=13% Similarity=0.176 Sum_probs=112.6
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH-
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l- 1243 (1491)
+..+||-+++|++ .|+ +.+|+..+..+--. ...+|++||+..+||||++.+|+ |+-++
T Consensus 41 GcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~---------------kR~ig~VFQ~YALFPHltV~~NVafGLk~~ 105 (352)
T COG3842 41 GCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE---------------KRPIGMVFQSYALFPHMTVEENVAFGLKVR 105 (352)
T ss_pred CCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh---------------hcccceeecCcccCCCCcHHHHhhhhhhhc
Confidence 4578999999999 343 88898888775441 23699999999999999999996 43221
Q ss_pred -----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhh
Q psy9513 1244 -----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQ 1278 (1491)
Q Consensus 1244 -----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~ 1278 (1491)
++|||||||||+.+|++|+||||+++||...+ ...
T Consensus 106 ~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~ 185 (352)
T COG3842 106 KKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE 185 (352)
T ss_pred CCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999998887 345
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecCCCcceeeeecccccccccccccccchhhhh
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHLRSLLSSRLLSRNSKLTLYNTI 1340 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~i~~~~~~~l~~~~ 1340 (1491)
.|.|+|+||||-+.+..++ |++++|+.|... . +++|..+-..+.......+
T Consensus 186 ~giT~i~VTHDqeEAl~ms----DrI~Vm~~G~I~-----Q--~gtP~eiY~~P~~~fVA~F 236 (352)
T COG3842 186 LGITFVYVTHDQEEALAMS----DRIAVMNDGRIE-----Q--VGTPEEIYERPATRFVADF 236 (352)
T ss_pred cCCeEEEEECCHHHHhhhc----cceEEccCCcee-----e--cCCHHHHhhCcchHHHHHH
Confidence 6999999999999999999 999999988222 1 4455555544443333333
No 54
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.52 E-value=1.6e-14 Score=137.85 Aligned_cols=125 Identities=18% Similarity=0.237 Sum_probs=99.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH--
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI-- 1243 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l-- 1243 (1491)
+.+||-+.|.++ .| .+.+.+.-+..+.+... +.+|. ..+||+||.+.+++.|+..+|+ .|..+
T Consensus 47 SGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~r-----A~~R~----~~vGfVFQSF~Lip~ltAlENV~lPleL~g 117 (228)
T COG4181 47 SGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR-----AALRA----RHVGFVFQSFHLIPNLTALENVALPLELRG 117 (228)
T ss_pred CcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHH-----HHhhc----cceeEEEEeeeccccchhhhhccchhhhcC
Confidence 456666666666 22 27777777887777555 23344 4599999999999999999997 44322
Q ss_pred ---------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcC
Q psy9513 1244 ---------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKN 1280 (1491)
Q Consensus 1244 ---------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~ 1280 (1491)
.+|||||||||+..|++||.||||.|||..+- ....|
T Consensus 118 e~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G 197 (228)
T COG4181 118 ESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197 (228)
T ss_pred CccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcC
Confidence 47999999999999999999999999998876 34569
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+++||||..++.+ | +|.++|..|
T Consensus 198 ~TlVlVTHD~~LA~R-c----~R~~r~~~G 222 (228)
T COG4181 198 TTLVLVTHDPQLAAR-C----DRQLRLRSG 222 (228)
T ss_pred ceEEEEeCCHHHHHh-h----hheeeeecc
Confidence 999999999998887 4 888898777
No 55
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.51 E-value=1.7e-15 Score=194.12 Aligned_cols=699 Identities=16% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhHcCCCCCCCC
Q psy9513 328 KLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKS 407 (1491)
Q Consensus 328 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~l~~~~~~~~ 407 (1491)
.+......+..+...++.-......+.+.+..++..+..+...+..-.......++.-.++...+.++...|...+....
T Consensus 12 ~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~ 91 (859)
T PF01576_consen 12 QLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQ 91 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 33333334444444444445555555555555555555555555544444444444444455555555555542211111
Q ss_pred C------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 408 Q------YTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNV 481 (1491)
Q Consensus 408 ~------~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~l 481 (1491)
+ ..+.++......++.....++..+..++..+......+..+++.++.....++.....+..++..+...+..+
T Consensus 92 aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~ 171 (859)
T PF01576_consen 92 AQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSL 171 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0 1122233333334444455666677777777666677777788877777777777777777777776666555
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chhHHHHHH
Q psy9513 482 ITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA-QNITLAEIK 560 (1491)
Q Consensus 482 ~~~l~~l~~~~~~l~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~-~~~~~~~l~ 560 (1491)
......... ....++..+..+...+.+... ....+......+..++..+...+......+..+.. ...+.++++
T Consensus 172 ~k~k~~~Ek---~~K~lE~qL~El~~klee~er--~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLe 246 (859)
T PF01576_consen 172 QKAKQEAEK---KRKQLEAQLNELQAKLEESER--QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLE 246 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHh---HHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333322 244556666666666666665 55566666666666666776666666666666555 445555555
Q ss_pred HHHHHHHHHHHHHHHHHH---HHhHHHHHhcCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q psy9513 561 SLKNRKESKLADINLLKE---RHDRAFHLLFDM-IPEENFKNSLDKALSSITFDINRIQEDINA--------KEKHLYTL 628 (1491)
Q Consensus 561 ~l~~~~~~~~~~v~~~~~---~~~~~l~~i~g~-~~~~~~~~aie~~L~~~~~~i~~~~~~i~~--------lk~~~~r~ 628 (1491)
.++..+..-...-..+.. .....+..+-+. .........+...+..+...+...+..++. +......+
T Consensus 247 elk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL 326 (859)
T PF01576_consen 247 ELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKL 326 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 555554444222222211 111112222111 111222333444444444444444432111 11111111
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCcccc
Q psy9513 629 EANVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLCT 708 (1491)
Q Consensus 629 ~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1491)
...|..+...++.....+..+.... .-+..++.++...+.........+..-...|+..+..++.....+....
T Consensus 327 ~~~L~el~e~le~~~~~~~~LeK~k------~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~ 400 (859)
T PF01576_consen 327 ERKLQELQEQLEEANAKVSSLEKTK------KRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAER 400 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1122222222222212111111110 1122234444444444444444444444445544444432211111111
Q ss_pred ccCC-CCCchhhHHHHHHHHhhhchhhhhhhHHHHHHHHHHHHHHHh-hchHHHHHHhhccCCcchHHHHHHHHHHHHHH
Q psy9513 709 RFFE-SDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQE-LKPVYENIMKLQDTDIPSLRSKLIELEENVIE 786 (1491)
Q Consensus 709 ~~~~-~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~-l~~~~~~~~~l~~~ei~~l~~~l~~l~~~l~~ 786 (1491)
.... ....+...+..|...++.+...+..++.....+..++.++.. +......+..|.. ....|+.++.++...+..
T Consensus 401 d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek-~kr~LE~e~~El~~~leE 479 (859)
T PF01576_consen 401 DAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEK-AKRRLEQEKEELQEQLEE 479 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1111 111234556667777777777777777777777777777665 5666666677766 677777777777777777
Q ss_pred HHHHHHHHHHhhcCchhhHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHH
Q psy9513 787 TKGELKKLKTALETPKTKEKTALS-LQGDLTLL-DQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELN 864 (1491)
Q Consensus 787 ~~~~~~~~e~~~~~~~~~~~~~~~-l~~~~~~l-~~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~ 864 (1491)
+...+...+.....+...+..++. +......- +.+......++..|..++..|.. .......+......+...+.
T Consensus 480 ~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~---E~k~r~~~~r~kkKLE~~l~ 556 (859)
T PF01576_consen 480 AEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEE---ERKERAEALREKKKLESDLN 556 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 777777766666666666666655 43332222 34444455566677777766643 22222333333333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHhhhhcchHHHHH
Q psy9513 865 TFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLN 944 (1491)
Q Consensus 865 ~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~l~~~~~~~~~l~~~~~ 944 (1491)
.+...+.............+..++..+.++...+.... ....++......++..+..+..++..+...+.
T Consensus 557 eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~----------~~~~~~~~~~~~~e~r~~~l~~elee~~~~~~ 626 (859)
T PF01576_consen 557 ELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQ----------RAREELREQLAVSERRLRALQAELEELREALE 626 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333333333333333333333333322222111 11111111122222233333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy9513 945 LAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERT 1024 (1491)
Q Consensus 945 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 1024 (1491)
........+..+.......+................+..+|..+ ..++++.......+...+.++....+.+..+
T Consensus 627 ~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l-----~~eleE~~~~~~~~~ek~kka~~~~~~l~~e 701 (859)
T PF01576_consen 627 QAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQL-----EEELEEEQSEAEAAEEKAKKAQAQAAQLAEE 701 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 33333322322211111111111111111223334444444443 3455666666677777777777777777777
Q ss_pred HHHHHHHHhhhhhhhhchHhhHHHHHHHHHHHHHHHHHHHH
Q psy9513 1025 INEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLS 1065 (1491)
Q Consensus 1025 l~~~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l~~l 1065 (1491)
+..-+......+..+.. +..+++.+..++.++
T Consensus 702 L~~Eq~~~~~le~~k~~---------LE~q~keLq~rl~e~ 733 (859)
T PF01576_consen 702 LRQEQDHNQHLEKEKKA---------LERQVKELQARLEEA 733 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
Confidence 77666666555554443 445555555566555
No 56
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.9e-14 Score=160.31 Aligned_cols=141 Identities=19% Similarity=0.252 Sum_probs=110.2
Q ss_pred ccCCC-cceeEEeeccCCCC------CCCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccce
Q psy9513 1151 IYQGN-DIDYISIAADVGTG------SEKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQ 1218 (1491)
Q Consensus 1151 ~~~G~-~i~~i~I~~~~~~~------~~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~ 1218 (1491)
.|.+. .++.|.+....|+. ++..+||-++++++ .|+ +.+|++.+..+.- ....
T Consensus 12 ~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P---------------~~R~ 76 (338)
T COG3839 12 SFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP---------------EKRG 76 (338)
T ss_pred EcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---------------hHCC
Confidence 34444 44445554443332 33468899999998 333 7778777766543 2346
Q ss_pred EEEEccchhhhhhhhhHHHH-hHHHH-----------------------------------hhhHHHHHHHhhcCCCeeE
Q psy9513 1219 LIVITHDEEFIENLTAIDRA-YVVRI-----------------------------------VRDHKALAETFSRNCGIFA 1262 (1491)
Q Consensus 1219 l~~i~~~~~~~~~L~~~~~~-~~~~l-----------------------------------~~~~~~~a~~~~~~~~~l~ 1262 (1491)
+++|||++.+||+||+++|+ ++-++ ++||||||||++.+|++++
T Consensus 77 iamVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L 156 (338)
T COG3839 77 IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFL 156 (338)
T ss_pred EEEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999997 55322 6899999999999999999
Q ss_pred EcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1263 LDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1263 lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||||+++||...+ ...-|.|+|+||||..++..++ |++.+|..|
T Consensus 157 ~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla----dri~Vm~~G 210 (338)
T COG3839 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA----DRIVVMNDG 210 (338)
T ss_pred ecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC----CEEEEEeCC
Confidence 9999999999887 3345899999999999999999 999999866
No 57
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=4e-14 Score=138.39 Aligned_cols=120 Identities=21% Similarity=0.245 Sum_probs=97.3
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-HH---
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-RI--- 1243 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~l--- 1243 (1491)
.+||-++++++ .| .+.+|.+-|..-+. -=|++||++.++|.|+..+|+-|. ++
T Consensus 43 GKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga------------------ergvVFQ~~~LlPWl~~~dNvafgL~l~Gi 104 (259)
T COG4525 43 GKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA------------------ERGVVFQNEALLPWLNVIDNVAFGLQLRGI 104 (259)
T ss_pred cHHHHHHHHhcCcCcccceEEECCEeccCCCc------------------cceeEeccCccchhhHHHHHHHHHHHhcCC
Confidence 35556666665 22 25566665555443 148999999999999999998542 11
Q ss_pred --------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCc
Q psy9513 1244 --------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNF 1281 (1491)
Q Consensus 1244 --------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~ 1281 (1491)
||||+.|||||+.+|++|+|||||++||..++ +...|+
T Consensus 105 ~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk 184 (259)
T COG4525 105 EKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGK 184 (259)
T ss_pred CHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999988 778899
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecCCCcc
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKGL 1314 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~ 1314 (1491)
++++||||++++..++ +++++|+.+|..+
T Consensus 185 ~~lliTH~ieEAlfla----trLvvlsp~pgRv 213 (259)
T COG4525 185 QVLLITHDIEEALFLA----TRLVVLSPGPGRV 213 (259)
T ss_pred eEEEEeccHHHHHhhh----heeEEecCCCcee
Confidence 9999999999999999 9999998876554
No 58
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=2.6e-14 Score=137.32 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=80.4
Q ss_pred eEEEEccchhhhhhhhhHHHH--hHHHH-----------------------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRA--YVVRI-----------------------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~--~~~~l-----------------------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
+||.+||++++..+|++.+|+ -|..+ ++||++|||||++.|.+
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~v 173 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEV 173 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCce
Confidence 689999999999999999986 23222 57999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++||||++|||+-. +..+|.|+++|||.+.|+..++ .+++.|+.|
T Consensus 174 mLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs----s~v~fLh~G 228 (256)
T COG4598 174 MLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS----SHVIFLHQG 228 (256)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh----hheEEeecc
Confidence 999999999999987 5678999999999999999999 899999888
No 59
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.47 E-value=5.9e-14 Score=141.07 Aligned_cols=98 Identities=17% Similarity=0.281 Sum_probs=84.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC-CcHHHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-KDEASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-~~~~~~~ 80 (1491)
|.++|+ |+||+..+ .+|+|++. +++|+||+||||||||+|| .|+.+|.+ |.|.++|..+.. ......+
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRcl----N~LE~~~~--G~I~i~g~~~~~~~~~~~~R 76 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCL----NGLEEPDS--GSITVDGEDVGDKKDILKLR 76 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHH----HCCcCCCC--ceEEECCEeccchhhHHHHH
Confidence 789999 79998887 88888876 9999999999999999999 99999999 999999966633 2345678
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhccccCC
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCTCENN 110 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~~~~~ 110 (1491)
+.+|+| |..++++..++..+|.+......+
T Consensus 77 ~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~ 107 (240)
T COG1126 77 RKVGMVFQQFNLFPHLTVLENVTLAPVKVKK 107 (240)
T ss_pred HhcCeecccccccccchHHHHHHhhhHHHcC
Confidence 889999 999999999999999987654443
No 60
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=3.6e-13 Score=132.82 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=101.6
Q ss_pred CCCCCCCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH
Q psy9513 1166 VGTGSEKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV 1240 (1491)
Q Consensus 1166 ~~~~~~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~ 1240 (1491)
+|+++. .+||-+..+++ .|+ +.+|..++..+---.. +.-.+||.||.+..|.+|++.+|+..
T Consensus 36 LGPNGA-GKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~R------------ArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 36 LGPNGA-GKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR------------ARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred ECCCCC-CceeEEEEEEEEEecCCceEEECCcccccCChHHH------------hhcCcccccccchHhhcCcHHHHHHH
Confidence 344433 45555555554 443 8888888876643111 24589999999999999999998643
Q ss_pred H-H--------------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------
Q psy9513 1241 V-R--------------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------- 1275 (1491)
Q Consensus 1241 ~-~--------------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------- 1275 (1491)
. + + .|.|+.|||||+.+|++|+|||||+|+||..+
T Consensus 103 vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI 182 (243)
T COG1137 103 VLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRII 182 (243)
T ss_pred HHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHH
Confidence 1 0 1 48899999999999999999999999999998
Q ss_pred --HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 --SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 --~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+...|+.|+++.|+..+...+| ||.|++..|
T Consensus 183 ~~L~~rgiGvLITDHNVREtL~i~----dRaYIi~~G 215 (243)
T COG1137 183 KHLKDRGIGVLITDHNVRETLDIC----DRAYIISDG 215 (243)
T ss_pred HHHHhCCceEEEccccHHHHHhhh----heEEEEecC
Confidence 5677999999999999999999 999999888
No 61
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.45 E-value=2.1e-13 Score=154.22 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=79.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH-H-----------------------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR-I-----------------------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~-l-----------------------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
++||+||++.|++.||+.+++.++. + ||||++||.||+.+|+++
T Consensus 79 ~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~ll 158 (293)
T COG1131 79 RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELL 158 (293)
T ss_pred heEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 4999999999999999999874411 0 799999999999999999
Q ss_pred EEcCCCCCCChHhH---------HhhcC-ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SDQKN-FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~~~~-~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||||||+||||..+ ....| .|||++||.++.+..+| |+++.+.+|
T Consensus 159 iLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~----d~v~il~~G 213 (293)
T COG1131 159 ILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC----DRVIILNDG 213 (293)
T ss_pred EECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhC----CEEEEEeCC
Confidence 99999999999998 34445 79999999999999999 999999988
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.44 E-value=2e-13 Score=157.02 Aligned_cols=126 Identities=16% Similarity=0.220 Sum_probs=99.7
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHH--
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~-- 1242 (1491)
...+||=++++++ +|+ +.+|+.++..+....+ +..| ..+|||||++.+++.+++.+|+ ++..
T Consensus 41 GaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l-----~~~r-----~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~ 110 (343)
T TIGR02314 41 GAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL-----TKAR-----RQIGMIFQHFNLLSSRTVFGNVALPLELD 110 (343)
T ss_pred CCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-----HHHh-----cCEEEEECCccccccCcHHHHHHHHHHHc
Confidence 3467888887777 332 6778877766544322 1111 2699999999999999999886 3321
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||++||+.+. ... .
T Consensus 111 ~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~ 190 (343)
T TIGR02314 111 NTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190 (343)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999998 222 4
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++..+| |++++|++|
T Consensus 191 g~tiiliTH~~~~v~~~~----d~v~vl~~G 217 (343)
T TIGR02314 191 GLTILLITHEMDVVKRIC----DCVAVISNG 217 (343)
T ss_pred CCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.44 E-value=7.9e-14 Score=149.10 Aligned_cols=94 Identities=19% Similarity=0.330 Sum_probs=83.2
Q ss_pred ceeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+. +|++..+ .+++|+++ +++|+|||||||||||+|| +|.++|.+ |.|.++|..+........+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l----~g~l~p~~--G~V~l~g~~i~~~~~kelA 75 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCL----AGLLKPKS--GEVLLDGKDIASLSPKELA 75 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHH----hccCCCCC--CEEEECCCchhhcCHHHHh
Confidence 37889994 9987777 99999987 9999999999999999999 99999998 9999999988766677788
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..++|+ |.+...+..+|...|.+.-
T Consensus 76 k~ia~vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 76 KKLAYVPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred hhEEEeccCCCCCCCcEEeehHhhcC
Confidence 899999 9988888888888888753
No 64
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.1e-13 Score=138.16 Aligned_cols=110 Identities=16% Similarity=0.305 Sum_probs=89.1
Q ss_pred cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH--------------------
Q psy9513 1185 NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI-------------------- 1243 (1491)
Q Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l-------------------- 1243 (1491)
+-+.+++.|+-+-...+. -+| + .+|.+||.|+-|| ++.++|+ |..++
T Consensus 67 G~v~~~g~ni~~~~~d~~---~lR---r-----~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~Aa 134 (253)
T COG1117 67 GEVLLDGKNIYDPKVDVV---ELR---R-----RVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAA 134 (253)
T ss_pred EEEEECCeeccCCCCCHH---HHH---H-----HheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhH
Confidence 347788888877643333 223 2 5899999999999 9999997 43222
Q ss_pred -------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHH
Q psy9513 1244 -------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENL 1296 (1491)
Q Consensus 1244 -------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~ 1296 (1491)
++||+|||||++.+|+||+|||||++|||.+. .-....|||+|||++.-+.++
T Consensus 135 LWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRv 214 (253)
T COG1117 135 LWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARV 214 (253)
T ss_pred hHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHH
Confidence 68999999999999999999999999999987 234689999999999999999
Q ss_pred hccccceEEEEecC
Q psy9513 1297 TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1297 ~~~~~~~~~~l~~~ 1310 (1491)
+ |+.+.+..|
T Consensus 215 S----D~taFf~~G 224 (253)
T COG1117 215 S----DYTAFFYLG 224 (253)
T ss_pred h----Hhhhhhccc
Confidence 9 887776666
No 65
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.43 E-value=1.7e-13 Score=140.40 Aligned_cols=94 Identities=14% Similarity=0.220 Sum_probs=86.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ +.|++..+ .+++|+++ +++++||+||||||+|++| .+...|++ |.|+++|..+...+....++
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMI----NrLiept~--G~I~i~g~~i~~~d~~~LRr 75 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMI----NRLIEPTS--GEILIDGEDISDLDPVELRR 75 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHH----hcccCCCC--ceEEECCeecccCCHHHHHH
Confidence 678999 79998777 89999987 9999999999999999999 99999999 99999999997777788999
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.+||+ |..++++..++..+|.++..
T Consensus 76 ~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 76 KIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred hhhhhhhhcccCCCccHHHHHHhhhh
Confidence 99999 99999999999999998775
No 66
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.43 E-value=2e-13 Score=140.62 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=91.6
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh--hhhhhhhHHHH-----
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE--FIENLTAIDRA----- 1238 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~--~~~~L~~~~~~----- 1238 (1491)
+..+||=.+++++ +| .+.+|+..+......- ..=..+-+|||||+ |-|..++.+.+
T Consensus 43 GsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~------------~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~ 110 (252)
T COG1124 43 GSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAK------------AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR 110 (252)
T ss_pred CCCHHHHHHHHhcccCCCCceEEECCcccCccccch------------hhccceeEEecCCccccCcchhHHHHHhhhhc
Confidence 3457777777777 33 3677776555543211 11124778999983 44444444332
Q ss_pred ---------------------------hHHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhh
Q psy9513 1239 ---------------------------YVVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQ 1278 (1491)
Q Consensus 1239 ---------------------------~~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~ 1278 (1491)
+|+++ ++||+||||||+.+|++|||||||++||.... ...
T Consensus 111 ~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~ 190 (252)
T COG1124 111 PHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE 190 (252)
T ss_pred cCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh
Confidence 22222 69999999999999999999999999999877 455
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+||||||+..+.++| ||+++|++|
T Consensus 191 ~~lt~l~IsHdl~~v~~~c----dRi~Vm~~G 218 (252)
T COG1124 191 RGLTYLFISHDLALVEHMC----DRIAVMDNG 218 (252)
T ss_pred cCceEEEEeCcHHHHHHHh----hheeeeeCC
Confidence 6899999999999999999 999999988
No 67
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.43 E-value=4e-13 Score=155.30 Aligned_cols=126 Identities=15% Similarity=0.159 Sum_probs=99.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ .|+ +.+|+.++.......+ +.+| ...++|+||++.+++++++.+|+.+. .
T Consensus 30 sGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~-----~~~r----r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~ 100 (363)
T TIGR01186 30 SGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVEL-----REVR----RKKIGMVFQQFALFPHMTILQNTSLGPELLG 100 (363)
T ss_pred ChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH-----HHHH----hCcEEEEECCCcCCCCCCHHHHHHHHHHHcC
Confidence 457777777776 333 7788887776544322 1112 24699999999999999999986321 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcC
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKN 1280 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~ 1280 (1491)
+ ++||++|||||+.+|++|+|||||++||+.+. .. ..|
T Consensus 101 ~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~ 180 (363)
T TIGR01186 101 WPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180 (363)
T ss_pred CCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 68999999999999999999999999999998 22 348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+||||++++..+| |++++|.+|
T Consensus 181 ~Tii~vTHd~~ea~~~~----drI~vl~~G 206 (363)
T TIGR01186 181 KTIVFITHDLDEAIRIG----DRIVIMKAG 206 (363)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 99999999999999999 999999877
No 68
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.42 E-value=1e-13 Score=143.01 Aligned_cols=97 Identities=21% Similarity=0.240 Sum_probs=87.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC-CcHHHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-KDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-~~~~~~ 79 (1491)
.|.++|+ ++||+..+ .+++|++. +++|+|||||||||++++| +|.++|++ |.|.+.|.++.+ +....+
T Consensus 4 lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNli----tG~~~P~~--G~v~~~G~~it~l~p~~ia 77 (250)
T COG0411 4 LLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI----TGFYKPSS--GTVIFRGRDITGLPPHRIA 77 (250)
T ss_pred eeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeee----cccccCCC--ceEEECCcccCCCCHHHHH
Confidence 3789999 79999887 99999986 9999999999999999999 99999999 999999998877 556678
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhcccc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCTCE 108 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~ 108 (1491)
+.|++.. |.+.+++..+|.++|.+.....
T Consensus 78 r~Gi~RTFQ~~rlF~~lTVlENv~va~~~~ 107 (250)
T COG0411 78 RLGIARTFQITRLFPGLTVLENVAVGAHAR 107 (250)
T ss_pred hccceeecccccccCCCcHHHHHHHHhhhh
Confidence 8899999 9999999999999999876533
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.41 E-value=5.2e-06 Score=103.44 Aligned_cols=281 Identities=15% Similarity=0.183 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhHcCCCCCCCCC-CCchhHHHHHHHH
Q psy9513 343 LENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQ-YTPEEGEGLIKMS 421 (1491)
Q Consensus 343 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l~~~l~~~~~~~~~-~~~~~~~~~~~~l 421 (1491)
++....+...+..+.+.+...+..+...++.++..+..+...+...+..+..+...+...|.+..+ .........+...
T Consensus 109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~ 188 (775)
T PF10174_consen 109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREA 188 (775)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHH
Confidence 444444444444455555555555555555555555566666666666666666666443333221 1112233334444
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chHHH
Q psy9513 422 QTTIDKYLSDIKILERTFSDNENTKQAEINALI--VEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQ----SQSTL 495 (1491)
Q Consensus 422 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~--~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~----~~~~l 495 (1491)
+..+..+...++............+........ ..-..+..-|..+.+.+..++..+..+..++..+.. .....
T Consensus 189 e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 189 EARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 444444444444433333222111111110000 000022333333333333333333334444444432 11122
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-chhHHHHHHHHHHHHHHHHHHHH
Q psy9513 496 QVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQA-QNITLAEIKSLKNRKESKLADIN 574 (1491)
Q Consensus 496 ~~le~~l~~~~~el~~l~~~~~~~~l~~~l~~~~~~~~~le~~l~~l~~el~~l~~-~~~~~~~l~~l~~~~~~~~~~v~ 574 (1491)
..+...+.........+ +..+..+.-++..-...+..+..++..+.. ....+..++.++..+..+.....
T Consensus 269 ~~~~k~le~~~s~~~~m---------K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~ 339 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAM---------KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAE 339 (775)
T ss_pred HHHHHHHHHHHhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333222222222 222333333334444444444444444333 33345556666655555533322
Q ss_pred HHHHHHhHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy9513 575 LLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRTLAEL 649 (1491)
Q Consensus 575 ~~~~~~~~~l~~i~g~~~~~~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~~l~~~~~~l~~~ 649 (1491)
.+. + -..++..-|......+......+..+....++++..+..+...++.++..+..+
T Consensus 340 ~Lq--------s---------dve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 340 MLQ--------S---------DVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHH--------H---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1 023344445555555555555555555555555555555555554444444433
No 70
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=6.5e-14 Score=138.02 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=88.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC-CcHHHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-KDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-~~~~~~ 79 (1491)
.|.+.|+ |+|++..+ .+++|.+. +++++|||||||||.+.++ .|..+|++ |.|.++|.++.. +...++
T Consensus 4 ~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi----~Glv~~d~--G~i~ld~~diT~lPm~~RA 77 (243)
T COG1137 4 TLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMI----VGLVRPDS--GKILLDDEDITKLPMHKRA 77 (243)
T ss_pred EEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEE----EEEEecCC--ceEEECCcccccCChHHHh
Confidence 4889999 89998887 89999986 9999999999999999999 99999999 999999998866 666788
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhcccc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCTCE 108 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~ 108 (1491)
+.|++|. |+++++...+|..++..++...
T Consensus 78 rlGigYLpQE~SIFr~LtV~dNi~~vlE~~ 107 (243)
T COG1137 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIR 107 (243)
T ss_pred hcCcccccccchHhhcCcHHHHHHHHHhhh
Confidence 9999999 9999999999999999887643
No 71
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=2.6e-13 Score=138.06 Aligned_cols=89 Identities=17% Similarity=0.312 Sum_probs=82.1
Q ss_pred eEEEEccchhhhhhhhhHHHH-hHHHH-----------------------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRA-YVVRI-----------------------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~-~~~~l-----------------------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.+||.|....+|+.|++.+.+ |+..| +.|++.+..+++++|+++
T Consensus 73 rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLl 152 (300)
T COG4152 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELL 152 (300)
T ss_pred hcccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEE
Confidence 599999999999999999986 76554 568899999999999999
Q ss_pred EEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||||||||||.|. ....|.|||++||.++.+..+| |++..|.+|
T Consensus 153 ILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLC----D~llmL~kG 206 (300)
T COG4152 153 ILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC----DRLLMLKKG 206 (300)
T ss_pred EecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHh----hhhheecCC
Confidence 99999999999998 5678999999999999999999 999999888
No 72
>PRK03918 chromosome segregation protein; Provisional
Probab=99.41 E-value=2.2e-06 Score=115.31 Aligned_cols=59 Identities=34% Similarity=0.469 Sum_probs=50.3
Q ss_pred HHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCCC
Q psy9513 1249 ALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHK 1312 (1491)
Q Consensus 1249 ~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~ 1312 (1491)
|||++++.+|++++|||||+|||+.+. ....+.|||+||||.++. .+| |+++.|..++.
T Consensus 804 al~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~-~~~----d~~~~l~~~~~ 871 (880)
T PRK03918 804 ALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELK-DAA----DYVIRVSLEGG 871 (880)
T ss_pred HHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH-HhC----CeEEEEEecCC
Confidence 999999999999999999999999886 233467999999999865 578 99999986643
No 73
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.41 E-value=8.5e-10 Score=140.12 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=49.8
Q ss_pred hhhHHHHHHHhh----------cCCCeeEEcCCC-CCCChHhH------H-hhcCceEEEEccCHHHHHHHhccccceEE
Q psy9513 1244 VRDHKALAETFS----------RNCGIFALDEPT-TNLDIKNA------S-DQKNFQLIVITHDEEFIENLTAIDRAYVV 1305 (1491)
Q Consensus 1244 ~~~~~~~a~~~~----------~~~~~l~lDEp~-~~lD~~~~------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~ 1305 (1491)
+++|++||++|+ .+|++|+||||| ++||+.+. . .-.|.+||+|||+.++. ..+ |+++
T Consensus 473 e~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~-~~~----d~~~ 547 (562)
T PHA02562 473 EKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDP-QKF----DRHL 547 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhch-hhh----hcEE
Confidence 577778888877 489999999998 68999987 1 11578999999997665 456 9999
Q ss_pred EEecC
Q psy9513 1306 RIVRD 1310 (1491)
Q Consensus 1306 ~l~~~ 1310 (1491)
.|.++
T Consensus 548 ~l~~~ 552 (562)
T PHA02562 548 KMEKV 552 (562)
T ss_pred EEEEE
Confidence 99874
No 74
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.40 E-value=6.3e-13 Score=152.17 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=95.4
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HHH--
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VRI-- 1243 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~l-- 1243 (1491)
..+||-++++++ .|+ +.+++..+...... + ...+||+||++.|++.+++.+++.+ ..+
T Consensus 44 aGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~------~--------~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (306)
T PRK13537 44 AGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARH------A--------RQRVGVVPQFDNLDPDFTVRENLLVFGRYFG 109 (306)
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEecccchHH------H--------HhcEEEEeccCcCCCCCcHHHHHHHHHHHcC
Confidence 457777777776 332 55666554332211 0 1359999999999999999998632 110
Q ss_pred ---------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1244 ---------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1244 ---------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
|+||++||+||+++|++|+|||||+|||+.++ ....|.
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~ 189 (306)
T PRK13537 110 LSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGK 189 (306)
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999998 334589
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||++||+++++..+| |+++.|++|
T Consensus 190 till~sH~l~e~~~~~----d~i~il~~G 214 (306)
T PRK13537 190 TILLTTHFMEEAERLC----DRLCVIEEG 214 (306)
T ss_pred EEEEECCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999887
No 75
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.4e-12 Score=141.41 Aligned_cols=111 Identities=24% Similarity=0.328 Sum_probs=85.8
Q ss_pred cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHH----------------------------
Q psy9513 1187 IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAID---------------------------- 1236 (1491)
Q Consensus 1187 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~---------------------------- 1236 (1491)
+.+++.++.++.++.+ +.-+-..+++||||| .|-|-++...
T Consensus 67 i~f~g~~l~~l~~~~~---------~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~ 137 (316)
T COG0444 67 ILFDGKDLLSLSEKEL---------RKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLEL 137 (316)
T ss_pred EEECCcccccCCHHHH---------HhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 6778888888877532 233466799999997 2222222111
Q ss_pred ----------HHhHHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHH
Q psy9513 1237 ----------RAYVVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1237 ----------~~~~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~ 1293 (1491)
+.||+++ |+|||.||.|++.+|++||.||||++||.... ....|.++|+||||+..+
T Consensus 138 Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vv 217 (316)
T COG0444 138 VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVV 217 (316)
T ss_pred cCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1122333 89999999999999999999999999999887 234699999999999999
Q ss_pred HHHhccccceEEEEecC
Q psy9513 1294 ENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1294 ~~~~~~~~~~~~~l~~~ 1310 (1491)
..+| |++++|..|
T Consensus 218 a~~a----Dri~VMYaG 230 (316)
T COG0444 218 AEIA----DRVAVMYAG 230 (316)
T ss_pred HHhc----ceEEEEECc
Confidence 9999 999999988
No 76
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.40 E-value=7.1e-13 Score=138.96 Aligned_cols=89 Identities=21% Similarity=0.274 Sum_probs=80.8
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEcc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITH 1288 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~th 1288 (1491)
.++|+||++.++++++..+++.+..-++||++||+||+.+|++|+|||||++||+.+. ....|.|+|++||
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th 153 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSH 153 (173)
T ss_pred cEEEEecCCccccCCcHHHHhhcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 5999999999999999999987666689999999999999999999999999999987 2334789999999
Q ss_pred CHHHHHHHhccccceEEEEecC
Q psy9513 1289 DEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1289 d~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.+++..+| |+++++++|
T Consensus 154 ~~~~~~~~~----d~i~~l~~g 171 (173)
T cd03230 154 ILEEAERLC----DRVAILNNG 171 (173)
T ss_pred CHHHHHHhC----CEEEEEeCC
Confidence 999999999 999999876
No 77
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.38 E-value=6.1e-13 Score=136.20 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=86.3
Q ss_pred ceeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC-CcHHHh
Q psy9513 6 QLHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-KDEASA 79 (1491)
Q Consensus 6 ~l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-~~~~~~ 79 (1491)
.|+++|+. .||..++ .+|+|.++ +++|+|||||||||+|++| +|..||.+ |.|.+.|.++.+ +...++
T Consensus 3 mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti----~Gl~~~~~--G~I~~~G~dit~~p~~~r~ 76 (237)
T COG0410 3 MLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTI----MGLVRPRS--GRIIFDGEDITGLPPHERA 76 (237)
T ss_pred ceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--eeEEECCeecCCCCHHHHH
Confidence 38899995 8887777 99999987 9999999999999999999 99999998 999999999977 667788
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
+.|++|+ |...+++..+|..++.+....
T Consensus 77 r~Gi~~VPegR~iF~~LTVeENL~~g~~~ 105 (237)
T COG0410 77 RLGIAYVPEGRRIFPRLTVEENLLLGAYA 105 (237)
T ss_pred hCCeEeCcccccchhhCcHHHHHhhhhhc
Confidence 9999999 999999999999999987553
No 78
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.38 E-value=9.8e-13 Score=152.95 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=97.2
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHh-HHH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAY-VVR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~-~~~-- 1242 (1491)
+..+||=++++++ .| .+.+|+..+..... ....+||+||++.|++++++.+|+. +..
T Consensus 40 GsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---------------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (356)
T PRK11650 40 GCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---------------ADRDIAMVFQNYALYPHMSVRENMAYGLKIR 104 (356)
T ss_pred CCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---------------HHCCEEEEeCCccccCCCCHHHHHHhHHhhc
Confidence 3467888888887 33 26677766643221 1146999999999999999999873 211
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||++||+.+. ... .
T Consensus 105 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 184 (356)
T PRK11650 105 GMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL 184 (356)
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999988 223 4
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 185 g~tii~vTHd~~ea~~l~----D~i~vl~~G 211 (356)
T PRK11650 185 KTTSLYVTHDQVEAMTLA----DRVVVMNGG 211 (356)
T ss_pred CCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 899999999999999999 999999877
No 79
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=4.5e-13 Score=139.85 Aligned_cols=91 Identities=18% Similarity=0.281 Sum_probs=80.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.+.++++ ++|++..+ .+|+|+++ |++|+||+||||||||++| +|...|.+ |.|.++|..+.++ .
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLrii----AGL~~p~~--G~V~~~g~~v~~p-----~ 71 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLI----AGLEKPTS--GEVLLDGRPVTGP-----G 71 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCcccCCC-----C
Confidence 4789999 69998777 99999987 9999999999999999999 99999999 9999999776332 2
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
..++|+ |++.+.++.++..||.+.+..
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~ 99 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLEL 99 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhc
Confidence 467899 999999999999999998874
No 80
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.37 E-value=4.7e-13 Score=131.21 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=85.2
Q ss_pred cceeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeC-CCCCC-CcHH
Q psy9513 5 DQLHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHD-PRIGK-KDEA 77 (1491)
Q Consensus 5 ~~l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~-~~~~~-~~~~ 77 (1491)
..|.+.|+. +|++..+ .+++|+++ +-+|+|||||||||+|++| +|..+|.. |.++++| .++.+ +...
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~I----tGKtrp~~--G~v~f~g~~dl~~~~e~~ 77 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVI----TGKTRPQE--GEVLFDGDTDLTKLPEHR 77 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeee----cccCCCCc--ceEEEcCchhhccCCHHH
Confidence 468999995 9999888 99999986 9999999999999999999 99999998 9999998 66766 4446
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.++.|++.. |.|..+...+|+.++.+...
T Consensus 78 IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 78 IARAGIGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred HHHhccCccccCCeehhhccHHHHHHHHhc
Confidence 788899999 99999999999999998765
No 81
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.37 E-value=5.4e-13 Score=129.26 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=95.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||-+++|++ .| .+.+++.+.....= +-..+..+||+.++|.+|++.+|+-+.
T Consensus 36 aGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---------------~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 36 AGKSTLLNLIAGFETPASGEILINGVDHTASPP---------------AERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred ccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---------------ccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 456777777777 23 36666665543332 234577899999999999999986321
Q ss_pred ---------------HH----------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcC
Q psy9513 1242 ---------------RI----------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKN 1280 (1491)
Q Consensus 1242 ---------------~l----------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~ 1280 (1491)
++ +||||||||+|+.+-+||+|||||++|||.-+ ....+
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~ 180 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK 180 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC
Confidence 00 69999999999999999999999999999887 34568
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+|||..+.+.+++ ++++++++|
T Consensus 181 ~TllmVTH~~~Da~~ia----~~~~fl~~G 206 (231)
T COG3840 181 MTLLMVTHHPEDAARIA----DRVVFLDNG 206 (231)
T ss_pred CEEEEEeCCHHHHHHhh----hceEEEeCC
Confidence 99999999999999999 999999988
No 82
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.37 E-value=1.3e-12 Score=151.72 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=95.1
Q ss_pred CCcccceeEEEEe--c-----cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHh-HHH
Q psy9513 1171 EKRRTYNYRVVQK--K-----NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAY-VVR 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~-~~~ 1242 (1491)
...+||=++++++ . +.+.+|+..+..... ....+||+||++.+++++++.+|+. +..
T Consensus 41 GsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~---------------~~r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 41 GCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP---------------HKRGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred CCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH---------------HHCCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 3467778887777 2 224566655532211 0136999999999999999999873 221
Q ss_pred ------------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh
Q psy9513 1243 ------------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ 1278 (1491)
Q Consensus 1243 ------------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~ 1278 (1491)
+ ++||++|||||+.+|++|+|||||+|||+..+ ...
T Consensus 106 ~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 106 AQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHE 185 (362)
T ss_pred HcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH
Confidence 0 68999999999999999999999999999987 223
Q ss_pred c--CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 K--NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~--~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. |.|+|+||||.+++..+| |++++|.+|
T Consensus 186 ~~~g~til~vTHd~~ea~~l~----dri~vl~~G 215 (362)
T TIGR03258 186 ELPELTILCVTHDQDDALTLA----DKAGIMKDG 215 (362)
T ss_pred hCCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3 789999999999999999 999999887
No 83
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.36 E-value=9e-13 Score=140.12 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=58.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|||.|||||+.+|++|+|||||+|+|+.+. +..+|.|||+||||++.+..++ |+++.|.+.
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~----D~vi~Ln~~ 215 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYF----DRVICLNRH 215 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhC----CEEEEEcCe
Confidence 68999999999999999999999999999998 4556999999999999999999 999999765
No 84
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.36 E-value=1.7e-12 Score=149.91 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=94.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||-++++++ .|+ +.+++..+..... . ....+||+||++.|++.+++.+++.+ ..
T Consensus 78 aGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~-~-------------~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 78 AGKSTIARMILGMTSPDAGKITVLGVPVPARAR-L-------------ARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred CCHHHHHHHHHcCCCCCceEEEECCEECCcchH-H-------------HhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 456777777776 332 5566655433211 0 12369999999999999999888632 10
Q ss_pred ------------H--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ------------I--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ------------l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
+ |+||++||+||+.+|++|||||||+|||+.++ ....|.
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~ 223 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 223 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 78999999999999999999999999999998 334589
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||++||+++++..+| |+++.|++|
T Consensus 224 tilisSH~l~e~~~~~----d~i~il~~G 248 (340)
T PRK13536 224 TILLTTHFMEEAERLC----DRLCVLEAG 248 (340)
T ss_pred EEEEECCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999887
No 85
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.36 E-value=1.8e-12 Score=141.95 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=94.4
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+........ ..+| .+++|+||++.+++.+++.+++.+.
T Consensus 40 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-----~~~~-----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 109 (216)
T TIGR00960 40 AGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREI-----PFLR-----RHIGMVFQDHRLLSDRTVYDNVAFPLRIIG 109 (216)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHH-----HHHH-----HhceEEecCccccccccHHHHHHHHHHhcC
Confidence 457777777777 33 25666665543322111 1111 2589999999999999988875321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 110 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 189 (216)
T TIGR00960 110 VPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGT 189 (216)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC
Confidence 00 68999999999999999999999999999988 234588
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||+||||.+++..+| |+++.|.+|
T Consensus 190 tii~vsH~~~~~~~~~----d~i~~l~~G 214 (216)
T TIGR00960 190 TVLVATHDINLVETYR----HRTLTLSRG 214 (216)
T ss_pred EEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 9999999999999999 999999876
No 86
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.36 E-value=6.9e-13 Score=147.88 Aligned_cols=95 Identities=14% Similarity=0.284 Sum_probs=82.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++||+..+ .+|+|++. +++|+|||||||||+|++| .|+.+|++ |.|+++|..+.... ...
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~I----AGLe~~~~--G~I~i~g~~vt~l~--P~~ 74 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMI----AGLEEPTS--GEILIDGRDVTDLP--PEK 74 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEECCCCC--hhH
Confidence 4889999 79997524 78888875 9999999999999999999 99999999 99999998885421 234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcccc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCTCE 108 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~~~ 108 (1491)
++++++ |...+++.++|+.++.+.+...
T Consensus 75 R~iamVFQ~yALyPhmtV~~Niaf~Lk~~ 103 (338)
T COG3839 75 RGIAMVFQNYALYPHMTVYENIAFGLKLR 103 (338)
T ss_pred CCEEEEeCCccccCCCcHHHHhhhhhhhC
Confidence 789999 9999999999999999998853
No 87
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.35 E-value=1.8e-12 Score=150.13 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=97.4
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~-- 1242 (1491)
+..+||=++++++ .| .+.+|+..+..... ....+||+||++.+++++++.+|+.| ..
T Consensus 42 GsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---------------~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~ 106 (351)
T PRK11432 42 GCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI---------------QQRDICMVFQSYALFPHMSLGENVGYGLKML 106 (351)
T ss_pred CCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---------------HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc
Confidence 3467888888877 33 26777776643211 12469999999999999999998743 11
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||+|||+..+ . ...
T Consensus 107 ~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 186 (351)
T PRK11432 107 GVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186 (351)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999998 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|++|
T Consensus 187 g~tii~vTHd~~e~~~la----D~i~vm~~G 213 (351)
T PRK11432 187 NITSLYVTHDQSEAFAVS----DTVIVMNKG 213 (351)
T ss_pred CCEEEEEcCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999987
No 88
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.35 E-value=8.2e-13 Score=148.15 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=82.9
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+|+|+ |+||+..+ .+|+|++. +++|+|||||||||+|++| .|...|++ |.|.++|..+.+ .....
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~I----AGfe~p~~--G~I~l~G~~i~~--lpp~k 76 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMI----AGFEQPSS--GEILLDGEDITD--VPPEK 76 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEECCC--CChhh
Confidence 5899999 79997666 88999986 9999999999999999999 99999999 999999988854 22345
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.+++| |+..+++.++|..+|.|.+.
T Consensus 77 R~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 77 RPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred cccceeecCcccCCCCcHHHHhhhhhh
Confidence 789999 99999999999999999887
No 89
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.35 E-value=1.9e-12 Score=150.36 Aligned_cols=121 Identities=21% Similarity=0.263 Sum_probs=97.7
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~-- 1242 (1491)
...+||=++++++ .| .+.+|+..+..... ....+||+||++.+|+++++.+|+.|. .
T Consensus 40 GsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~---------------~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~ 104 (353)
T TIGR03265 40 GCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP---------------QKRDYGIVFQSYALFPNLTVADNIAYGLKNR 104 (353)
T ss_pred CCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH---------------HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc
Confidence 3567888888887 33 26777776643221 013599999999999999999997331 1
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||++||+... . ...
T Consensus 105 ~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~ 184 (353)
T TIGR03265 105 GMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL 184 (353)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999987 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|++|
T Consensus 185 ~~tvi~vTHd~~ea~~l~----d~i~vl~~G 211 (353)
T TIGR03265 185 GVTTIMVTHDQEEALSMA----DRIVVMNHG 211 (353)
T ss_pred CCEEEEEcCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999988
No 90
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.35 E-value=2e-12 Score=148.51 Aligned_cols=121 Identities=17% Similarity=0.226 Sum_probs=94.5
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ .| .+.+++..+..... . . ...+||+||++.+++.+++.+++.++ .
T Consensus 30 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~-------~------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 95 (302)
T TIGR01188 30 AGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR-K-------V------RRSIGIVPQYASVDEDLTGRENLEMMGRLYG 95 (302)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEcccCHH-H-------H------HhhcEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 457777777776 33 25666655533211 0 0 12489999999999999998886321 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
. |+||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 96 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 175 (302)
T TIGR01188 96 LPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175 (302)
T ss_pred CCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 78999999999999999999999999999988 334589
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||++|||++++..+| |++++|.+|
T Consensus 176 tvi~~sH~~~~~~~~~----d~v~~l~~G 200 (302)
T TIGR01188 176 TILLTTHYMEEADKLC----DRIAIIDHG 200 (302)
T ss_pred EEEEECCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999887
No 91
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.1e-12 Score=141.00 Aligned_cols=63 Identities=29% Similarity=0.396 Sum_probs=58.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||+|||.+|+++|++|+|||||+|||+... +... |.|+|++|||++++..+| |++++|++|
T Consensus 143 qkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~a----d~v~vl~~G 215 (235)
T COG1122 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA----DRVVVLDDG 215 (235)
T ss_pred ceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999998 3344 689999999999999999 999999987
No 92
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=99.35 E-value=8.1e-08 Score=122.34 Aligned_cols=380 Identities=20% Similarity=0.260 Sum_probs=180.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHhhHHHHHHH
Q psy9513 850 DQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAG-MLKSLEDRKCELEGMDSVYQTE 928 (1491)
Q Consensus 850 ~~l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~-~~~~l~~~i~~~~~~~~~l~~~ 928 (1491)
..+..++.+++.++..+..++..+..++..+...+..++..+..+.......-+... ....++.++..+..........
T Consensus 205 ~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 205 SSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666666666666666555554433333 4556667777777776666666
Q ss_pred HHHHhhhhcch---HHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH------
Q psy9513 929 LEELGRKVAPI---ETQLNLAQSELDALKKEH-KK-KLNEEGAKIQDYTKQL-------EEVKRIKLEILNYTK------ 990 (1491)
Q Consensus 929 l~~~~~~~~~l---~~~~~~l~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~-------~~l~~~~~~i~~~~~------ 990 (1491)
+..+.....++ ..-+..+...+....... .. ..+.+......+.... ..+..+...+.....
T Consensus 285 l~~l~~~~~p~~l~~~ll~~~~~q~~~e~~~~~~~~~~~~l~~~~~~i~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 364 (650)
T TIGR03185 285 LRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAAELAEIDKPATTDS 364 (650)
T ss_pred HHHHhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccccccc
Confidence 66666554443 122222222222221110 00 1111111111111111 112222222221100
Q ss_pred ----cCCHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhchHhhHHHHHHHHHHHHHHHHH
Q psy9513 991 ----RGTLTQLAALRESVQK----LNQRKEDIIAKRGVCERTINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEEL 1062 (1491)
Q Consensus 991 ----~~~~~~l~~~~~~~~~----l~~~~~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~l 1062 (1491)
......+..+..-+.. ....+..+..++..+..++..+..++..... ...+......++.+..++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-------~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 365 EIPHRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS-------EEQIAQLLEELGEAQNEL 437 (650)
T ss_pred cccccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHHHHHH
Confidence 0112222222222221 2223333444444444455544444443221 122333333444444444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy9513 1063 KLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINR 1142 (1491)
Q Consensus 1063 ~~l~~~~~~l~~~~~~L~~~~i~~~~~e~~~~~k~i~~y~~~~~~~~~~~~~~~dl~~~~~~l~~~~~~y~~~k~~~in~ 1142 (1491)
..+...+..+......+.. .+.....++ .++.....+.....-.+.-..+...+|+.-.......++..+..
T Consensus 438 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~ 509 (650)
T TIGR03185 438 FRSEAEIEELLRQLETLKE-AIEALRKTL-------DEKTKQKINAFELERAITIADKAKKTLKEFREKLLERKLQQLEE 509 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333322222 111111111 11111111111111111112233334444344455566778888
Q ss_pred HHHHHHhcccCCC-cceeEEeeccCCCCCCCcccceeEEEEe-ccccccccccccchhhHHHHHHHHHHhhhhcccceEE
Q psy9513 1143 LIREYWTRIYQGN-DIDYISIAADVGTGSEKRRTYNYRVVQK-KNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLI 1220 (1491)
Q Consensus 1143 ~~~e~~~~~~~G~-~i~~i~I~~~~~~~~~~~~~yn~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~ 1220 (1491)
.+.+++..++.+. .+..+.|..+ +|.|... .+|..++...+ |+|++.+.++++++
T Consensus 510 ~~~~~f~~l~~k~~~~~~v~id~~-----------~~~~~l~~~~g~~~~~~~l-S~Ge~~~~~la~~~----------- 566 (650)
T TIGR03185 510 EITKSFKKLMRKHNLISRLKIDPE-----------TFAVSLYDNNGKHIDKERL-SAGERQILAIALLW----------- 566 (650)
T ss_pred HHHHHHHHHhcccCceeEEEEcCC-----------ceeEEEEcCCCCCcCCCCC-CHHHHHHHHHHHHH-----------
Confidence 8889999888764 3555666421 2334334 45666665555 66666665777777
Q ss_pred EEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------HhhcCceEEEEccCHHHH
Q psy9513 1221 VITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA-------SDQKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1221 ~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-------~~~~~~~~i~~thd~~~~ 1293 (1491)
||+++.....|+ ++|+||+.||+.++ ......|||++|||.++.
T Consensus 567 ----------------------------al~~~~~~~~p~-iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~ 617 (650)
T TIGR03185 567 ----------------------------GLAKVSGRRLPV-IIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVD 617 (650)
T ss_pred ----------------------------HHHHhcCCCCCE-EEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhC
Confidence 888877766777 46999999999887 123367999999987776
Q ss_pred HHH
Q psy9513 1294 ENL 1296 (1491)
Q Consensus 1294 ~~~ 1296 (1491)
..+
T Consensus 618 ~~~ 620 (650)
T TIGR03185 618 EKH 620 (650)
T ss_pred HHH
Confidence 644
No 93
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.35 E-value=2.2e-12 Score=150.36 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=97.2
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~-- 1242 (1491)
+..+||=++++++ .| .+.+|+..+..... ....+||+||++.+|+++++.+|+.| ..
T Consensus 50 GsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---------------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 114 (375)
T PRK09452 50 GCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA---------------ENRHVNTVFQSYALFPHMTVFENVAFGLRMQ 114 (375)
T ss_pred CCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---------------HHCCEEEEecCcccCCCCCHHHHHHHHHhhc
Confidence 3467888888887 33 26777776643211 01369999999999999999998732 11
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||+|||+... .. ..
T Consensus 115 ~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~ 194 (375)
T PRK09452 115 KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL 194 (375)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999988 22 34
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 195 g~tiI~vTHd~~ea~~la----Dri~vl~~G 221 (375)
T PRK09452 195 GITFVFVTHDQEEALTMS----DRIVVMRDG 221 (375)
T ss_pred CCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 94
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.34 E-value=2.4e-12 Score=150.44 Aligned_cols=121 Identities=17% Similarity=0.217 Sum_probs=96.5
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~-- 1242 (1491)
+..+||=++++++ .| .+.+|+..+..... ....+||+||++.+|++|++.+|+.+ ..
T Consensus 55 GsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~ 119 (377)
T PRK11607 55 GCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP---------------YQRPINMMFQSYALFPHMTVEQNIAFGLKQD 119 (377)
T ss_pred CCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---------------HHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 3467788887777 22 26677766543211 01369999999999999999999732 11
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||++||+... ....
T Consensus 120 ~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 199 (377)
T PRK11607 120 KLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV 199 (377)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 68999999999999999999999999999987 2234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 200 g~tii~vTHd~~ea~~la----Dri~vl~~G 226 (377)
T PRK11607 200 GVTCVMVTHDQEEAMTMA----GRIAIMNRG 226 (377)
T ss_pred CCEEEEEcCCHHHHHHhC----CEEEEEeCC
Confidence 899999999999999999 999999887
No 95
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.34 E-value=2.8e-12 Score=135.68 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=94.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch---hhhhhhhhHHHHhHHH-
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE---EFIENLTAIDRAYVVR- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~---~~~~~L~~~~~~~~~~- 1242 (1491)
..+||=++++++ .| .+.+|+..+........ . ...++|+||++ .|++.++..+++.++.
T Consensus 37 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~------~------~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 37 NGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDA------I------RAGIAYVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHH------H------hCCeEEecCCcccCcccCCCcHHHHHHHHhh
Confidence 356777777776 22 25566655543321000 0 12589999995 6888999999974432
Q ss_pred H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1243 I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1243 l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|.+|
T Consensus 105 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~----d~v~~l~~G 180 (182)
T cd03215 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLC----DRILVMYEG 180 (182)
T ss_pred cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC----CEEEEecCC
Confidence 3 89999999999999999999999999999987 2335789999999999999999 999999776
No 96
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-12 Score=132.51 Aligned_cols=96 Identities=13% Similarity=0.227 Sum_probs=83.0
Q ss_pred ceeeecc-ccc-CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC---cH
Q psy9513 6 QLHIMGI-RNF-PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK---DE 76 (1491)
Q Consensus 6 ~l~i~~~-~~~-~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~---~~ 76 (1491)
.|+++|+ +.| +++.. .+|+|.++ +++|+||+||||||||++| .|..+|++ |.++++|..+.+. ..
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~l----ngl~d~t~--G~i~~~g~~i~~~~~k~l 76 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSL----NGLVDPTS--GEILFNGVQITKLKGKEL 76 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHH----hcccCCCc--ceEEecccchhccchHHH
Confidence 3889999 799 76667 99999987 9999999999999999999 99999998 9999999776542 23
Q ss_pred HHhhcCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 77 ASASSGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 77 ~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
...+..+||+ |.+++.+..+|..+|...+.+
T Consensus 77 r~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~ 108 (258)
T COG3638 77 RKLRRDIGMIFQQFNLVPRLSVLENVLLGRLG 108 (258)
T ss_pred HHHHHhceeEeccCCcccccHHHHHHHhhhcc
Confidence 4567889999 999999999999999887654
No 97
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=2e-12 Score=136.31 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=94.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHh--HHHHh
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAY--VVRIV 1244 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~--~~~l~ 1244 (1491)
..+||=++++++ .| .+.+|..++.+...... . ...+++|+||++.++++++..++.. +..-+
T Consensus 37 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~------~-----~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~ 105 (178)
T cd03229 37 SGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELP------P-----LRRRIGMVFQDFALFPHLTVLENIALGLSGGQ 105 (178)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEccccchhHH------H-----HhhcEEEEecCCccCCCCCHHHheeecCCHHH
Confidence 346666666665 22 25566665544321000 0 0136999999999999999999874 45558
Q ss_pred hhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1245 RDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+||++||+||+.+|++++|||||+|||+.+. .... +.|+|+||||.+++..+| |+++.|.+|
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~g 177 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA----DRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEeCC
Confidence 9999999999999999999999999999988 2333 689999999999999999 999999765
No 98
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.34 E-value=1.8e-12 Score=122.29 Aligned_cols=89 Identities=18% Similarity=0.272 Sum_probs=78.5
Q ss_pred eEEEEccchhhhhhhhhHHHH--hHHHH-----------------------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRA--YVVRI-----------------------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~--~~~~l-----------------------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.+|.+||..++.|+|++.+|+ -|.++ +.|||||||||+++|.+
T Consensus 83 ~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqv 162 (242)
T COG4161 83 NVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred hhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcE
Confidence 479999999999999999996 34332 57999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++||||++|||+-. ....|+|-++|||..+++..++ .+++.|.+|
T Consensus 163 llfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~a----s~vvyme~g 217 (242)
T COG4161 163 LLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTA----SRVVYMENG 217 (242)
T ss_pred EeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhh----hheEeeecC
Confidence 999999999999866 4566999999999999999999 888888777
No 99
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.33 E-value=3.5e-12 Score=148.13 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=95.9
Q ss_pred CcccceeEEEEe--ccc---cccccc----cccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMR----NRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~----~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~- 1241 (1491)
..+||=+++++. .|+ +.+|+. .+.......+ +.+| ..+++|+||++.+++++++.+|+.+.
T Consensus 61 sGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l-----~~~r----~~~i~~vfQ~~~l~p~~Tv~eNi~~~~ 131 (382)
T TIGR03415 61 SGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATL-----RRLR----THRVSMVFQKFALMPWLTVEENVAFGL 131 (382)
T ss_pred CcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHH-----HHHh----cCCEEEEECCCcCCCCCcHHHHHHHHH
Confidence 456777777766 332 556654 3333322222 1112 34799999999999999999986321
Q ss_pred H------------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 R------------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ~------------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
. . |+||++|||||+.+|++|+|||||++||+... ..
T Consensus 132 ~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~ 211 (382)
T TIGR03415 132 EMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQ 211 (382)
T ss_pred HhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 0 0 68999999999999999999999999999987 22
Q ss_pred h-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 Q-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. .+.|+|+||||++++..+| |++++|.+|
T Consensus 212 ~~~~~TII~iTHdl~e~~~l~----DrI~vl~~G 241 (382)
T TIGR03415 212 AKLNKTIIFVSHDLDEALKIG----NRIAIMEGG 241 (382)
T ss_pred HhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3 3899999999999999999 999999887
No 100
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.33 E-value=2.7e-12 Score=134.62 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=90.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhh
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1246 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~ 1246 (1491)
..+||=++++++ .| .+.+|+..+.......+ ..+++|++|++.+++. +..+++ +..-++|
T Consensus 39 sGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~~-tv~~~l-LS~G~~q 103 (173)
T cd03246 39 SGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-------------GDHVGYLPQDDELFSG-SIAENI-LSGGQRQ 103 (173)
T ss_pred CCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-------------HhheEEECCCCccccC-cHHHHC-cCHHHHH
Confidence 346666666666 22 25566665544322111 1258999999988874 888887 4555899
Q ss_pred HHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1247 HKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1247 ~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++||+||+.+|++|+|||||++||+.+. ....|.|+|++|||.+++. +| |+++.|++|
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~~----d~v~~l~~G 171 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-SA----DRILVLEDG 171 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC----CEEEEEECC
Confidence 99999999999999999999999999987 2345889999999999885 78 999999876
No 101
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.32 E-value=1.6e-12 Score=133.16 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=88.3
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
.|+++|+ ++||+..+ .+|+|+++ +++|+||+|||||||+++| .|+.+|.+ |.|.++|.++.+.+. .
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I----~Gll~P~~--GeI~i~G~~i~~ls~~~~~ 81 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLI----LGLLRPDK--GEILIDGEDIPQLSEEELY 81 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHH----hccCCCCC--CeEEEcCcchhccCHHHHH
Confidence 6999999 79998877 99999997 9999999999999999999 99999998 999999998865333 3
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhccccCCC
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQCTCENND 111 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~~~~ 111 (1491)
.++.+++++ |...++...+|..||.+.+..+...
T Consensus 82 ~ir~r~GvlFQ~gALFssltV~eNVafplre~~~l 116 (263)
T COG1127 82 EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKL 116 (263)
T ss_pred HHHhheeEEeeccccccccchhHhhheehHhhccC
Confidence 677889999 9999999999999999988765543
No 102
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.32 E-value=5.1e-12 Score=138.00 Aligned_cols=89 Identities=22% Similarity=0.303 Sum_probs=76.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH---------H----H-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV---------R----I-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~---------~----l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.+++.++..+++.+. . + ++||++||+||+.+|++|
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~l 152 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLL 152 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 599999999999888888775210 0 0 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. ... .|.+||++|||.+++..+| |+++.|.+|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~----d~v~~l~~G 207 (213)
T cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALA----DRIAVMNEG 207 (213)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhc----CEEEEEECC
Confidence 99999999999988 222 4889999999999999999 999999876
No 103
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.32 E-value=4.9e-12 Score=138.38 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=93.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.++...+........ . .....++|+||++.+++.++..+++.+.
T Consensus 39 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~-----~-----~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (214)
T TIGR02673 39 AGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQL-----P-----LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG 108 (214)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH-----H-----HHHhheEEEecChhhccCCcHHHHHHHHHHHcC
Confidence 356777777766 22 25566655544322111 0 0113589999999999988888775221
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (214)
T TIGR02673 109 KKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGT 188 (214)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCC
Confidence 00 68999999999999999999999999999998 223588
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|+||||.+++..+| |++++|++|
T Consensus 189 tii~~tH~~~~~~~~~----d~i~~l~~G 213 (214)
T TIGR02673 189 TVIVATHDLSLVDRVA----HRVIILDDG 213 (214)
T ss_pred EEEEEeCCHHHHHHhc----CEEEEecCC
Confidence 9999999999999999 999999765
No 104
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.31 E-value=5.4e-12 Score=137.27 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=77.3
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV---------RI-----------------------VRDHKALAETFSRNCGIFALDE 1265 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDE 1265 (1491)
.++|+||++.+++.+++.+++.++ .+ ++||++||+||+.+|++|+|||
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 152 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDE 152 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 589999999999999988875221 01 6899999999999999999999
Q ss_pred CCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1266 PTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1266 p~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||+|||+.+. ....|.++|++|||.+++..+| |+++.|++|
T Consensus 153 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~----d~v~~l~~g 202 (208)
T cd03268 153 PTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVA----DRIGIINKG 202 (208)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc----CEEEEEECC
Confidence 9999999988 2335889999999999999999 999999876
No 105
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.31 E-value=4.9e-12 Score=145.41 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=92.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHh-HHH---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAY-VVR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~-~~~--- 1242 (1491)
..+||=++++++ .| .+.+++..+..... . ...++||+||++.+++.+++.+++. +..
T Consensus 41 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---------~-----~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 106 (303)
T TIGR01288 41 AGKSTIARMLLGMISPDRGKITVLGEPVPSRAR---------L-----ARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG 106 (303)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECcccHH---------H-----HhhcEEEEeccccCCcCCcHHHHHHHHHHHcC
Confidence 456777777776 33 25555554432111 0 0135999999999999999888763 110
Q ss_pred ------------H--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ------------I--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ------------l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 107 ~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~ 186 (303)
T TIGR01288 107 MSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGK 186 (303)
T ss_pred CCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 0 68999999999999999999999999999988 234589
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||++|||++++..+| |+++.|.+|
T Consensus 187 til~~sH~~~~~~~~~----d~i~~l~~G 211 (303)
T TIGR01288 187 TILLTTHFMEEAERLC----DRLCVLESG 211 (303)
T ss_pred EEEEECCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999877
No 106
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=5.5e-12 Score=140.02 Aligned_cols=125 Identities=14% Similarity=0.211 Sum_probs=92.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|+..+........ ..+ ...++|+||++.+++.+++.+++.+.
T Consensus 37 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~-----~~~-----~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 106 (235)
T cd03261 37 SGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAEL-----YRL-----RRRMGMLFQSGALFDSLTVFENVAFPLREHT 106 (235)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEccccChhhH-----HHH-----hcceEEEccCcccCCCCcHHHHHHHHHhhcc
Confidence 456777777776 33 25566655433221000 000 12599999999999998888875210
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ... .
T Consensus 107 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~ 186 (235)
T cd03261 107 RLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186 (235)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 00 68999999999999999999999999999988 223 4
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++..+| |++++|.+|
T Consensus 187 ~~tvi~vsH~~~~~~~~~----d~v~~l~~G 213 (235)
T cd03261 187 GLTSIMVTHDLDTAFAIA----DRIAVLYDG 213 (235)
T ss_pred CcEEEEEecCHHHHHHhc----CEEEEEECC
Confidence 789999999999999999 999999877
No 107
>KOG0933|consensus
Probab=99.30 E-value=1.6e-05 Score=96.71 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=64.9
Q ss_pred HHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhhccc
Q psy9513 1137 MRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKN 1216 (1491)
Q Consensus 1137 ~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n 1216 (1491)
...+|.-|..+|..+--|... .+....|.. -+..|.|-+.=++++-+.=.=.|+|+++| +++.|
T Consensus 1032 w~~VN~dFG~IFs~LLPga~A---kL~Ppeg~~----~~dGLEvkV~~G~iWKeSL~ELSGGQRSL--VALsL------- 1095 (1174)
T KOG0933|consen 1032 WEKVNKDFGSIFSTLLPGAMA---KLEPPEGKT----VLDGLEVKVKFGGIWKESLSELSGGQRSL--VALSL------- 1095 (1174)
T ss_pred HHHHhhhHHHHHHHhCCCccc---cccCCCCCc----cccceEEEEEeCccHHHHHHHhcCchHHH--HHHHH-------
Confidence 455677777777777777632 222222221 12234433334556666655668888776 23333
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEcc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITH 1288 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~th 1288 (1491)
-+|.-...+.|+.||||.-++||..+. .+-.+.++|+||-
T Consensus 1096 --------------------------------IlamL~fkPAPlYILDEVDAALDLSHTQNIG~mIkthF~~sQFIVVSL 1143 (1174)
T KOG0933|consen 1096 --------------------------------ILAMLKFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFTHSQFIVVSL 1143 (1174)
T ss_pred --------------------------------HHHHHcCCCCceeehhhhHHhhcchhhhhHHHHHHhhCCCCeEEEEEc
Confidence 344444566799999999999998887 2234678998875
Q ss_pred CH
Q psy9513 1289 DE 1290 (1491)
Q Consensus 1289 d~ 1290 (1491)
-.
T Consensus 1144 Ke 1145 (1174)
T KOG0933|consen 1144 KE 1145 (1174)
T ss_pred hh
Confidence 43
No 108
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=2.2e-12 Score=133.83 Aligned_cols=127 Identities=16% Similarity=0.211 Sum_probs=99.5
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH---
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR--- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~--- 1242 (1491)
...+|+=+++|++ +|. +.+|++-+-+....+ |+-+. ...+||+|||-.+|+++++..|+.|..
T Consensus 34 GsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i--~lp~~-------~RriGYVFQDARLFpH~tVrgNL~YG~~~~ 104 (352)
T COG4148 34 GSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI--FLPPE-------KRRIGYVFQDARLFPHYTVRGNLRYGMWKS 104 (352)
T ss_pred CCChhhHHHHHhccCCccccEEEECCEEeecccCCc--ccChh-------hheeeeEeeccccccceEEecchhhhhccc
Confidence 3456777777776 443 677777666554422 12221 246999999999999999998874421
Q ss_pred -------H--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEE
Q psy9513 1243 -------I--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIV 1285 (1491)
Q Consensus 1243 -------l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~ 1285 (1491)
+ .+|||||+|||...|++|+||||.++||.... ...-++-|++
T Consensus 105 ~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlY 184 (352)
T COG4148 105 MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY 184 (352)
T ss_pred chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEE
Confidence 1 58999999999999999999999999998776 2344788999
Q ss_pred EccCHHHHHHHhccccceEEEEecC
Q psy9513 1286 ITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1286 ~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||.++++.+++ |+++.|.+|
T Consensus 185 VSHS~~Ev~RLA----d~vV~le~G 205 (352)
T COG4148 185 VSHSLDEVLRLA----DRVVVLENG 205 (352)
T ss_pred EecCHHHHHhhh----heEEEecCC
Confidence 999999999999 999999988
No 109
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.30 E-value=4.7e-12 Score=148.18 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=87.8
Q ss_pred cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHH----------------------------
Q psy9513 1187 IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAID---------------------------- 1236 (1491)
Q Consensus 1187 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~---------------------------- 1236 (1491)
+-+++.+++.+.+..+ +.-+-..++||||+| .|-|.++...
T Consensus 70 I~~~g~dl~~l~~~~~---------r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V 140 (539)
T COG1123 70 VILDGRDLLGLSEREM---------RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140 (539)
T ss_pred EEECCcchhcCCHHHH---------HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence 6777888888887554 334456799999997 2222222211
Q ss_pred ------HH--hHHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHH
Q psy9513 1237 ------RA--YVVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIEN 1295 (1491)
Q Consensus 1237 ------~~--~~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~ 1295 (1491)
.. ||+++ ||||+.||+||+.+|++||+||||++||+.+. ....|.++|+||||+..+..
T Consensus 141 gl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~ 220 (539)
T COG1123 141 GLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAE 220 (539)
T ss_pred CCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHH
Confidence 11 44444 89999999999999999999999999999887 34579999999999999999
Q ss_pred HhccccceEEEEecC
Q psy9513 1296 LTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1296 ~~~~~~~~~~~l~~~ 1310 (1491)
+| |++++|.+|
T Consensus 221 ~a----Drv~Vm~~G 231 (539)
T COG1123 221 LA----DRVVVMYKG 231 (539)
T ss_pred hc----CeEEEEECC
Confidence 99 999999998
No 110
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.30 E-value=6.1e-12 Score=146.18 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=96.4
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
...+||=++++++ .|+ +.+|+..+..... ....+||+||++.+++++++.+|+.+.
T Consensus 38 GsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~ 102 (353)
T PRK10851 38 GSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA---------------RDRKVGFVFQHYALFRHMTVFDNIAFGLTVL 102 (353)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---------------HHCCEEEEecCcccCCCCcHHHHHHhhhhhc
Confidence 3467888888877 332 6677776643211 013599999999999999999886321
Q ss_pred -------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H
Q psy9513 1242 -------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S 1276 (1491)
Q Consensus 1242 -------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~ 1276 (1491)
++ ++||++|||||+.+|++|+|||||+|||+.+. .
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l 182 (353)
T PRK10851 103 PRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182 (353)
T ss_pred ccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999998 2
Q ss_pred h-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 D-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. ..|.|+|+||||.+++..+| |++++|.+|
T Consensus 183 ~~~~g~tii~vTHd~~ea~~~~----Dri~vl~~G 213 (353)
T PRK10851 183 HEELKFTSVFVTHDQEEAMEVA----DRVVVMSQG 213 (353)
T ss_pred HHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 2 33889999999999999999 999999887
No 111
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.30 E-value=7.2e-12 Score=137.16 Aligned_cols=125 Identities=18% Similarity=0.269 Sum_probs=93.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|...+........ ..+| ..++|+||++.+++.++..+++.++
T Consensus 38 sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~-----~~~~-----~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~ 107 (214)
T cd03292 38 AGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAI-----PYLR-----RKIGVVFQDFRLLPDRNVYENVAFALEVTG 107 (214)
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHH-----HHHH-----HheEEEecCchhccCCcHHHHHHHHHHHcC
Confidence 456777777776 22 25566665543321111 0111 2599999999999998888875321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 187 (214)
T cd03292 108 VPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGT 187 (214)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCC
Confidence 00 68999999999999999999999999999988 234588
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|++|||.+++..+| |++++|.+|
T Consensus 188 tiiivtH~~~~~~~~~----d~i~~l~~G 212 (214)
T cd03292 188 TVVVATHAKELVDTTR----HRVIALERG 212 (214)
T ss_pred EEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 9999999999999999 999999776
No 112
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.30 E-value=6.8e-12 Score=144.76 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=92.2
Q ss_pred CcccceeEEEEe--cc-----c-cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHHh--
Q psy9513 1172 KRRTYNYRVVQK--KN-----G-IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRAY-- 1239 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~-----~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~~-- 1239 (1491)
..+||=++++++ .| | +.+|+..+..+....+ +. .+...++||||++ .|.+.++..+++.
T Consensus 53 sGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~-----~~----~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~ 123 (330)
T PRK09473 53 SGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL-----NK----LRAEQISMIFQDPMTSLNPYMRVGEQLMEV 123 (330)
T ss_pred chHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH-----HH----HhcCCEEEEEcCchhhcCCCCCHHHHHHHH
Confidence 456666666665 33 2 6667776665544333 11 1234699999998 5666666444321
Q ss_pred -----------------------------------HHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------
Q psy9513 1240 -----------------------------------VVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------ 1275 (1491)
Q Consensus 1240 -----------------------------------~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------ 1275 (1491)
|.++ |+||++||+||+.+|++||+||||++||+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~l 203 (330)
T PRK09473 124 LMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203 (330)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 0011 68999999999999999999999999999988
Q ss_pred ---Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ---SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ---~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
... .|.|+|+||||++++..+| |++++|..|
T Consensus 204 L~~l~~~~g~til~iTHdl~~~~~~~----Dri~vm~~G 238 (330)
T PRK09473 204 LNELKREFNTAIIMITHDLGVVAGIC----DKVLVMYAG 238 (330)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 223 4899999999999999999 999999887
No 113
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.30 E-value=7.7e-12 Score=137.30 Aligned_cols=121 Identities=21% Similarity=0.197 Sum_probs=92.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||=++++++ .| .+.++...+..... .+| .+++|+||++.+++++++.+++.+ ..
T Consensus 42 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---------~~~-----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 107 (218)
T cd03266 42 AGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPA---------EAR-----RRLGFVSDSTGLYDRLTARENLEYFAGLYG 107 (218)
T ss_pred CCHHHHHHHHhCCcCCCCceEEECCEEcccCHH---------HHH-----hhEEEecCCcccCcCCCHHHHHHHHHHHcC
Confidence 356677777766 22 25566655532110 111 259999999999999998887521 10
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 108 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 187 (218)
T cd03266 108 LKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCC
Confidence 0 68999999999999999999999999999988 234588
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|+||||.+++..+| |+++.|.+|
T Consensus 188 tii~~tH~~~~~~~~~----d~i~~l~~G 212 (218)
T cd03266 188 CILFSTHIMQEVERLC----DRVVVLHRG 212 (218)
T ss_pred EEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 9999999999999999 999999876
No 114
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.30 E-value=6e-12 Score=147.67 Aligned_cols=120 Identities=16% Similarity=0.188 Sum_probs=94.6
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||=++++++ .|+ +.++...+..... ....+||+||++.+++++++.+|+.+ ..
T Consensus 40 sGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---------------~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~ 104 (369)
T PRK11000 40 CGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---------------AERGVGMVFQSYALYPHLSVAENMSFGLKLAG 104 (369)
T ss_pred CcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---------------hHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC
Confidence 467788887777 332 5666665533211 01259999999999999999988632 10
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
+ ++||++|||||+.+|++|+|||||+|||+.+. ... .|
T Consensus 105 ~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g 184 (369)
T PRK11000 105 AKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184 (369)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhC
Confidence 0 68999999999999999999999999999987 223 38
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+||||.+++..+| |++++|.+|
T Consensus 185 ~tvI~vTHd~~~~~~~~----d~i~vl~~G 210 (369)
T PRK11000 185 RTMIYVTHDQVEAMTLA----DKIVVLDAG 210 (369)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999887
No 115
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.29 E-value=6.9e-12 Score=146.88 Aligned_cols=126 Identities=14% Similarity=0.196 Sum_probs=97.5
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=+++++. .| .+.+|...+.......+ +. .....+||+||++.+++++++.+|+.+. .
T Consensus 65 sGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l-----~~----~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~ 135 (400)
T PRK10070 65 SGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAEL-----RE----VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG 135 (400)
T ss_pred chHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHH-----HH----HHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC
Confidence 457777777776 33 26677777655443222 10 1124699999999999999998886321 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcC
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKN 1280 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~ 1280 (1491)
+ ++||++||+||+.+|++|||||||+|||+.+. .. ..|
T Consensus 136 ~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g 215 (400)
T PRK10070 136 INAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215 (400)
T ss_pred CCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCC
Confidence 0 68999999999999999999999999999988 22 348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||++++..+| |+++.|.+|
T Consensus 216 ~TIIivTHd~~~~~~~~----Dri~vL~~G 241 (400)
T PRK10070 216 RTIVFISHDLDEAMRIG----DRIAIMQNG 241 (400)
T ss_pred CeEEEEECCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999887
No 116
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.29 E-value=7e-12 Score=137.64 Aligned_cols=125 Identities=18% Similarity=0.296 Sum_probs=91.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|..++........ . .....+++|+||++.+++++++.+++.+.
T Consensus 41 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~-----~----~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 111 (218)
T cd03255 41 SGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKEL-----A----AFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG 111 (218)
T ss_pred CCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHH-----H----HHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC
Confidence 356777777766 22 25566665544322111 0 00123599999999999998887775210
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ... .|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~ 191 (218)
T cd03255 112 VPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG 191 (218)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999988 223 48
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||.+++. +| |+++.|.+|
T Consensus 192 ~tii~~sH~~~~~~-~~----d~v~~l~~G 216 (218)
T cd03255 192 TTIVVVTHDPELAE-YA----DRIIELRDG 216 (218)
T ss_pred CeEEEEECCHHHHh-hh----cEEEEeeCC
Confidence 89999999999987 88 999999876
No 117
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.29 E-value=7.8e-12 Score=144.56 Aligned_cols=89 Identities=19% Similarity=0.284 Sum_probs=77.9
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-H------------H-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-R------------I-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-~------------l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.+++++++.+|+.+. . + ++||++|||||+.+|++|
T Consensus 43 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~ll 122 (325)
T TIGR01187 43 HINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKIL 122 (325)
T ss_pred CEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 599999999999999999886321 0 0 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. .. ..|.|+|+||||.+++..+| |++++|.+|
T Consensus 123 lLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~----d~i~vl~~G 177 (325)
T TIGR01187 123 LLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS----DRIAIMRKG 177 (325)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999987 22 24899999999999999999 999999887
No 118
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.29 E-value=7.4e-12 Score=133.79 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=78.2
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH----HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV----RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~----~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.++|+||++.++++++..+++.++ .+ ++||++||+||+.+|++++|||||++||+.+. ....|.
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~ 162 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR 162 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999999987432 23 89999999999999999999999999999988 233588
Q ss_pred eEEEEccCHH-HHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEE-FIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~-~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|++|||.+ .+..+| |++++|..|
T Consensus 163 tiii~sh~~~~~~~~~~----d~v~~l~~G 188 (194)
T cd03213 163 TIICSIHQPSSEIFELF----DKLLLLSQG 188 (194)
T ss_pred EEEEEecCchHHHHHhc----CEEEEEeCC
Confidence 9999999996 788889 999999876
No 119
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=9.9e-12 Score=135.55 Aligned_cols=89 Identities=20% Similarity=0.257 Sum_probs=76.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH---------H----H-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV---------R----I-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~---------~----l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.+++++++.+++.++ . + ++||++||+||+.+|++|
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 152 (211)
T cd03264 73 RIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSIL 152 (211)
T ss_pred heEEecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 589999999999999988775210 0 0 689999999999999999
Q ss_pred EEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|++|
T Consensus 153 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~----d~i~~l~~g 205 (211)
T cd03264 153 IVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC----NQVAVLNKG 205 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC----CEEEEEECC
Confidence 99999999999988 1223689999999999999999 999999876
No 120
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=8.9e-12 Score=145.05 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=95.0
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ .|+ +.+++..+.......+ +.+ ...+||+||++.+++.+++.+++.+. .
T Consensus 42 sGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~-----~~~-----~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~ 111 (343)
T PRK11153 42 AGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL-----RKA-----RRQIGMIFQHFNLLSSRTVFDNVALPLELAG 111 (343)
T ss_pred CcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH-----HHH-----hcCEEEEeCCCccCCCCcHHHHHHHHHHHcC
Confidence 457777777776 332 5666666554322111 111 13599999999999999988875221 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ... .|
T Consensus 112 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g 191 (343)
T PRK11153 112 TPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELG 191 (343)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 68999999999999999999999999999988 222 38
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||++++..+| |++++|.+|
T Consensus 192 ~tiilvtH~~~~i~~~~----d~v~~l~~G 217 (343)
T PRK11153 192 LTIVLITHEMDVVKRIC----DRVAVIDAG 217 (343)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999877
No 121
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.28 E-value=9.9e-12 Score=137.90 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=92.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||=++++++ .| .+.+++..+........ ....++|+||++.+++++++.+++.+ ..
T Consensus 37 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~------------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (232)
T cd03218 37 AGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR------------ARLGIGYLPQEASIFRKLTVEENILAVLEIRG 104 (232)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHH------------HhccEEEecCCccccccCcHHHHHHHHHHhcC
Confidence 356777777765 22 25566655543222111 01258999999999999998887522 10
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ....+.
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 184 (232)
T cd03218 105 LSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGI 184 (232)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 0 68999999999999999999999999999987 234588
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|++|||.+++..+| |++++|.+|
T Consensus 185 tii~~sH~~~~~~~~~----d~i~~l~~G 209 (232)
T cd03218 185 GVLITDHNVRETLSIT----DRAYIIYEG 209 (232)
T ss_pred EEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999877
No 122
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=1.1e-11 Score=135.94 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=75.9
Q ss_pred ceEEEEccchhhhhhhhhHHHHhH-HH------------H-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYV-VR------------I-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~-~~------------l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
..++|+||++.+++.++..+++.+ .. + ++||++||+||+.+|++
T Consensus 73 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 152 (220)
T cd03293 73 PDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV 152 (220)
T ss_pred CcEEEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 469999999999988888877521 10 0 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1261 FALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|+|||||+|||+.+. . ...|.|||+||||.+++..+| |+++.|.+
T Consensus 153 llLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~ 207 (220)
T cd03293 153 LLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLA----DRVVVLSA 207 (220)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhC----CEEEEEEC
Confidence 999999999999998 2 234789999999999999999 99999984
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=7.4e-12 Score=142.93 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~a----drv~vl~~G 241 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT----KRTIFFKDG 241 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 2345899999999999999999 999999887
No 124
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.28 E-value=1.2e-11 Score=134.08 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=74.2
Q ss_pred eEEEEccchhh-hhhhhhHHHHhHH---------HH-----------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1218 QLIVITHDEEF-IENLTAIDRAYVV---------RI-----------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1218 ~l~~i~~~~~~-~~~L~~~~~~~~~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
.++|+||++.+ +..++..+++.++ .+ ++||++||+||+.+|++|+||
T Consensus 72 ~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 151 (205)
T cd03226 72 SIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD 151 (205)
T ss_pred ceEEEecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 58999999853 3456777775221 11 689999999999999999999
Q ss_pred CCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1265 EPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||+|||+.+. ....|.++|++|||++++..+| |+++.|.+|
T Consensus 152 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~G 202 (205)
T cd03226 152 EPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC----DRVLLLANG 202 (205)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999988 2345889999999999999999 999999876
No 125
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.28 E-value=1.1e-11 Score=135.38 Aligned_cols=122 Identities=17% Similarity=0.220 Sum_probs=89.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhh-hhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEF-IENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~-~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ .| .+.+|...+........ ...++|+||++.+ ++.++..+++.+.
T Consensus 38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~ 104 (211)
T cd03225 38 SGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKEL-------------RRKVGLVFQNPDDQFFGPTVEEEVAFGLENL 104 (211)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHH-------------HhhceEEecChhhhcCCCcHHHHHHHHHHHc
Confidence 456777777766 22 25566655543211111 1248999999853 5567776664210
Q ss_pred ---------H---H--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 ---------R---I--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 ---------~---l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ....|
T Consensus 105 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 184 (211)
T cd03225 105 GLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEG 184 (211)
T ss_pred CCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 0 0 68999999999999999999999999999988 23348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.++|+||||.+++..+| |+++.|.+|
T Consensus 185 ~tvi~~sH~~~~~~~~~----d~i~~l~~G 210 (211)
T cd03225 185 KTIIIVTHDLDLLLELA----DRVIVLEDG 210 (211)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 89999999999999999 999999765
No 126
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.28 E-value=1.3e-11 Score=142.26 Aligned_cols=126 Identities=14% Similarity=0.179 Sum_probs=91.1
Q ss_pred CcccceeEEEEe--cc-------ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHH-h
Q psy9513 1172 KRRTYNYRVVQK--KN-------GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRA-Y 1239 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~-~ 1239 (1491)
..+||=++++++ .+ .+.+|+.++..+....+ .......++||||++ .|.+.++..+++ .
T Consensus 44 sGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~---------~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~ 114 (326)
T PRK11022 44 SGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER---------RNLVGAEVAMIFQDPMTSLNPCYTVGFQIME 114 (326)
T ss_pred ChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH---------HHHhCCCEEEEecCchhhcCCcCCHHHHHHH
Confidence 456666666665 21 15677777665544333 111234699999998 356555543221 0
Q ss_pred ------------------------------------HHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-----
Q psy9513 1240 ------------------------------------VVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----- 1275 (1491)
Q Consensus 1240 ------------------------------------~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----- 1275 (1491)
|..+ |+||++||+||+.+|++||+||||++||+.+.
T Consensus 115 ~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~ 194 (326)
T PRK11022 115 AIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194 (326)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 0011 79999999999999999999999999999987
Q ss_pred ----Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ----SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ----~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. ..|.|+|+||||++++..+| |++++|..|
T Consensus 195 lL~~l~~~~g~til~iTHdl~~~~~~a----dri~vm~~G 230 (326)
T PRK11022 195 LLLELQQKENMALVLITHDLALVAEAA----HKIIVMYAG 230 (326)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 22 35899999999999999999 999999887
No 127
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.28 E-value=1.1e-11 Score=136.01 Aligned_cols=121 Identities=20% Similarity=0.271 Sum_probs=91.4
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.++...+..... .. ...++|+||++.+++.+++.+++.++
T Consensus 37 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~--------~~------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 102 (220)
T cd03265 37 AGKTTTIKMLTTLLKPTSGRATVAGHDVVREPR--------EV------RRRIGIVFQDLSVDDELTGWENLYIHARLYG 102 (220)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEecCcChH--------HH------hhcEEEecCCccccccCcHHHHHHHHHHHcC
Confidence 457777777776 332 5555554432110 00 12489999999999988887765221
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-C
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-N 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. .... |
T Consensus 103 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 182 (220)
T cd03265 103 VPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999988 2233 7
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.++|++|||.+++..+| |++++|.+|
T Consensus 183 ~tvi~~tH~~~~~~~~~----d~i~~l~~G 208 (220)
T cd03265 183 MTILLTTHYMEEAEQLC----DRVAIIDHG 208 (220)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 89999999999999999 999999877
No 128
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.27 E-value=1.2e-11 Score=134.73 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=76.8
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-H------------H-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-R------------I-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-~------------l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.++++++..+++.++ . + ++||++||+||+.+|+++
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l 150 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL 150 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 689999999999988888775221 0 0 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. ....+.|||++|||.+++..+| |+++.|.+|
T Consensus 151 llDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~g 204 (210)
T cd03269 151 ILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELC----DRVLLLNKG 204 (210)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhh----hEEEEEeCC
Confidence 99999999999987 2345789999999999999999 999999876
No 129
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.27 E-value=1.6e-11 Score=126.90 Aligned_cols=123 Identities=17% Similarity=0.245 Sum_probs=99.9
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH---H-
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---R- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---~- 1242 (1491)
..+||=++++.+ +|+ +.++++.|..+.-.. +.++ .++..||.+.+|++||+.+|+... +
T Consensus 41 AGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~----iar~--------Gi~RTFQ~~rlF~~lTVlENv~va~~~~~ 108 (250)
T COG0411 41 AGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHR----IARL--------GIARTFQITRLFPGLTVLENVAVGAHARL 108 (250)
T ss_pred CCceeeeeeecccccCCCceEEECCcccCCCCHHH----HHhc--------cceeecccccccCCCcHHHHHHHHhhhhh
Confidence 457788888887 554 888998888877533 2343 778889999999999999986331 0
Q ss_pred --------------H------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---
Q psy9513 1243 --------------I------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--- 1275 (1491)
Q Consensus 1243 --------------l------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--- 1275 (1491)
. .+.++.|||||+.+|++|+||||.+||.+.-.
T Consensus 109 ~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l 188 (250)
T COG0411 109 GLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188 (250)
T ss_pred hhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHH
Confidence 0 35779999999999999999999999998776
Q ss_pred ------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
... .|.||++|-||++++..+| ||+++|+.|
T Consensus 189 ~~~i~~i~~~~g~tillIEHdM~~Vm~l~----dri~Vl~~G 226 (250)
T COG0411 189 AELIRELRDRGGVTILLIEHDMKLVMGLA----DRIVVLNYG 226 (250)
T ss_pred HHHHHHHHhcCCcEEEEEEeccHHHhhhc----cEEEeccCC
Confidence 333 5699999999999999999 999999988
No 130
>KOG0250|consensus
Probab=99.27 E-value=2.9e-05 Score=96.54 Aligned_cols=41 Identities=32% Similarity=0.397 Sum_probs=30.0
Q ss_pred hcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEc-cCHHHHHH
Q psy9513 1255 SRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVIT-HDEEFIEN 1295 (1491)
Q Consensus 1255 ~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~t-hd~~~~~~ 1295 (1491)
++.+|+-.|||--..+|..++ ....+.|+||+| ||+..+..
T Consensus 1009 ~me~Pfr~LDEFDVFMD~vNRKi~~dlLv~~a~~~~~Q~IfiTPqdi~~l~~ 1060 (1074)
T KOG0250|consen 1009 VMECPFRALDEFDVFMDMVNRKISMDLLVDFAKKKGRQFIFITPQDISKLNS 1060 (1074)
T ss_pred hhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEccccHhhhcc
Confidence 356889999999999998887 234457877774 67765554
No 131
>PRK10908 cell division protein FtsE; Provisional
Probab=99.27 E-value=1.2e-11 Score=135.95 Aligned_cols=125 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .|+ +.+++.++........ ..+ ...++|+||++.+++.++..+++.+.
T Consensus 39 sGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~-----~~~-----~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 108 (222)
T PRK10908 39 AGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREV-----PFL-----RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG 108 (222)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHH-----HHH-----HhheEEEecCccccccccHHHHHHhHHHhcC
Confidence 356777777666 222 5566655543322111 011 12589999999988888877765221
Q ss_pred -----------HH--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 -----------RI--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 -----------~l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||++||+.+. ....+.
T Consensus 109 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 188 (222)
T PRK10908 109 ASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188 (222)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCC
Confidence 00 68999999999999999999999999999886 234578
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|++|||.+++..+| |+++.|++|
T Consensus 189 tiii~sH~~~~~~~~~----d~i~~l~~G 213 (222)
T PRK10908 189 TVLMATHDIGLISRRS----YRMLTLSDG 213 (222)
T ss_pred EEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999876
No 132
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.27 E-value=1.2e-11 Score=135.36 Aligned_cols=89 Identities=19% Similarity=0.347 Sum_probs=76.3
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH--------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV--------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~--------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.++|+||++.+++.++..+++.+. .+ ++||++||+||+.+|++
T Consensus 77 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 156 (213)
T cd03262 77 KVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV 156 (213)
T ss_pred cceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE
Confidence 599999999999888887765210 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||||||+|||+.+. ....|.|+|++|||.+++..+| |++++|++|
T Consensus 157 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~----d~i~~l~~g 211 (213)
T cd03262 157 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA----DRVIFMDDG 211 (213)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 999999999999987 2335789999999999999999 999999876
No 133
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.27 E-value=1.1e-11 Score=142.04 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||=++++++ .| .+.+++..+..... .+ ...+||+||++.|++++++.+++.+ ..
T Consensus 39 aGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~-~~-------------~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~ 104 (301)
T TIGR03522 39 AGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPK-EV-------------QRNIGYLPEHNPLYLDMYVREYLQFIAGIYG 104 (301)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEcccChH-HH-------------HhceEEecCCCCCCCCCcHHHHHHHHHHHcC
Confidence 456777777766 22 25566655433211 00 1259999999999999999888632 10
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCce
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQ 1282 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~ 1282 (1491)
. |+||++||+||+.+|++|+|||||+|||+.++ ....+.|
T Consensus 105 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~t 184 (301)
T TIGR03522 105 MKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKT 184 (301)
T ss_pred CCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 0 68999999999999999999999999999988 1223789
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||++||+++++..+| |+++.|++|
T Consensus 185 iii~sH~l~~~~~~~----d~i~~l~~G 208 (301)
T TIGR03522 185 IILSTHIMQEVEAIC----DRVIIINKG 208 (301)
T ss_pred EEEEcCCHHHHHHhC----CEEEEEECC
Confidence 999999999999999 999999887
No 134
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.27 E-value=1e-11 Score=145.07 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=94.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.++...+....... . .......++|+||++.+++++++.+|+.+.
T Consensus 35 sGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~------~---~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 105 (352)
T PRK11144 35 AGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI------C---LPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSM 105 (352)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEEcccccccc------c---cchhhCCEEEEcCCcccCCCCcHHHHHHhhhhhhh
Confidence 467777877776 332 556665543321100 0 000123699999999999999999886321
Q ss_pred --HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEE
Q psy9513 1242 --RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVI 1286 (1491)
Q Consensus 1242 --~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~ 1286 (1491)
++ ++||++|||||+.+|++|+|||||+|||+.+. ... .|.|+|+|
T Consensus 106 ~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~v 185 (352)
T PRK11144 106 VAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYV 185 (352)
T ss_pred HHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 00 68999999999999999999999999999987 222 37899999
Q ss_pred ccCHHHHHHHhccccceEEEEecC
Q psy9513 1287 THDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1287 thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||.+++..+| |++++|.+|
T Consensus 186 THd~~~~~~~~----d~i~~l~~G 205 (352)
T PRK11144 186 SHSLDEILRLA----DRVVVLEQG 205 (352)
T ss_pred ecCHHHHHHhC----CEEEEEeCC
Confidence 99999999999 999999877
No 135
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.27 E-value=7.8e-12 Score=129.71 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=74.7
Q ss_pred ceEEEEccchhhhhhhhhHHHHhH---HHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEE
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYV---VRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLI 1284 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~---~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i 1284 (1491)
.+++|+||++.++ .++..+++.+ ..+ ++||++||+||+.+|++++|||||++||+.+. ....+.|+|
T Consensus 64 ~~i~~~~q~~~~~-~~tv~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tii 142 (166)
T cd03223 64 EDLLFLPQRPYLP-LGTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVI 142 (166)
T ss_pred ceEEEECCCCccc-cccHHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEE
Confidence 4799999999875 5799998743 222 89999999999999999999999999999988 233378999
Q ss_pred EEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1285 VITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1285 ~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
++|||.+++ .+| |+++.++++|
T Consensus 143 ivsh~~~~~-~~~----d~i~~l~~~~ 164 (166)
T cd03223 143 SVGHRPSLW-KFH----DRVLDLDGEG 164 (166)
T ss_pred EEeCChhHH-hhC----CEEEEEcCCC
Confidence 999999875 578 9999997764
No 136
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.26 E-value=2.2e-12 Score=138.24 Aligned_cols=92 Identities=45% Similarity=0.689 Sum_probs=71.1
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
+..|+++||++|. ...+++|+.++++|+||||||||||++||.|+++|..+|.+ |.+. ++..+
T Consensus 1 ~~~l~l~nfr~~~--~~~~l~~~~g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~--~~~~-~~~~~------------ 63 (204)
T cd03240 1 IDKLSIRNIRSFH--ERSEIEFFSPLTLIVGQNGAGKTTIIEALKYALTGELPPNS--KGGA-HDPKL------------ 63 (204)
T ss_pred CcEEEEECccccc--CceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCccc--cccc-chHHH------------
Confidence 3579999999984 45789999999999999999999999999999999999876 5543 22222
Q ss_pred cccccCCCCCCccHHHHHHhhccccCCCceEEEEeEE
Q psy9513 84 NFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLL 120 (1491)
Q Consensus 84 ~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~ 120 (1491)
.......+.|.+.|++..+..|++.|.+.
T Consensus 64 --------i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 64 --------IREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred --------HhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 12234457788888866577788888653
No 137
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.26 E-value=1.1e-11 Score=137.97 Aligned_cols=89 Identities=22% Similarity=0.297 Sum_probs=77.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------RI-----------------------VRDHKALAETFSRNCGIFALDEPT 1267 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~ 1267 (1491)
.++|+||++.+++.+++.+++.+. .+ ++||++||+||+.+|++|||||||
T Consensus 82 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 82 DTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred ceEEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 589999999999988888876321 00 689999999999999999999999
Q ss_pred CCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1268 TNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1268 ~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||+.+. . ...+.|||+||||.+++..+| |+++.|.+|
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~----d~i~~l~~G 210 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMA----DRVLLIEEG 210 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999988 1 234789999999999999999 999999876
No 138
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.1e-11 Score=129.56 Aligned_cols=119 Identities=18% Similarity=0.183 Sum_probs=89.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhh
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1246 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~ 1246 (1491)
..+||=++++++ +| .+.++..++........ ...++|+||++.+++ .+..+++ +..-++|
T Consensus 39 sGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~~~~~~~~-~t~~e~l-LS~G~~~ 103 (171)
T cd03228 39 SGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-------------RKNIAYVPQDPFLFS-GTIRENI-LSGGQRQ 103 (171)
T ss_pred CCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-------------HhhEEEEcCCchhcc-chHHHHh-hCHHHHH
Confidence 356777777766 22 24555554433211110 125999999998876 5888887 4455899
Q ss_pred HHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1247 HKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1247 ~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++||+||+.+|++|+|||||+|||+.+. ....+.++|++|||.+++.. | |+++.|.+|
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~----d~~~~l~~g 170 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-A----DRIIVLDDG 170 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-C----CEEEEEcCC
Confidence 99999999999999999999999999887 12246899999999999987 8 999999765
No 139
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.1e-11 Score=135.28 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=77.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H------------HH-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V------------RI-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~------------~l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.++++++..+++.+ . .+ ++||++||+||+.+|+++
T Consensus 71 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~ll 150 (211)
T cd03298 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVL 150 (211)
T ss_pred cEEEEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 59999999999999998887521 0 00 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. .. ..+.|+|++|||.+++..+| |+++.|.+|
T Consensus 151 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~G 205 (211)
T cd03298 151 LLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA----QRVVFLDNG 205 (211)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhh----CEEEEEECC
Confidence 99999999999988 22 24889999999999999999 999999877
No 140
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.3e-11 Score=136.93 Aligned_cols=125 Identities=14% Similarity=0.245 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+..+.......+ ... ...++|+||++.+++.++..+++.+.
T Consensus 42 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~~~------~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 111 (233)
T cd03258 42 AGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKEL----RKA------RRRIGMIFQHFNLLSSRTVFENVALPLEIAG 111 (233)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHH----HHH------HhheEEEccCcccCCCCcHHHHHHHHHHHcC
Confidence 356777777766 22 25666665543321111 000 12589999999999999988875220
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ... .|
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~ 191 (233)
T cd03258 112 VPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG 191 (233)
T ss_pred CCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 00 68999999999999999999999999999988 223 38
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||.+++..+| |++++|.+|
T Consensus 192 ~tvii~sH~~~~~~~~~----d~i~~l~~G 217 (233)
T cd03258 192 LTIVLITHEMEVVKRIC----DRVAVMEKG 217 (233)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999877
No 141
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.26 E-value=1.4e-11 Score=142.06 Aligned_cols=126 Identities=14% Similarity=0.137 Sum_probs=94.9
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHHhH---
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRAYV--- 1240 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~~~--- 1240 (1491)
+..+||=++++++ .| .+.+|+..+..+....+ +.+| ..++||||++ .|++.++..+++.+
T Consensus 57 GsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~-----~~~r-----~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~ 126 (331)
T PRK15079 57 GCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEW-----RAVR-----SDIQMIFQDPLASLNPRMTIGEIIAEPLR 126 (331)
T ss_pred CCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHH-----HHHh-----CceEEEecCchhhcCCCCCHHHHHHHHHH
Confidence 3457777777666 22 26777777766544222 1111 2599999998 57777777666411
Q ss_pred -H--------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------
Q psy9513 1241 -V--------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------- 1275 (1491)
Q Consensus 1241 -~--------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------- 1275 (1491)
+ .+ |+||++||+||+.+|++||+||||+|||+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~ 206 (331)
T PRK15079 127 TYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ 206 (331)
T ss_pred HhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 0 00 78999999999999999999999999999987
Q ss_pred Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
... .|.|+|+||||++++..+| |++++|..|
T Consensus 207 l~~~~~~til~iTHdl~~~~~~~----dri~vl~~G 238 (331)
T PRK15079 207 LQREMGLSLIFIAHDLAVVKHIS----DRVLVMYLG 238 (331)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 223 4899999999999999999 999999877
No 142
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.4e-11 Score=139.01 Aligned_cols=126 Identities=14% Similarity=0.190 Sum_probs=94.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+..+.......+ +. ....+++|+||++.+++.+++.+++.+.
T Consensus 61 sGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~-----~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 131 (269)
T cd03294 61 SGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKEL-----RE----LRRKKISMVFQSFALLPHRTVLENVAFGLEVQG 131 (269)
T ss_pred CCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhh-----hh----hhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC
Confidence 456777777776 33 25677766554332111 00 0123699999999999988888875321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~ 1280 (1491)
.+ ++||++||+||+.+|++|||||||+|||+.+. .. ..|
T Consensus 132 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g 211 (269)
T cd03294 132 VPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ 211 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999987 22 237
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||++++..+| |+++.|.+|
T Consensus 212 ~tiii~tH~~~~~~~~~----d~v~~l~~G 237 (269)
T cd03294 212 KTIVFITHDLDEALRLG----DRIAIMKDG 237 (269)
T ss_pred CEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 89999999999999999 999999876
No 143
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.26 E-value=6.7e-12 Score=127.95 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=80.8
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+|.|+ |+||.+.+ .+|+|.++ +++++|||||||||++++| .|.++|.+ |.|.++|..+ .....
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmI----Lglle~~~--G~I~~~g~~~----~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMI----LGLLEPTE--GEITWNGGPL----SQEIK 71 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHH----hccCCccC--ceEEEcCcch----hhhhh
Confidence 3889999 79998888 99999987 9999999999999999999 89999999 9999999888 55667
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.++||. .+.++.+..++...+.+-.
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla 97 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLA 97 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHH
Confidence 789999 8888999999999888743
No 144
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=1.5e-11 Score=134.36 Aligned_cols=89 Identities=20% Similarity=0.289 Sum_probs=76.2
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H----------HH-----------------------hhhHHHHHHHhhcCCCeeEE
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V----------RI-----------------------VRDHKALAETFSRNCGIFAL 1263 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~----------~l-----------------------~~~~~~~a~~~~~~~~~l~l 1263 (1491)
.++|+||++.++++++..+++.+ . .. ++||++||+||+.+|++|+|
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 58999999999988888776521 0 00 68999999999999999999
Q ss_pred cCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1264 DEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1264 DEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||||+|||+.+. .... |.|+|++|||.+++..+| |+++.|.+|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 208 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLA----DRIVVMEDG 208 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhc----CEEEEEECC
Confidence 999999999988 2233 789999999999999999 999999877
No 145
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.26 E-value=1.6e-11 Score=136.60 Aligned_cols=123 Identities=13% Similarity=0.249 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+.+...... ....++|+||++.+++++++.+++.+.
T Consensus 37 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~------------~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~ 104 (236)
T cd03219 37 AGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI------------ARLGIGRTFQIPRLFPELTVLENVMVAAQART 104 (236)
T ss_pred CCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHH------------HhcCEEEEecccccccCCCHHHHHHHHHhhcc
Confidence 457777777776 22 25566655543222110 123589999999999998888764210
Q ss_pred ------------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-----
Q psy9513 1242 ------------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----- 1275 (1491)
Q Consensus 1242 ------------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----- 1275 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 184 (236)
T cd03219 105 GSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184 (236)
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 01 68999999999999999999999999999987
Q ss_pred ----HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ----SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ----~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|+|+||||.+++..+| |+++.|.+|
T Consensus 185 ~l~~~~~~~~tii~vsH~~~~~~~~~----d~i~~l~~G 219 (236)
T cd03219 185 LIRELRERGITVLLVEHDMDVVMSLA----DRVTVLDQG 219 (236)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhC----CEEEEEeCC
Confidence 2336889999999999999999 999999877
No 146
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.26 E-value=1.8e-11 Score=133.79 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=76.9
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-H------------H-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-R------------I-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-~------------l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
..++|+||++.+++.++..+++.++ . + ++||++||+||+.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 151 (213)
T cd03301 72 RDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV 151 (213)
T ss_pred ceEEEEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 3699999999999888888775221 0 0 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||+|||+.+. ... .|.|+|++|||.+++..+| |+++.+.+|
T Consensus 152 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~----d~i~~l~~g 207 (213)
T cd03301 152 FLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMA----DRIAVMNDG 207 (213)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc----CeEEEEECC
Confidence 999999999999988 222 4889999999999999999 999999776
No 147
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.26 E-value=3.2e-12 Score=125.71 Aligned_cols=92 Identities=15% Similarity=0.325 Sum_probs=80.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
+.++|+ ++|+...+ .++++++| +|+|+||||||||||+.++ ..+.++++ |.+.++|..+...+....+.
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~----sRL~~~d~--G~i~i~g~~~~~~~s~~LAk 75 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM----SRLLKKDS--GEITIDGLELTSTPSKELAK 75 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHH----HHhccccC--ceEEEeeeecccCChHHHHH
Confidence 568899 79998777 88888776 9999999999999999999 88889998 99999999997777777777
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++.. |..++..+.+|+.-|.|.
T Consensus 76 ~lSILkQ~N~i~~rlTV~dLv~FG 99 (252)
T COG4604 76 KLSILKQENHINSRLTVRDLVGFG 99 (252)
T ss_pred HHHHHHhhchhhheeEHHHHhhcC
Confidence 88888 998888889999888774
No 148
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.25 E-value=1.3e-11 Score=132.78 Aligned_cols=89 Identities=17% Similarity=0.238 Sum_probs=77.8
Q ss_pred eEEEEccchhhhhhhhhHHHH-hH-HHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceE
Q psy9513 1218 QLIVITHDEEFIENLTAIDRA-YV-VRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQL 1283 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~-~~-~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~ 1283 (1491)
.++|+||++.++++++..++. .+ ..+ ++||++||+||+.+|++++|||||++||+.+. ....+.|+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~ti 157 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSV 157 (200)
T ss_pred cEEEeecChhhccCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEE
Confidence 599999999999999988875 22 234 89999999999999999999999999999987 22347899
Q ss_pred EEEccCHHHHHH-HhccccceEEEEecC
Q psy9513 1284 IVITHDEEFIEN-LTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1284 i~~thd~~~~~~-~~~~~~~~~~~l~~~ 1310 (1491)
|++||+++++.. +| |+++.|..|
T Consensus 158 ii~sh~~~~~~~~~~----d~i~~l~~G 181 (200)
T cd03217 158 LIITHYQRLLDYIKP----DRVHVLYDG 181 (200)
T ss_pred EEEecCHHHHHHhhC----CEEEEEECC
Confidence 999999999988 79 999999876
No 149
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.2e-12 Score=133.85 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=80.8
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-HHHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-EASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~ 80 (1491)
|.+.++ +.|+.... .+|+|+++ ++++.|||||||||||++| .|...|.. |.|+++|..+.... .....
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiI----AGLe~p~~--G~I~~~~~~l~D~~~~~~~~ 76 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRII----AGLETPDA--GRIRLNGRVLFDVSNLAVRD 76 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHH----hCcCCCCC--ceEEECCEeccchhccchhh
Confidence 778888 58887777 78888886 9999999999999999999 99999998 99999998442211 23456
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
+++||+ |+..+++.++|..+|.|.+..
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~ 104 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKV 104 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccc
Confidence 789999 999999999999999998863
No 150
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.25 E-value=1.6e-11 Score=135.34 Aligned_cols=123 Identities=14% Similarity=0.181 Sum_probs=92.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+.++........ + ...++|+||++.++++++..+++.+.
T Consensus 37 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~--------~----~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 37 AGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER--------A----RAGIGYVPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHH--------H----hcCeEEeccccccCCCCcHHHHHHHHhhhcC
Confidence 456777777766 22 25666665543322111 0 12589999999999988887765210
Q ss_pred ----------------HH--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCce
Q psy9513 1242 ----------------RI--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQ 1282 (1491)
Q Consensus 1242 ----------------~l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~ 1282 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.|
T Consensus 105 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~t 184 (222)
T cd03224 105 RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVT 184 (222)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCE
Confidence 00 68999999999999999999999999999988 2335789
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|||.+++..+| |+++.|..|
T Consensus 185 iii~sH~~~~~~~~~----d~i~~l~~G 208 (222)
T cd03224 185 ILLVEQNARFALEIA----DRAYVLERG 208 (222)
T ss_pred EEEEeCCHHHHHHhc----cEEEEeeCC
Confidence 999999999999999 999999876
No 151
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.25 E-value=1.5e-11 Score=144.00 Aligned_cols=126 Identities=12% Similarity=0.178 Sum_probs=94.3
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.+|+..+.......- +. .....++|+||++.+++++++.+|+.+.
T Consensus 34 sGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~----~~-----~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 104 (354)
T TIGR02142 34 SGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIF----LP-----PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR 104 (354)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECccCccccc----cc-----hhhCCeEEEecCCccCCCCcHHHHHHHHhhccC
Confidence 457777777776 332 5566655533211000 00 0123699999999999999999886321
Q ss_pred --H----H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCce
Q psy9513 1242 --R----I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQ 1282 (1491)
Q Consensus 1242 --~----l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~ 1282 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ... .|.|
T Consensus 105 ~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~t 184 (354)
T TIGR02142 105 PSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP 184 (354)
T ss_pred hhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCE
Confidence 0 1 68999999999999999999999999999987 223 3789
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|+||||.+++..+| |++++|.+|
T Consensus 185 iiivtH~~~~~~~~~----d~i~~l~~G 208 (354)
T TIGR02142 185 ILYVSHSLQEVLRLA----DRVVVLEDG 208 (354)
T ss_pred EEEEecCHHHHHHhC----CEEEEEeCC
Confidence 999999999999999 999999887
No 152
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.25 E-value=1.7e-11 Score=130.91 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=77.1
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH----HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV----RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~----~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.++|++|++.+++.++..+++.+. .+ ++||++||+||+.+|++|+|||||++||+.+. ....|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 159 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQ 159 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCC
Confidence 589999999999999999997442 23 79999999999999999999999999999988 233588
Q ss_pred eEEEEccCHH-HHHHHhccccceEEEEec
Q psy9513 1282 QLIVITHDEE-FIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1282 ~~i~~thd~~-~~~~~~~~~~~~~~~l~~ 1309 (1491)
|+|+||||.+ .+..+| |+++.|.+
T Consensus 160 tiiivtH~~~~~~~~~~----d~i~~l~~ 184 (192)
T cd03232 160 AILCTIHQPSASIFEKF----DRLLLLKR 184 (192)
T ss_pred EEEEEEcCChHHHHhhC----CEEEEEcC
Confidence 9999999998 477888 99999976
No 153
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.25 E-value=1.8e-11 Score=137.38 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=76.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH--------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV--------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~--------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.++|+||++.+++.+++.+++.+. .+ ++||++||+||+.+|++
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~l 165 (250)
T PRK11264 86 HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEV 165 (250)
T ss_pred hEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCE
Confidence 589999999999888888775210 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||+|||+.+. ....|.++|++|||.+++..+| |++++|.+|
T Consensus 166 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~----d~i~~l~~G 220 (250)
T PRK11264 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVA----DRAIFMDQG 220 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 999999999999988 2345889999999999999999 999999877
No 154
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.25 E-value=1.9e-11 Score=137.60 Aligned_cols=89 Identities=17% Similarity=0.332 Sum_probs=77.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H-------------HH------------------------hhhHHHHHHHhhcCCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V-------------RI------------------------VRDHKALAETFSRNCG 1259 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~-------------~l------------------------~~~~~~~a~~~~~~~~ 1259 (1491)
.++|+||++.+++.+++.+++.+ . ++ ++||++||+||+.+|+
T Consensus 93 ~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 172 (257)
T PRK10619 93 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172 (257)
T ss_pred ceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 69999999999999998888621 1 00 5799999999999999
Q ss_pred eeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1260 IFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1260 ~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|+|||||+|||+.+. ....|.|+|+||||.+++..+| |+++.|.+|
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~----d~i~~l~~G 228 (257)
T PRK10619 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS----SHVIFLHQG 228 (257)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 9999999999999988 2345899999999999999999 999999877
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=1.7e-11 Score=136.37 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=76.2
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-----------------HH-----------------------hhhHHHHHHHhhc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-----------------RI-----------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-----------------~l-----------------------~~~~~~~a~~~~~ 1256 (1491)
.+++|+||++.+++.+++.+++.+. .+ ++||++||+||+.
T Consensus 74 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~ 153 (239)
T cd03296 74 RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAV 153 (239)
T ss_pred cceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 3699999999998888877764210 00 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||+|||+.+. ... .|.|||++|||.+++..+| |+++.|.+|
T Consensus 154 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~----d~i~~l~~G 213 (239)
T cd03296 154 EPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVA----DRVVVMNKG 213 (239)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999988 223 3789999999999999999 999999877
No 156
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=1e-11 Score=124.23 Aligned_cols=104 Identities=15% Similarity=0.301 Sum_probs=78.7
Q ss_pred cccceeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC--c
Q psy9513 3 LLDQLHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK--D 75 (1491)
Q Consensus 3 ~~~~l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~--~ 75 (1491)
....+.++|+. .||.+.+ .+|+++++ +|+|+||+||||||+|+++--.- ...|.....|.|.++|..+..+ +
T Consensus 4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCC
Confidence 33468899995 8887777 99999988 99999999999999999992111 2334333348999999888553 4
Q ss_pred HHHhhcCcccc-ccCCCCCCccHHHHHHhhcccc
Q psy9513 76 EASASSGKNFV-HDPRIGKKDETHAIVKLQCTCE 108 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~ 108 (1491)
....++.+|++ |.|+.++ .+++.+|.+...-+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~ 115 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH 115 (253)
T ss_pred HHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh
Confidence 45677788888 8877766 78888888877643
No 157
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.24 E-value=2.3e-11 Score=140.19 Aligned_cols=125 Identities=13% Similarity=0.159 Sum_probs=91.3
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHHh-H---
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRAY-V--- 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~~-~--- 1240 (1491)
..+||=+++++. . +.+.+++..+..+....+ +.+| ..++||||++ .|.+.++..+++. +
T Consensus 52 sGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~-----~~~r-----~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~ 121 (327)
T PRK11308 52 CGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQ-----KLLR-----QKIQIVFQNPYGSLNPRKKVGQILEEPLLI 121 (327)
T ss_pred CcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHH-----HHHh-----CCEEEEEcCchhhcCCccCHHHHHHHHHHH
Confidence 456676666666 2 226677776655543222 1112 2599999998 4666555544321 0
Q ss_pred H-------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1241 V-------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1241 ~-------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
+ .+ |+||++||+||+.+|++||+||||++||+.+. ..
T Consensus 122 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~ 201 (327)
T PRK11308 122 NTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQ 201 (327)
T ss_pred ccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHH
Confidence 0 00 79999999999999999999999999999987 22
Q ss_pred -hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 -QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 -~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|+|+||||+.++..+| |++++|..|
T Consensus 202 ~~~g~til~iTHdl~~~~~~a----drv~vm~~G 231 (327)
T PRK11308 202 QELGLSYVFISHDLSVVEHIA----DEVMVMYLG 231 (327)
T ss_pred HHcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 34899999999999999999 999999887
No 158
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.23 E-value=2.4e-11 Score=135.41 Aligned_cols=124 Identities=16% Similarity=0.227 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+.++........ . ....++|+||++.+++.+++.+++.+.
T Consensus 38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~------~-----~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 106 (240)
T PRK09493 38 SGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDER------L-----IRQEAGMVFQQFYLFPHLTALENVMFGPLRVR 106 (240)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHH------H-----HhhceEEEecccccCCCCcHHHHHHhHHHHhc
Confidence 356777777776 22 26667665543211000 0 012589999999999888887775221
Q ss_pred ------------HH--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 ------------RI--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 ------------~l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~ 186 (240)
T PRK09493 107 GASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 00 68999999999999999999999999999988 23458
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||.+++..+| |+++.|.+|
T Consensus 187 ~tiii~sH~~~~~~~~~----d~i~~l~~G 212 (240)
T PRK09493 187 MTMVIVTHEIGFAEKVA----SRLIFIDKG 212 (240)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999877
No 159
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.23 E-value=1e-11 Score=132.18 Aligned_cols=91 Identities=14% Similarity=0.260 Sum_probs=72.3
Q ss_pred ceeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+. +|++..+ .+|+|+++ +++|+||||||||||+++| .|.++|.+ |.|.+.|..... ....
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~i----LGll~p~~--G~i~~~g~~~~~---~~~~ 74 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAI----LGLLKPSS--GEIKIFGKPVRK---RRKR 74 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCcCCc--ceEEEccccccc---cccC
Confidence 48899994 8885456 99999886 9999999999999999999 99999998 999998876521 1123
Q ss_pred cCcccc-ccCCC--CCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRI--GKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~--~~~~~~~~~v~~~~ 105 (1491)
..++|+ |...+ ..+.+|...|.+.-
T Consensus 75 ~~IgYVPQ~~~~d~~fP~tV~d~V~~g~ 102 (254)
T COG1121 75 LRIGYVPQKSSVDRSFPITVKDVVLLGR 102 (254)
T ss_pred CeEEEcCcccccCCCCCcCHHHHHHccC
Confidence 568999 86543 45678888888753
No 160
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.23 E-value=2.4e-11 Score=133.75 Aligned_cols=125 Identities=19% Similarity=0.235 Sum_probs=90.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+.+...... +.+| ...++|+||++.+++.++..+++.+.
T Consensus 42 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-----~~~~----~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 112 (221)
T TIGR02211 42 SGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER-----AKLR----NKKLGFIYQFHHLLPDFTALENVAMPLLIGK 112 (221)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHH-----HHHH----HhcEEEEecccccCCCCcHHHHHHHHHHhcC
Confidence 356777776666 22 25566655544322111 0011 13589999999999888887775220
Q ss_pred -----------HH--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 -----------RI--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 -----------~l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ... .+
T Consensus 113 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~ 192 (221)
T TIGR02211 113 KSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN 192 (221)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999987 222 47
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+||||.+++.. + |+++.|.+|
T Consensus 193 ~tii~~tH~~~~~~~-~----d~v~~l~~G 217 (221)
T TIGR02211 193 TSFLVVTHDLELAKK-L----DRVLEMKDG 217 (221)
T ss_pred CEEEEEeCCHHHHhh-c----CEEEEEeCC
Confidence 899999999998864 7 999999876
No 161
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.23 E-value=2.7e-11 Score=137.09 Aligned_cols=122 Identities=15% Similarity=0.182 Sum_probs=91.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ +| ++.+|+..+.+.....+ ...+||+||++. ++..+++.+++.+.
T Consensus 42 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-------------~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~ 108 (274)
T PRK13647 42 AGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWV-------------RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM 108 (274)
T ss_pred CcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH-------------HhhEEEEecChhhhhccCcHHHHHHhhHHHc
Confidence 456777777776 32 36677766644322111 235999999973 44556777665321
Q ss_pred -----H----H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 -----R----I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 -----~----l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ....|
T Consensus 109 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g 188 (274)
T PRK13647 109 GLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 0 0 68999999999999999999999999999988 23348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||++|||++++..+| |++++|++|
T Consensus 189 ~tili~tH~~~~~~~~~----d~i~~l~~G 214 (274)
T PRK13647 189 KTVIVATHDVDLAAEWA----DQVIVLKEG 214 (274)
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999887
No 162
>PRK01156 chromosome segregation protein; Provisional
Probab=99.23 E-value=6.4e-05 Score=100.89 Aligned_cols=78 Identities=23% Similarity=0.451 Sum_probs=64.0
Q ss_pred cchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHh
Q psy9513 1195 CSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKN 1274 (1491)
Q Consensus 1195 ~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~ 1274 (1491)
+|+|+....++++|+ |+|++|+.+|++++|||||+|||+.+
T Consensus 802 lS~G~~~~~~la~rl---------------------------------------ala~~l~~~~~~lilDEpt~~lD~~~ 842 (895)
T PRK01156 802 LSGGEKTAVAFALRV---------------------------------------AVAQFLNNDKSLLIMDEPTAFLDEDR 842 (895)
T ss_pred CCHhHHHHHHHHHHH---------------------------------------HHHHHhccCCCeEEEeCCCCcCCHHH
Confidence 777877877999999 99999999999999999999999998
Q ss_pred H------H----hhc-C-ceEEEEccCHHHHHHHhccccceEEEEecCCCcceee
Q psy9513 1275 A------S----DQK-N-FQLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDI 1317 (1491)
Q Consensus 1275 ~------~----~~~-~-~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i 1317 (1491)
. . ... | +|+|+||||.+++ .+| |+++.+... +|.|.+
T Consensus 843 ~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~~----d~ii~~~~~-~~~s~v 891 (895)
T PRK01156 843 RTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SVA----DVAYEVKKS-SGSSKV 891 (895)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hhc----CeEEEEEec-CCeeEE
Confidence 6 1 122 3 5899999999987 478 999999854 344444
No 163
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.23 E-value=1.9e-11 Score=143.40 Aligned_cols=122 Identities=15% Similarity=0.181 Sum_probs=94.4
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH----H-
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV----V- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~----~- 1241 (1491)
..+||=++++++ +| .+.+++..+..+....+ ..++||+||++.++..+++.+++.+ +
T Consensus 40 aGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~-------------~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~ 106 (402)
T PRK09536 40 AGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAA-------------SRRVASVPQDTSLSFEFDVRQVVEMGRTPHR 106 (402)
T ss_pred chHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHH-------------hcceEEEccCCCCCCCCCHHHHHHhccchhc
Confidence 356777776666 33 36777766654332121 2359999999999888888876521 1
Q ss_pred ------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 ------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
.+ ++||++|||||+++|++|+|||||+|||+.+. ..
T Consensus 107 ~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~ 186 (402)
T PRK09536 107 SRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186 (402)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999887 33
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|||++|||++++..+| |+++.|++|
T Consensus 187 ~~g~TIIivsHdl~~~~~~a----drii~l~~G 215 (402)
T PRK09536 187 DDGKTAVAAIHDLDLAARYC----DELVLLADG 215 (402)
T ss_pred hcCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 45889999999999999999 999999887
No 164
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.23 E-value=2.1e-11 Score=136.37 Aligned_cols=125 Identities=17% Similarity=0.255 Sum_probs=92.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+.++.......+ .. ....++|+||++.+++.+++.+++.+.
T Consensus 39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-----~~-----~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (243)
T TIGR02315 39 AGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKL-----RK-----LRRRIGMIFQHYNLIERLTVLENVLHGRLGYK 108 (243)
T ss_pred CCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHH-----HH-----HHhheEEEcCCCcccccccHHHHHhhcccccc
Confidence 356777777776 22 25666655543221111 00 012599999999999888877765210
Q ss_pred ----------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------
Q psy9513 1242 ----------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------- 1275 (1491)
Q Consensus 1242 ----------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------- 1275 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 188 (243)
T TIGR02315 109 PTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188 (243)
T ss_pred cchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00 68999999999999999999999999999987
Q ss_pred --Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 --SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 --~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
... .|.|+|+||||.+++..+| |+++.|.+|
T Consensus 189 ~~~~~~~~~tiii~tH~~~~~~~~~----d~v~~l~~G 222 (243)
T TIGR02315 189 KRINKEDGITVIINLHQVDLAKKYA----DRIVGLKAG 222 (243)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhc----CeEEEEECC
Confidence 222 3789999999999999999 999999877
No 165
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.23 E-value=1.2e-12 Score=168.06 Aligned_cols=48 Identities=15% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy9513 595 NFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQ 642 (1491)
Q Consensus 595 ~~~~aie~~L~~~~~~i~~~~~~i~~lk~~~~r~~~~l~~~~~~l~~~ 642 (1491)
.+...+...|..+...+......+..+++...+++..+..+...++..
T Consensus 321 eaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~ 368 (859)
T PF01576_consen 321 EAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA 368 (859)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666555544443
No 166
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.23 E-value=2.5e-11 Score=135.67 Aligned_cols=125 Identities=17% Similarity=0.245 Sum_probs=92.4
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH------
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV------ 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~------ 1240 (1491)
..+||=++++++ .| .+.+|+..+........ -.. ...++|+||++.+++.+++.+++.+
T Consensus 38 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~----~~~------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 107 (241)
T cd03256 38 AGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKAL----RQL------RRQIGMIFQQFNLIERLSVLENVLSGRLGRR 107 (241)
T ss_pred CCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHH----HHH------HhccEEEcccCcccccCcHHHHHHhhhcccc
Confidence 456777777766 22 25566655543321000 000 1258999999999888888776521
Q ss_pred -----------H----HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------
Q psy9513 1241 -----------V----RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------- 1275 (1491)
Q Consensus 1241 -----------~----~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------- 1275 (1491)
. .+ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 187 (241)
T cd03256 108 STWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187 (241)
T ss_pred hhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHH
Confidence 0 00 68999999999999999999999999999988
Q ss_pred --Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 --SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 --~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
... .|.|||+||||++++..+| |++++|.+|
T Consensus 188 ~~~~~~~~~tii~~tH~~~~~~~~~----d~v~~l~~G 221 (241)
T cd03256 188 KRINREEGITVIVSLHQVDLAREYA----DRIVGLKDG 221 (241)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 222 4889999999999999999 999999877
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.23 E-value=1.9e-11 Score=128.99 Aligned_cols=87 Identities=25% Similarity=0.222 Sum_probs=73.9
Q ss_pred eEEEEccchhhhhhhhhHHHH--hHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRA--YVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVIT 1287 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~--~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~t 1287 (1491)
.++|+||++.+++ .+..+++ .+..-++||++||+||+.+|++|+|||||++||+.+. ....+.|+|++|
T Consensus 76 ~i~~~~q~~~~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~s 154 (178)
T cd03247 76 LISVLNQRPYLFD-TTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154 (178)
T ss_pred hEEEEccCCeeec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 5899999998886 6888876 2233389999999999999999999999999999887 112478999999
Q ss_pred cCHHHHHHHhccccceEEEEecC
Q psy9513 1288 HDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1288 hd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||.+++. .| |+++.|.+|
T Consensus 155 h~~~~~~-~~----d~~~~l~~g 172 (178)
T cd03247 155 HHLTGIE-HM----DKILFLENG 172 (178)
T ss_pred cCHHHHH-hC----CEEEEEECC
Confidence 9999986 58 999999876
No 168
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.22 E-value=0.00013 Score=99.37 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=8.2
Q ss_pred HHhHHHHHHHHHH
Q psy9513 1115 ISDLTKYHHTLEN 1127 (1491)
Q Consensus 1115 ~~dl~~~~~~l~~ 1127 (1491)
..++..|+.+|+.
T Consensus 991 ~~~i~~f~~~l~~ 1003 (1201)
T PF12128_consen 991 GNDISNFYGVLED 1003 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 3556677766665
No 169
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=2.2e-11 Score=139.97 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=58.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 181 qkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~a----dri~vl~~G 252 (320)
T PRK13631 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVA----DEVIVMDKG 252 (320)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 2345899999999999999999 999999887
No 170
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=4e-11 Score=134.05 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=75.2
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------------HH-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------------RI-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------------~l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.++|+||++.+++.+++.+++.+. ++ ++||++||+||+.+|++|
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll 150 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL 150 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 479999999998888887775321 00 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1262 ALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
||||||+|||+.+. . ...|.|||+||||++++..+| |+++.|.+
T Consensus 151 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~----d~i~~l~~ 204 (255)
T PRK11248 151 LLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMA----TELVLLSP 204 (255)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEeC
Confidence 99999999999998 2 224889999999999999999 99999975
No 171
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.22 E-value=1.1e-11 Score=121.67 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=83.5
Q ss_pred eeeecc-cccCCCC-c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC---CcHH
Q psy9513 7 LHIMGI-RNFPADK-N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK---KDEA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~~~-~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~---~~~~ 77 (1491)
|+++|+ +.|++.. + .+|+|+++ ++.|+||+||||||+|+.| ++...|.. |.+.++|.++.. ..-.
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi----~~~e~pt~--G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLI----YGEERPTR--GKILVNGHDLSRLKGREIP 75 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHH----HhhhcCCC--ceEEECCeecccccccccc
Confidence 678899 7886554 5 99999987 9999999999999999999 99999998 999999988855 2223
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhccccCC
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQCTCENN 110 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~~~ 110 (1491)
..++.+|.| |+..+....+++.+|.+.+.-.+-
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~ 109 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK 109 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCC
Confidence 567889999 999999999999999998874443
No 172
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=2.9e-11 Score=134.49 Aligned_cols=123 Identities=10% Similarity=0.105 Sum_probs=91.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+........ ....++|+||++.+++++++.+++.+.
T Consensus 42 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~------------~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 109 (237)
T PRK11614 42 AGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKI------------MREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109 (237)
T ss_pred CCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHH------------HHhCEEEeccCcccCCCCcHHHHHHHhhhccC
Confidence 346666666665 22 25566655443321100 113589999999888887777664210
Q ss_pred ----------------HH--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCce
Q psy9513 1242 ----------------RI--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQ 1282 (1491)
Q Consensus 1242 ----------------~l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~ 1282 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.|
T Consensus 110 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~t 189 (237)
T PRK11614 110 RDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMT 189 (237)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 01 68999999999999999999999999999987 2345899
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|||.+++..+| |+++.|.+|
T Consensus 190 iii~sH~~~~~~~~~----d~i~~l~~G 213 (237)
T PRK11614 190 IFLVEQNANQALKLA----DRGYVLENG 213 (237)
T ss_pred EEEEeCcHHHHHhhC----CEEEEEeCC
Confidence 999999999999999 999999877
No 173
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.22 E-value=3.1e-11 Score=131.60 Aligned_cols=120 Identities=15% Similarity=0.208 Sum_probs=91.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHh-HH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAY-VV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~-~~---- 1241 (1491)
..+||=++++++ .| .+.+|+..+.+... . ...++|+||++.++++++..+|+. +.
T Consensus 35 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---------~------~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~ 99 (213)
T TIGR01277 35 AGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP---------Y------QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL 99 (213)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEcccCCh---------h------ccceEEEeccCccCCCCcHHHHHHhHhhccC
Confidence 356666666666 22 25566655433110 0 135999999999999999888752 11
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
.+ ++||++||+||+.+|++++|||||++||+.+. ... .+
T Consensus 100 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~ 179 (213)
T TIGR01277 100 KLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQ 179 (213)
T ss_pred CccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 11 68999999999999999999999999999988 223 37
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+||||.+++..+| |+++.|.+|
T Consensus 180 ~tii~vsh~~~~~~~~~----d~v~~l~~g 205 (213)
T TIGR01277 180 RTLLMVTHHLSDARAIA----SQIAVVSQG 205 (213)
T ss_pred CEEEEEeCCHHHHHhhc----CeEEEEECC
Confidence 89999999999999999 999999876
No 174
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.22 E-value=3.2e-11 Score=133.57 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=92.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ +| .+.+|...+........ . ...++|+||++.+++.++..+++.+. .
T Consensus 37 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~------~------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~ 104 (230)
T TIGR03410 37 VGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHER------A------RAGIAYVPQGREIFPRLTVEENLLTGLAALP 104 (230)
T ss_pred CCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHH------H------HhCeEEeccCCcccCCCcHHHHHHHHHHhcC
Confidence 356777777776 22 25666655543322110 0 12589999999999988887765211 0
Q ss_pred ----------------H--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCce
Q psy9513 1243 ----------------I--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQ 1282 (1491)
Q Consensus 1243 ----------------l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~ 1282 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ... .+.|
T Consensus 105 ~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t 184 (230)
T TIGR03410 105 RRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA 184 (230)
T ss_pred cchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcE
Confidence 0 58999999999999999999999999999988 222 3789
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|+||||.+++..+| |+++++.+|
T Consensus 185 ii~~sH~~~~~~~~~----d~v~~l~~g 208 (230)
T TIGR03410 185 ILLVEQYLDFARELA----DRYYVMERG 208 (230)
T ss_pred EEEEeCCHHHHHHhC----CEEEEEECC
Confidence 999999999999999 999999877
No 175
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.22 E-value=3.5e-11 Score=132.31 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=90.5
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~--- 1242 (1491)
..+||=++++++ .|+ +.+++..+..... .+ ...++|+||++.+++.++..+++.+ ..
T Consensus 39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---------~~-----~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 104 (220)
T cd03263 39 AGKTTTLKMLTGELRPTSGTAYINGYSIRTDRK---------AA-----RQSLGYCPQFDALFDELTVREHLRFYARLKG 104 (220)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEecccchH---------HH-----hhhEEEecCcCCccccCCHHHHHHHHHHHcC
Confidence 456777777766 322 5556554432110 10 1249999999999988888777521 10
Q ss_pred ------------H--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCce
Q psy9513 1243 ------------I--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQ 1282 (1491)
Q Consensus 1243 ------------l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~ 1282 (1491)
+ ++||++||+||+.+|++|+|||||++||+.+. ....+.|
T Consensus 105 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~t 184 (220)
T cd03263 105 LPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRS 184 (220)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCE
Confidence 0 68999999999999999999999999999988 1223589
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|||++++..+| |+++.+.+|
T Consensus 185 ii~~sH~~~~~~~~~----d~i~~l~~g 208 (220)
T cd03263 185 IILTTHSMDEAEALC----DRIAIMSDG 208 (220)
T ss_pred EEEEcCCHHHHHHhc----CEEEEEECC
Confidence 999999999999999 999999877
No 176
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.22 E-value=3.3e-11 Score=134.53 Aligned_cols=89 Identities=18% Similarity=0.257 Sum_probs=76.8
Q ss_pred eEEEEccchhhhhhhhhHHHHh--HH------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAY--VV------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~--~~------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
+++|+||++.+++++++.+++. +. .+ ++||++||+||+.+|++
T Consensus 83 ~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 162 (242)
T PRK11124 83 NVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQV 162 (242)
T ss_pred heEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 5899999999999988887752 10 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||+|||+.+. ....|.|+|++|||.+++..+| |+++.|.+|
T Consensus 163 lilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~----d~i~~l~~g 217 (242)
T PRK11124 163 LLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTA----SRVVYMENG 217 (242)
T ss_pred EEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 999999999999988 2335899999999999999999 999999876
No 177
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.22 E-value=3.7e-11 Score=132.22 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=77.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV---------RI-----------------------VRDHKALAETFSRNCGIFALDE 1265 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDE 1265 (1491)
.++|+||++.+++.++..+++.++ .+ +++|++||+||+.+|++|+|||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDE 150 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDE 150 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 589999999999888888875321 00 6899999999999999999999
Q ss_pred CCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1266 PTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1266 p~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||+|||+.+. ....|.++|++|||.+++..+| |+++.|.+|
T Consensus 151 P~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~g 200 (223)
T TIGR03740 151 PTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLA----DHIGIISEG 200 (223)
T ss_pred CccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhc----CEEEEEeCC
Confidence 9999999987 2345789999999999999999 999999877
No 178
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.21 E-value=3.4e-11 Score=136.08 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=93.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH----H-
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV----V- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~----~- 1241 (1491)
..+||=++++++ .| .+.+|..++........ ... ...++|+||++.++++++..+++.+ .
T Consensus 44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~-----~~~-----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~ 113 (269)
T PRK11831 44 IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRL-----YTV-----RKRMSMLFQSGALFTDMNVFDNVAYPLREHT 113 (269)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEEccccChhhH-----HHH-----hhcEEEEecccccCCCCCHHHHHHHHHHHcc
Confidence 457777777776 33 25666665544322111 000 1258999999999998888877521 0
Q ss_pred ---------H----H-------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1242 ---------R----I-------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1242 ---------~----l-------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ... .
T Consensus 114 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 193 (269)
T PRK11831 114 QLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL 193 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 0 0 68999999999999999999999999999988 223 3
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++..+| |+++.|.+|
T Consensus 194 g~tiiivsH~~~~~~~~~----d~v~~l~~G 220 (269)
T PRK11831 194 GVTCVVVSHDVPEVLSIA----DHAYIVADK 220 (269)
T ss_pred CcEEEEEecCHHHHHHhh----CEEEEEECC
Confidence 789999999999999999 999999876
No 179
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.5e-11 Score=137.04 Aligned_cols=63 Identities=24% Similarity=0.339 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||++|+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 149 qkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~----dri~~l~~G 220 (288)
T PRK13643 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYA----DYVYLLEKG 220 (288)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 2345899999999999999999 999999887
No 180
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.21 E-value=2.6e-11 Score=142.10 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=59.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||+||||||+.+|++|++||||++||+... ....|+|+||||||+.++..+| |++++|..|
T Consensus 434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~----drv~vm~~G 506 (539)
T COG1123 434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA----DRVAVMYDG 506 (539)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC----ceEEEEECC
Confidence 69999999999999999999999999999887 3455999999999999999999 999999988
No 181
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=3.8e-11 Score=136.72 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=89.7
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhh-hhhhhhHHHHhHHH---
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEF-IENLTAIDRAYVVR--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~-~~~L~~~~~~~~~~--- 1242 (1491)
..+||=++++++ . +++.+|+..+.+...... .+ -.++||+||++.+ +..+++.+++.++.
T Consensus 44 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~------~~-----~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~ 112 (287)
T PRK13637 44 SGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLS------DI-----RKKVGLVFQYPEYQLFEETIEKDIAFGPINL 112 (287)
T ss_pred CcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHH------HH-----hhceEEEecCchhccccccHHHHHHhHHHHC
Confidence 456777777766 2 236677776654321000 00 1368999999742 23456666542210
Q ss_pred ------------------------H-----------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh
Q psy9513 1243 ------------------------I-----------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ 1278 (1491)
Q Consensus 1243 ------------------------l-----------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~ 1278 (1491)
+ ++||++||+||+.+|++|||||||+|||+.+. ...
T Consensus 113 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~ 192 (287)
T PRK13637 113 GLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK 192 (287)
T ss_pred CCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH
Confidence 0 68999999999999999999999999999987 223
Q ss_pred -cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 -KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 -~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|||+||||++++..+| |+++.|.+|
T Consensus 193 ~~g~tvi~vtHd~~~~~~~~----drv~~l~~G 221 (287)
T PRK13637 193 EYNMTIILVSHSMEDVAKLA----DRIIVMNKG 221 (287)
T ss_pred hcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3899999999999999999 999999887
No 182
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.21 E-value=2.5e-11 Score=132.41 Aligned_cols=112 Identities=20% Similarity=0.259 Sum_probs=84.4
Q ss_pred cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHH----hHH-----------------
Q psy9513 1185 NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRA----YVV----------------- 1241 (1491)
Q Consensus 1185 ~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~----~~~----------------- 1241 (1491)
+.+.+++..|..+..+.+ +=+|+ ++-++|||| .|-|.|++.+-+ ..+
T Consensus 341 G~I~F~G~~i~~~~~~~m-----rplR~-----~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL 410 (534)
T COG4172 341 GEIRFDGQDIDGLSRKEM-----RPLRR-----RMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410 (534)
T ss_pred ceEEECCccccccChhhh-----hhhhh-----hceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Confidence 346666666666665444 22333 456899998 355666654432 111
Q ss_pred ---------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHH
Q psy9513 1242 ---------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1242 ---------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~ 1293 (1491)
.. +|||+|||||++.+|.+++|||||++||.... ....|.++||||||+..+
T Consensus 411 ~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~Vv 490 (534)
T COG4172 411 EEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVV 490 (534)
T ss_pred HHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHH
Confidence 11 69999999999999999999999999998765 345689999999999999
Q ss_pred HHHhccccceEEEEecC
Q psy9513 1294 ENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1294 ~~~~~~~~~~~~~l~~~ 1310 (1491)
..+| +++++|.+|
T Consensus 491 rAl~----~~viVm~~G 503 (534)
T COG4172 491 RALC----HRVIVMRDG 503 (534)
T ss_pred HHhh----ceEEEEeCC
Confidence 9999 999999888
No 183
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.21 E-value=3.9e-11 Score=133.99 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=92.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| ++.+|...+........ ....++|+||++.+++++++.+++.++
T Consensus 39 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~------------~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~ 106 (242)
T TIGR03411 39 AGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI------------ARAGIGRKFQKPTVFENLTVFENLELALPRDK 106 (242)
T ss_pred CCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHH------------HhcCeeEeccccccCCCCCHHHHHHHhhhccc
Confidence 356777777776 22 25666654433222110 013599999999999999888765220
Q ss_pred ----------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------
Q psy9513 1242 ----------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------- 1275 (1491)
Q Consensus 1242 ----------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------- 1275 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l 186 (242)
T TIGR03411 107 SVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELL 186 (242)
T ss_pred ccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHH
Confidence 00 68999999999999999999999999999988
Q ss_pred -HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....+.|+|++|||.+++..+| |++++|.+|
T Consensus 187 ~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~g 218 (242)
T TIGR03411 187 KSLAGKHSVVVVEHDMEFVRSIA----DKVTVLHQG 218 (242)
T ss_pred HHHhcCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 1123689999999999999999 999999877
No 184
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.21 E-value=4.2e-11 Score=136.47 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=89.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhh-HHHHHHHHHHhhhhcccceEEEEccchh--hhhhhhhHHHHhHH-H
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQ-RVLACLIIRLFISDQKNFQLIVITHDEE--FIENLTAIDRAYVV-R 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~-~~~~~~ii~~~~~~~~n~~l~~i~~~~~--~~~~L~~~~~~~~~-~ 1242 (1491)
..+||=++++++ .| .+.+|+..+..... ... .. ....+||+||++. ++ .+++.+++.+. .
T Consensus 44 aGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~-----~~-----~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~ 112 (287)
T PRK13641 44 SGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNL-----KK-----LRKKVSLVFQFPEAQLF-ENTVLKDVEFGPK 112 (287)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEECccccccchH-----HH-----HHhceEEEEeChhhhhc-cchHHHHHHHHHH
Confidence 456777777766 33 26677765543210 000 00 0125899999973 44 46777665321 0
Q ss_pred ------------H------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1243 ------------I------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1243 ------------l------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~ 192 (287)
T PRK13641 113 NFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ 192 (287)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 0 68999999999999999999999999999987 33
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|||++|||++++..+| |+++.|++|
T Consensus 193 ~~g~tvlivsH~~~~~~~~~----d~v~~l~~G 221 (287)
T PRK13641 193 KAGHTVILVTHNMDDVAEYA----DDVLVLEHG 221 (287)
T ss_pred hCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 45899999999999999999 999999877
No 185
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.21 E-value=4.1e-11 Score=132.46 Aligned_cols=125 Identities=17% Similarity=0.214 Sum_probs=89.9
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .|+ +.+|+..+........ .. .....++|+||++.+++.+++.+++.+.
T Consensus 47 sGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~-----~~----~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~ 117 (228)
T PRK10584 47 SGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEAR-----AK----LRAKHVGFVFQSFMLIPTLNALENVELPALLRG 117 (228)
T ss_pred CCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHH-----HH----HHhheEEEEEcccccCCCcCHHHHHHHHHHhcC
Confidence 346666666666 222 5556655544322111 00 0123589999999999988887775210
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+. ... .|
T Consensus 118 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 197 (228)
T PRK10584 118 ESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHG 197 (228)
T ss_pred CCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999988 223 37
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||++|||.+++.. | |+++++.+|
T Consensus 198 ~tii~~sH~~~~~~~-~----d~i~~l~~g 222 (228)
T PRK10584 198 TTLILVTHDLQLAAR-C----DRRLRLVNG 222 (228)
T ss_pred CEEEEEecCHHHHHh-C----CEEEEEECC
Confidence 899999999998854 8 999999876
No 186
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=4.4e-11 Score=136.43 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=89.6
Q ss_pred CcccceeEEEEe--cc---ccccccccccchh-hHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHHhHH--
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAG-QRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRAYVV-- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~-~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~~~~-- 1241 (1491)
..+||=++++++ .| .+.+|+..+.... .... .. ....+||+||++ .|+ .+++.+++.+.
T Consensus 44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~-----~~-----~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~ 112 (290)
T PRK13634 44 SGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKL-----KP-----LRKKVGIVFQFPEHQLF-EETVEKDICFGPM 112 (290)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCEECccccccchH-----HH-----HHhhEEEEeeCchhhhh-hhhHHHHHHHHHH
Confidence 456777777766 22 3677777664321 0000 00 012599999997 344 45777665221
Q ss_pred -----------HH------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 -----------RI------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 -----------~l------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
.+ ++||++||+||+.+|++|||||||+|||+.+. ..
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~ 192 (290)
T PRK13634 113 NFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192 (290)
T ss_pred HcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999998 22
Q ss_pred h-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 Q-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. .|.|||+||||++++..+| |++++|.+|
T Consensus 193 ~~~g~tviiitHd~~~~~~~~----drv~~l~~G 222 (290)
T PRK13634 193 KEKGLTTVLVTHSMEDAARYA----DQIVVMHKG 222 (290)
T ss_pred HhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3 4899999999999999999 999999877
No 187
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.20 E-value=3.6e-11 Score=131.31 Aligned_cols=63 Identities=22% Similarity=0.364 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|+|+||||.+++..+| |+++.|.+|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~----d~i~~l~~~ 208 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYF----DRVLLLNRT 208 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEcCc
Confidence 68999999999999999999999999999988 2336789999999999999999 999999653
No 188
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.20 E-value=4.2e-11 Score=131.99 Aligned_cols=87 Identities=21% Similarity=0.277 Sum_probs=73.2
Q ss_pred EEEccchhhhhhhhhHHHHhHH---------------HH-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1220 IVITHDEEFIENLTAIDRAYVV---------------RI-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1220 ~~i~~~~~~~~~L~~~~~~~~~---------------~l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
+|+||++.+++.+++.+++.++ .+ ++||++||+||+.+|++|
T Consensus 57 ~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 136 (230)
T TIGR01184 57 MVVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVL 136 (230)
T ss_pred eEEecCcccCCCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 6888888888877777764210 00 689999999999999999
Q ss_pred EEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.+. ... .|.|+|+||||++++..+| |+++.|.+|
T Consensus 137 lLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~----d~v~~l~~G 191 (230)
T TIGR01184 137 LLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLS----DRVVMLTNG 191 (230)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEeCC
Confidence 99999999999998 222 4789999999999999999 999999877
No 189
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.20 E-value=4.5e-11 Score=132.42 Aligned_cols=125 Identities=18% Similarity=0.251 Sum_probs=91.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|+..+........ +. .....++|+||++.+++.++..+++.+.
T Consensus 46 sGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~-----~~----~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 116 (233)
T PRK11629 46 SGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK-----AE----LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK 116 (233)
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH-----HH----HHhccEEEEecCcccCCCCCHHHHHHHHHHhcC
Confidence 456777777766 22 25666666654432111 00 0123599999999999998988875220
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
++ ++||++||+||+.+|++|||||||+|||+.+. ... .|
T Consensus 117 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g 196 (233)
T PRK11629 117 KKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196 (233)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 00 68999999999999999999999999999988 222 48
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||.+++..+ +++++|.+|
T Consensus 197 ~tvii~sH~~~~~~~~-----~~~~~l~~G 221 (233)
T PRK11629 197 TAFLVVTHDLQLAKRM-----SRQLEMRDG 221 (233)
T ss_pred CEEEEEeCCHHHHHhh-----CEEEEEECC
Confidence 9999999999998764 677888766
No 190
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.20 E-value=5.8e-11 Score=137.66 Aligned_cols=63 Identities=16% Similarity=0.276 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+||++||+||+.+|++|||||||++||+.+. ... .|.|+|+||||+.++..+| |++++|..|
T Consensus 163 ~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~----dri~vm~~G 235 (330)
T PRK15093 163 ECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA----DKINVLYCG 235 (330)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 79999999999999999999999999999888 233 4899999999999999999 999999887
No 191
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.20 E-value=1.9e-11 Score=128.24 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=75.5
Q ss_pred eeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
+.++|+ +.|+.. .+ .+|+|+++ +++|+||+||||||||++| +|...|++ |.+++.|..+...+.
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLnii----g~ld~pt~--G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLL----GGLDKPTS--GEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHH----hcccCCCC--ceEEECCEEcCcCCHH
Confidence 457777 566432 24 78888876 9999999999999999999 99999987 999999977754222
Q ss_pred ---HHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 77 ---ASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 77 ---~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...+..+||+ |..++.+..++..+|.+++.
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~ 109 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLL 109 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHH
Confidence 2345579999 99999999999999998654
No 192
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.20 E-value=4.6e-11 Score=132.34 Aligned_cols=63 Identities=25% Similarity=0.405 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. .... |.|||++|||.+++..+| |+++.|.+|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~G 222 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIA----DRVAVMYAG 222 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc----CeEEEEeCC
Confidence 68999999999999999999999999999987 2233 789999999999999999 999999876
No 193
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=4.4e-11 Score=133.34 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=92.5
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+.......+ ...++|+||++.+++.++..+++.++
T Consensus 38 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 104 (242)
T cd03295 38 SGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVEL-------------RRKIGYVIQQIGLFPHMTVEENIALVPKLLK 104 (242)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHh-------------hcceEEEccCccccCCCcHHHHHHHHHHHcC
Confidence 456777777776 22 25666665543222110 12589999999999888877775211
Q ss_pred --------H--------------H-----------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-
Q psy9513 1242 --------R--------------I-----------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ- 1278 (1491)
Q Consensus 1242 --------~--------------l-----------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~- 1278 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ...
T Consensus 105 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~ 184 (242)
T cd03295 105 WPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE 184 (242)
T ss_pred CCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH
Confidence 0 1 68999999999999999999999999999987 223
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.+||++|||.+++..+| |++++|.+|
T Consensus 185 ~g~tvii~sH~~~~~~~~~----d~i~~l~~G 212 (242)
T cd03295 185 LGKTIVFVTHDIDEAFRLA----DRIAIMKNG 212 (242)
T ss_pred cCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 3889999999999999999 999999887
No 194
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.20 E-value=4.2e-11 Score=135.17 Aligned_cols=127 Identities=17% Similarity=0.226 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc------ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH--
Q psy9513 1172 KRRTYNYRVVQK--KN------GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-- 1241 (1491)
..+||=++++++ .| .+.+++.++........ - ... ....++|+||++.+++.+++.+++.+.
T Consensus 41 sGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~--~-~~~-----~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 112 (262)
T PRK09984 41 SGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR--D-IRK-----SRANTGYIFQQFNLVNRLSVLENVLIGAL 112 (262)
T ss_pred CCHHHHHHHHhccCCCCCCCceEEEECCEecccccccch--h-HHH-----HHhheEEEccccccccCCcHHHHHHhhhc
Confidence 456777777776 32 35566665544220000 0 000 013589999999999988888775210
Q ss_pred -------------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----
Q psy9513 1242 -------------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---- 1275 (1491)
Q Consensus 1242 -------------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---- 1275 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 192 (262)
T PRK09984 113 GSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192 (262)
T ss_pred ccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHH
Confidence 00 68999999999999999999999999999988
Q ss_pred -----Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -----SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -----~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. ..|.|||++|||.+++..+| |++++|.+|
T Consensus 193 ~~l~~~~~~~g~tvii~tH~~~~~~~~~----d~i~~l~~g 229 (262)
T PRK09984 193 DTLRDINQNDGITVVVTLHQVDYALRYC----ERIVALRQG 229 (262)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 22 24789999999999999999 999999877
No 195
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.19 E-value=1.8e-11 Score=138.64 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=85.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC-CCcHHHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG-KKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~-~~~~~~~ 79 (1491)
.|.++|+ |.|++..+ .+|+|++. +.+|+|.|||||||||++| ||.+.|++ |.|+++|..+. ..+.+++
T Consensus 4 ~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL----~G~~~P~~--GeI~v~G~~v~~~sP~dA~ 77 (501)
T COG3845 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKIL----FGLYQPDS--GEIRVDGKEVRIKSPRDAI 77 (501)
T ss_pred eEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHH----hCcccCCc--ceEEECCEEeccCCHHHHH
Confidence 4889999 89997666 88888876 9999999999999999999 99999999 99999998773 3556788
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
+.|++++ |++.+.+..+|..+|.+....
T Consensus 78 ~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~ 106 (501)
T COG3845 78 RLGIGMVHQHFMLVPTLTVAENIILGLEP 106 (501)
T ss_pred HcCCcEEeeccccccccchhhhhhhcCcc
Confidence 8999999 999999999999999887653
No 196
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.19 E-value=4.8e-11 Score=134.50 Aligned_cols=123 Identities=15% Similarity=0.248 Sum_probs=92.0
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ + +.+.+++..+........ ....++|+||++.+++++++.+|+.+.
T Consensus 42 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~------------~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 109 (255)
T PRK11300 42 AGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI------------ARMGVVRTFQHVRLFREMTVIENLLVAQHQQL 109 (255)
T ss_pred CCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHH------------HhcCeEEeccCcccCCCCcHHHHHHHhhhccc
Confidence 356776766666 2 225666665543321110 123588999999999988887754210
Q ss_pred -----------------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH
Q psy9513 1242 -----------------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA 1275 (1491)
Q Consensus 1242 -----------------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~ 1275 (1491)
.. ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 110 KTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKET 189 (255)
T ss_pred cchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHH
Confidence 00 68999999999999999999999999999988
Q ss_pred ---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.... |.|||++|||.+++..+| |++++|.+|
T Consensus 190 ~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~g 230 (255)
T PRK11300 190 KELDELIAELRNEHNVTVLLIEHDMKLVMGIS----DRIYVVNQG 230 (255)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 2233 789999999999999999 999999877
No 197
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.19 E-value=5.2e-11 Score=133.72 Aligned_cols=89 Identities=16% Similarity=0.263 Sum_probs=76.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH--------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV--------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~--------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.++|+||++.|++.++..+++.+. .+ ++||++||+||+.+|++
T Consensus 88 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 167 (252)
T TIGR03005 88 KIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKV 167 (252)
T ss_pred CeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 589999999999988887775321 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||+|||+.+. ... .|.|+|+||||++++..+| |++++|.+|
T Consensus 168 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 223 (252)
T TIGR03005 168 MLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFA----DRVCFFDKG 223 (252)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 999999999999987 223 3889999999999999999 999999887
No 198
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.19 E-value=4.6e-11 Score=133.22 Aligned_cols=123 Identities=14% Similarity=0.158 Sum_probs=92.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| ++.+++..+........ . ..+++|+||++.+++.++..+|+.++
T Consensus 40 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~----~--------~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~ 107 (241)
T PRK10895 40 AGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHAR----A--------RRGIGYLPQEASIFRRLSVYDNLMAVLQIRD 107 (241)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH----H--------HhCeEEeccCCcccccCcHHHHHhhhhhccc
Confidence 356777777776 22 25666655533221000 0 12599999999999888887765210
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.. ++||++||+||+.+|++|+|||||+|||+.+. ....|
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g 187 (241)
T PRK10895 108 DLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSG 187 (241)
T ss_pred ccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 00 68999999999999999999999999999987 23458
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||.+++..+| |+++.|.+|
T Consensus 188 ~tiii~sH~~~~~~~~~----d~v~~l~~G 213 (241)
T PRK10895 188 LGVLITDHNVRETLAVC----ERAYIVSQG 213 (241)
T ss_pred CEEEEEEcCHHHHHHhc----CEEEEEeCC
Confidence 89999999999999999 999999877
No 199
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.19 E-value=5.2e-11 Score=132.22 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=89.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ +| .+.+|+.++...... . + ..++|+||++.+++.++..+++.++ .
T Consensus 38 sGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~--------~-~-----~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~ 103 (236)
T TIGR03864 38 AGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA--------A-L-----ARLGVVFQQPTLDLDLSVRQNLRYHAALHG 103 (236)
T ss_pred CCHHHHHHHHhCCcCCCceEEEECCEEcccCChh--------h-h-----hhEEEeCCCCCCcccCcHHHHHHHHHHhcC
Confidence 456777777776 22 255666555332210 0 1 1589999999988888887775221 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcC
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKN 1280 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~ 1280 (1491)
+ ++||++||+||+.+|++++|||||+|||+.+. .. ..|
T Consensus 104 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~ 183 (236)
T TIGR03864 104 LSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQG 183 (236)
T ss_pred CCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCC
Confidence 0 68999999999999999999999999999988 22 247
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||.+++.. | |+++.|.+|
T Consensus 184 ~tiii~sH~~~~~~~-~----d~i~~l~~G 208 (236)
T TIGR03864 184 LSVLWATHLVDEIEA-D----DRLVVLHRG 208 (236)
T ss_pred CEEEEEecChhhHhh-C----CEEEEEeCC
Confidence 899999999999974 8 999999876
No 200
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.18 E-value=2.8e-11 Score=137.00 Aligned_cols=94 Identities=16% Similarity=0.291 Sum_probs=80.3
Q ss_pred ceeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.+.+.|+ +.|+ +..+ .+|+|+++ ++||+|||||||||+|++| +|..+|.+ |.|.+.|...... ....
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l----~gl~~p~~--G~i~i~G~~~~~~-~~~~ 76 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKIL----AGLLKPTS--GEILVLGYDVVKE-PAKV 76 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHH----hCCcCCCc--eEEEEcCEeCccC-HHHH
Confidence 4788999 7999 5666 89999886 9999999999999999999 99999988 9999999777433 3456
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+..++|+ |++.+.+..++..++.+.-.
T Consensus 77 ~~~igy~~~~~~~~~~lT~~e~l~~~~~ 104 (293)
T COG1131 77 RRRIGYVPQEPSLYPELTVRENLEFFAR 104 (293)
T ss_pred HhheEEEccCCCCCccccHHHHHHHHHH
Confidence 6779999 99999999999999887543
No 201
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=4.7e-11 Score=132.21 Aligned_cols=120 Identities=14% Similarity=0.249 Sum_probs=92.1
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-H----
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-V---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~---- 1241 (1491)
..+||=++++++ . +.+.+|+.++..... .+..++|+||++.++++++..+++.+ .
T Consensus 36 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---------------~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 100 (232)
T PRK10771 36 AGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---------------SRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL 100 (232)
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---------------hhccEEEEecccccccCCcHHHHHhccccccc
Confidence 356777777776 2 225666665543211 02369999999999998888877521 0
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~ 1280 (1491)
.+ ++||++||+||+.+|++++|||||+|||+.+. .. ..|
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~ 180 (232)
T PRK10771 101 KLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQ 180 (232)
T ss_pred CCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 01 68999999999999999999999999999987 22 237
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||.+++..+| |+++.|.+|
T Consensus 181 ~tiii~sH~~~~~~~~~----d~i~~l~~g 206 (232)
T PRK10771 181 LTLLMVSHSLEDAARIA----PRSLVVADG 206 (232)
T ss_pred CEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999876
No 202
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=5.1e-11 Score=135.05 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=91.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ +| .+.+|+..+.......+ ...+||+||++. ++..+++.+++.+.
T Consensus 44 aGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~-------------~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~ 110 (279)
T PRK13635 44 SGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDV-------------RRQVGMVFQNPDNQFVGATVQDDVAFGLENI 110 (279)
T ss_pred CcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH-------------hhheEEEEeCHHHhcccccHHHHHhhhHhhC
Confidence 457777777776 32 26677776654322111 235999999984 67777888776321
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK- 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~- 1279 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+. ....
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~ 190 (279)
T PRK13635 111 GVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190 (279)
T ss_pred CCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 00 68999999999999999999999999999988 2333
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||++|||++++. .| |+++.|.+|
T Consensus 191 ~~tilivsH~~~~~~-~~----d~i~~l~~G 216 (279)
T PRK13635 191 GITVLSITHDLDEAA-QA----DRVIVMNKG 216 (279)
T ss_pred CCEEEEEecCHHHHH-cC----CEEEEEECC
Confidence 899999999999987 48 999999877
No 203
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=6e-11 Score=135.19 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. .. ..|.|||+||||++++..+| |++++|.+|
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~----dri~~l~~G 222 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYA----DEVIVMKEG 222 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999998 22 34899999999999999999 999999877
No 204
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=5.2e-11 Score=133.83 Aligned_cols=122 Identities=17% Similarity=0.202 Sum_probs=90.4
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+.......+ ...++|+||++.+++++++.+++.+.
T Consensus 39 sGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~ 105 (255)
T PRK11231 39 CGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL-------------ARRLALLPQHHLTPEGITVRELVAYGRSPWL 105 (255)
T ss_pred CCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHH-------------hhheEEecccCCCCCCccHHHHHHhccchhh
Confidence 356777777766 22 25555554432211110 12589999999888888777664210
Q ss_pred ------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 ------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~ 185 (255)
T PRK11231 106 SLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185 (255)
T ss_pred hhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999988 23
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|+|++|||++++..+| |+++.|.+|
T Consensus 186 ~~~~tiii~tH~~~~~~~~~----d~i~~l~~G 214 (255)
T PRK11231 186 TQGKTVVTVLHDLNQASRYC----DHLVVLANG 214 (255)
T ss_pred HCCCEEEEEECCHHHHHHhc----CEEEEEECC
Confidence 35889999999999999999 999999877
No 205
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.18 E-value=6.3e-11 Score=130.91 Aligned_cols=87 Identities=15% Similarity=0.270 Sum_probs=73.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH--------------HH-------------------------hhhHHHHHHHhhcCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV--------------RI-------------------------VRDHKALAETFSRNC 1258 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~--------------~l-------------------------~~~~~~~a~~~~~~~ 1258 (1491)
.++|+||++.++ .+++.+++.+. .+ ++||++||+||+.+|
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 589999999888 78877765210 00 469999999999999
Q ss_pred CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1259 GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1259 ~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|+|||||+|||+.+. .... .|+|++|||.+++..+| |+++.|.+|
T Consensus 161 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~----d~i~~l~~G 216 (227)
T cd03260 161 EVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVA----DRTAFLLNG 216 (227)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhC----CEEEEEeCC
Confidence 99999999999999988 2233 79999999999999999 999999877
No 206
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.18 E-value=4.4e-11 Score=122.77 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=99.4
Q ss_pred cccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1173 RRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
.+||-++.+++ + +.+.+++.++.++--... .+ ..|+|+||....|+.||+.+|+...
T Consensus 41 GKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r----~r--------~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~ 108 (237)
T COG0410 41 GKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER----AR--------LGIAYVPEGRRIFPRLTVEENLLLGAYARRD 108 (237)
T ss_pred CHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHH----Hh--------CCeEeCcccccchhhCcHHHHHhhhhhcccc
Confidence 56777777776 2 347889988887754222 23 4899999999999999999986421
Q ss_pred ----------------HH--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcCc
Q psy9513 1242 ----------------RI--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKNF 1281 (1491)
Q Consensus 1242 ----------------~l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~~ 1281 (1491)
++ .+|++||||||+.+|++|+|||||.||-|.-+ .. ..|.
T Consensus 109 ~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~ 188 (237)
T COG0410 109 KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGM 188 (237)
T ss_pred cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCc
Confidence 11 47899999999999999999999999998876 33 3478
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||+|-++..++..++ |++|+|.+|
T Consensus 189 tIlLVEQn~~~Al~ia----Dr~yvle~G 213 (237)
T COG0410 189 TILLVEQNARFALEIA----DRGYVLENG 213 (237)
T ss_pred EEEEEeccHHHHHHhh----CEEEEEeCC
Confidence 9999999999999999 999999988
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.18 E-value=1.4e-07 Score=117.97 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=52.4
Q ss_pred hhhHHHHHHHhhcC----CCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1244 VRDHKALAETFSRN----CGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~----~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
+++|++||++++.. |++|||||||+|||+.+. ....+.|||+|||++.++. +| |+++.|.++.
T Consensus 445 e~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~-~a----d~~~~l~k~~ 519 (563)
T TIGR00634 445 ELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAA-HA----DAHFKVEKEG 519 (563)
T ss_pred HHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHH-hc----CeEEEEEEcc
Confidence 35666999988875 699999999999999988 2235899999999998885 78 9999998763
No 208
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=5.8e-11 Score=134.75 Aligned_cols=121 Identities=18% Similarity=0.185 Sum_probs=90.3
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch-hhhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE-EFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~-~~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ . +.+.+|+..+.......+ | ..+||+||++ .++.++++.+++.+.
T Consensus 44 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~--------~-----~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (279)
T PRK13650 44 SGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDI--------R-----HKIGMVFQNPDNQFVGATVEDDVAFGLENK 110 (279)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHH--------H-----hhceEEEcChHHhcccccHHHHHHhhHHhC
Confidence 456777777766 2 236677766643222111 1 2589999998 477778888776321
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ... .
T Consensus 111 ~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~ 190 (279)
T PRK13650 111 GIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190 (279)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 00 68999999999999999999999999999987 233 3
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++. +| |++++|.+|
T Consensus 191 g~tilivtH~~~~~~-~~----dri~~l~~G 216 (279)
T PRK13650 191 QMTVISITHDLDEVA-LS----DRVLVMKNG 216 (279)
T ss_pred CCEEEEEecCHHHHH-hC----CEEEEEECC
Confidence 899999999999984 78 999999877
No 209
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=8.6e-11 Score=132.22 Aligned_cols=63 Identities=21% Similarity=0.379 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |++++|.+|
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 229 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARIS----DYTGFFLMG 229 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1124789999999999999999 999999877
No 210
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.16 E-value=7.9e-11 Score=131.01 Aligned_cols=121 Identities=18% Similarity=0.217 Sum_probs=88.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+..... ... ...++|+||++.+++ .+..+++.+.
T Consensus 40 sGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--------~~~-----~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~ 105 (241)
T PRK14250 40 AGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV--------IDL-----RRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG 105 (241)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh--------HHh-----hhcEEEEecCchhch-hhHHHHHhcchhhcC
Confidence 356777777766 22 25666655533211 010 125899999988876 4666654210
Q ss_pred ----HH------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceE
Q psy9513 1242 ----RI------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQL 1283 (1491)
Q Consensus 1242 ----~l------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~ 1283 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+. ... .|.||
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~ti 185 (241)
T PRK14250 106 EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTV 185 (241)
T ss_pred cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEE
Confidence 00 68999999999999999999999999999987 223 48899
Q ss_pred EEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1284 IVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1284 i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|||.+++..+| |+++.|.+|
T Consensus 186 i~~sH~~~~~~~~~----d~i~~l~~G 208 (241)
T PRK14250 186 IWITHNMEQAKRIG----DYTAFLNKG 208 (241)
T ss_pred EEEeccHHHHHHhC----CEEEEEeCC
Confidence 99999999999999 999999877
No 211
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=8e-11 Score=133.20 Aligned_cols=122 Identities=15% Similarity=0.090 Sum_probs=88.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhh-hhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEF-IENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~-~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ +| .+.+++..+..... .. .+ ...+||+||++.+ +..++..+++.+.
T Consensus 39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~---~~--------~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 106 (274)
T PRK13644 39 SGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK-LQ---GI--------RKLVGIVFQNPETQFVGRTVEEDLAFGPENL 106 (274)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEECCcccc-HH---HH--------HhheEEEEEChhhhcccchHHHHHHhhHHHc
Confidence 456777777776 22 25666665543211 00 00 1248999999863 5567777765221
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.+ ++||++||+||+.+|++|||||||+|||+.+. ....|
T Consensus 107 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g 186 (274)
T PRK13644 107 CLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186 (274)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 00 68999999999999999999999999999987 33458
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++|||++++. .| |++++|.+|
T Consensus 187 ~til~~tH~~~~~~-~~----d~v~~l~~G 211 (274)
T PRK13644 187 KTIVYITHNLEELH-DA----DRIIVMDRG 211 (274)
T ss_pred CEEEEEecCHHHHh-hC----CEEEEEECC
Confidence 99999999999984 58 999999887
No 212
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=9.4e-11 Score=129.66 Aligned_cols=90 Identities=18% Similarity=0.308 Sum_probs=77.2
Q ss_pred ceEEEEccchhhhhhhhhHHHHhH-H------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYV-V------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~-~------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
..++|+||++.++.+++..+++.+ . .+ ++||++||+||+.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (232)
T cd03300 72 RPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV 151 (232)
T ss_pred cceEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 368999999999999888877531 0 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|||||+|||+.+. ... .|.|+|++||+.+++..+| |+++.|.+|
T Consensus 152 lllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~----d~i~~l~~G 207 (232)
T cd03300 152 LLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMS----DRIAVMNKG 207 (232)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 999999999999998 223 3889999999999999999 999999877
No 213
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.16 E-value=5.5e-11 Score=147.48 Aligned_cols=123 Identities=13% Similarity=0.194 Sum_probs=94.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++..+........ ....+||+||++.+++++++.+++.+.
T Consensus 48 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~------------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 115 (510)
T PRK15439 48 AGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKA------------HQLGIYLVPQEPLLFPNLSVKENILFGLPKRQ 115 (510)
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHH------------HhCCEEEEeccCccCCCCcHHHHhhcccccch
Confidence 457777777776 33 25566655543221110 123699999999999999988875321
Q ss_pred ----H--------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEE
Q psy9513 1242 ----R--------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIV 1285 (1491)
Q Consensus 1242 ----~--------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~ 1285 (1491)
+ + ++||++||+||+.+|++|+|||||+|||+.+. ....|.+||+
T Consensus 116 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii 195 (510)
T PRK15439 116 ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVF 195 (510)
T ss_pred HHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 0 0 79999999999999999999999999999988 2345899999
Q ss_pred EccCHHHHHHHhccccceEEEEecC
Q psy9513 1286 ITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1286 ~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||||++++..+| |++++|.+|
T Consensus 196 vtHd~~~~~~~~----d~i~~l~~G 216 (510)
T PRK15439 196 ISHKLPEIRQLA----DRISVMRDG 216 (510)
T ss_pred EeCCHHHHHHhC----CEEEEEECC
Confidence 999999999999 999999877
No 214
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.16 E-value=7.9e-11 Score=132.23 Aligned_cols=122 Identities=16% Similarity=0.194 Sum_probs=90.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+++..+.......+ ...++|+||++.+++.+++.+++.+.
T Consensus 39 sGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 105 (258)
T PRK13548 39 AGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAEL-------------ARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG 105 (258)
T ss_pred CCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHh-------------hhheEEEccCCcCCCCCCHHHHHHhhhcccC
Confidence 456777777766 22 25556555433211000 12589999999888888887775210
Q ss_pred --------HH-----------------------hhhHHHHHHHhh------cCCCeeEEcCCCCCCChHhH---------
Q psy9513 1242 --------RI-----------------------VRDHKALAETFS------RNCGIFALDEPTTNLDIKNA--------- 1275 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~------~~~~~l~lDEp~~~lD~~~~--------- 1275 (1491)
.+ ++||++||+||+ .+|++|+|||||+|||+.+.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (258)
T PRK13548 106 LSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ 185 (258)
T ss_pred CCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 00 689999999999 59999999999999999987
Q ss_pred Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. ..|.|||++|||.+++..+| |+++.|.+|
T Consensus 186 ~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 217 (258)
T PRK13548 186 LAHERGLAVIVVLHDLNLAARYA----DRIVLLHQG 217 (258)
T ss_pred HHHhcCCEEEEEECCHHHHHHhc----CEEEEEECC
Confidence 23 45889999999999999999 999999877
No 215
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.16 E-value=7.3e-11 Score=122.05 Aligned_cols=74 Identities=19% Similarity=0.280 Sum_probs=65.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEcc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITH 1288 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~th 1288 (1491)
.++|+|| +..-++||++||+||+.+|++|+|||||++||+.+. ....+.|+|++||
T Consensus 76 ~i~~~~q---------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 140 (163)
T cd03216 76 GIAMVYQ---------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140 (163)
T ss_pred CeEEEEe---------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 5888888 344478999999999999999999999999999987 2345889999999
Q ss_pred CHHHHHHHhccccceEEEEecC
Q psy9513 1289 DEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1289 d~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.+++..+| |+++.+.+|
T Consensus 141 ~~~~~~~~~----d~~~~l~~g 158 (163)
T cd03216 141 RLDEVFEIA----DRVTVLRDG 158 (163)
T ss_pred CHHHHHHhC----CEEEEEECC
Confidence 999999999 999999876
No 216
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.16 E-value=9e-11 Score=127.90 Aligned_cols=88 Identities=17% Similarity=0.231 Sum_probs=74.9
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------------HH--------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------------RI--------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------------~l--------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
.++|++|++.++++++..+++.+. .+ ++||++||++|+.+|++|+||
T Consensus 83 ~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (214)
T PRK13543 83 FMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD 162 (214)
T ss_pred ceEEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 589999999999888887765210 00 689999999999999999999
Q ss_pred CCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1265 EPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|||++||+.+. ....|.|+|++|||.+++..+| ++++.++.
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~----~~i~~l~~ 212 (214)
T PRK13543 163 EPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR----TRMLTLEA 212 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc----ceEEEEee
Confidence 99999999997 2345789999999999999999 99988854
No 217
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=1e-10 Score=129.56 Aligned_cols=120 Identities=17% Similarity=0.187 Sum_probs=91.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR---- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~---- 1242 (1491)
..+||=++++++ .| .+.+++.++..... ....++|+||++.+++.++..+++.+..
T Consensus 36 ~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~---------------~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~ 100 (235)
T cd03299 36 SGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---------------EKRDISYVPQNYALFPHMTVYKNIAYGLKKRK 100 (235)
T ss_pred CCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh---------------hHcCEEEEeecCccCCCccHHHHHHHHHHHcC
Confidence 346666666665 22 24556555543211 0136999999999998888877753210
Q ss_pred -----H---------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cC
Q psy9513 1243 -----I---------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KN 1280 (1491)
Q Consensus 1243 -----l---------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~ 1280 (1491)
. ++||++||+|++.+|++++|||||+|||+.+. ... .|
T Consensus 101 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~ 180 (235)
T cd03299 101 VDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFG 180 (235)
T ss_pred CCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 0 68999999999999999999999999999998 222 38
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|++||+++++..+| |++++|++|
T Consensus 181 ~tili~tH~~~~~~~~~----d~i~~l~~G 206 (235)
T cd03299 181 VTVLHVTHDFEEAWALA----DKVAIMLNG 206 (235)
T ss_pred CEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999 999999876
No 218
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.15 E-value=1.2e-10 Score=128.86 Aligned_cols=63 Identities=24% Similarity=0.396 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++++|||||++||+.+. .. ..+.+||+||||++++..+| |+++.|..+
T Consensus 120 e~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~----d~i~~l~~~ 192 (246)
T cd03237 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLA----DRLIVFEGE 192 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEcCC
Confidence 68999999999999999999999999999988 22 24789999999999999999 999999654
No 219
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.15 E-value=1e-10 Score=131.27 Aligned_cols=89 Identities=19% Similarity=0.357 Sum_probs=75.9
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-HH-------------------------------H----------hhhHHHHHHHhh
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-VR-------------------------------I----------VRDHKALAETFS 1255 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~~-------------------------------l----------~~~~~~~a~~~~ 1255 (1491)
.+||+||++.+++.+++.+|+.+ .. + ++||++||+||+
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 69999999998888888777521 00 0 579999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|+|||||+|||+.+. ....+.|+|++|||++++..+| |+++.|.+|
T Consensus 163 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 221 (250)
T PRK14247 163 FQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARIS----DYVAFLYKG 221 (250)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 99999999999999999988 1134789999999999999999 999999877
No 220
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.15 E-value=1.1e-10 Score=129.37 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=77.4
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-H------------H-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-R------------I-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-~------------l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
..++|+||++.|+++++..+|+.+. . + ++||++||++|+.+|++
T Consensus 72 ~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l 151 (237)
T TIGR00968 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV 151 (237)
T ss_pred cCEEEEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 4699999999999998888775221 0 0 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|||||+|||+.+. .... +.|+|++||+.+++..+| |++++|..|
T Consensus 152 lllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~----d~i~~l~~g 207 (237)
T TIGR00968 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVA----DRIVVMSNG 207 (237)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc----CEEEEEECC
Confidence 999999999999998 2233 789999999999999999 999999877
No 221
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=5e-11 Score=119.13 Aligned_cols=95 Identities=12% Similarity=0.239 Sum_probs=76.0
Q ss_pred eeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+..|+. +..+... .+++|+.. +++|+|||||||||||++| +|.+.|++ |.+.++|..+.........+
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~L----sGel~p~~--G~v~~~g~~l~~~~~~~lA~ 75 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKAL----SGELSPDS--GEVTLNGVPLNSWPPEELAR 75 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHh----hCccCCCC--CeEeeCCcChhhCCHHHHHH
Confidence 5677773 6666666 77777764 9999999999999999999 99999999 99999998886544444444
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
.-+.. |...+.++.++.+.|.+..-.
T Consensus 76 ~raVlpQ~s~laFpFtv~eVV~mGr~p 102 (259)
T COG4559 76 HRAVLPQNSSLAFPFTVQEVVQMGRIP 102 (259)
T ss_pred HhhhcccCcccccceEHHHHHHhcccc
Confidence 55556 888888999999999887653
No 222
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.15 E-value=1.1e-10 Score=131.69 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|||+||||++++..+| |+++.|.+|
T Consensus 155 e~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~----d~i~~l~~G 227 (265)
T TIGR02769 155 QLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFC----QRVAVMDKG 227 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHh----cEEEEEeCC
Confidence 68999999999999999999999999999876 223 3889999999999999999 999999876
No 223
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.15 E-value=1.2e-10 Score=128.92 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .+.|||+||||.+++..+| |+++.|.+|
T Consensus 158 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 230 (236)
T cd03267 158 QRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALA----RRVLVIDKG 230 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhC----CEEEEEeCC
Confidence 68999999999999999999999999999998 222 3789999999999999999 999999876
No 224
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.15 E-value=8.8e-11 Score=132.58 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=90.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+..+.......+ ...++|+||++.+++.++..+++.+.
T Consensus 44 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~ 110 (265)
T PRK10253 44 CGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV-------------ARRIGLLAQNATTPGDITVQELVARGRYPHQ 110 (265)
T ss_pred CCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHH-------------hhheEEeeccCcCCCCCcHHHHHHhCccccc
Confidence 456777777776 22 25556554432211111 12589999999888877776654210
Q ss_pred ------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 ------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~ 190 (265)
T PRK10253 111 PLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190 (265)
T ss_pred ccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHH
Confidence 00 58999999999999999999999999999987 22
Q ss_pred h-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 Q-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. .|.|+|++|||++++..+| |+++.|.+|
T Consensus 191 ~~~~~tiii~tH~~~~~~~~~----d~i~~l~~G 220 (265)
T PRK10253 191 REKGYTLAAVLHDLNQACRYA----SHLIALREG 220 (265)
T ss_pred HhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3 3789999999999999999 999999877
No 225
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.14 E-value=9.6e-11 Score=129.15 Aligned_cols=86 Identities=27% Similarity=0.356 Sum_probs=71.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------------H---H---------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------------R---I---------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------------~---l---------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
+++|+||++.+++.+++.+++.+. . + ++||++||+||+.+|++
T Consensus 91 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 91 TIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred ceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 589999999888877766554210 0 0 58999999999999999
Q ss_pred eEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
|+|||||+|||+.+. ....|.|+|+||||.+++..+| |+++.+
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~----d~i~~~ 222 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVA----DRVMDV 222 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----ceeEec
Confidence 999999999999988 2345889999999999999999 988876
No 226
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.14 E-value=1.1e-10 Score=128.53 Aligned_cols=90 Identities=19% Similarity=0.232 Sum_probs=75.7
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-------------------H-H--------------------hhhHHHHHHHhhc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-------------------R-I--------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-------------------~-l--------------------~~~~~~~a~~~~~ 1256 (1491)
.+++|+||++.+++++++.+++.+. . . ++||++||+||+.
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 160 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLW 160 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHh
Confidence 3589999999999988877665210 1 1 5899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCH-HHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDE-EFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~-~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||+|||+.+. ....+.|+|++||+. +.+..+| |++++|..|
T Consensus 161 ~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~----d~i~~l~~G 220 (226)
T cd03234 161 DPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLF----DRILLLSSG 220 (226)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhC----CEEEEEeCC
Confidence 9999999999999999988 234578999999998 6888899 999999876
No 227
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.14 E-value=5.4e-11 Score=137.57 Aligned_cols=92 Identities=17% Similarity=0.199 Sum_probs=77.7
Q ss_pred cceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 5 DQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 5 ~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
..|.++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+... ....
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L----~Gl~~p~~--G~i~i~G~~~~~~-~~~~ 112 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMI----LGMTSPDA--GKITVLGVPVPAR-ARLA 112 (340)
T ss_pred eeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----HcCCCCCc--eEEEECCEECCcc-hHHH
Confidence 35899999 79987666 89999976 9999999999999999999 99999998 9999999776432 2345
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
+.+++|+ |++.+.+..++..++.+
T Consensus 113 ~~~ig~v~q~~~~~~~~tv~e~l~~ 137 (340)
T PRK13536 113 RARIGVVPQFDNLDLEFTVRENLLV 137 (340)
T ss_pred hccEEEEeCCccCCCCCcHHHHHHH
Confidence 6789999 99888888888888875
No 228
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.3e-10 Score=132.27 Aligned_cols=63 Identities=22% Similarity=0.329 Sum_probs=57.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|||++|||++++..+| |++++|.+|
T Consensus 146 ~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~----dri~~l~~G 218 (283)
T PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYC----DNVFVMKEG 218 (283)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999998 222 3889999999999999999 999999887
No 229
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=4.7e-11 Score=127.12 Aligned_cols=96 Identities=15% Similarity=0.214 Sum_probs=81.7
Q ss_pred eeeecc-cccCC-----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC---
Q psy9513 7 LHIMGI-RNFPA-----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK--- 73 (1491)
Q Consensus 7 l~i~~~-~~~~~-----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~--- 73 (1491)
|+++++ |.|+. ..+ .+|+|+++ ++||+|++|||||||+++| .++..|++ |.|+++|..+..
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~i----N~Le~Pts--G~v~v~G~di~~l~~ 75 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI----NLLERPTS--GSVFVDGQDLTALSE 75 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHH----hccCCCCC--ceEEEcCEecccCCh
Confidence 678888 67765 234 78999987 9999999999999999999 99999999 999999966643
Q ss_pred CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhcccc
Q psy9513 74 KDEASASSGKNFV-HDPRIGKKDETHAIVKLQCTCE 108 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~~ 108 (1491)
......++.++++ |.+++....+|..+|.|++.-.
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia 111 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA 111 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc
Confidence 3345677889999 9999999999999999988743
No 230
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.1e-10 Score=131.67 Aligned_cols=89 Identities=20% Similarity=0.335 Sum_probs=75.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-----------------HH-----------------------hhhHHHHHHHhhcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-----------------RI-----------------------VRDHKALAETFSRN 1257 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-----------------~l-----------------------~~~~~~~a~~~~~~ 1257 (1491)
.++|+||++.++++++..+++.+. .+ ++||++||+||+.+
T Consensus 86 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 86 KVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred heEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 589999998888888877665210 00 68999999999999
Q ss_pred CCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1258 CGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1258 ~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|||||||+|||+.+. ... .|.++|++|||.+++..+| |+++.|.+|
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~----d~i~~l~~G 224 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYC----DYLVALRGG 224 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 999999999999999987 223 3889999999999999999 999999877
No 231
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.14 E-value=1.1e-10 Score=120.87 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=68.1
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVIT 1287 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~t 1287 (1491)
.++|+||++. +..-++||++||+||+.+|++++|||||++||+.+. .... +.++|++|
T Consensus 62 ~i~~~~q~~~------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivs 129 (177)
T cd03222 62 TPVYKPQYID------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129 (177)
T ss_pred EEEEEcccCC------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4788888765 334479999999999999999999999999999987 2234 48999999
Q ss_pred cCHHHHHHHhccccceEEEEecCCCcc
Q psy9513 1288 HDEEFIENLTAIDRAYVVRIVRDHKGL 1314 (1491)
Q Consensus 1288 hd~~~~~~~~~~~~~~~~~l~~~~~~~ 1314 (1491)
||.+++..+| |+++.+.+++...
T Consensus 130 H~~~~~~~~~----d~i~~l~~~~~~~ 152 (177)
T cd03222 130 HDLAVLDYLS----DRIHVFEGEPGVY 152 (177)
T ss_pred CCHHHHHHhC----CEEEEEcCCCccc
Confidence 9999999999 9999998775543
No 232
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=1.2e-10 Score=130.93 Aligned_cols=89 Identities=20% Similarity=0.334 Sum_probs=75.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH---------------H-----------------H----------hhhHHHHHHHhh
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV---------------R-----------------I----------VRDHKALAETFS 1255 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~---------------~-----------------l----------~~~~~~~a~~~~ 1255 (1491)
.++|+||++.++++++..+++.+. . + ++||++||+||+
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA 165 (253)
T ss_pred ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence 589999999998888877664210 0 0 579999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|.+|
T Consensus 166 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 224 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS----DYVAFLYLG 224 (253)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhC----CEEEEEECC
Confidence 99999999999999999988 1123689999999999999999 999999887
No 233
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.14 E-value=8.7e-11 Score=131.64 Aligned_cols=87 Identities=18% Similarity=0.167 Sum_probs=72.8
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH-------------------------------------H---hhhHHHHHHHhhcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR-------------------------------------I---VRDHKALAETFSRN 1257 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~-------------------------------------l---~~~~~~~a~~~~~~ 1257 (1491)
.++||||++.++++ +..+|+.++. + ++||++|||||+.+
T Consensus 78 ~i~~v~q~~~lf~~-tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 78 AFGVIPQKVFIFSG-TFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred hEEEECCCcccchh-hHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 59999999998875 7777663210 1 68999999999999
Q ss_pred CCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1258 CGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1258 ~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|+|||||++||+.+. ....+.|||+|||+++++.. | |++++|++|
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~----dri~vl~~G 212 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-C----QRFLVIEEN 212 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-C----CEEEEecCC
Confidence 999999999999999987 12347899999999998875 8 999999877
No 234
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.14 E-value=5.4e-11 Score=138.50 Aligned_cols=94 Identities=20% Similarity=0.353 Sum_probs=82.3
Q ss_pred cceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC-CcHHH
Q psy9513 5 DQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-KDEAS 78 (1491)
Q Consensus 5 ~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-~~~~~ 78 (1491)
..|+++|+ |+|++..+ .+++|++. +++++|.||||||||++.| +|.++|++ |.++++|....- .....
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiL----sGv~~p~~--G~I~~~G~~~~~~sp~~A 80 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKIL----SGVYPPDS--GEILIDGKPVAFSSPRDA 80 (500)
T ss_pred ceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHH----hCcccCCC--ceEEECCEEccCCCHHHH
Confidence 35889999 89999887 99999986 9999999999999999999 99999999 999999987743 44456
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
...|++.+ |+.++.+..+|.+++-+.
T Consensus 81 ~~~GI~~V~QEl~L~p~LsVaeNifLg 107 (500)
T COG1129 81 LAAGIATVHQELSLVPNLSVAENIFLG 107 (500)
T ss_pred HhCCcEEEeechhccCCccHHHHhhcc
Confidence 77899999 999999999998887653
No 235
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.14 E-value=1.3e-10 Score=131.96 Aligned_cols=122 Identities=15% Similarity=0.186 Sum_probs=88.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ .| .+.+|+..+.......+ ...+||+||++. ++..+++.+++.+.
T Consensus 41 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-------------~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~ 107 (277)
T PRK13652 41 AGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREV-------------RKFVGLVFQNPDDQIFSPTVEQDIAFGPINL 107 (277)
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-------------HhheEEEecCcccccccccHHHHHHhHHHHc
Confidence 456777777776 22 25666665543211111 135899999974 33356666655210
Q ss_pred ------------H------H--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1242 ------------R------I--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1242 ------------~------l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
. + ++||++||+||+.+|++|||||||+|||+.+. ... .
T Consensus 108 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~ 187 (277)
T PRK13652 108 GLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY 187 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 0 68999999999999999999999999999987 223 3
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||++|||++++..+| |++++|.+|
T Consensus 188 g~tvli~tH~~~~~~~~~----drv~~l~~G 214 (277)
T PRK13652 188 GMTVIFSTHQLDLVPEMA----DYIYVMDKG 214 (277)
T ss_pred CCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 889999999999999999 999999887
No 236
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=1.5e-10 Score=131.27 Aligned_cols=124 Identities=16% Similarity=0.159 Sum_probs=89.0
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ . +++.+|+..+..... .. .. ....++|+||++. .+..+++.+++.+.
T Consensus 39 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~-~~-----~~-----~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~ 107 (275)
T PRK13639 39 AGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK-SL-----LE-----VRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL 107 (275)
T ss_pred CCHHHHHHHHhCCCCCCccEEEECCEECccccc-hH-----HH-----HHhheEEEeeChhhhhccccHHHHHHHHHHHc
Confidence 457777777776 2 236666665521100 00 00 1235999999973 33345666665221
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|
T Consensus 108 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ 187 (275)
T PRK13639 108 GLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG 187 (275)
T ss_pred CCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCC
Confidence 00 68999999999999999999999999999988 23358
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||++|||.+++..+| |+++.|.+|
T Consensus 188 ~til~vtH~~~~~~~~~----d~i~~l~~G 213 (275)
T PRK13639 188 ITIIISTHDVDLVPVYA----DKVYVMSDG 213 (275)
T ss_pred CEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999877
No 237
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.13 E-value=1.2e-10 Score=126.69 Aligned_cols=122 Identities=19% Similarity=0.212 Sum_probs=87.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++.++........ .. .....++|++|++.++++++..+++.+.
T Consensus 35 sGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-----~~----~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~ 105 (206)
T TIGR03608 35 SGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKA-----SK----FRREKLGYLFQNFALIENETVEENLDLGLKYKK 105 (206)
T ss_pred CCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhH-----HH----HHHhCeeEEecchhhccCCcHHHHHHHHHHhcC
Confidence 356777777776 32 25666665432221000 00 0123589999999999999988775321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 106 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~ 185 (206)
T TIGR03608 106 LSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185 (206)
T ss_pred CCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 00 68999999999999999999999999999998 233488
Q ss_pred eEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
++|++||+.+++ .+| |+++.|
T Consensus 186 tii~~sh~~~~~-~~~----d~i~~l 206 (206)
T TIGR03608 186 TIIIVTHDPEVA-KQA----DRVIEL 206 (206)
T ss_pred EEEEEeCCHHHH-hhc----CEEEeC
Confidence 999999999976 468 887653
No 238
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.1e-11 Score=139.54 Aligned_cols=62 Identities=27% Similarity=0.325 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||+++||||..+|++++|||||+|||.++- ...++.|+|+|||++..+... |++++|++|
T Consensus 461 Q~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~-----D~I~vld~G 530 (559)
T COG4988 461 QAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADA-----DRIVVLDNG 530 (559)
T ss_pred HHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcC-----CEEEEecCC
Confidence 68999999999999999999999999999987 345679999999999887764 999999988
No 239
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.13 E-value=1.4e-10 Score=130.48 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|+|++|||.+++..+| |++++|.+|
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~----d~i~~l~~G 225 (254)
T PRK14273 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRIS----DRTAFFLNG 225 (254)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1234689999999999999999 999999877
No 240
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.13 E-value=1.6e-10 Score=127.74 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|||++|||.+++..+| |+++.|.+|
T Consensus 130 ~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 202 (230)
T TIGR02770 130 MLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIA----DEVAVMDDG 202 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 223 3789999999999999999 999999877
No 241
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.13 E-value=1.4e-10 Score=129.88 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=56.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|++|
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 219 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARIS----DRTAFFYDG 219 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 1123589999999999999999 999999887
No 242
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=7.4e-11 Score=136.84 Aligned_cols=98 Identities=14% Similarity=0.238 Sum_probs=81.3
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~ 75 (1491)
|.....|.++|+ ++|++..+ .+++|++. +++|+||||||||||+++| .|..+|.+ |.|+++|..+....
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~I----aGl~~p~~--G~I~~~g~~i~~~~ 74 (351)
T PRK11432 1 MTQKNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLV----AGLEKPTE--GQIFIDGEDVTHRS 74 (351)
T ss_pred CCCCcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----HCCCCCCc--eEEEECCEECCCCC
Confidence 444456899999 69986555 78888875 9999999999999999999 99999998 99999997764322
Q ss_pred HHHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 76 EASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...++++|+ |++.+++..++..+|.+.+.
T Consensus 75 --~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 75 --IQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred --HHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 234679999 99999999999999988764
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.13 E-value=1.2e-10 Score=130.05 Aligned_cols=89 Identities=13% Similarity=0.155 Sum_probs=74.3
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH------------HH-----------------------hhhHHHHHHHhhc------
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV------------RI-----------------------VRDHKALAETFSR------ 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~------------~l-----------------------~~~~~~~a~~~~~------ 1256 (1491)
.++|+||++.++..+++.+++.++ .+ ++||++||+||+.
T Consensus 70 ~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~ 149 (248)
T PRK03695 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDIN 149 (248)
T ss_pred heEEecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccC
Confidence 379999998887777777664221 00 6899999999997
Q ss_pred -CCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 -NCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 -~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||+|||+.+. ....|.|||++|||.+++..+| |++++|.+|
T Consensus 150 p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~----d~i~~l~~G 209 (248)
T PRK03695 150 PAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHA----DRVWLLKQG 209 (248)
T ss_pred CCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 6799999999999999988 2345889999999999999999 999999887
No 244
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.13 E-value=1.6e-10 Score=130.54 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ... .|.|||+||||.+++..+| |+++.|.+|
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~----d~i~~l~~G 226 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHIS----DQVLVMHQG 226 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 78999999999999999999999999999987 223 3889999999999999999 999999876
No 245
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.1e-10 Score=136.05 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=97.3
Q ss_pred cccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHH----
Q psy9513 1173 RRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRI---- 1243 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l---- 1243 (1491)
.+||=..|+++ .|+ +.+|++...-..- ..-.+..+++|+|+..+++.|++.+|++..+.
T Consensus 46 GKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp------------~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~ 113 (500)
T COG1129 46 GKSTLMKILSGVYPPDSGEILIDGKPVAFSSP------------RDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR 113 (500)
T ss_pred CHHHHHHHHhCcccCCCceEEECCEEccCCCH------------HHHHhCCcEEEeechhccCCccHHHHhhcccccccC
Confidence 46777777766 332 6666654432211 01126789999999999999999999854211
Q ss_pred ------------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh
Q psy9513 1244 ------------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ 1278 (1491)
Q Consensus 1244 ------------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~ 1278 (1491)
+||.|+||+|+..++++|||||||++|+..-. +..
T Consensus 114 ~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~ 193 (500)
T COG1129 114 FGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA 193 (500)
T ss_pred CCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999998776 667
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.++|+|||.++++..+| |++.+|.+|
T Consensus 194 ~Gv~ii~ISHrl~Ei~~i~----DritVlRDG 221 (500)
T COG1129 194 QGVAIIYISHRLDEVFEIA----DRITVLRDG 221 (500)
T ss_pred CCCEEEEEcCcHHHHHHhc----CEEEEEeCC
Confidence 8999999999999999999 999999888
No 246
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.7e-10 Score=131.63 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||.+++..+| |+++.|.+|
T Consensus 150 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 221 (280)
T PRK13649 150 QMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYA----DFVYVLEKG 221 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 2335889999999999999999 999999877
No 247
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.12 E-value=1.5e-10 Score=130.32 Aligned_cols=122 Identities=16% Similarity=0.221 Sum_probs=91.5
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|+..+.......+ | ..++|+||++.+++.+++.+++.+.
T Consensus 38 sGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~--------~-----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~ 104 (256)
T TIGR03873 38 SGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR--------A-----RRVALVEQDSDTAVPLTVRDVVALGRIPHR 104 (256)
T ss_pred CCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHH--------h-----hheEEecccCccCCCCCHHHHHHhcchhhh
Confidence 356777777776 22 25666665544322111 1 1488999998877777777765210
Q ss_pred ------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 ------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
.+ ++||++||+||+.+|++++|||||+|||+.+. ..
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 184 (256)
T TIGR03873 105 SLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA 184 (256)
T ss_pred hhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH
Confidence 01 68999999999999999999999999999988 23
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|||++|||++++..+| |+++.|.+|
T Consensus 185 ~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 213 (256)
T TIGR03873 185 ATGVTVVAALHDLNLAASYC----DHVVVLDGG 213 (256)
T ss_pred hcCCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 34789999999999999999 999999877
No 248
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.12 E-value=1.5e-10 Score=129.55 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHH-hccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENL-TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~-~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||++++..+ | |+++.|.+|
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~----d~i~~l~~G 221 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP----DYVHVLLDG 221 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcC----CeEEEEeCC
Confidence 68999999999999999999999999999988 234578999999999999998 8 999999876
No 249
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.6e-10 Score=129.87 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||++|||.+++..+| |+++.|.+|
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~----d~v~~l~~G 224 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVS----DVTAFFYMG 224 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1134789999999999999999 999999887
No 250
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=1.7e-10 Score=130.71 Aligned_cols=63 Identities=22% Similarity=0.314 Sum_probs=58.0
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||.+++..+| |+++.|.+|
T Consensus 141 ~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~----d~i~~l~~G 212 (271)
T PRK13638 141 QKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEIS----DAVYVLRQG 212 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 2335889999999999999999 999999877
No 251
>PRK14079 recF recombination protein F; Provisional
Probab=99.12 E-value=6.3e-10 Score=129.42 Aligned_cols=52 Identities=38% Similarity=0.568 Sum_probs=45.7
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
|.+..|.+.||++|. ...++|+.++++|+||||||||||++||.|+++|..+
T Consensus 1 M~i~~l~l~nfRn~~---~~~l~f~~g~nvi~G~NGsGKT~lLeAI~~~~~gs~r 52 (349)
T PRK14079 1 MRLLSLRQLNYRNLA---PPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGELP 52 (349)
T ss_pred CEEEEEEEeccCCcc---cceEEeCCCeEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 678899999999996 3468999999999999999999999999999987443
No 252
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.7e-10 Score=129.59 Aligned_cols=89 Identities=13% Similarity=0.279 Sum_probs=74.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H------------H-------------------------H---hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V------------R-------------------------I---VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~------------~-------------------------l---~~~~~~~a~~~~~ 1256 (1491)
.++|+||++.+++.++..+++.+ . . + ++||++||+||+.
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 165 (252)
T PRK14256 86 RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV 165 (252)
T ss_pred cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc
Confidence 58999999988888777665421 0 0 0 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||+|||+.+. ....+.|||+||||++++..+| |+++.|..|
T Consensus 166 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~~G 223 (252)
T PRK14256 166 KPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVS----DYTAFFYMG 223 (252)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhC----CEEEEEECC
Confidence 9999999999999999987 1123689999999999999999 999999876
No 253
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.8e-10 Score=129.57 Aligned_cols=63 Identities=17% Similarity=0.293 Sum_probs=56.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|.+|
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~----d~i~~l~~G 223 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS----DRTGFFLDG 223 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhC----CEEEEEECC
Confidence 57999999999999999999999999999988 1123689999999999999999 999999887
No 254
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.12 E-value=1.8e-10 Score=128.76 Aligned_cols=63 Identities=21% Similarity=0.317 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |++++|.+|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~----d~i~~l~~G 217 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVA----DYTAFFHLG 217 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhC----cEEEEEECC
Confidence 68999999999999999999999999999988 1124889999999999999999 999999877
No 255
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.11 E-value=1.3e-10 Score=144.14 Aligned_cols=123 Identities=15% Similarity=0.164 Sum_probs=93.3
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH------
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV------ 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~------ 1240 (1491)
..+||=++++++ .|+ +.+++..+........ + ...++|+||++.+++.+++.+++.+
T Consensus 41 sGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~--------~----~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 108 (501)
T PRK10762 41 AGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSS--------Q----EAGIGIIHQELNLIPQLTIAENIFLGREFVN 108 (501)
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH--------H----hCCEEEEEcchhccCCCcHHHHhhhcccccc
Confidence 467788888776 332 5566655432211000 0 1259999999999998888876521
Q ss_pred ------H-----HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1241 ------V-----RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1241 ------~-----~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
+ .+ ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 188 (501)
T PRK10762 109 RFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK 188 (501)
T ss_pred ccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH
Confidence 0 00 68999999999999999999999999999988 23
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|||+||||.+++..+| |+++.|.+|
T Consensus 189 ~~~~tvii~sHd~~~~~~~~----d~i~~l~~G 217 (501)
T PRK10762 189 SQGRGIVYISHRLKEIFEIC----DDVTVFRDG 217 (501)
T ss_pred HCCCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 45789999999999999999 999999877
No 256
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.11 E-value=8e-11 Score=134.91 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=78.8
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~ 75 (1491)
||. ..|.++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+...
T Consensus 3 ~~~-~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l----~Gl~~p~~--G~v~i~G~~~~~~- 74 (306)
T PRK13537 3 MSV-APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML----LGLTHPDA--GSISLCGEPVPSR- 74 (306)
T ss_pred CCC-ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEecccc-
Confidence 443 35899999 69987666 88999875 9999999999999999999 99999998 9999998776332
Q ss_pred HHHhhcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 76 EASASSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
....+..++|+ |++.+.+..++..++.+
T Consensus 75 ~~~~~~~ig~v~q~~~~~~~~tv~e~l~~ 103 (306)
T PRK13537 75 ARHARQRVGVVPQFDNLDPDFTVRENLLV 103 (306)
T ss_pred hHHHHhcEEEEeccCcCCCCCcHHHHHHH
Confidence 23356789999 99988888899888875
No 257
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=1.9e-10 Score=128.97 Aligned_cols=63 Identities=14% Similarity=0.312 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~----d~v~~l~~G 221 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVS----DKTAFFYMG 221 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1234789999999999999999 999999877
No 258
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=2.1e-10 Score=131.30 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|||+||||++++..+| |++++|.+|
T Consensus 155 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~----d~i~~l~~G 227 (289)
T PRK13645 155 QKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIA----DEVIVMHEG 227 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 222 4889999999999999999 999999877
No 259
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.2e-10 Score=144.77 Aligned_cols=123 Identities=15% Similarity=0.258 Sum_probs=93.2
Q ss_pred CcccceeEEEEe--cc----c-cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH---
Q psy9513 1172 KRRTYNYRVVQK--KN----G-IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV--- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~--- 1241 (1491)
..+||=++++++ .| | +.+++..+........ + ...+||+||++.+++.+++.+++.++
T Consensus 42 sGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~--------~----~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 109 (506)
T PRK13549 42 AGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDT--------E----RAGIAIIHQELALVKELSVLENIFLGNEI 109 (506)
T ss_pred CCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHH--------H----HCCeEEEEeccccCCCCcHHHHhhhcccc
Confidence 467888888877 43 1 4455555533221000 0 13599999999998888887764210
Q ss_pred -------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H
Q psy9513 1242 -------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S 1276 (1491)
Q Consensus 1242 -------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~ 1276 (1491)
.+ ++||++||+||+.+|++|||||||+|||+.+. .
T Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 189 (506)
T PRK13549 110 TPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189 (506)
T ss_pred cccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999988 3
Q ss_pred hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
...|.+||+||||++++..+| |++++|.+|
T Consensus 190 ~~~~~tvi~~tH~~~~~~~~~----d~v~~l~~G 219 (506)
T PRK13549 190 KAHGIACIYISHKLNEVKAIS----DTICVIRDG 219 (506)
T ss_pred HHCCCEEEEEeCcHHHHHHhc----CEEEEEECC
Confidence 345889999999999999999 999999877
No 260
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.11 E-value=2.2e-10 Score=125.71 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=73.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH--------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV--------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~--------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.++|+||++.+++.++..+++.+. .+ ++||++||++|+.+|++
T Consensus 83 ~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~i 162 (220)
T TIGR02982 83 NIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKL 162 (220)
T ss_pred heEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 599999999999888877765211 01 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||+|||+.+. ... .+.|+|++|||.++. .+| |++++|.+|
T Consensus 163 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~----d~v~~l~~g 217 (220)
T TIGR02982 163 VLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVA----DRIVHMEDG 217 (220)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhC----CEEEEEECC
Confidence 999999999999997 222 489999999999864 688 999999766
No 261
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=9.3e-11 Score=136.54 Aligned_cols=93 Identities=12% Similarity=0.283 Sum_probs=78.1
Q ss_pred ceeeecc-ccc-CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNF-PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~-~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|.++|+ ++| ++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... ..
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~i----aGl~~p~~--G~I~~~g~~i~~~~--~~ 74 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMV----AGLERITS--GEIWIGGRVVNELE--PA 74 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHH----HCCCCCCc--eEEEECCEECCCCC--HH
Confidence 3889999 689 65555 78888875 9999999999999999999 99999998 99999997764322 12
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.++++|+ |++.+++..++..+|.+.+.
T Consensus 75 ~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 75 DRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred HCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 4689999 99999999999999988764
No 262
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=1.8e-10 Score=131.06 Aligned_cols=121 Identities=17% Similarity=0.153 Sum_probs=89.2
Q ss_pred CcccceeEEEEe--cc------ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH-
Q psy9513 1172 KRRTYNYRVVQK--KN------GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~- 1241 (1491)
..+||=++++++ .| ++.+|+..+.......+ ..++||+||++. +++.+++.+++.+.
T Consensus 44 aGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~-------------~~~ig~v~q~~~~~~~~~tv~enl~~~~ 110 (282)
T PRK13640 44 SGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI-------------REKVGIVFQNPDNQFVGATVGDDVAFGL 110 (282)
T ss_pred CcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH-------------HhheEEEEECHHHhhccCCHHHHHHhhH
Confidence 356777777766 22 35566665543211111 136899999985 67777887776321
Q ss_pred H------------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 R------------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 ~------------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~ 190 (282)
T PRK13640 111 ENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLK 190 (282)
T ss_pred HhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 0 0 68999999999999999999999999999987 22
Q ss_pred h-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 Q-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. .|.|||++|||++++. +| |++++|.+|
T Consensus 191 ~~~g~tvli~tH~~~~~~-~~----d~i~~l~~G 219 (282)
T PRK13640 191 KKNNLTVISITHDIDEAN-MA----DQVLVLDDG 219 (282)
T ss_pred HhcCCEEEEEecCHHHHH-hC----CEEEEEECC
Confidence 3 3889999999999985 68 999999877
No 263
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2e-10 Score=128.92 Aligned_cols=63 Identities=19% Similarity=0.383 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|++|
T Consensus 152 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~----d~v~~l~~G 222 (251)
T PRK14270 152 QQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVS----DYTAFFLMG 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhc----CEEEEEECC
Confidence 57999999999999999999999999999987 1123689999999999999999 999999887
No 264
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.11 E-value=2e-10 Score=129.34 Aligned_cols=63 Identities=16% Similarity=0.314 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|++|
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 231 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCS----DYTAFMYLG 231 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 1234689999999999999999 999999877
No 265
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.11 E-value=1.4e-10 Score=125.40 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=72.0
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH----------H---H--------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV----------R---I--------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~----------~---l--------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
+++|++|++.|++.+++.+++.+. . + ++||++||+||+.+|++|+||
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 154 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD 154 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 589999999999888888775221 0 0 589999999999999999999
Q ss_pred CCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1265 EPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
|||++||+.+. ....+.|+|++|||.+++..+. ++++++
T Consensus 155 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~----~~~~~~ 202 (204)
T PRK13538 155 EPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK----VRKLRL 202 (204)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC----ceEEec
Confidence 99999999987 2345789999999999998876 777765
No 266
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.11 E-value=1.4e-10 Score=125.99 Aligned_cols=87 Identities=20% Similarity=0.261 Sum_probs=72.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH------HH----------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV------RI----------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA 1275 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~------~l----------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~ 1275 (1491)
+++|+||++.|+++ +..+++.++ .+ ++||++|||||+.+|++++|||||+|||+.+.
T Consensus 83 ~i~~v~q~~~~~~~-tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~ 161 (207)
T cd03369 83 SLTIIPQDPTLFSG-TIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATD 161 (207)
T ss_pred hEEEEecCCcccCc-cHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 69999999988864 777765211 10 68999999999999999999999999999987
Q ss_pred --------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 --------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 --------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|+|++|||.+++.. | |+++.|++|
T Consensus 162 ~~l~~~l~~~~~~~tiii~th~~~~~~~-~----d~v~~l~~g 199 (207)
T cd03369 162 ALIQKTIREEFTNSTILTIAHRLRTIID-Y----DKILVMDAG 199 (207)
T ss_pred HHHHHHHHHhcCCCEEEEEeCCHHHHhh-C----CEEEEEECC
Confidence 11347899999999999875 8 999999876
No 267
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=9.8e-11 Score=130.02 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=73.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---HH
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---AS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~~ 78 (1491)
|+++|+ .+|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.|.++|..+..... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~~~~~~~~~~~~ 74 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLI----VGLLRPDS--GEVLIDGEDISGLSEAELYR 74 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEccccChhhHHH
Confidence 457788 58876555 88888875 9999999999999999999 99999998 999998876633211 23
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++..++..++.+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 102 (235)
T cd03261 75 LRRRMGMLFQSGALFDSLTVFENVAFPL 102 (235)
T ss_pred HhcceEEEccCcccCCCCcHHHHHHHHH
Confidence 45678999 9888777788888887653
No 268
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=2.2e-10 Score=123.33 Aligned_cols=90 Identities=18% Similarity=0.217 Sum_probs=74.4
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHHH----------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVVR----------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-------- 1275 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~~----------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-------- 1275 (1491)
..++|+||++.+++.+++.+++.++. + ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~ 162 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHH
Confidence 36999999999999999999874321 1 79999999999999999999999999999988
Q ss_pred -Hhhc-CceEEEE-ccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -SDQK-NFQLIVI-THDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -~~~~-~~~~i~~-thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.... +.++|++ +|+.+.+..+| |+++.|.+|
T Consensus 163 ~~~~~~~~t~ii~~~h~~~~~~~~~----d~i~~l~~G 196 (202)
T cd03233 163 TMADVLKTTTFVSLYQASDEIYDLF----DKVLVLYEG 196 (202)
T ss_pred HHHHhCCCEEEEEEcCCHHHHHHhC----CeEEEEECC
Confidence 2233 5565554 56678888899 999999887
No 269
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.2e-10 Score=128.56 Aligned_cols=63 Identities=16% Similarity=0.350 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|++|
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----d~v~~l~~G 221 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRIS----DKTAFFLNG 221 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1134789999999999999999 999999887
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=146.10 Aligned_cols=89 Identities=20% Similarity=0.304 Sum_probs=75.0
Q ss_pred eEEEEccch--hhhhhhhhHHHHhH----H----------H----------------H----------hhhHHHHHHHhh
Q psy9513 1218 QLIVITHDE--EFIENLTAIDRAYV----V----------R----------------I----------VRDHKALAETFS 1255 (1491)
Q Consensus 1218 ~l~~i~~~~--~~~~~L~~~~~~~~----~----------~----------------l----------~~~~~~~a~~~~ 1255 (1491)
.+|||||++ .|++.+++.+++.+ . + + |+||++||+||+
T Consensus 105 ~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~ 184 (623)
T PRK10261 105 DMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184 (623)
T ss_pred CEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 699999998 57777777666421 0 0 0 689999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|||||||++||+.+. ... .|.|||+||||++++..+| |++++|.+|
T Consensus 185 ~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~a----dri~vl~~G 245 (623)
T PRK10261 185 CRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIA----DRVLVMYQG 245 (623)
T ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC----CEEEEeeCC
Confidence 99999999999999999996 233 3889999999999999999 999999877
No 271
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.4e-10 Score=128.01 Aligned_cols=90 Identities=14% Similarity=0.321 Sum_probs=75.1
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH--------H-----------------------H----------hhhHHHHHHHhh
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV--------R-----------------------I----------VRDHKALAETFS 1255 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~--------~-----------------------l----------~~~~~~~a~~~~ 1255 (1491)
..++|+||++.++++++..+++.++ . + ++||++||+||+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 3689999999998888776654210 0 0 579999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|+.|
T Consensus 170 ~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~----d~v~~l~~g 228 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVA----DYVAFLYNG 228 (257)
T ss_pred cCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999987 1123689999999999999999 999999876
No 272
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.1e-10 Score=129.49 Aligned_cols=62 Identities=19% Similarity=0.322 Sum_probs=56.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||++|||.+++..+| |++++|+.
T Consensus 159 ~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~----d~i~~l~~ 228 (269)
T PRK14259 159 QQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS----DMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEec
Confidence 68999999999999999999999999999987 1134689999999999999999 99999986
No 273
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.5e-10 Score=128.44 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=74.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H-----------------------------H--------H---hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V-----------------------------R--------I---VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~-----------------------------~--------l---~~~~~~~a~~~~~ 1256 (1491)
.++|+||++.+++.++..+++.+ . . + ++||++||+||+.
T Consensus 86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14272 86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV 165 (252)
T ss_pred eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 58999999988887776665421 0 0 0 5799999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|.+|
T Consensus 166 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 223 (252)
T PRK14272 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVS----DTTSFFLVG 223 (252)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999988 1124689999999999999999 999999887
No 274
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.4e-10 Score=129.25 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|+|+||||++++..+| |+++.|.+|
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~----d~i~~l~~G 242 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARIS----DKTAFFLNG 242 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123689999999999999999 999999877
No 275
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.10 E-value=2.4e-10 Score=129.46 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|||++|||++++..+| |+++.|.+|
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~----d~v~~l~~G 239 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVS----DRTAFFLNG 239 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123689999999999999999 999999877
No 276
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.10 E-value=1.2e-10 Score=135.49 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=78.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+.... ...
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~~~~~~--~~~ 75 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRII----AGLERQTA--GTIYQGGRDITRLP--PQK 75 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH----HCCCCCCc--eEEEECCEECCCCC--HHH
Confidence 4889999 69986555 78888875 9999999999999999999 99999998 99999997764321 235
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 76 r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 76 RDYGIVFQSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred CCEEEEeCCcccCCCCcHHHHHHHHHH
Confidence 679999 99999999999999988764
No 277
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=2.4e-10 Score=129.71 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=89.0
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH-H--
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV-R-- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~-~-- 1242 (1491)
..+||=++++++ . +++.+|+..+.......+ ...+||+||++. ++..+++.+++.+. .
T Consensus 44 sGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~-------------~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~ 110 (277)
T PRK13642 44 SGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNL-------------RRKIGMVFQNPDNQFVGATVEDDVAFGMENQ 110 (277)
T ss_pred CcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHH-------------hcceEEEEECHHHhhccCCHHHHHHhhHHHc
Confidence 356666666665 2 225666665543211111 136999999984 67777877765321 0
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
+ ++||++||+||+.+|++|||||||+|||+.+. ... .
T Consensus 111 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~ 190 (277)
T PRK13642 111 GIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190 (277)
T ss_pred CCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 58999999999999999999999999999988 233 3
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|++|||++++. .| |+++.|+.|
T Consensus 191 g~tiil~sH~~~~~~-~~----d~i~~l~~G 216 (277)
T PRK13642 191 QLTVLSITHDLDEAA-SS----DRILVMKAG 216 (277)
T ss_pred CCEEEEEeCCHHHHH-hC----CEEEEEECC
Confidence 899999999999986 58 999999877
No 278
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.10 E-value=1.9e-10 Score=143.53 Aligned_cols=89 Identities=20% Similarity=0.342 Sum_probs=75.4
Q ss_pred eEEEEccc-hhhhhhhhhHHHHhH-H------------HH-----------------------hhhHHHHHHHhhcCCCe
Q psy9513 1218 QLIVITHD-EEFIENLTAIDRAYV-V------------RI-----------------------VRDHKALAETFSRNCGI 1260 (1491)
Q Consensus 1218 ~l~~i~~~-~~~~~~L~~~~~~~~-~------------~l-----------------------~~~~~~~a~~~~~~~~~ 1260 (1491)
.++|+||+ +.+++.+++.+++.+ . ++ ++||++||+||+.+|++
T Consensus 110 ~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~l 189 (520)
T TIGR03269 110 RIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFL 189 (520)
T ss_pred cEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 58999997 677787887776522 1 00 68999999999999999
Q ss_pred eEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1261 FALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1261 l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|||||++||+.+. . ...|.|||+||||.+++..+| |+++.|.+|
T Consensus 190 llLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~----d~i~~l~~G 245 (520)
T TIGR03269 190 FLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLS----DKAIWLENG 245 (520)
T ss_pred EEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc----CEEEEEeCC
Confidence 999999999999998 2 234889999999999999999 999999876
No 279
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=143.21 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=92.7
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.++...+....... .+ ..+++|+||++.+++++++.+++.+.
T Consensus 41 sGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~----~~--------~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 108 (501)
T PRK11288 41 AGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTA----AL--------AAGVAIIYQELHLVPEMTVAENLYLGQLPHK 108 (501)
T ss_pred CCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHH----HH--------hCCEEEEEechhccCCCCHHHHHHhcccccc
Confidence 457777777776 23 2555555443211100 00 13699999999999888887765210
Q ss_pred -----------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh
Q psy9513 1242 -----------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ 1278 (1491)
Q Consensus 1242 -----------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~ 1278 (1491)
++ ++||++||+||+.+|++|||||||+|||+.+. ...
T Consensus 109 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~ 188 (501)
T PRK11288 109 GGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 00 68999999999999999999999999999988 234
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|||+||||++++..+| |+++.|.+|
T Consensus 189 ~g~tiiiitHd~~~~~~~~----d~i~~l~~G 216 (501)
T PRK11288 189 EGRVILYVSHRMEEIFALC----DAITVFKDG 216 (501)
T ss_pred CCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 5889999999999999999 999999877
No 280
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.6e-10 Score=131.44 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++|||||+.+|++|+|||||+|||+.+. ....+.|+|+|||+++++..+| |++++|..|
T Consensus 230 qkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~----Driivl~~G 300 (329)
T PRK14257 230 QQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS----DETVFFYQG 300 (329)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1234689999999999999999 999999887
No 281
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.7e-10 Score=127.79 Aligned_cols=63 Identities=14% Similarity=0.304 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~----d~i~~l~~G 222 (251)
T PRK14249 152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARAS----DWTGFLLTG 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhC----CEEEEEeCC
Confidence 68999999999999999999999999999988 1134789999999999999999 999999877
No 282
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.09 E-value=2.5e-10 Score=125.20 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=56.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|+|++|||.+++..+| |+++++ +|
T Consensus 118 ~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~----d~i~~l-~G 188 (223)
T TIGR03771 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATC----DRVVLL-NG 188 (223)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----CEEEEE-CC
Confidence 68999999999999999999999999999998 2345889999999999999999 999988 54
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2e-10 Score=142.95 Aligned_cols=123 Identities=16% Similarity=0.256 Sum_probs=94.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++.++........ ...+++|+||++.+++.+++.+++.+.
T Consensus 42 sGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~------------~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~ 109 (510)
T PRK09700 42 AGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA------------AQLGIGIIYQELSVIDELTVLENLYIGRHLTK 109 (510)
T ss_pred CCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHH------------HHCCeEEEeecccccCCCcHHHHhhhcccccc
Confidence 467888888877 33 25566665543322111 013599999999888888877764210
Q ss_pred ---------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------
Q psy9513 1242 ---------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-------- 1275 (1491)
Q Consensus 1242 ---------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-------- 1275 (1491)
++ ++||++||+||+.+|++|||||||+|||+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 189 (510)
T PRK09700 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189 (510)
T ss_pred ccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999998
Q ss_pred -HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|||+||||++++..+| |++++|.+|
T Consensus 190 ~l~~~g~tiiivsHd~~~~~~~~----d~v~~l~~G 221 (510)
T PRK09700 190 QLRKEGTAIVYISHKLAEIRRIC----DRYTVMKDG 221 (510)
T ss_pred HHHhCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3345889999999999999999 999999877
No 284
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.09 E-value=2.7e-10 Score=128.27 Aligned_cols=63 Identities=17% Similarity=0.307 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|+|+||||.+++..+| |+++.|.+|
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~----d~i~~l~~g 228 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA----HRLLVMKQG 228 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 68999999999999999999999999999987 223 3889999999999999999 999999877
No 285
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.09 E-value=1.7e-10 Score=124.36 Aligned_cols=86 Identities=20% Similarity=0.267 Sum_probs=72.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------RI-----------------------VRDHKALAETFSRNCGIFALDEPT 1267 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~ 1267 (1491)
+++|+||++.+++.++..+++.++ .+ ++||++||+||+.+|++|+|||||
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 153 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPT 153 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 689999999998888888875221 00 689999999999999999999999
Q ss_pred CCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1268 TNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1268 ~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
+|||+.+. ....|.|+|++|||......+| ++++++
T Consensus 154 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~----~~~~~~ 198 (201)
T cd03231 154 TALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAG----ARELDL 198 (201)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhcc----ceeEec
Confidence 99999998 2345889999999988888888 887766
No 286
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=3e-10 Score=129.35 Aligned_cols=63 Identities=22% Similarity=0.394 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.+||++|||.+++..+| |+++.|.+|
T Consensus 187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~----d~i~~L~~G 257 (286)
T PRK14275 187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVS----DYTMFFYEG 257 (286)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 78999999999999999999999999999988 1123679999999999999999 999999876
No 287
>PRK00064 recF recombination protein F; Reviewed
Probab=99.09 E-value=8.2e-10 Score=129.30 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=91.4
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|.+|.|.||++|. ...++|++++++|+||||||||||++||.|+++|...... .+..+ +
T Consensus 1 M~i~~l~i~nfr~~~---~~~l~~~~~~~~i~G~NgsGKT~lleai~~l~~~~s~r~~-------~~~~l-------i-- 61 (361)
T PRK00064 1 MYLTRLSLTDFRNYE---ELDLELSPGVNVLVGENGQGKTNLLEAIYLLAPGRSHRTA-------RDKEL-------I-- 61 (361)
T ss_pred CEEEEEEEeCCCccc---ceEEEecCCeEEEECCCCCCHHHHHHHHHHhCCCCCccCC-------ChhHH-------H--
Confidence 557899999999996 3578888889999999999999999999887755321111 00011 0
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHHh
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEM 161 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~i 161 (1491)
......+.|...|.+ ++..+.|.+.+... |+. .+.+ ||.... ... ++-
T Consensus 62 -----------~~g~~~~~v~~~~~~-~~~~~~i~~~~~~~---~~~--------~~~i---ng~~~~-~~~--~l~--- 109 (361)
T PRK00064 62 -----------RFGAEAAVIHGRVEK-GGRELPLGLEIDKK---GGR--------KVRI---NGEPQR-KLA--ELA--- 109 (361)
T ss_pred -----------hcCCCcEEEEEEEEe-CCcEEEEEEEEEcC---Cce--------EEEE---CCcccc-CHH--HHh---
Confidence 111112334555642 34456676665422 211 1233 364321 011 111
Q ss_pred HhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhh--hhHHHHHHHHHH
Q psy9513 162 CNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDA--TKYNKALESIKI 215 (1491)
Q Consensus 162 ~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~--~~~~~~~~~lk~ 215 (1491)
.++.-|+|+||...... ..|+.++.+||...+. ..|...+....+
T Consensus 110 --------~~~~~v~~~p~~~~l~~-~~p~~RR~fLD~~~~~~~~~y~~~~~~y~k 156 (361)
T PRK00064 110 --------GLLNVVLFTPEDLRLVK-GGPSERRRFLDRLLFQIEPVYASALSQYER 156 (361)
T ss_pred --------hhccEEEEccchhhhhc-CCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34456778888765544 4799999999988774 344444444444
No 288
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.09 E-value=1.8e-10 Score=142.70 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=92.9
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.+++..+........ . ...++|+||++.+++.+++.+++.+.
T Consensus 35 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~------~------~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~ 102 (491)
T PRK10982 35 AGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEA------L------ENGISMVHQELNLVLQRSVMDNMWLGRYPTK 102 (491)
T ss_pred CCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHH------H------hCCEEEEecccccccCCCHHHHhhccccccc
Confidence 457777777776 332 5566665533211000 0 13599999999888888877764210
Q ss_pred -----------H--------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh
Q psy9513 1242 -----------R--------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ 1278 (1491)
Q Consensus 1242 -----------~--------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~ 1278 (1491)
. + ++||++||+||+.+|++|||||||+|||+.+. ...
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 103 GMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred ccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 0 0 68999999999999999999999999999988 234
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|||+||||.+++..+| |++++|.+|
T Consensus 183 ~g~tvii~tH~~~~~~~~~----d~i~~l~~G 210 (491)
T PRK10982 183 RGCGIVYISHKMEEIFQLC----DEITILRDG 210 (491)
T ss_pred CCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 5889999999999999999 999999887
No 289
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.09 E-value=1.6e-10 Score=127.44 Aligned_cols=93 Identities=22% Similarity=0.304 Sum_probs=73.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 80 (1491)
|+++|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+..... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~~ 74 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTI----MGLLPPRS--GSIRFDGRDITGLPPHERAR 74 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEcCCCCHHHHHh
Confidence 457788 58876555 88888875 9999999999999999999 99999998 999999876643222 2234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+++|+ |++.+.+..++..++.+..
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~ 100 (222)
T cd03224 75 AGIGYVPEGRRIFPELTVEENLLLGA 100 (222)
T ss_pred cCeEEeccccccCCCCcHHHHHHHHh
Confidence 578999 9888877778888887653
No 290
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.09 E-value=3e-10 Score=127.51 Aligned_cols=63 Identities=21% Similarity=0.383 Sum_probs=57.0
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|.+|
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~----d~i~~l~~G 221 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIA----DYIAFMYRG 221 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 57999999999999999999999999999988 1123689999999999999999 999999887
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.09 E-value=2.4e-10 Score=144.70 Aligned_cols=125 Identities=16% Similarity=0.182 Sum_probs=91.5
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch--hhhhhhhhHHHHhH-H--
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE--EFIENLTAIDRAYV-V-- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~--~~~~~L~~~~~~~~-~-- 1241 (1491)
..+||=++++++ +| .+.+++..+.......+ +. ....++||||++ .+++.+++.+++.+ .
T Consensus 361 sGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~-----~~-----~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~ 430 (623)
T PRK10261 361 SGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKL-----QA-----LRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV 430 (623)
T ss_pred CCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHH-----HH-----hcCCeEEEecCchhhcCCCCCHHHHHHHHHHH
Confidence 356777777765 33 25666665544322111 11 123689999997 47777777665411 0
Q ss_pred -----------H---H---------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh
Q psy9513 1242 -----------R---I---------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD 1277 (1491)
Q Consensus 1242 -----------~---l---------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~ 1277 (1491)
. + ++||++||+||+.+|++|||||||+|||+.+. ..
T Consensus 431 ~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~ 510 (623)
T PRK10261 431 HGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQ 510 (623)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 0 0 68999999999999999999999999999988 22
Q ss_pred h-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 Q-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. .|.|||+||||++++..+| |++++|..|
T Consensus 511 ~~~g~tvi~isHdl~~v~~~~----dri~vl~~G 540 (623)
T PRK10261 511 RDFGIAYLFISHDMAVVERIS----HRVAVMYLG 540 (623)
T ss_pred HhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 3 4899999999999999999 999999877
No 292
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.08 E-value=2.5e-10 Score=115.04 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=63.8
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHH
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEE 1291 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~ 1291 (1491)
.++|+|+ +..-++||++||+||+.+|++++|||||++||+.+. ...-+.|+|++||+.+
T Consensus 64 ~i~~~~~---------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~ 128 (144)
T cd03221 64 KIGYFEQ---------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRY 128 (144)
T ss_pred EEEEEcc---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 5788887 333478999999999999999999999999999988 2333679999999999
Q ss_pred HHHHHhccccceEEEEecC
Q psy9513 1292 FIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1292 ~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++..+| |+++++.+|
T Consensus 129 ~~~~~~----d~v~~l~~g 143 (144)
T cd03221 129 FLDQVA----TKIIELEDG 143 (144)
T ss_pred HHHHhC----CEEEEEeCC
Confidence 999999 999999765
No 293
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.08 E-value=1.5e-10 Score=135.87 Aligned_cols=93 Identities=22% Similarity=0.301 Sum_probs=78.6
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|.++|+ ++|++..+ .+++|++. +++|+|||||||||||++| +|.++|.+ |.|.++|..+........+
T Consensus 3 ~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~L----aGll~p~s--G~I~l~G~~i~~~~~~~~~ 76 (402)
T PRK09536 3 MIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAI----NGTLTPTA--GTVLVAGDDVEALSARAAS 76 (402)
T ss_pred eEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHH----hcCCCCCC--cEEEECCEEcCcCCHHHHh
Confidence 3889999 59987666 89999986 9999999999999999999 99999998 9999999777543344556
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+.++|+ |++.+.+..++..+|.+.
T Consensus 77 ~~ig~v~q~~~l~~~~tv~e~v~~~ 101 (402)
T PRK09536 77 RRVASVPQDTSLSFEFDVRQVVEMG 101 (402)
T ss_pred cceEEEccCCCCCCCCCHHHHHHhc
Confidence 779999 998888888998888764
No 294
>PRK10869 recombination and repair protein; Provisional
Probab=99.08 E-value=1e-06 Score=108.73 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=50.9
Q ss_pred hhHHHHHHHhhc----CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1245 RDHKALAETFSR----NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1245 ~~~~~~a~~~~~----~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
++|++||++++. +|++++||||++|||+.+. ....+.|||+|||++.++ .+| |+.+.+.++.
T Consensus 436 ~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~a----d~~~~v~k~~ 509 (553)
T PRK10869 436 LSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCG----HQHFFVSKET 509 (553)
T ss_pred HHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhC----CEEEEEeccc
Confidence 455688888886 5899999999999999887 223578999999999876 578 9999988763
No 295
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=3.2e-10 Score=127.17 Aligned_cols=63 Identities=19% Similarity=0.341 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+|||+.+++..+| |++++|.+|
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~----d~i~~l~~G 220 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRIS----DRTAFFLMG 220 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhC----CEEEEEECC
Confidence 67999999999999999999999999999988 1223589999999999999999 999999887
No 296
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.08 E-value=1.6e-10 Score=135.01 Aligned_cols=93 Identities=17% Similarity=0.270 Sum_probs=77.9
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+++|++. +++|+|||||||||||++| +|..+|.+ |.|.++|..+.... ...
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~I----aGl~~p~~--G~I~~~g~~i~~~~--~~~ 85 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLI----AGFETPDS--GRIMLDGQDITHVP--AEN 85 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--eEEEECCEECCCCC--HHH
Confidence 3889999 69986555 77888875 9999999999999999999 99999998 99999998764321 224
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
++++|+ |++.+++..++..+|.+.+.
T Consensus 86 r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 112 (375)
T PRK09452 86 RHVNTVFQSYALFPHMTVFENVAFGLR 112 (375)
T ss_pred CCEEEEecCcccCCCCCHHHHHHHHHh
Confidence 679999 99999999999999987654
No 297
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=3.3e-10 Score=127.08 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |++++|++|
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~----d~i~~l~~G 224 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVS----DRVAFFQSG 224 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhc----CEEEEEECC
Confidence 57999999999999999999999999999988 1134789999999999999999 999999887
No 298
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=99.08 E-value=1.4e-10 Score=94.00 Aligned_cols=48 Identities=29% Similarity=0.571 Sum_probs=40.5
Q ss_pred cceeeecccccCCCCcceEEeec--cceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 5 DQLHIMGIRNFPADKNRVVRFQR--PLTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 5 ~~l~i~~~~~~~~~~~~~i~f~~--~~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.+|.+.|+..|. ...++|+. ++++|+|||||||||||+||.|||+|..
T Consensus 2 ~rl~L~Nw~~f~---~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 2 TRLQLVNWGSFD---GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cEEEEeccCccC---CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 467888777775 37888885 3899999999999999999999998854
No 299
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=3.5e-10 Score=127.79 Aligned_cols=63 Identities=14% Similarity=0.270 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~----d~v~~l~~G 238 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVS----QRTAFFHLG 238 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999987 1123689999999999999999 999999876
No 300
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.08 E-value=2.2e-10 Score=124.06 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++++|||||++||+.+. ....|.|+|++||+.+++.. | |+++.|.+|
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~----d~i~~l~~G 203 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-A----DQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-C----CEEEEEeCC
Confidence 68999999999999999999999999999875 12346899999999999987 8 999999765
No 301
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=1.6e-10 Score=126.92 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=72.4
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+... ....+.
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~-~~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKML----TTLLKPTS--GRATVAGHDVVRE-PREVRR 73 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEecCcC-hHHHhh
Confidence 467888 58876555 78888875 9999999999999999999 99999998 9999988765321 223345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~ 97 (220)
T cd03265 74 RIGIVFQDLSVDDELTGWENLYIH 97 (220)
T ss_pred cEEEecCCccccccCcHHHHHHHH
Confidence 78899 888777777888888764
No 302
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.07 E-value=2.7e-10 Score=141.68 Aligned_cols=123 Identities=13% Similarity=0.249 Sum_probs=91.8
Q ss_pred CcccceeEEEEe--cc----c-cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH---
Q psy9513 1172 KRRTYNYRVVQK--KN----G-IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV--- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~--- 1241 (1491)
..+||=++++++ .| | +.+++..+....... .....+||+||++.+++.+++.+++.+.
T Consensus 38 sGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~------------~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~ 105 (500)
T TIGR02633 38 AGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRD------------TERAGIVIIHQELTLVPELSVAENIFLGNEI 105 (500)
T ss_pred CCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHH------------HHhCCEEEEeeccccCCCCcHHHHHHhhccc
Confidence 467788887776 33 2 445555443321100 0123599999999888877766654110
Q ss_pred --------------H---------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------
Q psy9513 1242 --------------R---------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-------- 1275 (1491)
Q Consensus 1242 --------------~---------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-------- 1275 (1491)
+ + ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 106 TLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred cccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0 0 68999999999999999999999999999998
Q ss_pred -HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|||+||||.+++..+| |++++|.+|
T Consensus 186 ~l~~~g~tviiitHd~~~~~~~~----d~i~~l~~G 217 (500)
T TIGR02633 186 DLKAHGVACVYISHKLNEVKAVC----DTICVIRDG 217 (500)
T ss_pred HHHhCCCEEEEEeCcHHHHHHhC----CEEEEEeCC
Confidence 3345889999999999999999 999999877
No 303
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=3.1e-10 Score=128.52 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=88.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~---- 1241 (1491)
..+||=++++++ .| .+.+++..+.......+ ...++|+||++. +++.+++.+|+.+.
T Consensus 46 sGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~-------------~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 112 (271)
T PRK13632 46 SGKSTISKILTGLLKPQSGEIKIDGITISKENLKEI-------------RKKIGIIFQNPDNQFIGATVEDDIAFGLENK 112 (271)
T ss_pred CCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHH-------------hcceEEEEeCHHHhcCcccHHHHHHhHHHHc
Confidence 456777777766 22 25666655533211001 125899999984 66678888775220
Q ss_pred -----H----H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-
Q psy9513 1242 -----R----I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK- 1279 (1491)
Q Consensus 1242 -----~----l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~- 1279 (1491)
. + ++||++||+||+.+|++|+|||||+|||+.+. ....
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~ 192 (271)
T PRK13632 113 KVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTR 192 (271)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 0 0 68999999999999999999999999999987 2233
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+.|+|++|||.+++. +| |++++|.+|
T Consensus 193 ~~tiii~sH~~~~~~-~~----d~v~~l~~G 218 (271)
T PRK13632 193 KKTLISITHDMDEAI-LA----DKVIVFSEG 218 (271)
T ss_pred CcEEEEEEechhHHh-hC----CEEEEEECC
Confidence 489999999999986 68 999999877
No 304
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.07 E-value=1.7e-10 Score=134.19 Aligned_cols=92 Identities=18% Similarity=0.311 Sum_probs=77.5
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... ...+
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~I----aGl~~p~~--G~I~i~g~~i~~~~--~~~r 74 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRII----AGLEHQTS--GHIRFHGTDVSRLH--ARDR 74 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEECCCCC--HHHC
Confidence 789999 68986555 88888875 9999999999999999999 99999998 99999997764321 2346
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.++|+ |++.+++..++..++.+.+.
T Consensus 75 ~i~~v~Q~~~l~p~~tv~eni~~~~~ 100 (353)
T PRK10851 75 KVGFVFQHYALFRHMTVFDNIAFGLT 100 (353)
T ss_pred CEEEEecCcccCCCCcHHHHHHhhhh
Confidence 79999 99999999999999987654
No 305
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=3.9e-10 Score=126.77 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=56.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|.+|
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~----d~i~~l~~G 223 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRIS----DKTAFFLTG 223 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123589999999999999999 999999877
No 306
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.07 E-value=1.5e-10 Score=127.01 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=72.6
Q ss_pred eeeecc-cccCC----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPA----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|+++|+ .+|++ ..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+.....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i----~Gl~~~~~--G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNIL----GGLDRPTS--GEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHH----hCCcCCCc--eeEEECCEehhhcchh
Confidence 457788 58875 345 88888875 9999999999999999999 99999998 999999876632111
Q ss_pred ---HHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 ---ASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 ---~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
...+..++|+ |++.+++..++..++.+.+
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 107 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPL 107 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHH
Confidence 1234578999 8888777778888887654
No 307
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=3.7e-10 Score=127.32 Aligned_cols=63 Identities=16% Similarity=0.333 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||++|+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|.+|
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~----d~i~~l~~G 230 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVS----DQTAFFYMG 230 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123689999999999999999 999999877
No 308
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.07 E-value=1.2e-10 Score=122.90 Aligned_cols=85 Identities=20% Similarity=0.337 Sum_probs=66.8
Q ss_pred EEEEccchhhhh--hhhhHHHHhHHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceE
Q psy9513 1219 LIVITHDEEFIE--NLTAIDRAYVVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQL 1283 (1491)
Q Consensus 1219 l~~i~~~~~~~~--~L~~~~~~~~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~ 1283 (1491)
++|+|| ++. +|....+..+..+ ++||++||+||+.+|++++|||||+|||+.+. .... +.|+
T Consensus 75 i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~ti 151 (180)
T cd03214 75 IAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTV 151 (180)
T ss_pred HhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 667776 333 2322222233333 89999999999999999999999999999987 2233 7899
Q ss_pred EEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1284 IVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1284 i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|||.+++..+| |+++.+..|
T Consensus 152 ii~sh~~~~~~~~~----d~~~~l~~g 174 (180)
T cd03214 152 VMVLHDLNLAARYA----DRVILLKDG 174 (180)
T ss_pred EEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999 999999876
No 309
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.07 E-value=3.8e-10 Score=127.07 Aligned_cols=88 Identities=11% Similarity=0.257 Sum_probs=72.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-H------------------------------HH----------hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-V------------------------------RI----------VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~------------------------------~l----------~~~~~~~a~~~~~ 1256 (1491)
.++|+||++.+++.+++.+++.+ . .+ ++||++||+||+.
T Consensus 86 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (258)
T PRK14241 86 TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165 (258)
T ss_pred ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 58999999888887776665421 0 00 5799999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++++..
T Consensus 166 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~----d~i~~l~~ 222 (258)
T PRK14241 166 EPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVS----DQTAFFNL 222 (258)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC----CEEEEEec
Confidence 9999999999999999987 1134689999999999999999 99999973
No 310
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.07 E-value=2.6e-10 Score=126.94 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=55.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++||+||+.+|++|+|||||+|||+.+. .... |.|+|++|||.+++..+| |+++.|.
T Consensus 125 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~----d~i~~l~ 195 (251)
T PRK09544 125 ETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKT----DEVLCLN 195 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC----CEEEEEC
Confidence 78999999999999999999999999999987 2233 789999999999999999 9999984
No 311
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.07 E-value=1.5e-10 Score=144.27 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=92.9
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-----
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV----- 1240 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~----- 1240 (1491)
+.++||=.+++++ .| .+.+|+-++.......+ | .++||+|||+.|+.| +..+|+-+
T Consensus 509 GsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l-----R--------~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~ 574 (709)
T COG2274 509 GSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASL-----R--------RQVGYVLQDPFLFSG-SIRENIALGNPEA 574 (709)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHH-----H--------hheeEEcccchhhcC-cHHHHHhcCCCCC
Confidence 3456777776666 44 37788887777766555 3 269999999988876 33333311
Q ss_pred --------HH----------------------------HhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------H
Q psy9513 1241 --------VR----------------------------IVRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------S 1276 (1491)
Q Consensus 1241 --------~~----------------------------l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~ 1276 (1491)
.+ -+|||++|||||..+|++|+|||||++||+.+. .
T Consensus 575 ~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~ 654 (709)
T COG2274 575 TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ 654 (709)
T ss_pred CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence 00 069999999999999999999999999999987 3
Q ss_pred hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
...|.|+|+|||....+.. | |++++++.|
T Consensus 655 ~~~~~T~I~IaHRl~ti~~-a----drIiVl~~G 683 (709)
T COG2274 655 ILQGRTVIIIAHRLSTIRS-A----DRIIVLDQG 683 (709)
T ss_pred HhcCCeEEEEEccchHhhh-c----cEEEEccCC
Confidence 3457999999999988775 5 999999888
No 312
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=2.2e-10 Score=127.82 Aligned_cols=92 Identities=15% Similarity=0.300 Sum_probs=72.9
Q ss_pred eeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 7 LHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
|.++|+ .+|++ ... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+........+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~ 74 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI----NRLIEPTS--GEIFIDGEDIREQDPVELR 74 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--ceEEECCeEcCcCChHHhh
Confidence 357788 48876 455 78888875 9999999999999999999 99999998 9999998766432233445
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..++|+ |++.+.+..++..++.+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~e~l~~~ 99 (242)
T cd03295 75 RKIGYVIQQIGLFPHMTVEENIALV 99 (242)
T ss_pred cceEEEccCccccCCCcHHHHHHHH
Confidence 678999 988888778888887653
No 313
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.07 E-value=4.1e-10 Score=126.81 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=55.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||++++..+| |+++.|..
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~----d~i~~l~~ 224 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVS----DFTAFFST 224 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CeEEEEec
Confidence 68999999999999999999999999999988 1123689999999999999999 99999974
No 314
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.07 E-value=1.6e-10 Score=128.52 Aligned_cols=94 Identities=21% Similarity=0.251 Sum_probs=73.6
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 80 (1491)
|+++|+ .+|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.|.++|..+..... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~~ 74 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI----SGFLRPTS--GSVLFDGEDITGLPPHEIAR 74 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHH----cCCCCCCC--ceEEECCEECCCCCHHHHHh
Confidence 457788 47875445 77888765 9999999999999999999 99999998 999999876643222 2234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.+++|+ |.+.+++..++..++.+.+.
T Consensus 75 ~~i~~v~q~~~l~~~~tv~~~l~~~~~ 101 (236)
T cd03219 75 LGIGRTFQIPRLFPELTVLENVMVAAQ 101 (236)
T ss_pred cCEEEEecccccccCCCHHHHHHHHHh
Confidence 678999 98888888899988876543
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.06 E-value=2.1e-10 Score=121.98 Aligned_cols=70 Identities=17% Similarity=0.336 Sum_probs=63.5
Q ss_pred HHhHHHH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHHHhccccce
Q psy9513 1237 RAYVVRI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIENLTAIDRAY 1303 (1491)
Q Consensus 1237 ~~~~~~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~~~~~~~~~ 1303 (1491)
+.||+++ ++||++|||||+.+|+++++|||+++||.... ....|.++|+||||+..+.++| |+
T Consensus 104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is----dr 179 (268)
T COG4608 104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS----DR 179 (268)
T ss_pred hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc----cc
Confidence 3477777 79999999999999999999999999998665 4456999999999999999999 99
Q ss_pred EEEEecC
Q psy9513 1304 VVRIVRD 1310 (1491)
Q Consensus 1304 ~~~l~~~ 1310 (1491)
+++|..|
T Consensus 180 i~VMy~G 186 (268)
T COG4608 180 IAVMYLG 186 (268)
T ss_pred EEEEecC
Confidence 9999988
No 316
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=2e-10 Score=129.13 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=76.0
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCC-----CCCCceEeeCCC
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQG-----ASSGKNFVHDPR 70 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~-----~~~g~~~~~~~~ 70 (1491)
||. .|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|.++|. + |.|.++|..
T Consensus 1 ~~~--~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~~~~~~--G~i~~~g~~ 72 (253)
T PRK14267 1 MKF--AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTF----NRLLELNEEARVE--GEVRLFGRN 72 (253)
T ss_pred Ccc--eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHH----hccCCcccCCCCc--eEEEECCEE
Confidence 555 3889999 58876555 88888875 9999999999999999999 9999874 5 999999876
Q ss_pred CCC--CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 71 IGK--KDEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 71 ~~~--~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+.. ......+.+++|+ |++.+++..++..++.+.+
T Consensus 73 i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 110 (253)
T PRK14267 73 IYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV 110 (253)
T ss_pred ccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHH
Confidence 631 1122345678999 9888777778888887643
No 317
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=3e-10 Score=125.74 Aligned_cols=62 Identities=26% Similarity=0.290 Sum_probs=55.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++. .| |+++.|.+|
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~----d~i~~l~~g 213 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NA----DKILVLDDG 213 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hC----CEEEEEeCC
Confidence 68999999999999999999999999999987 1234789999999999986 48 999999877
No 318
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=2e-10 Score=125.26 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=73.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc--ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP--LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~--~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
|+++|+ .+|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+.... ...+..
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~-~~~~~~ 73 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRIL----ATLTPPSS--GTIRIDGQDVLKQP-QKLRRR 73 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHH----hCCCCCCc--cEEEECCCccccch-HHHHhh
Confidence 457788 47876555 78888865 9999999999999999999 99999998 99999997764322 334567
Q ss_pred cccc-ccCCCCCCccHHHHHHhhc
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
++|+ |++.+++..++..++.+..
T Consensus 74 i~~~~q~~~~~~~~tv~~~l~~~~ 97 (211)
T cd03264 74 IGYLPQEFGVYPNFTVREFLDYIA 97 (211)
T ss_pred eEEecCCCcccccCCHHHHHHHHH
Confidence 8999 9888777778888887643
No 319
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=4.3e-10 Score=127.32 Aligned_cols=62 Identities=15% Similarity=0.316 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|||++|||.+++..+| |++++|.+
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~ 235 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVA----DWTAFFNT 235 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEec
Confidence 68999999999999999999999999999988 1123689999999999999999 99999973
No 320
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=1.7e-10 Score=128.41 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=73.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.++++|..+.... ....
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~--~~~~ 74 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLI----AGLERPDS--GTILFGGEDATDVP--VQER 74 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECCcCC--cccc
Confidence 789999 58876555 88888875 9999999999999999999 99999998 99999886653211 1235
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+++|+ |++.+.+..++..++.+.+
T Consensus 75 ~i~~v~q~~~~~~~~tv~e~l~~~~ 99 (239)
T cd03296 75 NVGFVFQHYALFRHMTVFDNVAFGL 99 (239)
T ss_pred ceEEEecCCcccCCCCHHHHHhhhh
Confidence 68999 8888777788888887654
No 321
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.06 E-value=1.9e-10 Score=131.98 Aligned_cols=91 Identities=14% Similarity=0.266 Sum_probs=76.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+... ....+.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l----~Gl~~~~~--G~i~i~g~~~~~~-~~~~~~ 75 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKII----TGYLPPDS--GSVQVCGEDVLQN-PKEVQR 75 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEcccC-hHHHHh
Confidence 789999 69986666 88999886 9999999999999999999 99999998 9999998766432 234567
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+++|+ |.+.+++..++..++.+.
T Consensus 76 ~ig~~~q~~~l~~~~tv~e~l~~~ 99 (301)
T TIGR03522 76 NIGYLPEHNPLYLDMYVREYLQFI 99 (301)
T ss_pred ceEEecCCCCCCCCCcHHHHHHHH
Confidence 79999 988888888888887753
No 322
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.06 E-value=4.3e-10 Score=126.45 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. .. ..|.|+|+||||.+++..+| |++++|.+|
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~----d~~~~l~~G 225 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA----QRLLVMQQG 225 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----CEEEEEECC
Confidence 68999999999999999999999999999988 22 24889999999999999999 999999877
No 323
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=4.3e-10 Score=126.69 Aligned_cols=62 Identities=13% Similarity=0.288 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||++|+.+|++|+|||||+|||+.+. . ...+.|+|+||||++++..+| |++++|.+
T Consensus 155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~----d~i~~l~~ 226 (261)
T PRK14258 155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS----DFTAFFKG 226 (261)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc----CEEEEEcc
Confidence 68999999999999999999999999999987 1 224889999999999999999 99999987
No 324
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.06 E-value=4.2e-10 Score=127.48 Aligned_cols=63 Identities=17% Similarity=0.351 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|++|
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~----d~i~~l~~G 243 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVS----DYTAFMYMG 243 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999987 1123689999999999999999 999999887
No 325
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=3.4e-10 Score=128.14 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=86.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYV----- 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~----- 1240 (1491)
..+||=++++++ .| .+.+|+.++.......+ ..+++|+||++. ++++++..+++.+
T Consensus 46 sGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~-------------~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~ 112 (269)
T PRK13648 46 SGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKL-------------RKHIGIVFQNPDNQFVGSIVKYDVAFGLENH 112 (269)
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-------------HhheeEEEeChHHhcccccHHHHHHhhHHhc
Confidence 456777777776 22 26666665543221111 125899999985 5555554443211
Q ss_pred -----------HHH--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-c
Q psy9513 1241 -----------VRI--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-K 1279 (1491)
Q Consensus 1241 -----------~~l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~ 1279 (1491)
..+ ++||++||+||+.+|++|+|||||+|||+.+. ... .
T Consensus 113 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~ 192 (269)
T PRK13648 113 AVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEH 192 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 000 68999999999999999999999999999988 222 3
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++.. | |++++|.+|
T Consensus 193 ~~tiiivtH~~~~~~~-~----d~i~~l~~G 218 (269)
T PRK13648 193 NITIISITHDLSEAME-A----DHVIVMNKG 218 (269)
T ss_pred CCEEEEEecCchHHhc-C----CEEEEEECC
Confidence 7899999999999875 8 999999877
No 326
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.7e-10 Score=128.26 Aligned_cols=90 Identities=16% Similarity=0.226 Sum_probs=70.6
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+........+.
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~i~~~~~~~~~~ 77 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI----NRLIDPTE--GSILIDGVDIKTIDVIDLRR 77 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEEhhhcChHHhhh
Confidence 789999 58876555 88888875 9999999999999999999 99999998 99999987663322233456
Q ss_pred Ccccc-ccCCCCCCccHHHHHHh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
.++|+ |++.+++ .++..++.+
T Consensus 78 ~i~~~~q~~~~~~-~tv~e~l~~ 99 (241)
T PRK14250 78 KIGMVFQQPHLFE-GTVKDNIEY 99 (241)
T ss_pred cEEEEecCchhch-hhHHHHHhc
Confidence 78899 8876664 477776654
No 327
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.06 E-value=4.9e-10 Score=126.53 Aligned_cols=63 Identities=24% Similarity=0.288 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .+.|+|++|||.+++..+| |+++.|.+|
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~----d~i~~l~~G 228 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC----QRVMVMDNG 228 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999876 222 3789999999999999999 999999876
No 328
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.06 E-value=2.2e-10 Score=124.88 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=70.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+. ...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~----~~~~~ 70 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMI----LGIILPDS--GEVLFDGKPLD----IAARN 70 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCCchh----HHHHc
Confidence 457788 47875555 77888865 9999999999999999999 99999998 99999987662 23355
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~ 94 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYL 94 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHH
Confidence 78999 988877778888887654
No 329
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.06 E-value=1.1e-10 Score=111.62 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=91.8
Q ss_pred cccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHH-hHHHH---
Q psy9513 1173 RRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRA-YVVRI--- 1243 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~-~~~~l--- 1243 (1491)
.+|+-+++|+. .|+ +-+.++-+..+.-..+ |. ++.|+-|.|.+|++ ++.+|. +||++
T Consensus 41 GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~-----Rq--------~VsY~~Q~paLfg~-tVeDNlifP~~~r~r 106 (223)
T COG4619 41 GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAY-----RQ--------QVSYCAQTPALFGD-TVEDNLIFPWQIRNR 106 (223)
T ss_pred cHHHHHHHHHhccCCCCceEEEcCccccccChHHH-----HH--------HHHHHHcCcccccc-chhhccccchHHhcc
Confidence 35555555554 222 3445555555554333 32 57788888888765 667775 77664
Q ss_pred -------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCce
Q psy9513 1244 -------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQ 1282 (1491)
Q Consensus 1244 -------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~ 1282 (1491)
.+||.+|+|.|..-|++|+|||||++||+.+. ...++.+
T Consensus 107 r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vA 186 (223)
T COG4619 107 RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186 (223)
T ss_pred CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceE
Confidence 48999999999999999999999999999987 2366899
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecCCC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRDHK 1312 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~~~ 1312 (1491)
++.||||.+.+.+.+ ++++.+..|..
T Consensus 187 v~WiTHd~dqa~rha----~k~itl~~G~~ 212 (223)
T COG4619 187 VLWITHDKDQAIRHA----DKVITLQPGHA 212 (223)
T ss_pred EEEEecChHHHhhhh----heEEEeccCcc
Confidence 999999999999999 99999987733
No 330
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.06 E-value=2.3e-10 Score=126.72 Aligned_cols=94 Identities=21% Similarity=0.306 Sum_probs=74.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 80 (1491)
|+++|+ ..|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+..... ....
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 74 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL----MGLLPVKS--GSIRLDGEDITKLPPHERAR 74 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--CEEEECCEECCCCCHHHHHH
Confidence 457888 58876555 88888875 9999999999999999999 99999998 999999876643222 2234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.+++|+ |++.+++..++..++.+.+.
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~~ 101 (230)
T TIGR03410 75 AGIAYVPQGREIFPRLTVEENLLTGLA 101 (230)
T ss_pred hCeEEeccCCcccCCCcHHHHHHHHHH
Confidence 678999 98888777788888876543
No 331
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.8e-10 Score=126.61 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.++|+||||.+++..+| |++++|..|
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~----d~i~~l~~G 238 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARAS----DYTAFFYLG 238 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhc----CEEEEEECC
Confidence 58999999999999999999999999999987 1134689999999999999999 999999877
No 332
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.9e-10 Score=125.82 Aligned_cols=86 Identities=14% Similarity=0.242 Sum_probs=71.9
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH------------H------------------------H---hhhHHHHHHHhhcCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV------------R------------------------I---VRDHKALAETFSRNC 1258 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~------------~------------------------l---~~~~~~~a~~~~~~~ 1258 (1491)
.++|+||++.++ .++..+|+.+. . + ++||++||+||+.+|
T Consensus 90 ~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 90 YIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred ceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 589999999877 47777665210 0 0 689999999999999
Q ss_pred CeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1259 GIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1259 ~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++|+|||||+|||+.+. ....+.|+|++|||++++..+| |++++|.
T Consensus 169 ~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~----d~v~~l~ 222 (261)
T PRK14263 169 EVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVA----DTTAFFS 222 (261)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----CEEEEEe
Confidence 99999999999999988 1234689999999999999999 9999996
No 333
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=4.9e-10 Score=125.83 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|+||||.+++..+| |+++.|.+|
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~----d~i~~l~~G 222 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRIS----DQTAFLMNG 222 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhc----CEEEEEECC
Confidence 68999999999999999999999999999988 1133689999999999999999 999999877
No 334
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.05 E-value=2.4e-10 Score=124.36 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=72.8
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~--~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKII----LGLIKPDS--GEITFDGKSYQKN--IEALR 72 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCcCCCc--eEEEECCCcccch--HHHHh
Confidence 457788 58866555 88888875 9999999999999999999 99999998 9999998766321 23345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.++|+ |++.+.+..++..++.+..
T Consensus 73 ~i~~~~q~~~~~~~~tv~e~l~~~~ 97 (208)
T cd03268 73 RIGALIEAPGFYPNLTARENLRLLA 97 (208)
T ss_pred hEEEecCCCccCccCcHHHHHHHHH
Confidence 68899 8888877888988887654
No 335
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.05 E-value=3.5e-10 Score=126.03 Aligned_cols=61 Identities=28% Similarity=0.325 Sum_probs=55.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+|++.+|++|+|||||+|||+.+. .. .|.++|++|||.+++. +| |+++.|.+|
T Consensus 144 ~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~-~~----d~v~~l~~G 213 (238)
T cd03249 144 QKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIR-NA----DLIAVLQNG 213 (238)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHh-hC----CEEEEEECC
Confidence 58999999999999999999999999999987 23 6789999999999997 78 999999887
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.05 E-value=2.6e-10 Score=137.18 Aligned_cols=62 Identities=29% Similarity=0.507 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|++||++|..+|++|+|||||++||..++ + .-.| |+|+||||.+|+..+| .+++-++.|
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~g-tviiVSHDR~FLd~V~----t~I~~ld~g 226 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG-TVIVVSHDRYFLDNVA----THILELDRG 226 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHh----hheEEecCC
Confidence 57899999999999999999999999999999 3 3345 9999999999999999 888888877
No 337
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=2.4e-10 Score=127.74 Aligned_cols=93 Identities=14% Similarity=0.292 Sum_probs=72.9
Q ss_pred eeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc---HH
Q psy9513 7 LHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD---EA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~---~~ 77 (1491)
|+++|+ ++|++ ..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+.... ..
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~ 74 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCL----NGLVEPTS--GSVLIDGTDINKLKGKALR 74 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCcCCCC--ceEEECCEeccccCHhHHH
Confidence 457788 58875 445 78888875 9999999999999999999 99999998 99999987664322 22
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+.+++|+ |++.+++..++..++.+.+
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 103 (241)
T cd03256 75 QLRRQIGMIFQQFNLIERLSVLENVLSGR 103 (241)
T ss_pred HHHhccEEEcccCcccccCcHHHHHHhhh
Confidence 345678999 8888777788888887644
No 338
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.05 E-value=4.9e-11 Score=133.40 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=42.5
Q ss_pred CcccceeeecccccCCCCcceE-EeeccceEEEccCCCChhhHHHHHHhhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVV-RFQRPLTLIVGENGCGKTTIIECIKFALT 52 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i-~f~~~~~~i~G~NGaGKStl~~~i~~~l~ 52 (1491)
|.|++|.+.||++|+ ....+ +|++++++||||||||||||++||.|+|+
T Consensus 1 m~i~~~~~~~f~~~~--~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 1 MHIKEIILDGFKSYA--TRTVISGFDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CEeeEEEEeCccccC--cCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 578899999999997 23444 88889999999999999999999988883
No 339
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.05 E-value=2.4e-10 Score=125.62 Aligned_cols=91 Identities=15% Similarity=0.277 Sum_probs=72.1
Q ss_pred eeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 7 LHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|.++|+ ++|++ ..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ....
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~-~~~~ 73 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKML----TGELRPTS--GTAYINGYSIRTD-RKAA 73 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEecccc-hHHH
Confidence 457788 58875 445 88888875 9999999999999999999 99999998 9999988766332 2334
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+..++|+ |++.+.+..++..++.+.
T Consensus 74 ~~~i~~v~q~~~~~~~~tv~~~l~~~ 99 (220)
T cd03263 74 RQSLGYCPQFDALFDELTVREHLRFY 99 (220)
T ss_pred hhhEEEecCcCCccccCCHHHHHHHH
Confidence 5568999 888777777888887664
No 340
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.05 E-value=2.1e-10 Score=127.24 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=72.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 80 (1491)
|.+.|+ ++|++... .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+..... ...+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~ 74 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMI----VGLVKPDS--GKILLDGQDITKLPMHKRAR 74 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEecccCCHhHHHh
Confidence 457788 58876555 78888865 9999999999999999999 99999998 999998876533222 2234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+++|+ |++.+++..++..++.+.+
T Consensus 75 ~~i~~~~q~~~~~~~~tv~~~l~~~~ 100 (232)
T cd03218 75 LGIGYLPQEASIFRKLTVEENILAVL 100 (232)
T ss_pred ccEEEecCCccccccCcHHHHHHHHH
Confidence 568999 8887777778888887643
No 341
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.05 E-value=5.1e-10 Score=125.76 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++++|||||+|||+.+. ....+.|+|++|||.+++..+| |+++.|.+|
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~----d~v~~l~~G 224 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVS----DYTGFMYLG 224 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123689999999999999999 999999887
No 342
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.05 E-value=4.2e-10 Score=125.31 Aligned_cols=48 Identities=27% Similarity=0.570 Sum_probs=41.5
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
++.|.+.||++|.+ ...|.|..++++|+||||||||||++||+|+|++
T Consensus 1 i~~i~l~nf~~~~~--~~~~~~~~~~~~i~G~NGsGKStll~ai~~~l~~ 48 (247)
T cd03275 1 LKRLELENFKSYKG--RHVIGPFDRFTCIIGPNGSGKSNLMDAISFVLGE 48 (247)
T ss_pred CcEEEEECccccCC--CeeecCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45799999999962 3567888789999999999999999999999953
No 343
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.05 E-value=3.2e-10 Score=124.66 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=54.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||++|||.+++ .+| |+++.+.+|
T Consensus 145 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~----d~v~~l~~g 214 (220)
T cd03245 145 QRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLV----DRIIVMDSG 214 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhC----CEEEEEeCC
Confidence 58999999999999999999999999999998 112247999999999987 688 999999876
No 344
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.05 E-value=3.3e-10 Score=122.08 Aligned_cols=91 Identities=22% Similarity=0.318 Sum_probs=73.4
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ ++|++... .+++|++. +++|+||||||||||+++| +|..+|.+ |.++++|..+.. .....+.
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i----~G~~~~~~--G~v~~~g~~~~~-~~~~~~~ 74 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLI----AGLLNPEK--GEILFERQSIKK-DLCTYQK 74 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--eeEEECCCcccc-CHHHHHh
Confidence 678888 58876556 88888875 9999999999999999999 99999998 999999876632 1233456
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 75 ~i~~~~q~~~~~~~~tv~~~~~~~ 98 (200)
T PRK13540 75 QLCFVGHRSGINPYLTLRENCLYD 98 (200)
T ss_pred heEEeccccccCcCCCHHHHHHHH
Confidence 78899 887777778888887754
No 345
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.05 E-value=2.8e-10 Score=125.14 Aligned_cols=92 Identities=16% Similarity=0.270 Sum_probs=73.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|.++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+.........
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~ 80 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIV----ASLISPTS--GTLLFEGEDISTLKPEIYR 80 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHH----hcccCCCC--CeEEECCEEcCcCCHHHHH
Confidence 3889999 58876556 88888876 9999999999999999999 99999998 9999998765332223345
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.+++|+ |++.+++ .++..++.+.
T Consensus 81 ~~i~~~~q~~~l~~-~tv~enl~~~ 104 (225)
T PRK10247 81 QQVSYCAQTPTLFG-DTVYDNLIFP 104 (225)
T ss_pred hccEEEeccccccc-ccHHHHHHhH
Confidence 678999 8877665 4888877653
No 346
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=4.8e-10 Score=127.51 Aligned_cols=62 Identities=21% Similarity=0.250 Sum_probs=56.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ... .|.|||+||||++++.. | |++++|++|
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~----d~v~~l~~G 220 (280)
T PRK13633 149 QKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-A----DRIIVMDSG 220 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-C----CEEEEEECC
Confidence 68999999999999999999999999999998 223 48999999999999875 8 999999877
No 347
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2.8e-10 Score=126.32 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=74.0
Q ss_pred eeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|.++|+ ++|++. .+ .+++|+++ +++|+||||||||||+++| +|.+||.+ |.+.++|..+.....
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCI----NGLERPTS--GSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEcccCCHH
Confidence 678888 588765 45 78888875 9999999999999999999 99999998 999999876643211
Q ss_pred --HHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 --ASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 --~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
...+.+++|+ |++.+++..++..++.+.+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~ 107 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPL 107 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHH
Confidence 1235678999 9888877788888887654
No 348
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.04 E-value=3.1e-10 Score=124.61 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=73.5
Q ss_pred eeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 7 LHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
|.++|+ ++|++. .+ .+++|+++ +++|+||||||||||+++| +|..||.+ |.+.++|..+.. ...
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~-~~~ 74 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRML----AGLLEPDA--GFATVDGFDVVK-EPA 74 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCcCCCC--ceEEECCEEccc-CHH
Confidence 567888 588764 45 88888865 9999999999999999999 99999998 999998876632 122
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+++..++..++.+..
T Consensus 75 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 103 (218)
T cd03266 75 EARRRLGFVSDSTGLYDRLTARENLEYFA 103 (218)
T ss_pred HHHhhEEEecCCcccCcCCCHHHHHHHHH
Confidence 345678999 8887777778888887643
No 349
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2.1e-10 Score=125.28 Aligned_cols=91 Identities=14% Similarity=0.274 Sum_probs=71.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.... ....
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~~~~~~--~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLI----AGLERPDS--GEILIDGRDVTGVP--PERR 72 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--eEEEECCEEcCcCc--hhhc
Confidence 457788 58876555 88888875 9999999999999999999 99999998 99999887663211 1235
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.++|+ |++.+.+..++..++.+.+
T Consensus 73 ~i~~v~q~~~~~~~~tv~~~l~~~~ 97 (213)
T cd03259 73 NIGMVFQDYALFPHLTVAENIAFGL 97 (213)
T ss_pred cEEEEcCchhhccCCcHHHHHHhHH
Confidence 68899 8887777778888887654
No 350
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=5.7e-10 Score=126.31 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~----dri~~l~~G 238 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS----DRAALFFDG 238 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999987 1123589999999999999999 999999877
No 351
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.04 E-value=5.4e-10 Score=122.85 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=70.3
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-----------HH------------------------hhhHHHHHHHhhcCCCeeE
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-----------RI------------------------VRDHKALAETFSRNCGIFA 1262 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-----------~l------------------------~~~~~~~a~~~~~~~~~l~ 1262 (1491)
.++|+||++.|++. +..+++.+. .+ ++||++||+||+.+|++++
T Consensus 82 ~i~~~~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (225)
T PRK10247 82 QVSYCAQTPTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLL 160 (225)
T ss_pred ccEEEecccccccc-cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 58899999887763 776664210 00 6899999999999999999
Q ss_pred EcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1263 LDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1263 lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||||+|||+.+. ... .|.++|++|||.+++. .| |+++.|++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~----d~i~~l~~~ 213 (225)
T PRK10247 161 LDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HA----DKVITLQPH 213 (225)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hC----CEEEEEecc
Confidence 9999999999988 222 3789999999999986 58 999999643
No 352
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.04 E-value=2.4e-10 Score=125.23 Aligned_cols=93 Identities=16% Similarity=0.264 Sum_probs=73.0
Q ss_pred eeeecc-cccCCC--Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---
Q psy9513 7 LHIMGI-RNFPAD--KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE--- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~~--~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~--- 76 (1491)
|+++|+ .+|++. .+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.....
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~ 75 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLI----LGIEKPTR--GKIRFNGQDLTRLRGREI 75 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEehhhcChhHH
Confidence 678888 588542 35 78888875 9999999999999999999 99999998 999999876632111
Q ss_pred HHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 ASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 ~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
...+..++|+ |++.+.+..++..++.+.+
T Consensus 76 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 105 (216)
T TIGR00960 76 PFLRRHIGMVFQDHRLLSDRTVYDNVAFPL 105 (216)
T ss_pred HHHHHhceEEecCccccccccHHHHHHHHH
Confidence 1245678999 9888777788888887654
No 353
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=99.04 E-value=6.1e-07 Score=105.81 Aligned_cols=47 Identities=28% Similarity=0.498 Sum_probs=38.9
Q ss_pred cceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 5 DQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 5 ~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
..|+|+||--+ ..-+++|..++|+|.|.+|||||-|++||.++|+|.
T Consensus 3 ~~LsIknfaiI---e~L~leF~~GltVlTGETGAGKSIiidAl~lllG~r 49 (557)
T COG0497 3 LELSIKNFAII---EELELEFEKGLTVLTGETGAGKSIIIDALGLLLGGR 49 (557)
T ss_pred cEEeeeheeee---eeeeeeccCCceEEecCCCCcHhHHHHHHHHHhCCC
Confidence 46888866322 236799999999999999999999999999999664
No 354
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.04 E-value=2.1e-10 Score=113.77 Aligned_cols=90 Identities=20% Similarity=0.309 Sum_probs=71.9
Q ss_pred eeeecc-cccCCCC-c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 7 LHIMGI-RNFPADK-N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~-~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
|++.++ |+|++.. . .+++|... +++|.|||||||||+|++| ++.+.|++ |.+.++|.+... .+...+
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmi----atlL~P~~--G~v~idg~d~~~-~p~~vr 74 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMI----ATLLIPDS--GKVTIDGVDTVR-DPSFVR 74 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHH----HHhccCCC--ceEEEeeccccc-ChHHHh
Confidence 678888 8999865 3 89999986 9999999999999999999 99999998 999999877632 233445
Q ss_pred cCcccc-ccCCCCCCccHHHHHHh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
++++.. -..++....+++.++.+
T Consensus 75 r~IGVl~~e~glY~RlT~rEnl~~ 98 (245)
T COG4555 75 RKIGVLFGERGLYARLTARENLKY 98 (245)
T ss_pred hhcceecCCcChhhhhhHHHHHHH
Confidence 556555 44556777888888776
No 355
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.04 E-value=2.6e-10 Score=124.80 Aligned_cols=92 Identities=15% Similarity=0.273 Sum_probs=72.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC--CcHHHh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK--KDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~--~~~~~~ 79 (1491)
|.++|+ .+|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.. ......
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 74 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI----NLLEEPDS--GTIIIDGLKLTDDKKNINEL 74 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEECCccchhHHHH
Confidence 357788 47876555 78888865 9999999999999999999 99999998 999998876532 122334
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+.+++|+ |++.+.+..++..++.+.
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~e~l~~~ 100 (213)
T cd03262 75 RQKVGMVFQQFNLFPHLTVLENITLA 100 (213)
T ss_pred HhcceEEecccccCCCCcHHHHHHhH
Confidence 5679999 988877778888887764
No 356
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.04 E-value=2e-10 Score=125.57 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=58.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+||||+||.||+..|++||.||||++||.... ....|.++++||||+..+.+++ |++++|.+|
T Consensus 162 qRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~A----DrV~VM~~G 234 (534)
T COG4172 162 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFA----DRVYVMQHG 234 (534)
T ss_pred hhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhh----hhEEEEecc
Confidence 69999999999999999999999999998765 3456999999999999999999 999999988
No 357
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.04 E-value=2.9e-10 Score=131.04 Aligned_cols=94 Identities=17% Similarity=0.287 Sum_probs=76.8
Q ss_pred eeeecc-cccCC----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPA----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|+++|+ ++|++ ..+ .+|+|+++ +++|+||||||||||+++| .|..+|.+ |.|+++|..+.....
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I----~gl~~p~~--G~I~i~G~~i~~~~~~ 75 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV----NLLERPTS--GSVIVDGQDLTTLSNS 75 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEECCcCCHH
Confidence 678899 68852 234 88898876 9999999999999999999 99999998 999999987744222
Q ss_pred --HHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 77 --ASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 77 --~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...++.++|+ |++.+.+..++..+|.+.+.
T Consensus 76 ~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~ 108 (343)
T TIGR02314 76 ELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 108 (343)
T ss_pred HHHHHhcCEEEEECCccccccCcHHHHHHHHHH
Confidence 2346789999 99988888899999987654
No 358
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.04 E-value=6.2e-10 Score=126.48 Aligned_cols=63 Identities=13% Similarity=0.298 Sum_probs=54.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEE-EEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVV-RIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~-~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.+||++|||.+++..+| |+++ .+.+|
T Consensus 185 e~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~----dri~v~l~~G 256 (285)
T PRK14254 185 QQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARIS----DKTAVFLTGG 256 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhc----CEEEEEeeCC
Confidence 68999999999999999999999999999987 1122479999999999999999 9965 45665
No 359
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=4.1e-10 Score=125.26 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=74.6
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~ 79 (1491)
.|.+.|+ ++|++... .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+..... ...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~~~~~~~~~~~ 78 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTL----CGDPRATS--GRIVFDGKDITDWQTAKIM 78 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----cCCCCCCC--ceEEECCEecCCCCHHHHH
Confidence 4889999 58876555 88888875 9999999999999999999 99999998 999999876643222 234
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+.+++|+ |++.+++..++..++.+.
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~~~l~~~ 104 (237)
T PRK11614 79 REAVAIVPEGRRVFSRMTVEENLAMG 104 (237)
T ss_pred HhCEEEeccCcccCCCCcHHHHHHHh
Confidence 5678999 888777777888887664
No 360
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.04 E-value=2.7e-10 Score=131.08 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=74.3
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ....+.
T Consensus 5 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~-~~~~~~ 77 (303)
T TIGR01288 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARML----LGMISPDR--GKITVLGEPVPSR-ARLARV 77 (303)
T ss_pred EEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECccc-HHHHhh
Confidence 789999 68986656 88999876 9999999999999999999 99999998 9999988765322 233456
Q ss_pred Ccccc-ccCCCCCCccHHHHHHh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
.++|+ |++.+.+..++..++.+
T Consensus 78 ~i~~v~q~~~~~~~~tv~e~l~~ 100 (303)
T TIGR01288 78 AIGVVPQFDNLDPEFTVRENLLV 100 (303)
T ss_pred cEEEEeccccCCcCCcHHHHHHH
Confidence 78999 98888777888888765
No 361
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.04 E-value=2.9e-10 Score=126.73 Aligned_cols=89 Identities=19% Similarity=0.352 Sum_probs=72.6
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+ ...+
T Consensus 12 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l----~Gl~~p~~--G~i~~~g~~~-----~~~~ 80 (257)
T PRK11247 12 PLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLL----AGLETPSA--GELLAGTAPL-----AEAR 80 (257)
T ss_pred cEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--eEEEECCEEH-----HHhh
Confidence 4889999 58986656 88888875 9999999999999999999 99999998 9998876543 1234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..++|+ |++.+++..++..++.+.+
T Consensus 81 ~~i~~v~q~~~l~~~~tv~enl~~~~ 106 (257)
T PRK11247 81 EDTRLMFQDARLLPWKKVIDNVGLGL 106 (257)
T ss_pred CceEEEecCccCCCCCcHHHHHHhcc
Confidence 568899 8887777778888887644
No 362
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.04 E-value=5.9e-10 Score=125.64 Aligned_cols=62 Identities=15% Similarity=0.283 Sum_probs=55.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|||++|||.+++..+| |+++.|..
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~----d~v~~l~~ 225 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVS----DMTAFFNV 225 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC----CEEEEEec
Confidence 58999999999999999999999999999988 1123579999999999999999 99999973
No 363
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=3.1e-10 Score=132.93 Aligned_cols=93 Identities=14% Similarity=0.235 Sum_probs=78.2
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++... .+++|++. +++|+|||||||||||++| +|..+|.+ |.|+++|..+.... ..+
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~I----aGl~~p~~--G~I~i~g~~i~~~~--~~~ 90 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRML----AGFEQPTA--GQIMLDGVDLSHVP--PYQ 90 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--eEEEECCEECCCCC--HHH
Confidence 3889999 68976555 78888875 9999999999999999999 99999998 99999987664321 235
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 91 r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 91 RPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 679999 99999999999999988764
No 364
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=3e-10 Score=119.12 Aligned_cols=89 Identities=17% Similarity=0.291 Sum_probs=69.5
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ .+|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+.... ...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l----~G~~~~~~--G~i~~~g~~~~~~~-~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKII----LGLLKPDS--GEIKVLGKDIKKEP-EEVKR 73 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--eEEEECCEEcccch-Hhhhc
Confidence 356777 47765445 78888875 9999999999999999999 99999998 99999887663322 33456
Q ss_pred Ccccc-ccCCCCCCccHHHHHH
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVK 102 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~ 102 (1491)
+++|+ |++.+++..++..++.
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK 95 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh
Confidence 78999 8887777777777764
No 365
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2.5e-10 Score=120.35 Aligned_cols=91 Identities=14% Similarity=0.268 Sum_probs=69.3
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc--HHHh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD--EASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~--~~~~ 79 (1491)
|+++|+ .+|++..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.... ....
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCI----AGLEEPDS--GSILIDGEDLTDLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEccccchhHHHH
Confidence 357787 47876555 88888875 9999999999999999999 99999998 99999887653221 2334
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
...++|+ |.+.+.+..++..++.+
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheee
Confidence 5678888 88776666677666544
No 366
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.04 E-value=4.5e-10 Score=125.04 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=55.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||++|||.+++. .| |+++.|++|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~----d~v~~l~~G 212 (237)
T cd03252 143 QRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NA----DRIIVMEKG 212 (237)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hC----CEEEEEECC
Confidence 67999999999999999999999999999987 1124789999999999985 58 999999887
No 367
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.03 E-value=3.3e-10 Score=127.23 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=73.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.|+ ++|++... .+++|++. +++|+||||||||||+++| +|..+|.+ |.++++|..+..........
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~p~~--G~i~~~g~~~~~~~~~~~~~ 76 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRAL----SGELSPDS--GEVRLNGRPLADWSPAELAR 76 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--CEEEECCEEcccCCHHHhhh
Confidence 678898 58876556 88888875 9999999999999999999 99999998 99999887653322233345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 77 ~i~~~~q~~~~~~~~tv~e~l~~~ 100 (258)
T PRK13548 77 RRAVLPQHSSLSFPFTVEEVVAMG 100 (258)
T ss_pred heEEEccCCcCCCCCCHHHHHHhh
Confidence 68898 888776677888887664
No 368
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.03 E-value=5.1e-10 Score=140.28 Aligned_cols=63 Identities=25% Similarity=0.458 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||++|+.+|++|||||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~----d~i~~l~~g 236 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVA----GWILELDRG 236 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc----CeEEEEeCC
Confidence 68999999999999999999999999999998 2333469999999999999999 999999876
No 369
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4.6e-10 Score=124.96 Aligned_cols=119 Identities=19% Similarity=0.180 Sum_probs=86.4
Q ss_pred CcccceeEEEEe--c---cccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--K---NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ . +.+.+|..++.......+ | ..++|+||++.+++ .+..+++.+.
T Consensus 38 sGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~--------~-----~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~ 103 (236)
T cd03253 38 SGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSL--------R-----RAIGVVPQDTVLFN-DTIGYNIRYGRPDAT 103 (236)
T ss_pred CCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHH--------H-----hhEEEECCCChhhc-chHHHHHhhcCCCCC
Confidence 356677766665 2 235666665543321111 1 24899999998775 4666654210
Q ss_pred ---------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H
Q psy9513 1242 ---------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S 1276 (1491)
Q Consensus 1242 ---------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~ 1276 (1491)
.+ +++|++||+||+.+|++|+|||||+|||+.+. .
T Consensus 104 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 183 (236)
T cd03253 104 DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV 183 (236)
T ss_pred HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence 01 57999999999999999999999999999987 2
Q ss_pred hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. |.|+|++||+.+++.. | |+++.|++|
T Consensus 184 ~~-~~tiii~sh~~~~~~~-~----d~~~~l~~g 211 (236)
T cd03253 184 SK-GRTTIVIAHRLSTIVN-A----DKIIVLKDG 211 (236)
T ss_pred cC-CCEEEEEcCCHHHHHh-C----CEEEEEECC
Confidence 33 8899999999999965 8 999999877
No 370
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.03 E-value=3.2e-10 Score=126.43 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=74.5
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~ 79 (1491)
.|++.|+ ++|++..+ .+++|+++ +++|+||||||||||+++| .|..+|.+ |.+.++|..+..... ...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~ 76 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMV----VGIVPRDA--GNIIIDDEDISLLPLHARA 76 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEECCCCCHHHHH
Confidence 3889999 58876555 88888875 9999999999999999999 99999998 999999876643222 234
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+.+++|+ |++.+.+..++..++.+.
T Consensus 77 ~~~i~~~~q~~~~~~~~tv~enl~~~ 102 (241)
T PRK10895 77 RRGIGYLPQEASIFRRLSVYDNLMAV 102 (241)
T ss_pred HhCeEEeccCCcccccCcHHHHHhhh
Confidence 5678999 888777777888887654
No 371
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.03 E-value=2.7e-10 Score=112.05 Aligned_cols=91 Identities=18% Similarity=0.270 Sum_probs=76.1
Q ss_pred ceeeeccc-ccCCCC--c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGIR-NFPADK--N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~~-~~~~~~--~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.+.+.+|. +|.+.. . .++++++. +++++||+|||||||++.+ .|..+|.. |.|.++|..+.++..
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~----AGf~~P~~--G~i~l~~r~i~gPga-- 74 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLI----AGFVTPSR--GSIQLNGRRIEGPGA-- 74 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHH----hcCcCccc--ceEEECCEeccCCCc--
Confidence 47778884 898776 4 88888875 9999999999999999999 99999998 999999988865432
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhccc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQCTC 107 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~~~ 107 (1491)
.-+.| |++.+.++.++..+|.+.+.-
T Consensus 75 ---ergvVFQ~~~LlPWl~~~dNvafgL~l 101 (259)
T COG4525 75 ---ERGVVFQNEALLPWLNVIDNVAFGLQL 101 (259)
T ss_pred ---cceeEeccCccchhhHHHHHHHHHHHh
Confidence 22556 899999999999999998873
No 372
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.03 E-value=5.5e-10 Score=139.63 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=57.7
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||++||+.+. ... .|.|||+||||++++..+| |+++.|.+|
T Consensus 161 e~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~----dri~~l~~G 233 (529)
T PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLA----DRVAVMQNG 233 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhc----CEEEEEECC
Confidence 68999999999999999999999999999998 222 4899999999999999999 999999887
No 373
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.03 E-value=3.1e-10 Score=131.48 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=73.4
Q ss_pred cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh----hcCcc
Q psy9513 13 RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA----SSGKN 84 (1491)
Q Consensus 13 ~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~ 84 (1491)
|.|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+........ ++.++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L----~Gl~~p~~--G~I~i~G~~i~~~~~~~~~~~rr~~i~ 74 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRML----NRLIEPTA--GQIFIDGENIMKQSPVELREVRRKKIG 74 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHH----hCCCCCCc--eEEEECCEECCcCCHHHHHHHHhCcEE
Confidence 35666556 88999886 9999999999999999999 99999998 999999987754333322 56899
Q ss_pred cc-ccCCCCCCccHHHHHHhhcc
Q psy9513 85 FV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 85 ~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
|+ |.+.+++..++..+|.+...
T Consensus 75 ~v~Q~~~l~~~~TV~eNi~~~~~ 97 (363)
T TIGR01186 75 MVFQQFALFPHMTILQNTSLGPE 97 (363)
T ss_pred EEECCCcCCCCCCHHHHHHHHHH
Confidence 99 99999999999999987653
No 374
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.03 E-value=5.2e-10 Score=139.86 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=57.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ... .|.|||+||||++++..+| |++++|.+|
T Consensus 430 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~----d~i~~l~~G 502 (529)
T PRK15134 430 QRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALC----HQVIVLRQG 502 (529)
T ss_pred HHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhc----CeEEEEECC
Confidence 68999999999999999999999999999988 223 3789999999999999999 999999877
No 375
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.6e-10 Score=128.22 Aligned_cols=92 Identities=17% Similarity=0.356 Sum_probs=72.5
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+..........
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~~ 76 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCF----ARLLTPQS--GTVFLGDKPISMLSSRQLAR 76 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHH----hCCcCCCC--cEEEECCEEhHHCCHHHHhh
Confidence 789999 58886556 88888875 9999999999999999999 99999998 99999886653222223345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 77 ~i~~~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 77 RLALLPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred heEEecccCCCCCCccHHHHHHhc
Confidence 68899 887777666787777653
No 376
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=3.8e-10 Score=132.34 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=76.2
Q ss_pred ceeeecc-cccCCCC------------------------c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 6 QLHIMGI-RNFPADK------------------------N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~------------------------~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.|+++|+ +.||+.. . .+++|+++ +++|+||||||||||+++| +|.++
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I----~Gl~~ 79 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLL----NRLIE 79 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHH----HcCCC
Confidence 3778887 6787654 3 78888876 9999999999999999999 99999
Q ss_pred CCCCCCceEeeCCCCCCCcHH----HhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 57 QGASSGKNFVHDPRIGKKDEA----SASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 57 ~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
|.+ |.|+++|..+...... ..+..++|+ |++.+++..++..++.+.+.
T Consensus 80 p~s--G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~ 132 (400)
T PRK10070 80 PTR--GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132 (400)
T ss_pred CCC--CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHH
Confidence 998 9999998776432221 123578999 99888888899999887653
No 377
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.03 E-value=5.5e-10 Score=139.47 Aligned_cols=89 Identities=19% Similarity=0.325 Sum_probs=74.2
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-------------------------------------HHH---hhhHHHHHHHhhcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-------------------------------------VRI---VRDHKALAETFSRN 1257 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-------------------------------------~~l---~~~~~~~a~~~~~~ 1257 (1491)
.+||+||++.+++.+++.+++.+ ..+ ++||++||+||+.+
T Consensus 366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~ 445 (520)
T TIGR03269 366 YIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKE 445 (520)
T ss_pred hEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 48999999887777766655421 111 68999999999999
Q ss_pred CCeeEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1258 CGIFALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1258 ~~~l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|||||||+|||+.+. . ...|.|||+||||++++..+| |++++|.+|
T Consensus 446 p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~----d~i~~l~~G 504 (520)
T TIGR03269 446 PRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVC----DRAALMRDG 504 (520)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 999999999999999998 2 234899999999999999999 999999876
No 378
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4e-10 Score=127.10 Aligned_cols=47 Identities=34% Similarity=0.591 Sum_probs=41.4
Q ss_pred ccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 4 ~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
|..|.|+||++|.. ..++|+.++++|+||||||||||++||.|+++|
T Consensus 1 l~~l~i~nfr~~~~---~~~~~~~~~~~i~G~NGsGKS~ll~Ai~~~~~~ 47 (270)
T cd03242 1 LKSLELRNFRNYAE---LELEFEPGVTVLVGENAQGKTNLLEAISLLATG 47 (270)
T ss_pred CcEEEEeCCcCcce---eEEecCCCeEEEECCCCCCHHHHHHHHHHhccC
Confidence 35789999999963 468899899999999999999999999999965
No 379
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.8e-10 Score=139.34 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 410 ~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~----d~v~~l~~G 481 (506)
T PRK13549 410 NQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLS----DRVLVMHEG 481 (506)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 3345899999999999999999 999999877
No 380
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=4.2e-10 Score=124.68 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=74.1
Q ss_pred ceeeecc-cccCC----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH
Q psy9513 6 QLHIMGI-RNFPA----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE 76 (1491)
Q Consensus 6 ~l~i~~~-~~~~~----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~ 76 (1491)
.|.++|+ ++|++ ..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.++++|..+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLL----GGLDTPTS--GDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEEcCcCCH
Confidence 4889999 58864 234 88888876 9999999999999999999 99999998 999999876643221
Q ss_pred H----HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 A----SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 ~----~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
. ..+..++|+ |++.+++..++..++.+.+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 112 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL 112 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHH
Confidence 1 123578999 9887777778988887754
No 381
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.03 E-value=2.4e-10 Score=126.33 Aligned_cols=92 Identities=15% Similarity=0.284 Sum_probs=71.8
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCC-----CCCCCCCceEeeCCCCCCCc-
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEY-----PQGASSGKNFVHDPRIGKKD- 75 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~-----~~~~~~g~~~~~~~~~~~~~- 75 (1491)
|+++|+ .+|++..+ .+++|+++ +++|+||||||||||+++| +|.. +|.+ |.+.++|..+....
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~~~~~~--G~i~~~g~~~~~~~~ 74 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL----NRLNDLIPGAPDE--GEVLLDGKDIYDLDV 74 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----HhhcccccCCCCC--eEEEECCEEhhhcch
Confidence 467888 58876556 88888875 9999999999999999999 9999 8887 99999887663221
Q ss_pred -HHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 76 -EASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 76 -~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
....+..++|+ |++.++ ..++..++.+.+
T Consensus 75 ~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~ 105 (227)
T cd03260 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGL 105 (227)
T ss_pred HHHHHHhhEEEEecCchhc-cccHHHHHHhHH
Confidence 22345678999 887776 678888877654
No 382
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=4e-10 Score=125.25 Aligned_cols=120 Identities=21% Similarity=0.202 Sum_probs=86.8
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+++.++.+.....+ ...++|+||++.+++ +++.+++.++
T Consensus 39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-------------~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~ 104 (234)
T cd03251 39 SGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASL-------------RRQIGLVSQDVFLFN-DTVAENIAYGRPGAT 104 (234)
T ss_pred CCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHH-------------HhhEEEeCCCCeecc-ccHHHHhhccCCCCC
Confidence 456777777766 22 25566655533211110 125899999988775 4666654210
Q ss_pred ---------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hh
Q psy9513 1242 ---------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SD 1277 (1491)
Q Consensus 1242 ---------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~ 1277 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~ 184 (234)
T cd03251 105 REEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184 (234)
T ss_pred HHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 00 58999999999999999999999999999987 12
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..+.|||++|||.+++.. | |+++.|.+|
T Consensus 185 ~~~~tii~~sh~~~~~~~-~----d~v~~l~~G 212 (234)
T cd03251 185 MKNRTTFVIAHRLSTIEN-A----DRIVVLEDG 212 (234)
T ss_pred cCCCEEEEEecCHHHHhh-C----CEEEEecCC
Confidence 247899999999999976 8 999999887
No 383
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.03 E-value=8e-10 Score=124.04 Aligned_cols=63 Identities=22% Similarity=0.335 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ... .|.|||++||+.+++..+| |+++.|.+|
T Consensus 145 q~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~----d~v~~l~~G 217 (254)
T PRK10418 145 MLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLA----DDVAVMSHG 217 (254)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999886 223 3789999999999999999 999999877
No 384
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.02 E-value=7.5e-10 Score=124.52 Aligned_cols=63 Identities=19% Similarity=0.302 Sum_probs=57.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHH-hccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENL-TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~-~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||++|||.+++..+ | |+++.|.+|
T Consensus 156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~----d~i~~l~~G 228 (252)
T CHL00131 156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKP----DYVHVMQNG 228 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhC----CEEEEEeCC
Confidence 68999999999999999999999999999988 234589999999999999886 8 999999876
No 385
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.02 E-value=3.6e-10 Score=132.78 Aligned_cols=93 Identities=15% Similarity=0.287 Sum_probs=76.6
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+..... ..
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~i----aGl~~p~~--G~I~~~g~~i~~~~~--~~ 74 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMI----AGLEDITS--GDLFIGEKRMNDVPP--AE 74 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--eEEEECCEECCCCCH--hH
Confidence 4889999 68986555 78888875 9999999999999999999 99999998 999999876633211 23
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..++.+.+.
T Consensus 75 ~~i~~v~Q~~~l~~~~tv~eni~~~~~ 101 (369)
T PRK11000 75 RGVGMVFQSYALYPHLSVAENMSFGLK 101 (369)
T ss_pred CCEEEEeCCcccCCCCCHHHHHHhHHh
Confidence 578999 99988888899999987653
No 386
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.02 E-value=3.7e-10 Score=123.58 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=72.8
Q ss_pred eeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 7 LHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 7 l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
|.++|+ ++|+ +..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+..... .
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~ 75 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLL----YGALTPSR--GQVRIAGEDVNRLRGRQLP 75 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEcccCCHHHHH
Confidence 678888 5884 4445 88888875 9999999999999999999 99999998 999998876643111 1
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+++..++..++.+.+
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (214)
T TIGR02673 76 LLRRRIGVVFQDFRLLPDRTVYENVALPL 104 (214)
T ss_pred HHHhheEEEecChhhccCCcHHHHHHHHH
Confidence 234678999 8888777788888887653
No 387
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.02 E-value=5.5e-10 Score=115.65 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=61.3
Q ss_pred ceeeecc-cccCCCC----c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC-c
Q psy9513 6 QLHIMGI-RNFPADK----N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK-D 75 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~----~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~-~ 75 (1491)
.|+++|+ ..|++.. + .+|+|++. +++|+||+|||||||.++| .|..+|.+ |.|.++|..+... .
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l----~Gl~~p~~--G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLL----AGLEKPSS--GSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHH----hcccCCCC--ceEEECCcccCcccc
Confidence 3889999 6888777 6 88999986 9999999999999999999 99999998 9999999766331 1
Q ss_pred HHHhhcCcccc-ccC
Q psy9513 76 EASASSGKNFV-HDP 89 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~ 89 (1491)
....++.+.++ |+|
T Consensus 77 ~~~~~~~VQmVFQDp 91 (252)
T COG1124 77 AKAFYRPVQMVFQDP 91 (252)
T ss_pred chhhccceeEEecCC
Confidence 11333445555 555
No 388
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=3.3e-10 Score=127.92 Aligned_cols=93 Identities=13% Similarity=0.289 Sum_probs=73.9
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|.++|+ .+|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+........+
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~ 84 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML----GRHQPPSE--GEILLDAQPLESWSSKAFA 84 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHH----cCCCCCCC--CEEEECCEehhhCCHHHHh
Confidence 4889999 58876555 88888875 9999999999999999999 99999998 9999998765322233345
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..++|+ |++.+.+..++..++.+.
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 85 RKVAYLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred hheEEeccCCCCCCCccHHHHHHhC
Confidence 678999 887777777888887653
No 389
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.02 E-value=4.8e-10 Score=139.66 Aligned_cols=63 Identities=10% Similarity=0.170 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |+++.|.+|
T Consensus 414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~----d~i~~l~~G 485 (510)
T PRK09700 414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVC----DRIAVFCEG 485 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999988 2345899999999999999999 999999877
No 390
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.02 E-value=4.8e-10 Score=142.79 Aligned_cols=87 Identities=20% Similarity=0.308 Sum_probs=73.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------HH----------------------------------hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------RI----------------------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------~l----------------------------------~~~~~~~a~~~~~ 1256 (1491)
+++||||+|.++.+ |..+|+.+. ++ +|||++|||||+.
T Consensus 424 ~i~~v~Q~~~LF~~-TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~ 502 (588)
T PRK11174 424 HLSWVGQNPQLPHG-TLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQ 502 (588)
T ss_pred heEEecCCCcCCCc-CHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhc
Confidence 59999999999877 777776331 00 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||++||+.+. ....+.|+|+|||++..+.. + |+++++++|
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-a----D~Iivl~~G 559 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-W----DQIWVMQDG 559 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-C----CEEEEEeCC
Confidence 9999999999999999998 12357899999999988765 6 999999877
No 391
>PRK13409 putative ATPase RIL; Provisional
Probab=99.02 E-value=6.3e-10 Score=138.36 Aligned_cols=88 Identities=18% Similarity=0.271 Sum_probs=72.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH----------------------------HH---hhhHHHHHHHhhcCCCeeEEcCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV----------------------------RI---VRDHKALAETFSRNCGIFALDEP 1266 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~----------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp 1266 (1491)
.++|+||++.++..+++.+++.+. .| ++||++||+||+.+|++|+||||
T Consensus 401 ~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP 480 (590)
T PRK13409 401 KISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480 (590)
T ss_pred eEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 578888888777777777664221 01 68999999999999999999999
Q ss_pred CCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1267 TTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1267 ~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|+|||+.+. . ...|.|+|+||||++++..+| |+++++..
T Consensus 481 t~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~a----Drvivl~~ 529 (590)
T PRK13409 481 SAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYIS----DRLMVFEG 529 (590)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEcC
Confidence 999999998 2 224889999999999999999 99999954
No 392
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.02 E-value=4.1e-10 Score=127.31 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=75.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
.|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+..... .
T Consensus 7 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~i~~~~~~~~~ 80 (269)
T PRK11831 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLI----GGQIAPDH--GEILFDGENIPAMSRSRLY 80 (269)
T ss_pred eEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEccccChhhHH
Confidence 4889999 58876555 88899876 9999999999999999999 99999998 999999876633111 1
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+.+..++..++.+.+
T Consensus 81 ~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 109 (269)
T PRK11831 81 TVRKRMSMLFQSGALFTDMNVFDNVAYPL 109 (269)
T ss_pred HHhhcEEEEecccccCCCCCHHHHHHHHH
Confidence 234578999 8887777778888887654
No 393
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.02 E-value=2.7e-10 Score=148.20 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=91.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
.++||=++++++ .| .+.+|+.++.......+ | .++||+||++.++.+ |..+|+.++
T Consensus 516 sGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l-----r--------~~i~~v~Q~~~lf~g-Ti~eNi~l~~~~~~ 581 (710)
T TIGR03796 516 SGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVL-----A--------NSVAMVDQDIFLFEG-TVRDNLTLWDPTIP 581 (710)
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH-----H--------hheeEEecCChhhhc-cHHHHhhCCCCCCC
Confidence 346666666665 22 36777776665554333 1 369999999999876 777775321
Q ss_pred --HH----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------Hhhc
Q psy9513 1242 --RI----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQK 1279 (1491)
Q Consensus 1242 --~l----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~ 1279 (1491)
.+ +|||++|||||+.+|++|+|||||++||+.+. ....
T Consensus 582 ~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~ 661 (710)
T TIGR03796 582 DADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR 661 (710)
T ss_pred HHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhc
Confidence 00 69999999999999999999999999999887 3446
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+.|+|+|||++..+.. | |++++|++|
T Consensus 662 ~~T~IiitHrl~~i~~-~----D~Iivl~~G 687 (710)
T TIGR03796 662 GCTCIIVAHRLSTIRD-C----DEIIVLERG 687 (710)
T ss_pred CCEEEEEecCHHHHHh-C----CEEEEEeCC
Confidence 8999999999988765 7 999999887
No 394
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.02 E-value=5.7e-10 Score=125.54 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=56.9
Q ss_pred hhhHHHHHHHhh---------cCCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceE
Q psy9513 1244 VRDHKALAETFS---------RNCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYV 1304 (1491)
Q Consensus 1244 ~~~~~~~a~~~~---------~~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~ 1304 (1491)
++||++||+||+ .+|++|+|||||+|||+.+. .... |.|+|+||||.+++..+| |++
T Consensus 150 ~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~----d~i 225 (272)
T PRK13547 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA----DRI 225 (272)
T ss_pred HHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC----CEE
Confidence 689999999999 49999999999999999988 2233 789999999999999999 999
Q ss_pred EEEecC
Q psy9513 1305 VRIVRD 1310 (1491)
Q Consensus 1305 ~~l~~~ 1310 (1491)
+.|.+|
T Consensus 226 ~~l~~G 231 (272)
T PRK13547 226 AMLADG 231 (272)
T ss_pred EEEECC
Confidence 999877
No 395
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.02 E-value=5e-10 Score=139.01 Aligned_cols=63 Identities=16% Similarity=0.279 Sum_probs=58.7
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 401 q~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~----d~i~~l~~g 472 (501)
T PRK11288 401 NQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVA----DRIVVMREG 472 (501)
T ss_pred HHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999998 3455899999999999999999 999999877
No 396
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=4.1e-10 Score=131.18 Aligned_cols=93 Identities=20% Similarity=0.335 Sum_probs=74.9
Q ss_pred eeeecc-cccC----CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFP----ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~----~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|+++|+ ++|+ ...+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.....
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L----~Gl~~p~~--G~I~~~g~~i~~~~~~ 75 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCI----NLLERPTS--GRVLVDGQDLTALSEK 75 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--eEEEECCEECCcCCHH
Confidence 678888 5886 2344 88888876 9999999999999999999 99999998 999999877643221
Q ss_pred --HHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 --ASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 --~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
...+..++|+ |++.+++..++..++.+..
T Consensus 76 ~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 76 ELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred HHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 2235679999 9988888889999887754
No 397
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=3.8e-10 Score=126.66 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=74.5
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCC-----CCCCCceEeeCCCCCCCc
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQ-----GASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~-----~~~~g~~~~~~~~~~~~~ 75 (1491)
.|.+.|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+| .+ |.|.++|..+....
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~~~~~~--G~i~~~g~~i~~~~ 76 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF----NRLIELYPEARVS--GEVYLDGQDIFKMD 76 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHH----hccCCCCCCCCCc--eEEEECCEECCcCC
Confidence 4889999 58876555 88888875 9999999999999999999 999875 45 99999987664322
Q ss_pred HHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 76 EASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
....+.+++|+ |++.+.+..++..++.+.+
T Consensus 77 ~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 107 (250)
T PRK14247 77 VIELRRRVQMVFQIPNPIPNLSIFENVALGL 107 (250)
T ss_pred HHHHhccEEEEeccCccCCCCcHHHHHHHHH
Confidence 33445678999 8887777788988887654
No 398
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.01 E-value=6.3e-10 Score=122.85 Aligned_cols=62 Identities=23% Similarity=0.320 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++.. | |+++.|+.|
T Consensus 155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~----d~i~~l~~g 224 (226)
T cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-A----DQILVLDGG 224 (226)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-C----CEEEEecCC
Confidence 68999999999999999999999999999988 11236899999999999964 8 999999766
No 399
>PRK10908 cell division protein FtsE; Provisional
Probab=99.01 E-value=4.2e-10 Score=123.75 Aligned_cols=93 Identities=15% Similarity=0.268 Sum_probs=72.6
Q ss_pred eeeecc-ccc-CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 7 LHIMGI-RNF-PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 7 l~i~~~-~~~-~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
|.++|+ ++| ++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.|.++|..+..... .
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~i~~~~~~~~~ 75 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLI----CGIERPSA--GKIWFSGHDITRLKNREVP 75 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEcccCChhHHH
Confidence 678888 588 54445 88888875 9999999999999999999 99999998 999998876532111 1
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+.+..++..++.+..
T Consensus 76 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 104 (222)
T PRK10908 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPL 104 (222)
T ss_pred HHHhheEEEecCccccccccHHHHHHhHH
Confidence 235678999 8887777788888887643
No 400
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.01 E-value=5e-10 Score=139.24 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=58.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 408 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~----d~v~~l~~G 479 (500)
T TIGR02633 408 NQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLS----DRVLVIGEG 479 (500)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 3345899999999999999999 999999876
No 401
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.01 E-value=3.7e-10 Score=126.35 Aligned_cols=92 Identities=15% Similarity=0.305 Sum_probs=72.2
Q ss_pred eeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 7 LHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 7 l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
|.+.|+ .+|+ +..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+..... .
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~ 75 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI----NRLVEPSS--GSILLEGTDITKLRGKKLR 75 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCcCCCc--cEEEECCEEhhhCCHHHHH
Confidence 668888 5887 5445 88888875 9999999999999999999 99999998 999999876532111 1
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..+..++|+ |++.+.+..++..++.+.
T Consensus 76 ~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 76 KLRRRIGMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred HHHhheEEEcCCCcccccccHHHHHhhc
Confidence 235678999 888777777888887654
No 402
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.01 E-value=5.5e-10 Score=124.75 Aligned_cols=93 Identities=23% Similarity=0.307 Sum_probs=74.5
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-HHhh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-ASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-~~~~ 80 (1491)
|.+.|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+..... ...+
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~~~~~~~~~~~~ 76 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVI----TGKTRPDE--GSVLFGGTDLTGLPEHQIAR 76 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--CeEEECCeecCCCCHHHHHh
Confidence 678898 58876555 88888875 9999999999999999999 99999998 999999876633222 2334
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+++|+ |++.+++..++..++.+.+
T Consensus 77 ~~i~~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 77 AGIGRKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred cCeeEeccccccCCCCCHHHHHHHhh
Confidence 578999 9888888888988887643
No 403
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.01 E-value=9.3e-10 Score=123.52 Aligned_cols=63 Identities=16% Similarity=0.361 Sum_probs=56.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++..+| ++++.+.+|
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~----~~i~~l~~G 221 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVS----KYTSFFLNG 221 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhc----CEEEEEECC
Confidence 68999999999999999999999999999987 1134789999999999999999 999999877
No 404
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.01 E-value=3.8e-10 Score=127.43 Aligned_cols=94 Identities=15% Similarity=0.279 Sum_probs=74.6
Q ss_pred cceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 5 DQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 5 ~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
..|.+.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+........
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~~~ 79 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTL----SRLMTPAH--GHVWLDGEHIQHYASKEV 79 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHH----cCCCCCCC--cEEEECCEEhhhCCHHHH
Confidence 35889999 58976555 88888875 9999999999999999999 99999998 999998876633223333
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
...++|+ |++.+.+..++..++.+.
T Consensus 80 ~~~i~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 80 ARRIGLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred hhheEEeeccCcCCCCCcHHHHHHhC
Confidence 4578999 888777777888777653
No 405
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=5.3e-10 Score=126.04 Aligned_cols=94 Identities=20% Similarity=0.288 Sum_probs=75.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-HHHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-EASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-~~~~ 79 (1491)
.|.+.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.+||.+ |.|.++|..+.... ....
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~~~~~ 78 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCL----TGFYKPTG--GTILLRGQHIEGLPGHQIA 78 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHH----hCCcCCCc--ceEEECCEECCCCCHHHHH
Confidence 4889999 58876555 88888875 9999999999999999999 99999998 99999987664322 2233
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+.+++|+ |++.+++..++..++.+..
T Consensus 79 ~~~i~~~~q~~~~~~~~tv~enl~~~~ 105 (255)
T PRK11300 79 RMGVVRTFQHVRLFREMTVIENLLVAQ 105 (255)
T ss_pred hcCeEEeccCcccCCCCcHHHHHHHhh
Confidence 4568888 8888888888988887643
No 406
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=99.00 E-value=5.4e-10 Score=121.70 Aligned_cols=48 Identities=38% Similarity=0.695 Sum_probs=39.7
Q ss_pred ceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 6 QLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 6 ~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
+|+|+||++|. ..+|+|++++++|+||||||||||++||.|||+|..+
T Consensus 1 ~i~i~nf~~~~---~~~i~f~~g~~vi~G~Ng~GKStil~ai~~~L~~~~~ 48 (202)
T PF13476_consen 1 KIHIKNFRSFK---DLEIDFSPGLNVIYGPNGSGKSTILEAIRYALGGQSS 48 (202)
T ss_dssp EEEEEEETTEE---EEEEE--SEEEEEEESTTSSHHHHHHHHHHHHHSS-T
T ss_pred CEEEEEeCCCc---ceEEEcCCCcEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 47899998884 3568998889999999999999999999999998653
No 407
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.00 E-value=3.1e-10 Score=110.49 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=70.2
Q ss_pred eeeeccc-ccCCCCc-ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 7 LHIMGIR-NFPADKN-RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 7 l~i~~~~-~~~~~~~-~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
|.+.+++ +|+...- -++.|..+ +++|+||+|||||||++.| .|...|.+ |.+.++|.++.+..+ ..+-+
T Consensus 2 l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLI----AGF~~P~~--G~i~i~g~d~t~~~P--~~RPV 73 (231)
T COG3840 2 LALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLI----AGFETPAS--GEILINGVDHTASPP--AERPV 73 (231)
T ss_pred ccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHH----HhccCCCC--ceEEEcCeecCcCCc--ccCCh
Confidence 4456664 7863222 33333334 9999999999999999999 99999998 999999988854222 23445
Q ss_pred ccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 84 NFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 84 ~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+++ |+.+++...+|..+|.+...
T Consensus 74 SmlFQEnNLFaHLtV~qNigLGl~ 97 (231)
T COG3840 74 SMLFQENNLFAHLTVAQNIGLGLS 97 (231)
T ss_pred hhhhhccccchhhhhhhhhcccCC
Confidence 667 99999999999999998875
No 408
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=5e-10 Score=126.77 Aligned_cols=94 Identities=19% Similarity=0.277 Sum_probs=72.8
Q ss_pred ceeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|.+.|+ ++|+ +..+ .+|+|++. +++|+||||||||||+++| .|.++|.+ |.|+++|..+........
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~ 77 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHL----NGIYLPQR--GRVKVMGREVNAENEKWV 77 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCc--eEEEECCEECCCCCHHHH
Confidence 3889999 5885 3445 88888875 9999999999999999999 99999998 999999876643333344
Q ss_pred hcCcccc-ccCC-CCCCccHHHHHHhhc
Q psy9513 80 SSGKNFV-HDPR-IGKKDETHAIVKLQC 105 (1491)
Q Consensus 80 ~~~~~~~-q~~~-~~~~~~~~~~v~~~~ 105 (1491)
...++|+ |++. .....++..++.+.+
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~ 105 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGP 105 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhH
Confidence 5678999 8763 334568888887643
No 409
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.00 E-value=4.9e-10 Score=124.14 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=71.6
Q ss_pred eeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|.+.|+ .+|++. .+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAI----LGLLKPTS--GSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEccccchh
Confidence 567888 588654 44 78888875 9999999999999999999 99999998 999999876643221
Q ss_pred --HHhhcCcccc-ccC--CCCCCccHHHHHHhhc
Q psy9513 77 --ASASSGKNFV-HDP--RIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 --~~~~~~~~~~-q~~--~~~~~~~~~~~v~~~~ 105 (1491)
...+..++|+ |++ .+.+..++..++.+.+
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~ 109 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPL 109 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHH
Confidence 2345678999 887 3555678888876643
No 410
>KOG0055|consensus
Probab=99.00 E-value=4.3e-10 Score=142.01 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=87.5
Q ss_pred cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHHH-----------------------
Q psy9513 1187 IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRI----------------------- 1243 (1491)
Q Consensus 1187 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~l----------------------- 1243 (1491)
+-+|+.++..+..+.| |+ ++|+++|.| ++...+..+|+.+...
T Consensus 410 V~idG~di~~~~~~~l--------r~-----~iglV~QeP-vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~l 475 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWL--------RS-----QIGLVSQEP-VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKL 475 (1228)
T ss_pred EEEcCccchhcchHHH--------Hh-----hcCeeeech-hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhh
Confidence 6777777777766555 33 799999999 6667788888754220
Q ss_pred ------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHh
Q psy9513 1244 ------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLT 1297 (1491)
Q Consensus 1244 ------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~ 1297 (1491)
++||+||||||+.+|++|+|||||++||+.+. ....|.|.|+|+|++..+.. +
T Consensus 476 p~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-a 554 (1228)
T KOG0055|consen 476 PDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-A 554 (1228)
T ss_pred HHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-c
Confidence 69999999999999999999999999999987 34568999999999999988 6
Q ss_pred ccccceEEEEecC
Q psy9513 1298 AIDRAYVVRIVRD 1310 (1491)
Q Consensus 1298 ~~~~~~~~~l~~~ 1310 (1491)
|+++++++|
T Consensus 555 ----D~I~v~~~G 563 (1228)
T KOG0055|consen 555 ----DKIAVMEEG 563 (1228)
T ss_pred ----CEEEEEECC
Confidence 999999998
No 411
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.00 E-value=7.1e-10 Score=137.64 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|.+|
T Consensus 400 ekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~----d~v~~l~~G 471 (501)
T PRK10762 400 NQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMS----DRILVMHEG 471 (501)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC----CEEEEEECC
Confidence 68999999999999999999999999999988 3345889999999999999999 999999877
No 412
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.00 E-value=1.2e-09 Score=122.17 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=57.7
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+++|++||+||+.+|++|+|||||+|||+.+. ....|.|+|++|||.+++..+| |+++.|.+|
T Consensus 148 q~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~----d~i~~l~~G 219 (264)
T PRK13546 148 MRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFC----TKIAWIEGG 219 (264)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHc----CEEEEEECC
Confidence 79999999999999999999999999999876 3345889999999999999999 999999877
No 413
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.00 E-value=4.3e-10 Score=122.72 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=68.1
Q ss_pred eecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 9 IMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 9 i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
++|+ ++|++ ..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+........+.
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 75 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLL----NGLLGPTS--GEVLVDGKDLTKLSLKELRR 75 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHH----hcCCCCCC--ceEEECCEEcccCCHHHHHh
Confidence 5566 47865 445 88888875 9999999999999999999 99999998 99999887663322233456
Q ss_pred Ccccc-ccCCC-CCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRI-GKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~-~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.. .+..++..++.+.
T Consensus 76 ~i~~~~q~~~~~~~~~t~~~~l~~~ 100 (211)
T cd03225 76 KVGLVFQNPDDQFFGPTVEEEVAFG 100 (211)
T ss_pred hceEEecChhhhcCCCcHHHHHHHH
Confidence 78898 87642 4456787777654
No 414
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.00 E-value=3.8e-10 Score=123.34 Aligned_cols=90 Identities=12% Similarity=0.253 Sum_probs=71.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ .+|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+..... ...
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~v~~~g~~~~~~~~--~~~ 72 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMI----AGLEEPTS--GRIYIGGRDVTDLPP--KDR 72 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECCcCCc--ccc
Confidence 457788 47876555 88888875 9999999999999999999 99999998 999998876632111 125
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 73 ~i~~~~q~~~~~~~~tv~~~l~~~ 96 (213)
T cd03301 73 DIAMVFQNYALYPHMTVYDNIAFG 96 (213)
T ss_pred eEEEEecChhhccCCCHHHHHHHH
Confidence 68898 888777777888888764
No 415
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.00 E-value=6.7e-10 Score=137.85 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.+||+||||++++..+| |+++.|.+|
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~----d~i~~l~~G 479 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMA----DRVLVMHQG 479 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC----CEEEEEECC
Confidence 78999999999999999999999999999998 2345899999999999999999 999999876
No 416
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.00 E-value=5.1e-10 Score=122.56 Aligned_cols=93 Identities=16% Similarity=0.274 Sum_probs=72.5
Q ss_pred eeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH---H
Q psy9513 7 LHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE---A 77 (1491)
Q Consensus 7 l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~---~ 77 (1491)
|.++|+ ++|++ ... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+..... .
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~i~~~~~~~~~ 74 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLI----YKEELPTS--GTIRVNGQDVSDLRGRAIP 74 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEEcccCCHHHHH
Confidence 457788 57854 345 88888875 9999999999999999999 99999998 999998876633111 2
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+++..++..++.+.+
T Consensus 75 ~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 75 YLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred HHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 345678999 9888888788888887654
No 417
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.00 E-value=4.3e-10 Score=143.21 Aligned_cols=120 Identities=21% Similarity=0.249 Sum_probs=89.9
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR---- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~---- 1242 (1491)
..+||=++++++ .| .+.+|+.++.......+ ..+++||||++.++++ |..+|+.+..
T Consensus 378 sGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l-------------~~~i~~v~Q~~~lF~~-Ti~~NI~~~~~~~d 443 (592)
T PRK10790 378 SGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL-------------RQGVAMVQQDPVVLAD-TFLANVTLGRDISE 443 (592)
T ss_pred CCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHH-------------HhheEEEccCCccccc-hHHHHHHhCCCCCH
Confidence 345555555555 22 25666666665544333 1368999999999987 7776653210
Q ss_pred --H----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhh
Q psy9513 1243 --I----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQ 1278 (1491)
Q Consensus 1243 --l----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~ 1278 (1491)
+ +|||++|||||+.+|++|+|||||++||+.+. ...
T Consensus 444 ~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~ 523 (592)
T PRK10790 444 EQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR 523 (592)
T ss_pred HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 0 68999999999999999999999999999997 123
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+|+|||+++.+.. | |++++|++|
T Consensus 524 ~~~tvIivtHr~~~l~~-~----D~ii~l~~G 550 (592)
T PRK10790 524 EHTTLVVIAHRLSTIVE-A----DTILVLHRG 550 (592)
T ss_pred CCCEEEEEecchHHHHh-C----CEEEEEECC
Confidence 47899999999988775 6 999999887
No 418
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.00 E-value=4.1e-10 Score=143.11 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=87.5
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
++||=++++++ .| .+.+|+.+++......+ ...++|+||+|.++.+ +..+|+.+.
T Consensus 373 GKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~-------------r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~d 438 (588)
T PRK13657 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASL-------------RRNIAVVFQDAGLFNR-SIEDNIRVGRPDATD 438 (588)
T ss_pred CHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH-------------HhheEEEecCcccccc-cHHHHHhcCCCCCCH
Confidence 45555555555 22 25566666665544333 1258999999998876 666664211
Q ss_pred -H----------------H------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhh
Q psy9513 1242 -R----------------I------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQ 1278 (1491)
Q Consensus 1242 -~----------------l------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~ 1278 (1491)
. + ++||++|||||+.+|++|+|||||++||+.+. ...
T Consensus 439 ~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~ 518 (588)
T PRK13657 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM 518 (588)
T ss_pred HHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh
Confidence 0 0 68999999999999999999999999999988 122
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+|+|||+...+. .+ |+++.|++|
T Consensus 519 ~~~tvIiitHr~~~~~-~~----D~ii~l~~G 545 (588)
T PRK13657 519 KGRTTFIIAHRLSTVR-NA----DRILVFDNG 545 (588)
T ss_pred cCCEEEEEEecHHHHH-hC----CEEEEEECC
Confidence 4789999999998775 47 999999877
No 419
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.00 E-value=4.9e-10 Score=120.63 Aligned_cols=91 Identities=13% Similarity=0.163 Sum_probs=70.8
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+.... ...+.
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~-~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRIL----AGLLRPDS--GEVRWNGTALAEQR-DEPHR 73 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--cEEEECCEEcccch-HHhhh
Confidence 457777 47876555 88888875 9999999999999999999 99999998 99999887653321 22345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |.+.+.+..++..++.+.
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~l~~~ 97 (198)
T TIGR01189 74 NILYLGHLPGLKPELSALENLHFW 97 (198)
T ss_pred heEEeccCcccccCCcHHHHHHHH
Confidence 67888 877776667888887764
No 420
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=8.8e-10 Score=137.84 Aligned_cols=63 Identities=30% Similarity=0.479 Sum_probs=58.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||.+++..+| |+++.|.+|
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~----d~i~~l~~g 228 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVC----THMADLDYG 228 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc----ceEEEEeCC
Confidence 79999999999999999999999999999998 3445889999999999999999 999999876
No 421
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.00 E-value=5.2e-10 Score=123.08 Aligned_cols=93 Identities=14% Similarity=0.225 Sum_probs=71.9
Q ss_pred eeeecc-cccCC----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-
Q psy9513 7 LHIMGI-RNFPA----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE- 76 (1491)
Q Consensus 7 l~i~~~-~~~~~----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~- 76 (1491)
|.++|+ ++|++ ... .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLL----GGLDNPTS--GEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEEhhhcCHh
Confidence 568888 58864 234 78888875 9999999999999999999 99999998 999999876633111
Q ss_pred H--H-hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 77 A--S-ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 ~--~-~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
. . ....++|+ |++.+++..++..++.+.+
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 108 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL 108 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHH
Confidence 1 1 22578999 9888777788888887643
No 422
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.00 E-value=8.1e-10 Score=150.30 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=76.6
Q ss_pred ceeeecc-cccC--CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFP--ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~--~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ +.|+ +..+ .+++|.+. +++|+||||||||||+++| +|..+|.+ |.+.++|..+.. ....
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiL----aGLl~Pts--G~I~i~G~dI~~-~~~~ 1000 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSIL----TGLLPPTS--GTVLVGGKDIET-NLDA 1000 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHH----hcCCCCCc--eEEEECCEECcc-hHHH
Confidence 4889999 6895 3345 88888875 9999999999999999999 99999998 999999977632 2234
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+.+..++..++.+..
T Consensus 1001 ~r~~IG~~pQ~~~L~~~LTV~E~L~f~~ 1028 (2272)
T TIGR01257 1001 VRQSLGMCPQHNILFHHLTVAEHILFYA 1028 (2272)
T ss_pred HhhcEEEEecCCcCCCCCCHHHHHHHHH
Confidence 55679999 9988888889999988754
No 423
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.00 E-value=5.7e-10 Score=117.01 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=66.7
Q ss_pred eeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 7 LHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|+++|+ .+|++ ... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+........
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLI----LGLLRPTS--GRVRLDGADISQWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHH----HhccCCCC--CeEEECCEEcccCCHHHH
Confidence 357787 47864 234 88888875 9999999999999999999 99999998 999998876643223344
Q ss_pred hcCcccc-ccCCCCCCccHHHHH
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v 101 (1491)
+..++|+ |++.+++ .++..++
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~~~l 96 (173)
T cd03246 75 GDHVGYLPQDDELFS-GSIAENI 96 (173)
T ss_pred HhheEEECCCCcccc-CcHHHHC
Confidence 5678888 8876655 3666655
No 424
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.99 E-value=5.2e-10 Score=125.22 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=72.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCC-----CCCCceEeeCCCCCC--C
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQG-----ASSGKNFVHDPRIGK--K 74 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~-----~~~g~~~~~~~~~~~--~ 74 (1491)
|+++|+ .+|++... .+++|+++ +++|+||||||||||+++| +|.++|. + |.+.++|..+.. .
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~p~~~~~~~--G~i~~~g~~~~~~~~ 75 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL----NRMNDLVPGVRIE--GKVLFDGQDIYDKKI 75 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHH----hccCCCCcCCCCc--eEEEECCEEcccccc
Confidence 678888 58876555 88888876 9999999999999999999 9999887 7 999998876632 1
Q ss_pred cHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 75 DEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 75 ~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.....+.+++|+ |++.+++ .++..++.+.+
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~ 106 (247)
T TIGR00972 76 DVVELRRRVGMVFQKPNPFP-MSIYDNIAYGP 106 (247)
T ss_pred chHHHHhheEEEecCcccCC-CCHHHHHHhHH
Confidence 122345678999 8887777 88888887654
No 425
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.99 E-value=5.4e-10 Score=130.10 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=78.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+++|++. +++|+|||||||||||++| +|..+|.+..|.+.++|..+.... ...
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i----aGl~~p~~~~G~i~~~g~~~~~~~--~~~ 78 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAI----AGFVKAAGLTGRIAIADRDLTHAP--PHK 78 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCCCCEEEEECCEECCCCC--HHH
Confidence 5889999 69986555 88888875 9999999999999999999 999988744489999887663311 134
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~ 105 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLR 105 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHH
Confidence 678999 99999999999999988764
No 426
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=3.7e-10 Score=123.96 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=70.0
Q ss_pred eeeecc-cccCC----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 7 LHIMGI-RNFPA----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
|.+.|+ ++|++ ..+ .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~---- 70 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRII----AGLERPTS--GEVLVDGEPVTG---- 70 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECcc----
Confidence 457788 58875 345 78888865 9999999999999999999 99999988 999998866521
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
....++|+ |.+.+.+..++..++.+.+
T Consensus 71 -~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 98 (220)
T cd03293 71 -PGPDRGYVFQQDALLPWLTVLDNVALGL 98 (220)
T ss_pred -ccCcEEEEecccccccCCCHHHHHHHHH
Confidence 23568899 8887777778888887654
No 427
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=4.9e-10 Score=121.17 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=72.0
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ ++|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+... ....+.
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~p~~--G~v~~~g~~~~~~-~~~~~~ 74 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRIL----AGLARPDA--GEVLWQGEPIRRQ-RDEYHQ 74 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEEcccc-hHHhhh
Confidence 567888 58876555 88888875 9999999999999999999 99999998 9999988665321 122345
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.++|+ |.+.+.+..++..++.+..
T Consensus 75 ~~~~~~~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 75 DLLYLGHQPGIKTELTALENLRFYQ 99 (204)
T ss_pred heEEeCCccccCcCCcHHHHHHHHH
Confidence 67888 7777777778888887654
No 428
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.99 E-value=7.6e-10 Score=121.38 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||.+++..+| |+++.+.+|
T Consensus 147 ~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~----d~i~~l~~G 218 (224)
T cd03220 147 MKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLC----DRALVLEKG 218 (224)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 79999999999999999999999999999876 2345789999999999999999 999999876
No 429
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.99 E-value=7.5e-10 Score=121.83 Aligned_cols=62 Identities=23% Similarity=0.342 Sum_probs=55.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....+.|+|++|||.+++.. | |+++.|.+|
T Consensus 144 ~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~----d~i~~l~~g 213 (221)
T cd03244 144 QRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S----DRILVLDKG 213 (221)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C----CEEEEEECC
Confidence 68999999999999999999999999999987 12246899999999999875 8 999999876
No 430
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.99 E-value=5.7e-10 Score=123.89 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=71.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ .+|++... .+++|++. +++|+||||||||||+++| +|..+|.+ |.|.++|..+..... ....
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~i~~~~~-~~~~ 74 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLL----TRLYVAQE--GQISVAGHDLRRAPR-AALA 74 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCcCCCc--eEEEECCEEcccCCh-hhhh
Confidence 668888 48876555 88888875 9999999999999999999 99999998 999998866532222 2224
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 75 ~i~~~~q~~~~~~~~t~~~~l~~~ 98 (236)
T TIGR03864 75 RLGVVFQQPTLDLDLSVRQNLRYH 98 (236)
T ss_pred hEEEeCCCCCCcccCcHHHHHHHH
Confidence 68898 888777777888887654
No 431
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.99 E-value=1.3e-09 Score=123.23 Aligned_cols=63 Identities=17% Similarity=0.349 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++++|||||+|||+.+. ....+.|+|+||||.+++..+| |++++|..|
T Consensus 166 ~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~----d~i~~l~~G 236 (265)
T PRK14252 166 QQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVS----DYTAYMYMG 236 (265)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999988 1123689999999999999999 999999876
No 432
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.99 E-value=9.2e-10 Score=149.80 Aligned_cols=89 Identities=18% Similarity=0.265 Sum_probs=78.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-H------------H-----------------------hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-R------------I-----------------------VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-~------------l-----------------------~~~~~~~a~~~~~~~~~l 1261 (1491)
.+||+||++.+++.|++.+|+.++ + + |+||++||+||+.+|++|
T Consensus 1004 ~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVL 1083 (2272)
T TIGR01257 1004 SLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVV 1083 (2272)
T ss_pred cEEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 599999999999999999987331 1 0 689999999999999999
Q ss_pred EEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|||||+|||+.++ ....|.+||++|||++++..+| |++++|.+|
T Consensus 1084 LLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~la----DrI~iL~~G 1136 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLG----DRIAIISQG 1136 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 99999999999988 2235889999999999999999 999999887
No 433
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.99 E-value=4e-10 Score=145.79 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=72.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH------HH----------------------------------hhhHHHHHHHhhcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV------RI----------------------------------VRDHKALAETFSRN 1257 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~------~l----------------------------------~~~~~~~a~~~~~~ 1257 (1491)
++||+|||+.++.+ |..+|+.++ ++ +|||++|||||+.+
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~ 606 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRK 606 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcC
Confidence 59999999999876 666665221 00 69999999999999
Q ss_pred CCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1258 CGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1258 ~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|+|||||++||+.+. ....+.|+|+|||++..+.. + |++++|++|
T Consensus 607 p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~----D~Iivl~~G 660 (686)
T TIGR03797 607 PRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-A----DRIYVLDAG 660 (686)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-C----CEEEEEECC
Confidence 999999999999999987 33336899999999988765 6 999999887
No 434
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=6.2e-10 Score=126.22 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=74.6
Q ss_pred CCcccceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC
Q psy9513 1 MALLDQLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK 73 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~ 73 (1491)
||. ..|+++|+ ..|++ ..+ .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+..
T Consensus 1 ~~~-~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i----~G~~~p~~--G~i~~~g~~i~~ 73 (279)
T PRK13635 1 MKE-EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL----NGLLLPEA--GTITVGGMVLSE 73 (279)
T ss_pred CCC-ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCC--cEEEECCEECCc
Confidence 443 24889999 58864 235 88888875 9999999999999999999 99999998 999999977644
Q ss_pred CcHHHhhcCcccc-ccCC-CCCCccHHHHHHhh
Q psy9513 74 KDEASASSGKNFV-HDPR-IGKKDETHAIVKLQ 104 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~-~~~~~~~~~~v~~~ 104 (1491)
.........++|+ |++. .....++..++.+.
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~ 106 (279)
T PRK13635 74 ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106 (279)
T ss_pred CcHHHHhhheEEEEeCHHHhcccccHHHHHhhh
Confidence 3333445678999 8863 45556888887664
No 435
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=6e-10 Score=121.51 Aligned_cols=90 Identities=16% Similarity=0.215 Sum_probs=69.6
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
|.++|+ ++|++.. .+++|++. +++|+||||||||||+++| +|..+|.+ |.++++|..+..... .+..
T Consensus 1 i~~~~l~~~~~~~~-~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~gl~~~~~--G~i~~~g~~~~~~~~--~~~~ 71 (211)
T cd03298 1 VRLDKIRFSYGEQP-MHFDLTFAQGEITAIVGPSGSGKSTLLNLI----AGFETPQS--GRVLINGVDVTAAPP--ADRP 71 (211)
T ss_pred CEEEeEEEEeCCEe-cceEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEEcCcCCH--hHcc
Confidence 357777 5786433 36777764 9999999999999999999 99999998 999998876633211 2357
Q ss_pred cccc-ccCCCCCCccHHHHHHhhc
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
++|+ |++.+++..++..++.+.+
T Consensus 72 i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 72 VSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred EEEEecccccCCCCcHHHHHhccc
Confidence 8899 9888777778888877654
No 436
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.98 E-value=6.5e-10 Score=119.82 Aligned_cols=91 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ....+.
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~-~~~~~~ 73 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRIL----AGLSPPLA--GRVLLNGGPLDFQ-RDSIAR 73 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEecccc-cHHhhh
Confidence 457788 57876555 78888875 9999999999999999999 99999998 9999988665322 123456
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+++|+ |.+.+.+..++..++.+.
T Consensus 74 ~i~~~~q~~~~~~~~tv~e~l~~~ 97 (201)
T cd03231 74 GLLYLGHAPGIKTTLSVLENLRFW 97 (201)
T ss_pred heEEeccccccCCCcCHHHHHHhh
Confidence 78888 887777777888887663
No 437
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.98 E-value=6e-10 Score=124.16 Aligned_cols=92 Identities=16% Similarity=0.291 Sum_probs=73.0
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC--cHHHh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK--DEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~--~~~~~ 79 (1491)
|+++|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+... .....
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 75 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI----NKLEEITS--GDLIVDGLKVNDPKVDERLI 75 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECCcCChhHHHH
Confidence 678888 58876555 88888875 9999999999999999999 99999998 9999998766321 12234
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+.+++|+ |++.+.+..++..++.+.
T Consensus 76 ~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 76 RQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred hhceEEEecccccCCCCcHHHHHHhH
Confidence 5678999 888777777888887654
No 438
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.98 E-value=5.9e-10 Score=116.66 Aligned_cols=88 Identities=18% Similarity=0.324 Sum_probs=65.4
Q ss_pred eeeecc-cccCCC--Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 7 LHIMGI-RNFPAD--KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~--~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|+++|+ +.|++. .. .+++|+++ +++|+||||||||||+++| +|..+|.+ |.++++|..+........
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLL----LRLYDPTS--GEILIDGVDLRDLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHH----HcCCCCCC--CEEEECCEEhhhcCHHHH
Confidence 457788 578754 44 78888875 9999999999999999999 99999998 999998876532222333
Q ss_pred hcCcccc-ccCCCCCCccHHHHH
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v 101 (1491)
+..++|+ |++.+++ .++..++
T Consensus 75 ~~~i~~~~~~~~~~~-~t~~e~l 96 (171)
T cd03228 75 RKNIAYVPQDPFLFS-GTIRENI 96 (171)
T ss_pred HhhEEEEcCCchhcc-chHHHHh
Confidence 4567888 7765554 4555554
No 439
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=7.8e-10 Score=125.19 Aligned_cols=97 Identities=21% Similarity=0.234 Sum_probs=73.3
Q ss_pred Ccccceeeecc-cccCCC--Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC
Q psy9513 2 ALLDQLHIMGI-RNFPAD--KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK 74 (1491)
Q Consensus 2 ~~~~~l~i~~~-~~~~~~--~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~ 74 (1491)
|....|++.|+ ++|++. .. .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+...
T Consensus 3 ~~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i----~Gl~~~~~--G~i~~~g~~~~~~ 76 (269)
T PRK13648 3 DKNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLM----IGIEKVKS--GEIFYNNQAITDD 76 (269)
T ss_pred CCCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEECCcC
Confidence 34446899999 588653 24 88888875 9999999999999999999 99999998 9999999766433
Q ss_pred cHHHhhcCcccc-ccCC-CCCCccHHHHHHhh
Q psy9513 75 DEASASSGKNFV-HDPR-IGKKDETHAIVKLQ 104 (1491)
Q Consensus 75 ~~~~~~~~~~~~-q~~~-~~~~~~~~~~v~~~ 104 (1491)
.....+..++|+ |++. ..+..++..++.+.
T Consensus 77 ~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~ 108 (269)
T PRK13648 77 NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108 (269)
T ss_pred CHHHHHhheeEEEeChHHhcccccHHHHHHhh
Confidence 333455678999 8764 44455666666554
No 440
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.98 E-value=6.3e-10 Score=120.56 Aligned_cols=88 Identities=17% Similarity=0.209 Sum_probs=70.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+.. .. .+.
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~--~~-~~~ 73 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLI----AGLLPPAA--GTIKLDGGDIDD--PD-VAE 73 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEeCcc--hh-hHh
Confidence 788999 58876555 88898875 9999999999999999999 99999998 999998865421 11 455
Q ss_pred Ccccc-ccCCCCCCccHHHHHHh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
+++|+ |.+.+.+..++..++.+
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~ 96 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEF 96 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHH
Confidence 67888 77766667788888765
No 441
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=7.2e-10 Score=125.81 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=73.4
Q ss_pred ceeeecc-cccCC---CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGI-RNFPA---DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~---~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|.+.|+ .+|++ ... .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~i~~~~~~ 77 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLI----DGLLEAES--GQIIIDGDLLTEENVW 77 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCEECCcCcHH
Confidence 3889999 58863 224 88888875 9999999999999999999 99999998 9999999777433333
Q ss_pred HhhcCcccc-ccCC-CCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPR-IGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~-~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++. .....++..++.+..
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (279)
T PRK13650 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFGL 107 (279)
T ss_pred HHHhhceEEEcChHHhcccccHHHHHHhhH
Confidence 455678999 8763 455668888887643
No 442
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.98 E-value=5.4e-10 Score=144.76 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=88.6
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH-----
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR----- 1242 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~----- 1242 (1491)
++||=++++++ .| .+.+|+.++.......+ | .+++|+||++.++.+ |..+|+.+..
T Consensus 503 GKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~l-----r--------~~i~~v~Q~~~lf~~-TI~eNi~~~~~~~~~ 568 (694)
T TIGR03375 503 GKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL-----R--------RNIGYVPQDPRLFYG-TLRDNIALGAPYADD 568 (694)
T ss_pred CHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHH-----H--------hccEEECCChhhhhh-hHHHHHhCCCCCCCH
Confidence 44555555544 22 25566666655544333 1 359999999999886 7777763210
Q ss_pred ------------------H------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhh
Q psy9513 1243 ------------------I------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQ 1278 (1491)
Q Consensus 1243 ------------------l------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~ 1278 (1491)
+ +|||++|||||+.+|++++|||||++||+.+. ...
T Consensus 569 ~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~ 648 (694)
T TIGR03375 569 EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL 648 (694)
T ss_pred HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 0 69999999999999999999999999999987 223
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+|+|||+++.+. .| |++++|++|
T Consensus 649 ~~~T~iiItHrl~~~~-~~----D~iivl~~G 675 (694)
T TIGR03375 649 AGKTLVLVTHRTSLLD-LV----DRIIVMDNG 675 (694)
T ss_pred CCCEEEEEecCHHHHH-hC----CEEEEEeCC
Confidence 5789999999998875 57 999999887
No 443
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.98 E-value=7.5e-10 Score=124.53 Aligned_cols=98 Identities=17% Similarity=0.273 Sum_probs=74.7
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCC-----CCCCCCceEeeCCC
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYP-----QGASSGKNFVHDPR 70 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~-----~~~~~g~~~~~~~~ 70 (1491)
|.....|.++|+ .+|++... .+++|++. +++|+||||||||||+++| +|..+ |.+ |.+.++|..
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~~~~~~--G~i~~~g~~ 74 (253)
T PRK14242 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCL----NRMNDLIPGARVE--GEILLDGEN 74 (253)
T ss_pred CCCCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHH----HhhcccCCCCCCc--eEEEECCEE
Confidence 555567999999 58876555 88888875 9999999999999999999 88753 455 999999876
Q ss_pred CCC--CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 71 IGK--KDEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 71 ~~~--~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+.. ......+.+++|+ |++.+++ .++..++.+.+
T Consensus 75 i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~ 111 (253)
T PRK14242 75 IYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGL 111 (253)
T ss_pred ccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHH
Confidence 632 1122345679999 8887766 48888887654
No 444
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.98 E-value=6.3e-10 Score=125.19 Aligned_cols=92 Identities=16% Similarity=0.240 Sum_probs=70.3
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCC--------CCCCceEeeCCCCCC
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQG--------ASSGKNFVHDPRIGK 73 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~--------~~~g~~~~~~~~~~~ 73 (1491)
|+++|+ ++|++..+ .+++|++. +++|+||||||||||+++| .|.++|. + |.+.++|..+..
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l----aG~~~p~~~~~~~~~~--G~i~~~g~~~~~ 75 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKAL----AGDLTGGGAPRGARVT--GDVTLNGEPLAA 75 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCcccccccCCc--eEEEECCEEccc
Confidence 678888 58876555 88888875 9999999999999999999 9999987 6 999998876633
Q ss_pred CcHHHhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 74 KDEASASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.........++|+ |++......++..++.+.
T Consensus 76 ~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 76 IDAPRLARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred CCHHHHHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 2223334457888 876655557788877654
No 445
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.97 E-value=5.5e-10 Score=126.19 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=72.4
Q ss_pred eeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH----H
Q psy9513 8 HIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA----S 78 (1491)
Q Consensus 8 ~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~----~ 78 (1491)
.+.|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.++++|..+...... .
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L----~Gl~~p~~--G~i~i~g~~~~~~~~~~~~~~ 99 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCI----NRLIEPTS--GKVLIDGQDIAAMSRKELREL 99 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--eEEEECCEEccccChhhhhhh
Confidence 45577 58887666 88888875 9999999999999999999 99999998 9999998766331111 1
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
....++|+ |++.+++..++..++.+.+
T Consensus 100 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 127 (269)
T cd03294 100 RRKKISMVFQSFALLPHRTVLENVAFGL 127 (269)
T ss_pred hcCcEEEEecCcccCCCCcHHHHHHHHH
Confidence 23568999 9888887788988887654
No 446
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.97 E-value=7.2e-10 Score=124.49 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=73.0
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc------
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD------ 75 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~------ 75 (1491)
|+++|+ .+|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+....
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 77 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCI----NLLEQPEA--GTIRVGDITIDTARSLSQQK 77 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--eEEEECCEEccccccccchh
Confidence 889999 58876555 88888875 9999999999999999999 99999998 99999887653211
Q ss_pred --HHHhhcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 76 --EASASSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 76 --~~~~~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
....+.+++|+ |++.+.+..++..++.+
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 108 (250)
T PRK11264 78 GLIRQLRQHVGFVFQNFNLFPHRTVLENIIE 108 (250)
T ss_pred hHHHHhhhhEEEEecCcccCCCCCHHHHHHH
Confidence 12345678999 98887777888888765
No 447
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.97 E-value=7.2e-10 Score=118.56 Aligned_cols=49 Identities=24% Similarity=0.409 Sum_probs=44.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHH
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEF 1292 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~ 1292 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.+||+||||+++
T Consensus 132 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 132 EKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 68999999999999999999999999999988 23458899999999875
No 448
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=8.3e-10 Score=123.50 Aligned_cols=87 Identities=17% Similarity=0.317 Sum_probs=69.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|+++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ..
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~-----~~ 70 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLI----AGFVPYQH--GSITLDGKPVEGP-----GA 70 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEECCCC-----CC
Confidence 678888 58876555 88888875 9999999999999999999 99999998 9999988765321 12
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 71 ~~~~v~q~~~~~~~~tv~e~l~~~ 94 (255)
T PRK11248 71 ERGVVFQNEGLLPWRNVQDNVAFG 94 (255)
T ss_pred cEEEEeCCCccCCCCcHHHHHHhH
Confidence 46888 888777777888887654
No 449
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.97 E-value=8.7e-10 Score=121.89 Aligned_cols=93 Identities=15% Similarity=0.184 Sum_probs=72.4
Q ss_pred ceeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH
Q psy9513 6 QLHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE 76 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~ 76 (1491)
.|.++|+ ++|++. .. .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i----~Gl~~p~~--G~i~~~g~~~~~~~~ 79 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAIL----AGLDDGSS--GEVSLVGQPLHQMDE 79 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHH----HcCCCCCC--eeEEECCEEcccCCH
Confidence 4889999 588642 24 77788775 9999999999999999999 99999998 999998876633221
Q ss_pred H----HhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 77 A----SASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 77 ~----~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
. ....+++|+ |++.+.+..++..++.+.
T Consensus 80 ~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~ 112 (228)
T PRK10584 80 EARAKLRAKHVGFVFQSFMLIPTLNALENVELP 112 (228)
T ss_pred HHHHHHHhheEEEEEcccccCCCcCHHHHHHHH
Confidence 1 123578999 888777777888887764
No 450
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.97 E-value=7e-10 Score=127.56 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=68.4
Q ss_pred ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCcccc-cc
Q psy9513 14 NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFV-HD 88 (1491)
Q Consensus 14 ~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-q~ 88 (1491)
+|++..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+... ....+..++|+ |+
T Consensus 2 ~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~-~~~~~~~i~~~~q~ 74 (302)
T TIGR01188 2 VYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRML----TTLLRPTS--GTARVAGYDVVRE-PRKVRRSIGIVPQY 74 (302)
T ss_pred eeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEcccC-HHHHHhhcEEecCC
Confidence 5665555 88888875 9999999999999999999 99999998 9999998766332 23345678999 98
Q ss_pred CCCCCCccHHHHHHhh
Q psy9513 89 PRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 89 ~~~~~~~~~~~~v~~~ 104 (1491)
+.+.+..++..++.+.
T Consensus 75 ~~~~~~~tv~e~l~~~ 90 (302)
T TIGR01188 75 ASVDEDLTGRENLEMM 90 (302)
T ss_pred CCCCCCCcHHHHHHHH
Confidence 8888888898888764
No 451
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.97 E-value=1.3e-09 Score=136.68 Aligned_cols=63 Identities=25% Similarity=0.461 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||++|+.+|++|||||||++||+.+. ....+.+||+||||.+++..+| |+++.|.+|
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~----d~v~~l~~g 234 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVA----GWILELDRG 234 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhc----CeEEEEECC
Confidence 68999999999999999999999999999998 2333569999999999999999 999999876
No 452
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.97 E-value=7.6e-10 Score=124.49 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=72.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.|+ .+|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+........+.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLL----AGALRPDA--GTVDLAGVDLHGLSRRARAR 75 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----cCCCCCCC--CEEEECCEEcccCCHHHHhh
Confidence 567888 58876556 88888875 9999999999999999999 99999998 99999887664322333445
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+....++..++.+.
T Consensus 76 ~i~~~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 76 RVALVEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred heEEecccCccCCCCCHHHHHHhc
Confidence 68898 887666667888877653
No 453
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.3e-09 Score=136.28 Aligned_cols=63 Identities=22% Similarity=0.491 Sum_probs=57.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||++|+.+|++|+|||||+|||+.+. ....+.|||+||||.+++..+| |+++.|.+|
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~----d~i~~l~~g 511 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLA----TRIIEITPD 511 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 78999999999999999999999999999998 2333569999999999999999 999999876
No 454
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.96 E-value=1.2e-09 Score=123.05 Aligned_cols=97 Identities=25% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC-----
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR----- 70 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~----- 70 (1491)
||.-..|+++|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.|.++|..
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~ 74 (258)
T PRK11701 1 MMDQPLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNAL----SARLAPDA--GEVHYRMRDGQLRD 74 (258)
T ss_pred CCCCceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--CEEEECCccccccc
Confidence 443345999999 58876555 78888875 9999999999999999999 99999998 999999876
Q ss_pred CCCCcHHH----hhcCcccc-ccCC--CCCCccHHHHHHh
Q psy9513 71 IGKKDEAS----ASSGKNFV-HDPR--IGKKDETHAIVKL 103 (1491)
Q Consensus 71 ~~~~~~~~----~~~~~~~~-q~~~--~~~~~~~~~~v~~ 103 (1491)
+....... ...+++|+ |++. +....++..++.+
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~ 114 (258)
T PRK11701 75 LYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGE 114 (258)
T ss_pred cccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHH
Confidence 43211111 24568899 8763 3344455555543
No 455
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=6.5e-10 Score=123.58 Aligned_cols=91 Identities=20% Similarity=0.332 Sum_probs=69.7
Q ss_pred eeeecc-cccCCC--Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 7 LHIMGI-RNFPAD--KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~--~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|++.|+ ++|++. .. .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+........
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~ 74 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLI----PRFYDVDS--GRILIDGHDVRDYTLASL 74 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hccccCCC--CEEEECCEEhhhCCHHHH
Confidence 457788 588654 44 78888865 9999999999999999999 99999998 999998876533223334
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+..++|+ |++.+.+ .++..++.+.
T Consensus 75 ~~~i~~~~q~~~~~~-~tv~enl~~~ 99 (234)
T cd03251 75 RRQIGLVSQDVFLFN-DTVAENIAYG 99 (234)
T ss_pred HhhEEEeCCCCeecc-ccHHHHhhcc
Confidence 5678898 8877664 5777777653
No 456
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.96 E-value=6.9e-10 Score=124.25 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=71.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCC--CCCCCCCceEeeCCCCCCCcH-HH
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEY--PQGASSGKNFVHDPRIGKKDE-AS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~--~~~~~~g~~~~~~~~~~~~~~-~~ 78 (1491)
|+++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|.. +|.+ |.|.++|..+..... ..
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~~~--G~i~~~g~~~~~~~~~~~ 74 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTI----AGHPSYEVTS--GTILFKGQDLLELEPDER 74 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCCCc--ceEEECCEecCCCCHHHh
Confidence 467888 58875555 78888875 9999999999999999999 9985 6777 999999876643222 22
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+.+++|+ |++.+.+..++..++.+.+
T Consensus 75 ~~~~i~~v~q~~~~~~~~t~~~~~~~~~ 102 (243)
T TIGR01978 75 ARAGLFLAFQYPEEIPGVSNLEFLRSAL 102 (243)
T ss_pred hccceEeeeccccccCCcCHHHHHHHHH
Confidence 34568888 9888877778887776544
No 457
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.96 E-value=8.1e-10 Score=123.33 Aligned_cols=91 Identities=11% Similarity=0.150 Sum_probs=72.6
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC----C--c
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK----K--D 75 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~----~--~ 75 (1491)
|.+.|+ .+|++..+ .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+.. . .
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~ 76 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVL----NLLEMPRS--GTLNIAGNHFDFSKTPSDKA 76 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEecccccccchhh
Confidence 778999 58876556 88888875 9999999999999999999 99999998 999999876521 0 1
Q ss_pred HHHhhcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 76 EASASSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 76 ~~~~~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
....+.+++|+ |.+.+++..++..++.+
T Consensus 77 ~~~~~~~i~~~~q~~~~~~~~tv~e~i~~ 105 (242)
T PRK11124 77 IRELRRNVGMVFQQYNLWPHLTVQQNLIE 105 (242)
T ss_pred HHHHHhheEEEecCccccCCCcHHHHHHH
Confidence 12345678999 88887777788888764
No 458
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.96 E-value=7.7e-10 Score=119.26 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=81.3
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|+.++... . . . +| .+++|+||++.+++++++.+++.+.
T Consensus 38 sGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-~--~-----~-~~-----~~i~~~~q~~~~~~~~tv~~~~~~~~~~~~ 103 (200)
T PRK13540 38 AGKTTLLKLIAGLLNPEKGEILFERQSIKKD-L--C-----T-YQ-----KQLCFVGHRSGINPYLTLRENCLYDIHFSP 103 (200)
T ss_pred CCHHHHHHHHhcCCCCCCeeEEECCCccccC-H--H-----H-HH-----hheEEeccccccCcCCCHHHHHHHHHhcCc
Confidence 356676666666 22 256666555321 0 0 1 11 1589999999998999988876321
Q ss_pred ---HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEE
Q psy9513 1242 ---RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVI 1286 (1491)
Q Consensus 1242 ---~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~ 1286 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.|+|++
T Consensus 104 ~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~ 183 (200)
T PRK13540 104 GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLT 183 (200)
T ss_pred chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11 68999999999999999999999999999988 23458899999
Q ss_pred ccCHHHHHH
Q psy9513 1287 THDEEFIEN 1295 (1491)
Q Consensus 1287 thd~~~~~~ 1295 (1491)
||+..++..
T Consensus 184 sh~~~~~~~ 192 (200)
T PRK13540 184 SHQDLPLNK 192 (200)
T ss_pred eCCchhccc
Confidence 999988865
No 459
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.96 E-value=1.4e-09 Score=136.39 Aligned_cols=63 Identities=27% Similarity=0.419 Sum_probs=56.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.+||+||||++++..+| |+++.|+.|
T Consensus 448 e~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~----d~i~~l~~~ 516 (552)
T TIGR03719 448 ERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIA----THILAFEGD 516 (552)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999998 2232348999999999999999 999999765
No 460
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.96 E-value=6.5e-10 Score=144.41 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=88.8
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
++||=++++++ .| .+.+|+.++.......+ | .++||+||++.++.+ |..+|+.++
T Consensus 512 GKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~l--------r-----~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~~~ 577 (708)
T TIGR01193 512 GKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTL--------R-----QFINYLPQEPYIFSG-SILENLLLGAKENVS 577 (708)
T ss_pred CHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHH--------H-----HheEEEecCceehhH-HHHHHHhccCCCCCC
Confidence 45555555554 22 25666666655544333 1 269999999999987 777775321
Q ss_pred --HH----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------Hhh
Q psy9513 1242 --RI----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-------SDQ 1278 (1491)
Q Consensus 1242 --~l----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-------~~~ 1278 (1491)
++ +|||++|||||+.+|++|+|||||++||+.+. ...
T Consensus 578 ~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~ 657 (708)
T TIGR01193 578 QDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657 (708)
T ss_pred HHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence 00 69999999999999999999999999999987 222
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+|+|||+...+. .| |++++|++|
T Consensus 658 ~~~T~IiitHr~~~~~-~~----D~i~~l~~G 684 (708)
T TIGR01193 658 QDKTIIFVAHRLSVAK-QS----DKIIVLDHG 684 (708)
T ss_pred cCCEEEEEecchHHHH-cC----CEEEEEECC
Confidence 4789999999998775 57 999999887
No 461
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.96 E-value=6.8e-10 Score=120.73 Aligned_cols=90 Identities=13% Similarity=0.211 Sum_probs=69.7
Q ss_pred ecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc----HHHhh
Q psy9513 10 MGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD----EASAS 80 (1491)
Q Consensus 10 ~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~----~~~~~ 80 (1491)
+|+ +.|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.++++|..+.... .....
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~~~~ 75 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNII----GLLEKFDS--GQVYLNGKETPPLNSKKASKFRR 75 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHH----hcCCCCCC--eEEEECCEEccccchhhHHHHHH
Confidence 466 46765455 78888875 9999999999999999999 99999998 99999987642211 12345
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+++|+ |++.+++..++..++.+..
T Consensus 76 ~~i~~~~q~~~~~~~~t~~e~~~~~~ 101 (206)
T TIGR03608 76 EKLGYLFQNFALIENETVEENLDLGL 101 (206)
T ss_pred hCeeEEecchhhccCCcHHHHHHHHH
Confidence 678999 8888777788888877643
No 462
>KOG0994|consensus
Probab=98.96 E-value=0.00036 Score=85.60 Aligned_cols=98 Identities=8% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhHcCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy9513 380 THKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVE 459 (1491)
Q Consensus 380 ~~~~~i~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~i~~l~~~l~~ 459 (1491)
.+.....+.++.+.++..-++...+ ....+.++......+.+.+....+.+.. .+..+.++.+.+.-
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~sv---------s~~~i~~l~~~~~~lr~~l~~~~e~L~~----~E~~Lsdi~~~~~~ 1264 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSV---------SAEDIAQLASATESLRRQLQALTEDLPQ----EEETLSDITNSLPL 1264 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCc---------cHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhhhhhhccch
Confidence 4555555666666666665543211 1223333444444444444444433322 22344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9513 460 LESKIKSFKQQIEGNKKDLTNVITQINEVNQ 490 (1491)
Q Consensus 460 l~~~~~~~~~~l~~~~~~~~~l~~~l~~l~~ 490 (1491)
...+++.+..+...+..-..++...+..++.
T Consensus 1265 a~~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1265 AGKDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555555555555555554
No 463
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=6.7e-10 Score=123.01 Aligned_cols=91 Identities=20% Similarity=0.272 Sum_probs=69.7
Q ss_pred ceeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|++.|+ .+|++ ... .+++|+++ +++|+||||||||||+++| +|..||.+ |.++++|..+........
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~ 75 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQK--GQILIDGIDIRDISRKSL 75 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCcCCCC--CEEEECCEeHHHcCHHHH
Confidence 4778899 58864 335 88888876 9999999999999999999 99999998 999998876532222334
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
+..++|+ |++.++.. ++..++.+
T Consensus 76 ~~~i~~~~q~~~~~~~-tv~~~~~~ 99 (229)
T cd03254 76 RSMIGVVLQDTFLFSG-TIMENIRL 99 (229)
T ss_pred hhhEEEecCCchhhhh-HHHHHHhc
Confidence 5678888 88766543 67666654
No 464
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.95 E-value=1.9e-09 Score=123.87 Aligned_cols=63 Identities=16% Similarity=0.311 Sum_probs=54.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceE-EEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYV-VRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~-~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.|+|+||||++++..+| |++ +.|.+|
T Consensus 205 q~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~----d~i~~~l~~G 276 (305)
T PRK14264 205 QQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARIS----DQTAVFLTGG 276 (305)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhc----CEEEEEecCC
Confidence 68999999999999999999999999999988 1123579999999999999999 986 456666
No 465
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.95 E-value=5.9e-10 Score=141.92 Aligned_cols=87 Identities=25% Similarity=0.352 Sum_probs=71.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhH---H-----HH----------------------------------hhhHHHHHHHhh
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV---V-----RI----------------------------------VRDHKALAETFS 1255 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~---~-----~l----------------------------------~~~~~~~a~~~~ 1255 (1491)
.++|+||++.++++ |..+|+.+ . .+ +|||++|||||+
T Consensus 418 ~i~~v~Q~~~lf~~-Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 418 QVALVSQNVHLFND-TIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred hceEEccCceeecc-hHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHH
Confidence 58999999988875 55655421 0 00 689999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|+|||||++||+.+. ....+.|+|+|||+...+.. | |+++.+++|
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~-~----D~Ii~l~~g 554 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK-A----DEILVVEDG 554 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-C----CEEEEEECC
Confidence 99999999999999999987 22357899999999987654 7 999999877
No 466
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=1e-09 Score=124.30 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=72.5
Q ss_pred ceeeecc-cccC--CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFP--ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~--~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|.++|+ ++|+ +..+ .+++|++. +++|+||||||||||+++| +|..+|.+ |.|+++|..+.......
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~p~~--G~I~~~g~~i~~~~~~~ 80 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKIL----TGLLKPQS--GEIKIDGITISKENLKE 80 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--ceEEECCEecCcCCHHH
Confidence 3788999 5885 2345 88888875 9999999999999999999 99999998 99999987764322334
Q ss_pred hhcCcccc-ccCC-CCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPR-IGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~-~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++. .....++..++.+.+
T Consensus 81 ~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 109 (271)
T PRK13632 81 IRKKIGIIFQNPDNQFIGATVEDDIAFGL 109 (271)
T ss_pred HhcceEEEEeCHHHhcCcccHHHHHHhHH
Confidence 45678999 8863 445568888877643
No 467
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=1.1e-09 Score=124.22 Aligned_cols=94 Identities=17% Similarity=0.217 Sum_probs=73.8
Q ss_pred ceeeecc-cccCCC---Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGI-RNFPAD---KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~---~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|+++|+ .+|++. .. .+++|++. +++|+||||||||||+++| +|..+|.+ |.|+++|..+......
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~i~~~~~~ 77 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLI----DGLFEEFE--GKVKIDGELLTAENVW 77 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCC--CEEEECCEECCcCCHH
Confidence 3889999 588642 24 88888875 9999999999999999999 99999998 9999998776433333
Q ss_pred HhhcCcccc-ccCC-CCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPR-IGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~-~~~~~~~~~~v~~~~ 105 (1491)
..+.+++|+ |++. .....++..++.+.+
T Consensus 78 ~~~~~i~~v~q~~~~~~~~~tv~eni~~~~ 107 (277)
T PRK13642 78 NLRRKIGMVFQNPDNQFVGATVEDDVAFGM 107 (277)
T ss_pred HHhcceEEEEECHHHhhccCCHHHHHHhhH
Confidence 455788999 8864 455678888887643
No 468
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.95 E-value=5.4e-10 Score=107.05 Aligned_cols=90 Identities=12% Similarity=0.237 Sum_probs=66.4
Q ss_pred eeeeccc-ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGIR-NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~~-~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
+++.++. .-++... .+|+|.+. +.+|+||+|||||||++++ +...||.+ |.+.|.|..++.-.....+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~v----a~Lisp~~--G~l~f~Ge~vs~~~pea~Rq 77 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIV----ASLISPTS--GTLLFEGEDVSTLKPEAYRQ 77 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHH----HhccCCCC--ceEEEcCccccccChHHHHH
Confidence 4555552 2233334 88999875 9999999999999999999 88999999 99999999886655556666
Q ss_pred Ccccc-ccCCCCCCccHHHHHHh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
.++|. |.|.+++. +|..+.-|
T Consensus 78 ~VsY~~Q~paLfg~-tVeDNlif 99 (223)
T COG4619 78 QVSYCAQTPALFGD-TVEDNLIF 99 (223)
T ss_pred HHHHHHcCcccccc-chhhcccc
Confidence 77777 77765543 44444443
No 469
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.95 E-value=7.4e-10 Score=120.09 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=66.6
Q ss_pred eecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 9 IMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 9 i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
++|+ ++|++ ..+ .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+.. ...+..
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~---~~~~~~ 72 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKIL----AGLIKESS--GSILLNGKPIKA---KERRKS 72 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEEhhh---HHhhcc
Confidence 4566 47865 455 88888865 9999999999999999999 99999998 999998876521 234457
Q ss_pred cccc-ccCCC-CCCccHHHHHHhhc
Q psy9513 83 KNFV-HDPRI-GKKDETHAIVKLQC 105 (1491)
Q Consensus 83 ~~~~-q~~~~-~~~~~~~~~v~~~~ 105 (1491)
++|+ |++.. ....++..++.+.+
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~ 97 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGL 97 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhh
Confidence 8899 87642 33457878776543
No 470
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.95 E-value=1.3e-09 Score=117.05 Aligned_cols=88 Identities=18% Similarity=0.286 Sum_probs=68.2
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
|.++|+ ++|++....+++|+++ +++|+||||||||||+++| .|..+|.+ |.++++|..+... ....
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~i~~~----~~~~ 71 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMI----AGIMQPSS--GNIYYKNCNINNI----AKPY 71 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCcccChh----hhhh
Confidence 667888 5887644445888875 9999999999999999999 99999998 9999998766321 1234
Q ss_pred cccc-ccCCCCCCccHHHHHHhh
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
++|+ |.+.+.+..++..++.+.
T Consensus 72 ~~~~~~~~~~~~~~tv~~~l~~~ 94 (195)
T PRK13541 72 CTYIGHNLGLKLEMTVFENLKFW 94 (195)
T ss_pred EEeccCCcCCCccCCHHHHHHHH
Confidence 6777 776666777888887653
No 471
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.94 E-value=9.1e-10 Score=138.97 Aligned_cols=62 Identities=27% Similarity=0.393 Sum_probs=55.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++|||||+.+|++|+|||||+|||+.+. ....+.|+|+|||+.+.+.. | |+++.|++|
T Consensus 476 q~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~----d~i~~l~~G 545 (585)
T TIGR01192 476 ERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-A----DLVLFLDQG 545 (585)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-C----CEEEEEECC
Confidence 68999999999999999999999999999988 22357899999999998854 7 999999887
No 472
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=1.3e-09 Score=120.69 Aligned_cols=90 Identities=12% Similarity=0.139 Sum_probs=70.6
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
|+++|+ ++|++.. .+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+..... ...+
T Consensus 2 l~~~~l~~~~~~~~-~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~~~~--G~i~~~g~~~~~~~~--~~~~ 72 (232)
T PRK10771 2 LKLTDITWLYHHLP-MRFDLTVERGERVAILGPSGAGKSTLLNLI----AGFLTPAS--GSLTLNGQDHTTTPP--SRRP 72 (232)
T ss_pred eEEEEEEEEECCcc-ceeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCeecCcCCh--hhcc
Confidence 678888 5887432 47777765 9999999999999999999 99999998 999999876632111 2357
Q ss_pred cccc-ccCCCCCCccHHHHHHhhc
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
++|+ |++.+.+..++..++.+.+
T Consensus 73 i~~~~q~~~~~~~~tv~e~l~~~~ 96 (232)
T PRK10771 73 VSMLFQENNLFSHLTVAQNIGLGL 96 (232)
T ss_pred EEEEecccccccCCcHHHHHhccc
Confidence 8899 8887777778888887654
No 473
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.94 E-value=1.9e-09 Score=111.29 Aligned_cols=74 Identities=26% Similarity=0.335 Sum_probs=63.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEcc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITH 1288 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~th 1288 (1491)
.++|+|| +..-+++|++||++++.+|++++|||||+|||+.+. ....+.|+|++||
T Consensus 74 ~i~~~~q---------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh 138 (157)
T cd00267 74 RIGYVPQ---------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138 (157)
T ss_pred ceEEEee---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4778877 333478999999999999999999999999999888 2233689999999
Q ss_pred CHHHHHHHhccccceEEEEecC
Q psy9513 1289 DEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1289 d~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+.+++..+| |+++.+.+|
T Consensus 139 ~~~~~~~~~----d~i~~l~~g 156 (157)
T cd00267 139 DPELAELAA----DRVIVLKDG 156 (157)
T ss_pred CHHHHHHhC----CEEEEEeCc
Confidence 999999999 999998764
No 474
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.94 E-value=1.3e-09 Score=122.81 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=74.2
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCC-----CCCCCceEeeCCCCCC--
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQ-----GASSGKNFVHDPRIGK-- 73 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~-----~~~~g~~~~~~~~~~~-- 73 (1491)
.|.+.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|..+| .+ |.|.++|..+..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----aGl~~~~~~~~~~--G~I~~~g~~~~~~~ 77 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL----NRMHEVIPGARVE--GEVLLDGEDLYGPG 77 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHH----hccCCcccCCCcc--eEEEECCEeccccc
Confidence 5889999 58976555 88888875 9999999999999999999 999864 45 999998876532
Q ss_pred CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 74 KDEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
......+..++|+ |++.+.+..++..++.+.+
T Consensus 78 ~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~ 110 (258)
T PRK14241 78 VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL 110 (258)
T ss_pred cChHHHhcceEEEccccccCCCCcHHHHHHHHH
Confidence 1223445678999 8887777788888887654
No 475
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.94 E-value=1.9e-09 Score=135.17 Aligned_cols=89 Identities=22% Similarity=0.313 Sum_probs=72.7
Q ss_pred eEEEEccch-hhhhhhhhHHHHhHH--------------------------------HH---hhhHHHHHHHhhcCCCee
Q psy9513 1218 QLIVITHDE-EFIENLTAIDRAYVV--------------------------------RI---VRDHKALAETFSRNCGIF 1261 (1491)
Q Consensus 1218 ~l~~i~~~~-~~~~~L~~~~~~~~~--------------------------------~l---~~~~~~~a~~~~~~~~~l 1261 (1491)
.+||+||++ .+++.+++.+++.+. .+ ++||++||+||+.+|++|
T Consensus 388 ~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 467 (556)
T PRK11819 388 KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL 467 (556)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 589999986 677777777664210 00 689999999999999999
Q ss_pred EEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1262 ALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1262 ~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||||||+|||+.+. ....+.+||+||||++++..+| |+++.+.+|
T Consensus 468 lLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~----d~i~~l~~~ 518 (556)
T PRK11819 468 LLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIA----THILAFEGD 518 (556)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhC----CEEEEEECC
Confidence 99999999999998 2222348999999999999999 999999764
No 476
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.94 E-value=1.7e-09 Score=111.92 Aligned_cols=64 Identities=19% Similarity=0.287 Sum_probs=56.6
Q ss_pred hhhHHHHHHHhhcC--CCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCCC
Q psy9513 1244 VRDHKALAETFSRN--CGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHK 1312 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~--~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~ 1312 (1491)
+++|++||+|++.+ |++++|||||++||+.+. ....|.+||++||+.+++ ..| |+++.|.+|+.
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~----d~i~~l~~g~~ 166 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSA----DWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhC----CEEEEECCCCC
Confidence 79999999999999 999999999999999988 223589999999999987 468 99999977643
No 477
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.94 E-value=1e-09 Score=120.62 Aligned_cols=91 Identities=18% Similarity=0.299 Sum_probs=69.2
Q ss_pred ceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|++.|+ ++|++ ... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.++++|..+.......
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~~ 75 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL----AGLYKPTS--GSVLLDGTDIRQLDPAD 75 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCcCCCC--CeEEECCEEhHHCCHHH
Confidence 3678888 58864 335 88888875 9999999999999999999 99999998 99999887653222223
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
.+..++|+ |++.+++ .++..++.+
T Consensus 76 ~~~~i~~~~q~~~~~~-~tv~e~l~~ 100 (220)
T cd03245 76 LRRNIGYVPQDVTLFY-GTLRDNITL 100 (220)
T ss_pred HHhhEEEeCCCCcccc-chHHHHhhc
Confidence 45578898 8876665 467666654
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.94 E-value=1.7e-09 Score=118.55 Aligned_cols=62 Identities=21% Similarity=0.424 Sum_probs=54.0
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-----------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-----------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-----------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||++||+.+. ....|.|+|++||+.+++. .| |+++.|.+|
T Consensus 145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~----d~i~~l~~G 217 (218)
T cd03290 145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HA----DWIIAMKDG 217 (218)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hC----CEEEEecCC
Confidence 68999999999999999999999999999864 1234789999999999985 58 999998765
No 479
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.94 E-value=1.4e-09 Score=123.66 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=95.7
Q ss_pred cccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH-----
Q psy9513 1173 RRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR----- 1242 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~----- 1242 (1491)
.+||-..|+.+ +|+ +.+|++.++-..= .-+++ ..||.++|++.|++.||+.+|+....
T Consensus 42 GKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP----~dA~~--------~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~ 109 (501)
T COG3845 42 GKSTLMKILFGLYQPDSGEIRVDGKEVRIKSP----RDAIR--------LGIGMVHQHFMLVPTLTVAENIILGLEPSKG 109 (501)
T ss_pred CHHHHHHHHhCcccCCcceEEECCEEeccCCH----HHHHH--------cCCcEEeeccccccccchhhhhhhcCccccc
Confidence 45555555555 444 5666654432221 11233 48999999999999999999973311
Q ss_pred -------H---------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc
Q psy9513 1243 -------I---------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK 1279 (1491)
Q Consensus 1243 -------l---------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~ 1279 (1491)
. ++|||.|-+||+.+|++|||||||+-|-|... ....
T Consensus 110 ~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~ 189 (501)
T COG3845 110 GLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE 189 (501)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC
Confidence 0 58999999999999999999999999998887 5678
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+|||-++++..+| |++-+|.+|
T Consensus 190 G~tIi~ITHKL~Ev~~ia----DrvTVLR~G 216 (501)
T COG3845 190 GKTIIFITHKLKEVMAIA----DRVTVLRRG 216 (501)
T ss_pred CCEEEEEeccHHHHHHhh----CeeEEEeCC
Confidence 999999999999999999 999999888
No 480
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.94 E-value=1.3e-09 Score=128.64 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=58.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||++|||++++..+| |+++.|.+|
T Consensus 148 QrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~----DrIivL~~G 219 (549)
T PRK13545 148 MKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFC----TKALWLHYG 219 (549)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 89999999999999999999999999999987 2345889999999999999999 999999877
No 481
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=1.1e-09 Score=123.56 Aligned_cols=93 Identities=15% Similarity=0.290 Sum_probs=71.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCC-----CCCCCCceEeeCCCCCC--
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYP-----QGASSGKNFVHDPRIGK-- 73 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~-----~~~~~g~~~~~~~~~~~-- 73 (1491)
.|.++|+ ++|++..+ .+++|+++ +++|+||||||||||+++| +|..+ |.+ |.+.++|..+..
T Consensus 13 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~p~~p~~--G~i~~~g~~~~~~~ 86 (260)
T PRK10744 13 KIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF----NRMYELYPEQRAE--GEILLDGENILTPK 86 (260)
T ss_pred eEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHH----hcccccCCCCCcc--eEEEECCEEccccc
Confidence 4889999 58876555 88888875 9999999999999999999 99975 355 999998876532
Q ss_pred CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 74 KDEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
......+.+++|+ |++.+.+ .++..++.+.+
T Consensus 87 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~ 118 (260)
T PRK10744 87 QDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGV 118 (260)
T ss_pred cchHHHhcceEEEecCCccCc-CcHHHHHhhhH
Confidence 1223345678999 8877665 68888877644
No 482
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.93 E-value=1e-09 Score=120.70 Aligned_cols=88 Identities=16% Similarity=0.273 Sum_probs=69.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|++.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.+||.+ |.+.++|..+.. ....
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~~~~~~~----~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMI----TGILRPTS--GEIIFDGHPWTR----KDLH 70 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEeccc----cccc
Confidence 457788 57876555 88888865 9999999999999999999 99999998 999998866521 1124
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+.+..++..++.+.
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~ 94 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVH 94 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHH
Confidence 67888 887777777888887654
No 483
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.93 E-value=1e-09 Score=119.91 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=66.5
Q ss_pred eecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 9 IMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 9 i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
++|+ ++|++... .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+ . ..+.++
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l----~G~~~p~~--G~i~~~g~~~----~-~~~~~i 70 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAI----LGLLKPTS--GSIRVFGKPL----E-KERKRI 70 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHH----cCCCCCCC--CEEEECCccH----H-HHHhhe
Confidence 5667 47865445 78888875 9999999999999999999 99999998 9999988765 1 234578
Q ss_pred ccc-ccCCCC--CCccHHHHHHhhc
Q psy9513 84 NFV-HDPRIG--KKDETHAIVKLQC 105 (1491)
Q Consensus 84 ~~~-q~~~~~--~~~~~~~~v~~~~ 105 (1491)
+|+ |++.+. ...++..++.+.+
T Consensus 71 ~~v~q~~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 71 GYVPQRRSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred EEeccccccccCCCCcHHHHHHhcc
Confidence 899 887653 2357888876643
No 484
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.93 E-value=1.8e-09 Score=114.29 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=69.0
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-HHHhhc
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-EASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-~~~~~~ 81 (1491)
|+++|+ ++| ...+++|+++ +++|+||||||||||+++| +|.++|.+ |.++++|..+.... ....+.
T Consensus 5 l~~~~l~~~~---~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~~~~~~~~ 75 (182)
T cd03215 5 LEVRGLSVKG---AVRDVSFEVRAGEIVGIAGLVGNGQTELAEAL----FGLRPPAS--GEITLDGKPVTRRSPRDAIRA 75 (182)
T ss_pred EEEeccEEEe---eecceEEEEcCCcEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEECCccCHHHHHhC
Confidence 778888 466 2377777765 9999999999999999999 99999998 99999987664322 233456
Q ss_pred Ccccc-ccC---CCCCCccHHHHHHhh
Q psy9513 82 GKNFV-HDP---RIGKKDETHAIVKLQ 104 (1491)
Q Consensus 82 ~~~~~-q~~---~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++ .+.+..++..++.+.
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHH
Confidence 78898 774 456667888887664
No 485
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.93 E-value=1.2e-09 Score=123.43 Aligned_cols=93 Identities=19% Similarity=0.279 Sum_probs=72.3
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCC-----CCCCCceEeeCCCCCC--
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQ-----GASSGKNFVHDPRIGK-- 73 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~-----~~~~g~~~~~~~~~~~-- 73 (1491)
.|++.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|..+| .+ |.|+++|..+..
T Consensus 19 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~~~~~~--G~I~~~g~~i~~~~ 92 (267)
T PRK14235 19 KMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL----NRMNDTIDGCRVT--GKITLDGEDIYDPR 92 (267)
T ss_pred eEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHH----HhhcccccCCCCc--eEEEECCEECcccc
Confidence 5889999 58976555 88888875 9999999999999999999 999875 56 999999876632
Q ss_pred CcHHHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 74 KDEASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 74 ~~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
......+..++|+ |++.+++. ++..++.+.+
T Consensus 93 ~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~ 124 (267)
T PRK14235 93 LDVVELRARVGMVFQKPNPFPK-SIYENVAYGP 124 (267)
T ss_pred cchHHHhhceEEEecCCCCCCC-cHHHHHHHHH
Confidence 1122345678999 88876654 8888887644
No 486
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.93 E-value=1.3e-09 Score=122.59 Aligned_cols=93 Identities=17% Similarity=0.254 Sum_probs=74.4
Q ss_pred cceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC-----
Q psy9513 5 DQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK----- 74 (1491)
Q Consensus 5 ~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~----- 74 (1491)
..|+++|+ ..|++... .+++|+++ +++|+||||||||||+++| .|.++|.+ |.+.++|..+...
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~~~~~~~~~~ 77 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI----NFLEKPSE--GSIVVNGQTINLVRDKDG 77 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--eEEEECCEEccccccccc
Confidence 46899999 58876555 88888876 9999999999999999999 99999998 9999988655210
Q ss_pred --------cHHHhhcCcccc-ccCCCCCCccHHHHHHh
Q psy9513 75 --------DEASASSGKNFV-HDPRIGKKDETHAIVKL 103 (1491)
Q Consensus 75 --------~~~~~~~~~~~~-q~~~~~~~~~~~~~v~~ 103 (1491)
.....+.+++|+ |++.+.+..++..++.+
T Consensus 78 ~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~ 115 (257)
T PRK10619 78 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME 115 (257)
T ss_pred ccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHH
Confidence 112345678999 98887777788888765
No 487
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=1.3e-09 Score=121.83 Aligned_cols=91 Identities=14% Similarity=0.279 Sum_probs=71.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCC---CCCCCCceEeeCCCCCCCcHHH
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYP---QGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~---~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
++++|+ +.|++... .+++|++. +++|+||||||||||+++| +|.++ |.+ |.|+++|..+.......
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~~~~~~--G~i~~~g~~i~~~~~~~ 76 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCF----NRMNDKIAKID--GLVEIEGKDVKNQDVVA 76 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcccCCCCCCc--eEEEECCEecccCCHHH
Confidence 668888 58876555 88888875 9999999999999999999 99874 466 99999997764333334
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.+..++|+ |++.+++ .++..++.+.
T Consensus 77 ~~~~i~~~~q~~~l~~-~tv~eni~~~ 102 (246)
T PRK14269 77 LRKNVGMVFQQPNVFV-KSIYENISYA 102 (246)
T ss_pred HhhhEEEEecCCcccc-ccHHHHhhhH
Confidence 45678999 8887765 5888887654
No 488
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.93 E-value=1.4e-09 Score=122.09 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=72.1
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc------
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD------ 75 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~------ 75 (1491)
|+++|+ .+|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+....
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~i~~~~~~~~~~ 74 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRIL----MTLEPIDE--GQIQVEGEQLYHMPGRNGPL 74 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEEccccccccccc
Confidence 457788 47876555 88888875 9999999999999999999 99999998 99999886552110
Q ss_pred -------HHHhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 76 -------EASASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 76 -------~~~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
....+.+++|+ |++.+.+..++..++.+.
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~ 111 (252)
T TIGR03005 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEA 111 (252)
T ss_pred cccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHH
Confidence 12345678999 888888778888888763
No 489
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.93 E-value=1.8e-09 Score=116.96 Aligned_cols=84 Identities=24% Similarity=0.213 Sum_probs=67.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhH-HH--------H-----------------------hhhHHHHHHHhhcCCCeeEEcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV-VR--------I-----------------------VRDHKALAETFSRNCGIFALDE 1265 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~-~~--------l-----------------------~~~~~~~a~~~~~~~~~l~lDE 1265 (1491)
+++|++|++.+++.+++.+++.+ .. + ++||++||+||+.+|++|+|||
T Consensus 74 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 153 (207)
T PRK13539 74 ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDE 153 (207)
T ss_pred hcEEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 57899988888888887776421 00 0 6899999999999999999999
Q ss_pred CCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1266 PTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1266 p~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
||+|||+.+. ....|.|+|++|||.+++.. ++++.+
T Consensus 154 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~------~~~~~~ 198 (207)
T PRK13539 154 PTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG------ARELDL 198 (207)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc------CcEEee
Confidence 9999999988 23458999999999988775 455555
No 490
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.93 E-value=3.7e-10 Score=122.78 Aligned_cols=53 Identities=32% Similarity=0.531 Sum_probs=45.7
Q ss_pred CcccceeeecccccCCCCcceEEeecc----ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRP----LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~----~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
|.+..|.+.||++|.+ ..+|+|... +++|+||||||||||+++|.|+|+|..+
T Consensus 1 m~~~~i~l~nf~~y~~--~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~ 57 (213)
T cd03279 1 MKPLKLELKNFGPFRE--EQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTP 57 (213)
T ss_pred CEEEEEEEECCcCcCC--ceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCcc
Confidence 5677899999999873 378888764 9999999999999999999999987654
No 491
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=1.5e-09 Score=123.64 Aligned_cols=94 Identities=16% Similarity=0.239 Sum_probs=72.0
Q ss_pred ceeeecc-cccCC-----CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCC-
Q psy9513 6 QLHIMGI-RNFPA-----DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKK- 74 (1491)
Q Consensus 6 ~l~i~~~-~~~~~-----~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~- 74 (1491)
.|+++|+ ++|++ ..+ .+|+|++. +++|+||||||||||+++| +|.++|.+ |.|+++|..+...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~ 75 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHL----NGLLKPTS--GKIIIDGVDITDKK 75 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCc--cEEEECCEECCCcC
Confidence 3788898 58864 235 88888875 9999999999999999999 99999998 9999999776431
Q ss_pred -cHHHhhcCcccc-ccCC-CCCCccHHHHHHhhc
Q psy9513 75 -DEASASSGKNFV-HDPR-IGKKDETHAIVKLQC 105 (1491)
Q Consensus 75 -~~~~~~~~~~~~-q~~~-~~~~~~~~~~v~~~~ 105 (1491)
.....+..++|+ |++. .....++..+|.+..
T Consensus 76 ~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~ 109 (287)
T PRK13637 76 VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGP 109 (287)
T ss_pred ccHHHHhhceEEEecCchhccccccHHHHHHhHH
Confidence 123445688999 8864 233468888887643
No 492
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.93 E-value=1.5e-09 Score=118.43 Aligned_cols=90 Identities=13% Similarity=0.163 Sum_probs=70.1
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
++++|+ ++|++ ...+++|++. +++|+||||||||||+++| +|..+|.+ |.+.++|..+.... ..+..
T Consensus 1 ~~~~~l~~~~~~-~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l----~G~~~~~~--G~i~~~g~~~~~~~--~~~~~ 71 (213)
T TIGR01277 1 LALDKVRYEYEH-LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLI----AGFIEPAS--GSIKVNDQSHTGLA--PYQRP 71 (213)
T ss_pred CeEEeeeEEeCC-cceeeEEEEeCCcEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCEEcccCC--hhccc
Confidence 457788 47763 2256777764 9999999999999999999 99999998 99999887663211 23456
Q ss_pred cccc-ccCCCCCCccHHHHHHhhc
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
++|+ |++.+++..++..++.+.+
T Consensus 72 i~~v~q~~~~~~~~t~~en~~~~~ 95 (213)
T TIGR01277 72 VSMLFQENNLFAHLTVRQNIGLGL 95 (213)
T ss_pred eEEEeccCccCCCCcHHHHHHhHh
Confidence 8999 9888887789988887654
No 493
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.93 E-value=2.3e-09 Score=135.84 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=57.2
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+++|++||++|+.+|+||||||||+|||+.+. ....+.|||+||||++++..+| |+++.|.+|
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~----d~i~~l~~G 503 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTT----DDLYLVHDG 503 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 68999999999999999999999999999998 2233459999999999999999 999999876
No 494
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.93 E-value=2.2e-09 Score=136.56 Aligned_cols=63 Identities=25% Similarity=0.446 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEe-cC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV-RD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~-~~ 1310 (1491)
+++|++||++|+.+|++|||||||+|||+.+. ....+.|||+||||.+++..+| |+++.+. +|
T Consensus 445 ekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~----d~i~~l~~~g 514 (635)
T PRK11147 445 ERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTV----TECWIFEGNG 514 (635)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhc----CEEEEEeCCC
Confidence 68999999999999999999999999999998 3333569999999999999999 9999997 45
No 495
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.92 E-value=1.6e-09 Score=122.49 Aligned_cols=91 Identities=20% Similarity=0.379 Sum_probs=67.2
Q ss_pred eeeecc-cccCC---------CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC
Q psy9513 7 LHIMGI-RNFPA---------DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG 72 (1491)
Q Consensus 7 l~i~~~-~~~~~---------~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~ 72 (1491)
|.++|+ ++|+. ..+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+.
T Consensus 5 l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKML----AGMIEPTS--GELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHH----hCCCCCCC--CEEEECCEECC
Confidence 789999 58852 234 78888875 9999999999999999999 99999998 99999987663
Q ss_pred CCcHHHhhcCcccc-ccCC--CCCCccHHHHHHh
Q psy9513 73 KKDEASASSGKNFV-HDPR--IGKKDETHAIVKL 103 (1491)
Q Consensus 73 ~~~~~~~~~~~~~~-q~~~--~~~~~~~~~~v~~ 103 (1491)
..........++|+ |++. +.+..++...+.+
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 112 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDF 112 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHH
Confidence 22222334568888 8764 3344455555544
No 496
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.7e-09 Score=122.77 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=71.2
Q ss_pred ceeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|.++|+ ++|++ ..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.++++|..+........
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~ 76 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHF----NGILKPTS--GSVLIRGEPITKENIREV 76 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEECCcCCHHHH
Confidence 3889999 58853 335 88888875 9999999999999999999 99999998 999999876643223344
Q ss_pred hcCcccc-ccCC-CCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPR-IGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~-~~~~~~~~~~v~~~ 104 (1491)
...++|+ |++. .....++..++.+.
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~ 103 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFG 103 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhH
Confidence 5678898 8763 23345777777653
No 497
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.92 E-value=1.5e-09 Score=118.31 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=71.6
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|.+.|+ ++|++... .+++|++. +++|+||||||||||+++| +|.++|.+ |.+.++|..+.. ....
T Consensus 11 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i----~G~~~~~~--G~i~~~g~~i~~---~~~~ 81 (214)
T PRK13543 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVL----AGLLHVES--GQIQIDGKTATR---GDRS 81 (214)
T ss_pred eEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHH----hCCCCCCC--eeEEECCEEccc---hhhh
Confidence 3788999 58876556 88888876 9999999999999999999 99999998 999999876632 1123
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..++|+ |.+.+.+..++..++.+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (214)
T PRK13543 82 RFMAYLGHLPGLKADLSTLENLHFL 106 (214)
T ss_pred hceEEeecCcccccCCcHHHHHHHH
Confidence 457888 887776666888877654
No 498
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.6e-09 Score=122.81 Aligned_cols=92 Identities=15% Similarity=0.229 Sum_probs=68.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC--CcHHHh
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK--KDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~--~~~~~~ 79 (1491)
|++.|+ ++|++..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.|.++|..+.. ......
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~i~~~~~~~~~~ 75 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNL----SGLLRPQK--GAVLWQGKPLDYSKRGLLAL 75 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHH----cCCCCCCc--cEEEECCEEcccccCCHHHH
Confidence 678888 58876556 88888875 9999999999999999999 99999998 999999876631 112234
Q ss_pred hcCcccc-ccCCC-CCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRI-GKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~-~~~~~~~~~v~~~ 104 (1491)
+.+++|+ |++.. ....++..++.+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~~~~~~l~~~ 102 (271)
T PRK13638 76 RQQVATVFQDPEQQIFYTDIDSDIAFS 102 (271)
T ss_pred HhheEEEeeChhhccccccHHHHHHHH
Confidence 4678898 87642 2334566666543
No 499
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=1.5e-09 Score=122.85 Aligned_cols=92 Identities=15% Similarity=0.216 Sum_probs=70.3
Q ss_pred eeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-HHHh
Q psy9513 7 LHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-EASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-~~~~ 79 (1491)
|.++|+ ++|+ +..+ .+++|++. +++|+||||||||||+++| +|.++|.+ |.|+++|..+.... ....
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~~ 75 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHL----NGLLRPQK--GKVLVSGIDTGDFSKLQGI 75 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--ceEEECCEECCccccHHHH
Confidence 668888 5885 3445 88888875 9999999999999999999 99999998 99999987664321 2334
Q ss_pred hcCcccc-ccCCC-CCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRI-GKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~-~~~~~~~~~v~~~ 104 (1491)
..+++|+ |++.. ....++..++.+.
T Consensus 76 ~~~i~~v~q~~~~~~~~~tv~enl~~~ 102 (274)
T PRK13644 76 RKLVGIVFQNPETQFVGRTVEEDLAFG 102 (274)
T ss_pred HhheEEEEEChhhhcccchHHHHHHhh
Confidence 5678999 88642 4446777777653
No 500
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.92 E-value=1e-09 Score=115.86 Aligned_cols=87 Identities=16% Similarity=0.288 Sum_probs=65.3
Q ss_pred eeeecc-cccCCC--Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 7 LHIMGI-RNFPAD--KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 7 l~i~~~-~~~~~~--~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
|+++|+ .+|++. .. .+++|+++ +++|+||||||||||+++| +|..+|.+ |.+.++|..+... ....
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l----~G~~~~~~--G~i~~~g~~~~~~-~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQ--GEITLDGVPVSDL-EKAL 73 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHH----hccCCCCC--CEEEECCEEHHHH-HHHH
Confidence 356777 477654 35 88888876 9999999999999999999 99999998 9999988655211 2234
Q ss_pred hcCcccc-ccCCCCCCccHHHHH
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v 101 (1491)
+..++|+ |++.+.+ .++..++
T Consensus 74 ~~~i~~~~q~~~~~~-~tv~~~i 95 (178)
T cd03247 74 SSLISVLNQRPYLFD-TTLRNNL 95 (178)
T ss_pred HhhEEEEccCCeeec-ccHHHhh
Confidence 5668888 8776554 4666655
Done!