Query psy9513
Match_columns 1491
No_of_seqs 749 out of 5778
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 21:32:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qks_A DNA double-strand break 99.8 1.9E-20 6.7E-25 200.1 4.4 189 2-236 1-192 (203)
2 3auy_A DNA double-strand break 99.7 1.4E-16 4.7E-21 188.1 11.1 168 1-215 2-170 (371)
3 3tui_C Methionine import ATP-b 99.6 3E-15 1E-19 170.7 10.9 126 1171-1310 64-240 (366)
4 3qf7_A RAD50; ABC-ATPase, ATPa 99.6 7.5E-15 2.6E-19 171.8 13.6 175 2-215 1-179 (365)
5 3kta_A Chromosome segregation 99.6 9.2E-16 3.2E-20 162.3 5.2 173 1-214 1-180 (182)
6 1f2t_A RAD50 ABC-ATPase; DNA d 99.6 9.2E-16 3.1E-20 154.4 4.2 141 2-187 1-147 (149)
7 1qhl_A Protein (cell division 99.5 9E-16 3.1E-20 164.5 1.5 192 2-215 5-215 (227)
8 3qkt_A DNA double-strand break 99.5 2.9E-15 9.9E-20 174.4 5.8 174 2-215 1-175 (339)
9 3tif_A Uncharacterized ABC tra 99.5 2.1E-14 7.2E-19 156.6 10.4 126 1171-1310 41-221 (235)
10 3rlf_A Maltose/maltodextrin im 99.5 4E-14 1.4E-18 162.8 10.5 121 1171-1310 39-210 (381)
11 3fvq_A Fe(3+) IONS import ATP- 99.5 2.5E-14 8.6E-19 163.3 8.6 125 1171-1310 40-215 (359)
12 2olj_A Amino acid ABC transpor 99.5 1E-13 3.4E-18 153.1 10.7 124 1172-1310 61-235 (263)
13 1z47_A CYSA, putative ABC-tran 99.4 1.3E-13 4.5E-18 157.7 10.6 121 1171-1310 51-222 (355)
14 2pcj_A ABC transporter, lipopr 99.4 1.3E-13 4.5E-18 149.3 9.7 125 1172-1310 41-215 (224)
15 4g1u_C Hemin import ATP-bindin 99.4 8.9E-14 3E-18 154.3 8.4 123 1171-1310 47-224 (266)
16 1b0u_A Histidine permease; ABC 99.4 1.8E-13 6E-18 151.9 10.6 125 1172-1310 43-229 (262)
17 1vpl_A ABC transporter, ATP-bi 99.4 1.4E-13 4.8E-18 151.5 9.6 121 1172-1310 52-222 (256)
18 1ji0_A ABC transporter; ATP bi 99.4 1.6E-13 5.4E-18 150.4 9.6 123 1172-1310 43-215 (240)
19 1g29_1 MALK, maltose transport 99.4 1.8E-13 6.3E-18 158.4 10.5 127 1171-1310 39-216 (372)
20 2yyz_A Sugar ABC transporter, 99.4 1.3E-13 4.5E-18 158.3 8.7 121 1171-1310 39-210 (359)
21 2it1_A 362AA long hypothetical 99.4 1.5E-13 5E-18 158.1 9.1 121 1171-1310 39-210 (362)
22 3gfo_A Cobalt import ATP-bindi 99.4 1.2E-13 4.2E-18 153.4 8.0 125 1171-1310 44-220 (275)
23 3d31_A Sulfate/molybdate ABC t 99.4 2.1E-13 7.1E-18 156.1 9.9 120 1172-1310 37-204 (348)
24 1oxx_K GLCV, glucose, ABC tran 99.4 1.7E-13 5.7E-18 157.8 9.1 125 1172-1310 42-217 (353)
25 2onk_A Molybdate/tungstate ABC 99.4 9E-14 3.1E-18 151.6 6.5 120 1172-1310 35-203 (240)
26 1v43_A Sugar-binding transport 99.4 1.8E-13 6.2E-18 157.9 8.4 121 1171-1310 47-218 (372)
27 2nq2_C Hypothetical ABC transp 99.4 3.9E-13 1.3E-17 148.1 9.4 91 1217-1311 66-206 (253)
28 1g6h_A High-affinity branched- 99.4 2.3E-13 8E-18 150.8 7.1 123 1172-1310 44-229 (257)
29 2qi9_C Vitamin B12 import ATP- 99.4 3.9E-13 1.3E-17 147.3 8.1 122 1172-1310 37-209 (249)
30 3nh6_A ATP-binding cassette SU 99.4 7.8E-13 2.7E-17 148.7 8.9 87 1218-1310 129-264 (306)
31 1w1w_A Structural maintenance 99.3 7.6E-13 2.6E-17 159.7 8.0 185 1-222 1-194 (430)
32 1ji0_A ABC transporter; ATP bi 99.3 1.3E-12 4.6E-17 143.0 7.3 99 1-105 1-106 (240)
33 2pcj_A ABC transporter, lipopr 99.3 1.8E-12 6E-17 140.4 6.1 97 1-105 1-107 (224)
34 3fvq_A Fe(3+) IONS import ATP- 99.3 1.7E-12 5.8E-17 148.3 6.0 95 6-106 4-106 (359)
35 2zu0_C Probable ATP-dependent 99.3 3.1E-12 1.1E-16 142.3 7.9 63 1244-1310 169-241 (267)
36 2yz2_A Putative ABC transporte 99.3 3.6E-12 1.2E-16 141.9 8.1 119 1172-1310 44-214 (266)
37 2ixe_A Antigen peptide transpo 99.3 3.7E-12 1.3E-16 141.8 8.0 120 1172-1310 56-232 (271)
38 2olj_A Amino acid ABC transpor 99.3 2.8E-12 9.4E-17 141.6 6.7 93 6-104 24-124 (263)
39 4g1u_C Hemin import ATP-bindin 99.3 4.4E-12 1.5E-16 140.6 7.9 95 6-106 11-111 (266)
40 2ff7_A Alpha-hemolysin translo 99.3 3.2E-12 1.1E-16 140.4 6.7 120 1172-1310 46-219 (247)
41 2d2e_A SUFC protein; ABC-ATPas 99.3 2E-12 7E-17 142.6 5.1 63 1244-1310 148-220 (250)
42 4ad8_A DNA repair protein RECN 99.3 1.2E-10 4.2E-15 143.6 21.3 150 2-215 38-190 (517)
43 3rlf_A Maltose/maltodextrin im 99.3 3.6E-12 1.2E-16 146.6 6.7 93 6-106 3-101 (381)
44 1b0u_A Histidine permease; ABC 99.3 2.9E-12 1E-16 142.1 5.7 98 1-104 1-117 (262)
45 2pze_A Cystic fibrosis transme 99.2 6.7E-12 2.3E-16 136.3 8.3 87 1218-1310 70-205 (229)
46 1sgw_A Putative ABC transporte 99.2 1.3E-12 4.4E-17 139.4 2.3 86 1218-1307 79-206 (214)
47 2ihy_A ABC transporter, ATP-bi 99.2 3.2E-12 1.1E-16 142.6 5.6 122 1172-1310 58-239 (279)
48 1mv5_A LMRA, multidrug resista 99.2 2.9E-12 1E-16 140.8 5.1 120 1172-1310 39-213 (243)
49 1vpl_A ABC transporter, ATP-bi 99.2 6.1E-12 2.1E-16 138.4 7.3 92 6-104 15-112 (256)
50 2ghi_A Transport protein; mult 99.2 5.1E-12 1.7E-16 139.9 6.1 62 1244-1310 160-229 (260)
51 3tif_A Uncharacterized ABC tra 99.2 6.6E-12 2.3E-16 136.9 6.2 94 7-106 2-109 (235)
52 3tui_C Methionine import ATP-b 99.2 7.5E-12 2.6E-16 142.9 6.8 95 6-106 24-131 (366)
53 1g6h_A High-affinity branched- 99.2 4.9E-12 1.7E-16 140.1 5.0 94 6-105 7-107 (257)
54 1sgw_A Putative ABC transporte 99.2 8.3E-12 2.8E-16 133.1 6.6 88 6-105 10-103 (214)
55 2pjz_A Hypothetical protein ST 99.2 1.2E-11 4E-16 136.6 7.5 86 1218-1310 75-202 (263)
56 2yyz_A Sugar ABC transporter, 99.2 1.1E-11 3.8E-16 142.3 7.1 93 6-106 3-101 (359)
57 3gfo_A Cobalt import ATP-bindi 99.2 9.4E-12 3.2E-16 138.2 6.2 95 6-106 7-111 (275)
58 1v43_A Sugar-binding transport 99.2 9.7E-12 3.3E-16 143.5 6.3 93 6-106 11-109 (372)
59 2it1_A 362AA long hypothetical 99.2 1.6E-11 5.4E-16 141.1 7.6 93 6-106 3-101 (362)
60 1mv5_A LMRA, multidrug resista 99.2 1.5E-11 5.2E-16 135.1 6.7 91 7-104 2-99 (243)
61 2ixe_A Antigen peptide transpo 99.2 1.5E-11 5E-16 137.0 6.7 93 6-105 16-117 (271)
62 1z47_A CYSA, putative ABC-tran 99.2 1.8E-11 6.3E-16 140.0 7.5 93 6-106 14-113 (355)
63 2ff7_A Alpha-hemolysin translo 99.2 1.5E-11 5.1E-16 135.0 6.4 92 6-104 7-106 (247)
64 2ihy_A ABC transporter, ATP-bi 99.2 1.6E-11 5.6E-16 136.9 5.7 93 6-104 21-123 (279)
65 3nh6_A ATP-binding cassette SU 99.1 2E-11 6.8E-16 137.3 5.9 93 6-105 53-152 (306)
66 2cbz_A Multidrug resistance-as 99.1 2.2E-11 7.4E-16 133.0 5.9 62 1244-1310 132-204 (237)
67 2bbs_A Cystic fibrosis transme 99.1 5.6E-11 1.9E-15 133.0 9.4 62 1244-1310 164-234 (290)
68 3d31_A Sulfate/molybdate ABC t 99.1 2.4E-11 8.3E-16 139.0 6.4 91 7-106 2-98 (348)
69 2d2e_A SUFC protein; ABC-ATPas 99.1 2.1E-11 7.3E-16 134.4 5.6 93 7-105 4-105 (250)
70 1g29_1 MALK, maltose transport 99.1 2.1E-11 7.1E-16 141.2 5.3 95 6-106 3-107 (372)
71 3qf4_B Uncharacterized ABC tra 99.1 2.8E-11 9.5E-16 151.7 6.8 119 1173-1310 393-565 (598)
72 3qf4_A ABC transporter, ATP-bi 99.1 2.5E-11 8.4E-16 151.6 6.3 105 1187-1310 400-553 (587)
73 4a82_A Cystic fibrosis transme 99.1 3.1E-11 1.1E-15 150.7 7.3 119 1173-1310 379-551 (578)
74 1oxx_K GLCV, glucose, ABC tran 99.1 1.4E-11 4.8E-16 141.8 3.6 94 7-106 4-108 (353)
75 2onk_A Molybdate/tungstate ABC 99.1 3E-11 1E-15 131.6 6.0 90 7-105 2-95 (240)
76 1f2t_B RAD50 ABC-ATPase; DNA d 99.1 2.9E-10 9.9E-15 113.0 12.2 57 1249-1310 73-138 (148)
77 3b5x_A Lipid A export ATP-bind 99.1 5.6E-11 1.9E-15 148.7 7.3 120 1172-1310 380-554 (582)
78 2ghi_A Transport protein; mult 99.1 7.3E-11 2.5E-15 130.7 6.9 91 6-104 17-116 (260)
79 3gd7_A Fusion complex of cysti 99.1 2.4E-11 8.2E-16 141.2 3.0 120 1172-1310 58-229 (390)
80 3ozx_A RNAse L inhibitor; ATP 99.1 1.6E-10 5.3E-15 141.3 10.0 63 1244-1310 390-462 (538)
81 2yl4_A ATP-binding cassette SU 99.1 1.3E-10 4.4E-15 145.9 9.5 87 1218-1310 419-557 (595)
82 2yz2_A Putative ABC transporte 99.1 5.9E-11 2E-15 132.0 5.6 90 7-105 3-104 (266)
83 2pze_A Cystic fibrosis transme 99.1 1.4E-10 4.7E-15 126.0 7.6 79 6-104 6-92 (229)
84 1e69_A Chromosome segregation 99.1 2.7E-11 9.4E-16 139.8 2.1 156 2-200 1-157 (322)
85 1yqt_A RNAse L inhibitor; ATP- 99.1 2.1E-10 7E-15 140.8 10.0 89 1217-1309 347-477 (538)
86 2zu0_C Probable ATP-dependent 99.1 5.8E-11 2E-15 132.0 4.6 93 6-104 20-121 (267)
87 2nq2_C Hypothetical ABC transp 99.1 1.1E-10 3.8E-15 128.5 6.6 81 6-105 4-91 (253)
88 3bk7_A ABC transporter ATP-bin 99.0 2.8E-10 9.6E-15 140.9 10.6 89 1217-1309 417-547 (607)
89 3j16_B RLI1P; ribosome recycli 99.0 2.7E-10 9.1E-15 140.7 9.0 63 1244-1310 472-544 (608)
90 3gd7_A Fusion complex of cysti 99.0 2.2E-10 7.5E-15 133.1 7.1 89 6-102 19-115 (390)
91 2cbz_A Multidrug resistance-as 99.0 2E-10 6.7E-15 125.4 6.2 80 6-105 3-90 (237)
92 3b60_A Lipid A export ATP-bind 99.0 1.9E-10 6.4E-15 144.0 6.7 87 1218-1310 418-554 (582)
93 2qi9_C Vitamin B12 import ATP- 99.0 2E-10 6.8E-15 125.8 5.9 88 7-104 5-97 (249)
94 2o5v_A DNA replication and rep 99.0 2.3E-09 7.9E-14 123.4 14.5 51 1-54 3-53 (359)
95 3g5u_A MCG1178, multidrug resi 98.9 4.1E-10 1.4E-14 152.9 6.5 87 1218-1310 465-600 (1284)
96 3kta_B Chromosome segregation 98.9 9E-09 3.1E-13 105.2 14.9 127 1136-1319 12-150 (173)
97 1yqt_A RNAse L inhibitor; ATP- 98.9 7.2E-10 2.4E-14 136.1 7.7 63 1244-1310 163-234 (538)
98 3bk7_A ABC transporter ATP-bin 98.9 1E-09 3.5E-14 135.9 8.7 63 1244-1310 233-304 (607)
99 2pjz_A Hypothetical protein ST 98.9 4.9E-10 1.7E-14 123.6 4.1 86 7-104 2-97 (263)
100 3j16_B RLI1P; ribosome recycli 98.9 1.4E-09 4.9E-14 134.2 8.4 66 1244-1313 226-300 (608)
101 2iw3_A Elongation factor 3A; a 98.9 2.2E-09 7.6E-14 137.1 10.4 90 1217-1310 495-621 (986)
102 4ad8_A DNA repair protein RECN 98.9 8.4E-07 2.9E-11 109.3 31.5 61 1245-1310 403-473 (517)
103 3ozx_A RNAse L inhibitor; ATP 98.9 2E-09 6.9E-14 131.5 8.0 63 1244-1311 143-214 (538)
104 3b60_A Lipid A export ATP-bind 98.9 1.9E-09 6.4E-14 135.0 7.8 93 6-105 341-441 (582)
105 3b5x_A Lipid A export ATP-bind 98.9 1.8E-09 6.1E-14 135.2 7.2 93 6-105 341-441 (582)
106 2bbs_A Cystic fibrosis transme 98.8 1.6E-09 5.6E-14 121.2 5.6 76 6-102 40-120 (290)
107 3g5u_A MCG1178, multidrug resi 98.8 1.2E-09 4E-14 148.4 5.2 94 6-106 387-489 (1284)
108 2yl4_A ATP-binding cassette SU 98.8 2.4E-09 8.2E-14 134.4 7.4 92 7-105 342-442 (595)
109 4a82_A Cystic fibrosis transme 98.8 1.9E-09 6.5E-14 134.6 6.2 93 6-105 339-439 (578)
110 4f4c_A Multidrug resistance pr 98.8 1.5E-09 5E-14 147.8 4.6 93 6-105 415-516 (1321)
111 3qf4_B Uncharacterized ABC tra 98.8 2.5E-09 8.5E-14 134.0 6.3 92 6-104 354-452 (598)
112 3qf4_A ABC transporter, ATP-bi 98.8 2.5E-09 8.5E-14 133.5 5.9 93 6-105 341-441 (587)
113 3qf7_A RAD50; ABC-ATPase, ATPa 98.8 7.1E-09 2.4E-13 121.1 7.7 63 1243-1310 283-360 (365)
114 4f4c_A Multidrug resistance pr 98.7 4.6E-09 1.6E-13 142.9 5.9 87 1218-1310 493-628 (1321)
115 3ux8_A Excinuclease ABC, A sub 98.7 8.5E-09 2.9E-13 131.4 6.6 60 1244-1308 548-619 (670)
116 1c1g_A Tropomyosin; contractIl 98.7 6.3E-05 2.1E-09 85.0 38.3 28 245-272 4-32 (284)
117 3ux8_A Excinuclease ABC, A sub 98.7 1.6E-08 5.5E-13 128.9 8.2 60 1244-1308 207-277 (670)
118 2iw3_A Elongation factor 3A; a 98.7 1.1E-08 3.7E-13 130.8 5.4 63 1244-1310 906-974 (986)
119 3qkt_A DNA double-strand break 98.6 2E-07 6.9E-12 108.1 15.5 57 1249-1310 264-329 (339)
120 4aby_A DNA repair protein RECN 98.6 4.7E-08 1.6E-12 117.8 9.5 48 3-53 39-86 (415)
121 4aby_A DNA repair protein RECN 98.6 3.8E-07 1.3E-11 109.9 15.2 59 1245-1308 301-369 (415)
122 1i84_S Smooth muscle myosin he 98.5 9E-08 3.1E-12 129.0 9.0 19 29-47 171-189 (1184)
123 1i84_S Smooth muscle myosin he 98.5 1.9E-07 6.3E-12 125.9 11.8 39 241-279 858-897 (1184)
124 3pih_A Uvrabc system protein A 98.5 9.3E-08 3.2E-12 122.4 7.5 62 1244-1310 469-541 (916)
125 3pih_A Uvrabc system protein A 98.5 7.9E-08 2.7E-12 123.0 6.8 61 1244-1309 810-882 (916)
126 1htw_A HI0065; nucleotide-bind 98.5 7.5E-09 2.6E-13 104.5 -2.2 82 7-101 8-95 (158)
127 4gp7_A Metallophosphoesterase; 98.5 2.7E-08 9.2E-13 102.9 1.1 55 1243-1297 87-166 (171)
128 2vf7_A UVRA2, excinuclease ABC 98.4 1.2E-07 4.2E-12 120.3 6.3 60 1244-1308 735-806 (842)
129 3auy_A DNA double-strand break 98.4 6E-06 2E-10 97.0 20.3 63 1249-1317 296-367 (371)
130 2r6f_A Excinuclease ABC subuni 98.4 1.5E-07 5.3E-12 119.1 7.0 60 1244-1308 850-921 (972)
131 2ygr_A Uvrabc system protein A 98.4 2E-07 7E-12 118.5 7.0 61 1244-1309 868-940 (993)
132 2ygr_A Uvrabc system protein A 98.4 3.3E-07 1.1E-11 116.6 7.9 60 1244-1308 526-596 (993)
133 2r6f_A Excinuclease ABC subuni 98.4 3.2E-07 1.1E-11 116.2 7.7 60 1244-1308 509-579 (972)
134 2vf7_A UVRA2, excinuclease ABC 98.3 5.6E-07 1.9E-11 114.3 7.2 61 1244-1309 384-455 (842)
135 1e69_A Chromosome segregation 98.2 1E-06 3.6E-11 101.3 7.5 61 1244-1309 224-298 (322)
136 1ye8_A Protein THEP1, hypothet 98.2 1.6E-06 5.4E-11 89.7 7.1 58 1240-1297 77-150 (178)
137 3euj_A Chromosome partition pr 98.2 5.1E-07 1.7E-11 107.2 3.8 46 21-72 21-68 (483)
138 3b9q_A Chloroplast SRP recepto 98.2 3.5E-07 1.2E-11 103.2 2.2 78 21-104 91-179 (302)
139 3sop_A Neuronal-specific septi 98.2 1.1E-07 3.8E-12 105.6 -2.5 37 29-71 4-40 (270)
140 1w1w_A Structural maintenance 98.2 2.2E-06 7.7E-11 103.0 8.7 75 1242-1321 336-424 (430)
141 2yhs_A FTSY, cell division pro 98.1 5.9E-07 2E-11 105.8 2.6 79 21-105 284-372 (503)
142 2o5v_A DNA replication and rep 98.1 9.4E-07 3.2E-11 101.7 3.9 84 1219-1310 244-343 (359)
143 2og2_A Putative signal recogni 98.1 7.1E-07 2.4E-11 102.4 2.4 79 21-105 148-237 (359)
144 3b9q_A Chloroplast SRP recepto 98.1 3.9E-06 1.3E-10 94.7 7.0 90 1218-1312 155-284 (302)
145 1z6g_A Guanylate kinase; struc 98.0 1.2E-06 4.1E-11 94.5 2.0 41 21-71 14-57 (218)
146 1rj9_A FTSY, signal recognitio 98.0 2.2E-06 7.4E-11 96.7 4.2 70 29-104 104-180 (304)
147 3b85_A Phosphate starvation-in 98.0 6E-07 2E-11 95.3 -0.6 50 1244-1295 109-163 (208)
148 1sq5_A Pantothenate kinase; P- 98.0 7.1E-07 2.4E-11 101.9 -0.3 92 7-110 38-158 (308)
149 2og2_A Putative signal recogni 98.0 9.2E-06 3.1E-10 93.2 8.0 90 1218-1312 212-341 (359)
150 2npi_A Protein CLP1; CLP1-PCF1 97.9 2.8E-06 9.6E-11 101.4 3.3 67 1240-1310 236-326 (460)
151 3szr_A Interferon-induced GTP- 97.9 1.2E-06 4E-11 109.4 -0.2 75 24-104 42-121 (608)
152 1s96_A Guanylate kinase, GMP k 97.9 2.1E-06 7.1E-11 92.0 1.1 50 29-86 18-67 (219)
153 3e70_C DPA, signal recognition 97.9 3.8E-06 1.3E-10 95.6 3.0 71 29-105 131-208 (328)
154 4gp7_A Metallophosphoesterase; 97.9 2.3E-06 7.9E-11 88.3 1.0 25 23-47 2-29 (171)
155 2qm8_A GTPase/ATPase; G protei 97.9 4.6E-07 1.6E-11 104.4 -5.1 80 7-92 30-119 (337)
156 2npi_A Protein CLP1; CLP1-PCF1 97.9 9.5E-07 3.2E-11 105.5 -2.8 63 7-89 119-188 (460)
157 2eyu_A Twitching motility prot 97.9 1.9E-06 6.6E-11 95.1 -0.2 56 7-71 6-64 (261)
158 2yv5_A YJEQ protein; hydrolase 97.8 7.6E-06 2.6E-10 92.7 3.6 57 29-92 167-227 (302)
159 2v9p_A Replication protein E1; 97.8 1.3E-06 4.3E-11 97.8 -3.0 52 7-68 102-158 (305)
160 3b85_A Phosphate starvation-in 97.8 3.6E-06 1.2E-10 89.2 0.3 64 14-89 9-75 (208)
161 1u0l_A Probable GTPase ENGC; p 97.8 9.8E-06 3.4E-10 91.9 3.9 37 29-71 171-210 (301)
162 3aez_A Pantothenate kinase; tr 97.7 1.9E-06 6.5E-11 97.7 -2.6 27 29-59 92-118 (312)
163 1znw_A Guanylate kinase, GMP k 97.7 7.3E-06 2.5E-10 87.7 1.9 30 23-56 15-45 (207)
164 2pt7_A CAG-ALFA; ATPase, prote 97.7 6.8E-06 2.3E-10 94.2 1.7 44 21-70 162-208 (330)
165 2obl_A ESCN; ATPase, hydrolase 97.7 5.3E-06 1.8E-10 95.4 0.7 58 6-70 45-108 (347)
166 2dpy_A FLII, flagellum-specifi 97.7 6.1E-06 2.1E-10 98.0 1.0 91 6-103 131-237 (438)
167 2gza_A Type IV secretion syste 97.7 6.5E-06 2.2E-10 95.9 0.5 78 21-106 166-250 (361)
168 1tf7_A KAIC; homohexamer, hexa 97.7 5.6E-06 1.9E-10 102.2 -0.3 62 1245-1311 359-444 (525)
169 1t9h_A YLOQ, probable GTPase E 97.7 9.8E-06 3.4E-10 90.8 1.6 58 29-93 175-236 (307)
170 2ehv_A Hypothetical protein PH 97.6 1.4E-05 4.9E-10 88.6 2.0 65 1-70 1-69 (251)
171 3tr0_A Guanylate kinase, GMP k 97.6 1.8E-05 6.1E-10 84.7 2.4 24 29-56 9-32 (205)
172 1tq4_A IIGP1, interferon-induc 97.6 2.3E-05 7.8E-10 91.7 3.3 37 29-71 71-107 (413)
173 1znw_A Guanylate kinase, GMP k 97.6 2.2E-06 7.6E-11 91.8 -5.0 53 1253-1309 137-203 (207)
174 2qag_C Septin-7; cell cycle, c 97.5 3.6E-05 1.2E-09 90.5 4.2 47 6-59 11-59 (418)
175 2qag_B Septin-6, protein NEDD5 97.5 1.5E-05 5.2E-10 92.8 1.0 46 6-55 16-66 (427)
176 3lnc_A Guanylate kinase, GMP k 97.5 2.6E-05 8.8E-10 85.1 2.4 33 21-57 18-54 (231)
177 2qnr_A Septin-2, protein NEDD5 97.5 2.5E-05 8.6E-10 88.4 2.2 51 11-71 3-56 (301)
178 1zp6_A Hypothetical protein AT 97.5 4.5E-05 1.5E-09 80.4 3.9 35 29-71 11-45 (191)
179 3a00_A Guanylate kinase, GMP k 97.5 3.5E-05 1.2E-09 80.7 2.8 26 29-58 3-28 (186)
180 2rcn_A Probable GTPase ENGC; Y 97.5 2.8E-05 9.7E-10 88.7 2.2 33 29-67 217-250 (358)
181 1p9r_A General secretion pathw 97.5 1.3E-05 4.4E-10 94.4 -0.9 37 29-71 169-205 (418)
182 2i3b_A HCR-ntpase, human cance 97.4 2.4E-05 8.3E-10 81.4 0.2 35 29-71 3-37 (189)
183 1lvg_A Guanylate kinase, GMP k 97.4 4.8E-05 1.6E-09 80.4 2.5 24 29-56 6-29 (198)
184 2jeo_A Uridine-cytidine kinase 97.4 4.7E-05 1.6E-09 83.8 2.2 36 14-49 8-47 (245)
185 2bbw_A Adenylate kinase 4, AK4 97.3 2.4E-05 8.2E-10 86.3 -1.3 38 28-68 28-65 (246)
186 3c8u_A Fructokinase; YP_612366 97.3 4.5E-05 1.5E-09 81.6 0.6 39 29-71 24-63 (208)
187 1tf7_A KAIC; homohexamer, hexa 97.3 5.3E-05 1.8E-09 93.4 1.2 79 6-89 12-97 (525)
188 1pui_A ENGB, probable GTP-bind 97.3 4.1E-05 1.4E-09 82.2 0.1 53 7-65 4-63 (210)
189 1ye8_A Protein THEP1, hypothet 97.3 6.3E-05 2.2E-09 77.6 1.3 24 29-56 2-25 (178)
190 2oap_1 GSPE-2, type II secreti 97.2 0.00014 4.8E-09 88.1 4.5 44 21-70 251-297 (511)
191 3na7_A HP0958; flagellar bioge 97.2 0.024 8.2E-07 61.8 21.4 87 811-898 55-141 (256)
192 4a74_A DNA repair and recombin 97.2 0.00014 4.7E-09 79.4 3.4 26 25-54 22-48 (231)
193 2ewv_A Twitching motility prot 97.2 6E-05 2E-09 87.9 0.3 37 29-71 138-175 (372)
194 1kgd_A CASK, peripheral plasma 97.2 0.00012 4E-09 76.2 2.2 28 26-57 4-31 (180)
195 2f1r_A Molybdopterin-guanine d 97.1 3.7E-05 1.3E-09 78.4 -1.8 38 28-71 3-43 (171)
196 2bdt_A BH3686; alpha-beta prot 97.1 0.00014 4.6E-09 76.5 2.1 33 29-70 4-36 (189)
197 1nij_A Hypothetical protein YJ 97.1 0.00017 5.9E-09 82.4 2.5 38 28-71 5-50 (318)
198 4e22_A Cytidylate kinase; P-lo 97.0 0.0001 3.5E-09 81.3 0.2 34 29-65 29-62 (252)
199 3na7_A HP0958; flagellar bioge 97.0 0.045 1.5E-06 59.6 21.1 86 858-944 43-128 (256)
200 3uie_A Adenylyl-sulfate kinase 97.0 7.6E-05 2.6E-09 79.2 -0.9 36 29-71 27-64 (200)
201 3jvv_A Twitching mobility prot 97.0 0.00017 5.7E-09 83.1 1.8 33 29-66 125-157 (356)
202 1ewq_A DNA mismatch repair pro 97.0 0.00016 5.5E-09 91.5 1.2 75 1217-1294 614-702 (765)
203 3thx_A DNA mismatch repair pro 97.0 0.0003 1E-08 90.8 3.6 65 1241-1310 723-800 (934)
204 3asz_A Uridine kinase; cytidin 96.9 0.00018 6E-09 77.2 1.1 25 29-57 8-32 (211)
205 2kjq_A DNAA-related protein; s 96.9 0.00028 9.7E-09 70.3 2.3 37 28-71 37-75 (149)
206 2o8b_B DNA mismatch repair pro 96.9 0.00075 2.6E-08 88.4 6.8 58 1246-1307 857-925 (1022)
207 2j41_A Guanylate kinase; GMP, 96.9 0.0003 1E-08 75.1 2.2 27 29-59 8-34 (207)
208 3ney_A 55 kDa erythrocyte memb 96.9 0.0004 1.4E-08 72.1 3.0 31 22-56 13-44 (197)
209 3tau_A Guanylate kinase, GMP k 96.8 0.00038 1.3E-08 74.2 2.6 25 29-57 10-34 (208)
210 1cr0_A DNA primase/helicase; R 96.8 0.00023 7.8E-09 80.9 0.7 61 1246-1311 137-236 (296)
211 3l51_B Structural maintenance 96.8 8.7E-06 3E-10 82.6 -10.1 122 584-715 16-159 (166)
212 4eun_A Thermoresistant glucoki 96.8 0.00038 1.3E-08 73.8 2.0 33 29-71 31-63 (200)
213 1ewq_A DNA mismatch repair pro 96.8 0.00046 1.6E-08 87.4 3.0 41 7-47 551-596 (765)
214 1rz3_A Hypothetical protein rb 96.8 0.00031 1.1E-08 74.4 1.2 36 29-70 24-59 (201)
215 2x8a_A Nuclear valosin-contain 96.7 0.00045 1.5E-08 76.9 2.3 43 21-71 37-80 (274)
216 2eyu_A Twitching motility prot 96.7 0.00053 1.8E-08 75.5 2.9 53 1247-1307 88-145 (261)
217 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00043 1.5E-08 79.2 2.0 62 1243-1310 226-290 (330)
218 3thx_B DNA mismatch repair pro 96.7 0.00093 3.2E-08 86.0 5.2 69 1227-1297 718-802 (918)
219 1cr0_A DNA primase/helicase; R 96.7 0.0011 3.8E-08 75.1 5.3 45 21-71 26-74 (296)
220 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0015 5.1E-08 71.2 5.8 58 1249-1310 113-192 (235)
221 2vp4_A Deoxynucleoside kinase; 96.7 0.00073 2.5E-08 73.3 3.2 33 29-71 22-54 (230)
222 2o8b_B DNA mismatch repair pro 96.6 0.001 3.4E-08 87.3 4.9 44 6-49 750-811 (1022)
223 1tq4_A IIGP1, interferon-induc 96.6 0.00016 5.4E-09 84.6 -2.4 58 1244-1305 161-248 (413)
224 3tqc_A Pantothenate kinase; bi 96.6 0.00065 2.2E-08 76.5 2.6 23 29-51 94-116 (321)
225 3ec2_A DNA replication protein 96.6 0.00026 9E-09 73.6 -0.6 27 29-59 40-66 (180)
226 3aez_A Pantothenate kinase; tr 96.6 0.00044 1.5E-08 78.2 1.2 76 1217-1294 121-232 (312)
227 1oix_A RAS-related protein RAB 96.6 0.00059 2E-08 71.7 2.1 25 29-57 31-55 (191)
228 1ls1_A Signal recognition part 96.5 0.00043 1.5E-08 77.8 0.4 59 7-72 77-137 (295)
229 1lw7_A Transcriptional regulat 96.5 0.00061 2.1E-08 79.7 1.5 27 29-59 172-198 (365)
230 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.00068 2.3E-08 73.9 1.5 41 25-71 20-61 (235)
231 1in4_A RUVB, holliday junction 96.5 0.00027 9.4E-09 81.5 -1.8 47 5-51 17-75 (334)
232 4a74_A DNA repair and recombin 96.5 0.00026 8.8E-09 77.2 -2.1 56 1255-1314 123-204 (231)
233 1wb9_A DNA mismatch repair pro 96.4 0.00069 2.4E-08 86.4 1.1 76 1218-1297 646-736 (800)
234 3nwj_A ATSK2; P loop, shikimat 96.4 0.00051 1.8E-08 74.8 -0.1 46 6-51 17-72 (250)
235 1kag_A SKI, shikimate kinase I 96.4 0.00097 3.3E-08 68.7 2.0 19 29-47 6-24 (173)
236 3thx_B DNA mismatch repair pro 96.4 0.0012 4.2E-08 84.8 3.2 28 21-48 664-694 (918)
237 1vma_A Cell division protein F 96.3 0.00083 2.9E-08 75.5 1.1 38 29-72 106-143 (306)
238 1wb9_A DNA mismatch repair pro 96.3 0.0016 5.4E-08 83.1 3.7 28 21-48 599-628 (800)
239 1knq_A Gluconate kinase; ALFA/ 96.3 0.0012 4E-08 68.2 2.0 33 29-71 10-42 (175)
240 1zu4_A FTSY; GTPase, signal re 96.3 0.00099 3.4E-08 75.6 1.5 47 21-73 96-145 (320)
241 1ixz_A ATP-dependent metallopr 96.3 0.00039 1.3E-08 76.9 -1.9 42 21-70 42-84 (254)
242 3vaa_A Shikimate kinase, SK; s 96.3 0.0015 5E-08 69.1 2.6 28 21-48 16-46 (199)
243 3t34_A Dynamin-related protein 96.3 0.002 6.8E-08 75.2 3.9 35 21-59 28-64 (360)
244 1rj9_A FTSY, signal recognitio 96.2 0.0036 1.2E-07 70.3 5.8 73 1218-1291 157-259 (304)
245 3thx_A DNA mismatch repair pro 96.2 0.0022 7.4E-08 82.9 4.3 27 21-47 653-682 (934)
246 1n0w_A DNA repair protein RAD5 96.2 0.0022 7.6E-08 70.3 3.7 42 25-70 21-68 (243)
247 1iy2_A ATP-dependent metallopr 96.2 0.00045 1.5E-08 77.5 -1.9 42 21-70 66-108 (278)
248 2ehv_A Hypothetical protein PH 96.2 0.0016 5.3E-08 71.9 2.3 52 1255-1310 133-208 (251)
249 2f9l_A RAB11B, member RAS onco 96.1 0.0014 4.8E-08 69.3 1.3 19 29-47 7-25 (199)
250 3jvv_A Twitching mobility prot 96.1 0.0019 6.6E-08 74.2 2.5 51 1249-1307 188-243 (356)
251 1udx_A The GTP-binding protein 96.1 0.0022 7.5E-08 75.2 3.0 32 21-56 148-182 (416)
252 1ni3_A YCHF GTPase, YCHF GTP-b 96.0 0.0021 7.3E-08 74.5 2.6 19 29-47 22-40 (392)
253 2www_A Methylmalonic aciduria 96.0 0.0017 5.7E-08 75.1 1.7 39 27-71 74-112 (349)
254 1pzn_A RAD51, DNA repair and r 96.0 0.0027 9.2E-08 73.3 3.1 38 29-70 133-175 (349)
255 3cr8_A Sulfate adenylyltranfer 95.9 0.0019 6.4E-08 78.7 1.2 34 29-68 371-406 (552)
256 2px0_A Flagellar biosynthesis 95.9 0.0022 7.6E-08 71.9 1.6 37 29-71 107-144 (296)
257 2p67_A LAO/AO transport system 95.8 0.00053 1.8E-08 79.1 -4.1 55 7-67 31-90 (341)
258 2cvh_A DNA repair and recombin 95.7 0.0096 3.3E-07 63.9 6.0 62 1245-1310 92-185 (220)
259 1jjv_A Dephospho-COA kinase; P 95.7 0.0038 1.3E-07 66.3 2.6 19 29-47 4-22 (206)
260 1l8d_A DNA double-strand break 95.7 0.039 1.3E-06 51.4 9.2 82 667-749 13-94 (112)
261 1nlf_A Regulatory protein REPA 95.7 0.0035 1.2E-07 70.3 2.2 21 1252-1272 128-150 (279)
262 3sop_A Neuronal-specific septi 95.6 0.001 3.5E-08 73.6 -2.6 70 1217-1290 47-150 (270)
263 1sxj_E Activator 1 40 kDa subu 95.5 0.0039 1.3E-07 72.8 2.0 37 29-71 38-75 (354)
264 2if2_A Dephospho-COA kinase; a 95.5 0.0052 1.8E-07 65.2 2.6 19 29-47 3-21 (204)
265 3lda_A DNA repair protein RAD5 95.4 0.007 2.4E-07 70.6 3.8 40 29-70 180-222 (400)
266 3vkg_A Dynein heavy chain, cyt 95.4 1.9 6.4E-05 62.7 28.5 73 323-395 2010-2082(3245)
267 1cke_A CK, MSSA, protein (cyti 95.4 0.0057 1.9E-07 66.1 2.6 19 29-47 7-25 (227)
268 1svm_A Large T antigen; AAA+ f 95.4 0.0041 1.4E-07 71.9 1.5 27 21-47 160-189 (377)
269 2qt1_A Nicotinamide riboside k 95.4 0.0064 2.2E-07 64.6 2.9 23 29-55 23-45 (207)
270 1np6_A Molybdopterin-guanine d 95.3 0.0049 1.7E-07 62.8 1.6 21 27-47 6-26 (174)
271 2ffh_A Protein (FFH); SRP54, s 95.3 0.0062 2.1E-07 71.3 2.7 54 13-73 84-138 (425)
272 1j8m_F SRP54, signal recogniti 95.3 0.0039 1.3E-07 69.9 0.9 56 10-72 78-137 (297)
273 2qor_A Guanylate kinase; phosp 95.2 0.0073 2.5E-07 63.9 2.6 19 29-47 14-32 (204)
274 2qag_A Septin-2, protein NEDD5 95.2 0.0039 1.3E-07 72.3 0.5 44 7-57 18-63 (361)
275 3szr_A Interferon-induced GTP- 95.1 0.0016 5.4E-08 81.2 -3.2 77 1217-1293 97-199 (608)
276 2v71_A Nuclear distribution pr 95.1 3 0.0001 41.6 24.1 9 885-893 27-35 (189)
277 3vkg_A Dynein heavy chain, cyt 95.1 2.3 8E-05 61.7 27.9 24 29-52 908-931 (3245)
278 2cvh_A DNA repair and recombin 95.1 0.0074 2.5E-07 64.8 2.5 23 25-47 17-40 (220)
279 1ex7_A Guanylate kinase; subst 95.1 0.0083 2.8E-07 61.7 2.6 19 29-47 3-21 (186)
280 2wji_A Ferrous iron transport 95.1 0.011 3.6E-07 60.2 3.4 19 29-47 5-23 (165)
281 4eaq_A DTMP kinase, thymidylat 95.0 0.0097 3.3E-07 64.1 3.1 32 29-67 28-59 (229)
282 3t61_A Gluconokinase; PSI-biol 95.0 0.0086 3E-07 63.3 2.6 20 29-48 20-39 (202)
283 1pzn_A RAD51, DNA repair and r 95.0 0.0022 7.5E-08 74.0 -2.5 50 1244-1293 211-289 (349)
284 1y63_A LMAJ004144AAA protein; 94.9 0.011 3.7E-07 61.4 2.8 29 22-50 2-33 (184)
285 3o0z_A RHO-associated protein 94.9 1.8 6.3E-05 42.0 17.8 43 852-894 32-74 (168)
286 2i3b_A HCR-ntpase, human cance 94.8 0.0066 2.3E-07 62.9 1.0 57 1253-1309 101-170 (189)
287 3o0z_A RHO-associated protein 94.8 1.7 5.8E-05 42.2 17.4 39 861-899 90-128 (168)
288 1ega_A Protein (GTP-binding pr 94.7 0.011 3.6E-07 66.8 2.4 23 25-47 6-28 (301)
289 2dhr_A FTSH; AAA+ protein, hex 94.6 0.011 3.6E-07 71.2 2.3 43 21-71 57-100 (499)
290 2qtf_A Protein HFLX, GTP-bindi 94.6 0.012 4.2E-07 67.9 2.8 25 28-56 180-204 (364)
291 1odf_A YGR205W, hypothetical 3 94.6 0.0065 2.2E-07 67.8 0.4 23 29-51 33-55 (290)
292 2yvu_A Probable adenylyl-sulfa 94.6 0.0087 3E-07 62.3 1.3 19 29-47 15-33 (186)
293 4gkw_A Spindle assembly abnorm 94.6 2.5 8.4E-05 38.0 18.4 70 820-892 15-84 (167)
294 1xjc_A MOBB protein homolog; s 94.5 0.011 3.7E-07 59.6 1.6 25 27-51 4-28 (169)
295 1m7g_A Adenylylsulfate kinase; 94.5 0.0057 1.9E-07 65.2 -0.5 27 29-59 27-53 (211)
296 2pez_A Bifunctional 3'-phospho 94.5 0.015 5E-07 60.1 2.6 25 29-57 7-31 (179)
297 2gj8_A MNME, tRNA modification 94.4 0.017 5.8E-07 59.2 3.0 19 29-47 6-24 (172)
298 3kb2_A SPBC2 prophage-derived 94.4 0.015 5.1E-07 59.5 2.6 20 29-48 3-22 (173)
299 2zej_A Dardarin, leucine-rich 94.4 0.017 5.8E-07 59.9 2.9 22 29-54 4-25 (184)
300 3lw7_A Adenylate kinase relate 94.3 0.016 5.6E-07 59.5 2.6 19 29-47 3-21 (179)
301 3hr8_A Protein RECA; alpha and 94.2 0.019 6.4E-07 65.6 2.8 35 29-69 63-98 (356)
302 1mky_A Probable GTP-binding pr 94.1 0.023 7.7E-07 68.1 3.4 23 29-55 182-204 (439)
303 2wjg_A FEOB, ferrous iron tran 94.0 0.02 6.8E-07 59.5 2.6 19 29-47 9-27 (188)
304 2ze6_A Isopentenyl transferase 94.0 0.02 6.8E-07 62.7 2.6 20 29-48 3-22 (253)
305 2ohf_A Protein OLA1, GTP-bindi 94.0 0.02 6.8E-07 66.1 2.6 22 29-54 24-45 (396)
306 1via_A Shikimate kinase; struc 94.0 0.021 7.3E-07 58.6 2.6 23 29-51 6-28 (175)
307 1qhx_A CPT, protein (chloramph 93.9 0.022 7.5E-07 58.6 2.6 20 29-48 5-24 (178)
308 2dr3_A UPF0273 protein PH0284; 93.9 0.022 7.6E-07 62.3 2.8 23 25-47 20-43 (247)
309 3r20_A Cytidylate kinase; stru 93.8 0.023 7.9E-07 60.6 2.6 23 29-51 11-33 (233)
310 3lxx_A GTPase IMAP family memb 93.8 0.028 9.5E-07 61.2 3.3 27 29-59 31-57 (239)
311 3cm0_A Adenylate kinase; ATP-b 93.8 0.024 8.2E-07 58.9 2.6 20 29-48 6-25 (186)
312 3k1j_A LON protease, ATP-depen 93.7 0.03 1E-06 70.0 3.8 46 21-71 51-99 (604)
313 1ly1_A Polynucleotide kinase; 93.7 0.025 8.7E-07 58.3 2.6 19 29-47 4-22 (181)
314 3nwc_A SMC protein; structural 93.7 2.3E-05 7.7E-10 80.8 -20.3 131 555-707 6-150 (189)
315 1f6b_A SAR1; gtpases, N-termin 93.7 0.015 5.3E-07 61.1 0.9 27 21-47 17-45 (198)
316 3m6a_A ATP-dependent protease 93.6 0.014 4.8E-07 71.7 0.5 33 29-67 110-142 (543)
317 4ag6_A VIRB4 ATPase, type IV s 93.6 0.023 7.9E-07 67.0 2.3 36 29-70 37-72 (392)
318 2qag_C Septin-7; cell cycle, c 93.6 0.0088 3E-07 70.2 -1.3 71 1218-1288 76-175 (418)
319 2dfs_A Myosin-5A; myosin-V, in 93.5 0.79 2.7E-05 60.3 16.7 20 29-48 158-177 (1080)
320 1nlf_A Regulatory protein REPA 93.5 0.036 1.2E-06 61.9 3.7 16 1278-1293 169-184 (279)
321 2p5t_B PEZT; postsegregational 93.5 0.023 7.9E-07 62.3 2.0 19 29-47 34-52 (253)
322 2ewv_A Twitching motility prot 93.4 0.022 7.6E-07 66.1 1.7 53 1247-1307 199-256 (372)
323 1vht_A Dephospho-COA kinase; s 93.4 0.029 1E-06 59.9 2.6 19 29-47 6-24 (218)
324 1gvn_B Zeta; postsegregational 93.4 0.028 9.7E-07 62.7 2.5 19 29-47 35-53 (287)
325 1gtv_A TMK, thymidylate kinase 93.4 0.018 6.2E-07 61.4 0.8 20 29-48 2-21 (214)
326 1gxl_A SMC, chromosome segrega 93.3 0.00025 8.4E-09 76.1 -14.1 144 555-707 10-168 (213)
327 1lv7_A FTSH; alpha/beta domain 93.3 0.033 1.1E-06 61.3 2.8 28 23-50 40-68 (257)
328 2fxo_A Myosin heavy chain, car 93.3 5.4 0.00018 37.7 17.6 53 343-395 71-123 (129)
329 2dy1_A Elongation factor G; tr 93.3 0.043 1.5E-06 69.0 4.1 22 29-50 11-32 (665)
330 2jaq_A Deoxyguanosine kinase; 93.2 0.034 1.2E-06 58.7 2.6 23 29-51 2-24 (205)
331 1kht_A Adenylate kinase; phosp 93.2 0.035 1.2E-06 57.9 2.6 23 29-51 5-27 (192)
332 1m2o_B GTP-binding protein SAR 93.2 0.049 1.7E-06 56.7 3.7 27 21-47 15-43 (190)
333 3k53_A Ferrous iron transport 92.9 0.037 1.3E-06 61.4 2.5 23 29-55 5-27 (271)
334 2rhm_A Putative kinase; P-loop 92.9 0.039 1.3E-06 57.6 2.6 23 29-51 7-29 (193)
335 1q3t_A Cytidylate kinase; nucl 92.9 0.039 1.3E-06 59.7 2.7 23 29-51 18-40 (236)
336 3l51_A Structural maintenance 92.9 0.00023 7.9E-09 71.8 -14.0 118 585-707 15-145 (161)
337 3trf_A Shikimate kinase, SK; a 92.8 0.042 1.4E-06 56.9 2.6 24 28-51 6-29 (185)
338 3iij_A Coilin-interacting nucl 92.7 0.044 1.5E-06 56.4 2.6 24 28-51 12-35 (180)
339 1uf9_A TT1252 protein; P-loop, 92.6 0.045 1.5E-06 57.7 2.5 19 29-47 10-28 (203)
340 1nks_A Adenylate kinase; therm 92.6 0.045 1.5E-06 57.1 2.5 23 29-51 3-25 (194)
341 3kl4_A SRP54, signal recogniti 92.4 0.031 1.1E-06 65.6 1.0 43 172-215 265-307 (433)
342 2z0h_A DTMP kinase, thymidylat 92.2 0.056 1.9E-06 56.6 2.6 22 29-50 2-23 (197)
343 3ake_A Cytidylate kinase; CMP 92.0 0.06 2.1E-06 56.9 2.6 20 29-48 4-23 (208)
344 2ged_A SR-beta, signal recogni 92.0 0.062 2.1E-06 56.0 2.6 19 29-47 50-68 (193)
345 2c95_A Adenylate kinase 1; tra 92.0 0.061 2.1E-06 56.2 2.6 23 29-51 11-33 (196)
346 2fxo_A Myosin heavy chain, car 92.0 8.4 0.00029 36.4 17.1 37 350-386 85-121 (129)
347 1fzq_A ADP-ribosylation factor 92.0 0.066 2.2E-06 55.2 2.7 19 29-47 18-36 (181)
348 1e6c_A Shikimate kinase; phosp 91.9 0.065 2.2E-06 54.7 2.6 23 29-51 4-26 (173)
349 1s96_A Guanylate kinase, GMP k 91.9 0.048 1.6E-06 57.9 1.7 70 1218-1295 63-145 (219)
350 1tev_A UMP-CMP kinase; ploop, 91.8 0.066 2.2E-06 55.9 2.6 23 29-51 5-27 (196)
351 3q72_A GTP-binding protein RAD 91.8 0.072 2.5E-06 53.8 2.8 19 29-47 4-22 (166)
352 3b1v_A Ferrous iron uptake tra 91.8 0.065 2.2E-06 59.1 2.6 22 29-54 5-26 (272)
353 2w58_A DNAI, primosome compone 91.7 0.06 2.1E-06 56.6 2.2 24 28-51 55-78 (202)
354 2grj_A Dephospho-COA kinase; T 91.7 0.072 2.5E-06 55.2 2.6 22 29-50 14-35 (192)
355 2vli_A Antibiotic resistance p 91.6 0.061 2.1E-06 55.5 2.0 20 29-48 7-26 (183)
356 2ius_A DNA translocase FTSK; n 91.6 0.15 5E-06 61.1 5.5 31 21-51 158-191 (512)
357 1jal_A YCHF protein; nucleotid 91.6 0.086 3E-06 60.2 3.4 19 29-47 4-22 (363)
358 2v54_A DTMP kinase, thymidylat 91.5 0.074 2.5E-06 56.0 2.6 20 29-48 6-25 (204)
359 2e87_A Hypothetical protein PH 91.5 0.082 2.8E-06 61.3 3.2 26 26-55 166-191 (357)
360 1sxj_C Activator 1 40 kDa subu 91.5 0.077 2.6E-06 61.1 3.0 23 29-51 48-70 (340)
361 2bwj_A Adenylate kinase 5; pho 91.5 0.074 2.5E-06 55.7 2.6 23 29-51 14-36 (199)
362 2iyv_A Shikimate kinase, SK; t 91.4 0.077 2.6E-06 54.8 2.6 24 28-51 3-26 (184)
363 2efr_A General control protein 91.4 11 0.00037 36.5 23.2 41 913-953 77-117 (155)
364 1qf9_A UMP/CMP kinase, protein 91.3 0.078 2.7E-06 55.2 2.6 20 29-48 8-27 (194)
365 2plr_A DTMP kinase, probable t 91.3 0.079 2.7E-06 56.2 2.6 23 29-51 6-28 (213)
366 2pbr_A DTMP kinase, thymidylat 91.3 0.079 2.7E-06 55.2 2.6 21 29-49 2-22 (195)
367 1zak_A Adenylate kinase; ATP:A 91.3 0.078 2.7E-06 56.7 2.6 23 29-51 7-29 (222)
368 1moz_A ARL1, ADP-ribosylation 91.3 0.072 2.4E-06 54.9 2.2 19 29-47 20-38 (183)
369 1z2a_A RAS-related protein RAB 91.3 0.091 3.1E-06 53.1 2.9 19 29-47 7-25 (168)
370 2pt5_A Shikimate kinase, SK; a 91.2 0.084 2.9E-06 53.5 2.6 23 29-51 2-24 (168)
371 3exa_A TRNA delta(2)-isopenten 91.2 0.083 2.8E-06 58.4 2.6 22 28-49 4-25 (322)
372 3tw8_B RAS-related protein RAB 91.1 0.1 3.5E-06 53.5 3.2 19 29-47 11-29 (181)
373 3q85_A GTP-binding protein REM 91.1 0.091 3.1E-06 53.2 2.7 19 29-47 4-22 (169)
374 3fb4_A Adenylate kinase; psych 91.1 0.086 2.9E-06 56.1 2.6 20 29-48 2-21 (216)
375 1ukz_A Uridylate kinase; trans 91.1 0.088 3E-06 55.4 2.6 20 29-48 17-36 (203)
376 2wwf_A Thymidilate kinase, put 91.1 0.086 2.9E-06 55.9 2.6 23 29-51 12-34 (212)
377 2nzj_A GTP-binding protein REM 91.0 0.092 3.1E-06 53.5 2.7 19 29-47 6-24 (175)
378 3a4m_A L-seryl-tRNA(SEC) kinas 91.0 0.086 3E-06 57.9 2.6 23 29-51 6-28 (260)
379 1ek0_A Protein (GTP-binding pr 91.0 0.098 3.4E-06 52.9 2.9 19 29-47 5-23 (170)
380 1a7j_A Phosphoribulokinase; tr 91.0 0.069 2.4E-06 59.6 1.8 23 29-51 7-29 (290)
381 2ce2_X GTPase HRAS; signaling 91.0 0.098 3.4E-06 52.6 2.8 19 29-47 5-23 (166)
382 1zd8_A GTP:AMP phosphotransfer 91.0 0.088 3E-06 56.6 2.6 21 29-49 9-29 (227)
383 1z0j_A RAB-22, RAS-related pro 91.0 0.1 3.4E-06 52.9 2.9 19 29-47 8-26 (170)
384 2erx_A GTP-binding protein DI- 90.9 0.11 3.9E-06 52.6 3.2 19 29-47 5-23 (172)
385 1gxj_A SMC, chromosome segrega 90.9 0.00037 1.3E-08 72.8 -15.9 129 570-707 16-156 (186)
386 2dyk_A GTP-binding protein; GT 90.9 0.091 3.1E-06 52.7 2.4 19 29-47 3-21 (161)
387 2cxx_A Probable GTP-binding pr 90.9 0.11 3.8E-06 53.8 3.2 19 29-47 3-21 (190)
388 1wf3_A GTP-binding protein; GT 90.8 0.089 3E-06 59.1 2.5 23 25-47 5-27 (301)
389 2xb4_A Adenylate kinase; ATP-b 90.8 0.094 3.2E-06 56.1 2.6 23 29-51 2-24 (223)
390 3d3q_A TRNA delta(2)-isopenten 90.8 0.094 3.2E-06 59.1 2.6 23 29-51 9-31 (340)
391 1kao_A RAP2A; GTP-binding prot 90.8 0.11 3.7E-06 52.4 2.9 19 29-47 5-23 (167)
392 1c1y_A RAS-related protein RAP 90.7 0.11 3.7E-06 52.4 2.9 19 29-47 5-23 (167)
393 3dl0_A Adenylate kinase; phosp 90.7 0.098 3.4E-06 55.7 2.6 19 29-47 2-20 (216)
394 2lkc_A Translation initiation 90.7 0.12 4.1E-06 52.8 3.2 19 29-47 10-28 (178)
395 1nn5_A Similar to deoxythymidy 90.7 0.098 3.4E-06 55.6 2.6 23 29-51 11-33 (215)
396 3cf0_A Transitional endoplasmi 90.7 0.096 3.3E-06 59.0 2.6 20 29-48 51-70 (301)
397 1ky3_A GTP-binding protein YPT 90.6 0.11 3.8E-06 53.3 2.9 19 29-47 10-28 (182)
398 2qnr_A Septin-2, protein NEDD5 90.6 0.025 8.7E-07 63.6 -2.3 44 1244-1291 118-168 (301)
399 1svi_A GTP-binding protein YSX 90.6 0.099 3.4E-06 54.5 2.5 20 28-47 24-43 (195)
400 1wms_A RAB-9, RAB9, RAS-relate 90.6 0.11 3.8E-06 53.0 2.8 19 29-47 9-27 (177)
401 1z6g_A Guanylate kinase; struc 90.6 0.0071 2.4E-07 64.7 -6.6 56 1242-1297 125-201 (218)
402 1z08_A RAS-related protein RAB 90.5 0.11 3.8E-06 52.5 2.8 19 29-47 8-26 (170)
403 1u8z_A RAS-related protein RAL 90.5 0.12 4E-06 52.2 2.9 19 29-47 6-24 (168)
404 2cdn_A Adenylate kinase; phosp 90.5 0.11 3.6E-06 54.7 2.6 23 29-51 22-44 (201)
405 4fcw_A Chaperone protein CLPB; 90.4 0.074 2.5E-06 60.4 1.4 23 29-51 49-71 (311)
406 2dpy_A FLII, flagellum-specifi 90.4 0.071 2.4E-06 63.1 1.3 79 1217-1310 213-331 (438)
407 1g16_A RAS-related protein SEC 90.4 0.11 3.8E-06 52.6 2.6 19 29-47 5-23 (170)
408 2f6r_A COA synthase, bifunctio 90.4 0.1 3.6E-06 57.9 2.5 20 29-48 77-96 (281)
409 3iev_A GTP-binding protein ERA 90.4 0.11 3.7E-06 58.7 2.7 20 28-47 11-30 (308)
410 3pqc_A Probable GTP-binding pr 90.4 0.11 3.7E-06 54.1 2.5 19 29-47 25-43 (195)
411 2qmh_A HPR kinase/phosphorylas 90.3 0.13 4.5E-06 52.5 3.0 20 28-47 35-54 (205)
412 2ga8_A Hypothetical 39.9 kDa p 90.3 0.12 4.2E-06 58.2 3.0 23 29-51 26-48 (359)
413 2jeo_A Uridine-cytidine kinase 90.3 0.12 4E-06 56.3 2.8 51 1245-1297 122-173 (245)
414 2zr9_A Protein RECA, recombina 90.3 0.087 3E-06 60.4 1.8 22 29-50 63-84 (349)
415 3lxw_A GTPase IMAP family memb 90.2 0.13 4.4E-06 56.0 3.1 23 29-55 23-45 (247)
416 3crm_A TRNA delta(2)-isopenten 90.2 0.11 3.9E-06 58.0 2.6 21 29-49 7-27 (323)
417 3t1o_A Gliding protein MGLA; G 90.2 0.11 3.6E-06 54.3 2.3 24 29-56 16-39 (198)
418 2wd5_A Structural maintenance 90.2 0.00075 2.6E-08 73.0 -14.8 115 583-707 50-179 (233)
419 3ice_A Transcription terminati 90.1 0.092 3.2E-06 59.4 1.8 26 22-47 166-194 (422)
420 1zuh_A Shikimate kinase; alpha 90.1 0.12 4.2E-06 52.3 2.6 24 28-51 8-31 (168)
421 3iby_A Ferrous iron transport 90.1 0.12 4E-06 56.6 2.5 23 28-54 2-24 (256)
422 3t5d_A Septin-7; GTP-binding p 90.1 0.13 4.3E-06 57.1 2.9 19 29-47 10-28 (274)
423 4dsu_A GTPase KRAS, isoform 2B 90.0 0.14 4.6E-06 53.0 2.9 19 29-47 6-24 (189)
424 1uj2_A Uridine-cytidine kinase 90.0 0.12 4.1E-06 56.5 2.6 23 29-51 24-46 (252)
425 1upt_A ARL1, ADP-ribosylation 90.0 0.18 6E-06 51.1 3.7 19 29-47 9-27 (171)
426 1ypw_A Transitional endoplasmi 90.0 0.09 3.1E-06 67.8 1.8 24 29-56 240-263 (806)
427 1fnn_A CDC6P, cell division co 90.0 0.13 4.3E-06 60.6 2.9 25 29-57 46-70 (389)
428 3cbq_A GTP-binding protein REM 89.9 0.12 4.1E-06 53.9 2.5 19 29-47 25-43 (195)
429 3bos_A Putative DNA replicatio 89.9 0.12 4.2E-06 55.9 2.6 23 29-51 54-76 (242)
430 1aky_A Adenylate kinase; ATP:A 89.9 0.13 4.3E-06 55.0 2.6 23 29-51 6-28 (220)
431 2y8e_A RAB-protein 6, GH09086P 89.9 0.14 4.7E-06 52.4 2.8 19 29-47 16-34 (179)
432 3foz_A TRNA delta(2)-isopenten 89.8 0.13 4.4E-06 56.8 2.6 22 29-50 12-33 (316)
433 1r8s_A ADP-ribosylation factor 89.8 0.2 6.9E-06 50.2 3.9 19 30-48 3-21 (164)
434 2fn4_A P23, RAS-related protei 89.8 0.13 4.5E-06 52.6 2.6 19 29-47 11-29 (181)
435 2dby_A GTP-binding protein; GD 89.7 0.11 3.8E-06 59.7 2.1 19 29-47 3-21 (368)
436 2oil_A CATX-8, RAS-related pro 89.7 0.13 4.6E-06 53.4 2.6 19 29-47 27-45 (193)
437 1r2q_A RAS-related protein RAB 89.7 0.14 4.8E-06 51.7 2.6 19 29-47 8-26 (170)
438 1jbk_A CLPB protein; beta barr 89.6 0.18 6.2E-06 52.2 3.5 25 29-53 45-69 (195)
439 3n70_A Transport activator; si 89.6 0.19 6.4E-06 49.5 3.4 19 29-47 26-44 (145)
440 3b9p_A CG5977-PA, isoform A; A 89.6 0.13 4.5E-06 57.9 2.6 21 29-49 56-76 (297)
441 2bme_A RAB4A, RAS-related prot 89.5 0.15 5.2E-06 52.5 2.8 19 29-47 12-30 (186)
442 1nrj_B SR-beta, signal recogni 89.5 0.14 4.9E-06 54.4 2.7 19 29-47 14-32 (218)
443 1jwy_B Dynamin A GTPase domain 89.5 0.14 4.7E-06 58.3 2.6 28 24-55 21-48 (315)
444 3ihw_A Centg3; RAS, centaurin, 89.5 0.14 5E-06 52.7 2.6 19 29-47 22-40 (184)
445 2p65_A Hypothetical protein PF 89.5 0.23 7.9E-06 51.0 4.2 25 29-53 45-69 (187)
446 2hxs_A RAB-26, RAS-related pro 89.4 0.14 4.8E-06 52.3 2.5 19 29-47 8-26 (178)
447 1e4v_A Adenylate kinase; trans 89.4 0.14 4.9E-06 54.3 2.6 22 30-51 3-24 (214)
448 3llm_A ATP-dependent RNA helic 89.4 0.14 4.9E-06 55.2 2.6 19 29-47 78-96 (235)
449 1m7b_A RND3/RHOE small GTP-bin 89.4 0.15 5.3E-06 52.4 2.8 19 29-47 9-27 (184)
450 3llu_A RAS-related GTP-binding 89.4 0.15 5.2E-06 53.2 2.7 24 29-56 22-45 (196)
451 3a1s_A Iron(II) transport prot 89.3 0.15 5E-06 55.9 2.6 19 29-47 7-25 (258)
452 1ksh_A ARF-like protein 2; sma 89.2 0.16 5.5E-06 52.3 2.8 19 29-47 20-38 (186)
453 2fv8_A H6, RHO-related GTP-bin 89.2 0.14 5E-06 53.9 2.4 34 14-47 9-45 (207)
454 3bc1_A RAS-related protein RAB 89.2 0.15 5.3E-06 52.8 2.6 19 29-47 13-31 (195)
455 3tlx_A Adenylate kinase 2; str 89.2 0.15 5.2E-06 55.2 2.6 20 29-48 31-50 (243)
456 3kkq_A RAS-related protein M-R 89.1 0.17 5.9E-06 51.9 2.9 19 29-47 20-38 (183)
457 3tqf_A HPR(Ser) kinase; transf 89.1 0.17 5.8E-06 50.2 2.6 19 29-47 18-36 (181)
458 3con_A GTPase NRAS; structural 89.1 0.16 5.5E-06 52.6 2.6 19 29-47 23-41 (190)
459 1ltq_A Polynucleotide kinase; 89.1 0.15 5.2E-06 57.5 2.6 19 29-47 4-22 (301)
460 2il1_A RAB12; G-protein, GDP, 89.0 0.17 5.9E-06 52.5 2.8 19 29-47 28-46 (192)
461 1z0f_A RAB14, member RAS oncog 89.0 0.18 6E-06 51.5 2.8 19 29-47 17-35 (179)
462 3cnl_A YLQF, putative uncharac 89.0 0.17 5.9E-06 55.3 2.9 24 29-56 101-124 (262)
463 2g6b_A RAS-related protein RAB 88.9 0.17 5.8E-06 51.8 2.6 19 29-47 12-30 (180)
464 3clv_A RAB5 protein, putative; 88.9 0.17 5.7E-06 53.1 2.6 19 29-47 9-27 (208)
465 3ghg_A Fibrinogen alpha chain; 88.9 7.5 0.00026 44.5 15.7 20 1256-1275 387-406 (562)
466 2fg5_A RAB-22B, RAS-related pr 88.9 0.18 6.1E-06 52.4 2.8 19 29-47 25-43 (192)
467 1l8q_A Chromosomal replication 88.9 0.16 5.5E-06 58.0 2.6 23 29-51 39-61 (324)
468 2ew1_A RAS-related protein RAB 88.8 0.18 6.3E-06 52.8 2.8 19 29-47 28-46 (201)
469 3i8s_A Ferrous iron transport 88.8 0.16 5.5E-06 56.2 2.5 22 29-54 5-26 (274)
470 2a9k_A RAS-related protein RAL 88.8 0.17 5.9E-06 52.0 2.6 19 29-47 20-38 (187)
471 2efe_B Small GTP-binding prote 88.8 0.17 5.9E-06 51.8 2.6 19 29-47 14-32 (181)
472 2xtp_A GTPase IMAP family memb 88.8 0.16 5.5E-06 55.8 2.5 19 29-47 24-42 (260)
473 2bov_A RAla, RAS-related prote 88.8 0.17 5.9E-06 53.1 2.6 19 29-47 16-34 (206)
474 3tkl_A RAS-related protein RAB 88.8 0.19 6.4E-06 52.3 2.9 19 29-47 18-36 (196)
475 2iwr_A Centaurin gamma 1; ANK 88.7 0.23 7.8E-06 50.7 3.4 19 29-47 9-27 (178)
476 3t5g_A GTP-binding protein RHE 88.7 0.18 6E-06 51.8 2.6 19 29-47 8-26 (181)
477 2h57_A ADP-ribosylation factor 88.7 0.17 5.7E-06 52.5 2.4 19 29-47 23-41 (190)
478 3ec2_A DNA replication protein 88.6 0.39 1.3E-05 49.2 5.2 36 1255-1290 98-143 (180)
479 2ce7_A Cell division protein F 88.6 0.15 5E-06 60.9 2.1 25 24-48 45-70 (476)
480 1vg8_A RAS-related protein RAB 88.6 0.19 6.5E-06 52.9 2.8 19 29-47 10-28 (207)
481 2o52_A RAS-related protein RAB 88.6 0.18 6E-06 52.9 2.5 19 29-47 27-45 (200)
482 2gf9_A RAS-related protein RAB 88.6 0.18 6.3E-06 52.1 2.6 19 29-47 24-42 (189)
483 2z4s_A Chromosomal replication 88.5 0.17 5.8E-06 60.3 2.6 23 29-51 132-154 (440)
484 3eph_A TRNA isopentenyltransfe 88.5 0.17 6E-06 58.0 2.5 24 28-51 3-26 (409)
485 1mh1_A RAC1; GTP-binding, GTPa 88.5 0.19 6.4E-06 51.7 2.6 19 29-47 7-25 (186)
486 2gf0_A GTP-binding protein DI- 88.5 0.2 6.8E-06 52.3 2.8 19 29-47 10-28 (199)
487 2qu8_A Putative nucleolar GTP- 88.4 0.19 6.7E-06 53.8 2.8 19 29-47 31-49 (228)
488 3oes_A GTPase rhebl1; small GT 88.4 0.2 6.9E-06 52.4 2.8 19 29-47 26-44 (201)
489 3dm5_A SRP54, signal recogniti 88.4 0.2 6.9E-06 58.6 3.0 42 173-215 267-308 (443)
490 2wsm_A Hydrogenase expression/ 88.3 0.19 6.3E-06 53.7 2.5 24 28-51 31-54 (221)
491 2cjw_A GTP-binding protein GEM 88.3 0.2 6.7E-06 52.1 2.6 19 29-47 8-26 (192)
492 3a8t_A Adenylate isopentenyltr 88.2 0.21 7.2E-06 56.0 2.9 19 29-47 42-60 (339)
493 1zbd_A Rabphilin-3A; G protein 88.2 0.24 8.3E-06 51.9 3.3 19 29-47 10-28 (203)
494 2bcg_Y Protein YP2, GTP-bindin 88.2 0.21 7.2E-06 52.5 2.8 19 29-47 10-28 (206)
495 2h17_A ADP-ribosylation factor 88.1 0.19 6.4E-06 51.6 2.3 19 29-47 23-41 (181)
496 2b6h_A ADP-ribosylation factor 88.1 0.21 7.3E-06 51.8 2.7 19 29-47 31-49 (192)
497 1zj6_A ADP-ribosylation factor 88.1 0.2 6.9E-06 51.7 2.5 19 29-47 18-36 (187)
498 3reg_A RHO-like small GTPase; 88.1 0.29 9.9E-06 50.8 3.8 34 30-67 26-59 (194)
499 3bwd_D RAC-like GTP-binding pr 88.0 0.21 7.1E-06 51.2 2.6 18 30-47 11-28 (182)
500 4edh_A DTMP kinase, thymidylat 88.0 0.21 7.2E-06 52.7 2.6 19 29-47 8-26 (213)
No 1
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=99.79 E-value=1.9e-20 Score=200.05 Aligned_cols=189 Identities=19% Similarity=0.293 Sum_probs=135.2
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|.+|.|.||++|.+ ..|+|+.++++|+||||||||||++||.|+|+|. +.. ++. .. ...+
T Consensus 1 M~i~~l~i~nf~~~~~---~~i~f~~~~~~I~G~NgsGKStil~ai~~~l~g~--~~~-r~~------~~----~~~i-- 62 (203)
T 3qks_A 1 MKLERVTVKNFRSHSD---TVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWP--LRI-KDI------KK----DEFT-- 62 (203)
T ss_dssp CEEEEEEEESBTTBSS---EEEECCSEEEEEECCTTSSHHHHHHHHHHHHHTT--SCC-TTC------CH----HHHH--
T ss_pred CEEEEEEEECCcCccc---eEEEeCCCeEEEEcCCCCCHHHHHHHHHHHhcCC--ccc-ccc------cc----hhhh--
Confidence 6788999999999973 5789998899999999999999999999999983 221 221 00 0011
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCcee-ee--ccccchhh
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQK-NL--GCLQQESV 158 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~-~~--~~~q~~~~ 158 (1491)
+.....+.|.+.|.+ ++..|+|.|.+.++++.+.. ... .+. .+|.+. .. ++. +++
T Consensus 63 -----------~~~~~~~~v~l~f~~-~~~~~~i~R~~~~~~~~~~~-----~~~--~~~-~~g~~~~~~~~~~~--~v~ 120 (203)
T 3qks_A 63 -----------KVGARDTYIDLIFEK-DGTKYRITRRFLKGYSSGEI-----HAM--KRL-VGNEWKHVTEPSSK--AIS 120 (203)
T ss_dssp -----------TSCSSCEEEEEEEEE-TTEEEEEEEEEECSSSCEEE-----EEE--EEE-ETTEEEESSCSSHH--HHH
T ss_pred -----------ccCCCcEEEEEEEEE-CCEEEEEEEEEEcCCCCCcc-----ceE--EEE-cCCceeeeccCChH--HHH
Confidence 111223567777874 67789999998754211110 111 222 446443 22 455 888
Q ss_pred HHhHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhhhhHHHHHHHHHhHh
Q psy9513 159 LEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLN 236 (1491)
Q Consensus 159 ~~i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k~~~~~~~~~~~~l~ 236 (1491)
..|..++| .++|.+++|++||++.+++..+++++++|+++||++.|.+..+.+++ ..++.+..++.++..+.
T Consensus 121 ~~i~~ll~--~~~f~~~~~l~Qg~~~~~l~~~~er~~~l~~i~g~~~~~~~~~~l~~----~~~~~~~~~~~l~~~~~ 192 (203)
T 3qks_A 121 AFMEKLIP--YNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSE----LKKTINNRIKEYRDILA 192 (203)
T ss_dssp HHHHHHSC--HHHHHHTTEECTTHHHHHHHCHHHHHHHHHHHTCCCTTHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--HHHhhEEEEEcCCcHHHHHhCcHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 88888854 58899999999999999887669999999999999999999999999 77766666655554443
No 2
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.66 E-value=1.4e-16 Score=188.08 Aligned_cols=168 Identities=18% Similarity=0.298 Sum_probs=120.7
Q ss_pred CCcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
||.+..|+|+||++|. ...|+|+.++++|+||||||||||++||+|+|+|. +... . ...+
T Consensus 2 ~M~l~~L~l~nFr~~~---~~~i~f~~gl~vi~G~NGaGKT~ileAI~~~l~g~-~r~~--~-----~~~~--------- 61 (371)
T 3auy_A 2 SMILKEIRMNNFKSHV---NSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGA-GSNF--N-----YDTI--------- 61 (371)
T ss_dssp CEEEEEEEEEEETTEE---EEEEECCSEEEEEEECTTSSHHHHHHHHHHHHHCC-C-CC--C-----TTTT---------
T ss_pred CcEEeEEEEEcccccc---ceEEecCCCeEEEECCCCCCHHHHHHHHHHHHcCC-CCcc--c-----hHhh---------
Confidence 5888999999999995 36889999999999999999999999999999997 2211 0 0111
Q ss_pred cCccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHH
Q psy9513 81 SGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLE 160 (1491)
Q Consensus 81 ~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~ 160 (1491)
.......+.|.+.|. .++..|.|.|.. . .|+.. +. .+ .+|...+.... ++...
T Consensus 62 -----------ir~g~~~~~V~~~f~-~~~~~~~i~r~~-~---~g~~~-----~~--~~--~ng~~~~~~~~--~~~~~ 114 (371)
T 3auy_A 62 -----------ITKGKKSVYVELDFE-VNGNNYKIIREY-D---SGRGG-----AK--LY--KNGKPYATTIS--AVNKA 114 (371)
T ss_dssp -----------BCTTCSEEEEEEEEE-ETTEEEEEEEEE-E---TTEEE-----EE--EE--ETTEEEECSHH--HHHHH
T ss_pred -----------ccCCCCcEEEEEEEE-ECCEEEEEEEEE-c---CCCCc-----eE--EE--ECCEeecccHH--HHHHH
Confidence 111112245666776 355678888872 1 12210 11 11 23654433335 78888
Q ss_pred hHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 161 MCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 161 i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
+..++|++...|.+++|++||+....+ ..|+.++++||.++|...|......+..
T Consensus 115 l~~i~gl~~~~f~~~v~~~qg~~~~~~~~~~~~Rr~~ld~~~~~~~~~~~~~~~~~ 170 (371)
T 3auy_A 115 VNEILGVDRNMFLNSIYIKQGEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGE 170 (371)
T ss_dssp HHHHHCSCHHHHHHHHEECTTHHHHHHHSCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHhCceeeecCccHHHHHhcCHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 899999999999999999999864433 5899999999999999888777776666
No 3
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.58 E-value=3e-15 Score=170.73 Aligned_cols=126 Identities=15% Similarity=0.201 Sum_probs=101.8
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-HH-
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-RI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~l- 1243 (1491)
+..+||-++++++ +|+ +.+|+..+..+....+ +.+| ..+|||||++.+++.+++.+|+.++ .+
T Consensus 64 GaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~-----~~~r-----~~Ig~v~Q~~~l~~~~TV~env~~~~~~~ 133 (366)
T 3tui_C 64 GAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL-----TKAR-----RQIGMIFQHFNLLSSRTVFGNVALPLELD 133 (366)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH-----HHHH-----TTEEEECSSCCCCTTSCHHHHHHHHHHHS
T ss_pred CchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-----HHHh-----CcEEEEeCCCccCCCCCHHHHHHHHHHhc
Confidence 3467888887777 443 7788888876655333 1112 2599999999999999999997331 10
Q ss_pred ----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1244 ----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1244 ----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
++||++|||||+.+|++|||||||+|||+.+. . ...
T Consensus 134 ~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~ 213 (366)
T 3tui_C 134 NTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213 (366)
T ss_dssp CCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999987 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++..+| |++++|.+|
T Consensus 214 g~Tii~vTHdl~~~~~~a----Drv~vl~~G 240 (366)
T 3tui_C 214 GLTILLITHEMDVVKRIC----DCVAVISNG 240 (366)
T ss_dssp CCEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 4
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.57 E-value=7.5e-15 Score=171.76 Aligned_cols=175 Identities=18% Similarity=0.255 Sum_probs=120.7
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.+|++.||++|. ..+|+|..++++|+||||||||||++||+|+|+|..+.....+... .
T Consensus 1 M~~~~l~~~~f~~~~---~~~i~~~~g~~~i~G~NGaGKTTll~ai~~al~g~~~r~~~~~~~~-----~---------- 62 (365)
T 3qf7_A 1 MRPERLTVRNFLGLK---NVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYV-----N---------- 62 (365)
T ss_dssp CEEEEEEEEEETTEE---EEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSCCSSCSSGGGGB-----C----------
T ss_pred CeeEEEEEeCccCcc---ceEEecCCCeEEEECCCCCCHHHHHHHHHHHhcCCcccccCcchhh-----h----------
Confidence 567889999998885 2467888779999999999999999999999999643211001100 0
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee--ccccchhhH
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL--GCLQQESVL 159 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~--~~~q~~~~~ 159 (1491)
.........|.+.|. .+|..|.|.|.+.+. .|+. ...+.... .+|....+ ... +++.
T Consensus 63 ----------~~~~~~~~~v~~~f~-~~g~~y~v~R~~~~~--~~~~-----~~~l~~~~-~~~~~~~~~~~~~--~v~~ 121 (365)
T 3qf7_A 63 ----------RNAVDGTARLVFQFE-RGGKRYEIIREINAL--QRKH-----NAKLSEIL-ENGKKAAIAAKPT--SVKQ 121 (365)
T ss_dssp ----------TTCTTCEEEEEEEEE-ETTEEEEEEEEEETT--TTEE-----EEEEEEEC-TTSCEEEEEESHH--HHHH
T ss_pred ----------ccCCCCcEEEEEEEE-ECCEEEEEEEEEecc--CCCC-----ccEEEEEc-CCCceeecccChH--HHHH
Confidence 011111234555665 567789999987531 1211 11222222 45655444 555 8899
Q ss_pred HhHhhhCCcHhhhhcceeeccCCCCCCCC-cchhhHHHHHHhhhhh-hHHHHHHHHHH
Q psy9513 160 EMCNLIGVSKAILNNVIFCHQENSSWPLD-EGKKVKEIFDEIFDAT-KYNKALESIKI 215 (1491)
Q Consensus 160 ~i~~~~g~~~~~~~~~~f~~q~e~~~~l~-~~~~~k~~~~~i~g~~-~~~~~~~~lk~ 215 (1491)
.|..++|++...|.+++|++||++.+++. .|.+++++|+.+|+.. .|....+.++.
T Consensus 122 ~i~~~lgl~~~~f~~~v~l~Qg~~~~~l~~~~~~r~~~l~~lf~~~~~~~~~~~~l~~ 179 (365)
T 3qf7_A 122 EVEKILGIEHRTFIRTVFLPQGEIDKLLISPPSEITEIISDVFQSKETLEKLEKLLKE 179 (365)
T ss_dssp HHHHHHTSCHHHHHHHTEECTTCTTTTTTSCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHhceEEEEcccchHHHHhcChhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999998884 7899999999999964 44333333333
No 5
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=99.57 E-value=9.2e-16 Score=162.26 Aligned_cols=173 Identities=22% Similarity=0.283 Sum_probs=99.5
Q ss_pred CCcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
||.|.+|+|.||++|++ ....++|..++++|+||||||||||++||.|+|+|.. |..+..+ .. ...++
T Consensus 1 mM~i~~l~i~nf~~~~~-~~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~~~~------~~~~~~~-~~----~~~i~ 68 (182)
T 3kta_A 1 MPYIEKLELKGFKSYGN-KKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLS------AKAMRAS-RI----SDLIF 68 (182)
T ss_dssp -CEEEEEEEESBGGGCS-SCEEEECCSSEEEEEECTTSSHHHHHHHHHHHTTCCC------TGGGTCS-SG----GGGBC
T ss_pred CceEEEEEEeCeEeecC-ccEEEecCCCcEEEECCCCCCHHHHHHHHHHHHcCCc------ccccccc-cc----hheee
Confidence 89999999999999952 1256788878999999999999999999999996532 2111100 10 00000
Q ss_pred cCccccccCCCCCCccHHHHHHhhcccc------CCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeecccc
Q psy9513 81 SGKNFVHDPRIGKKDETHAIVKLQCTCE------NNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQ 154 (1491)
Q Consensus 81 ~~~~~~q~~~~~~~~~~~~~v~~~~~~~------~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q 154 (1491)
.+. ........+.|.++|+++ .+..++|.|.+... |. ..+.+ +|...+ ..
T Consensus 69 ~~~-------~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~i~r~~~~~---~~--------~~~~i---~g~~~~--~~- 124 (182)
T 3kta_A 69 AGS-------KNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPD---GR--------SSYWL---NGRRAT--RS- 124 (182)
T ss_dssp CCC-----------CCSCEEEEEEEECTTCCSSSSSSEEEEEEEECTT---SC--------EEEEE---TTEEEC--HH-
T ss_pred ccc-------ccCCCCceEEEEEEEeCCCcccccCCcEEEEEEEEEeC---Cc--------EEEEE---CCeEcC--HH-
Confidence 000 000011234566666654 33468888877422 21 11122 354322 22
Q ss_pred chhhHHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHH
Q psy9513 155 QESVLEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIK 214 (1491)
Q Consensus 155 ~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk 214 (1491)
++...+ ..+|++.+.+. |++||+....+ ..|.+++.+||.++|+..|....+.+.
T Consensus 125 -~~~~~l-~~~~l~~~~~~---~~~qg~~~~l~~~~~~~r~~~ld~~~g~~~~~~~~~~~~ 180 (182)
T 3kta_A 125 -EILDIL-TAAMISPDGYN---IVLQGDITKFIKMSPLERRLLIDDISGIAEYDSKKEKAL 180 (182)
T ss_dssp -HHHHHH-HHTTCCTTCTT---EECTTCTTHHHHSCHHHHHHHHHHHHTC-----------
T ss_pred -HHHHHH-HHcCCCCCCCE---EEEcccHHHHHhCCHHHHHHHHHHHHChHHHHHHHHHHh
Confidence 454444 44677776553 68899987754 489999999999999999976555443
No 6
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=99.56 E-value=9.2e-16 Score=154.41 Aligned_cols=141 Identities=19% Similarity=0.253 Sum_probs=95.2
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.+|++.||++|.+ ..|+|+.++++|+||||||||||++||.|+|+|..++. +. .. ..+
T Consensus 1 M~i~~l~i~nf~~~~~---~~i~f~~g~~~I~G~NGsGKStil~Ai~~~l~g~~~~r---~~-~~--~~~---------- 61 (149)
T 1f2t_A 1 MKLERVTVKNFRSHSD---TVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIK---DI-KK--DEF---------- 61 (149)
T ss_dssp CEEEEEEEESBTTBSS---EEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSSCCT---TS-SC--CCS----------
T ss_pred CEEEEEEEeCcccCcc---eEEEcCCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc---cC-CH--HHh----------
Confidence 6678999999999963 57889888999999999999999999999998853221 21 00 011
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCC--Cc-eeee--cc-ccc
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFAT--GV-QKNL--GC-LQQ 155 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~--g~-~~~~--~~-~q~ 155 (1491)
.......+.|.+.|. .++..|++.|++.+. +. ...+... .+ |. +..+ +. .
T Consensus 62 ----------~~~~~~~~~v~~~f~-~~~~~~~i~R~~~~~---~~------~~~~~~~--~~~~~~~~~~~~~~~~~-- 117 (149)
T 1f2t_A 62 ----------TKVGARDTYIDLIFE-KDGTKYRITRRFLKG---YS------SGEIHAM--KRLVGNEWKHVTEPSSK-- 117 (149)
T ss_dssp ----------CSTTCCCEEEEEEEE-ETTEEEEEEEEECCC-------------EEEEE--EEEETTEEEESSCSSHH--
T ss_pred ----------eecCCCcEEEEEEEE-ECCEEEEEEEEEcCC---CC------ceEEEEE--eccCCCceEEcccCchH--
Confidence 111112355677775 567789999998632 11 1111111 12 32 2222 34 5
Q ss_pred hhhHHhHhhhCCcHhhhhcceeeccCCCCCCC
Q psy9513 156 ESVLEMCNLIGVSKAILNNVIFCHQENSSWPL 187 (1491)
Q Consensus 156 ~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l 187 (1491)
+++..+.. + ++.+.|.+++|++||++..++
T Consensus 118 ~v~~~i~~-l-l~~~~f~~~~~i~QG~~~~~l 147 (149)
T 1f2t_A 118 AISAFMEK-L-IPYNIFLNAIYIRQGQIDAIL 147 (149)
T ss_dssp HHHHHHHH-H-SCHHHHHHHTEECTTHHHHHT
T ss_pred HHHHHHHH-H-cCHHHhhheEEEcCcCHHHHh
Confidence 89899999 8 999999999999999865443
No 7
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.53 E-value=9e-16 Score=164.46 Aligned_cols=192 Identities=18% Similarity=0.138 Sum_probs=113.1
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+..|.+.||.+|.+ .+++|...+++|+||||||||||++||.|++ +|.+ |.|.++|..+.+..... .
T Consensus 5 ~k~~~l~l~~~~~~~~---~~~~~~~~~~~i~GpnGsGKSTll~~i~g~~----~~~~--G~i~~~g~~~~~~~~~~--~ 73 (227)
T 1qhl_A 5 GKFRSLTLINWNGFFA---RTFDLDELVTTLSGGNGAGKSTTMAAFVTAL----IPDL--TLLHFRNTTEAGATSGS--R 73 (227)
T ss_dssp CEEEEEEEEEETTEEE---EEECHHHHHHHHHSCCSHHHHHHHHHHHHHH----SCCT--TTC-----------------
T ss_pred ceeeEEEEEeeecccC---CEEEEcCcEEEEECCCCCCHHHHHHHHhccc----ccCC--CeEEECCEEcccCCccc--c
Confidence 6677899999976642 2677766699999999999999999995554 6777 99988887662211000 0
Q ss_pred CccccccCCCCCCccHHHHHHhhccc-cCCCceEEE--EeEEEEe-ecCCc---ccc----ccc--cceEeeecCC-Cce
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTC-ENNDTVCVV--RSLLLSN-KNGKD---NCA----TRD--TTISRKIFAT-GVQ 147 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~-~~~~~~~i~--r~~~~~~-~~g~~---~~~----~~~--~~~~~~~~~~-g~~ 147 (1491)
.. .+...+...|.++|.. .++..|.|. |.+.... ..++. .+. ... ....+++..+ |..
T Consensus 74 ~~--------~~~~~~~~~i~~v~~~~~~~~~~~v~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 145 (227)
T 1qhl_A 74 DK--------GLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQA 145 (227)
T ss_dssp -----------CGGGBCSSEEEEEEEEECTTSCEEEEEEEEEECSSTTTCEEEEEEEEESCCTTCCHHHHHEECCSSSCC
T ss_pred cc--------chhhHhhcCcEEEEEeeeCCeEEEEEEEecCHHHhccccccccceeecCCcccccccceEEEEecCCCce
Confidence 00 0111112334455532 233445554 3332110 00000 000 000 0001121011 122
Q ss_pred eeeccccchhhHHhHhhhCCcHhhhhcc-----eeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 148 KNLGCLQQESVLEMCNLIGVSKAILNNV-----IFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 148 ~~~~~~q~~~~~~i~~~~g~~~~~~~~~-----~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
...... ++...|..++|++...|.++ ++++||++..+|..|.++++ |+++||+..|....+.++.
T Consensus 146 ~~~~~~--dv~~~i~~~lGl~~~~F~~~~~y~~v~l~QG~f~~fL~a~~eR~~-l~~l~~~~~y~~~~~~l~~ 215 (227)
T 1qhl_A 146 RVLPLN--ELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSK-FYRLIEASLYGGISSAITR 215 (227)
T ss_dssp EECCHH--HHHHHHHTSTTCEEEECSCHHHHHHHHHHTTSBSSCCCSHHHHHH-HHHHHHHHHSSSCHHHHHH
T ss_pred eecCHH--HHHHHHHHHHCCCHHHhcCccccceEEeccchHHHhhcCHHHHHH-HHHHHCcHHHHHHHHHHHH
Confidence 223455 88899999999999999999 99999999999977889999 9999999999777766666
No 8
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.53 E-value=2.9e-15 Score=174.36 Aligned_cols=174 Identities=18% Similarity=0.297 Sum_probs=116.0
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+.+|++.||++|. ...++|+.++++|+||||||||||++||+|+|+|.... ++. .. ...+
T Consensus 1 M~i~~l~l~nF~~~~---~~~i~f~~~~~~i~G~NGsGKS~lleAi~~~l~~~~~~---~~~------~~----~~~~-- 62 (339)
T 3qkt_A 1 MKLERVTVKNFRSHS---DTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRI---KDI------KK----DEFT-- 62 (339)
T ss_dssp CEEEEEEEEEETTEE---EEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHCSCCC---TTC------CH----HHHB--
T ss_pred CeEEEEEEEcccCcc---CeEEcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccc---CcC------CH----HHHh--
Confidence 578899999999996 25789998899999999999999999999999873211 121 00 0000
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeee-ccccchhhHH
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL-GCLQQESVLE 160 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~-~~~q~~~~~~ 160 (1491)
......+.|.+.|. .++..|.|.|++......|...+ +... .++..... .....++...
T Consensus 63 -----------~~~~~~~~v~~~~~-~~~~~~~i~r~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~v~~~ 122 (339)
T 3qkt_A 63 -----------KVGARDTYIDLIFE-KDGTKYRITRRFLKGYSSGEIHA------MKRL--VGNEWKHVTEPSSKAISAF 122 (339)
T ss_dssp -----------CTTCSEEEEEEEEE-ETTEEEEEEEEEETTCTTSCEEE------EEEE--ETTEEEESSCSSHHHHHHH
T ss_pred -----------cCCCCeEEEEEEEE-ECCEEEEEEEEEecCCCCCcceE------EEEe--cCCceeeccccchHHHHHH
Confidence 01111245666776 45667999998764322222111 0011 12322222 1111145555
Q ss_pred hHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 161 MCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 161 i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
+..+ ++..+|.++++++||++...+..|++++.+|+.++|+..|....+.++.
T Consensus 123 i~~l--~~~~~f~~~~~i~Qg~~~~il~~~~eR~~ll~~l~~~~~~~~~~~~l~~ 175 (339)
T 3qkt_A 123 MEKL--IPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSE 175 (339)
T ss_dssp HHHH--SCHHHHHHHTEECTTCTTGGGSCTTHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred HHHh--cCHHHhhhheEecchhHHHHHhChHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 5554 4567899999999999999888899999999999999999877777655
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.52 E-value=2.1e-14 Score=156.62 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=97.1
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
+..+||=++++++ +| .+.+++..+.......++ .+|+ ..+||+||++.+++++++.+|+.+.
T Consensus 41 GsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~-----~~~~----~~i~~v~Q~~~l~~~~tv~enl~~~~~~~ 111 (235)
T 3tif_A 41 GSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT-----KIRR----DKIGFVFQQFNLIPLLTALENVELPLIFK 111 (235)
T ss_dssp TSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHH-----HHHH----HHEEEECTTCCCCTTSCHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHH-----HHhh----ccEEEEecCCccCCCCcHHHHHHHHHHhh
Confidence 3467787777776 33 367788777665543331 1111 2499999999999999999886321
Q ss_pred ------------HH------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H
Q psy9513 1242 ------------RI------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S 1276 (1491)
Q Consensus 1242 ------------~l------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~ 1276 (1491)
.+ ++||++|||||+.+|++|||||||+|||+.+. .
T Consensus 112 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 191 (235)
T 3tif_A 112 YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191 (235)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 00 68999999999999999999999999999988 2
Q ss_pred hh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. .|.|||+||||++.+ .+| |++++|.+|
T Consensus 192 ~~~~g~tvi~vtHd~~~~-~~~----d~i~~l~~G 221 (235)
T 3tif_A 192 NEEDGKTVVVVTHDINVA-RFG----ERIIYLKDG 221 (235)
T ss_dssp HHHHCCEEEEECSCHHHH-TTS----SEEEEEETT
T ss_pred HHHcCCEEEEEcCCHHHH-HhC----CEEEEEECC
Confidence 23 389999999999965 678 999999887
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.49 E-value=4e-14 Score=162.80 Aligned_cols=121 Identities=16% Similarity=0.170 Sum_probs=97.8
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-HH-
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-RI- 1243 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~l- 1243 (1491)
+..+||-++++++ .|+ +.+|+..+..... ....+||+||++.++++|++.+|+.+. ..
T Consensus 39 GsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~---------------~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 39 GCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP---------------AERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG---------------GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred CchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH---------------HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 3467888888877 333 6677766543322 113599999999999999999997431 10
Q ss_pred ----------------------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1244 ----------------------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1244 ----------------------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
++||++|||||+.+|++|||||||+|||+... . ...
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~ 183 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999877 2 334
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||++++..+| |++++|.+|
T Consensus 184 g~tii~vTHd~~ea~~~a----Dri~vl~~G 210 (381)
T 3rlf_A 184 GRTMIYVTHDQVEAMTLA----DKIVVLDAG 210 (381)
T ss_dssp CCEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 999999999999999999 999999988
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.49 E-value=2.5e-14 Score=163.32 Aligned_cols=125 Identities=17% Similarity=0.171 Sum_probs=97.9
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
+..+||=++++++ .|+ +.+|+..+.+.... .......+||+||++.++++|++.+|+.+.
T Consensus 40 GsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~-----------~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~ 108 (359)
T 3fvq_A 40 GCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN-----------LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG 108 (359)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB-----------CCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS
T ss_pred CchHHHHHHHHhcCCCCCCcEEEECCEECcccccc-----------cchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc
Confidence 3467888888777 333 67777766321110 001123699999999999999999997331
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhhc
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQK 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~ 1279 (1491)
++ ++||++|||||+.+|++|||||||+|||+... ....
T Consensus 109 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~ 188 (359)
T 3fvq_A 109 KGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188 (359)
T ss_dssp SCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 00 68999999999999999999999999999887 2345
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 189 g~tvi~vTHd~~ea~~~a----Dri~vl~~G 215 (359)
T 3fvq_A 189 GKSAVFVSHDREEALQYA----DRIAVMKQG 215 (359)
T ss_dssp TCEEEEECCCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEEeCCHHHHHHHC----CEEEEEECC
Confidence 899999999999999999 999999887
No 12
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.46 E-value=1e-13 Score=153.13 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=94.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH--H--
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV--R-- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~--~-- 1242 (1491)
..+||=++++++ +|+ +.+++..+. ...... ..+| ..+||+||++.+++.+++.+++.+. .
T Consensus 61 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~~~~-----~~~~-----~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~ 129 (263)
T 2olj_A 61 SGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKDTNL-----NKVR-----EEVGMVFQRFNLFPHMTVLNNITLAPMKVR 129 (263)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEESS-STTCCH-----HHHH-----HHEEEECSSCCCCTTSCHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHcCCCCCCcEEEECCEECC-CccccH-----HHHh-----CcEEEEeCCCcCCCCCCHHHHHHHHHHHHc
Confidence 467777777776 332 666766553 111001 0001 2489999999999999999886331 0
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
+ ++||++||+||+.+|++|||||||+|||+.+. ....|
T Consensus 130 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g 209 (263)
T 2olj_A 130 KWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209 (263)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCC
Confidence 0 68999999999999999999999999999988 23448
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||++++..+| |++++|.+|
T Consensus 210 ~tvi~vtHd~~~~~~~~----d~v~~l~~G 235 (263)
T 2olj_A 210 MTMVVVTHEMGFAREVG----DRVLFMDGG 235 (263)
T ss_dssp CEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred CEEEEEcCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999877
No 13
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.45 E-value=1.3e-13 Score=157.74 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=96.2
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H--
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~-- 1242 (1491)
+..+||-++++++ .|+ +.+|+..+..... ....+||+||++.++++|++.+|+.+. .
T Consensus 51 GsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~ 115 (355)
T 1z47_A 51 GSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP---------------QKRNVGLVFQNYALFQHMTVYDNVSFGLREK 115 (355)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG---------------GGSSEEEECGGGCCCTTSCHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh---------------hhCcEEEEecCcccCCCCCHHHHHHHHHHHc
Confidence 3467888887776 332 6666665543211 123699999999999999999987331 1
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||+|||+... . ...
T Consensus 116 ~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 195 (355)
T 1z47_A 116 RVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM 195 (355)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc
Confidence 1 68999999999999999999999999999987 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 196 g~tvi~vTHd~~~a~~~a----dri~vl~~G 222 (355)
T 1z47_A 196 GVTSVFVTHDQEEALEVA----DRVLVLHEG 222 (355)
T ss_dssp TCEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEECCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.44 E-value=1.3e-13 Score=149.25 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=94.6
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-H---
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-R--- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-~--- 1242 (1491)
..+||=++++++ +|+ +.+++..+........ ..+|+ ..+||+||++.+++.+++.+++.++ .
T Consensus 41 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~-----~~~~~----~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~ 111 (224)
T 2pcj_A 41 SGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL-----SLLRN----RKLGFVFQFHYLIPELTALENVIVPMLKMG 111 (224)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHH-----HHHHH----HHEEEECSSCCCCTTSCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHH-----HHHHh----CcEEEEecCcccCCCCCHHHHHHhHHHHcC
Confidence 457777777776 332 6677766654432111 00111 2499999999999999998886321 0
Q ss_pred ---------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1243 ---------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1243 ---------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 112 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~ 191 (224)
T 2pcj_A 112 KPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT 191 (224)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 0 68999999999999999999999999999987 233489
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||+||||++++ .+| |+++.|.+|
T Consensus 192 tvi~vtHd~~~~-~~~----d~v~~l~~G 215 (224)
T 2pcj_A 192 SIVMVTHERELA-ELT----HRTLEMKDG 215 (224)
T ss_dssp EEEEECSCHHHH-TTS----SEEEEEETT
T ss_pred EEEEEcCCHHHH-HhC----CEEEEEECC
Confidence 999999999987 788 999999877
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.44 E-value=8.9e-14 Score=154.26 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=97.2
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
+..+||-++++++ .| .+.+++..+.......+ + ..++|+||++.+++.+++.+++.+.
T Consensus 47 GsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~-----~--------~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 47 GAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKAL-----A--------RTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp TSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHH-----H--------HHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred CCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHH-----h--------heEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 3467888888776 33 37788877765543222 1 1389999999998889988876321
Q ss_pred -------HH-----------------------hhhHHHHHHHhhc------CCCeeEEcCCCCCCChHhH---------H
Q psy9513 1242 -------RI-----------------------VRDHKALAETFSR------NCGIFALDEPTTNLDIKNA---------S 1276 (1491)
Q Consensus 1242 -------~l-----------------------~~~~~~~a~~~~~------~~~~l~lDEp~~~lD~~~~---------~ 1276 (1491)
.+ ++||++|||||+. +|++|||||||+|||+.+. .
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 00 7999999999999 9999999999999999987 2
Q ss_pred hh-cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQ-KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. .+.|||+||||++++..+| |++++|.+|
T Consensus 194 ~~~~~~tvi~vtHdl~~~~~~~----d~v~vl~~G 224 (266)
T 4g1u_C 194 TRQEPLAVCCVLHDLNLAALYA----DRIMLLAQG 224 (266)
T ss_dssp HHHSSEEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred HHcCCCEEEEEEcCHHHHHHhC----CEEEEEECC
Confidence 23 3579999999999999999 999999887
No 16
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.44 E-value=1.8e-13 Score=151.88 Aligned_cols=125 Identities=18% Similarity=0.273 Sum_probs=95.0
Q ss_pred CcccceeEEEEe--cc---ccccccccccc----------hhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHH
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCS----------AGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAID 1236 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~----------~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~ 1236 (1491)
..+||=++++++ +| .+.+++..+.. ...... +.+| ..+||+||++.+++.+++.+
T Consensus 43 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~-----~~i~~v~Q~~~l~~~ltv~e 112 (262)
T 1b0u_A 43 SGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL-----RLLR-----TRLTMVFQHFNLWSHMTVLE 112 (262)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHH-----HHHH-----HHEEEECSSCCCCTTSCHHH
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhH-----HHHh-----cceEEEecCcccCCCCcHHH
Confidence 467777777776 33 26677766641 111111 0111 24999999999999999888
Q ss_pred HHhH-H-H--------------------------H----------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---
Q psy9513 1237 RAYV-V-R--------------------------I----------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--- 1275 (1491)
Q Consensus 1237 ~~~~-~-~--------------------------l----------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--- 1275 (1491)
++.+ . . . ++||++||+||+.+|++|||||||+|||+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~ 192 (262)
T 1b0u_A 113 NVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 192 (262)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 7632 1 0 0 57999999999999999999999999999987
Q ss_pred ------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 ------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|||+||||++++..+| |++++|.+|
T Consensus 193 ~~~l~~l~~~g~tvi~vtHd~~~~~~~~----d~v~~l~~G 229 (262)
T 1b0u_A 193 LRIMQQLAEEGKTMVVVTHEMGFARHVS----SHVIFLHQG 229 (262)
T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 2345899999999999999999 999999887
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.44 E-value=1.4e-13 Score=151.49 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=94.3
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.+++..+..... ..| .++||+||++.+++++++.+++.++
T Consensus 52 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~---------~~~-----~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 117 (256)
T 1vpl_A 52 AGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH---------EVR-----KLISYLPEEAGAYRNMQGIEYLRFVAGFYA 117 (256)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH---------HHH-----TTEEEECTTCCCCTTSBHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcCCCCCceEEEECCEECCccHH---------HHh-----hcEEEEcCCCCCCCCCcHHHHHHHHHHHcC
Confidence 457777777766 332 5666665543111 001 2599999999999999998886321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 118 ~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~ 197 (256)
T 1vpl_A 118 SSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGL 197 (256)
T ss_dssp CCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCC
Confidence 01 68999999999999999999999999999988 334589
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|||+||||++++..+| |+++.|.+|
T Consensus 198 tiiivtHd~~~~~~~~----d~v~~l~~G 222 (256)
T 1vpl_A 198 TILVSSHNMLEVEFLC----DRIALIHNG 222 (256)
T ss_dssp EEEEEECCHHHHTTTC----SEEEEEETT
T ss_pred EEEEEcCCHHHHHHHC----CEEEEEECC
Confidence 9999999999999999 999999877
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.43 E-value=1.6e-13 Score=150.40 Aligned_cols=123 Identities=11% Similarity=0.166 Sum_probs=95.0
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.+++..+........ + ...+||+||++.+++++++.+|+.++
T Consensus 43 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~--------~----~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 110 (240)
T 1ji0_A 43 AGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI--------N----RMGIALVPEGRRIFPELTVYENLMMGAYNRK 110 (240)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH--------H----HTTEEEECSSCCCCTTSBHHHHHHGGGTTCC
T ss_pred CCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHH--------H----hCCEEEEecCCccCCCCcHHHHHHHhhhcCC
Confidence 457777777776 332 6667766644322111 0 12499999999999998888775221
Q ss_pred -----------------HH--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCc
Q psy9513 1242 -----------------RI--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNF 1281 (1491)
Q Consensus 1242 -----------------~l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~ 1281 (1491)
.+ ++||++||+||+.+|++|+|||||+|||+.+. ....|.
T Consensus 111 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~ 190 (240)
T 1ji0_A 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190 (240)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 12 68999999999999999999999999999988 233689
Q ss_pred eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1282 QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1282 ~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+|+||||++++..+| |+++.|.+|
T Consensus 191 tvi~vtHd~~~~~~~~----d~v~~l~~G 215 (240)
T 1ji0_A 191 TILLVEQNALGALKVA----HYGYVLETG 215 (240)
T ss_dssp CEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred EEEEEecCHHHHHHhC----CEEEEEECC
Confidence 9999999999999999 999999877
No 19
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.43 E-value=1.8e-13 Score=158.36 Aligned_cols=127 Identities=19% Similarity=0.253 Sum_probs=97.3
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH--
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~-- 1242 (1491)
+..+||-++++++ .|+ +.+|+..+....... .. . .....+||+||++.++++|++.+|+.+ ..
T Consensus 39 GsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~------~~--~-~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 109 (372)
T 1g29_1 39 GCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI------FV--P-PKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR 109 (372)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTE------EC--C-GGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCCCccEEEECCEECccccccc------cC--C-HhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc
Confidence 3467888888877 333 677776654311100 00 0 011369999999999999999998733 11
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||+|||+... . ...
T Consensus 110 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 189 (372)
T 1g29_1 110 KVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189 (372)
T ss_dssp TCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 1 68999999999999999999999999999987 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 190 g~tvi~vTHd~~~a~~~a----dri~vl~~G 216 (372)
T 1g29_1 190 GVTTIYVTHDQVEAMTMG----DRIAVMNRG 216 (372)
T ss_dssp TCEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEECCCHHHHHHhC----CEEEEEeCC
Confidence 899999999999999999 999999887
No 20
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.43 E-value=1.3e-13 Score=158.25 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=96.8
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
+..+||-++++++ .|+ +.+|+..+..... ....+||+||++.++++|++.+|+.+.
T Consensus 39 GsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (359)
T 2yyz_A 39 GCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---------------KYREVGMVFQNYALYPHMTVFENIAFPLRAR 103 (359)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---------------GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS
T ss_pred CchHHHHHHHHHCCCCCCccEEEECCEECCCCCh---------------hhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 3467888888877 333 6677766543211 013599999999999999999986321
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
++ ++||++|||||+.+|++|+|||||+|||+... . ...
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (359)
T 2yyz_A 104 RISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183 (359)
T ss_dssp CSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc
Confidence 01 68999999999999999999999999999988 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|++|
T Consensus 184 g~tvi~vTHd~~~~~~~a----dri~vl~~G 210 (359)
T 2yyz_A 184 GITSVYVTHDQAEAMTMA----SRIAVFNQG 210 (359)
T ss_dssp CCEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEEcCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.43 E-value=1.5e-13 Score=158.05 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=96.9
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-HH--
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-VR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-~~-- 1242 (1491)
+..+||-++++++ .|+ +.+|+..+..... ....+||+||++.++++|++.+|+.+ ..
T Consensus 39 GsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 103 (362)
T 2it1_A 39 GSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---------------KDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103 (362)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---------------GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHhcCCCCCceEEEECCEECCcCCH---------------hHCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 3467888888877 333 6677766543211 01359999999999999999999733 11
Q ss_pred ----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhc
Q psy9513 1243 ----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQK 1279 (1491)
Q Consensus 1243 ----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~ 1279 (1491)
+ ++||++|||||+.+|++|+|||||+|||+... . ...
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 183 (362)
T 2it1_A 104 KAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL 183 (362)
T ss_dssp TCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhC
Confidence 1 68999999999999999999999999999988 2 234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 184 g~tvi~vTHd~~~a~~~a----dri~vl~~G 210 (362)
T 2it1_A 184 GITTVYVTHDQAEALAMA----DRIAVIREG 210 (362)
T ss_dssp TCEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEECCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 22
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.42 E-value=1.2e-13 Score=153.37 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred CCcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchh-hhhhhhhHHHHhHHH--
Q psy9513 1171 EKRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEE-FIENLTAIDRAYVVR-- 1242 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~-~~~~L~~~~~~~~~~-- 1242 (1491)
+..+||-++++++ .| .+.+++..+... .... +.+| ..+||+||+|. ++..+++.+++.+..
T Consensus 44 GsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~-~~~~-----~~~~-----~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~ 112 (275)
T 3gfo_A 44 GVGKSTLFQNFNGILKPSSGRILFDNKPIDYS-RKGI-----MKLR-----ESIGIVFQDPDNQLFSASVYQDVSFGAVN 112 (275)
T ss_dssp TSSHHHHHHHHTTSSCCSEEEEEETTEECCCS-HHHH-----HHHH-----HSEEEECSSGGGTCCSSBHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHcCCCCCCeEEEECCEECCcc-cccH-----HHHh-----CcEEEEEcCcccccccCcHHHHHHHHHHH
Confidence 3467888887776 33 367777766311 1111 1111 25999999984 444788888863310
Q ss_pred -----------H-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-h
Q psy9513 1243 -----------I-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-Q 1278 (1491)
Q Consensus 1243 -----------l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~ 1278 (1491)
+ ++||++||+||+.+|++|||||||+|||+.+. .. .
T Consensus 113 ~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~ 192 (275)
T 3gfo_A 113 MKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKE 192 (275)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhh
Confidence 0 68999999999999999999999999999987 22 3
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|||+||||++++..+| |++++|.+|
T Consensus 193 ~g~tvi~vtHdl~~~~~~~----drv~~l~~G 220 (275)
T 3gfo_A 193 LGITIIIATHDIDIVPLYC----DNVFVMKEG 220 (275)
T ss_dssp HCCEEEEEESCCSSGGGGC----SEEEEEETT
T ss_pred CCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 4899999999999999999 999999887
No 23
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.42 E-value=2.1e-13 Score=156.13 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=95.7
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .|+ +.+|+..+..... . | .++||+||++.++++|++.+|+.+.
T Consensus 37 sGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---------~-~-----r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~ 101 (348)
T 3d31_A 37 AGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP---------E-K-----HDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101 (348)
T ss_dssp HHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH---------H-H-----HTCEEECTTCCCCTTSCHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHcCCCCCCcEEEECCEECCCCch---------h-h-----CcEEEEecCcccCCCCCHHHHHHHHHHHcC
Confidence 457788887776 332 6667666543211 0 1 2589999999999999999987331
Q ss_pred -----HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhcCceE
Q psy9513 1242 -----RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQKNFQL 1283 (1491)
Q Consensus 1242 -----~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~~~~~ 1283 (1491)
++ ++||++|||||+.+|++|+|||||+|||+... . ...|.|+
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ti 181 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTV 181 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 11 68999999999999999999999999999988 2 2348999
Q ss_pred EEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1284 IVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1284 i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+||||.+++..+| |++++|.+|
T Consensus 182 i~vTHd~~~~~~~a----dri~vl~~G 204 (348)
T 3d31_A 182 LHITHDQTEARIMA----DRIAVVMDG 204 (348)
T ss_dssp EEEESCHHHHHHHC----SEEEEESSS
T ss_pred EEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999 999999877
No 24
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.42 E-value=1.7e-13 Score=157.76 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=95.4
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||-++++++ .|+ +.+++..+.......+ ......+||+||++.++++|++.+|+.+.
T Consensus 42 sGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~----------~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~ 111 (353)
T 1oxx_K 42 AGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV----------PPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK 111 (353)
T ss_dssp HHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS----------CGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS
T ss_pred CcHHHHHHHHhCCCCCCceEEEECCEECcccccccC----------ChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC
Confidence 457777877776 332 5666665543110000 00123699999999999999999986321
Q ss_pred --------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhcC
Q psy9513 1242 --------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQKN 1280 (1491)
Q Consensus 1242 --------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~~ 1280 (1491)
++ ++||++|||||+.+|++|+|||||+|||+... . ...|
T Consensus 112 ~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g 191 (353)
T 1oxx_K 112 MSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG 191 (353)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 01 68999999999999999999999999999987 2 2348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|+|+||||.+++..+| |++++|++|
T Consensus 192 ~tvi~vTHd~~~~~~~a----dri~vl~~G 217 (353)
T 1oxx_K 192 VTLLVVSHDPADIFAIA----DRVGVLVKG 217 (353)
T ss_dssp CEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999887
No 25
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.42 E-value=9e-14 Score=151.63 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=93.5
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +|+ +.+++..+.+... ...++||+||++.+++++++.+++.++
T Consensus 35 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---------------~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~ 99 (240)
T 2onk_A 35 AGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---------------ERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE 99 (240)
T ss_dssp SSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT---------------TTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC
T ss_pred CCHHHHHHHHhCCCCCCceEEEECCEECCcCch---------------hhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC
Confidence 457777777766 332 5666655533111 013689999999999999988886220
Q ss_pred ------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hcCce
Q psy9513 1242 ------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QKNFQ 1282 (1491)
Q Consensus 1242 ------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~~~~ 1282 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+. .. ..|.|
T Consensus 100 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~t 179 (240)
T 2onk_A 100 RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP 179 (240)
T ss_dssp HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE
Confidence 01 68999999999999999999999999999987 22 24899
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||+||||++++..+| |+++.|.+|
T Consensus 180 vi~vtHd~~~~~~~~----d~i~~l~~G 203 (240)
T 2onk_A 180 ILHVTHDLIEAAMLA----DEVAVMLNG 203 (240)
T ss_dssp EEEEESCHHHHHHHC----SEEEEEETT
T ss_pred EEEEeCCHHHHHHhC----CEEEEEECC
Confidence 999999999999999 999999887
No 26
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.41 E-value=1.8e-13 Score=157.90 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=90.6
Q ss_pred CCcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH----
Q psy9513 1171 EKRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV---- 1241 (1491)
Q Consensus 1171 ~~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~---- 1241 (1491)
+..+||-++++++ .|+ +.+|+..+..... ....+||+||++.++++|++.+|+.|.
T Consensus 47 GsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---------------~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 47 GCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---------------KDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp TSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---------------GGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred CChHHHHHHHHHcCCCCCceEEEECCEECCCCCh---------------hhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 3467888888877 333 6677665543211 013599999999999999999987321
Q ss_pred ---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hh-hc
Q psy9513 1242 ---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SD-QK 1279 (1491)
Q Consensus 1242 ---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~-~~ 1279 (1491)
++ ++||++|||||+.+|++|+|||||+|||+... .. ..
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~ 191 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 11 68999999999999999999999999999988 22 34
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|+|+||||.+++..+| |++++|.+|
T Consensus 192 g~tvi~vTHd~~~a~~~a----dri~vl~~G 218 (372)
T 1v43_A 192 KVTTIYVTHDQVEAMTMG----DRIAVMNRG 218 (372)
T ss_dssp TCEEEEEESCHHHHHHHC----SEEEEEETT
T ss_pred CCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999887
No 27
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.39 E-value=3.9e-13 Score=148.08 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=77.6
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-----------------HH-----------------------hhhHHHHHHHhhc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-----------------RI-----------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-----------------~l-----------------------~~~~~~~a~~~~~ 1256 (1491)
..+||+||++.+++.+++.+++.+. ++ ++||++||+||+.
T Consensus 66 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 145 (253)
T 2nq2_C 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIAS 145 (253)
T ss_dssp SCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred ccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 3699999999998888887775210 01 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH---------Hhhc-CceEEEEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA---------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~---------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
+|++|+|||||+|||+.+. .... |.|||+||||++++..+| |+++.|.+|.
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~----d~v~~l~~G~ 206 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIA----NKTLLLNKQN 206 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHC----SEEEEEETTE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC----CEEEEEeCCe
Confidence 9999999999999999998 2334 899999999999999999 9999998773
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.39 E-value=2.3e-13 Score=150.78 Aligned_cols=123 Identities=11% Similarity=0.188 Sum_probs=94.2
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-----H
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV-----V 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~-----~ 1241 (1491)
..+||=++++++ +| .+.+++..+........ ++ ..+||+||++.+++.+++.+++.+ +
T Consensus 44 sGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~----~~--------~~i~~v~q~~~l~~~~tv~enl~~~~~~~~ 111 (257)
T 1g6h_A 44 SGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL----YH--------YGIVRTFQTPQPLKEMTVLENLLIGEICPG 111 (257)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHH----HH--------HTEEECCCCCGGGGGSBHHHHHHGGGTSTT
T ss_pred CCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH----Hh--------CCEEEEccCCccCCCCcHHHHHHHHHhhhc
Confidence 467788877776 33 26667666543321110 01 249999999999999888877521 0
Q ss_pred ---------------------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--
Q psy9513 1242 ---------------------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-- 1275 (1491)
Q Consensus 1242 ---------------------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-- 1275 (1491)
++ ++||++||+||+.+|++|+|||||+|||+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~ 191 (257)
T 1g6h_A 112 ESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191 (257)
T ss_dssp SCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHH
T ss_pred cCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 00 68999999999999999999999999999988
Q ss_pred -------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 -------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 -------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|||+||||++++..+| |++++|.+|
T Consensus 192 l~~~l~~l~~~g~tvi~vtHd~~~~~~~~----d~v~~l~~G 229 (257)
T 1g6h_A 192 IFNHVLELKAKGITFLIIEHRLDIVLNYI----DHLYVMFNG 229 (257)
T ss_dssp HHHHHHHHHHTTCEEEEECSCCSTTGGGC----SEEEEEETT
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 2345899999999999999999 999999877
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.38 E-value=3.9e-13 Score=147.26 Aligned_cols=122 Identities=11% Similarity=0.062 Sum_probs=93.1
Q ss_pred CcccceeEEEEe--cc--ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1172 KRRTYNYRVVQK--KN--GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
..+||=++++++ +| .+.+++..+.......+ | .++||+||++.+++++++.+++.++
T Consensus 37 sGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~--------~-----~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~ 103 (249)
T 2qi9_C 37 AGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL--------A-----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTR 103 (249)
T ss_dssp SSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHH--------H-----HHEEEECSCCCCCTTCBHHHHHHTTCSSTTC
T ss_pred CcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHH--------h-----ceEEEECCCCccCCCCcHHHHHHHhhccCCc
Confidence 356777766665 22 25556655543222111 1 2499999999999999988886321
Q ss_pred --HH-----------------------hhhHHHHHHHhhcCCC-------eeEEcCCCCCCChHhH---------HhhcC
Q psy9513 1242 --RI-----------------------VRDHKALAETFSRNCG-------IFALDEPTTNLDIKNA---------SDQKN 1280 (1491)
Q Consensus 1242 --~l-----------------------~~~~~~~a~~~~~~~~-------~l~lDEp~~~lD~~~~---------~~~~~ 1280 (1491)
.+ ++||++||+||+.+|+ +|+|||||+|||+.+. ....|
T Consensus 104 ~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g 183 (249)
T 2qi9_C 104 TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQG 183 (249)
T ss_dssp HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCC
Confidence 11 6899999999999999 9999999999999988 23348
Q ss_pred ceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1281 FQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1281 ~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|||+||||++++..+| |+++.|.+|
T Consensus 184 ~tviivtHd~~~~~~~~----d~v~~l~~G 209 (249)
T 2qi9_C 184 LAIVMSSHDLNHTLRHA----HRAWLLKGG 209 (249)
T ss_dssp CEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred CEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 99999999999999999 999999877
No 30
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.36 E-value=7.8e-13 Score=148.72 Aligned_cols=87 Identities=26% Similarity=0.326 Sum_probs=73.7
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH--------------------------------------H---hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR--------------------------------------I---VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~--------------------------------------l---~~~~~~~a~~~~~ 1256 (1491)
++|||||++.+|.+ ++.+|+.+.. + +|||++|||||+.
T Consensus 129 ~i~~v~Q~~~lf~~-Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~ 207 (306)
T 3nh6_A 129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207 (306)
T ss_dssp TEEEECSSCCCCSE-EHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCccCcc-cHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHh
Confidence 59999999988854 8887763210 0 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|||||||++||+.+. ....+.|+|+||||+..+.. | |++++|++|
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-a----D~i~vl~~G 264 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-A----DQILVIKDG 264 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-C----SEEEEEETT
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-C----CEEEEEECC
Confidence 9999999999999999887 22347899999999999876 8 999999887
No 31
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.34 E-value=7.6e-13 Score=159.75 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=80.8
Q ss_pred CCcccceeeecccccCCCCcceEEeec-cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQR-PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~-~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
||.+.+|.+.||++|++ ...++|.. ++++|+||||||||||++||.|++.+.. ...|+. .+ ...+
T Consensus 1 mm~i~~l~~~~~~~~~~--~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~--~~~R~~------~~----~~lI 66 (430)
T 1w1w_A 1 MGRLVGLELSNFKSYRG--VTKVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS--NHLRSN------IL----KDLI 66 (430)
T ss_dssp -CCEEEEEEESCSSCCS--EEEEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC-----------------C----GGGS
T ss_pred CCeeEEEEEeCEEEECC--ceeEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc--ccchhh------hH----HHHH
Confidence 89999999999999973 24578875 4999999999999999999988884321 111221 11 0000
Q ss_pred hcC-------ccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeecc
Q psy9513 80 SSG-------KNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGC 152 (1491)
Q Consensus 80 ~~~-------~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 152 (1491)
+.| ..+.... ........+.|...|. .++..+.|.|.+... |.. .+.+ +|...+ .
T Consensus 67 ~~g~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~-~~~~~~~i~r~~~~~---~~~--------~~~i---ng~~~~--~ 128 (430)
T 1w1w_A 67 YRGVLNDENSDDYDNEG-AASSNPQSAYVKAFYQ-KGNKLVELMRIISRN---GDT--------SYKI---DGKTVS--Y 128 (430)
T ss_dssp CCC--------------------CCEEEEEEEEE-ETTEEEEEEEEEETT---SCE--------EEEE---TTEEEC--H
T ss_pred hcCCccceeeEEecccc-cccCCcccccceeeec-cCCcEEEEEEEEecC---Cce--------EEEE---CCEEcc--H
Confidence 000 0000000 0000000122222332 223345666655321 211 1222 364432 1
Q ss_pred ccchhhHHhHhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHhhhhhhHHHHHHHHHHhHHHHhh
Q psy9513 153 LQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRK 222 (1491)
Q Consensus 153 ~q~~~~~~i~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i~g~~~~~~~~~~lk~~~d~~~k 222 (1491)
. ++...+. ..|+....+. ++++||+....+ +.|.+|+.+|++++|+..|...+..++...+++.+
T Consensus 129 ~--~~~~~~~-~~~i~~~~~~--~~i~qg~~~~l~~~~p~eRr~~ld~~~g~~~~~~~~~~~~~~~~~~~~ 194 (430)
T 1w1w_A 129 K--DYSIFLE-NENILIKAKN--FLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSK 194 (430)
T ss_dssp H--HHHHHHH-HTTCCTTTCT--TEECTTCTTHHHHSCHHHHHHTC-------------------------
T ss_pred H--HHHHHHH-hCCcCCCCcc--eeeehHhHHHHHhCCHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 2 4433332 2233322222 356899988766 47999999999999999998777776664333433
No 32
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.31 E-value=1.3e-12 Score=143.01 Aligned_cols=99 Identities=20% Similarity=0.246 Sum_probs=80.9
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~ 75 (1491)
||.-..|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+....
T Consensus 1 ~~~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~ 74 (240)
T 1ji0_A 1 MVSDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAI----AGLVRAQK--GKIIFNGQDITNKP 74 (240)
T ss_dssp CCCSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECTTCC
T ss_pred CCCCceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--ceEEECCEECCCCC
Confidence 666446999999 69986555 88898875 9999999999999999999 99999998 99999997764322
Q ss_pred H-HHhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 76 E-ASASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 76 ~-~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
. ...+.+++|+ |++.+++..++..++.+..
T Consensus 75 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred HHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Confidence 2 2334569999 9988888889999998753
No 33
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.28 E-value=1.8e-12 Score=140.41 Aligned_cols=97 Identities=18% Similarity=0.192 Sum_probs=77.9
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD 75 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~ 75 (1491)
|+.+ |+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+....
T Consensus 1 m~~~--l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~ 72 (224)
T 2pcj_A 1 MAEI--LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL----GLLDAPTE--GKVFLEGKEVDYTN 72 (224)
T ss_dssp -CEE--EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHH----TTSSCCSE--EEEEETTEECCSSC
T ss_pred CCcE--EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEECCCCC
Confidence 5543 899999 69986555 88998875 9999999999999999999 99999998 99999987764322
Q ss_pred HH---Hh-hcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 76 EA---SA-SSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 76 ~~---~~-~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.. .. +..++|+ |++.+++..++..++.+..
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 107 (224)
T 2pcj_A 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM 107 (224)
T ss_dssp HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence 21 12 2568999 9988888889999998754
No 34
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.28 E-value=1.7e-12 Score=148.30 Aligned_cols=95 Identities=16% Similarity=0.271 Sum_probs=80.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC--CcHHH
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK--KDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~--~~~~~ 78 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.. .....
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i----aGl~~p~~--G~I~i~G~~i~~~~~~~~~ 77 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCL----AGFEQPDS--GEISLSGKTIFSKNTNLPV 77 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHH----HTSSCCSE--EEEEETTEEEESSSCBCCG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHH----hcCCCCCC--cEEEECCEECcccccccch
Confidence 4899999 69987666 89999986 9999999999999999999 99999998 999999876622 11123
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.+++++|+ |++.+++..++..+|.+.+.
T Consensus 78 ~~r~ig~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp GGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred hhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 45679999 99999999999999998764
No 35
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.28 E-value=3.1e-12 Score=142.33 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=56.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHH-hccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENL-TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~-~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+ | |++++|.+|
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~----d~v~~l~~G 241 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP----DYVHVLYQG 241 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCC----SEEEEEETT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcC----CEEEEEECC
Confidence 67999999999999999999999999999988 223488999999999998876 8 999999877
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.27 E-value=3.6e-12 Score=141.89 Aligned_cols=119 Identities=17% Similarity=0.154 Sum_probs=89.2
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccch-hhhhhhhhHHHHhH-----
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDE-EFIENLTAIDRAYV----- 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~-~~~~~L~~~~~~~~----- 1240 (1491)
..+||=++++++ +|+ +.+++..+... .. | ..+||+||++ .++..+++.+++.+
T Consensus 44 sGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~----------~~-~-----~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 44 SGKSTLLQIVAGLIEPTSGDVLYDGERKKGY----------EI-R-----RNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEECCHH----------HH-G-----GGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred CcHHHHHHHHhCCCCCCCcEEEECCEECchH----------Hh-h-----hhEEEEeccchhhcCCCcHHHHHHHHHHhc
Confidence 467777777776 332 56666555321 11 1 2599999996 45556666665421
Q ss_pred -------------------H--HH-----------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------Hhhc
Q psy9513 1241 -------------------V--RI-----------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQK 1279 (1491)
Q Consensus 1241 -------------------~--~l-----------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~ 1279 (1491)
. .. ++||++||+||+.+|++|+|||||+|||+.+. ....
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~ 187 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL 187 (266)
T ss_dssp CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc
Confidence 0 11 67999999999999999999999999999988 2334
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|.|||+||||++++..+| |+++.|.+|
T Consensus 188 g~tii~vtHd~~~~~~~~----d~v~~l~~G 214 (266)
T 2yz2_A 188 GKTVILISHDIETVINHV----DRVVVLEKG 214 (266)
T ss_dssp TCEEEEECSCCTTTGGGC----SEEEEEETT
T ss_pred CCEEEEEeCCHHHHHHhC----CEEEEEECC
Confidence 899999999999999999 999999877
No 37
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.27 E-value=3.7e-12 Score=141.82 Aligned_cols=120 Identities=16% Similarity=0.156 Sum_probs=88.1
Q ss_pred CcccceeEEEEe--ccc---cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH------
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV------ 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~------ 1240 (1491)
..+||=++++++ +|+ +.+|+..+.......+ + .+++|+||++.+++ +++.+|+.+
T Consensus 56 sGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~-----~--------~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~ 121 (271)
T 2ixe_A 56 SGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYL-----H--------TQVAAVGQEPLLFG-RSFRENIAYGLTRTP 121 (271)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH-----H--------HHEEEECSSCCCCS-SBHHHHHHTTCSSCC
T ss_pred CCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHH-----h--------ccEEEEecCCcccc-ccHHHHHhhhcccCC
Confidence 457777777766 332 6666665543322111 1 24999999998776 376665411
Q ss_pred --H--------------------HH--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------
Q psy9513 1241 --V--------------------RI--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------- 1275 (1491)
Q Consensus 1241 --~--------------------~l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------- 1275 (1491)
. .+ ++||++|||||+.+|++|||||||+|||+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 201 (271)
T 2ixe_A 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE 201 (271)
T ss_dssp CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence 0 01 68999999999999999999999999999998
Q ss_pred Hh-hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 ~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.. ..|.|||+||||++++.. | |++++|.+|
T Consensus 202 ~~~~~g~tviivtHd~~~~~~-~----d~v~~l~~G 232 (271)
T 2ixe_A 202 SPEWASRTVLLITQQLSLAER-A----HHILFLKEG 232 (271)
T ss_dssp CTTTTTSEEEEECSCHHHHTT-C----SEEEEEETT
T ss_pred HHhhcCCEEEEEeCCHHHHHh-C----CEEEEEECC
Confidence 11 238899999999998864 8 999999877
No 38
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.27 E-value=2.8e-12 Score=141.63 Aligned_cols=93 Identities=11% Similarity=0.224 Sum_probs=76.4
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC--CCcHHH
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG--KKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~--~~~~~~ 78 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+. ......
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l----~Gl~~p~~--G~I~~~g~~i~~~~~~~~~ 97 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCL----NLLEDFDE--GEIIIDGINLKAKDTNLNK 97 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTEESSSTTCCHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHH----HcCCCCCC--cEEEECCEECCCccccHHH
Confidence 3899999 69986556 88999876 9999999999999999999 99999998 99999987663 112223
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.+..++|+ |++.+++..++..++.+.
T Consensus 98 ~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 98 VREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred HhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 34568999 998888888999999874
No 39
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.26 E-value=4.4e-12 Score=140.63 Aligned_cols=95 Identities=12% Similarity=0.208 Sum_probs=79.5
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+........+
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l----~Gl~~p~~--G~I~~~g~~~~~~~~~~~~ 84 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLL----TGYLSPSH--GECHLLGQNLNSWQPKALA 84 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHH----TSSSCCSS--CEEEETTEETTTSCHHHHH
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCC--cEEEECCEECCcCCHHHHh
Confidence 4899999 69987666 88999875 9999999999999999999 99999998 9999999877543344444
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
..++|+ |.+.+.+..++..++.+...
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~ 111 (266)
T 4g1u_C 85 RTRAVMRQYSELAFPFSVSEVIQMGRA 111 (266)
T ss_dssp HHEEEECSCCCCCSCCBHHHHHHGGGT
T ss_pred heEEEEecCCccCCCCCHHHHHHhhhh
Confidence 567889 88888788899999887654
No 40
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.26 E-value=3.2e-12 Score=140.35 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=89.1
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ .| .+.+|+..+.......+ | .++||+||++.+++ +++.+|+.+.
T Consensus 46 sGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~--------~-----~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~ 111 (247)
T 2ff7_A 46 SGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWL--------R-----RQVGVVLQDNVLLN-RSIIDNISLANPGMS 111 (247)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHH--------H-----HHEEEECSSCCCTT-SBHHHHHTTTCTTCC
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH--------H-----hcEEEEeCCCcccc-ccHHHHHhccCCCCC
Confidence 457777777766 33 26667666544322111 1 24999999998876 4777765210
Q ss_pred ---------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hh
Q psy9513 1242 ---------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SD 1277 (1491)
Q Consensus 1242 ---------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~ 1277 (1491)
.+ ++||++|||||+.+|++|+|||||+|||+.+. ..
T Consensus 112 ~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~ 191 (247)
T 2ff7_A 112 VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191 (247)
T ss_dssp HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11 68999999999999999999999999999988 11
Q ss_pred hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1278 QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
..|.|+|+||||++++.. | |++++|.+|
T Consensus 192 ~~g~tviivtH~~~~~~~-~----d~v~~l~~G 219 (247)
T 2ff7_A 192 CKGRTVIIIAHRLSTVKN-A----DRIIVMEKG 219 (247)
T ss_dssp HTTSEEEEECSSGGGGTT-S----SEEEEEETT
T ss_pred cCCCEEEEEeCCHHHHHh-C----CEEEEEECC
Confidence 358999999999998764 8 999999877
No 41
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.26 E-value=2e-12 Score=142.55 Aligned_cols=63 Identities=21% Similarity=0.286 Sum_probs=57.0
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHH-hccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENL-TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~-~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. ....|.|||+||||++++..+ | |++++|.+|
T Consensus 148 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~----d~v~~l~~G 220 (250)
T 2d2e_A 148 EKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQP----DKVHVMMDG 220 (250)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCC----SEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcC----CEEEEEECC
Confidence 68999999999999999999999999999987 223589999999999998887 7 999999877
No 42
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.26 E-value=1.2e-10 Score=143.59 Aligned_cols=150 Identities=15% Similarity=0.199 Sum_probs=88.2
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.+..|+|+||++|. ...|+|..++++|+|||||||||||+||.|+++|.. . +.+..+|.
T Consensus 38 M~l~~L~i~nf~~~~---~~~l~f~~g~n~i~G~NGaGKS~lleAl~~llg~r~---~--~~~i~~g~------------ 97 (517)
T 4ad8_A 38 PRLSRLEIRNLATIT---QLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRA---N--HDLIRSGE------------ 97 (517)
T ss_dssp CCCCEEEEESBTTBS---CEEEECCCSEEEEEESHHHHHHHHTHHHHHHTCSCC---C--GGGBCTTC------------
T ss_pred ceeeeeeccccccee---eEEEecCCCeEEEEcCCCCCHHHHHHHHHHHhcCCc---H--HHHhcCCC------------
Confidence 346789999999885 357888888999999999999999999999997631 1 22111111
Q ss_pred CccccccCCCCCCccHHHHHHhhc-cccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHH
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQC-TCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLE 160 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~-~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~ 160 (1491)
..+.|...| ...++..+.+.|.+... |+.. ++ .+|...+.. ++.
T Consensus 98 ---------------~~a~v~~~f~~~~~~~~~~i~r~~~~~---g~~~--------~~---ing~~v~~~----~l~-- 142 (517)
T 4ad8_A 98 ---------------KELLVTGFWGDGDESEADSASRRLSSA---GRGA--------AR---LSGEVVSVR----ELQ-- 142 (517)
T ss_dssp ---------------SEEEEEEEC--------CEEEEEEETT---SCCE--------EE---SSSSBCCHH----HHH--
T ss_pred ---------------CcEEEEEEEEecCCCCeEEEEEEEecC---CCcE--------EE---ECCEECCHH----HHH--
Confidence 113444556 43335678888887632 2211 12 346543210 111
Q ss_pred hHhhhCCcHhhhhcceeeccCCCCCCCCcchhhHHHHHHhhhh--hhHHHHHHHHHH
Q psy9513 161 MCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDA--TKYNKALESIKI 215 (1491)
Q Consensus 161 i~~~~g~~~~~~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~--~~~~~~~~~lk~ 215 (1491)
.+.+ ..+.+.+|.+...++ .|..++.++|...+. ..|...+..++.
T Consensus 143 --~~~~------~li~i~~q~~~~~l~-~~~~rr~~LD~~~~~~~~~~~~~~~~~~~ 190 (517)
T 4ad8_A 143 --EWAQ------GRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWRE 190 (517)
T ss_dssp --HHHT------TTEEEESGGGGGTTT-SHHHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred --HHhh------hheEEeCCchHHhcC-CHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 1111 113455777666655 899999999987775 344444444444
No 43
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.25 E-value=3.6e-12 Score=146.59 Aligned_cols=93 Identities=15% Similarity=0.302 Sum_probs=80.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+..... ..
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i----aGl~~p~~--G~I~i~G~~~~~~~~--~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMI----AGLETITS--GDLFIGEKRMNDTPP--AE 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTCCG--GG
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHH----HcCCCCCC--eEEEECCEECCCCCH--HH
Confidence 4899999 69987666 89999986 9999999999999999999 99999998 999999987743221 23
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
++++|+ |++.+++..++..+|.+.+.
T Consensus 75 r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 75 RGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp SCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred CCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 679999 99999999999999988764
No 44
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.25 E-value=2.9e-12 Score=142.07 Aligned_cols=98 Identities=19% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCcccceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC--
Q psy9513 1 MALLDQLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK-- 73 (1491)
Q Consensus 1 m~~~~~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~-- 73 (1491)
||.-..|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+..
T Consensus 1 ~m~~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l----~Gl~~p~~--G~i~~~g~~~~~~~ 74 (262)
T 1b0u_A 1 MMSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCI----NFLEKPSE--GAIIVNGQNINLVR 74 (262)
T ss_dssp ----CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECCEEE
T ss_pred CCCCceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCEEccccc
Confidence 554335999999 69986556 88999876 9999999999999999999 99999998 999999876631
Q ss_pred --------CcH---HHhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 74 --------KDE---ASASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 74 --------~~~---~~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
... ...+..++|+ |++.+++..++..++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 117 (262)
T 1b0u_A 75 DKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117 (262)
T ss_dssp CTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred cccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence 111 2234568999 998888888999999874
No 45
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.25 E-value=6.7e-12 Score=136.34 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=71.1
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-------------------------------------HH---hhhHHHHHHHhhcC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-------------------------------------RI---VRDHKALAETFSRN 1257 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-------------------------------------~l---~~~~~~~a~~~~~~ 1257 (1491)
.++|+||++.+++. ++.+|+.+. .+ ++||++|||||+.+
T Consensus 70 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~ 148 (229)
T 2pze_A 70 RISFCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 148 (229)
T ss_dssp CEEEECSSCCCCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred EEEEEecCCcccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcC
Confidence 58999999988764 766664210 11 68999999999999
Q ss_pred CCeeEEcCCCCCCChHhH-----H----hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1258 CGIFALDEPTTNLDIKNA-----S----DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1258 ~~~l~lDEp~~~lD~~~~-----~----~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|++|+|||||+|||+.+. . ...|.|+|+||||++++. .| |+++.|.+|
T Consensus 149 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~----d~v~~l~~G 205 (229)
T 2pze_A 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KA----DKILILHEG 205 (229)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HC----SEEEEEETT
T ss_pred CCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hC----CEEEEEECC
Confidence 999999999999999987 1 123789999999999886 48 999999877
No 46
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.24 E-value=1.3e-12 Score=139.39 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=72.9
Q ss_pred eEEEEccchhhhhhhhhHHHHhHH-----------HH----------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVV-----------RI----------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~-----------~l----------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
.++|+||++.+++++++.+++.++ .+ ++||++||+||+.+|++|+||
T Consensus 79 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 79 KIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp GEEEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 599999999999999988876221 01 689999999999999999999
Q ss_pred CCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1265 EPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
|||+|||+.+. ....|.|||++|||++++..+| |+++++
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~----d~v~~~ 206 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVN----ENLHKY 206 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEE----EEGGGG
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEe
Confidence 99999999987 2334789999999999998888 777755
No 47
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.24 E-value=3.2e-12 Score=142.63 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=89.5
Q ss_pred CcccceeEEEEe--ccc---ccccccccc--chhhHHHHHHHHHHhhhhcccceEEEEccchhhh--hhhhhHHHHhH--
Q psy9513 1172 KRRTYNYRVVQK--KNG---IEQDMRNRC--SAGQRVLACLIIRLFISDQKNFQLIVITHDEEFI--ENLTAIDRAYV-- 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~~---~~~~~~~~~--~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~--~~L~~~~~~~~-- 1240 (1491)
..+||=++++++ +|+ +.+++..+. ......+ ..++||+||++.++ ..+++.+++.+
T Consensus 58 sGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~-------------~~~i~~v~Q~~~~~~~~~ltv~enl~~~~ 124 (279)
T 2ihy_A 58 AGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV-------------RQHIGFVSHSLLEKFQEGERVIDVVISGA 124 (279)
T ss_dssp SSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH-------------HTTEEEECHHHHTTSCTTSBHHHHHHTTC
T ss_pred CcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH-------------cCcEEEEEcCcccccCCCCCHHHHHHhhh
Confidence 457777777776 332 566666553 2211111 12599999998643 34577776521
Q ss_pred ------H---------HH-----------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-------
Q psy9513 1241 ------V---------RI-----------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------- 1275 (1491)
Q Consensus 1241 ------~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------- 1275 (1491)
+ ++ ++||++||+||+.+|++|||||||+|||+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l 204 (279)
T 2ihy_A 125 FKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSIL 204 (279)
T ss_dssp ---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred hhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 0 00 68999999999999999999999999999988
Q ss_pred --HhhcCceE--EEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1276 --SDQKNFQL--IVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1276 --~~~~~~~~--i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
....|.|| |+||||++++..+| |++++|.+|
T Consensus 205 ~~l~~~g~tv~~iivtHd~~~~~~~~----d~v~~l~~G 239 (279)
T 2ihy_A 205 DSLSDSYPTLAMIYVTHFIEEITANF----SKILLLKDG 239 (279)
T ss_dssp HHHHHHCTTCEEEEEESCGGGCCTTC----CEEEEEETT
T ss_pred HHHHHCCCEEEEEEEecCHHHHHHhC----CEEEEEECC
Confidence 22348899 99999999998899 999999877
No 48
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.24 E-value=2.9e-12 Score=140.77 Aligned_cols=120 Identities=22% Similarity=0.227 Sum_probs=87.6
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV----- 1241 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~----- 1241 (1491)
..+||=++++++ +| .+.+|+..+..... .....+++|+||++.+++. ++.+|+.++
T Consensus 39 sGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-------------~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~ 104 (243)
T 1mv5_A 39 GGKSTIFSLLERFYQPTAGEITIDGQPIDNISL-------------ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY 104 (243)
T ss_dssp SSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC-------------SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS
T ss_pred CCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH-------------HHHHhhEEEEcCCCccccc-cHHHHHhhhccCCC
Confidence 457777777766 32 25666655433211 0112358999999988763 766664210
Q ss_pred ----------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------H
Q psy9513 1242 ----------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------S 1276 (1491)
Q Consensus 1242 ----------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~ 1276 (1491)
.+ ++||++|||||+.+|++|+|||||+|||+.+. .
T Consensus 105 ~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~ 184 (243)
T 1mv5_A 105 TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184 (243)
T ss_dssp CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 11 68999999999999999999999999999887 1
Q ss_pred hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
...|.|+|+||||++++. .| |++++|.+|
T Consensus 185 ~~~~~tvi~vtH~~~~~~-~~----d~v~~l~~G 213 (243)
T 1mv5_A 185 LMKGRTTLVIAHRLSTIV-DA----DKIYFIEKG 213 (243)
T ss_dssp HHTTSEEEEECCSHHHHH-HC----SEEEEEETT
T ss_pred hcCCCEEEEEeCChHHHH-hC----CEEEEEECC
Confidence 125899999999999886 58 999999877
No 49
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.24 E-value=6.1e-12 Score=138.44 Aligned_cols=92 Identities=12% Similarity=0.218 Sum_probs=77.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+.. .....+
T Consensus 15 ~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l----~Gl~~p~~--G~I~~~g~~~~~-~~~~~~ 87 (256)
T 1vpl_A 15 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRII----STLIKPSS--GIVTVFGKNVVE-EPHEVR 87 (256)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTEETTT-CHHHHH
T ss_pred eEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHH----hcCCCCCc--eEEEECCEECCc-cHHHHh
Confidence 5889999 69986556 88999875 9999999999999999999 99999998 999999876643 223345
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..++|+ |++.+++..++..++.+.
T Consensus 88 ~~i~~v~q~~~l~~~ltv~enl~~~ 112 (256)
T 1vpl_A 88 KLISYLPEEAGAYRNMQGIEYLRFV 112 (256)
T ss_dssp TTEEEECTTCCCCTTSBHHHHHHHH
T ss_pred hcEEEEcCCCCCCCCCcHHHHHHHH
Confidence 679999 998888888999998874
No 50
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.23 E-value=5.1e-12 Score=139.94 Aligned_cols=62 Identities=27% Similarity=0.358 Sum_probs=55.1
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++|||||+.+|++|+|||||+|||+.+. ....+.|+|+||||++++. .| |++++|.+|
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~----d~i~~l~~G 229 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SA----ESIILLNKG 229 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TC----SEEEEEETT
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hC----CEEEEEECC
Confidence 68999999999999999999999999999988 1234789999999999875 47 999999877
No 51
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.22 E-value=6.6e-12 Score=136.88 Aligned_cols=94 Identities=15% Similarity=0.240 Sum_probs=75.9
Q ss_pred eeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 7 LHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
|+++|+ ++|++. .+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+......
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l----~Gl~~p~~--G~I~~~g~~~~~~~~~ 75 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII----GCLDKPTE--GEVYIDNIKTNDLDDD 75 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECTTCCHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCc--eEEEECCEEcccCCHH
Confidence 678898 588632 24 88888886 9999999999999999999 99999998 9999999776442222
Q ss_pred ----HhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 78 ----SASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 78 ----~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
..+..++|+ |++.+++..++..+|.+.+.
T Consensus 76 ~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~ 109 (235)
T 3tif_A 76 ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLI 109 (235)
T ss_dssp HHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHhhccEEEEecCCccCCCCcHHHHHHHHHH
Confidence 123469999 99988888899999988653
No 52
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.21 E-value=7.5e-12 Score=142.86 Aligned_cols=95 Identities=18% Similarity=0.306 Sum_probs=79.5
Q ss_pred ceeeecc-cccCCC----Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH
Q psy9513 6 QLHIMGI-RNFPAD----KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE 76 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~----~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~ 76 (1491)
.|+++|+ ++|++. .+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+.....
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i----~GL~~p~~--G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV----NLLERPTE--GSVLVDGQELTTLSE 97 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECSSCCH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHH----hcCCCCCc--eEEEECCEECCcCCH
Confidence 4899999 689642 24 78999986 9999999999999999999 99999998 999999988754322
Q ss_pred ---HHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 77 ---ASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 77 ---~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...+.+++|+ |++.+++..++..+|.+.+.
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 2345789999 99999999999999988654
No 53
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.21 E-value=4.9e-12 Score=140.15 Aligned_cols=94 Identities=24% Similarity=0.278 Sum_probs=77.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-HHHh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-EASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-~~~~ 79 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+.... ....
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~~ 80 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVI----TGFLKADE--GRVYFENKDITNKEPAELY 80 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECTTCCHHHHH
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEECCEECCCCCHHHHH
Confidence 3899999 69986656 88888875 9999999999999999999 99999998 99999997764322 2234
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+.+++|+ |++.+++..++..+|.+..
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 81 HYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp HHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred hCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 5679999 9888877889999998754
No 54
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.21 E-value=8.3e-12 Score=133.13 Aligned_cols=88 Identities=17% Similarity=0.215 Sum_probs=74.8
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++ .+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+. ..+
T Consensus 10 ~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l----~Gl~~p~~--G~I~~~g~~~~-----~~~ 77 (214)
T 1sgw_A 10 KLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTI----STYLKPLK--GEIIYNGVPIT-----KVK 77 (214)
T ss_dssp EEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTEEGG-----GGG
T ss_pred eEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--eEEEECCEEhh-----hhc
Confidence 4889999 68987 66 88888875 9999999999999999999 99999998 99999887652 235
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..++|+ |++.+++..++..++.+..
T Consensus 78 ~~i~~v~q~~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 78 GKIFFLPEEIIVPRKISVEDYLKAVA 103 (214)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred CcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 678999 9988877789999988754
No 55
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.21 E-value=1.2e-11 Score=136.60 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=71.9
Q ss_pred eEE-EEccchhhhhhhhhHHHHhHH-H-----------------------------H---hhhHHHHHHHhhcCCCeeEE
Q psy9513 1218 QLI-VITHDEEFIENLTAIDRAYVV-R-----------------------------I---VRDHKALAETFSRNCGIFAL 1263 (1491)
Q Consensus 1218 ~l~-~i~~~~~~~~~L~~~~~~~~~-~-----------------------------l---~~~~~~~a~~~~~~~~~l~l 1263 (1491)
.++ |+||++.+ .+++.+++.++ . + ++||++||+||+.+|++|+|
T Consensus 75 ~i~~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 152 (263)
T 2pjz_A 75 RYSTNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGL 152 (263)
T ss_dssp TEEECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred heEEEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 589 99999887 77777775221 0 0 68999999999999999999
Q ss_pred cCCCCCCChHhH------Hhh-cCceEEEEccCHHHHHHHhccccc-eEEEEecC
Q psy9513 1264 DEPTTNLDIKNA------SDQ-KNFQLIVITHDEEFIENLTAIDRA-YVVRIVRD 1310 (1491)
Q Consensus 1264 DEp~~~lD~~~~------~~~-~~~~~i~~thd~~~~~~~~~~~~~-~~~~l~~~ 1310 (1491)
||||+|||+.+. ... .. |+|+||||++++..+| | +++.|.+|
T Consensus 153 DEPts~LD~~~~~~l~~~L~~~~~-tviivtHd~~~~~~~~----d~~i~~l~~G 202 (263)
T 2pjz_A 153 DEPFENVDAARRHVISRYIKEYGK-EGILVTHELDMLNLYK----EYKAYFLVGN 202 (263)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHSCS-EEEEEESCGGGGGGCT----TSEEEEEETT
T ss_pred ECCccccCHHHHHHHHHHHHHhcC-cEEEEEcCHHHHHHhc----CceEEEEECC
Confidence 999999999988 222 23 9999999999999899 9 99999877
No 56
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.20 E-value=1.1e-11 Score=142.29 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=78.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+..... ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~i~~~~~--~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLML----AGIYKPTS--GEIYFDDVLVNDIPP--KY 74 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTSCG--GG
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHH----HCCCCCCc--cEEEECCEECCCCCh--hh
Confidence 3889999 69986655 88999985 9999999999999999999 99999998 999999977643221 24
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 75 REVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp TTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 679999 99999999999999988654
No 57
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.19 E-value=9.4e-12 Score=138.18 Aligned_cols=95 Identities=18% Similarity=0.260 Sum_probs=76.1
Q ss_pred ceeeecc-cccCCCC-c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC--CcHH
Q psy9513 6 QLHIMGI-RNFPADK-N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK--KDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~-~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~--~~~~ 77 (1491)
.|+++|+ ++|++.. + .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+.. ....
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l----~Gl~~p~~--G~I~~~G~~i~~~~~~~~ 80 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNF----NGILKPSS--GRILFDNKPIDYSRKGIM 80 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECCCSHHHHH
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH----HcCCCCCC--eEEEECCEECCcccccHH
Confidence 4899999 6997543 5 88999875 9999999999999999999 99999998 999999987632 1223
Q ss_pred HhhcCcccc-ccCC-CCCCccHHHHHHhhcc
Q psy9513 78 SASSGKNFV-HDPR-IGKKDETHAIVKLQCT 106 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~-~~~~~~~~~~v~~~~~ 106 (1491)
..+..++|+ |++. .....++..+|.+...
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~ 111 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAV 111 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHH
Confidence 456789999 9863 3446789999887654
No 58
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.19 E-value=9.7e-12 Score=143.49 Aligned_cols=93 Identities=13% Similarity=0.235 Sum_probs=73.1
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+.... ...
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~i~~~~--~~~ 82 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMI----AGLEEPTE--GRIYFGDRDVTYLP--PKD 82 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTSC--GGG
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHH----HcCCCCCc--eEEEECCEECCCCC--hhh
Confidence 4899999 69986555 88999986 9999999999999999999 99999998 99999997764321 124
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 83 r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 83 RNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp GTEEEEEC------CCCHHHHHHTTCC
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 679999 99988888999999988653
No 59
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.18 E-value=1.6e-11 Score=141.15 Aligned_cols=93 Identities=13% Similarity=0.252 Sum_probs=78.4
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|.++|..+..... ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~i~~~~~--~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTI----AGIYKPTS--GKIYFDEKDVTELPP--KD 74 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTSCG--GG
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHH----hcCCCCCc--eEEEECCEECCcCCH--hH
Confidence 3889999 69987656 88999976 9999999999999999999 99999998 999999977643221 24
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
+.++|+ |++.+++..++..+|.+.+.
T Consensus 75 r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (362)
T 2it1_A 75 RNVGLVFQNWALYPHMTVYKNIAFPLE 101 (362)
T ss_dssp TTEEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 679999 99999888999999988653
No 60
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.18 E-value=1.5e-11 Score=135.07 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=72.7
Q ss_pred eeeecc-ccc-CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhh
Q psy9513 7 LHIMGI-RNF-PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~-~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (1491)
|+++|+ .+| ++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+........+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~~~~~~ 75 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL----ERFYQPTA--GEITIDGQPIDNISLENWR 75 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHH----TTSSCCSB--SCEEETTEESTTTSCSCCT
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCEEhhhCCHHHHH
Confidence 678898 588 44455 88999876 9999999999999999999 99999998 9999998766332222234
Q ss_pred cCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 81 SGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 81 ~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..++|+ |++.+++ .++..++.+.
T Consensus 76 ~~i~~v~q~~~l~~-~tv~enl~~~ 99 (243)
T 1mv5_A 76 SQIGFVSQDSAIMA-GTIRENLTYG 99 (243)
T ss_dssp TTCCEECCSSCCCC-EEHHHHTTSC
T ss_pred hhEEEEcCCCcccc-ccHHHHHhhh
Confidence 578999 9887765 5888888764
No 61
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.18 E-value=1.5e-11 Score=137.00 Aligned_cols=93 Identities=18% Similarity=0.265 Sum_probs=75.5
Q ss_pred ceeeecc-cccCC---CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGI-RNFPA---DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~---~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|+++|+ .+|++ ..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+......
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l----~Gl~~p~~--G~I~~~g~~i~~~~~~ 89 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL----QNLYQPTG--GKVLLDGEPLVQYDHH 89 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--CEEEECCEEcccCCHH
Confidence 4889999 58975 445 88999876 9999999999999999999 99999998 9999998766332233
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |++.+++ .++..+|.+..
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 90 YLHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp HHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred HHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 345568999 9887776 59999998754
No 62
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.18 E-value=1.8e-11 Score=140.01 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=78.4
Q ss_pred ceeeecc-ccc-CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNF-PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~-~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|+++|+ ++| ++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... ..
T Consensus 14 ~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~i~~~~--~~ 85 (355)
T 1z47_A 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI----AGLERPTK--GDVWIGGKRVTDLP--PQ 85 (355)
T ss_dssp EEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTCC--GG
T ss_pred eEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--cEEEECCEECCcCC--hh
Confidence 4889999 699 76656 88999875 9999999999999999999 99999998 99999987764311 23
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
++.++|+ |++.+++..++..+|.+.+.
T Consensus 86 ~r~ig~v~Q~~~l~~~ltv~eni~~~l~ 113 (355)
T 1z47_A 86 KRNVGLVFQNYALFQHMTVYDNVSFGLR 113 (355)
T ss_dssp GSSEEEECGGGCCCTTSCHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 4679999 99999999999999988654
No 63
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.17 E-value=1.5e-11 Score=135.03 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=74.1
Q ss_pred ceeeecc-ccc--CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNF--PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~--~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.++++|+ ++| ++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+.......
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~I~i~g~~~~~~~~~~ 80 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI----QRFYIPEN--GQVLIDGHDLALADPNW 80 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEETTTSCHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--cEEEECCEEhhhCCHHH
Confidence 4788999 689 34445 88888875 9999999999999999999 99999998 99999997764333333
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.+..++|+ |++.+++ .++..++.+.
T Consensus 81 ~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 81 LRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp HHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred HHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 45568999 9887765 5899998764
No 64
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.15 E-value=1.6e-11 Score=136.92 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=74.0
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC--CCcHHH
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG--KKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~--~~~~~~ 78 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+. ......
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l----~Gl~~p~~--G~I~~~g~~~~~~~~~~~~ 94 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNIL----NAYEPATS--GTVNLFGKMPGKVGYSAET 94 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEETTBCCC---CCHHH
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCCC--eEEEECCEEcccccCCHHH
Confidence 3889999 69986556 88999875 9999999999999999999 99999998 99999997764 222333
Q ss_pred hhcCcccc-ccCCCCC--CccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGK--KDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~--~~~~~~~v~~~ 104 (1491)
.+..++|+ |++.+.. ..++..++.+.
T Consensus 95 ~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 95 VRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp HHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred HcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 45679999 8865433 34898988764
No 65
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.15 E-value=2e-11 Score=137.29 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=78.2
Q ss_pred ceeeecc-cccCC-CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFPA-DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~-~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|.++|+ .+|++ ..+ .+|+|+++ +++||||||||||||+++| +|.++|.+ |.|+++|..+........
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll----~gl~~p~~--G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL----FRFYDISS--GCIRIDGQDISQVTQASL 126 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHH----TTSSCCSE--EEEEETTEETTSBCHHHH
T ss_pred eEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHH----HcCCCCCC--cEEEECCEEcccCCHHHH
Confidence 4889999 58853 345 88999986 9999999999999999999 99999998 999999988865555566
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+..++|+ |++.++ ..++..+|.+..
T Consensus 127 r~~i~~v~Q~~~lf-~~Tv~eNi~~~~ 152 (306)
T 3nh6_A 127 RSHIGVVPQDTVLF-NDTIADNIRYGR 152 (306)
T ss_dssp HHTEEEECSSCCCC-SEEHHHHHHTTS
T ss_pred hcceEEEecCCccC-cccHHHHHHhhc
Confidence 7789999 998877 459999998754
No 66
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.14 E-value=2.2e-11 Score=132.98 Aligned_cols=62 Identities=19% Similarity=0.356 Sum_probs=54.8
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------H---h--hcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------S---D--QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~---~--~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++|||||+.+|++|+|||||+|||+.+. . . ..|.|+|+||||++++. .| |++++|.+|
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~----d~v~~l~~G 204 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV----DVIIVMSGG 204 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS----SEEEEEETT
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC----CEEEEEeCC
Confidence 68999999999999999999999999999887 2 1 24789999999999875 68 999999877
No 67
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.14 E-value=5.6e-11 Score=133.04 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=55.0
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-----H----hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA-----S----DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-----~----~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++|||||+.+|++|+|||||+|||+.+. . ...|.|||+||||++++. .| |++++|.+|
T Consensus 164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~----d~i~~l~~G 234 (290)
T 2bbs_A 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KA----DKILILHEG 234 (290)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HS----SEEEEEETT
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cC----CEEEEEECC
Confidence 68999999999999999999999999999988 1 123789999999999886 58 999999877
No 68
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.14 E-value=2.4e-11 Score=139.04 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=77.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.++|+ ++|++. + .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... ..++
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~~~g~~i~~~~--~~~r 72 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELI----AGFHVPDS--GRILLDGKDVTDLS--PEKH 72 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHH----HTSSCCSE--EEEEETTEECTTSC--HHHH
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHH----HcCCCCCC--cEEEECCEECCCCc--hhhC
Confidence 678899 699866 7 88999876 9999999999999999999 99999998 99999997764321 2346
Q ss_pred Ccccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
.++|+ |++.+++..++..+|.+.+.
T Consensus 73 ~ig~v~Q~~~l~~~ltv~enl~~~~~ 98 (348)
T 3d31_A 73 DIAFVYQNYSLFPHMNVKKNLEFGMR 98 (348)
T ss_dssp TCEEECTTCCCCTTSCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHHHHH
Confidence 79999 99999999999999988653
No 69
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.14 E-value=2.1e-11 Score=134.36 Aligned_cols=93 Identities=18% Similarity=0.282 Sum_probs=74.2
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCC--CCCCCCCCceEeeCCCCCCCcH-HH
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNE--YPQGASSGKNFVHDPRIGKKDE-AS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~--~~~~~~~g~~~~~~~~~~~~~~-~~ 78 (1491)
|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|. ++|.+ |.|.++|..+..... ..
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l----~Gl~~~~p~~--G~I~~~g~~~~~~~~~~~ 77 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKIL----AGDPEYTVER--GEILLDGENILELSPDER 77 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH----HTCTTCEEEE--EEEEETTEECTTSCHHHH
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCCCc--eEEEECCEECCCCCHHHH
Confidence 889999 58986556 88888875 9999999999999999999 998 78887 999999977643222 22
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+.+++|+ |++.+++..++..++.+.+
T Consensus 78 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 105 (250)
T 2d2e_A 78 ARKGLFLAFQYPVEVPGVTIANFLRLAL 105 (250)
T ss_dssp HHTTBCCCCCCCC-CCSCBHHHHHHHHH
T ss_pred HhCcEEEeccCCccccCCCHHHHHHHHH
Confidence 34568899 9988888888888887654
No 70
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.13 E-value=2.1e-11 Score=141.18 Aligned_cols=95 Identities=14% Similarity=0.279 Sum_probs=77.9
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc----H
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD----E 76 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~----~ 76 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~~~~~~~~~~~ 76 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMI----AGLEEPSR--GQIYIGDKLVADPEKGIFV 76 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHH----HTSSCCSE--EEEEETTEEEEEGGGTEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHH----HcCCCCCc--cEEEECCEECccccccccC
Confidence 3889999 69986555 88999875 9999999999999999999 99999998 99999987653200 1
Q ss_pred HHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 77 ASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 77 ~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...++.++|+ |++.+++..++..+|.+.+.
T Consensus 77 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 107 (372)
T 1g29_1 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107 (372)
T ss_dssp CGGGSSEEEECSCCCCCTTSCHHHHHHHHHH
T ss_pred CHhHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 1224679999 99999999999999988654
No 71
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.13 E-value=2.8e-11 Score=151.66 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=88.1
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
.+||=++++++ +| .+.+|+..+.......+ | .++||+||+|.++++ +..+|+.+.
T Consensus 393 GKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~--------r-----~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~ 458 (598)
T 3qf4_B 393 GKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSL--------R-----SSIGIVLQDTILFST-TVKENLKYGNPGATD 458 (598)
T ss_dssp STTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHH--------H-----HHEEEECTTCCCCSS-BHHHHHHSSSTTCCT
T ss_pred cHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHH--------H-----hceEEEeCCCccccc-cHHHHHhcCCCCCCH
Confidence 44554444444 22 25566666655443222 1 259999999988865 877776321
Q ss_pred --------------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhh
Q psy9513 1242 --------------------------------RI---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQ 1278 (1491)
Q Consensus 1242 --------------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~ 1278 (1491)
.+ +|||++|||||+.+|++|+|||||++||+.+. ...
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 538 (598)
T 3qf4_B 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM 538 (598)
T ss_dssp THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc
Confidence 01 68999999999999999999999999999887 223
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.|.|+|+||||++.+.. | |++++|++|
T Consensus 539 ~~~t~i~itH~l~~~~~-~----d~i~~l~~G 565 (598)
T 3qf4_B 539 EGKTSIIIAHRLNTIKN-A----DLIIVLRDG 565 (598)
T ss_dssp TTSEEEEESCCTTHHHH-C----SEEEEECSS
T ss_pred CCCEEEEEecCHHHHHc-C----CEEEEEECC
Confidence 58999999999999865 8 999999887
No 72
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.13 E-value=2.5e-11 Score=151.56 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=82.8
Q ss_pred cccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH-------H-----------------
Q psy9513 1187 IEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-------R----------------- 1242 (1491)
Q Consensus 1187 ~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~-------~----------------- 1242 (1491)
+.+|+..+.......+ | .+++|+||++.++.+ +..+|+.+. .
T Consensus 400 i~i~g~~i~~~~~~~~--------r-----~~i~~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l 465 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDL--------R-----GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISL 465 (587)
T ss_dssp EEESSSBGGGBCHHHH--------H-----HHEEEECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTS
T ss_pred EEECCEEcccCCHHHH--------H-----hheEEECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhc
Confidence 5666666655543222 1 259999999999876 888876321 0
Q ss_pred ---H--------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHh
Q psy9513 1243 ---I--------------VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLT 1297 (1491)
Q Consensus 1243 ---l--------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~ 1297 (1491)
+ +|||++|||||+.+|++|+|||||++||+.+. ....|.|+|+||||++.+. .|
T Consensus 466 ~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~ 544 (587)
T 3qf4_A 466 PEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LA 544 (587)
T ss_dssp SSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TS
T ss_pred ccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hC
Confidence 0 68999999999999999999999999999887 2235899999999999875 68
Q ss_pred ccccceEEEEecC
Q psy9513 1298 AIDRAYVVRIVRD 1310 (1491)
Q Consensus 1298 ~~~~~~~~~l~~~ 1310 (1491)
|++++|++|
T Consensus 545 ----d~i~vl~~G 553 (587)
T 3qf4_A 545 ----DKILVLHEG 553 (587)
T ss_dssp ----SEEEEEETT
T ss_pred ----CEEEEEECC
Confidence 999999887
No 73
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.13 E-value=3.1e-11 Score=150.71 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=88.3
Q ss_pred cccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHH------
Q psy9513 1173 RRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV------ 1241 (1491)
Q Consensus 1173 ~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~------ 1241 (1491)
.+||=++++++ +| .+.+|+..+.......+ | .++||+||+|.++++ +..+|+.+.
T Consensus 379 GKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~--------r-----~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~ 444 (578)
T 4a82_A 379 GKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSL--------R-----NQIGLVQQDNILFSD-TVKENILLGRPTATD 444 (578)
T ss_dssp SHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHH--------H-----HTEEEECSSCCCCSS-BHHHHHGGGCSSCCH
T ss_pred hHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHH--------h-----hheEEEeCCCccCcc-cHHHHHhcCCCCCCH
Confidence 44554444444 22 25666666655443222 1 259999999999877 888876321
Q ss_pred -H-------------------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhh
Q psy9513 1242 -R-------------------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQ 1278 (1491)
Q Consensus 1242 -~-------------------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~ 1278 (1491)
. + +|||++|||||+.+|++|+|||||+|||+.+. ...
T Consensus 445 ~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~ 524 (578)
T 4a82_A 445 EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524 (578)
T ss_dssp HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc
Confidence 0 1 68999999999999999999999999999887 223
Q ss_pred cCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1279 KNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1279 ~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+.|+|+||||++.+.. | |++++|++|
T Consensus 525 ~~~t~i~itH~l~~~~~-~----d~i~~l~~G 551 (578)
T 4a82_A 525 KDRTTLIVAHRLSTITH-A----DKIVVIENG 551 (578)
T ss_dssp TTSEEEEECSSGGGTTT-C----SEEEEEETT
T ss_pred CCCEEEEEecCHHHHHc-C----CEEEEEECC
Confidence 57899999999998764 7 999999887
No 74
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.13 E-value=1.4e-11 Score=141.77 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=77.9
Q ss_pred eeeecc-cccCCCC--c-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc---H
Q psy9513 7 LHIMGI-RNFPADK--N-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD---E 76 (1491)
Q Consensus 7 l~i~~~-~~~~~~~--~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~---~ 76 (1491)
|+++|+ ++|++.. + .+|+|+++ +++|+||||||||||+++| +|..+|.+ |.|+++|..+.... .
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~i----aGl~~p~~--G~I~i~g~~i~~~~~~~~ 77 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRII----AGLDVPST--GELYFDDRLVASNGKLIV 77 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHH----HTSSCCSE--EEEEETTEEEEETTEESS
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHH----hCCCCCCc--eEEEECCEECcccccccC
Confidence 889999 6998766 6 78999876 9999999999999999999 99999998 99999987652200 1
Q ss_pred HHhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 77 ASASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 77 ~~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
...++.++|+ |++.+++..++..+|.+.+.
T Consensus 78 ~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 78 PPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp CGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred ChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 1234679999 99999999999999988654
No 75
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.13 E-value=3e-11 Score=131.62 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=73.5
Q ss_pred eeeecc-cccCCCCcceEEeecc--ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCc
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP--LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGK 83 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~--~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (1491)
|+++|+ ++|++ ...+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|..+.... ..+..+
T Consensus 2 l~~~~l~~~y~~-~l~~isl~i~~e~~~liG~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g~~~~~~~--~~~~~i 72 (240)
T 2onk_A 2 FLKVRAEKRLGN-FRLNVDFEMGRDYCVLLGPTGAGKSVFLELI----AGIVKPDR--GEVRLNGADITPLP--PERRGI 72 (240)
T ss_dssp CEEEEEEEEETT-EEEEEEEEECSSEEEEECCTTSSHHHHHHHH----HTSSCCSE--EEEEETTEECTTSC--TTTSCC
T ss_pred EEEEEEEEEeCC-EEeeeEEEECCEEEEEECCCCCCHHHHHHHH----hCCCCCCc--eEEEECCEECCcCc--hhhCcE
Confidence 678898 58974 2488888875 9999999999999999999 99999998 99999987663211 124578
Q ss_pred ccc-ccCCCCCCccHHHHHHhhc
Q psy9513 84 NFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 84 ~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+|+ |++.+++..++..++.+.+
T Consensus 73 ~~v~q~~~l~~~ltv~enl~~~~ 95 (240)
T 2onk_A 73 GFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp BCCCSSCCCCTTSCHHHHHHTTC
T ss_pred EEEcCCCccCCCCcHHHHHHHHH
Confidence 999 9988888889999988754
No 76
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.12 E-value=2.9e-10 Score=113.00 Aligned_cols=57 Identities=32% Similarity=0.461 Sum_probs=48.9
Q ss_pred HHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1249 ALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1249 ~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|++|+.+|++|+|||||+|||+.+. ....|.|+|+||||.+ +..+| |+++.+..+
T Consensus 73 alaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~----d~ii~l~~~ 138 (148)
T 1f2t_B 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA----DHVIRISLE 138 (148)
T ss_dssp HHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC----SEEEEEEEE
T ss_pred HHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC----CEEEEEEcC
Confidence 899999999999999999999999987 2344789999999985 45678 999999643
No 77
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.09 E-value=5.6e-11 Score=148.72 Aligned_cols=120 Identities=18% Similarity=0.226 Sum_probs=88.6
Q ss_pred CcccceeEEEEe--cc---ccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhHHH----
Q psy9513 1172 KRRTYNYRVVQK--KN---GIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR---- 1242 (1491)
Q Consensus 1172 ~~~~yn~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~~~---- 1242 (1491)
..+||=++++++ +| .+.+|+.++.......+ | .++||+||+|.++++ +..+|+.+..
T Consensus 380 sGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~--------~-----~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~ 445 (582)
T 3b5x_A 380 SGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL--------R-----RHFALVSQNVHLFND-TIANNIAYAAEGEY 445 (582)
T ss_pred CCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHH--------h-----cCeEEEcCCCccccc-cHHHHHhccCCCCC
Confidence 356666666655 32 25666665543322111 1 259999999998875 7777652210
Q ss_pred -----------------------------------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------H
Q psy9513 1243 -----------------------------------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------S 1276 (1491)
Q Consensus 1243 -----------------------------------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~ 1276 (1491)
+ +|||++|||||+.+|++|+|||||++||+.+. .
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 525 (582)
T 3b5x_A 446 TREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE 525 (582)
T ss_pred CHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 1 68999999999999999999999999999987 1
Q ss_pred hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1277 DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1277 ~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
...|.|+|+||||++.+. .| |++++|++|
T Consensus 526 ~~~~~tvi~itH~~~~~~-~~----d~i~~l~~G 554 (582)
T 3b5x_A 526 LQKNKTVLVIAHRLSTIE-QA----DEILVVDEG 554 (582)
T ss_pred HcCCCEEEEEecCHHHHH-hC----CEEEEEECC
Confidence 234899999999999886 58 999999887
No 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.09 E-value=7.3e-11 Score=130.67 Aligned_cols=91 Identities=19% Similarity=0.311 Sum_probs=73.0
Q ss_pred ceeeecc-cccCCC---Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGI-RNFPAD---KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~---~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|+++|+ .+|++. .+ .+|+|+++ +++|+||||||||||+++| +|.++| + |.|.++|..+......
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~~-~--G~I~i~g~~i~~~~~~ 89 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL----YRFYDA-E--GDIKIGGKNVNKYNRN 89 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----TTSSCC-E--EEEEETTEEGGGBCHH
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHH----hccCCC-C--eEEEECCEEhhhcCHH
Confidence 4889999 589753 35 88999876 9999999999999999999 999986 6 9999998766332233
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..+..++|+ |++.+++ .++..++.+.
T Consensus 90 ~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 90 SIRSIIGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp HHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred HHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence 456779999 9988765 5899988764
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.08 E-value=2.4e-11 Score=141.19 Aligned_cols=120 Identities=15% Similarity=0.061 Sum_probs=88.2
Q ss_pred CcccceeEEEEe----ccccccccccccchhhHHHHHHHHHHhhhhcccceEEEEccchhhhhhhhhHHHHhH-------
Q psy9513 1172 KRRTYNYRVVQK----KNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYV------- 1240 (1491)
Q Consensus 1172 ~~~~yn~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~n~~l~~i~~~~~~~~~L~~~~~~~~------- 1240 (1491)
..+||-++++++ .+.+.+|+..+.......+ | ..+||+||++.+++ +++.+|+.+
T Consensus 58 sGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~--------r-----r~ig~v~Q~~~lf~-~tv~enl~~~~~~~~~ 123 (390)
T 3gd7_A 58 SGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQW--------R-----KAFGVIPQKVFIFS-GTFRKNLDPNAAHSDQ 123 (390)
T ss_dssp SSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHH--------H-----HTEEEESCCCCCCS-EEHHHHHCTTCCSCHH
T ss_pred ChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHH--------h-----CCEEEEcCCcccCc-cCHHHHhhhccccCHH
Confidence 456676666665 2235666666654433211 1 24899999998886 477776521
Q ss_pred -------------------HH-----------H---hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH--------Hhhc
Q psy9513 1241 -------------------VR-----------I---VRDHKALAETFSRNCGIFALDEPTTNLDIKNA--------SDQK 1279 (1491)
Q Consensus 1241 -------------------~~-----------l---~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~--------~~~~ 1279 (1491)
.. | ++||++|||||+.+|++|||||||+|||+... ....
T Consensus 124 ~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~ 203 (390)
T 3gd7_A 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFA 203 (390)
T ss_dssp HHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC
Confidence 11 2 68999999999999999999999999999887 1234
Q ss_pred CceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1280 NFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1280 ~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+.|+|+||||.+.+. .| |++++|++|
T Consensus 204 ~~tvi~vtHd~e~~~-~a----Dri~vl~~G 229 (390)
T 3gd7_A 204 DCTVILCEARIEAML-EC----DQFLVIEEN 229 (390)
T ss_dssp TSCEEEECSSSGGGT-TC----SEEEEEETT
T ss_pred CCEEEEEEcCHHHHH-hC----CEEEEEECC
Confidence 789999999987554 57 999999887
No 80
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.08 E-value=1.6e-10 Score=141.29 Aligned_cols=63 Identities=16% Similarity=0.375 Sum_probs=57.7
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. . ...|.|||+||||++++..+| |++++|..+
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~a----Dri~vl~~~ 462 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA----DRIIVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----SEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 79999999999999999999999999999987 2 245899999999999999999 999999765
No 81
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.08 E-value=1.3e-10 Score=145.87 Aligned_cols=87 Identities=20% Similarity=0.256 Sum_probs=72.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhH---H--------------------------------------HH---hhhHHHHHHH
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV---V--------------------------------------RI---VRDHKALAET 1253 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~---~--------------------------------------~l---~~~~~~~a~~ 1253 (1491)
+++|+||++.++++ +..+|+.+ . .+ +|||++||||
T Consensus 419 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 419 KIGTVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp SEEEECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred ceEEEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 59999999988864 77776521 0 00 6899999999
Q ss_pred hhcCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1254 FSRNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1254 ~~~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
|+.+|++|+|||||++||+.+. ....|.|+|+||||++.+.. | |++++|++|
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~----d~i~~l~~G 557 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-A----NMVAVLDQG 557 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-S----SEEEEEETT
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-C----CEEEEEECC
Confidence 9999999999999999999987 12247899999999998864 8 999999887
No 82
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.07 E-value=5.9e-11 Score=132.04 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=72.2
Q ss_pred eeeecc-cccC--C---CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH
Q psy9513 7 LHIMGI-RNFP--A---DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE 76 (1491)
Q Consensus 7 l~i~~~-~~~~--~---~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~ 76 (1491)
|+++|+ ++|+ + ..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|..+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i----~Gl~~p~~--G~I~~~g~~~~~--- 73 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIV----AGLIEPTS--GDVLYDGERKKG--- 73 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----TTSSCCSE--EEEEETTEECCH---
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCCC--cEEEECCEECch---
Confidence 788999 5886 3 235 88898875 9999999999999999999 99999998 999999876632
Q ss_pred HHhhcCcccc-ccC-CCCCCccHHHHHHhhc
Q psy9513 77 ASASSGKNFV-HDP-RIGKKDETHAIVKLQC 105 (1491)
Q Consensus 77 ~~~~~~~~~~-q~~-~~~~~~~~~~~v~~~~ 105 (1491)
...+..++|+ |++ ...+..++..++.+.+
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 104 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAV 104 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTT
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHH
Confidence 1334578999 885 4455679999988754
No 83
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.06 E-value=1.4e-10 Score=126.00 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=66.4
Q ss_pred ceeeecc-cccC--CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFP--ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~--~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ ++|+ +..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~i~~~g---------- 69 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI----MGELEPSE--GKIKHSG---------- 69 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHH----TTSSCCSE--EEEEECS----------
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCcCCc--cEEEECC----------
Confidence 4889999 5884 3445 88998875 9999999999999999999 99999998 9999876
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
.++|+ |++.+++. ++..++.+.
T Consensus 70 ---~i~~v~q~~~~~~~-tv~enl~~~ 92 (229)
T 2pze_A 70 ---RISFCSQFSWIMPG-TIKENIIFG 92 (229)
T ss_dssp ---CEEEECSSCCCCSB-CHHHHHHTT
T ss_pred ---EEEEEecCCcccCC-CHHHHhhcc
Confidence 26788 88877664 899988764
No 84
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.06 E-value=2.7e-11 Score=139.79 Aligned_cols=156 Identities=20% Similarity=0.255 Sum_probs=78.0
Q ss_pred CcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 2 ALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 2 ~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
|.|..|+|.||++|++ ...++|..++++|+||||||||||++||.|+| |.....+.++.. . ..+ ++.
T Consensus 1 M~l~~L~i~nfr~~~~--~~~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll-g~~~~~s~r~~~-~--~~l-------i~~ 67 (322)
T 1e69_A 1 MRLKKLYLKGFKSFGR--PSLIGFSDRVTAIVGPNGSGKSNIIDAIKWVF-GEQSKKELRASE-K--FDM-------IFA 67 (322)
T ss_dssp CEEEEEEEESBTTBCS--CEEEECCSSEEEEECCTTTCSTHHHHHHHHTS-CC-----------C--CTT-------BCC
T ss_pred CeEeEEEEeCceeecC--CeEEecCCCcEEEECCCCCcHHHHHHHHHHHh-CCCchhhccccc-H--HHh-------hcc
Confidence 4577899999999962 35788888899999999999999999999998 432222211210 0 000 000
Q ss_pred CccccccCCCCCCccHHHHHHhhccccCCCceEEEEeEEEEeecCCccccccccceEeeecCCCceeeeccccchhhHHh
Q psy9513 82 GKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEM 161 (1491)
Q Consensus 82 ~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~i~r~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~q~~~~~~i 161 (1491)
+.. .......+.|.+.|.+ .+..+.+.|.+... |. + .+++ +|...+. . ++...+
T Consensus 68 g~~-------~~~~~~~~~v~~~f~~-~~~~~~i~r~~~~~---~~-------~-~~~i---ng~~~~~--~--~~~~~~ 121 (322)
T 1e69_A 68 GSE-------NLPPAGSAYVELVFEE-NGEEITVARELKRT---GE-------N-TYYL---NGSPVRL--K--DIRDRF 121 (322)
T ss_dssp CBT-------TBCCCSEEEEEEEEES-SSCEEEEEEEEETT---SC-------E-EEEE---TTEEECH--H--HHHHHT
T ss_pred Ccc-------CCCCCceEEEEEEEEe-CCeEEEEEEEEEcC---Cc-------e-EEEE---CCcCccH--H--HHHHHH
Confidence 000 0011223566777764 34578888876532 11 1 1223 3644321 2 333322
Q ss_pred HhhhCCcHhhhhcceeeccCCCCCCC-CcchhhHHHHHHh
Q psy9513 162 CNLIGVSKAILNNVIFCHQENSSWPL-DEGKKVKEIFDEI 200 (1491)
Q Consensus 162 ~~~~g~~~~~~~~~~f~~q~e~~~~l-~~~~~~k~~~~~i 200 (1491)
..+|++...+ .+++||+....+ ..|.+++.+|+..
T Consensus 122 -~~~g~~~~~~---~lv~qg~i~~~~~~~p~~rr~~ld~~ 157 (322)
T 1e69_A 122 -AGTGLGVDFY---SIVGQGQIDRIVNASPEELRLESSKH 157 (322)
T ss_dssp -TTSSTTTTCC---SEEEHHHHHHHHTC------------
T ss_pred -HHcCCChhhe---eeEehhhHHHHHhccHHHHHHHHHHh
Confidence 2345544333 356777765433 3688888888874
No 85
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.06 E-value=2.1e-10 Score=140.85 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=73.6
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH---------HH-----------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV---------RI-----------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
..+||+||++.+.+.+++.+++... .+ ++||++||+||+.+|++||||
T Consensus 347 ~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD 426 (538)
T 1yqt_A 347 LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD 426 (538)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4689999998776667765554211 00 689999999999999999999
Q ss_pred CCCCCCChHhH---------Hh-hcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1265 EPTTNLDIKNA---------SD-QKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~~-~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|||+|||+.+. .. ..|.|||+||||++++..+| |++++|..
T Consensus 427 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~----drv~vl~~ 477 (538)
T 1yqt_A 427 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS----DRLMVFEG 477 (538)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC----SEEEEEEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEeC
Confidence 99999999987 12 35899999999999999999 99999974
No 86
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.06 E-value=5.8e-11 Score=132.01 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=73.2
Q ss_pred ceeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCC--CCCCCCCCceEeeCCCCCCCcH-H
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNE--YPQGASSGKNFVHDPRIGKKDE-A 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~--~~~~~~~g~~~~~~~~~~~~~~-~ 77 (1491)
.|+++|+ ++|++..+ .+|+|+++ +++|+||||||||||+++| +|. ++|.+ |.|.++|..+..... .
T Consensus 20 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l----~Gl~~~~p~~--G~I~~~g~~i~~~~~~~ 93 (267)
T 2zu0_C 20 MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATL----AGREDYEVTG--GTVEFKGKDLLALSPED 93 (267)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHH----HTCTTCEEEE--EEEEETTEEGGGSCHHH
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCCCC--eEEEECCEECCcCCHHH
Confidence 4889999 68976556 88999876 9999999999999999999 998 46777 999999876633222 2
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
..+.+++|+ |++.+++..++..++.+.
T Consensus 94 ~~~~~i~~v~Q~~~l~~~~tv~e~~~~~ 121 (267)
T 2zu0_C 94 RAGEGIFMAFQYPVEIPGVSNQFFLQTA 121 (267)
T ss_dssp HHHHTEEEECSSCCCCTTCBHHHHHHHH
T ss_pred HhhCCEEEEccCccccccccHHHHHHHH
Confidence 234568899 998888877887777654
No 87
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.06 E-value=1.1e-10 Score=128.48 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=68.1
Q ss_pred ceeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|+++|+ ++|+ +..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l----~Gl~~p~~--G~I~~------------- 64 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLL----LGIHRPIQ--GKIEV------------- 64 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHH----TTSSCCSE--EEEEE-------------
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--cEEEE-------------
Confidence 3889999 5897 6556 88898875 9999999999999999999 99999998 98762
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
+..++|+ |++.+++..++..++.+..
T Consensus 65 ~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 65 YQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp CSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred eccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 2357889 9888777789999988754
No 88
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.05 E-value=2.8e-10 Score=140.93 Aligned_cols=89 Identities=18% Similarity=0.229 Sum_probs=74.1
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH---------HH-----------------------hhhHHHHHHHhhcCCCeeEEc
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV---------RI-----------------------VRDHKALAETFSRNCGIFALD 1264 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~---------~l-----------------------~~~~~~~a~~~~~~~~~l~lD 1264 (1491)
..+||+||++.+...+++.+++... .+ ++||++||+||+.+|++||||
T Consensus 417 ~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD 496 (607)
T 3bk7_A 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD 496 (607)
T ss_dssp CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 4699999998777777776654211 00 689999999999999999999
Q ss_pred CCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1265 EPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1265 Ep~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|||+|||+.+. . ...|.|+|+||||++++..+| |++++|..
T Consensus 497 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~a----drv~vl~~ 547 (607)
T 3bk7_A 497 EPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS----DRLIVFEG 547 (607)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----SEEEEEEE
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEcC
Confidence 99999999987 1 235899999999999999999 99999974
No 89
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.7e-10 Score=140.68 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|+|||||+|||+.+. . ...|.|||+||||++++..+| |++++|..+
T Consensus 472 qkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~a----Drvivl~~~ 544 (608)
T 3j16_B 472 ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA----DKVIVFEGI 544 (608)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC----SEEEECEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEeCC
Confidence 79999999999999999999999999999877 2 245899999999999999999 999999753
No 90
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=133.12 Aligned_cols=89 Identities=10% Similarity=0.132 Sum_probs=73.7
Q ss_pred ceeeecc-ccc--CCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNF--PADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~--~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ ++| ++..+ .+|+|+++ +++|+||||||||||+++| +|..+ .+ |.|+++|..+.......
T Consensus 19 ~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~i----aGl~~-~~--G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 19 QMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF----LRLLN-TE--GEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp CEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHH----HTCSE-EE--EEEEESSCBTTSSCHHH
T ss_pred eEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHH----hCCCC-CC--eEEEECCEECCcCChHH
Confidence 4899999 699 54556 89999986 9999999999999999999 99987 66 99999998875544444
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHH
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVK 102 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~ 102 (1491)
.++.++|+ |++.+++ .++..++.
T Consensus 92 ~rr~ig~v~Q~~~lf~-~tv~enl~ 115 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFS-GTFRKNLD 115 (390)
T ss_dssp HHHTEEEESCCCCCCS-EEHHHHHC
T ss_pred HhCCEEEEcCCcccCc-cCHHHHhh
Confidence 56789999 9988775 58888775
No 91
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.01 E-value=2e-10 Score=125.38 Aligned_cols=80 Identities=19% Similarity=0.444 Sum_probs=66.1
Q ss_pred ceeeecc-cccC--CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFP--ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~--~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ .+|+ +..+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l----~Gl~~p~~--G~I~~~g---------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSAL----LAEMDKVE--GHVAIKG---------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHH----TTCSEEEE--EEEEECS----------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--ceEEECC----------
Confidence 3889999 5897 3455 88999876 9999999999999999999 99999998 9999877
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.++|+ |++.+ +..++..++.+..
T Consensus 67 ---~i~~v~Q~~~~-~~~tv~enl~~~~ 90 (237)
T 2cbz_A 67 ---SVAYVPQQAWI-QNDSLRENILFGC 90 (237)
T ss_dssp ---CEEEECSSCCC-CSEEHHHHHHTTS
T ss_pred ---EEEEEcCCCcC-CCcCHHHHhhCcc
Confidence 25788 87754 4678888887643
No 92
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.01 E-value=1.9e-10 Score=143.98 Aligned_cols=87 Identities=26% Similarity=0.367 Sum_probs=73.1
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH---------------------------------------H---hhhHHHHHHHhh
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR---------------------------------------I---VRDHKALAETFS 1255 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~---------------------------------------l---~~~~~~~a~~~~ 1255 (1491)
+++|+||+|.++++ +..+|+.+.. + +|||++|||||+
T Consensus 418 ~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 418 QVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp TEEEECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 59999999998875 7777752210 0 689999999999
Q ss_pred cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
.+|++|+|||||++||+.+. ....|.|+|+||||++.+. .| |++++|++|
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~----d~i~~l~~G 554 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QA----DEIVVVEDG 554 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TC----SEEEEEETT
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hC----CEEEEEECC
Confidence 99999999999999999987 1234899999999999875 57 999999887
No 93
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.00 E-value=2e-10 Score=125.80 Aligned_cols=88 Identities=10% Similarity=0.147 Sum_probs=69.7
Q ss_pred eeeecccccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcC
Q psy9513 7 LHIMGIRNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSG 82 (1491)
Q Consensus 7 l~i~~~~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 82 (1491)
|+++|+. |. .+ .+++|+++ +++|+||||||||||+++| +|.++|. |.|.++|..+........+..
T Consensus 5 l~~~~l~-~~--~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l----~Gl~~p~---G~i~~~g~~~~~~~~~~~~~~ 74 (249)
T 2qi9_C 5 MQLQDVA-ES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARM----AGMTSGK---GSIQFAGQPLEAWSATKLALH 74 (249)
T ss_dssp EEEEEEE-ET--TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHH----TTSSCCE---EEEEETTEEGGGSCHHHHHHH
T ss_pred EEEEceE-EE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCC---eEEEECCEECCcCCHHHHhce
Confidence 7888883 32 35 88888875 9999999999999999999 9999885 899999876633223334456
Q ss_pred cccc-ccCCCCCCccHHHHHHhh
Q psy9513 83 KNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 83 ~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
++|+ |++.+++..++..++.+.
T Consensus 75 i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 75 RAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp EEEECSCCCCCTTCBHHHHHHTT
T ss_pred EEEECCCCccCCCCcHHHHHHHh
Confidence 8999 998887778999998864
No 94
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.99 E-value=2.3e-09 Score=123.43 Aligned_cols=51 Identities=35% Similarity=0.511 Sum_probs=44.7
Q ss_pred CCcccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 1 m~~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
||.+.+|.+.||++|. ..+++|..++++|+||||||||||++||.|+++|.
T Consensus 3 ~M~i~~L~l~~~~~~~---~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~~g~ 53 (359)
T 2o5v_A 3 DVRLSALSTLNYRNLA---PGTLNFPEGVTGIYGENGAGKTNLLEAAYLALTGQ 53 (359)
T ss_dssp CCCEEEEEEESBTTCC---SEEEECCSEEEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred CcEEeEEEEeCcccee---eeEEEEcCCeEEEECCCCCChhHHHHHHHHhccCC
Confidence 3788899999998885 35777777799999999999999999999999886
No 95
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.94 E-value=4.1e-10 Score=152.85 Aligned_cols=87 Identities=23% Similarity=0.300 Sum_probs=74.8
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH-------H----------------------------------hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR-------I----------------------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~-------l----------------------------------~~~~~~~a~~~~~ 1256 (1491)
++|||||+|.++.+ +..+|+.+.. + +|||++|||||+.
T Consensus 465 ~i~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~ 543 (1284)
T 3g5u_A 465 IIGVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543 (1284)
T ss_dssp HEEEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHH
T ss_pred heEEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhc
Confidence 49999999998877 8888864321 0 6899999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||++||+.+. ....|.|+|+|||++..+.. | |++++|++|
T Consensus 544 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~----d~i~vl~~G 600 (1284)
T 3g5u_A 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-A----DVIAGFDGG 600 (1284)
T ss_dssp CCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-C----SEEEECSSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-C----CEEEEEECC
Confidence 9999999999999999886 23458999999999999865 7 999999887
No 96
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.94 E-value=9e-09 Score=105.16 Aligned_cols=127 Identities=20% Similarity=0.279 Sum_probs=83.9
Q ss_pred HHHHHhHHHHHHHhcccCCCcceeEEeeccCCCCCCCcccceeEEEEeccccccccccccchhhHHHHHHHHHHhhhhcc
Q psy9513 1136 KMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQK 1215 (1491)
Q Consensus 1136 k~~~in~~~~e~~~~~~~G~~i~~i~I~~~~~~~~~~~~~yn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~ 1215 (1491)
-+..||..+.+++..++.|.... +.+.....+ -++.+.+.+..++.....-...|+|+
T Consensus 12 ~f~~i~~~f~~~f~~L~~~g~~~-l~l~~~~~~-----~~~gl~i~~~~~~~~~~~~~~LSgGe---------------- 69 (173)
T 3kta_B 12 TFEAISRNFSEIFAKLSPGGSAR-LILENPEDP-----FSGGLEIEAKPAGKDVKRIEAMSGGE---------------- 69 (173)
T ss_dssp HHHHHHHHHHHHHHHHSTTCEEE-EEESCSSSG-----GGSCEEEEEETTSSSCCCGGGCCHHH----------------
T ss_pred HHHHHHHHHHHHHHHhCCCCEEE-EEeeCCCCc-----cccCceEEecCCCccccccccCCHHH----------------
Confidence 46778999999999999887543 222211111 22345555555554443333445555
Q ss_pred cceEEEEccchhhhhhhhhHHHHhHHHHhhhHHHHHHHhhc----CCCeeEEcCCCCCCChHhH--------HhhcCceE
Q psy9513 1216 NFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSR----NCGIFALDEPTTNLDIKNA--------SDQKNFQL 1283 (1491)
Q Consensus 1216 n~~l~~i~~~~~~~~~L~~~~~~~~~~l~~~~~~~a~~~~~----~~~~l~lDEp~~~lD~~~~--------~~~~~~~~ 1283 (1491)
++|++||++|+. +|++++|||||+|||+.+. ....+.++
T Consensus 70 -----------------------------kqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ 120 (173)
T 3kta_B 70 -----------------------------KALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQF 120 (173)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEE
T ss_pred -----------------------------HHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEE
Confidence 455689998874 4699999999999999887 22346789
Q ss_pred EEEccCHHHHHHHhccccceEEEEecCCCcceeeee
Q psy9513 1284 IVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHL 1319 (1491)
Q Consensus 1284 i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~ 1319 (1491)
|+|||+...+ .+| |+++.+... .+.+.+..
T Consensus 121 ivith~~~~~-~~a----d~i~~v~~~-~g~s~~~~ 150 (173)
T 3kta_B 121 IVITLRDVMM-ANA----DKIIGVSMR-DGVSKVVS 150 (173)
T ss_dssp EEECSCHHHH-TTC----SEEEEEEEE-TTEEEEEE
T ss_pred EEEEecHHHH-HhC----CEEEEEEec-CCEEEEEE
Confidence 9999997654 567 999988653 34444443
No 97
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.93 E-value=7.2e-10 Score=136.05 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=57.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||++||+.+. ....|.|||+||||++++..+| |++++|..+
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~----dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLS----DIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----SEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----CEEEEEcCc
Confidence 79999999999999999999999999999976 3345899999999999999999 999999754
No 98
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.92 E-value=1e-09 Score=135.87 Aligned_cols=63 Identities=21% Similarity=0.391 Sum_probs=57.5
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....|.|||+||||++++..+| |++++|..+
T Consensus 233 ekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~a----dri~vl~~~ 304 (607)
T 3bk7_A 233 ELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLS----DVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----SEEEEEESC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhC----CEEEEECCC
Confidence 79999999999999999999999999999986 3345899999999999999999 999999754
No 99
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.90 E-value=4.9e-10 Score=123.61 Aligned_cols=86 Identities=19% Similarity=0.271 Sum_probs=68.0
Q ss_pred eeeecc-cccCC----CCc-ceEEeec-c-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 7 LHIMGI-RNFPA----DKN-RVVRFQR-P-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~----~~~-~~i~f~~-~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
|+++|+ ++|++ ..+ .+++|++ + +++|+||||||||||+++| +|.. |.+ |.|.++|..+... ..
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l----~Gl~-p~~--G~I~~~g~~~~~~--~~ 72 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAI----SGLL-PYS--GNIFINGMEVRKI--RN 72 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHH----TTSS-CCE--EEEEETTEEGGGC--SC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHH----hCCC-CCC--cEEEECCEECcch--HH
Confidence 678888 58865 445 7777776 4 9999999999999999999 9999 988 9999988665221 11
Q ss_pred hhcCcc-cc-ccCCCCCCccHHHHHHhh
Q psy9513 79 ASSGKN-FV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 79 ~~~~~~-~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+..++ |+ |++.+ ..++..++.+.
T Consensus 73 -~~~i~~~v~Q~~~l--~~tv~enl~~~ 97 (263)
T 2pjz_A 73 -YIRYSTNLPEAYEI--GVTVNDIVYLY 97 (263)
T ss_dssp -CTTEEECCGGGSCT--TSBHHHHHHHH
T ss_pred -hhheEEEeCCCCcc--CCcHHHHHHHh
Confidence 45688 99 98877 77888888764
No 100
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.4e-09 Score=134.20 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=59.4
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCCCc
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKG 1313 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~ 1313 (1491)
++||++||+||+.+|++|+|||||++||+... ....|.|||+||||++++..+| |++++|..++..
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~----drv~vl~~~~~~ 300 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLS----DFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHC----SEEEEEESCTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----CEEEEEeCCccc
Confidence 79999999999999999999999999999876 3455889999999999999999 999999766443
No 101
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.89 E-value=2.2e-09 Score=137.08 Aligned_cols=90 Identities=27% Similarity=0.408 Sum_probs=73.5
Q ss_pred ceEEEEccch-hhhhhhhhHHHHhH---------------------------HHH---hhhHHHHHHHhhcCCCeeEEcC
Q psy9513 1217 FQLIVITHDE-EFIENLTAIDRAYV---------------------------VRI---VRDHKALAETFSRNCGIFALDE 1265 (1491)
Q Consensus 1217 ~~l~~i~~~~-~~~~~L~~~~~~~~---------------------------~~l---~~~~~~~a~~~~~~~~~l~lDE 1265 (1491)
..++|++|++ .+++.+++.+++.+ ..+ ++||++||+||+.+|++|||||
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDE 574 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDE 574 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEES
T ss_pred eeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 4578999875 56666666554421 011 7999999999999999999999
Q ss_pred CCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1266 PTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1266 p~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
||+|||+.+. ....|.|+|+||||++++..+| |+++.|.+|
T Consensus 575 PTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~a----drii~L~~G 621 (986)
T 2iw3_A 575 PTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVC----EYIINYEGL 621 (986)
T ss_dssp TTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHC----SEEEEEETT
T ss_pred CccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 9999999988 2336899999999999999999 999999876
No 102
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.86 E-value=8.4e-07 Score=109.31 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhcCC--CeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1245 RDHKALAETFSRNC--GIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~--~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+||++||++|+.+| ++|||||||+|||+.+. ....|.|||+||||++++. +| |++++|.++
T Consensus 403 ~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~----d~~~~~~~~ 473 (517)
T 4ad8_A 403 LSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RA----HHHYKVEKQ 473 (517)
T ss_dssp HHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HS----SEEEEEECC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hC----CEEEEEecc
Confidence 45679999999999 99999999999999887 1123899999999999876 58 999999766
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.86 E-value=2e-09 Score=131.46 Aligned_cols=63 Identities=24% Similarity=0.378 Sum_probs=57.3
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecCC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
++||++||+||+.+|++|+|||||++||+... .. .|.|||+||||++++..+| |+++++..+.
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~-~g~tii~vsHdl~~~~~~~----d~i~vl~~~~ 214 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL-KNKYVIVVDHDLIVLDYLT----DLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC-TTSEEEEECSCHHHHHHHC----SEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh-CCCEEEEEEeChHHHHhhC----CEEEEecCCc
Confidence 79999999999999999999999999999876 22 3899999999999999999 9999997653
No 104
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.86 E-value=1.9e-09 Score=134.97 Aligned_cols=93 Identities=20% Similarity=0.306 Sum_probs=77.3
Q ss_pred ceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ .+|++ ..+ .+++|+++ +++|+||||||||||+++| .|.++|.+ |.|.++|.++.......
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l----~g~~~p~~--G~i~~~g~~~~~~~~~~ 414 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDE--GHILMDGHDLREYTLAS 414 (582)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHH----TTTTCCSE--EEEEETTEETTTBCHHH
T ss_pred cEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHH----hhccCCCC--CeEEECCEEccccCHHH
Confidence 4889999 58874 445 88999876 9999999999999999999 99999998 99999998775434445
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++ .++..++.+..
T Consensus 415 ~~~~i~~v~Q~~~l~~-~tv~eni~~~~ 441 (582)
T 3b60_A 415 LRNQVALVSQNVHLFN-DTVANNIAYAR 441 (582)
T ss_dssp HHHTEEEECSSCCCCS-SBHHHHHHTTT
T ss_pred HHhhCeEEccCCcCCC-CCHHHHHhccC
Confidence 56789999 9998876 49999998753
No 105
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.85 E-value=1.8e-09 Score=135.16 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=76.4
Q ss_pred ceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ .+|++ ..+ .+++|+++ +++|+||||||||||+++| .|.++|.+ |.|.++|.++.......
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l----~g~~~p~~--G~i~~~g~~~~~~~~~~ 414 (582)
T 3b5x_A 341 EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDS--GSICLDGHDVRDYKLTN 414 (582)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHH----hcCCCCCC--CEEEECCEEhhhCCHHH
Confidence 4889999 58974 345 88888876 9999999999999999999 99999998 99999997774433445
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++ .++..++.+..
T Consensus 415 ~~~~i~~v~Q~~~l~~-~tv~eni~~~~ 441 (582)
T 3b5x_A 415 LRRHFALVSQNVHLFN-DTIANNIAYAA 441 (582)
T ss_pred HhcCeEEEcCCCcccc-ccHHHHHhccC
Confidence 56789999 9988776 48999988743
No 106
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.84 E-value=1.6e-09 Score=121.19 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=55.4
Q ss_pred ceeeecccccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 6 QLHIMGIRNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 6 ~l~i~~~~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
.|.++|+. |+...+ .+|+|+++ +++|+||||||||||+++| +|.++|.+ |.|+++|
T Consensus 40 ~l~~~~l~-~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l----~Gl~~p~~--G~I~~~g------------- 99 (290)
T 2bbs_A 40 SLSFSNFS-LLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMI----MGELEPSE--GKIKHSG------------- 99 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHH----TTSSCEEE--EEEECCS-------------
T ss_pred eEEEEEEE-EcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCCCCCC--cEEEECC-------------
Confidence 36777773 223345 88999876 9999999999999999999 99999998 9998876
Q ss_pred Ccccc-ccCCCCCCccHHHHHH
Q psy9513 82 GKNFV-HDPRIGKKDETHAIVK 102 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v~ 102 (1491)
.++|+ |++.+++ .++..++.
T Consensus 100 ~i~~v~Q~~~l~~-~tv~enl~ 120 (290)
T 2bbs_A 100 RISFCSQNSWIMP-GTIKENII 120 (290)
T ss_dssp CEEEECSSCCCCS-SBHHHHHH
T ss_pred EEEEEeCCCccCc-ccHHHHhh
Confidence 25788 8877766 48888876
No 107
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.84 E-value=1.2e-09 Score=148.37 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=78.3
Q ss_pred ceeeecc-cccCCC---Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGI-RNFPAD---KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~---~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|+++|+ .+|++. .+ .+|+|+++ +++||||||||||||+++| .|.++|.+ |.|.++|.++......
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll----~g~~~~~~--G~i~i~g~~i~~~~~~ 460 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM----QRLYDPLD--GMVSIDGQDIRTINVR 460 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHT----TTSSCCSE--EEEEETTEEGGGSCHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHH----hCCCCCCC--eEEEECCEEHHhCCHH
Confidence 4889999 588642 35 89999986 9999999999999999999 99999998 9999999877554455
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhcc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQCT 106 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~~ 106 (1491)
..+..++|+ |++.++.. ++..++.+...
T Consensus 461 ~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~ 489 (1284)
T 3g5u_A 461 YLREIIGVVSQEPVLFAT-TIAENIRYGRE 489 (1284)
T ss_dssp HHHHHEEEECSSCCCCSS-CHHHHHHHHCS
T ss_pred HHHhheEEEcCCCccCCc-cHHHHHhcCCC
Confidence 566779999 99987754 99999987643
No 108
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.83 E-value=2.4e-09 Score=134.37 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=76.8
Q ss_pred eeeecc-cccCCC---Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 7 LHIMGI-RNFPAD---KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 7 l~i~~~-~~~~~~---~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
|+++|+ .+|++. .+ .+++|+++ +++|+||||||||||+++| +|.++|.+ |.|.++|.++.......
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l----~g~~~p~~--G~i~~~g~~i~~~~~~~ 415 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL----LRLYDPAS--GTISLDGHDIRQLNPVW 415 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHH----TTSSCCSE--EEEEETTEETTTBCHHH
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHH----hcCcCCCC--cEEEECCEEhhhCCHHH
Confidence 889999 588643 34 88999876 9999999999999999999 99999998 99999998775434445
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++ .++..++.+..
T Consensus 416 ~~~~i~~v~Q~~~l~~-~tv~eni~~~~ 442 (595)
T 2yl4_A 416 LRSKIGTVSQEPILFS-CSIAENIAYGA 442 (595)
T ss_dssp HHHSEEEECSSCCCCS-SBHHHHHHTTS
T ss_pred HHhceEEEccCCcccC-CCHHHHHhhcC
Confidence 56789999 9998875 59999998754
No 109
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.83 E-value=1.9e-09 Score=134.60 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=77.3
Q ss_pred ceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ .+|++ ..+ .+++|+++ +++|+||||||||||+++| .|.++|.+ |.|.++|.++.......
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l----~g~~~p~~--G~i~~~g~~~~~~~~~~ 412 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLI----PRFYDVTS--GQILIDGHNIKDFLTGS 412 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTT----TTSSCCSE--EEEEETTEEGGGSCHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHH----hcCCCCCC--cEEEECCEEhhhCCHHH
Confidence 4889999 58864 234 88999886 9999999999999999999 99999998 99999998775444455
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++. ++..++.+..
T Consensus 413 ~r~~i~~v~Q~~~l~~~-tv~eni~~~~ 439 (578)
T 4a82_A 413 LRNQIGLVQQDNILFSD-TVKENILLGR 439 (578)
T ss_dssp HHHTEEEECSSCCCCSS-BHHHHHGGGC
T ss_pred HhhheEEEeCCCccCcc-cHHHHHhcCC
Confidence 67789999 99887765 9999988753
No 110
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.81 E-value=1.5e-09 Score=147.78 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=78.0
Q ss_pred ceeeeccc-ccCC---CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH
Q psy9513 6 QLHIMGIR-NFPA---DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA 77 (1491)
Q Consensus 6 ~l~i~~~~-~~~~---~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~ 77 (1491)
.|+++|+. +|++ ... .+|+|+++ +++||||+|||||||+++| .|.++|.+ |.|.++|.++...+..
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll----~~~~~~~~--G~I~idG~~i~~~~~~ 488 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLL----LRYYDVLK--GKITIDGVDVRDINLE 488 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHH----TTSSCCSE--EEEEETTEETTTSCHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHh----cccccccc--CcccCCCccchhccHH
Confidence 48889984 7853 234 88999987 9999999999999999999 99999998 9999999888666666
Q ss_pred HhhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 78 SASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
..+..++|+ |+|.++ ..+++.+|.+.-
T Consensus 489 ~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 489 FLRKNVAVVSQEPALF-NCTIEENISLGK 516 (1321)
T ss_dssp HHHHHEEEECSSCCCC-SEEHHHHHHTTC
T ss_pred HHhhcccccCCcceee-CCchhHHHhhhc
Confidence 777889999 888765 458999998753
No 111
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.81 E-value=2.5e-09 Score=133.96 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=76.7
Q ss_pred ceeeecc-cccCCC-Cc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGI-RNFPAD-KN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~-~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.|+++|+ .+|++. .+ .+++|+++ +++|+||||||||||+++| .|.++|.+ |.|.++|.++........
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l----~g~~~p~~--G~i~~~g~~i~~~~~~~~ 427 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL----MRFYDVDR--GQILVDGIDIRKIKRSSL 427 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHH----TTSSCCSE--EEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHH----hcCcCCCC--eEEEECCEEhhhCCHHHH
Confidence 4889999 588643 34 88999886 9999999999999999999 99999998 999999987754444556
Q ss_pred hcCcccc-ccCCCCCCccHHHHHHhh
Q psy9513 80 SSGKNFV-HDPRIGKKDETHAIVKLQ 104 (1491)
Q Consensus 80 ~~~~~~~-q~~~~~~~~~~~~~v~~~ 104 (1491)
+..++|+ |++.+++ .++..++.+.
T Consensus 428 r~~i~~v~Q~~~lf~-~tv~eni~~~ 452 (598)
T 3qf4_B 428 RSSIGIVLQDTILFS-TTVKENLKYG 452 (598)
T ss_dssp HHHEEEECTTCCCCS-SBHHHHHHSS
T ss_pred HhceEEEeCCCcccc-ccHHHHHhcC
Confidence 6789999 9988775 5899998764
No 112
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.80 E-value=2.5e-09 Score=133.46 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=77.0
Q ss_pred ceeeecc-cccCC--CCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHH
Q psy9513 6 QLHIMGI-RNFPA--DKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEAS 78 (1491)
Q Consensus 6 ~l~i~~~-~~~~~--~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (1491)
.|+++|+ .+|++ ..+ .+++|+++ +++|+||||||||||+++| .|.++|.+ |.|.++|.++.......
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l----~g~~~~~~--G~i~i~g~~i~~~~~~~ 414 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLI----PRLIDPER--GRVEVDELDVRTVKLKD 414 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTT----TTSSCCSE--EEEEESSSBGGGBCHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHH----hCCccCCC--cEEEECCEEcccCCHHH
Confidence 4889999 58853 345 89999986 9999999999999999999 99999998 99999998885544455
Q ss_pred hhcCcccc-ccCCCCCCccHHHHHHhhc
Q psy9513 79 ASSGKNFV-HDPRIGKKDETHAIVKLQC 105 (1491)
Q Consensus 79 ~~~~~~~~-q~~~~~~~~~~~~~v~~~~ 105 (1491)
.+..++|+ |++.+++ .++..++.+..
T Consensus 415 ~r~~i~~v~Q~~~lf~-~tv~eni~~~~ 441 (587)
T 3qf4_A 415 LRGHISAVPQETVLFS-GTIKENLKWGR 441 (587)
T ss_dssp HHHHEEEECSSCCCCS-EEHHHHHTTTC
T ss_pred HHhheEEECCCCcCcC-ccHHHHHhccC
Confidence 66779999 9988775 48999987643
No 113
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.76 E-value=7.1e-09 Score=121.11 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=55.5
Q ss_pred HhhhHHHHHHHhh------cCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1243 IVRDHKALAETFS------RNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1243 l~~~~~~~a~~~~------~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
-++||++||+||+ .+|++|+|||||+|||+.+. ....|.|||+||||+++ ...| |++++|
T Consensus 283 Ge~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~----d~~~~l 357 (365)
T 3qf7_A 283 GERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAF----DRKLRI 357 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTC----SCEEEE
T ss_pred HHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhC----CEEEEE
Confidence 3789999999999 69999999999999999988 33468999999999998 5567 999999
Q ss_pred ecC
Q psy9513 1308 VRD 1310 (1491)
Q Consensus 1308 ~~~ 1310 (1491)
.+|
T Consensus 358 ~~G 360 (365)
T 3qf7_A 358 TGG 360 (365)
T ss_dssp ETT
T ss_pred ECC
Confidence 877
No 114
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.73 E-value=4.6e-09 Score=142.93 Aligned_cols=87 Identities=22% Similarity=0.335 Sum_probs=72.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhHHH-------H----------------------------------hhhHHHHHHHhhc
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYVVR-------I----------------------------------VRDHKALAETFSR 1256 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~~~-------l----------------------------------~~~~~~~a~~~~~ 1256 (1491)
+++||||+|.++.+ |..+|+.+.. + +|||++||||++.
T Consensus 493 ~i~~v~Q~~~Lf~~-TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 493 NVAVVSQEPALFNC-TIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HEEEECSSCCCCSE-EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred cccccCCcceeeCC-chhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 69999999988766 6777653210 0 6999999999999
Q ss_pred CCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1257 NCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1257 ~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++|+|||||++||+.+. ....|.|+|+|||++..+.. | |++++|++|
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~-a----D~Iivl~~G 628 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRN-A----DLIISCKNG 628 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTT-C----SEEEEEETT
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHh-C----CEEEEeeCC
Confidence 9999999999999999876 23458999999999987753 5 999999988
No 115
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.70 E-value=8.5e-09 Score=131.45 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=53.2
Q ss_pred hhhHHHHHHHhhcCC---CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRNC---GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~---~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++|||||+.+| ++|+|||||+|||+.+. ....|.|||+||||++++. .| |++++|.
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~-~~----d~i~~l~ 619 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TA----DYIIDLG 619 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TC----SEEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH-hC----CEEEEec
Confidence 899999999999887 59999999999999987 3445899999999999874 58 9999994
No 116
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.70 E-value=6.3e-05 Score=85.01 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhhhHH
Q psy9513 245 KQLIYNNTQKRDQSF-EELHNIEESMKPI 272 (1491)
Q Consensus 245 ~~~~l~~~~~~~~~~-~~~~~l~~~l~~l 272 (1491)
+.+++..++..+..+ ..+..+...+..+
T Consensus 4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l 32 (284)
T 1c1g_A 4 IKKKMQMLKLDKENALDRADEAEADKKAA 32 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 4444444433333
No 117
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.68 E-value=1.6e-08 Score=128.93 Aligned_cols=60 Identities=25% Similarity=0.408 Sum_probs=54.1
Q ss_pred hhhHHHHHHHhhcCCC--eeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRNCG--IFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~--~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++|||||+.+|+ +|||||||+|||+.+. ....|.|||+||||++++. .| |+++.|.
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~----d~ii~l~ 277 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AA----DYLIDIG 277 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HC----SEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hC----CEEEEec
Confidence 7999999999999988 9999999999999988 3456899999999999876 48 9999994
No 118
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.66 E-value=1.1e-08 Score=130.84 Aligned_cols=63 Identities=30% Similarity=0.316 Sum_probs=57.9
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|++|||||||+|||+.+. ....+.+||+||||.+++..+| |+++.|.+|
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~----DrVivL~~G 974 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLT----EEVWAVKDG 974 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTC----CEEECCBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhC----CEEEEEECC
Confidence 79999999999999999999999999999988 3344779999999999999999 999999876
No 119
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.65 E-value=2e-07 Score=108.08 Aligned_cols=57 Identities=32% Similarity=0.457 Sum_probs=48.6
Q ss_pred HHHHHhhcCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1249 ALAETFSRNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1249 ~~a~~~~~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++|++|+.+|++|+|||||+|||+... ....|.|||+||||.++ ..+| |+++.|...
T Consensus 264 ~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~----d~~~~l~~~ 329 (339)
T 3qkt_A 264 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAA----DHVIRISLE 329 (339)
T ss_dssp HHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGC----SEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhC----CEEEEEEec
Confidence 999999999999999999999999886 23457799999999664 5677 999988754
No 120
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.62 E-value=4.7e-08 Score=117.85 Aligned_cols=48 Identities=21% Similarity=0.403 Sum_probs=37.6
Q ss_pred cccceeeecccccCCCCcceEEeeccceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 3 LLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 3 ~~~~l~i~~~~~~~~~~~~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
.+..|++.||+.|. ..+++|..++++|+|||||||||||+||.++++|
T Consensus 39 ~l~~L~i~nf~~l~---~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 39 RLSRLEIRNLATIT---QLELELGGGFCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp CCCEEEEEEETTEE---EEEEECCSSEEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred Eeeeehhcccccee---eEEEecCCCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45678899887663 2345555569999999999999999999777743
No 121
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.56 E-value=3.8e-07 Score=109.86 Aligned_cols=59 Identities=15% Similarity=0.082 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhcCC--CeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1245 RDHKALAETFSRNC--GIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~--~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++|++||++|+.+| ++|||||||+|||+.+. ....|.|||+||||++++. +| |++++|.
T Consensus 301 ~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~-~~----d~i~~l~ 369 (415)
T 4aby_A 301 LSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RA----HHHYKVE 369 (415)
T ss_dssp HHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT-TC----SEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh-hc----CeEEEEE
Confidence 45669999999999 99999999999999988 1124899999999998864 68 9999994
No 122
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.53 E-value=9e-08 Score=128.98 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|.|.+|||||.-.+.|
T Consensus 171 ~i~isGeSGaGKTe~~k~~ 189 (1184)
T 1i84_S 171 SILCTGESGAGKTENTKKV 189 (1184)
T ss_dssp EEECCCSTTSSTTHHHHHH
T ss_pred EEEEecCCCCCccHHHHHH
Confidence 7899999999999887766
No 123
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.52 E-value=1.9e-07 Score=125.92 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHH
Q psy9513 241 ADSKKQLIYNNTQKRDQSF-EELHNIEESMKPINEKLVQL 279 (1491)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~-~~~~~l~~~l~~l~~~~~~~ 279 (1491)
++..+...+..++.++..+ ..+.+++.++.+++.+...+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555 55555555555554444333
No 124
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.49 E-value=9.3e-08 Score=122.42 Aligned_cols=62 Identities=29% Similarity=0.414 Sum_probs=54.5
Q ss_pred hhhHHHHHHHhhcCCC--eeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1244 VRDHKALAETFSRNCG--IFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~--~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
++||++||+||+.+|+ +|+|||||+|||+... ....|.|||+||||++++.. | |+++.|..|
T Consensus 469 e~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~-a----D~ii~lgpg 541 (916)
T 3pih_A 469 ESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRN-A----DHIIDIGPG 541 (916)
T ss_dssp HHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHT-C----SEEEEEESS
T ss_pred HHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-C----CEEEEEcCC
Confidence 7999999999999877 9999999999999887 34568999999999998864 8 999999543
No 125
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.49 E-value=7.9e-08 Score=123.03 Aligned_cols=61 Identities=23% Similarity=0.390 Sum_probs=53.7
Q ss_pred hhhHHHHHHHhhcCC---CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNC---GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~---~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||++|+.+| ++|||||||+|||+... ....|.|||+||||++++.. | |+++.|..
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~-A----DrIivLgp 882 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN-A----DHIIDLGP 882 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT-C----SEEEEEES
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh-C----CEEEEecC
Confidence 799999999999875 79999999999999987 33568999999999998764 7 99999953
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.49 E-value=7.5e-09 Score=104.48 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=56.8
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhc
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASS 81 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (1491)
+...++ ++|++..+ .+++|+++ +++|+||||||||||+++| +|.+ |.+ |.|.+.|..+..... . .
T Consensus 8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l----~g~l-~~~--G~V~~~g~~i~~~~~--~-~ 77 (158)
T 1htw_A 8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGM----LQGI-GHQ--GNVKSPTYTLVEEYN--I-A 77 (158)
T ss_dssp ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHH----HHHT-TCC--SCCCCCTTTCEEEEE--E-T
T ss_pred cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHH----HHhC-CCC--CeEEECCEeeeeecc--C-C
Confidence 444455 57875444 67788765 9999999999999999999 8988 776 999888776632110 0 1
Q ss_pred Ccccc-ccCCCCCCccHHHHH
Q psy9513 82 GKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 82 ~~~~~-q~~~~~~~~~~~~~v 101 (1491)
.++ |++.+. ..++..++
T Consensus 78 --~~~~q~~~l~-~ltv~e~l 95 (158)
T 1htw_A 78 --GKMIYHFDLY-RLADPEEL 95 (158)
T ss_dssp --TEEEEEEECT-TCSCTTHH
T ss_pred --Ccceeccccc-cCCcHHHH
Confidence 245 666555 56665555
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.46 E-value=2.7e-08 Score=102.95 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=47.9
Q ss_pred HhhhHHHHHHHhhcCCCeeEEcCCCCCCChH----------------hH---------HhhcCceEEEEccCHHHHHHHh
Q psy9513 1243 IVRDHKALAETFSRNCGIFALDEPTTNLDIK----------------NA---------SDQKNFQLIVITHDEEFIENLT 1297 (1491)
Q Consensus 1243 l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~----------------~~---------~~~~~~~~i~~thd~~~~~~~~ 1297 (1491)
.++||++||+|++.+|++|+|||||++||+. .. ....|+|+|+||||++++..++
T Consensus 87 g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 87 ARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred HHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 3699999999999999999999999999988 22 3345999999999999988754
No 128
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.43 E-value=1.2e-07 Score=120.25 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=54.5
Q ss_pred hhhHHHHHHHhhcC---CCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRN---CGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~---~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++||++|+.+ |++|||||||+|||+... ....|.|||+||||++++ .+| |+++.|.
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~a----Drii~L~ 806 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AAS----DWVLDIG 806 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTC----SEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhC----CEEEEEC
Confidence 79999999999996 799999999999999887 345689999999999999 678 9999995
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=98.43 E-value=6e-06 Score=97.00 Aligned_cols=63 Identities=30% Similarity=0.483 Sum_probs=50.9
Q ss_pred HHHHHhhcC-CCeeEEcCCCCCCChHhH------Hh--hcCceEEEEccCHHHHHHHhccccceEEEEecCCCcceee
Q psy9513 1249 ALAETFSRN-CGIFALDEPTTNLDIKNA------SD--QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDI 1317 (1491)
Q Consensus 1249 ~~a~~~~~~-~~~l~lDEp~~~lD~~~~------~~--~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~~~~~~~i 1317 (1491)
++|++|+.+ |++|+|||||+|||+.+. .. ..+.|||+|||+.+ +..+| |+++.+.+.+. .|.+
T Consensus 296 a~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~----d~~~~l~k~~~-~s~v 367 (371)
T 3auy_A 296 AIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVA----DVIINVKKDGN-VSKV 367 (371)
T ss_dssp HHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGC----SEEEEEEESSS-CEEE
T ss_pred HHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhC----CEEEEEEecCC-eEEE
Confidence 999999999 999999999999999987 11 23468999999987 45677 99999986643 3444
No 130
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.43 E-value=1.5e-07 Score=119.09 Aligned_cols=60 Identities=25% Similarity=0.450 Sum_probs=53.5
Q ss_pred hhhHHHHHHHhhcCC---CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRNC---GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~---~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++||++|+.+| ++|||||||+|||+... ....|.|||+||||++++. +| |+++.|.
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~-~a----DrIivL~ 921 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK-TA----DYIIDLG 921 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TC----SEEEEEC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH-hC----CEEEEEc
Confidence 799999999999865 99999999999999987 3456899999999999874 68 9999995
No 131
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.40 E-value=2e-07 Score=118.51 Aligned_cols=61 Identities=25% Similarity=0.431 Sum_probs=53.9
Q ss_pred hhhHHHHHHHhhcCC---CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNC---GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~---~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||++|+.+| ++|||||||+|||+... ....|.|||+||||++++ .+| |+++.|..
T Consensus 868 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~a----DrIivL~p 940 (993)
T 2ygr_A 868 EAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI-KTS----DWIIDLGP 940 (993)
T ss_dssp HHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTC----SEEEEEES
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhC----CEEEEECC
Confidence 899999999999865 99999999999999987 335689999999999997 468 99999953
No 132
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.37 E-value=3.3e-07 Score=116.62 Aligned_cols=60 Identities=28% Similarity=0.418 Sum_probs=54.0
Q ss_pred hhhHHHHHHHhhcC--CCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRN--CGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~--~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++||++|+.+ |.+|||||||+|||+... +...|.|||+|+||++++. .| |+++.|.
T Consensus 526 EkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~A----DrIi~Lg 596 (993)
T 2ygr_A 526 EAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE-HA----DWIVDIG 596 (993)
T ss_dssp HHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHH-TC----SEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHH-hC----CEEEEec
Confidence 79999999999999 589999999999999887 4567999999999999875 68 9999995
No 133
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.37 E-value=3.2e-07 Score=116.24 Aligned_cols=60 Identities=25% Similarity=0.396 Sum_probs=53.8
Q ss_pred hhhHHHHHHHhhcCC--CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1244 VRDHKALAETFSRNC--GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~--~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
++||++||++|+.+| .+|||||||+|||+... +...|.|||+|+||++++. .| |+++.|.
T Consensus 509 EkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~A----DrIi~Lg 579 (972)
T 2r6f_A 509 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AA----DYLIDIG 579 (972)
T ss_dssp HHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SC----SEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hC----CEEEEeC
Confidence 799999999999985 89999999999999887 4456999999999999875 68 9999995
No 134
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.29 E-value=5.6e-07 Score=114.26 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=54.1
Q ss_pred hhhHHHHHHHhhcCC--CeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1244 VRDHKALAETFSRNC--GIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~--~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
++||++||++|+.+| .+++|||||++||+..+ +...|.|||+||||++++. .| |+++.|..
T Consensus 384 e~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~-~a----D~ii~lgp 455 (842)
T 2vf7_A 384 ELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIR-RA----DWLVDVGP 455 (842)
T ss_dssp HHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHT-TC----SEEEEECS
T ss_pred HHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHH-hC----CEEEEeCC
Confidence 799999999999999 49999999999999887 4556999999999999765 67 99999953
No 135
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.24 E-value=1e-06 Score=101.33 Aligned_cols=61 Identities=31% Similarity=0.421 Sum_probs=49.1
Q ss_pred hhhHHHHHHHhh----cCCCeeEEcCCCCCCChHhH--------HhhcCceEEEEccCHHHHHHHhccccceE--EEEec
Q psy9513 1244 VRDHKALAETFS----RNCGIFALDEPTTNLDIKNA--------SDQKNFQLIVITHDEEFIENLTAIDRAYV--VRIVR 1309 (1491)
Q Consensus 1244 ~~~~~~~a~~~~----~~~~~l~lDEp~~~lD~~~~--------~~~~~~~~i~~thd~~~~~~~~~~~~~~~--~~l~~ 1309 (1491)
++|+++||++|+ .+|++|+|||||++||+... ....+.|+|+|||+.+ +..+| |++ +.+.+
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~----d~~~~v~~~~ 298 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAA----DLLHGVTMVN 298 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGC----SEEEEEEESS
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhC----ceEEEEEEeC
Confidence 799999999997 57899999999999999987 1234789999999965 45577 876 44543
No 136
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.20 E-value=1.6e-06 Score=89.70 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=49.0
Q ss_pred HHHHhhhHHHHHHH-----hhcCCCeeEEcC--CCCCCChHhH------HhhcCceEEEEc---cCHHHHHHHh
Q psy9513 1240 VVRIVRDHKALAET-----FSRNCGIFALDE--PTTNLDIKNA------SDQKNFQLIVIT---HDEEFIENLT 1297 (1491)
Q Consensus 1240 ~~~l~~~~~~~a~~-----~~~~~~~l~lDE--p~~~lD~~~~------~~~~~~~~i~~t---hd~~~~~~~~ 1297 (1491)
+...++||++||+| ++.+|++|+||| ||++||+... ....+.++|++| ||.+++..+|
T Consensus 77 lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~ 150 (178)
T 1ye8_A 77 VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIR 150 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHH
T ss_pred cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHH
Confidence 44558999999996 999999999999 9999999876 333466688887 5999999998
No 137
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.20 E-value=5.1e-07 Score=107.16 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=41.6
Q ss_pred ceEEeecc--ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC
Q psy9513 21 RVVRFQRP--LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG 72 (1491)
Q Consensus 21 ~~i~f~~~--~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~ 72 (1491)
.+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.++|..+.
T Consensus 21 ~~vsl~i~~e~~~liG~nGsGKSTLl~~l----~Gl~~p~~--G~I~~~g~~~~ 68 (483)
T 3euj_A 21 FARTFDFDELVTTLSGGNGAGKSTTMAGF----VTALIPDL--TLLNFRNTTEA 68 (483)
T ss_dssp EEEEEECCSSEEEEECCTTSSHHHHHHHH----HHHHCCCT--TTCCCCCTTSC
T ss_pred cceEEEEccceEEEECCCCCcHHHHHHHH----hcCCCCCC--CEEEECCEEcc
Confidence 68888876 9999999999999999999 99999998 99999987763
No 138
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.19 E-value=3.5e-07 Score=103.16 Aligned_cols=78 Identities=18% Similarity=0.186 Sum_probs=56.8
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH-----H-HhhcCcccc-ccCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE-----A-SASSGKNFV-HDPR 90 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~-----~-~~~~~~~~~-q~~~ 90 (1491)
..++|+++ +++|+|||||||||++.+| +|.++|.+ |.|.+.|.++.+... . ..+.+++|+ |.+.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~L----ag~l~~~~--g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKL----AHRLKNEG--TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHH----HHHHHHTT--CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHH----HHHHHHcC--CeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 45677543 9999999999999999999 88888887 999999887754210 1 123578888 8776
Q ss_pred -CCCCccHHHHHHhh
Q psy9513 91 -IGKKDETHAIVKLQ 104 (1491)
Q Consensus 91 -~~~~~~~~~~v~~~ 104 (1491)
..+..++..++.+.
T Consensus 165 ~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 165 KAKAATVLSKAVKRG 179 (302)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 66666777777654
No 139
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.17 E-value=1.1e-07 Score=105.64 Aligned_cols=37 Identities=19% Similarity=0.446 Sum_probs=23.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
.++|+||||||||||+++| +|..+|.+ |.+.++|..+
T Consensus 4 ~v~lvG~nGaGKSTLln~L----~g~~~~~~--G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTL----FKSQVSRK--ASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHH----HHHHC--------------C
T ss_pred EEEEECCCCCCHHHHHHHH----hCCCCCCC--CccccCCccc
Confidence 5789999999999999999 99999998 9998887655
No 140
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.17 E-value=2.2e-06 Score=103.05 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=59.5
Q ss_pred HHhhhHHHHHHHhh----cCCCeeEEcCCCCCCChHhH---------HhhcCceEEEEccCHHHHHHHhccccceEEEEe
Q psy9513 1242 RIVRDHKALAETFS----RNCGIFALDEPTTNLDIKNA---------SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1242 ~l~~~~~~~a~~~~----~~~~~l~lDEp~~~lD~~~~---------~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~ 1308 (1491)
.-++++++||++|+ .+|++|+|||||++||+.+. ....+.|+|+|||+..++ ..| |+++.|.
T Consensus 336 ~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~----d~~~~~~ 410 (430)
T 1w1w_A 336 GGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKS----DALVGVY 410 (430)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTC----SEEEEEE
T ss_pred cchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhC----CEEEEEE
Confidence 34789999999999 57999999999999999988 122368999999997654 467 9999998
Q ss_pred cC-CCcceeeeecc
Q psy9513 1309 RD-HKGLSDIHLRS 1321 (1491)
Q Consensus 1309 ~~-~~~~~~i~~~~ 1321 (1491)
.. ..++|.+...+
T Consensus 411 ~~~~~~~s~~~~~~ 424 (430)
T 1w1w_A 411 RQQQENSSKIITLD 424 (430)
T ss_dssp EETTTTEEEEEEEE
T ss_pred EeCCCCeeEEEEEe
Confidence 75 45677665543
No 141
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.14 E-value=5.9e-07 Score=105.79 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=57.9
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc-----HH-HhhcCcccc-ccCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD-----EA-SASSGKNFV-HDPR 90 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~-----~~-~~~~~~~~~-q~~~ 90 (1491)
.+++|+++ +++|+|||||||||++.+| +|.+++.+ |.|.+.|.+..+.. .. ..+.+++|+ |...
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~L----Agll~~~~--G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKL----ARQFEQQG--KSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHH----HHHHHHTT--CCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHH----HHHhhhcC--CeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 56777654 9999999999999999999 88888877 99999876664321 01 135678888 8766
Q ss_pred CCCCccHHHHHHhhc
Q psy9513 91 IGKKDETHAIVKLQC 105 (1491)
Q Consensus 91 ~~~~~~~~~~v~~~~ 105 (1491)
+.+..++..+|.+..
T Consensus 358 ~~p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 358 ADSASVIFDAIQAAK 372 (503)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 655566777776643
No 142
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=98.13 E-value=9.4e-07 Score=101.74 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=64.4
Q ss_pred EEEEccchhhhhhhhhHHHH-hHHHHhhhHHHHHHHhh---------cCCCeeEEcCCCCCCChHhH------HhhcCce
Q psy9513 1219 LIVITHDEEFIENLTAIDRA-YVVRIVRDHKALAETFS---------RNCGIFALDEPTTNLDIKNA------SDQKNFQ 1282 (1491)
Q Consensus 1219 l~~i~~~~~~~~~L~~~~~~-~~~~l~~~~~~~a~~~~---------~~~~~l~lDEp~~~lD~~~~------~~~~~~~ 1282 (1491)
-.+=||-..|...++..... +...-++|+++||++|+ .+|++|+|||||++||+... ....+.+
T Consensus 244 T~~GPHRdDl~~~~~~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt 323 (359)
T 2o5v_A 244 TVTGPHRDDLLLTLGDFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQA 323 (359)
T ss_dssp CCCSGGGCEEEEEETTEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEE
T ss_pred CCCCCcccCCeeccCCcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcE
Confidence 34457777777666654433 44556999999999999 89999999999999999887 2222468
Q ss_pred EEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1283 LIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
+|++||+ +. +| ++++.+..|
T Consensus 324 ~i~~th~-~~---~~----~~i~~l~~G 343 (359)
T 2o5v_A 324 IVTGTEL-AP---GA----ALTLRAQAG 343 (359)
T ss_dssp EEEESSC-CT---TC----SEEEEEETT
T ss_pred EEEEEec-cc---cC----CEEEEEECC
Confidence 8888995 33 67 999999877
No 143
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.11 E-value=7.1e-07 Score=102.41 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=58.4
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcH----H--HhhcCcccc-ccCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE----A--SASSGKNFV-HDPR 90 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~----~--~~~~~~~~~-q~~~ 90 (1491)
..++|+++ +++|+|||||||||++.+| +|.++|.+ |.|.+.|.++.+... . ..+.+++|+ |.+.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~L----ag~l~~~~--G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~ 221 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKL----AHRLKNEG--TKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 221 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHH----HHHHHHTT--CCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHH----HhhccccC--CEEEEecccccccchhHHHHHHHHhcCeEEEEeccc
Confidence 35666543 9999999999999999999 88888877 999999887744210 1 124578888 8776
Q ss_pred -CCCCccHHHHHHhhc
Q psy9513 91 -IGKKDETHAIVKLQC 105 (1491)
Q Consensus 91 -~~~~~~~~~~v~~~~ 105 (1491)
..+..++..++.+..
T Consensus 222 ~~~p~~tv~e~l~~~~ 237 (359)
T 2og2_A 222 KAKAATVLSKAVKRGK 237 (359)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred ccChhhhHHHHHHHHH
Confidence 666667777776543
No 144
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.06 E-value=3.9e-06 Score=94.67 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=68.6
Q ss_pred eEEEEccchh-hhhhhhhHHHHhHH------------------------HHhhhHHHHHHHhhcCCC--eeEEcCCCCCC
Q psy9513 1218 QLIVITHDEE-FIENLTAIDRAYVV------------------------RIVRDHKALAETFSRNCG--IFALDEPTTNL 1270 (1491)
Q Consensus 1218 ~l~~i~~~~~-~~~~L~~~~~~~~~------------------------~l~~~~~~~a~~~~~~~~--~l~lDEp~~~l 1270 (1491)
+++|++|++. +++.+++.+++.+. .+++||++||++++.+|+ +|+|| ||+||
T Consensus 155 ~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 155 GCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp TCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred CceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 4899999998 88888877776321 225799999999999999 99999 99999
Q ss_pred ChHhH---Hh-hcCceEEEEcc---------CHHHHHHHhccccceEEEEecCCC
Q psy9513 1271 DIKNA---SD-QKNFQLIVITH---------DEEFIENLTAIDRAYVVRIVRDHK 1312 (1491)
Q Consensus 1271 D~~~~---~~-~~~~~~i~~th---------d~~~~~~~~~~~~~~~~~l~~~~~ 1312 (1491)
|+.+. .. ..|.++|++|| .+..+..++ ..+..+..|..
T Consensus 234 D~~~~~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~----~pi~~i~~Ge~ 284 (302)
T 3b9q_A 234 NMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELG----IPVKFIGVGEA 284 (302)
T ss_dssp GGHHHHHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHC----CCEEEEECSSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCCccChheehHHHHC----CCEEEEeCCCC
Confidence 99887 22 45899999999 444454554 67777777743
No 145
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.02 E-value=1.2e-06 Score=94.48 Aligned_cols=41 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
.+|+|+++ +++|+||||||||||+++| .|.+| |.+.+ |..+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L----~g~~p-----G~i~~-g~~~ 57 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKL----LNEFP-----NYFYF-SVSC 57 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHH----HHHST-----TTEEE-CCCE
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHH----HhhCC-----CcEEE-eecc
Confidence 67888775 9999999999999999999 88773 56766 5443
No 146
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.02 E-value=2.2e-06 Score=96.72 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=53.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc--H--H--HhhcCcccc-ccCCCCCCccHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD--E--A--SASSGKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~--~--~--~~~~~~~~~-q~~~~~~~~~~~~~v 101 (1491)
+++|+|||||||||++.+| +|.++|.+ |.+.+.|.++.+.. . . ..+.+++|+ |.+...+..++...|
T Consensus 104 vi~lvG~nGsGKTTll~~L----agll~~~~--g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKL----GRYYQNLG--KKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHHHHTTT--CCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH----HHHHHhcC--CEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999999 88888887 99999988774421 1 1 123567888 877666666666666
Q ss_pred Hhh
Q psy9513 102 KLQ 104 (1491)
Q Consensus 102 ~~~ 104 (1491)
.+.
T Consensus 178 ~~~ 180 (304)
T 1rj9_A 178 QAM 180 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 147
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.01 E-value=6e-07 Score=95.27 Aligned_cols=50 Identities=14% Similarity=0.020 Sum_probs=36.7
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---H--hhcCceEEEEccCHHHHHH
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTNLDIKNA---S--DQKNFQLIVITHDEEFIEN 1295 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---~--~~~~~~~i~~thd~~~~~~ 1295 (1491)
++||++||+||+.+|++|||||||+| -...+ . ...|.+|| ||||++++..
T Consensus 109 q~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 109 EVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred hHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 89999999999999999999999999 33333 1 13478899 9999987654
No 148
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.01 E-value=7.1e-07 Score=101.85 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=60.6
Q ss_pred eeeecc-cccCCCCc-ceEEeec-------------------c---ceEEEccCCCChhhHHHHHHhhhcCCCC--CCCC
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQR-------------------P---LTLIVGENGCGKTTIIECIKFALTNEYP--QGAS 60 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~-------------------~---~~~i~G~NGaGKStl~~~i~~~l~g~~~--~~~~ 60 (1491)
|+++|+ +.|+ .. ..|+|.+ + ++||+||||||||||+++| .|.++ |.+
T Consensus 38 i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L----~~~l~~~~~~- 110 (308)
T 1sq5_A 38 LSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVL----QALLSRWPEH- 110 (308)
T ss_dssp CCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHH----HHHHTTSTTC-
T ss_pred cchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHH----HHHHhhCCCC-
Confidence 677788 5775 34 6666644 2 9999999999999999999 78777 777
Q ss_pred CCceEe---eCCCCCCCcHHHhhcCccccccCCCCCCccHHHHHHhhccccCC
Q psy9513 61 SGKNFV---HDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENN 110 (1491)
Q Consensus 61 ~g~~~~---~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~ 110 (1491)
|.+.+ +|.... . .....++++|..++.+..++...+.+...-..+
T Consensus 111 -G~i~vi~~d~~~~~---~-~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l~~~ 158 (308)
T 1sq5_A 111 -RRVELITTDGFLHP---N-QVLKERGLMKKKGFPESYDMHRLVKFVSDLKSG 158 (308)
T ss_dssp -CCEEEEEGGGGBCC---H-HHHHHHTCTTCTTSGGGBCHHHHHHHHHHHTTT
T ss_pred -CeEEEEecCCccCc---H-HHHHhCCEeecCCCCCCccHHHHHHHHHHHhCC
Confidence 98888 664431 1 112234455545445556677776665443333
No 149
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.97 E-value=9.2e-06 Score=93.23 Aligned_cols=90 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred eEEEEccchh-hhhhhhhHHHHhH------------------------HHHhhhHHHHHHHhhcCCC--eeEEcCCCCCC
Q psy9513 1218 QLIVITHDEE-FIENLTAIDRAYV------------------------VRIVRDHKALAETFSRNCG--IFALDEPTTNL 1270 (1491)
Q Consensus 1218 ~l~~i~~~~~-~~~~L~~~~~~~~------------------------~~l~~~~~~~a~~~~~~~~--~l~lDEp~~~l 1270 (1491)
+++|++|++. +++.+++.+++.+ ..+++||++||++|+.+|+ +|+|| ||+||
T Consensus 212 ~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 212 GCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp TCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred CeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 4899999988 8888877776532 1236799999999999999 99999 99999
Q ss_pred ChHhH---H-hhcCceEEEEcc---------CHHHHHHHhccccceEEEEecCCC
Q psy9513 1271 DIKNA---S-DQKNFQLIVITH---------DEEFIENLTAIDRAYVVRIVRDHK 1312 (1491)
Q Consensus 1271 D~~~~---~-~~~~~~~i~~th---------d~~~~~~~~~~~~~~~~~l~~~~~ 1312 (1491)
|+.+. . ...|.++|++|| .+..+..++ ..+..+..|..
T Consensus 291 D~~~~~~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~----~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQAREFNEVVGITGLILTKLDGSARGGCVVSVVEELG----IPVKFIGVGEA 341 (359)
T ss_dssp GGHHHHHHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHC----CCEEEEECSSS
T ss_pred CHHHHHHHHHHhcCCeEEEEecCcccccccHHHHHHHHhC----CCEEEEeCCCC
Confidence 99887 2 235899999999 344444554 67777776643
No 150
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.8e-06 Score=101.45 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=56.5
Q ss_pred HHHHhhhHHHHHHH--hhcCCCe----eEEcC-CCCCCChHhH-----HhhcCceEEEEccCHH------HHHHHhcccc
Q psy9513 1240 VVRIVRDHKALAET--FSRNCGI----FALDE-PTTNLDIKNA-----SDQKNFQLIVITHDEE------FIENLTAIDR 1301 (1491)
Q Consensus 1240 ~~~l~~~~~~~a~~--~~~~~~~----l~lDE-p~~~lD~~~~-----~~~~~~~~i~~thd~~------~~~~~~~~~~ 1301 (1491)
++.-++||+++|+| |+.+|++ ||||| ||++||+... ....+.++|+||||.+ ++..+|
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~---- 311 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFG---- 311 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhc----
Confidence 34448999999999 9999999 99999 9999998722 2344889999999877 778889
Q ss_pred ce-----EEEEe-cC
Q psy9513 1302 AY-----VVRIV-RD 1310 (1491)
Q Consensus 1302 ~~-----~~~l~-~~ 1310 (1491)
|+ +++|. .|
T Consensus 312 dr~~~~~vi~l~k~G 326 (460)
T 2npi_A 312 PELGNNNIFFIPKLD 326 (460)
T ss_dssp HHHCGGGEEEECCCT
T ss_pred ccccCCEEEEEeCCC
Confidence 98 99998 55
No 151
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.93 E-value=1.2e-06 Score=109.40 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=50.6
Q ss_pred EeeccceEEEccCCCChhhHHHHHHhhhcCCCCC-CCCCCceEeeCCCCC--C-CcHHHhhcCcccc-ccCCCCCCccHH
Q psy9513 24 RFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQ-GASSGKNFVHDPRIG--K-KDEASASSGKNFV-HDPRIGKKDETH 98 (1491)
Q Consensus 24 ~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~-~~~~g~~~~~~~~~~--~-~~~~~~~~~~~~~-q~~~~~~~~~~~ 98 (1491)
+|+.|.++||||||||||||+++| .|...| ++ |.+.++|..+. . ......+..++|+ |++.+.+..++.
T Consensus 42 ~l~lp~iaIvG~nGsGKSTLL~~I----~Gl~~P~~s--G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~ 115 (608)
T 3szr_A 42 DLALPAIAVIGDQSSGKSSVLEAL----SGVALPRGS--GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVE 115 (608)
T ss_dssp SCCCCCEECCCCTTSCHHHHHHHH----HSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHH
T ss_pred cccCCeEEEECCCCChHHHHHHHH----hCCCCCCCC--CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHH
Confidence 577889999999999999999999 999877 66 98888776531 1 1112234567888 888888877887
Q ss_pred HHHHhh
Q psy9513 99 AIVKLQ 104 (1491)
Q Consensus 99 ~~v~~~ 104 (1491)
.+|.+.
T Consensus 116 e~i~~~ 121 (608)
T 3szr_A 116 KEINKA 121 (608)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 777654
No 152
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.90 E-value=2.1e-06 Score=92.01 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=35.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCcccc
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFV 86 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (1491)
+++|+||||||||||+++| .|..||....|.+.+.+.... .....+++|+
T Consensus 18 ii~l~GpsGsGKSTLlk~L----~g~~~p~~~~g~v~~ttr~~~----~~e~~gi~y~ 67 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQAL----LKTQPLYDTQVSVSHTTRQPR----PGEVHGEHYF 67 (219)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHHSCTTTEEECCCEECSCCC----TTCCBTTTBE
T ss_pred EEEEECCCCCCHHHHHHHH----hccCCCCceEEEEEecCCCCC----cccccCceEE
Confidence 9999999999999999999 898886211377777664431 1123456666
No 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.89 E-value=3.8e-06 Score=95.61 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=53.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHH------HhhcCcccc-ccCCCCCCccHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEA------SASSGKNFV-HDPRIGKKDETHAIV 101 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~-q~~~~~~~~~~~~~v 101 (1491)
+++|+|||||||||++.+| +|.++|.+ |.+.+.|.++.+.... ....++.|+ |...+.+..++..+|
T Consensus 131 vi~lvG~nGaGKTTll~~L----ag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKL----ANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp EEEEECCTTSSHHHHHHHH----HHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 9999999999999999999 88888887 9999988777442211 223456677 777666666777777
Q ss_pred Hhhc
Q psy9513 102 KLQC 105 (1491)
Q Consensus 102 ~~~~ 105 (1491)
.+..
T Consensus 205 ~~~~ 208 (328)
T 3e70_C 205 QHAK 208 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6644
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.88 E-value=2.3e-06 Score=88.30 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=21.6
Q ss_pred EEeecc---ceEEEccCCCChhhHHHHH
Q psy9513 23 VRFQRP---LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 23 i~f~~~---~~~i~G~NGaGKStl~~~i 47 (1491)
|+|+++ +++|+||||||||||++++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 566654 9999999999999999975
No 155
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.87 E-value=4.6e-07 Score=104.37 Aligned_cols=80 Identities=15% Similarity=0.006 Sum_probs=56.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCc----HH
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKD----EA 77 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~----~~ 77 (1491)
|++.++ ++|++... .+++|+++ +++|+||||||||||+++| +|.++|.+ |.+.+.+..+.... ..
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l----~g~~~~~~--g~v~i~~~d~~~~~~~~~~~ 103 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDAL----GSLLTAAG--HKVAVLAVDPSSTRTGGSIL 103 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHH----HHHHHHTT--CCEEEEEECGGGGSSCCCSS
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHH----HHhhhhCC--CEEEEEEEcCcccccccchH
Confidence 667777 47764444 77888765 9999999999999999999 88888887 99888776552110 01
Q ss_pred HhhcCcccc-ccCCCC
Q psy9513 78 SASSGKNFV-HDPRIG 92 (1491)
Q Consensus 78 ~~~~~~~~~-q~~~~~ 92 (1491)
..+..++++ |++.++
T Consensus 104 ~~~~~i~~v~q~~~~~ 119 (337)
T 2qm8_A 104 GDKTRMARLAIDRNAF 119 (337)
T ss_dssp CCGGGSTTGGGCTTEE
T ss_pred HHhhhheeeccCcccc
Confidence 123456777 766554
No 156
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.86 E-value=9.5e-07 Score=105.51 Aligned_cols=63 Identities=14% Similarity=0.059 Sum_probs=48.5
Q ss_pred eeeecc-cccCCCCcceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCC-c-eEeeCCCCCCCcHHHhh
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSG-K-NFVHDPRIGKKDEASAS 80 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g-~-~~~~~~~~~~~~~~~~~ 80 (1491)
+.+.|+ ++|+ +++|.+. +++|+||||||||||+++| +|..+|.+ | . ++++|. . +
T Consensus 119 i~~~nl~~~y~-----~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L----~Gl~~p~~--G~~pI~vdg~-~--------~ 178 (460)
T 2npi_A 119 KYIYNLHFMLE-----KIRMSNFEGPRVVIVGGSQTGKTSLSRTL----CSYALKFN--AYQPLYINLD-P--------Q 178 (460)
T ss_dssp HHHHHHHHHHH-----HHHHHSSSCCCEEEEESTTSSHHHHHHHH----HHTTHHHH--CCCCEEEECC-T--------T
T ss_pred hhhhhhhehhh-----cCceEeCCCCEEEEECCCCCCHHHHHHHH----hCcccccC--CceeEEEcCC-c--------c
Confidence 556666 4664 4666653 9999999999999999999 99999988 9 8 988873 1 3
Q ss_pred cCcccc-ccC
Q psy9513 81 SGKNFV-HDP 89 (1491)
Q Consensus 81 ~~~~~~-q~~ 89 (1491)
.+++|+ |+.
T Consensus 179 ~~i~~vpq~~ 188 (460)
T 2npi_A 179 QPIFTVPGCI 188 (460)
T ss_dssp SCSSSCSSCC
T ss_pred CCeeeeccch
Confidence 456777 765
No 157
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.85 E-value=1.9e-06 Score=95.07 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=42.4
Q ss_pred eeeecccccCCCCc-ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCC-CCCCceEeeCCCC
Q psy9513 7 LHIMGIRNFPADKN-RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQG-ASSGKNFVHDPRI 71 (1491)
Q Consensus 7 l~i~~~~~~~~~~~-~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~-~~~g~~~~~~~~~ 71 (1491)
+.+.++ +|. .. .++++..+ +++|+|||||||||++++| .|.++|. + |.+.+.|..+
T Consensus 6 ~~l~~l-~~~--~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l----~g~~~~~~~--G~I~~~g~~i 64 (261)
T 2eyu_A 6 PEFKKL-GLP--DKVLELCHRKMGLILVTGPTGSGKSTTIASM----IDYINQTKS--YHIITIEDPI 64 (261)
T ss_dssp CCGGGS-SCC--THHHHGGGCSSEEEEEECSTTCSHHHHHHHH----HHHHHHHCC--CEEEEEESSC
T ss_pred CChHHC-CCH--HHHHHHhhCCCCEEEEECCCCccHHHHHHHH----HHhCCCCCC--CEEEEcCCcc
Confidence 445554 243 34 56665555 9999999999999999999 8988886 6 9988877655
No 158
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.80 E-value=7.6e-06 Score=92.73 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=36.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEe---eCCCCCCCcHHHhhcCcccc-ccCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFV---HDPRIGKKDEASASSGKNFV-HDPRIG 92 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~-q~~~~~ 92 (1491)
+++|+||||||||||+++| . ..+|.+ |.+.+ .|..+...........++|+ |.|++.
T Consensus 167 i~~l~G~sG~GKSTLln~l----~-~~~~~~--G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRL----T-GEELRT--QEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp EEEEECSTTSSHHHHHHHH----H-SCCCCC--SCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred EEEEECCCCCCHHHHHHHH----H-HhhCcc--cccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 8999999999999999999 6 778887 99988 66555332111111256777 777543
No 159
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.79 E-value=1.3e-06 Score=97.78 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=40.9
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeC
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHD 68 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~ 68 (1491)
|.++|+ .+|+ ..+ .+|+|.++ +++|+||||||||||+++| .|.+ + |.|...+
T Consensus 102 i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL----~gl~---~--G~I~~~v 158 (305)
T 2v9p_A 102 FNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSL----IHFL---G--GSVLSFA 158 (305)
T ss_dssp HHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHH----HHHH---T--CEEECGG
T ss_pred EEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHH----hhhc---C--ceEEEEe
Confidence 667777 4665 234 77888876 9999999999999999999 7877 4 8876554
No 160
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.78 E-value=3.6e-06 Score=89.22 Aligned_cols=64 Identities=11% Similarity=0.118 Sum_probs=41.1
Q ss_pred ccCCCCc-ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCcccc-ccC
Q psy9513 14 NFPADKN-RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFV-HDP 89 (1491)
Q Consensus 14 ~~~~~~~-~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-q~~ 89 (1491)
+|++..+ .+| ..+ +++|+||||||||||+++| +|. +|.+ |.|...+ +... ....+..++|+ |++
T Consensus 9 ~~g~~~~l~~i--~~Ge~~~liG~nGsGKSTLl~~l----~Gl-~p~~--G~I~~~~--~~~~-~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAI--DTNTIVFGLGPAGSGKTYLAMAK----AVQ-ALQS--KQVSRII--LTRP-AVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHH--HHCSEEEEECCTTSSTTHHHHHH----HHH-HHHT--TSCSEEE--EEEC-SCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhc--cCCCEEEEECCCCCCHHHHHHHH----hcC-CCcC--CeeeeEE--ecCC-chhhhcceEEecCCH
Confidence 5554333 444 344 9999999999999999999 999 8888 8874311 1000 01124567888 764
No 161
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.78 E-value=9.8e-06 Score=91.92 Aligned_cols=37 Identities=14% Similarity=0.280 Sum_probs=25.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEe---eCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFV---HDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~---~~~~~ 71 (1491)
+++|+||||||||||+++| .|..+|.+ |.+.+ .|..+
T Consensus 171 iv~l~G~sG~GKSTll~~l----~g~~~~~~--G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAI----NPGLKLRV--SEVSEKLQRGRHT 210 (301)
T ss_dssp EEEEECSTTSSHHHHHHHH----STTCCCC---------------C
T ss_pred eEEEECCCCCcHHHHHHHh----cccccccc--cceecccCCCCCc
Confidence 9999999999999999999 99999998 99888 66555
No 162
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.75 E-value=1.9e-06 Score=97.69 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=24.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
++||+||||||||||+++| .|.++|..
T Consensus 92 ivgI~G~sGsGKSTL~~~L----~gll~~~~ 118 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVL----QALLARWD 118 (312)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHHHHTST
T ss_pred EEEEECCCCchHHHHHHHH----HhhccccC
Confidence 9999999999999999999 88877764
No 163
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.73 E-value=7.3e-06 Score=87.69 Aligned_cols=30 Identities=20% Similarity=0.524 Sum_probs=23.8
Q ss_pred EEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 23 VRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 23 i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.++..+ +++|+||||||||||+++| .|.++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l----~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCL----RERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHH----HHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHH----HhhCC
Confidence 344555 9999999999999999999 88875
No 164
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.73 E-value=6.8e-06 Score=94.18 Aligned_cols=44 Identities=23% Similarity=0.315 Sum_probs=38.1
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
..++|.++ +++|+||||||||||+++| .|.++|.+ |.+.+.|..
T Consensus 162 ~~l~~~i~~g~~v~i~G~~GsGKTTll~~l----~g~~~~~~--g~i~i~~~~ 208 (330)
T 2pt7_A 162 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSI----MEFIPKEE--RIISIEDTE 208 (330)
T ss_dssp HHHHHHHHHTCCEEEEESTTSCHHHHHHHG----GGGSCTTS--CEEEEESSC
T ss_pred hhhhhhccCCCEEEEECCCCCCHHHHHHHH----hCCCcCCC--cEEEECCee
Confidence 45566653 9999999999999999999 99999987 999998864
No 165
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.73 E-value=5.3e-06 Score=95.36 Aligned_cols=58 Identities=19% Similarity=0.109 Sum_probs=46.2
Q ss_pred ceeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 6 QLHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 6 ~l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
.+++.++ +.|+ +..+ ..+ |+++ +++|+||||||||||+++| .|..+|+. |.+.+.|.+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I----~g~~~~~~--g~i~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMI----CNGASADI--IVLALIGER 108 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHH----HHHSCCSE--EEEEEESCC
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHH----hcCCCCCE--EEEEEeccc
Confidence 3667788 5786 4444 666 7765 9999999999999999999 99998887 877777654
No 166
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.71 E-value=6.1e-06 Score=98.00 Aligned_cols=91 Identities=8% Similarity=-0.018 Sum_probs=61.2
Q ss_pred ceeeecc-cccC-CCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC---CCCC--
Q psy9513 6 QLHIMGI-RNFP-ADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR---IGKK-- 74 (1491)
Q Consensus 6 ~l~i~~~-~~~~-~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~---~~~~-- 74 (1491)
.+.+.++ +.|+ +..+ .++ |+++ +++|+||||||||||+++| .|..+|.. |.+.+.|.+ +...
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~I----ag~~~~~~--G~i~~~G~r~~ev~~~~~ 203 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMM----ARYTRADV--IVVGLIGERGREVKDFIE 203 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHH----HHHSCCSE--EEEEEESCCHHHHHHHHH
T ss_pred ceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHH----hcccCCCe--EEEEEeceecHHHHHHHH
Confidence 3677788 5786 4444 677 7775 9999999999999999999 99999988 988888863 2110
Q ss_pred ---cHHHhhcCcccc-cc-CCCCCCccHHHHHHh
Q psy9513 75 ---DEASASSGKNFV-HD-PRIGKKDETHAIVKL 103 (1491)
Q Consensus 75 ---~~~~~~~~~~~~-q~-~~~~~~~~~~~~v~~ 103 (1491)
........++|+ |. ..+....++..++.+
T Consensus 204 ~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 204 NILGPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp TTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhccccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 012234557788 74 333334445444443
No 167
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.68 E-value=6.5e-06 Score=95.86 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=49.4
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHhhcCcccc--ccCCC--CC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFV--HDPRI--GK 93 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--q~~~~--~~ 93 (1491)
..++|.++ +++|+||||||||||+++| .|.++|.. |.+.+.|..-... ...+..++++ |++.. .+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l----~~~~~~~~--g~I~ie~~~e~~~--~~~~~~v~~v~~q~~~~~~~~ 237 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKAL----MQEIPFDQ--RLITIEDVPELFL--PDHPNHVHLFYPSEAKEEENA 237 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHH----HTTSCTTS--CEEEEESSSCCCC--TTCSSEEEEECC---------
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHH----HhcCCCCc--eEEEECCccccCc--cccCCEEEEeecCcccccccc
Confidence 44566553 9999999999999999999 99999987 9999987532111 0122334444 33322 14
Q ss_pred CccHHHHHHhhcc
Q psy9513 94 KDETHAIVKLQCT 106 (1491)
Q Consensus 94 ~~~~~~~v~~~~~ 106 (1491)
..+...+|...+.
T Consensus 238 ~~t~~~~i~~~l~ 250 (361)
T 2gza_A 238 PVTAATLLRSCLR 250 (361)
T ss_dssp -CCHHHHHHHHTT
T ss_pred ccCHHHHHHHHHh
Confidence 4567777776554
No 168
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.67 E-value=5.6e-06 Score=102.16 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=53.1
Q ss_pred hhHHHHHHHhhcCCCeeEEcCCCCCCChH-----hH---------HhhcCceEEEEccCH----------HHHHHHhccc
Q psy9513 1245 RDHKALAETFSRNCGIFALDEPTTNLDIK-----NA---------SDQKNFQLIVITHDE----------EFIENLTAID 1300 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~~~l~lDEp~~~lD~~-----~~---------~~~~~~~~i~~thd~----------~~~~~~~~~~ 1300 (1491)
+|++++|+++..+|++|++| ||++||+. .. ....|.|+|+||||. .++..+|
T Consensus 359 ~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~--- 434 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTIT--- 434 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTC---
T ss_pred HHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceee---
Confidence 45679999999999999999 99999988 54 345689999999998 7777888
Q ss_pred cceEEEEecCC
Q psy9513 1301 RAYVVRIVRDH 1311 (1491)
Q Consensus 1301 ~~~~~~l~~~~ 1311 (1491)
|++++|..|.
T Consensus 435 -D~vi~L~~ge 444 (525)
T 1tf7_A 435 -DTIILLQYVE 444 (525)
T ss_dssp -SEEEEEEEEE
T ss_pred -eEEEEEEEEE
Confidence 9999888763
No 169
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=9.8e-06 Score=90.79 Aligned_cols=58 Identities=16% Similarity=0.288 Sum_probs=29.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEe---eCCCCCCCcHHHhhcCcccc-ccCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFV---HDPRIGKKDEASASSGKNFV-HDPRIGK 93 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~-q~~~~~~ 93 (1491)
+++|+||||||||||+++| .|..+|.+ |.+.+ .|..+.... .......+|+ |.|++..
T Consensus 175 ~~~lvG~sG~GKSTLln~L----~g~~~~~~--G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAI----SPELGLRT--NEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp EEEEEESHHHHHHHHHHHH----CC---------------------CCCC-CEEEETTEEEESSCSCSS
T ss_pred EEEEECCCCCCHHHHHHHh----cccccccc--cceeeecCCCcccccHH-HHhhcCCEEEecCCCccc
Confidence 9999999999999999999 99998888 98877 554442211 1111225677 7776543
No 170
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.61 E-value=1.4e-05 Score=88.64 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=36.6
Q ss_pred CCcccceeeeccc-ccCCCCcceE--Eeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 1 MALLDQLHIMGIR-NFPADKNRVV--RFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 1 m~~~~~l~i~~~~-~~~~~~~~~i--~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
|..+..+.+.++. .|.+.+. -+ .+..+ +++|+||||||||||+++|... |..+++. |.+++.+..
T Consensus 1 ~~~~~~~~~~~i~tg~~~lD~-~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~--~~~~~~~--~~~~~~~~~ 69 (251)
T 2ehv_A 1 MRIMAYQPVRRVKSGIPGFDE-LIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYK--GAEEYGE--PGVFVTLEE 69 (251)
T ss_dssp -------CCCEECCSCTTTGG-GTTTSEETTCEEEEECCTTSSHHHHHHHHHHH--HHHHHCC--CEEEEESSS
T ss_pred CccccccccceeecCCHhHHH-HhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCC--eEEEEEccC
Confidence 3333446677663 4443221 12 34555 9999999999999999999211 4434454 666666543
No 171
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.60 E-value=1.8e-05 Score=84.68 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
+++|+||||||||||+++| .|.+|
T Consensus 9 ii~l~Gp~GsGKSTl~~~L----~~~~~ 32 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRAL----VKALA 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHHSS
T ss_pred EEEEECcCCCCHHHHHHHH----HhhCC
Confidence 9999999999999999999 77764
No 172
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.59 E-value=2.3e-05 Score=91.69 Aligned_cols=37 Identities=19% Similarity=0.279 Sum_probs=31.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+||||||||||+++| +|..+|.. |.+.++|..+
T Consensus 71 ~valvG~nGaGKSTLln~L----~Gl~~p~~--GsI~~~g~~~ 107 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTL----RGIGNEEE--GAAKTGVVEV 107 (413)
T ss_dssp EEEEEECTTSSHHHHHHHH----HTCCTTST--TSCCCCC---
T ss_pred EEEEECCCCCcHHHHHHHH----hCCCCccC--ceEEECCeec
Confidence 7999999999999999999 99999998 9988776544
No 173
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.58 E-value=2.2e-06 Score=91.76 Aligned_cols=53 Identities=11% Similarity=-0.063 Sum_probs=41.4
Q ss_pred HhhcCCCeeEEcCCCCCC----ChHhH---------H-hhcCceEEEEccCHHHHHHHhccccceEEEEec
Q psy9513 1253 TFSRNCGIFALDEPTTNL----DIKNA---------S-DQKNFQLIVITHDEEFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1253 ~~~~~~~~l~lDEp~~~l----D~~~~---------~-~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~ 1309 (1491)
+|+.+|++++|||||+++ |+... . ...|+++|+||||++++..+| |+++++.+
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~----d~i~~l~~ 203 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAEL----VSLLVGTA 203 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHH----HHHHC---
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHH----HHHHHhcc
Confidence 567789999999999998 44343 2 245899999999999999999 99888743
No 174
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.55 E-value=3.6e-05 Score=90.46 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=35.7
Q ss_pred ceeeecc-cccCCCCc-ceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 6 QLHIMGI-RNFPADKN-RVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 6 ~l~i~~~-~~~~~~~~-~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
.|.+.|+ ++|++..+ .+++|.+ +|+||||||||||+++| +|..+|..
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I---~lvG~sGaGKSTLln~L----~g~~~~~~ 59 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL---MVVGESGLGKSTLINSL----FLTDLYSP 59 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE---EEECCTTSSHHHHHHHH----TTCCCCCC
T ss_pred cEEEEecceeECCEEEecCCCEEE---EEECCCCCcHHHHHHHH----hCCCCCCC
Confidence 3788899 68987666 8888886 99999999999999999 88876543
No 175
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.54 E-value=1.5e-05 Score=92.83 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=34.1
Q ss_pred ceeeecccccCCCCcceEEeecc---c--eEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 6 QLHIMGIRNFPADKNRVVRFQRP---L--TLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 6 ~l~i~~~~~~~~~~~~~i~f~~~---~--~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.|.+.|-++|++....+++|+++ + ++|+||||||||||+++| +|..
T Consensus 16 ~l~~~~~~~y~~~~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L----~G~~ 66 (427)
T 2qag_B 16 TVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTL----FNTK 66 (427)
T ss_dssp -CCCCCCC-CC--CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHH----HTSC
T ss_pred eEEEeeEEEECCeecCCCceEecCCCeeEEEEECCCCCCHHHHHHHH----hCcc
Confidence 46677756787544567777765 7 999999999999999999 7863
No 176
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.52 E-value=2.6e-05 Score=85.10 Aligned_cols=33 Identities=18% Similarity=0.382 Sum_probs=18.6
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhc-CCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALT-NEYPQ 57 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~-g~~~~ 57 (1491)
.+++|+++ +++|+|||||||||++++| . |.+|+
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L----~~~~~~~ 54 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKL----LEKQKNN 54 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHH----HC----C
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHH----HhcCCCC
Confidence 56777764 9999999999999999999 7 77754
No 177
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.51 E-value=2.5e-05 Score=88.42 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=21.5
Q ss_pred cc-cccCCCCc-ceEEeeccceEEEccCCCChhhHHHHHHhhhcCC-CCCCCCCCceEeeCCCC
Q psy9513 11 GI-RNFPADKN-RVVRFQRPLTLIVGENGCGKTTIIECIKFALTNE-YPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 11 ~~-~~~~~~~~-~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~-~~~~~~~g~~~~~~~~~ 71 (1491)
|+ ++|++..+ .+++|.+ +|+||||||||||+++| +|. .+|.+ | +.+.|..+
T Consensus 3 ~l~~~~~~~~~l~~~~~~I---~lvG~nG~GKSTLl~~L----~g~~~~~~~--g-i~~~g~~~ 56 (301)
T 2qnr_A 3 NLPNQVHRKSVKKGFEFTL---MVVGESGLGKSTLINSL----FLTDLYPER--V-ISGAAEKI 56 (301)
T ss_dssp ---------------CEEE---EEEEETTSSHHHHHHHH----HC-------------------
T ss_pred CCcceECCEEEEcCCCEEE---EEECCCCCCHHHHHHHH----hCCCccCCC--C-cccCCccc
Confidence 45 57876666 7788876 99999999999999999 886 77776 7 65555433
No 178
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.50 E-value=4.5e-05 Score=80.42 Aligned_cols=35 Identities=34% Similarity=0.570 Sum_probs=29.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .|. |+. |.+++++..+
T Consensus 11 ~i~l~G~~GsGKSTl~~~L----a~~--~~~--g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEAL----ANL--PGV--PKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHH----HTC--SSS--CEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHH----Hhc--cCC--CeEEEcccch
Confidence 8999999999999999999 886 455 8888876543
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.49 E-value=3.5e-05 Score=80.69 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=23.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQG 58 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~ 58 (1491)
+++|+||||||||||+++| .|.+|+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L----~~~~~~~ 28 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKL----FAEYPDS 28 (186)
T ss_dssp CEEEESSSSSSHHHHHHHH----HHHCGGG
T ss_pred EEEEECCCCCCHHHHHHHH----HhhCCcc
Confidence 7899999999999999999 7877754
No 180
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.49 E-value=2.8e-05 Score=88.73 Aligned_cols=33 Identities=12% Similarity=0.267 Sum_probs=26.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC-CCCCCCceEee
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP-QGASSGKNFVH 67 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~-~~~~~g~~~~~ 67 (1491)
+++|+||||||||||+++| .|..+ |.+ |.+.+.
T Consensus 217 ~~~lvG~sG~GKSTLln~L----~g~~~~~~~--G~I~~~ 250 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNAL----LGLQNEILT--NDVSNV 250 (358)
T ss_dssp EEEEECCTTSSHHHHHHHH----HCCSSCCCC--C-----
T ss_pred EEEEECCCCccHHHHHHHH----hcccccccc--CCcccc
Confidence 9999999999999999999 99998 887 888765
No 181
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.47 E-value=1.3e-05 Score=94.36 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .|.++|.. |.|.+.+..+
T Consensus 169 ii~I~GpnGSGKTTlL~al----lg~l~~~~--g~I~~~ed~i 205 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAG----LQELNSSE--RNILTVEDPI 205 (418)
T ss_dssp EEEEECSTTSCHHHHHHHH----HHHHCCTT--SCEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHH----HhhcCCCC--CEEEEecccc
Confidence 9999999999999999999 88888887 9888776544
No 182
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.40 E-value=2.4e-05 Score=81.43 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=29.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| +|.++ .+ | +.++|...
T Consensus 3 ~i~i~G~nG~GKTTll~~l----~g~~~-~~--G-i~~~g~~~ 37 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKA----SEVLK-SS--G-VPVDGFYT 37 (189)
T ss_dssp CEEEESCCSSCHHHHHHHH----HHHHH-HT--T-CCCEEEEC
T ss_pred EEEEECCCCChHHHHHHHH----Hhhcc-cC--C-EEEcCEec
Confidence 6899999999999999999 88877 66 8 77766444
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.40 E-value=4.8e-05 Score=80.44 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
+++|+||||||||||+++| .|.+|
T Consensus 6 ~i~lvGpsGaGKSTLl~~L----~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKL----FQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHH----HHHHT
T ss_pred EEEEECCCCCCHHHHHHHH----HhhCc
Confidence 8999999999999999999 66654
No 184
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.38 E-value=4.7e-05 Score=83.79 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=20.1
Q ss_pred ccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHh
Q psy9513 14 NFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 14 ~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~ 49 (1491)
+-++..+ .+++|+++ +++|+|||||||||++++|.-
T Consensus 8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3344445 78888875 999999999999999999933
No 185
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.30 E-value=2.4e-05 Score=86.27 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHD 68 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~ 68 (1491)
.+++|+|||||||||++++|.=.+ |..+|.. |.+.+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l-g~~~~~~--G~i~~~~ 65 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF-GLQHLSS--GHFLREN 65 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-CCCCEEH--HHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh-CCeEecH--HHHHHHH
Confidence 399999999999999999992222 8888877 8776654
No 186
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.28 E-value=4.5e-05 Score=81.58 Aligned_cols=39 Identities=15% Similarity=0.219 Sum_probs=29.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCC-CCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQG-ASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~-~~~g~~~~~~~~~ 71 (1491)
+++|+||||||||||+++| .|.++|. ...|.+.++|..+
T Consensus 24 ~v~I~G~sGsGKSTl~~~l----~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPL----AAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEECCTTSCTHHHHHHH----HHHHHHTTCCEEEEESGGGBC
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHhhcCCceEEEecCCCcC
Confidence 9999999999999999999 7777642 1126676666544
No 187
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.27 E-value=5.3e-05 Score=93.38 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=52.3
Q ss_pred ceeeeccccc-CCCCc-ceEEe-ecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCCCcHHHh
Q psy9513 6 QLHIMGIRNF-PADKN-RVVRF-QRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASA 79 (1491)
Q Consensus 6 ~l~i~~~~~~-~~~~~-~~i~f-~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (1491)
.+..+++..| ++... .+|+| .++ +++|+||||||||||+.++ ++.|..+|+. |.+++.|... .......
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~--ll~Gl~~~~~--g~i~v~g~~~-~~~~~~~ 86 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF--LYNGIIEFDE--PGVFVTFEET-PQDIIKN 86 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH--HHHHHHHHCC--CEEEEESSSC-HHHHHHH
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH--HHHHHHhCCC--CEEEEEEeCC-HHHHHHH
Confidence 3566667444 34445 78888 654 9999999999999999994 1268888887 9999988653 1111122
Q ss_pred hcCcccc-ccC
Q psy9513 80 SSGKNFV-HDP 89 (1491)
Q Consensus 80 ~~~~~~~-q~~ 89 (1491)
...++|+ |++
T Consensus 87 ~~~~g~~~q~~ 97 (525)
T 1tf7_A 87 ARSFGWDLAKL 97 (525)
T ss_dssp HGGGTCCHHHH
T ss_pred HHHcCCChHHh
Confidence 3455666 543
No 188
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.27 E-value=4.1e-05 Score=82.22 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=28.6
Q ss_pred eeeecc-cccCCCCcceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCC-----CCCCCCCceE
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEY-----PQGASSGKNF 65 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~-----~~~~~~g~~~ 65 (1491)
|.++|+ .+|+.....++.+..+ .++|+||||||||||+++| .|.. +|.. |.++
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l----~g~~~~~~~~~~~--G~~~ 63 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTL----TNQKSLARTSKTP--GRTQ 63 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTT----CCC---------------C
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHH----hCCCccccccCCC--ccce
Confidence 778888 5786322245333334 8999999999999999999 7876 5554 6543
No 189
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.25 E-value=6.3e-05 Score=77.61 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=20.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.++|+||||||||||+++| +|.++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l----~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKI----VERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH----HHHHG
T ss_pred EEEEECCCCCCHHHHHHHH----HHHhC
Confidence 4799999999999999999 66653
No 190
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.25 E-value=0.00014 Score=88.05 Aligned_cols=44 Identities=27% Similarity=0.354 Sum_probs=36.8
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
..++|.+. +++|+|||||||||++++| .|.+||.. |.+.+.|+.
T Consensus 251 ~~l~~~v~~g~~i~I~GptGSGKTTlL~aL----~~~i~~~~--giitied~~ 297 (511)
T 2oap_1 251 AYLWLAIEHKFSAIVVGETASGKTTTLNAI----MMFIPPDA--KVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHTTCCEEEEESTTSSHHHHHHHH----GGGSCTTC--CEEEEESSC
T ss_pred HHHHHHHhCCCEEEEECCCCCCHHHHHHHH----HhhCCCCC--CEEEEcCcc
Confidence 34555443 8999999999999999999 89999987 988888865
No 191
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.22 E-value=0.024 Score=61.76 Aligned_cols=87 Identities=16% Similarity=0.203 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 811 LQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQ 890 (1491)
Q Consensus 811 l~~~~~~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~ 890 (1491)
+......+..+..++..+...+...+..+.... ..+.+..+..+++.+..++..++..+..+...++.+...+..+...
T Consensus 55 l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~ 133 (256)
T 3na7_A 55 KLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKE 133 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555566666666666666665433 5677788888888888877777777777777777766666666655
Q ss_pred HHHHHHHH
Q psy9513 891 KNDIHSKQ 898 (1491)
Q Consensus 891 ~~~l~~~~ 898 (1491)
+..+...+
T Consensus 134 l~~~~~~l 141 (256)
T 3na7_A 134 MLELEKLA 141 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554433
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.20 E-value=0.00014 Score=79.39 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=22.4
Q ss_pred eecc-ceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 25 FQRP-LTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 25 f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
+..+ +++|+||||||||||+.+| +|.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l----~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTL----AVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH----HHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH----HHH
Confidence 4444 9999999999999999999 664
No 193
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.19 E-value=6e-05 Score=87.89 Aligned_cols=37 Identities=27% Similarity=0.373 Sum_probs=31.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCC-CCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQG-ASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~-~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .|.++|. + |.|.+.+..+
T Consensus 138 ~i~ivG~~GsGKTTll~~l----~~~~~~~~~--g~I~~~e~~~ 175 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASM----IDYINQTKS--YHIITIEDPI 175 (372)
T ss_dssp EEEEECSSSSSHHHHHHHH----HHHHHHHSC--CEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHH----HhhcCcCCC--cEEEEecccH
Confidence 9999999999999999999 8888886 6 8886655443
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.00012 Score=76.15 Aligned_cols=28 Identities=21% Similarity=0.508 Sum_probs=23.7
Q ss_pred eccceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 26 QRPLTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 26 ~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
...+++|+||||||||||+++| .|.+|+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L----~~~~~~ 31 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTL----ITKHPD 31 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH----HHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHH----HhhCCc
Confidence 3348999999999999999999 776654
No 195
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.14 E-value=3.7e-05 Score=78.43 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=29.0
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCCCCCC---CCCCceEeeCCCC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNEYPQG---ASSGKNFVHDPRI 71 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~---~~~g~~~~~~~~~ 71 (1491)
++++|+||||||||||+++| .|.++|. . |.+.++|..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L----~~~~~~~g~~~--G~I~~dg~~i 43 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRM----MPILRERGLRV--AVVKRHAHGD 43 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHH----HHHHHHTTCCE--EEEEC-----
T ss_pred eEEEEECCCCCCHHHHHHHH----HHHhhhcCCce--EEEEEcCccc
Confidence 47899999999999999999 8888776 5 8888877653
No 196
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00014 Score=76.51 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=26.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
+++|+|||||||||++++| .+ |.. |.+++++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L----~~---~~~--g~~~i~~d~ 36 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRL----AA---QLD--NSAYIEGDI 36 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH----HH---HSS--SEEEEEHHH
T ss_pred EEEEECCCCCcHHHHHHHH----hc---ccC--CeEEEcccc
Confidence 7899999999999999999 55 334 767776543
No 197
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.06 E-value=0.00017 Score=82.37 Aligned_cols=38 Identities=39% Similarity=0.493 Sum_probs=25.8
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCCC--------CCCCCCCceEeeCCCC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNEY--------PQGASSGKNFVHDPRI 71 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~~--------~~~~~~g~~~~~~~~~ 71 (1491)
++++|+|||||||||++++| .|.. .|.. |.+.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l----~~~~~~~~~aVi~~d~--G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHI----LNEQHGYKIAVIENEF--GEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHH----HHSCCCCCEEEECSSC--CSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHH----HhhcCCCcEEEEEecC--cccCccHHHH
Confidence 47777888888888887777 5554 4555 7776666444
No 198
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.0001 Score=81.25 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceE
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNF 65 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~ 65 (1491)
+++|+|||||||||++++|.=.| |...+++ |.++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L-g~~~~d~--g~i~ 62 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL-NWRLLDS--GAIY 62 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT-TCEEEEH--HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCCcCCC--Ccee
Confidence 89999999999999999993222 8888877 8766
No 199
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.02 E-value=0.045 Score=59.60 Aligned_cols=86 Identities=13% Similarity=0.156 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Q psy9513 858 EKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVA 937 (1491)
Q Consensus 858 ~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~~l~~~~~~~~ 937 (1491)
.+...+..+...+..+..++..+...+..+...+...+..+.... ....+..+...+..+...+..++..+.++...++
T Consensus 43 ~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 43 AKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333444444444433333333332211 1113334444444444444444444444444333
Q ss_pred chHHHHH
Q psy9513 938 PIETQLN 944 (1491)
Q Consensus 938 ~l~~~~~ 944 (1491)
.+...+.
T Consensus 122 ~~~~~l~ 128 (256)
T 3na7_A 122 RKSEKQE 128 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 200
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.02 E-value=7.6e-05 Score=79.21 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=28.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCce--EeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKN--FVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~--~~~~~~~ 71 (1491)
+++|+|||||||||++++| .+.++ .. |.+ ++++..+
T Consensus 27 ~i~l~G~sGsGKSTl~~~L----a~~l~-~~--G~~~~~~d~d~~ 64 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACAL----NQMLY-QK--GKLCYILDGDNV 64 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHHHH-HT--TCCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHH-hc--CceEEEecCchh
Confidence 9999999999999999999 66665 33 666 6665433
No 201
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.01 E-value=0.00017 Score=83.07 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=27.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEe
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFV 66 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~ 66 (1491)
+++|+|||||||||++++| .|.++|.. .|.+..
T Consensus 125 ~i~I~GptGSGKTTlL~~l----~g~~~~~~-~~~i~t 157 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAM----LDYLNNTK-YHHILT 157 (356)
T ss_dssp EEEEECSTTSCHHHHHHHH----HHHHHHHC-CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH----HhcccCCC-CcEEEE
Confidence 9999999999999999999 88888764 155443
No 202
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.96 E-value=0.00016 Score=91.51 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=54.4
Q ss_pred ceEEEEccchhhhhhhhhHHHHhH--HHHhhhHHHHHHHh--hcCCCeeEEcCC---CCCCChHhH-------HhhcCce
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYV--VRIVRDHKALAETF--SRNCGIFALDEP---TTNLDIKNA-------SDQKNFQ 1282 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~--~~l~~~~~~~a~~~--~~~~~~l~lDEp---~~~lD~~~~-------~~~~~~~ 1282 (1491)
..++++++ ++..++..+++.. ...+.+++.+|+++ +.+|+++||||| |++||+.+. ....|.+
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~ 690 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAY 690 (765)
T ss_dssp EEECCCSE---EEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE
T ss_pred cceeeHHH---hhccCCHHHHHHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCE
Confidence 45666665 6677777777633 23477888999988 999999999999 899998764 3346899
Q ss_pred EEEEccCHHHHH
Q psy9513 1283 LIVITHDEEFIE 1294 (1491)
Q Consensus 1283 ~i~~thd~~~~~ 1294 (1491)
+|++|||.+++.
T Consensus 691 vl~~TH~~~l~~ 702 (765)
T 1ewq_A 691 TLFATHYFELTA 702 (765)
T ss_dssp EEEECCCHHHHT
T ss_pred EEEEeCCHHHHH
Confidence 999999987754
No 203
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.96 E-value=0.0003 Score=90.82 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=48.5
Q ss_pred HHHhhhHHHHHHHh--hcCCCeeEEcCCCCCCChHhH----------Hhh-cCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1241 VRIVRDHKALAETF--SRNCGIFALDEPTTNLDIKNA----------SDQ-KNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1241 ~~l~~~~~~~a~~~--~~~~~~l~lDEp~~~lD~~~~----------~~~-~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
...|.++..+|+++ +.+|+++||||||+|+|+... ... .|.++|++|||.+++ .++ |++..+
T Consensus 723 Stf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~la----d~~~~v 797 (934)
T 3thx_A 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALA----NQIPTV 797 (934)
T ss_dssp CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGG----GTCTTE
T ss_pred hhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHh----ccccee
Confidence 34466666777766 899999999999999998754 223 489999999997765 467 665555
Q ss_pred ecC
Q psy9513 1308 VRD 1310 (1491)
Q Consensus 1308 ~~~ 1310 (1491)
.+|
T Consensus 798 ~ng 800 (934)
T 3thx_A 798 NNL 800 (934)
T ss_dssp EEE
T ss_pred Eee
Confidence 444
No 204
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.94 E-value=0.00018 Score=77.20 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
+++|+||||||||||+++| .|.++|
T Consensus 8 ~i~i~G~~GsGKSTl~~~l----~~~~~~ 32 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQAL----ARTLGE 32 (211)
T ss_dssp EEEEEESTTSSHHHHHHHH----HHHHGG
T ss_pred EEEEECCCCCCHHHHHHHH----HHHhCC
Confidence 8999999999999999999 666543
No 205
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.92 E-value=0.00028 Score=70.31 Aligned_cols=37 Identities=19% Similarity=0.494 Sum_probs=28.7
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCC--ceEeeCCCC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSG--KNFVHDPRI 71 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g--~~~~~~~~~ 71 (1491)
..++|+||||||||||+++| +|..++ . | .+++.+..+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i----~~~~~~-~--g~~~~~~~~~~~ 75 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAW----VAQALE-A--GKNAAYIDAASM 75 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHH----HHHHHT-T--TCCEEEEETTTS
T ss_pred CEEEEECCCCCCHHHHHHHH----HHHHHh-c--CCcEEEEcHHHh
Confidence 38999999999999999999 666655 3 5 566665544
No 206
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.91 E-value=0.00075 Score=88.42 Aligned_cols=58 Identities=12% Similarity=0.114 Sum_probs=48.9
Q ss_pred hHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhhc-CceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1246 DHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQK-NFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1246 ~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~~-~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
.++++|++++.+|+++||||||+|+|+... .... |.++|++||+.+++..++ ++++++
T Consensus 857 ~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~----d~~~v~ 925 (1022)
T 2o8b_B 857 SETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS----QNVAVR 925 (1022)
T ss_dssp HHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS----SCSSEE
T ss_pred HHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC----Ccceee
Confidence 358999999999999999999999998752 3334 889999999999999988 766554
No 207
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.87 E-value=0.0003 Score=75.13 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
+++|+|||||||||++++| .|.++|..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L----~~~~~~~~ 34 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRI----FEDPSTSY 34 (207)
T ss_dssp EEEEECSTTSCHHHHHHHH----HHCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHH----HHhhCCCe
Confidence 8999999999999999999 77775543
No 208
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.87 E-value=0.0004 Score=72.08 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=22.9
Q ss_pred eEEeec-cceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 22 VVRFQR-PLTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 22 ~i~f~~-~~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
++.... .+++|+||||||||||+++| .+.+|
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L----~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNAL----LSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHH----HHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHH----HhhCC
Confidence 443333 39999999999999999999 55554
No 209
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.83 E-value=0.00038 Score=74.18 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=23.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
+++|+||||||||||+++| .+.+||
T Consensus 10 ~i~l~GpsGsGKsTl~~~L----~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAV----FKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHSTTC
T ss_pred EEEEECcCCCCHHHHHHHH----HhhCCC
Confidence 8999999999999999999 787776
No 210
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.82 E-value=0.00023 Score=80.89 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=39.6
Q ss_pred hHHHHHHHhhcCCCeeEEcCCCC---C---CCh-HhH---------H-hhcCceEEEEccCH--H---------------
Q psy9513 1246 DHKALAETFSRNCGIFALDEPTT---N---LDI-KNA---------S-DQKNFQLIVITHDE--E--------------- 1291 (1491)
Q Consensus 1246 ~~~~~a~~~~~~~~~l~lDEp~~---~---lD~-~~~---------~-~~~~~~~i~~thd~--~--------------- 1291 (1491)
+++. |+++..+|++|++||||+ + +|. ... . ...|.+||++||+. +
T Consensus 137 ~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~d 215 (296)
T 1cr0_A 137 AKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITD 215 (296)
T ss_dssp HHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------C
T ss_pred HHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHH
Confidence 3444 777888899999999998 4 343 222 1 23488899999984 4
Q ss_pred -----HHHHHhccccceEEEEecCC
Q psy9513 1292 -----FIENLTAIDRAYVVRIVRDH 1311 (1491)
Q Consensus 1292 -----~~~~~~~~~~~~~~~l~~~~ 1311 (1491)
.+..+| |+++.|.+|.
T Consensus 216 l~~s~~i~~~a----D~vi~L~~~~ 236 (296)
T 1cr0_A 216 LRGSGALRQLS----DTIIALERNQ 236 (296)
T ss_dssp CC---CHHHHC----SEEEEEEEC-
T ss_pred hcccHHhHhhC----cEEEEEecCc
Confidence 566777 8888887764
No 211
>3l51_B Structural maintenance of chromosomes protein 4; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus} SCOP: d.215.1.0
Probab=96.79 E-value=8.7e-06 Score=82.58 Aligned_cols=122 Identities=11% Similarity=0.032 Sum_probs=90.9
Q ss_pred HHHhcC---C--CCchhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHH
Q psy9513 584 FHLLFD---M--IPEENFKNSLDKALSSITFDINR-----IQEDINAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAELMD 651 (1491)
Q Consensus 584 l~~i~g---~--~~~~~~~~aie~~L~~~~~~i~~-----~~~~i~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~ 651 (1491)
+.|++| + .+++.|+.|++.++| ..++|++ ..++|++|++. .||+|| |++.++.. ... . .
T Consensus 16 ~~Gv~G~v~dLi~v~~~y~~Aie~alg-~l~~iVVd~~~~A~~~i~~Lk~~~~GRatflpL~~i~~~------~~~-~-~ 86 (166)
T 3l51_B 16 IPGIYGRLGDLGAIDEKYDIAISSCCH-ALDYIVVDSIDTAQECVNFLKKHNIGIATFIGLDKMTVW------AKK-M-S 86 (166)
T ss_dssp STTEEEEGGGSCBCCGGGHHHHHHHCG-GGGSEEESCHHHHHHHHHHHHHTTCCCCCEEEGGGTGGG------TTS-C-C
T ss_pred CCCceEEHHHheeeCHHHHHHHHHHHh-hCceEEECCHHHHHHHHHHHHHcCCCeEEEEECcccccc------ccc-c-c
Confidence 677777 2 678999999999998 6777766 44589999998 999999 99988641 100 0 0
Q ss_pred HHHhhhCCCChHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc---cc------cCCCCC
Q psy9513 652 RMELVLGSKPFEDELDRV-TLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC---TR------FFESDY 715 (1491)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~ 715 (1491)
.+ ..++..+.+.+++++ ++++..+..++++.+.++++++.|...+....+++++| |. .||||+
T Consensus 87 ~~-~~~~~~~~a~dlv~~~d~~~~~a~~~llg~tlVv~dl~~A~~~~~~~~~~~r~VTldGdli~~~G~~tGG~ 159 (166)
T 3l51_B 87 KI-QTPENTPRLFDLVKVKNEEIRQAFYFALRDTLVANNLDQATRVAYQRDRRWRVVTLQGQIIEQSGTMSGGL 159 (166)
T ss_dssp CC-CCGGGCCBHHHHCBCSCHHHHHHHHHHHTTCEEESSHHHHHHHHBCSSCBCCEEETTSCEECTTCCEEECC
T ss_pred cc-ccccchhhHhheeeCCcHHHHHHHHHHcCCEEEECCHHHHHHHHHhhCCCcEEEECCCEEEeCCEEEECCC
Confidence 00 012223456678888 57999999999999999999999999987766788888 33 677775
No 212
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.78 E-value=0.00038 Score=73.78 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=26.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .|.+ |.+++++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L----~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGV----ADET------GLEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHHH------CCEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHH----HHhh------CCeEEccccc
Confidence 9999999999999999999 5543 5567766554
No 213
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.77 E-value=0.00046 Score=87.37 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=30.8
Q ss_pred eeeecccc-c---CCCCc-ceEEeeccceEEEccCCCChhhHHHHH
Q psy9513 7 LHIMGIRN-F---PADKN-RVVRFQRPLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 7 l~i~~~~~-~---~~~~~-~~i~f~~~~~~i~G~NGaGKStl~~~i 47 (1491)
|.+.+.+. + ++..+ .+++|+..+++|+|||||||||+|++|
T Consensus 551 i~i~~~rHP~le~~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~i 596 (765)
T 1ewq_A 551 LQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQT 596 (765)
T ss_dssp EEEEEECCTTGGGTSCCCCEEEEESSCEEEEESCSSSSHHHHHHHH
T ss_pred EEEEEeECceEccCCceEeeeccCCCcEEEEECCCCCChHHHHHHH
Confidence 55555531 1 22334 889999339999999999999999999
No 214
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.00031 Score=74.43 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=29.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
+++|+|||||||||++++| .+.+++.. |.+.+.+..
T Consensus 24 ~i~i~G~~GsGKstl~~~l----~~~~~~~~--~~v~~~~~d 59 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQL----SQTLREQG--ISVCVFHMD 59 (201)
T ss_dssp EEEEEECTTSSHHHHHHHH----HHHHHHTT--CCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHhhcC--CeEEEeccC
Confidence 8999999999999999999 77666665 777665433
No 215
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.74 E-value=0.00045 Score=76.94 Aligned_cols=43 Identities=28% Similarity=0.500 Sum_probs=32.3
Q ss_pred ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 21 RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 21 ~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
..++|.++ -++|+||||||||||+++| +|...+ |.+.+.|..+
T Consensus 37 ~~~~l~~~~GvlL~Gp~GtGKTtLakal----a~~~~~----~~i~i~g~~l 80 (274)
T 2x8a_A 37 KALGLVTPAGVLLAGPPGCGKTLLAKAV----ANESGL----NFISVKGPEL 80 (274)
T ss_dssp HHTTCCCCSEEEEESSTTSCHHHHHHHH----HHHTTC----EEEEEETTTT
T ss_pred HHcCCCCCCeEEEECCCCCcHHHHHHHH----HHHcCC----CEEEEEcHHH
Confidence 44455544 4899999999999999999 776543 4577777666
No 216
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.74 E-value=0.00053 Score=75.46 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCeeEEcCCCCCCChHhH-----HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1247 HKALAETFSRNCGIFALDEPTTNLDIKNA-----SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1247 ~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-----~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
+++||++|..+|++|++|||| |+.+. ....|.++|++||+.+ +..++ |+++.+
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~~~g~~vl~t~H~~~-~~~~~----dri~~l 145 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT-AIDTI----HRIVDI 145 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEECCSS-HHHHH----HHHHHT
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHHccCCEEEEEeCcch-HHHHH----HHHhhh
Confidence 579999999999999999999 88876 2345889999999987 45666 666655
No 217
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.71 E-value=0.00043 Score=79.19 Aligned_cols=62 Identities=8% Similarity=0.017 Sum_probs=48.2
Q ss_pred HhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH---HhhcCceEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1243 IVRDHKALAETFSRNCGIFALDEPTTNLDIKNA---SDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1243 l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~---~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
-++||++||+||..+|++|+|||||+. ..... ....+.++|++||+.+ +...+ |+++.+..|
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~----dri~~l~~g 290 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-EAYDFYNVLCSGHKGTLTTLHAGS-SEEAF----IRLANMSSS 290 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-HHHHHHHHHHTTCCCEEEEEECSS-HHHHH----HHHHHHHHT
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-HHHHHHHHHhcCCCEEEEEEcccH-HHHHh----hhheehhcC
Confidence 478999999999999999999999983 11111 2333457999999988 66677 888888766
No 218
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.71 E-value=0.00093 Score=85.98 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=46.9
Q ss_pred hhhhhhhhHHHH-----hHHHHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hh-hcCceEEEEccCH
Q psy9513 1227 EFIENLTAIDRA-----YVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SD-QKNFQLIVITHDE 1290 (1491)
Q Consensus 1227 ~~~~~L~~~~~~-----~~~~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~-~~~~~~i~~thd~ 1290 (1491)
.++..++..++. .+..-|++++.++++ +.+|+++||||||+|||+... .. ..|.++|++|||.
T Consensus 718 ~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 718 GIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp EEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 344555554443 122337788888887 889999999999999999755 22 3589999999998
Q ss_pred HHHHHHh
Q psy9513 1291 EFIENLT 1297 (1491)
Q Consensus 1291 ~~~~~~~ 1297 (1491)
+++. ++
T Consensus 797 el~~-l~ 802 (918)
T 3thx_B 797 PVCE-LE 802 (918)
T ss_dssp GGGG-HH
T ss_pred HHHH-HH
Confidence 7664 44
No 219
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.69 E-value=0.0011 Score=75.15 Aligned_cols=45 Identities=13% Similarity=0.148 Sum_probs=29.8
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCC-ceEeeCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSG-KNFVHDPRI 71 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g-~~~~~~~~~ 71 (1491)
.+++|.++ +++|+||||||||||+.+| +|..+|.. | .+.+.+..+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~i----a~~~~~~~--G~~v~~~~~e~ 74 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQ----ALQWGTAM--GKKVGLAMLEE 74 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHH----HHHHHHTS--CCCEEEEESSS
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHH----HHHHHHHc--CCeEEEEeCcC
Confidence 44544443 8888888888888888888 66666665 5 554444333
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.66 E-value=0.0015 Score=71.21 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHhhcCCC--eeEEcCCCCCC--ChHhH----------HhhcCceEEEEccCH--------HHHHHHhccccceEEE
Q psy9513 1249 ALAETFSRNCG--IFALDEPTTNL--DIKNA----------SDQKNFQLIVITHDE--------EFIENLTAIDRAYVVR 1306 (1491)
Q Consensus 1249 ~~a~~~~~~~~--~l~lDEp~~~l--D~~~~----------~~~~~~~~i~~thd~--------~~~~~~~~~~~~~~~~ 1306 (1491)
..+.+...+|+ ++++||||+++ |+... ....|.++|++||+. ..+..+| |+++.
T Consensus 113 ~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~----d~vi~ 188 (235)
T 2w0m_A 113 VIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA----DGIIR 188 (235)
T ss_dssp HHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC----SEEEE
T ss_pred HHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee----eEEEE
Confidence 34444456899 99999999887 87554 234589999999998 4478888 99999
Q ss_pred EecC
Q psy9513 1307 IVRD 1310 (1491)
Q Consensus 1307 l~~~ 1310 (1491)
|...
T Consensus 189 l~~~ 192 (235)
T 2w0m_A 189 FRRM 192 (235)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 221
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.65 E-value=0.00073 Score=73.28 Aligned_cols=33 Identities=24% Similarity=0.307 Sum_probs=27.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .|. . |.+.+.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L----~~~----~--g~v~~~~~~~ 54 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHF----EKY----K--NDICLLTEPV 54 (230)
T ss_dssp EEEEECSTTSCHHHHHHTT----GGG----T--TTEEEECCTH
T ss_pred EEEEECCCCCCHHHHHHHH----Hhc----c--CCeEEEecCH
Confidence 9999999999999999999 775 4 7787776543
No 222
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.64 E-value=0.001 Score=87.25 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=32.4
Q ss_pred ceeeec-----c-ccc-CCCCc-ceEEeec----------cceEEEccCCCChhhHHHHHHh
Q psy9513 6 QLHIMG-----I-RNF-PADKN-RVVRFQR----------PLTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 6 ~l~i~~-----~-~~~-~~~~~-~~i~f~~----------~~~~i~G~NGaGKStl~~~i~~ 49 (1491)
.|.+.| + +.| ++..+ .+|+|++ .+++|+|||||||||+|++|..
T Consensus 750 ~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHHHH
Confidence 378888 6 467 44445 8899874 3999999999999999999943
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.64 E-value=0.00016 Score=84.60 Aligned_cols=58 Identities=7% Similarity=0.058 Sum_probs=46.7
Q ss_pred hhhHHHHHHHhhc----------CCCeeEEcCCCCCCChHhH---------H-----hhcC----ceEEEEccCHHH--H
Q psy9513 1244 VRDHKALAETFSR----------NCGIFALDEPTTNLDIKNA---------S-----DQKN----FQLIVITHDEEF--I 1293 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~----------~~~~l~lDEp~~~lD~~~~---------~-----~~~~----~~~i~~thd~~~--~ 1293 (1491)
++||++||++|+. +|++++|||||+|||+.+. . ...| .+|+++||+... +
T Consensus 161 ~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~ 240 (413)
T 1tq4_A 161 KKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDF 240 (413)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTH
T ss_pred cHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCH
Confidence 7899999999999 9999999999999999887 1 1222 457788998776 7
Q ss_pred HHHhccccceEE
Q psy9513 1294 ENLTAIDRAYVV 1305 (1491)
Q Consensus 1294 ~~~~~~~~~~~~ 1305 (1491)
..++ |++.
T Consensus 241 e~L~----d~I~ 248 (413)
T 1tq4_A 241 PVLM----DKLI 248 (413)
T ss_dssp HHHH----HHHH
T ss_pred HHHH----HHHH
Confidence 7777 6554
No 224
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.63 E-value=0.00065 Score=76.54 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++||+|||||||||++++|.-.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994333
No 225
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.62 E-value=0.00026 Score=73.60 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
.++|+||||||||||+.+| +|...|..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i----~~~~~~~~ 66 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVAT----LKAIYEKK 66 (180)
T ss_dssp EEEECCSSSSSHHHHHHHH----HHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHHHHc
Confidence 8999999999999999999 66665444
No 226
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.62 E-value=0.00044 Score=78.21 Aligned_cols=76 Identities=22% Similarity=0.185 Sum_probs=53.6
Q ss_pred ceEEEEccchhhhhhhhhHHHHhH---------------HH----H---------------hhhHHHHHHHhhcCCCeeE
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYV---------------VR----I---------------VRDHKALAETFSRNCGIFA 1262 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~---------------~~----l---------------~~~~~~~a~~~~~~~~~l~ 1262 (1491)
..++|||||+.+++. ++.++..+ .. + ++||+++|++++.+|+|||
T Consensus 121 ~~v~~v~qd~~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilI 199 (312)
T 3aez_A 121 PRVDLVTTDGFLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILI 199 (312)
T ss_dssp CCEEEEEGGGGBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEE
T ss_pred CeEEEEecCccCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEE
Confidence 469999999988776 65544210 00 0 6789999999999999999
Q ss_pred EcCCCCCCChHhH--HhhcCceEEEEccCHHHHH
Q psy9513 1263 LDEPTTNLDIKNA--SDQKNFQLIVITHDEEFIE 1294 (1491)
Q Consensus 1263 lDEp~~~lD~~~~--~~~~~~~~i~~thd~~~~~ 1294 (1491)
||||+..+|+... ...-++ .|+|+|+.+...
T Consensus 200 lDep~~~~d~~~~~l~~~~D~-~I~V~a~~~~~~ 232 (312)
T 3aez_A 200 LEGLNVLQTGPTLMVSDLFDF-SLYVDARIEDIE 232 (312)
T ss_dssp EECTTTTCCCSSCCGGGGCSE-EEEEEECHHHHH
T ss_pred ECCccccCCcchHHHHHhcCc-EEEEECCHHHHH
Confidence 9999999974222 222244 577788776643
No 227
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.61 E-value=0.00059 Score=71.70 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
.++|+||||||||||++++ .|...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l----~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRF----TRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHH----HHSCCC
T ss_pred EEEEECcCCCCHHHHHHHH----hcCCCC
Confidence 7899999999999999999 665443
No 228
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.54 E-value=0.00043 Score=77.82 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=42.5
Q ss_pred eeeecc-cccCCCCcceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC
Q psy9513 7 LHIMGI-RNFPADKNRVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG 72 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~ 72 (1491)
+.++++ ..|++.. .+++|+.+ +++|+|||||||||++..| +|.+++.. |.+.+.|.++.
T Consensus 77 ~~~~~l~~~~~~~~-~~i~~~~~~~i~i~g~~G~GKTT~~~~l----a~~~~~~~--~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEALGGEA-RLPVLKDRNLWFLVGLQGSGKTTTAAKL----ALYYKGKG--RRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHTTSSC-CCCCCCSSEEEEEECCTTTTHHHHHHHH----HHHHHHTT--CCEEEEECCSS
T ss_pred HHHHHHHHHHCCCC-ceeecCCCeEEEEECCCCCCHHHHHHHH----HHHHHHcC--CeEEEecCCcc
Confidence 345556 4665432 56677633 9999999999999999999 66656655 88888877663
No 229
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.52 E-value=0.00061 Score=79.74 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=24.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
.++|+||||||||||+++| +|.++|.+
T Consensus 172 k~~IvG~nGsGKSTLlk~L----~gl~~~~~ 198 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKL----AAVFNTTS 198 (365)
T ss_dssp EEEEECCTTSHHHHHHHHH----HHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHH----HHHhCCCc
Confidence 8999999999999999999 89887754
No 230
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.48 E-value=0.00068 Score=73.94 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=29.6
Q ss_pred eecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 25 FQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 25 f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+..+ +++|+||||||||||+.+| .|...+.. |.+.+.+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l----~~~~~~~~--~~v~~~~~~~ 61 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHF----IAKGLRDG--DPCIYVTTEE 61 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHH----HHHHHHHT--CCEEEEESSS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHH----HHHHHHCC--CeEEEEEccc
Confidence 3344 9999999999999999999 44444444 6666655433
No 231
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.47 E-value=0.00027 Score=81.54 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=33.1
Q ss_pred cceeeeccc-ccCCCCc-ceEEeec----------cceEEEccCCCChhhHHHHHHhhh
Q psy9513 5 DQLHIMGIR-NFPADKN-RVVRFQR----------PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 5 ~~l~i~~~~-~~~~~~~-~~i~f~~----------~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
..+..++|. .||+... ..+++.+ +.++|+||||||||||+++|.-.+
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346777774 5554333 5555543 379999999999999999994444
No 232
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.45 E-value=0.00026 Score=77.18 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=38.6
Q ss_pred hcCCCeeEEcCCCCCCChH---------------hH-------HhhcCceEEEEcc----CHHHHHHHhccccceEEEEe
Q psy9513 1255 SRNCGIFALDEPTTNLDIK---------------NA-------SDQKNFQLIVITH----DEEFIENLTAIDRAYVVRIV 1308 (1491)
Q Consensus 1255 ~~~~~~l~lDEp~~~lD~~---------------~~-------~~~~~~~~i~~th----d~~~~~~~~~~~~~~~~~l~ 1308 (1491)
..+|+++++||||+++|+. .. ....|.|||+||| +-..+..+| |+++.+.
T Consensus 123 ~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~----d~~l~l~ 198 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSA----TLRVYLR 198 (231)
T ss_dssp SSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CC----SEEEEEE
T ss_pred CCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhc----eEEEEEE
Confidence 3489999999999999873 11 2345899999999 555588888 9999998
Q ss_pred cCCCcc
Q psy9513 1309 RDHKGL 1314 (1491)
Q Consensus 1309 ~~~~~~ 1314 (1491)
++....
T Consensus 199 ~~~~~~ 204 (231)
T 4a74_A 199 KGKGGK 204 (231)
T ss_dssp ECTTSC
T ss_pred ecCCCe
Confidence 865443
No 233
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.40 E-value=0.00069 Score=86.37 Aligned_cols=76 Identities=13% Similarity=0.075 Sum_probs=45.5
Q ss_pred eEEEEccchhhhhhhhhHHHHhH--HHHh--hhHHHHHHHhhcCCCeeEEcCCCCCCChHhH----------Hhh-cCce
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV--VRIV--RDHKALAETFSRNCGIFALDEPTTNLDIKNA----------SDQ-KNFQ 1282 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~--~~l~--~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~----------~~~-~~~~ 1282 (1491)
.++++++ ++..++..+++.. ...+ ..+++.+..++.+|+++||||||+|+|+... ... .|.+
T Consensus 646 ~i~~~~~---i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~ 722 (800)
T 1wb9_A 646 EIGPIDR---IFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL 722 (800)
T ss_dssp EECCCCE---EEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE
T ss_pred cceeHHH---HHhhCCHHHHHHhhhhhhhHHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe
Confidence 4555544 5666666666422 1122 2234444455889999999999888776433 334 4899
Q ss_pred EEEEccCHHHHHHHh
Q psy9513 1283 LIVITHDEEFIENLT 1297 (1491)
Q Consensus 1283 ~i~~thd~~~~~~~~ 1297 (1491)
+|++|||.+++. +|
T Consensus 723 vl~~TH~~el~~-l~ 736 (800)
T 1wb9_A 723 TLFATHYFELTQ-LP 736 (800)
T ss_dssp EEEECSCGGGGG-HH
T ss_pred EEEEeCCHHHHH-Hh
Confidence 999999988764 66
No 234
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.40 E-value=0.00051 Score=74.76 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=27.2
Q ss_pred ceeeecc-c-cc-CCCCc-ceEEeecc------ceEEEccCCCChhhHHHHHHhhh
Q psy9513 6 QLHIMGI-R-NF-PADKN-RVVRFQRP------LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 6 ~l~i~~~-~-~~-~~~~~-~~i~f~~~------~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.|.+.|+ . +| ++..+ .+++|.+. +++|+||+||||||+.++|.-.|
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4778887 5 78 54445 78888753 89999999999999999994333
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.39 E-value=0.00097 Score=68.72 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+|||||||||+.++|
T Consensus 6 ~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 236
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.37 E-value=0.0012 Score=84.82 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.6
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHH
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~ 48 (1491)
.+|+|+++ +++|+|||||||||+|++|.
T Consensus 664 ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 664 NNTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred ccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 88999864 99999999999999999984
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.32 E-value=0.00083 Score=75.47 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=31.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG 72 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~ 72 (1491)
+++|+|||||||||++..| .|.+++.. |.+.+.+.+..
T Consensus 106 vi~ivG~~GsGKTTl~~~L----A~~l~~~g--~kV~lv~~D~~ 143 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKL----AKMFVDEG--KSVVLAAADTF 143 (306)
T ss_dssp EEEEECCTTSSHHHHHHHH----HHHHHHTT--CCEEEEEECTT
T ss_pred EEEEEcCCCChHHHHHHHH----HHHHHhcC--CEEEEEccccc
Confidence 9999999999999999999 66666655 77877765553
No 238
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.32 E-value=0.0016 Score=83.11 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=25.2
Q ss_pred ceEEeecc--ceEEEccCCCChhhHHHHHH
Q psy9513 21 RVVRFQRP--LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 21 ~~i~f~~~--~~~i~G~NGaGKStl~~~i~ 48 (1491)
.+++|+.+ +++|+|||||||||+|++|.
T Consensus 599 ndisl~~~g~i~~ItGpNGsGKSTlLr~ia 628 (800)
T 1wb9_A 599 NPLNLSPQRRMLIITGPNMGGKSTYMRQTA 628 (800)
T ss_dssp EEEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred ecccccCCCcEEEEECCCCCChHHHHHHHH
Confidence 88999833 99999999999999999994
No 239
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.30 E-value=0.0012 Score=68.23 Aligned_cols=33 Identities=15% Similarity=0.440 Sum_probs=25.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
+++|+|||||||||++++| .+.+ |.+++++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l----~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEV----AHQL------HAAFLDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHH----HHHH------TCEEEEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHH----HHhh------CcEEEeCccc
Confidence 8999999999999999999 5432 4556665444
No 240
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.29 E-value=0.00099 Score=75.57 Aligned_cols=47 Identities=26% Similarity=0.371 Sum_probs=36.1
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK 73 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~ 73 (1491)
.+++|..+ +++|+|||||||||++..| ++.+.+.. |.+.+.|.++.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~L----A~~l~~~g--~kVllid~D~~r 145 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKM----ANYYAELG--YKVLIAAADTFR 145 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHH----HHHHHHTT--CCEEEEECCCSC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHH----HHHHHHCC--CeEEEEeCCCcc
Confidence 35777543 9999999999999999999 55555555 788887766643
No 241
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.27 E-value=0.00039 Score=76.93 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=30.6
Q ss_pred ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 21 RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 21 ~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
.+++|.++ -++|+||||||||||+++| +|... . |.+.+++..
T Consensus 42 ~~~~~~~~~g~ll~G~~G~GKTtl~~~i----~~~~~--~--~~i~~~~~~ 84 (254)
T 1ixz_A 42 HEMGARIPKGVLLVGPPGVGKTHLARAV----AGEAR--V--PFITASGSD 84 (254)
T ss_dssp HHTTCCCCSEEEEECCTTSSHHHHHHHH----HHHTT--C--CEEEEEHHH
T ss_pred HHcCCCCCCeEEEECCCCCCHHHHHHHH----HHHhC--C--CEEEeeHHH
Confidence 45555554 5899999999999999999 55543 3 666666543
No 242
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.27 E-value=0.0015 Score=69.11 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=19.0
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHH
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~ 48 (1491)
.+|+|+.+ +++|+||+||||||+.++|.
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 77888864 89999999999999999993
No 243
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.26 E-value=0.002 Score=75.23 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=27.5
Q ss_pred ceEEeeccceEEEccCCCChhhHHHHHHhhhcC--CCCCCC
Q psy9513 21 RVVRFQRPLTLIVGENGCGKTTIIECIKFALTN--EYPQGA 59 (1491)
Q Consensus 21 ~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g--~~~~~~ 59 (1491)
..++++.|.++|||++|||||||+++| .| .+|+++
T Consensus 28 ~~i~~~lp~I~vvG~~~sGKSSLln~l----~g~~~lp~~~ 64 (360)
T 3t34_A 28 PTLWDSLPAIAVVGGQSSGKSSVLESI----VGKDFLPRGS 64 (360)
T ss_dssp ----CCCCEEEEECBTTSSHHHHHHHH----HTSCCSCCCS
T ss_pred ccccccCCEEEEECCCCCcHHHHHHHH----hCCCcCCCCC
Confidence 678999999999999999999999999 88 446555
No 244
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.25 E-value=0.0036 Score=70.31 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=55.4
Q ss_pred eEEEEccchhhhhhhhhHHHHhH------------------------HHHhhhHHHHHHHhhcCCC--eeEEcCCCCCCC
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV------------------------VRIVRDHKALAETFSRNCG--IFALDEPTTNLD 1271 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~------------------------~~l~~~~~~~a~~~~~~~~--~l~lDEp~~~lD 1271 (1491)
.++|++|++.+++.++..+++.+ ..++++|++||||++.+|+ +|.|| |+++.+
T Consensus 157 ~i~~v~q~~~~~p~~~v~~~v~~~~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 157 SIPVIQGPEGTDSAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp TCCEECCCTTCCHHHHHHHHHHHHHHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred CceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence 47899999888777777666522 2236789999999999999 67888 888877
Q ss_pred hHhH---H-hhcCceEEEEccCHH
Q psy9513 1272 IKNA---S-DQKNFQLIVITHDEE 1291 (1491)
Q Consensus 1272 ~~~~---~-~~~~~~~i~~thd~~ 1291 (1491)
.... . ...|.++|++||+..
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcc
Confidence 6555 2 234899999999743
No 245
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.22 E-value=0.0022 Score=82.88 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=25.0
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHH
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i 47 (1491)
.+++|+++ +++|+|||||||||+|++|
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 78999874 9999999999999999998
No 246
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.21 E-value=0.0022 Score=70.27 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=28.9
Q ss_pred eecc-ceEEEccCCCChhhHHHHHHhhhcCCCCC-----CCCCCceEeeCCC
Q psy9513 25 FQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQ-----GASSGKNFVHDPR 70 (1491)
Q Consensus 25 f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~-----~~~~g~~~~~~~~ 70 (1491)
|..+ +++|+||||||||||+.+|.... ..+| .. |.+++.+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~--~~~~~~g~~~~--~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC--QLPIDRGGGEG--KAMYIDTEG 68 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT--TSCGGGTCCSS--EEEEEESSS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH--hCchhcCCCCC--eEEEEECCC
Confidence 3344 99999999999999999993311 3444 22 566766544
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.20 E-value=0.00045 Score=77.54 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=30.5
Q ss_pred ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 21 RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 21 ~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
.+++|.++ -++|+||||||||||+++| .|..+ . |.+.+++..
T Consensus 66 ~~~~~~~~~gvll~Gp~GtGKTtl~~~i----~~~~~--~--~~i~~~~~~ 108 (278)
T 1iy2_A 66 HEMGARIPKGVLLVGPPGVGKTHLARAV----AGEAR--V--PFITASGSD 108 (278)
T ss_dssp HHTTCCCCCEEEEECCTTSSHHHHHHHH----HHHTT--C--CEEEEEHHH
T ss_pred HHcCCCCCCeEEEECCCcChHHHHHHHH----HHHcC--C--CEEEecHHH
Confidence 44555554 5899999999999999999 55543 3 667666543
No 248
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.0016 Score=71.93 Aligned_cols=52 Identities=13% Similarity=0.009 Sum_probs=37.4
Q ss_pred hcCCCeeEEcCCCCCCC-----hHhH---------HhhcCceEEEEccCHHHH---------HHH-hccccceEEEEecC
Q psy9513 1255 SRNCGIFALDEPTTNLD-----IKNA---------SDQKNFQLIVITHDEEFI---------ENL-TAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1255 ~~~~~~l~lDEp~~~lD-----~~~~---------~~~~~~~~i~~thd~~~~---------~~~-~~~~~~~~~~l~~~ 1310 (1491)
..+|+++++||||++|| +... ....|.|+|+|||+.+.+ ..+ | |+++.|...
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~a----D~vi~l~~~ 208 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIA----RGVIVLDLQ 208 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGC----SEEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEee----eEEEEEeee
Confidence 47899999999999997 3322 345699999999998887 333 4 888888643
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.09 E-value=0.0014 Score=69.31 Aligned_cols=19 Identities=21% Similarity=0.681 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||||||||||++++
T Consensus 7 kv~lvG~~g~GKSTLl~~l 25 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRF 25 (199)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6799999999999999999
No 250
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.08 E-value=0.0019 Score=74.21 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHhhcCCCeeEEcCCCCCCChHhH-----HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1249 ALAETFSRNCGIFALDEPTTNLDIKNA-----SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1249 ~~a~~~~~~~~~l~lDEp~~~lD~~~~-----~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
+||+||.++|++|++|||| |+.+. ....|.++|++||+.+.+ .++ |+++.|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~-~~~----dRli~l 243 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAA-KTI----DRVVDV 243 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHH-HHH----HHHHHT
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHH-HHH----HHHhhh
Confidence 9999999999999999999 67665 345689999999999987 567 777766
No 251
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.08 E-value=0.0022 Score=75.22 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=27.5
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.+|+|.++ .++|||||||||||||++| +|..|
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~L----sg~~~ 182 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAM----TRAHP 182 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHH----CSSCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHH----HcCCc
Confidence 57788775 8999999999999999999 77643
No 252
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.05 E-value=0.0021 Score=74.50 Aligned_cols=19 Identities=42% Similarity=0.496 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||||||||||+++|
T Consensus 22 ~vgiVG~pnaGKSTL~n~L 40 (392)
T 1ni3_A 22 KTGIVGMPNVGKSTFFRAI 40 (392)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 253
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.04 E-value=0.0017 Score=75.06 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=29.6
Q ss_pred ccceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 27 RPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 27 ~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
.++++|+||+|||||||+++| .|..++.. |.+.+.+.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L----~~~~~~~~--~~v~V~~~dp 112 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYF----GKMLTERG--HKLSVLAVDP 112 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHH----HHHHHHTT--CCEEEEECCC
T ss_pred ceEEEEEcCCCCCHHHHHHHH----HHHhhhcC--CeEEEEeecC
Confidence 348999999999999999999 66665555 6665554433
No 254
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.99 E-value=0.0027 Score=73.26 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=28.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCC--CCCC--CCCc-eEeeCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEY--PQGA--SSGK-NFVHDPR 70 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~--~~~~--~~g~-~~~~~~~ 70 (1491)
+++|+||||||||||+..| .|.. ||.. ..|. +++++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l----~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTL----AVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHH----HHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHH----HHHhccchhcCCCCCeEEEEeCCC
Confidence 9999999999999999999 5544 4443 0256 6777654
No 255
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.88 E-value=0.0019 Score=78.75 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCC-ceE-eeC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSG-KNF-VHD 68 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g-~~~-~~~ 68 (1491)
+++|+||||||||||+++| .|.++|.+ | .+. ++|
T Consensus 371 iI~LiG~sGSGKSTLar~L----a~~L~~~~--G~~i~~lDg 406 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARAL----AARLMEMG--GRCVTLLDG 406 (552)
T ss_dssp EEEEEESSCHHHHHHHHHH----HHHHHTTC--SSCEEEESS
T ss_pred EEEEECCCCChHHHHHHHH----HHhhcccC--CceEEEECC
Confidence 8999999999999999999 88877765 5 564 554
No 256
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.86 E-value=0.0022 Score=71.89 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=27.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCC-ceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSG-KNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g-~~~~~~~~~ 71 (1491)
+++|+|||||||||++..| ++.+.+.. | .+.+-+.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~L----A~~l~~~~--G~~V~lv~~D~ 144 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKL----AAISMLEK--HKKIAFITTDT 144 (296)
T ss_dssp EEEEEESTTSSHHHHHHHH----HHHHHHTT--CCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHHHhc--CCEEEEEecCc
Confidence 9999999999999999999 55555544 5 555544444
No 257
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.76 E-value=0.00053 Score=79.13 Aligned_cols=55 Identities=15% Similarity=0.012 Sum_probs=34.7
Q ss_pred eeeecc-cccCCCCc-ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEee
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~ 67 (1491)
+...+. +.|+.... ..++|..+ +++|+|||||||||++.+| +|.+++.. |.+.+-
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l----~~~~~~~~--~~v~v~ 90 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAF----GMLLIREG--LKVAVI 90 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHH----HHHHHHTT--CCEEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHH----HHHHHhcC--CeEEEE
Confidence 344444 34443233 45666543 8999999999999999999 44444443 444443
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.71 E-value=0.0096 Score=63.89 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=48.5
Q ss_pred hhHHHHHHHhhcC-CCeeEEcCCCCCCChHh-----------H-------HhhcCceEEEEccCHH-------------H
Q psy9513 1245 RDHKALAETFSRN-CGIFALDEPTTNLDIKN-----------A-------SDQKNFQLIVITHDEE-------------F 1292 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~-~~~l~lDEp~~~lD~~~-----------~-------~~~~~~~~i~~thd~~-------------~ 1292 (1491)
+++++.+++++.. |+++++||||+++|+.. . ....|.++|+++|... .
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~ 171 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQT 171 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHH
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcc
Confidence 4567788888875 99999999999998631 1 2334899999999754 5
Q ss_pred HHHHhccccceEEEEecC
Q psy9513 1293 IENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1293 ~~~~~~~~~~~~~~l~~~ 1310 (1491)
+..+| |.++.|...
T Consensus 172 ~~~~~----d~vi~l~~~ 185 (220)
T 2cvh_A 172 LGYRC----KDILRLDKL 185 (220)
T ss_dssp HHHTS----SEEEEEEEC
T ss_pred eeecC----cEEEEEEEe
Confidence 67788 999999876
No 259
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.70 E-value=0.0038 Score=66.34 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+|||||||||+.++|
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 260
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=95.68 E-value=0.039 Score=51.44 Aligned_cols=82 Identities=12% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccccccCCCCCchhhHHHHHHHHhhhchhhhhhhHHHHHHHH
Q psy9513 667 DRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLCTRFFESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLC 746 (1491)
Q Consensus 667 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~~l~~~~~~~~~~~~~~~~l~ 746 (1491)
..+..++..+......+......+...+..+...+..||+||..+++. .....+......+..+...+..+...+..+.
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~-~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDE-HREELLSKYHLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444555555556666655457799999977643 1223344444444444444444444444443
Q ss_pred HHH
Q psy9513 747 KQQ 749 (1491)
Q Consensus 747 ~~~ 749 (1491)
..+
T Consensus 92 ~~~ 94 (112)
T 1l8d_A 92 REL 94 (112)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 261
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.66 E-value=0.0035 Score=70.27 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=11.7
Q ss_pred HHhhcCCCeeEEcCCCC--CCCh
Q psy9513 1252 ETFSRNCGIFALDEPTT--NLDI 1272 (1491)
Q Consensus 1252 ~~~~~~~~~l~lDEp~~--~lD~ 1272 (1491)
++++.+|+++++||||+ ++|+
T Consensus 128 ~~l~~~~~livlDe~~~~~~~d~ 150 (279)
T 1nlf_A 128 KRAAEGRRLMVLDTLRRFHIEEE 150 (279)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCT
T ss_pred HHhcCCCCEEEECCHHHhcCCCc
Confidence 34445566666666665 5554
No 262
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.56 E-value=0.001 Score=73.65 Aligned_cols=70 Identities=9% Similarity=0.070 Sum_probs=47.7
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH--------------------------HH---hhhHHHHHHHhhcCCCeeEEcCCC
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV--------------------------RI---VRDHKALAETFSRNCGIFALDEPT 1267 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~--------------------------~l---~~~~~~~a~~~~~~~~~l~lDEp~ 1267 (1491)
..++|+||++.+++.|++.++..++ .+ ++||+++|||++. +++||||+
T Consensus 47 ~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~ 123 (270)
T 3sop_A 47 KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTG 123 (270)
T ss_dssp CEEEESCC----CCEEEEECCCC--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCS
T ss_pred eeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCC
Confidence 4689999999888888766553211 11 5789999998865 99999999
Q ss_pred CCCChHhH-----HhhcCceEEEEccCH
Q psy9513 1268 TNLDIKNA-----SDQKNFQLIVITHDE 1290 (1491)
Q Consensus 1268 ~~lD~~~~-----~~~~~~~~i~~thd~ 1290 (1491)
.+||+... .... .++|+|.|..
T Consensus 124 ~gL~~lD~~~l~~L~~~-~~vI~Vi~K~ 150 (270)
T 3sop_A 124 HSLRPLDLEFMKHLSKV-VNIIPVIAKA 150 (270)
T ss_dssp SSCCHHHHHHHHHHHTT-SEEEEEETTG
T ss_pred CcCCHHHHHHHHHHHhc-CcEEEEEecc
Confidence 99998776 2333 7777776643
No 263
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.0039 Score=72.80 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=24.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcC-CCCCCCCCCceEeeCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTN-EYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g-~~~~~~~~g~~~~~~~~~ 71 (1491)
.++|+||||+||||++++| .| ..+|.. |.++++|..+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~l----a~~l~~~~~--g~i~~~~~~~ 75 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMAL----LESIFGPGV--YRLKIDVRQF 75 (354)
T ss_dssp CEEEECSTTSSHHHHHHTH----HHHHSCTTC--CC--------
T ss_pred eEEEECCCCCCHHHHHHHH----HHHHcCCCC--CeEEecceee
Confidence 5899999999999999999 66 456666 8877776544
No 264
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.46 E-value=0.0052 Score=65.17 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+|||||||||+.++|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5899999999999999999
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.44 E-value=0.007 Score=70.65 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=27.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC---CCCceEeeCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA---SSGKNFVHDPR 70 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~---~~g~~~~~~~~ 70 (1491)
+++|+||||||||||+..| ++.+..|+.. ..+.+++.+..
T Consensus 180 i~~I~G~sGsGKTTLl~~l--a~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTL--AVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHH--HHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHH--HHHhccCcccCCCCCcEEEEeCCC
Confidence 9999999999999999955 2246666532 01356666644
No 266
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.43 E-value=1.9 Score=62.66 Aligned_cols=73 Identities=10% Similarity=0.046 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy9513 323 AELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNL 395 (1491)
Q Consensus 323 ~el~~~l~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l 395 (1491)
..+..+++.++.++.....++...+..+..++.++..++.+......+...++.+.+..+..+......+..|
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455556666665555555666666666655555555555555555555555555554444444444444444
No 267
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.38 E-value=0.0057 Score=66.11 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.+.|
T Consensus 7 ~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 268
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.37 E-value=0.0041 Score=71.87 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=22.8
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHH
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i 47 (1491)
.+++|.++ +++|+|||||||||++++|
T Consensus 160 ~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l 189 (377)
T 1svm_A 160 KCMVYNIPKKRYWLFKGPIDSGKTTLAAAL 189 (377)
T ss_dssp HHHHHCCTTCCEEEEECSTTSSHHHHHHHH
T ss_pred HhcccccCCCCEEEEECCCCCCHHHHHHHH
Confidence 44555554 9999999999999999999
No 269
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.0064 Score=64.57 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
+++|+||+||||||+.++| .+.+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L----~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNL----QKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHH----HTTS
T ss_pred EEEEECCCCCCHHHHHHHH----HHhc
Confidence 8999999999999999999 6654
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.31 E-value=0.0049 Score=62.82 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.5
Q ss_pred ccceEEEccCCCChhhHHHHH
Q psy9513 27 RPLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 27 ~~~~~i~G~NGaGKStl~~~i 47 (1491)
.++++|+||+||||||++..|
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHH
Confidence 458999999999999999999
No 271
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.29 E-value=0.0062 Score=71.35 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=38.6
Q ss_pred cccCCCCcceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCCC
Q psy9513 13 RNFPADKNRVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGK 73 (1491)
Q Consensus 13 ~~~~~~~~~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~~ 73 (1491)
+.|++.. .+++|..+ +++|+|||||||||++..| ++.+.+.. |.+.+.+.++.+
T Consensus 84 ~~~~~~~-~~i~l~~~~vi~i~G~~GsGKTT~~~~L----A~~l~~~g--~~Vllvd~D~~r 138 (425)
T 2ffh_A 84 EALGGEA-RLPVLKDRNLWFLVGLQGSGKTTTAAKL----ALYYKGKG--RRPLLVAADTQR 138 (425)
T ss_dssp HHTTSSC-CCCCCCSSEEEEEECCTTSSHHHHHHHH----HHHHHTTT--CCEEEEECCSSC
T ss_pred HHhCCCc-ccccCCCCeEEEEECCCCCCHHHHHHHH----HHHHHHcC--CeEEEeeccccC
Confidence 3566432 45666633 9999999999999999999 55445555 778877766643
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.28 E-value=0.0039 Score=69.87 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=37.7
Q ss_pred ecc-cccCCCCcce-EEeecc--ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCCC
Q psy9513 10 MGI-RNFPADKNRV-VRFQRP--LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIG 72 (1491)
Q Consensus 10 ~~~-~~~~~~~~~~-i~f~~~--~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~~ 72 (1491)
.++ +.|++.. .+ ++|..+ +++|+||||+||||++..|...+ ++.. |.+.+.+.++.
T Consensus 78 ~~l~~~~~~~~-~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~----~~~g--~~v~l~~~D~~ 137 (297)
T 1j8m_F 78 DELSNLFGGDK-EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFY----KKKG--FKVGLVGADVY 137 (297)
T ss_dssp HHHHHHTTCSC-CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHH----HHTT--CCEEEEECCCS
T ss_pred HHHHHHhcccc-ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH----HHCC--CeEEEEecCCC
Confidence 344 3565432 34 666543 99999999999999999994444 4444 67777666653
No 273
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.18 E-value=0.0073 Score=63.94 Aligned_cols=19 Identities=32% Similarity=0.604 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+|||||||.+.|
T Consensus 14 ~i~l~G~sGsGKsTl~~~L 32 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKV 32 (204)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 274
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.16 E-value=0.0039 Score=72.28 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=27.6
Q ss_pred eeeecc-cccCCCCc-ceEEeeccceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 7 LHIMGI-RNFPADKN-RVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 7 l~i~~~-~~~~~~~~-~~i~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
+.+.++ ..|+.... .+++|. ++|+|++|+|||||+++| +|..++
T Consensus 18 v~~~~l~~~~~~k~~~~~~~~~---I~vvG~~g~GKSTLln~L----~~~~~~ 63 (361)
T 2qag_A 18 VGFANLPNQVHRKSVKKGFEFT---LMVVGESGLGKSTLINSL----FLTDLY 63 (361)
T ss_dssp ---CCHHHHHHTHHHHHCCEEC---EEECCCTTSCHHHHHHHH----TTCCC-
T ss_pred EEeccchHHhCCeeecCCCCEE---EEEEcCCCCCHHHHHHHH----hCCCCC
Confidence 445555 34543333 445554 489999999999999998 765433
No 275
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.14 E-value=0.0016 Score=81.23 Aligned_cols=77 Identities=10% Similarity=0.050 Sum_probs=51.6
Q ss_pred ceEEEEccchhhhhhhhhHHHHhHH-HH--------hhhHHHHHHHhhcCCCeeEEcCC------CCCCChHhH------
Q psy9513 1217 FQLIVITHDEEFIENLTAIDRAYVV-RI--------VRDHKALAETFSRNCGIFALDEP------TTNLDIKNA------ 1275 (1491)
Q Consensus 1217 ~~l~~i~~~~~~~~~L~~~~~~~~~-~l--------~~~~~~~a~~~~~~~~~l~lDEp------~~~lD~~~~------ 1275 (1491)
..+||+||++.|++.+++.+++... .. ..+.+.++.+....|+++++||| |+|||+...
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~l 176 (608)
T 3szr_A 97 GKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTL 176 (608)
T ss_dssp EEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHH
T ss_pred eEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHH
Confidence 4689999999999999999987432 11 22333333344557999999999 999998876
Q ss_pred ---H--hhcCceEEEEccCHHHH
Q psy9513 1276 ---S--DQKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1276 ---~--~~~~~~~i~~thd~~~~ 1293 (1491)
. ...+.+++++|||.+++
T Consensus 177 i~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 177 IKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp HHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHhcCCCCceEEEeccchhc
Confidence 1 12367788899987743
No 276
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.12 E-value=3 Score=41.65 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy9513 885 QSLQKQKND 893 (1491)
Q Consensus 885 ~~l~~~~~~ 893 (1491)
..++..+.+
T Consensus 27 ~~le~El~E 35 (189)
T 2v71_A 27 QEARDELVE 35 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 277
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.11 E-value=2.3 Score=61.65 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhc
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALT 52 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~ 52 (1491)
-+.||||.||||||+++.|.=+|.
T Consensus 908 GvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 908 GVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999987774
No 278
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.11 E-value=0.0074 Score=64.80 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.3
Q ss_pred eecc-ceEEEccCCCChhhHHHHH
Q psy9513 25 FQRP-LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 25 f~~~-~~~i~G~NGaGKStl~~~i 47 (1491)
|..+ +++|+||||||||||+..|
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHH
Confidence 3444 9999999999999999999
No 279
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.09 E-value=0.0083 Score=61.69 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=17.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||+|||||||++.|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L 21 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKL 21 (186)
T ss_dssp CEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3679999999999999998
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.08 E-value=0.011 Score=60.21 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|++|+|||||+.++
T Consensus 5 ~v~lvG~~gvGKStL~~~l 23 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNAL 23 (165)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 281
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.04 E-value=0.0097 Score=64.06 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=24.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEee
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~ 67 (1491)
+++|.||+||||||+++.| ...+++ . +.+...
T Consensus 28 ~i~i~G~~GsGKsT~~~~l----~~~l~~-~--~~~~~~ 59 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEV----YHRLVK-D--YDVIMT 59 (229)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHHHTT-T--SCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHH----HHHHhc-C--CCceee
Confidence 8999999999999999999 554444 4 555443
No 282
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.02 E-value=0.0086 Score=63.28 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=18.9
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+||||||+.+.|.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999993
No 283
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.95 E-value=0.0022 Score=73.97 Aligned_cols=50 Identities=12% Similarity=0.042 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhh-------cCCCeeEEcCCCCCCChHh------------H----------HhhcCceEEEEccCHHHH
Q psy9513 1244 VRDHKALAETFS-------RNCGIFALDEPTTNLDIKN------------A----------SDQKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1244 ~~~~~~~a~~~~-------~~~~~l~lDEp~~~lD~~~------------~----------~~~~~~~~i~~thd~~~~ 1293 (1491)
..+++.++++++ .+|++|++||||++||+.. . ....|.++|+++|+....
T Consensus 211 ~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~ 289 (349)
T 1pzn_A 211 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARP 289 (349)
T ss_dssp HHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccccc
Confidence 356677888888 6899999999999998852 1 223589999999976543
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.89 E-value=0.011 Score=61.42 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEeecc---ceEEEccCCCChhhHHHHHHhh
Q psy9513 22 VVRFQRP---LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 22 ~i~f~~~---~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+++|..+ +++|+||+||||||+.++|.-.
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4566653 8999999999999999999443
No 285
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.86 E-value=1.8 Score=41.99 Aligned_cols=43 Identities=12% Similarity=0.069 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 852 VLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDI 894 (1491)
Q Consensus 852 l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l 894 (1491)
+.+...++...+..++.....++..+..+......++..+..+
T Consensus 32 lkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 32 LRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443333
No 286
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.83 E-value=0.0066 Score=62.92 Aligned_cols=57 Identities=9% Similarity=0.129 Sum_probs=37.4
Q ss_pred HhhcCCCeeEEcC--CCCCCChHhH-----HhhcCceEEE----EccCH--HHHHHHhccccceEEEEec
Q psy9513 1253 TFSRNCGIFALDE--PTTNLDIKNA-----SDQKNFQLIV----ITHDE--EFIENLTAIDRAYVVRIVR 1309 (1491)
Q Consensus 1253 ~~~~~~~~l~lDE--p~~~lD~~~~-----~~~~~~~~i~----~thd~--~~~~~~~~~~~~~~~~l~~ 1309 (1491)
|++.+|++||||| |+.++|+... ......++|+ ||||. .|+.+++...--+++.++.
T Consensus 101 A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~ 170 (189)
T 2i3b_A 101 SSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTK 170 (189)
T ss_dssp CCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCS
T ss_pred hhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHHeecCCcEEEEeCh
Confidence 5788999999999 8988987766 2223334443 34986 7888887321015665543
No 287
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.82 E-value=1.7 Score=42.22 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 861 NELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQL 899 (1491)
Q Consensus 861 ~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~~l~~~~~ 899 (1491)
..+..++..+..+..+++.....+..+......+.+.+.
T Consensus 90 e~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 90 EMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443
No 288
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.71 E-value=0.011 Score=66.84 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred eeccceEEEccCCCChhhHHHHH
Q psy9513 25 FQRPLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 25 f~~~~~~i~G~NGaGKStl~~~i 47 (1491)
|..++++|+|++|||||||+++|
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L 28 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKL 28 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHH
Confidence 34458999999999999999999
No 289
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=94.64 E-value=0.011 Score=71.16 Aligned_cols=43 Identities=21% Similarity=0.251 Sum_probs=31.0
Q ss_pred ceEEeecc-ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 21 RVVRFQRP-LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 21 ~~i~f~~~-~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
.+++|.++ -++|+||||||||||+++| .|... . +.+.+++..+
T Consensus 57 ~~lg~~ip~GvLL~GppGtGKTtLaraI----a~~~~--~--~~i~i~g~~~ 100 (499)
T 2dhr_A 57 HEMGARIPKGVLLVGPPGVGKTHLARAV----AGEAR--V--PFITASGSDF 100 (499)
T ss_dssp TTTSCCCCSEEEEECSSSSSHHHHHHHH----HHHTT--C--CEEEEEGGGG
T ss_pred hhccCCCCceEEEECCCCCCHHHHHHHH----HHHhC--C--CEEEEehhHH
Confidence 34455554 5889999999999999999 55442 3 6667776554
No 290
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.64 E-value=0.012 Score=67.93 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.8
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
++++|+|++|||||||+++| +|...
T Consensus 180 ~~V~lvG~~naGKSTLln~L----~~~~~ 204 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSL----TGLTQ 204 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHH----HCC--
T ss_pred cEEEEECCCCCCHHHHHHHH----HCCCc
Confidence 36899999999999999999 66654
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.63 E-value=0.0065 Score=67.81 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||+|||||||.+.|.-.|
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994333
No 292
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.63 E-value=0.0087 Score=62.26 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+|++||||||+.++|
T Consensus 15 ~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 8899999999999999999
No 293
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=94.58 E-value=2.5 Score=38.00 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9513 820 QNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKN 892 (1491)
Q Consensus 820 ~l~~~~~~l~~~i~~le~~l~~~~~~~~~~~~l~~el~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~l~~~~~ 892 (1491)
.+..+...++.++++.+.++.-. ...+.+-+...+.++.+-...+.++..++.++..++..++..+..++
T Consensus 15 ~L~~D~~s~~~eleEnqeEL~iV---gkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lk 84 (167)
T 4gkw_A 15 DLKQDTESLQKQLEENQEELEIV---GNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLK 84 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444444444321 11222223333444444444444444444444444544444444443
No 294
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.50 E-value=0.011 Score=59.57 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=21.1
Q ss_pred ccceEEEccCCCChhhHHHHHHhhh
Q psy9513 27 RPLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 27 ~~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++++|+|++||||||++..|.-.|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3589999999999999999994444
No 295
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.50 E-value=0.0057 Score=65.21 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
+++|+|++||||||+.+.| .+.++|..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l----~~~l~~~~ 53 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVEL----EHQLVRDR 53 (211)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH----HHHhcccc
Confidence 8999999999999999999 55554443
No 296
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.47 E-value=0.015 Score=60.07 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
+++|+|++||||||+.++| .+.+++
T Consensus 7 ~i~l~G~~GsGKST~~~~L----~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMAL----EEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHHHHHHHH----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH----HHHHhh
Confidence 7899999999999999999 555444
No 297
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.44 E-value=0.017 Score=59.15 Aligned_cols=19 Identities=21% Similarity=0.587 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|++|+|||||++++
T Consensus 6 ki~ivG~~g~GKStLl~~l 24 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNAL 24 (172)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 298
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.44 E-value=0.015 Score=59.52 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+||||||+.+.|.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999993
No 299
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.39 E-value=0.017 Score=59.93 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
-++|+|++|||||||+..+ .|.
T Consensus 4 kv~ivG~~gvGKStLl~~l----~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQL----MKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHH----TCC
T ss_pred EEEEECCCCCCHHHHHHHH----hcC
Confidence 4789999999999999999 664
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.32 E-value=0.016 Score=59.50 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 301
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.17 E-value=0.019 Score=65.65 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=25.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCce-EeeCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKN-FVHDP 69 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~-~~~~~ 69 (1491)
++.|+||||||||||+.++. +...+.. |.+ ++.+.
T Consensus 63 i~~I~GppGsGKSTLal~la----~~~~~~g--g~VlyId~E 98 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAI----AEAQKMG--GVAAFIDAE 98 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHH----HHHHHTT--CCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHH----HHHHhcC--CeEEEEecc
Confidence 99999999999999999994 3333333 554 55544
No 302
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=94.06 E-value=0.023 Score=68.10 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.++|+|+||||||||+++| .|..
T Consensus 182 kvaivG~~gvGKSTLln~l----~g~~ 204 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAI----LNKE 204 (439)
T ss_dssp EEEEECSTTSSHHHHHHHH----HTST
T ss_pred eEEEECCCCCCHHHHHHHH----hCCc
Confidence 7899999999999999999 6654
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.04 E-value=0.02 Score=59.52 Aligned_cols=19 Identities=26% Similarity=0.550 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|++|+|||||++++
T Consensus 9 ~i~lvG~~gvGKStL~~~l 27 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNAL 27 (188)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 304
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.02 E-value=0.02 Score=62.74 Aligned_cols=20 Identities=40% Similarity=0.464 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+|||||||..+|.
T Consensus 3 li~I~G~~GSGKSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 67899999999999999993
No 305
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.00 E-value=0.02 Score=66.12 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=19.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
.++|||+||+|||||+++| +|.
T Consensus 24 kvgIVG~pnvGKSTL~n~L----tg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVL----TNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHH----HC-
T ss_pred EEEEECCCCCCHHHHHHHH----HCC
Confidence 7899999999999999999 775
No 306
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.97 E-value=0.021 Score=58.56 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+||||||+.++|.-.|
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68899999999999999994333
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.93 E-value=0.022 Score=58.64 Aligned_cols=20 Identities=25% Similarity=0.778 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+||||||+.++|.
T Consensus 5 ~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999993
No 308
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.91 E-value=0.022 Score=62.27 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=19.2
Q ss_pred eecc-ceEEEccCCCChhhHHHHH
Q psy9513 25 FQRP-LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 25 f~~~-~~~i~G~NGaGKStl~~~i 47 (1491)
|..+ +++|+|||||||||++..+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHH
Confidence 4444 9999999999999996655
No 309
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.85 E-value=0.023 Score=60.63 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||+||||||+.++|.-.|
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994333
No 310
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.84 E-value=0.028 Score=61.16 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=22.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGA 59 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~ 59 (1491)
-++|+|++|+|||||+++| .|...+.+
T Consensus 31 ~i~lvG~~g~GKStlin~l----~g~~~~~~ 57 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSI----LGRKVFHS 57 (239)
T ss_dssp EEEEECCTTSSHHHHHHHH----HTSCCSCC
T ss_pred EEEEECCCCCCHHHHHHHH----cCCCcCcc
Confidence 7899999999999999999 77655443
No 311
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.78 E-value=0.024 Score=58.85 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999994
No 312
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.74 E-value=0.03 Score=70.01 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=33.9
Q ss_pred ceEEeecc---ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCCC
Q psy9513 21 RVVRFQRP---LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71 (1491)
Q Consensus 21 ~~i~f~~~---~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~~ 71 (1491)
..+++.+. .++|+|||||||||++++| .|..++.. .|.+++.+...
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~i----a~~l~~~~-~~~~~~~~~~~ 99 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAM----AELLPTET-LEDILVFPNPE 99 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHH----HHTSCCSS-CEEEEEECCTT
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHH----hccCCccc-CCeEEEeCCcc
Confidence 45555543 8999999999999999999 88777765 25555555443
No 313
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.70 E-value=0.025 Score=58.28 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.+.|
T Consensus 4 ~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 6899999999999999999
No 314
>3nwc_A SMC protein; structural maintenance of chromosomes (SMC), SMC hinge domai dimerization, DNA binding, cell cycle; 1.70A {Pyrococcus furiosus}
Probab=93.70 E-value=2.3e-05 Score=80.77 Aligned_cols=131 Identities=9% Similarity=0.088 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHhcCC-----CCchh-hHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q psy9513 555 TLAEIKSLKNRKESK-LADINLLKERHDRAFHLLFDM-----IPEEN-FKNSLDKALSSITFDINRI-----QEDINAKE 622 (1491)
Q Consensus 555 ~~~~l~~l~~~~~~~-~~~v~~~~~~~~~~l~~i~g~-----~~~~~-~~~aie~~L~~~~~~i~~~-----~~~i~~lk 622 (1491)
..++++.++++.+.. ...++.++.. .+.|++|. .+++. |..|++.+||+..+.+++. ..+|++++
T Consensus 6 ~~~r~~~l~~~~~~~~~~~v~~l~~~---~~~gv~G~l~dLi~V~~~kye~Ave~aLG~~l~~iVVd~~~~A~~~i~~Lk 82 (189)
T 3nwc_A 6 SERELIAAEAQREVRGNRAAEELKRS---GIGGIYGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLK 82 (189)
T ss_dssp HHHHHHHHHHHHHHSSCTHHHHHTTS---CCCSEEEEHHHHCEESCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhc---CCCCceEEHHHheeeChhhHHHHHHHHhccccccEEECCHHHHHHHHHHHH
Confidence 345555565555443 5566666521 25667772 56666 9999999999988888764 44789998
Q ss_pred HH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhc
Q psy9513 623 KH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEEN 700 (1491)
Q Consensus 623 ~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 700 (1491)
+. .||++| |++.++. .. +....|+. +.+++++++++..+..++++.+.++++++.|....
T Consensus 83 ~~~~GRatflpl~~i~~------~~-------~~~~~g~~--a~dlv~~d~~~~~a~~~llg~tlvv~dl~~A~~l~--- 144 (189)
T 3nwc_A 83 EHKLGRLTFLPLNKIKP------KH-------VDSSVGLP--AVDVIEYDQKIENAVKFALGDTVIVNSMEEARPHI--- 144 (189)
T ss_dssp HTTCCCCCEEETTTCCC------CC-------CCSCSSEE--GGGGEECCGGGHHHHHHHHTTEEEESCSGGGGGGT---
T ss_pred hcCCCceEEEECCcccc------cc-------CCCCCCcE--EeeeeccCHHHHHHHHHHhCCEEEECCHHHHHHHh---
Confidence 87 999999 9987643 11 01112222 34577788899999999999999999998887662
Q ss_pred CCCCccc
Q psy9513 701 EPRCPLC 707 (1491)
Q Consensus 701 ~~~~~~~ 707 (1491)
+++++|
T Consensus 145 -~~~r~V 150 (189)
T 3nwc_A 145 -GKVRMV 150 (189)
T ss_dssp -TTSEEE
T ss_pred -CCCeEE
Confidence 356666
No 315
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.67 E-value=0.015 Score=61.07 Aligned_cols=27 Identities=19% Similarity=0.440 Sum_probs=22.3
Q ss_pred ceEEeecc--ceEEEccCCCChhhHHHHH
Q psy9513 21 RVVRFQRP--LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 21 ~~i~f~~~--~~~i~G~NGaGKStl~~~i 47 (1491)
..++|..+ -++|+|++|||||||+.++
T Consensus 17 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l 45 (198)
T 1f6b_A 17 QFLGLYKKTGKLVFLGLDNAGKTTLLHML 45 (198)
T ss_dssp HHHTCTTCCEEEEEEEETTSSHHHHHHHH
T ss_pred HHhhccCCCcEEEEECCCCCCHHHHHHHH
Confidence 45555544 7899999999999999999
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.65 E-value=0.014 Score=71.73 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=25.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEee
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~ 67 (1491)
+++|+||||||||||+++| .+.+.+.. |.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~i----a~~l~~~~--~~i~~~ 142 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSI----AKSLGRKF--VRISLG 142 (543)
T ss_dssp EEEEESSSSSSHHHHHHHH----HHHHTCEE--EEECCC
T ss_pred EEEEECCCCCCHHHHHHHH----HHhcCCCe--EEEEec
Confidence 8999999999999999999 55544443 544433
No 317
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.61 E-value=0.023 Score=67.05 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=27.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEeeCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPR 70 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~~~~ 70 (1491)
.++|+||+||||||++..+ .+...+.. +.+++.|+.
T Consensus 37 ~~~i~G~~G~GKs~~~~~~----~~~~~~~~--~~~~~~D~~ 72 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKML----LLREYMQG--SRVIIIDPE 72 (392)
T ss_dssp CEEEECCTTSSHHHHHHHH----HHHHHTTT--CCEEEEESS
T ss_pred ceEEEcCCCCCHHHHHHHH----HHHHHHCC--CEEEEEeCC
Confidence 8899999999999999999 44333444 667776653
No 318
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.61 E-value=0.0088 Score=70.16 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=43.6
Q ss_pred eEEEEccchhhhhhhhhHHHHhH---------------------HHHhhhHHHHHHHhhcCCC---eeEEcCCC-CCCCh
Q psy9513 1218 QLIVITHDEEFIENLTAIDRAYV---------------------VRIVRDHKALAETFSRNCG---IFALDEPT-TNLDI 1272 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~~~~~~~---------------------~~l~~~~~~~a~~~~~~~~---~l~lDEp~-~~lD~ 1272 (1491)
.++|+++++.+++.|+.+++..+ ...++++++||++++.+|+ +|++|||| .+||+
T Consensus 76 ~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~ 155 (418)
T 2qag_C 76 QSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKP 155 (418)
T ss_dssp EEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCH
T ss_pred eEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCH
Confidence 47788888777777776655311 1235677889999999999 89999999 69998
Q ss_pred HhH----HhhcCceEEEEcc
Q psy9513 1273 KNA----SDQKNFQLIVITH 1288 (1491)
Q Consensus 1273 ~~~----~~~~~~~~i~~th 1288 (1491)
... ....+..+|+|.|
T Consensus 156 ~d~~~lk~L~~~v~iIlVin 175 (418)
T 2qag_C 156 LDIEFMKRLHEKVNIIPLIA 175 (418)
T ss_dssp HHHHHHHHHTTTSEEEEEEE
T ss_pred HHHHHHHHHhccCcEEEEEE
Confidence 764 1224677777766
No 319
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.55 E-value=0.79 Score=60.34 Aligned_cols=20 Identities=30% Similarity=0.478 Sum_probs=17.6
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|.|.+|||||.-.+.|.
T Consensus 158 sIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 158 SIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCCccchHHHHH
Confidence 78999999999999887763
No 320
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.55 E-value=0.036 Score=61.86 Aligned_cols=16 Identities=6% Similarity=0.218 Sum_probs=8.3
Q ss_pred hcCceEEEEccCHHHH
Q psy9513 1278 QKNFQLIVITHDEEFI 1293 (1491)
Q Consensus 1278 ~~~~~~i~~thd~~~~ 1293 (1491)
..|.+||++||+....
T Consensus 169 ~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 169 DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHCCEEEEEEEC----
T ss_pred HcCCEEEEEecCCCcc
Confidence 3467777777776544
No 321
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.51 E-value=0.023 Score=62.30 Aligned_cols=19 Identities=42% Similarity=0.559 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.++|
T Consensus 34 ~i~l~G~~GsGKSTla~~L 52 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIK 52 (253)
T ss_dssp EEEEESCGGGTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 322
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.43 E-value=0.022 Score=66.15 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=40.5
Q ss_pred HHHHHHHhhcCCCeeEEcCCCCCCChHhH-----HhhcCceEEEEccCHHHHHHHhccccceEEEE
Q psy9513 1247 HKALAETFSRNCGIFALDEPTTNLDIKNA-----SDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1307 (1491)
Q Consensus 1247 ~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-----~~~~~~~~i~~thd~~~~~~~~~~~~~~~~~l 1307 (1491)
+.+|+.+|..+|+++++|||+ |+... ....|.++|+++|+.+ +..++ ++++.+
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~~~g~~vi~t~H~~~-~~~~~----~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAAETGHLVFGTLHTNT-AIDTI----HRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHHTTTCEEEECCCCCS-HHHHH----HHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHHhcCCEEEEEECcch-HHHHH----HHHHHh
Confidence 359999999999999999999 77665 2244788999999866 55566 665544
No 323
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.42 E-value=0.029 Score=59.93 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+|++||||||+.++|
T Consensus 6 ~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 324
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.41 E-value=0.028 Score=62.70 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.+.|
T Consensus 35 livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp EEEEECCTTSCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 325
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.36 E-value=0.018 Score=61.41 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.5
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||+||||||+++.|.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 58999999999999999994
No 326
>1gxl_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 3.0A {Thermotoga maritima} SCOP: d.215.1.1
Probab=93.30 E-value=0.00025 Score=76.09 Aligned_cols=144 Identities=9% Similarity=0.012 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHhcC---C--CCchhhHHHHHHHHHHHHHHHHHH-----HHHHHHH
Q psy9513 555 TLAEIKSLKNRKE---SKLADINLLKERHDRAFHLLFD---M--IPEENFKNSLDKALSSITFDINRI-----QEDINAK 621 (1491)
Q Consensus 555 ~~~~l~~l~~~~~---~~~~~v~~~~~~~~~~l~~i~g---~--~~~~~~~~aie~~L~~~~~~i~~~-----~~~i~~l 621 (1491)
.+++++.++.... .+..+++.++... ..+.+++| + .+++.|+.+++.+||+..+.+++. ...++++
T Consensus 10 ~~~r~~~L~~~~~~~~~~~~~~~~ll~~~-~~~~g~~g~l~~li~v~~~~e~Ave~aLg~~l~~ivv~~~~~a~~~i~~l 88 (213)
T 1gxl_A 10 IQFEKEMIERDMREYRGFSRAVRAVFEEK-ERFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFL 88 (213)
T ss_dssp HHHHHHHHHHHHHTTTTSCHHHHHHHTTT-TSCTTEEEEGGGTCBCCHHHHHHHHHHHGGGGGCEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHhh-hhhCCCceehhheeeeCHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHH
Confidence 3344455544333 2245666666322 12345555 2 678899999999999998887553 3478888
Q ss_pred HHH-HHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Q psy9513 622 EKH-LYTLEA-NVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEE 699 (1491)
Q Consensus 622 k~~-~~r~~~-~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 699 (1491)
+.. .|+++| |++.+... . ... ..+....|+.++..+++.++..+..+..++++.+.++++++.+......
T Consensus 89 k~~~~gr~~~lpl~~~~~~------~-~~~-~~~~~~~g~~~~~~d~v~~~~~~~~~~~~~lg~~~vv~~l~~A~~~~~~ 160 (213)
T 1gxl_A 89 KQNEAGRVTILPLDLIDGS------F-NRI-SGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKK 160 (213)
T ss_dssp HHHTCEEEEEEETTTSCCC------C-CCC-TTGGGSTTEEEEGGGGCBCCSTTHHHHHHHSSSEEEESSHHHHHHHHHH
T ss_pred HhcCCCceEEEEchhcCCC------C-ccc-hhhhcCCCcHHHHHHHhcCCHHHHHHHHHHhCCEEEECCHHHHHHHHHh
Confidence 877 788998 88765430 0 000 0000112323334466667777888889999999999999999998877
Q ss_pred cCCCCccc
Q psy9513 700 NEPRCPLC 707 (1491)
Q Consensus 700 ~~~~~~~~ 707 (1491)
..+.+++|
T Consensus 161 ~~~~~~~V 168 (213)
T 1gxl_A 161 YRLNTRIA 168 (213)
T ss_dssp TCSSCEEE
T ss_pred cCCCceEE
Confidence 55666666
No 327
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.28 E-value=0.033 Score=61.29 Aligned_cols=28 Identities=32% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEeecc-ceEEEccCCCChhhHHHHHHhh
Q psy9513 23 VRFQRP-LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 23 i~f~~~-~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+.+..+ -++|+||+||||||++++|.-.
T Consensus 40 ~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 40 LGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 333433 6789999999999999999443
No 328
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=93.26 E-value=5.4 Score=37.72 Aligned_cols=53 Identities=13% Similarity=0.168 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q psy9513 343 LENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNL 395 (1491)
Q Consensus 343 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~~~~~~i~~l 395 (1491)
...+......+...+..+...+.........+......++..+.++...+.++
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333443434444444444444444444444444443
No 329
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=93.25 E-value=0.043 Score=69.04 Aligned_cols=22 Identities=36% Similarity=0.661 Sum_probs=19.8
Q ss_pred ceEEEccCCCChhhHHHHHHhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
.++|+|+||||||||+++|.+.
T Consensus 11 ~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 11 TVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHh
Confidence 8999999999999999999443
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.17 E-value=0.034 Score=58.68 Aligned_cols=23 Identities=39% Similarity=0.421 Sum_probs=19.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.=.|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999995444
No 331
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.16 E-value=0.035 Score=57.89 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.-.|
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999995444
No 332
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.15 E-value=0.049 Score=56.70 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=18.3
Q ss_pred ceEEeecc--ceEEEccCCCChhhHHHHH
Q psy9513 21 RVVRFQRP--LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 21 ~~i~f~~~--~~~i~G~NGaGKStl~~~i 47 (1491)
.+++|..+ -++|+|++|+|||||+.++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~vGKSsli~~l 43 (190)
T 1m2o_B 15 ASLGLWNKHGKLLFLGLDNAGKTTLLHML 43 (190)
T ss_dssp ---------CEEEEEESTTSSHHHHHHHH
T ss_pred HHhhccCCccEEEEECCCCCCHHHHHHHH
Confidence 56666654 7899999999999999999
No 333
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.94 E-value=0.037 Score=61.45 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.++|+|++|||||||++++ +|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l----~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNAL----TGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHH----HTTC
T ss_pred EEEEECCCCCCHHHHHHHH----hCCC
Confidence 5799999999999999999 6653
No 334
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.93 E-value=0.039 Score=57.59 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=19.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||+||||||+.+.|.=.|
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999994333
No 335
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.93 E-value=0.039 Score=59.75 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||+||||||+.+.|.-.|
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 89999999999999999994333
No 336
>3l51_A Structural maintenance of chromosomes protein 2; structural maintenance of chromosomes (SMC), hinge domain, C cycle, cell division, cytoplasm; 1.51A {Mus musculus}
Probab=92.91 E-value=0.00023 Score=71.76 Aligned_cols=118 Identities=9% Similarity=-0.064 Sum_probs=81.7
Q ss_pred HHhcC---C--CCc-hhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH-HHHhhHHHH-HHHHHHHHHHHH
Q psy9513 585 HLLFD---M--IPE-ENFKNSLDKALSSITFDINRIQE-----DINAKEKHLYTLEA-NVSNSSKTL-RDQKRTLAELMD 651 (1491)
Q Consensus 585 ~~i~g---~--~~~-~~~~~aie~~L~~~~~~i~~~~~-----~i~~lk~~~~r~~~-~l~~~~~~l-~~~~~~l~~~~~ 651 (1491)
.+++| + .++ +.|+.|++.+||+..++|++.+. +|+++ +..||+|| ||+.++..- .. ...... .
T Consensus 15 ~gv~G~v~dLi~v~d~~y~~Ave~alG~~l~~iVVd~~~~A~~~i~~~-~~~GR~tflpL~~i~~~~~~~--~~~~~~-~ 90 (161)
T 3l51_A 15 NSVKGLVASLINVKDNSTATALEVVAGERLYNVVVDTEVTAKKLLEKG-ELKRRYTIIPLNKISARCIAP--ETLRVA-Q 90 (161)
T ss_dssp GGEEEEGGGSCEESCGGGHHHHHHHHGGGGGCEEESCHHHHHHHHHHS-CCSSCEEEEETTTCCCCCCCH--HHHHHH-H
T ss_pred CccEEEHHHheeeCchhHHHHHHHHhccccceEEECCHHHHHHHHHHH-hhCCcEEEEECccccccCcCH--HHHhhh-h
Confidence 45555 2 453 79999999999999998877544 56664 34799999 998764310 00 000000 0
Q ss_pred HHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc
Q psy9513 652 RMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC 707 (1491)
Q Consensus 652 ~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1491)
.. ..++..+++.++++++++++.+..++++.+.++++++.|...+....+++++|
T Consensus 91 ~~-~~~~~~~~a~dlv~~d~~~~~a~~~llg~tlv~~dl~~A~~~~~~~~~~~r~V 145 (161)
T 3l51_A 91 NL-VGPDNVHVALSLVDYKPELQKGMEFVFGTTFVCNNMDNAKKVAFDKRIMTRTV 145 (161)
T ss_dssp HH-HCTTSEEEGGGGEECCGGGHHHHHHHHTTCEEESSHHHHHHHHHCTTTCCCEE
T ss_pred hc-CCCcchhHHHHHhcCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCCeEE
Confidence 11 11233445667888889999999999999999999999999887665567777
No 337
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.84 E-value=0.042 Score=56.92 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.3
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++++|+||.||||||+..+|.=.|
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999994444
No 338
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.75 E-value=0.044 Score=56.44 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.3
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++++|+||+||||||+.++|.-.|
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 378899999999999999994333
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.64 E-value=0.045 Score=57.69 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.+.|
T Consensus 10 ~I~i~G~~GsGKST~~~~L 28 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALL 28 (203)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 340
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.63 E-value=0.045 Score=57.12 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.=.|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999995444
No 341
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.41 E-value=0.031 Score=65.56 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=30.8
Q ss_pred hhcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 172 LNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 172 ~~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
-.++.|+.-|+...-+ .|-.-..+.+.++|.......++++..
T Consensus 265 g~Pi~fig~Ge~v~dL-~~f~p~~~~~~llg~gd~~~l~e~~~~ 307 (433)
T 3kl4_A 265 GATIKFIGTGEKIDEL-ETFNAKRFVSRILGMGDIESILEKVKG 307 (433)
T ss_dssp TCEEEEEECCSSSSCE-EECCHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCChHhC-ccCCHHHHHHHhcCCchHHHHHHHHHH
Confidence 3467888888877544 344445678889999888777777776
No 342
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.21 E-value=0.056 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred ceEEEccCCCChhhHHHHHHhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+++|.||.||||||+.+.|.=.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999433
No 343
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.03 E-value=0.06 Score=56.93 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|.||+||||||+.++|.
T Consensus 4 ~i~i~G~~GsGKst~~~~la 23 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999993
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.062 Score=55.98 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|+.|||||||+.++
T Consensus 50 ~i~vvG~~g~GKSsll~~l 68 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLL 68 (193)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.97 E-value=0.061 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.=.|
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994333
No 346
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.96 E-value=8.4 Score=36.40 Aligned_cols=37 Identities=19% Similarity=0.078 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q psy9513 350 KSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLND 386 (1491)
Q Consensus 350 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~i~ 386 (1491)
+..+...++........+.....+++.....+...+.
T Consensus 85 l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 85 VKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444333
No 347
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.95 E-value=0.066 Score=55.18 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|++|+|||||+.++
T Consensus 18 ki~ivG~~~vGKSsL~~~l 36 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQL 36 (181)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.92 E-value=0.065 Score=54.71 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.=.|
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999994433
No 349
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.91 E-value=0.048 Score=57.95 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=49.9
Q ss_pred eEEEEccchhhhhhhhh----HHHHhHH----HHhhhHHHHHHHhhcCCCeeEEcCCCCCCChHhH-----HhhcCceEE
Q psy9513 1218 QLIVITHDEEFIENLTA----IDRAYVV----RIVRDHKALAETFSRNCGIFALDEPTTNLDIKNA-----SDQKNFQLI 1284 (1491)
Q Consensus 1218 ~l~~i~~~~~~~~~L~~----~~~~~~~----~l~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~-----~~~~~~~~i 1284 (1491)
+++|+|+++.++..++. .++..++ ...+ .-+..++..++++||| ||+.+. ....+.+|+
T Consensus 63 gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~~---~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~ 134 (219)
T 1s96_A 63 GEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSR---EAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIF 134 (219)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH---HHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEE
T ss_pred CceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCCH---HHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEE
Confidence 58899999999999887 5554221 1122 2234445668999999 999988 222578999
Q ss_pred EEccCHHHHHH
Q psy9513 1285 VITHDEEFIEN 1295 (1491)
Q Consensus 1285 ~~thd~~~~~~ 1295 (1491)
++||+++.+..
T Consensus 135 i~th~~~~l~~ 145 (219)
T 1s96_A 135 ILPPSKIELDR 145 (219)
T ss_dssp EECSSHHHHHH
T ss_pred EECCCHHHHHH
Confidence 99999987754
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.83 E-value=0.066 Score=55.94 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.7
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.-.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999884333
No 351
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.83 E-value=0.072 Score=53.77 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 4 ki~~vG~~~~GKSsli~~l 22 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIF 22 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999
No 352
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=91.76 E-value=0.065 Score=59.14 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
.++|+|++|||||||++++ +|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L----~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLI----TGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHH----HCC
T ss_pred EEEEECCCCCCHHHHHHHH----HCC
Confidence 5799999999999999999 664
No 353
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.71 E-value=0.06 Score=56.63 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=20.4
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
..++|+||+|+|||||+.+|...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999994444
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.65 E-value=0.072 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred ceEEEccCCCChhhHHHHHHhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+++|+|+.||||||+.+.|.-.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999443
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.60 E-value=0.061 Score=55.53 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=14.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+|+.||||||+.+.|.
T Consensus 7 ~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp EEEEECCC----CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999993
No 356
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.59 E-value=0.15 Score=61.09 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=24.5
Q ss_pred ceEEeec---cceEEEccCCCChhhHHHHHHhhh
Q psy9513 21 RVVRFQR---PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 21 ~~i~f~~---~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
..+.|++ +.++|+|++||||||++++|...|
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sL 191 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSM 191 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3455554 399999999999999999986544
No 357
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=91.58 E-value=0.086 Score=60.18 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|||++|+|||||+++|
T Consensus 4 kI~IVG~pnvGKSTL~n~L 22 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNAL 22 (363)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.53 E-value=0.074 Score=56.03 Aligned_cols=20 Identities=35% Similarity=0.333 Sum_probs=18.8
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||.||||||+.+.|.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 78999999999999999993
No 359
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=91.50 E-value=0.082 Score=61.25 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=22.2
Q ss_pred eccceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 26 QRPLTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 26 ~~~~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
....++|+|+||+|||||++++ +|..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L----~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKAL----TTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH----CSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHH----hCCC
Confidence 3448999999999999999999 6654
No 360
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.50 E-value=0.077 Score=61.12 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+|+||||+++++.-.+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999995444
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.47 E-value=0.074 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=19.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.=-|
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994333
No 362
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.45 E-value=0.077 Score=54.80 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.0
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++++|+|+.||||||+.+.|.=.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 378999999999999999984333
No 363
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=91.38 E-value=11 Score=36.49 Aligned_cols=41 Identities=22% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHH
Q psy9513 913 DRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDAL 953 (1491)
Q Consensus 913 ~~i~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 953 (1491)
.+|..+...+.....+....+..+..|+..++.++..+...
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~ 117 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ 117 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444433
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.35 E-value=0.078 Score=55.23 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||.||||||+.+.|.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999984
No 365
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.33 E-value=0.079 Score=56.22 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.=.|
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999994443
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.33 E-value=0.079 Score=55.25 Aligned_cols=21 Identities=33% Similarity=0.341 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHHh
Q psy9513 29 LTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~ 49 (1491)
+++|+|+.||||||+.+.|.=
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999943
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.32 E-value=0.078 Score=56.74 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.-.|
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999995444
No 368
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.29 E-value=0.072 Score=54.88 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|++|+|||||+..+
T Consensus 20 ~i~v~G~~~~GKssli~~l 38 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRL 38 (183)
T ss_dssp EEEEEEETTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999998
No 369
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.28 E-value=0.091 Score=53.08 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 7 ~i~v~G~~~~GKssl~~~l 25 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRY 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4689999999999999999
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.22 E-value=0.084 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.=.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999994444
No 371
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.17 E-value=0.083 Score=58.36 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=19.4
Q ss_pred cceEEEccCCCChhhHHHHHHh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~ 49 (1491)
++++|+||+|||||||...|.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 4789999999999999999933
No 372
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.12 E-value=0.1 Score=53.48 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 11 ~i~v~G~~~~GKssl~~~l 29 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRF 29 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 373
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.10 E-value=0.091 Score=53.21 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 4 ki~ivG~~~~GKSsli~~l 22 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTF 22 (169)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999
No 374
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.09 E-value=0.086 Score=56.12 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
.++|+||.||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999999993
No 375
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.06 E-value=0.088 Score=55.40 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||.||||||+.+.|.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999984
No 376
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.05 E-value=0.086 Score=55.90 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.=.|
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999999995433
No 377
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.04 E-value=0.092 Score=53.50 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 6 ki~i~G~~~vGKSsl~~~l 24 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLF 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHH
Confidence 5789999999999999999
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.04 E-value=0.086 Score=57.94 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|++||||||+.+.|.-.|
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999995443
No 379
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.03 E-value=0.098 Score=52.91 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRF 23 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 380
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.01 E-value=0.069 Score=59.58 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=17.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|.||+||||||+.+.|.-.|
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999996555
No 381
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.01 E-value=0.098 Score=52.58 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|||||||+.++
T Consensus 5 ~i~v~G~~~~GKssl~~~l 23 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQL 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 382
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.97 E-value=0.088 Score=56.56 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=19.1
Q ss_pred ceEEEccCCCChhhHHHHHHh
Q psy9513 29 LTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~ 49 (1491)
+++|+||.||||||+.+.|.-
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999943
No 383
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.96 E-value=0.1 Score=52.87 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 8 ~i~v~G~~~~GKSsli~~l 26 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRF 26 (170)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.94 E-value=0.11 Score=52.57 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRF 23 (172)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 385
>1gxj_A SMC, chromosome segregation SMC protein; SMC dimerisation domain, anti parallel coiled coil, SMC proteins; 2.0A {Thermotoga maritima} SCOP: d.215.1.1 PDB: 1gxk_A
Probab=90.92 E-value=0.00037 Score=72.75 Aligned_cols=129 Identities=9% Similarity=0.031 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhHHHHHhcC---C--CCchhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHH-HHHhhHH
Q psy9513 570 LADINLLKERHDRAFHLLFD---M--IPEENFKNSLDKALSSITFDINR-----IQEDINAKEKH-LYTLEA-NVSNSSK 637 (1491)
Q Consensus 570 ~~~v~~~~~~~~~~l~~i~g---~--~~~~~~~~aie~~L~~~~~~i~~-----~~~~i~~lk~~-~~r~~~-~l~~~~~ 637 (1491)
..+++.++.... .+.+++| + .+++.|+.|++.+||+..+.+++ ....++++++. .|+++| |++.+..
T Consensus 16 ~~~~~~~l~~~~-~~~g~~g~l~~li~v~~~~e~Ave~aLG~~l~~ivv~~~~~a~~~i~~lk~~~~gr~tflpl~~~~~ 94 (186)
T 1gxj_A 16 SRAVRAVFEEKE-RFPGLVDVVSNLIEVDEKYSLAVSVLLGGTAQNIVVRNVDTAKAIVEFLKQNEAGRVTILPLDLIDG 94 (186)
T ss_dssp CHHHHHHHHTGG-GCTTEEEEHHHHCBCCGGGHHHHHHHHGGGGGCEEESSHHHHHHHHHHHHHHTCCCEEEEETTTCCC
T ss_pred hHHHHHHHHhhh-hhCCcceehhheeccCHHHHHHHHHHHHHhhhEEEECCHHHHHHHHHHHHhcCCCceEEEEccccCC
Confidence 356666664321 2345555 2 67899999999999999888754 33488899887 899999 8887543
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc
Q psy9513 638 TLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC 707 (1491)
Q Consensus 638 ~l~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1491)
. . ... ..+....|+.+++.+++.++..+..+..++++.+.++++++.|........+.+++|
T Consensus 95 ~------~-~~~-~~~~~~~g~~~~~~dlv~~~~~~~~~~~~~lg~~~v~~~l~~A~~l~~~~~~~~~~V 156 (186)
T 1gxj_A 95 S------F-NRI-SGLENERGFVGYAVDLVKFPSDLEVLGGFLFGNSVVVETLDDAIRMKKKYRLNTRIA 156 (186)
T ss_dssp C------C-CCC-TTGGGSTTEEEEHHHHCBCCGGGHHHHHHHHTTCEEESCHHHHHHHHHHHTCCSCEE
T ss_pred C------c-ccc-hhcccCCCchHHHHHHccCCHHHHHHHHHHcCCEEEECCHHHHHHHHHhcCCCceEE
Confidence 1 0 000 001111344445678888888899999999999999999999999988766777777
No 386
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.91 E-value=0.091 Score=52.65 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRL 21 (161)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 387
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.87 E-value=0.11 Score=53.78 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=17.6
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 3 ki~v~G~~~~GKSsli~~l 21 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRL 21 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999
No 388
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=90.84 E-value=0.089 Score=59.09 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred eeccceEEEccCCCChhhHHHHH
Q psy9513 25 FQRPLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 25 f~~~~~~i~G~NGaGKStl~~~i 47 (1491)
|..++++|+|++|+|||||++++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l 27 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNL 27 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHH
Confidence 34458999999999999999999
No 389
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.81 E-value=0.094 Score=56.11 Aligned_cols=23 Identities=39% Similarity=0.388 Sum_probs=19.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.-.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999995444
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.79 E-value=0.094 Score=59.06 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||+|||||||...|.-.|
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 78999999999999999994444
No 391
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.78 E-value=0.11 Score=52.40 Aligned_cols=19 Identities=21% Similarity=0.513 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 5 ~i~v~G~~~~GKSsli~~l 23 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 392
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.75 E-value=0.11 Score=52.45 Aligned_cols=19 Identities=21% Similarity=0.490 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 5 ki~v~G~~~~GKssli~~l 23 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQF 23 (167)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4689999999999999999
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.71 E-value=0.098 Score=55.66 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=17.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||.||||||+.+.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999999999
No 394
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.70 E-value=0.12 Score=52.80 Aligned_cols=19 Identities=37% Similarity=0.655 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|+.|||||||+.++
T Consensus 10 ~i~v~G~~~~GKssl~~~l 28 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAI 28 (178)
T ss_dssp EEEEESCTTTTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 395
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.67 E-value=0.098 Score=55.59 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+|+.||||||+.+.|.=.|
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999995443
No 396
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.66 E-value=0.096 Score=59.03 Aligned_cols=20 Identities=40% Similarity=0.685 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
.++|+||+||||||+.++|.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHH
Confidence 78999999999999999993
No 397
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.64 E-value=0.11 Score=53.27 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|||||||+..+
T Consensus 10 ~i~v~G~~~~GKSsli~~l 28 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRY 28 (182)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 398
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.61 E-value=0.025 Score=63.61 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=31.6
Q ss_pred hhhHHHHHHHhhcCCCeeEEcCCCCC-CChHhH-----Hhh-cCceEEEEccCHH
Q psy9513 1244 VRDHKALAETFSRNCGIFALDEPTTN-LDIKNA-----SDQ-KNFQLIVITHDEE 1291 (1491)
Q Consensus 1244 ~~~~~~~a~~~~~~~~~l~lDEp~~~-lD~~~~-----~~~-~~~~~i~~thd~~ 1291 (1491)
+||++++|++++ +|++||||++ ||+... ... .+.++|+++||+.
T Consensus 118 ~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 118 NRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 466666666653 8999999985 999765 222 3677888899863
No 399
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.60 E-value=0.099 Score=54.47 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=18.7
Q ss_pred cceEEEccCCCChhhHHHHH
Q psy9513 28 PLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i 47 (1491)
..++|+|+.|+|||||++++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l 43 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSL 43 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 400
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.56 E-value=0.11 Score=53.03 Aligned_cols=19 Identities=21% Similarity=0.662 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|||||||++++
T Consensus 9 ~i~v~G~~~~GKSsli~~l 27 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRY 27 (177)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 401
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.56 E-value=0.0071 Score=64.68 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=46.2
Q ss_pred HHhhhHHHH-----HHHhhcCCCeeEEcCCCCCCChHhH------H----hh------cCceEEEEccCHHHHHHHh
Q psy9513 1242 RIVRDHKAL-----AETFSRNCGIFALDEPTTNLDIKNA------S----DQ------KNFQLIVITHDEEFIENLT 1297 (1491)
Q Consensus 1242 ~l~~~~~~~-----a~~~~~~~~~l~lDEp~~~lD~~~~------~----~~------~~~~~i~~thd~~~~~~~~ 1297 (1491)
..++||++| |++|+.+|++++|||||+++|..+. . .. .++..|+++||.+.+...+
T Consensus 125 ggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 125 GVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp HHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 347899999 8899999999999999999997654 1 11 5688999999999888877
No 402
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.54 E-value=0.11 Score=52.53 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRY 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 403
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.51 E-value=0.12 Score=52.16 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 6 ~i~v~G~~~~GKssl~~~l 24 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQF 24 (168)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 404
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.50 E-value=0.11 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.-.|
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999994444
No 405
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=90.41 E-value=0.074 Score=60.43 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+|+||||+.++|.-.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 68999999999999999994444
No 406
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.41 E-value=0.071 Score=63.07 Aligned_cols=79 Identities=10% Similarity=0.040 Sum_probs=53.5
Q ss_pred ceEEEEcc-chhhhhhhhhHHHHhH-HHH--------------------hhhHHHHHHHhhcCCCeeEEcCCCCCCChHh
Q psy9513 1217 FQLIVITH-DEEFIENLTAIDRAYV-VRI--------------------VRDHKALAETFSRNCGIFALDEPTTNLDIKN 1274 (1491)
Q Consensus 1217 ~~l~~i~~-~~~~~~~L~~~~~~~~-~~l--------------------~~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~ 1274 (1491)
..++|++| +..+++.+++.++..+ ... -.||++|| +.+|++ |+|||+.+
T Consensus 213 r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslA---l~~p~~------t~glD~~~ 283 (438)
T 2dpy_A 213 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALA---IGEPPA------TKGYPPSV 283 (438)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHH---TTCCCC------SSSCCTTH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHH---hCCCcc------cccCCHHH
Confidence 46899998 4677888887776421 110 12788888 677877 99999998
Q ss_pred H---------Hhh----cCc-----eEEEEccCHHHHHHHhccccceEEEEecC
Q psy9513 1275 A---------SDQ----KNF-----QLIVITHDEEFIENLTAIDRAYVVRIVRD 1310 (1491)
Q Consensus 1275 ~---------~~~----~~~-----~~i~~thd~~~~~~~~~~~~~~~~~l~~~ 1310 (1491)
. ... .|. ||+++|||++ ..+| |+++.+.+|
T Consensus 284 ~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~ia----d~v~~l~dG 331 (438)
T 2dpy_A 284 FAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIA----DSARAILDG 331 (438)
T ss_dssp HHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHH----HHHHHHSSE
T ss_pred HHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhh----ceEEEEeCc
Confidence 7 112 253 8999999997 4566 555554443
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.39 E-value=0.11 Score=52.56 Aligned_cols=19 Identities=26% Similarity=0.655 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 5 ~i~v~G~~~~GKssli~~l 23 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRF 23 (170)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 4689999999999999999
No 408
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.38 E-value=0.1 Score=57.93 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=19.1
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+|+.||||||+.+.|.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 89999999999999999995
No 409
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.36 E-value=0.11 Score=58.74 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=19.1
Q ss_pred cceEEEccCCCChhhHHHHH
Q psy9513 28 PLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i 47 (1491)
++++|+|+.|||||||+++|
T Consensus 11 g~v~ivG~~nvGKSTLin~l 30 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNL 30 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 39999999999999999999
No 410
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.36 E-value=0.11 Score=54.14 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|||||||++++
T Consensus 25 ~i~v~G~~~~GKSsli~~l 43 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNAL 43 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 411
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.35 E-value=0.13 Score=52.51 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=18.3
Q ss_pred cceEEEccCCCChhhHHHHH
Q psy9513 28 PLTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i 47 (1491)
..++|+||+||||||+.-.|
T Consensus 35 ~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 38999999999999998887
No 412
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.30 E-value=0.12 Score=58.19 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.0
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+||||||+.++|.-.|
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58899999999999999985554
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.29 E-value=0.12 Score=56.33 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=34.8
Q ss_pred hhHHHHHHHhhcCCCeeEEcCCCCCCChHhHHhhcCceEEEEccC-HHHHHHHh
Q psy9513 1245 RDHKALAETFSRNCGIFALDEPTTNLDIKNASDQKNFQLIVITHD-EEFIENLT 1297 (1491)
Q Consensus 1245 ~~~~~~a~~~~~~~~~l~lDEp~~~lD~~~~~~~~~~~~i~~thd-~~~~~~~~ 1297 (1491)
++|+++ ++++.+|++++||+|+..++..-. ...+.+|+++||+ ......++
T Consensus 122 ~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~-~~~~~~i~v~th~~~~~~r~~~ 173 (245)
T 2jeo_A 122 HSRLPE-TTVVYPADVVLFEGILVFYSQEIR-DMFHLRLFVDTDSDVRLSRRVL 173 (245)
T ss_dssp TEECSS-CEEECCCSEEEEECTTTTTSHHHH-TTCSEEEEEECCHHHHHHHHHH
T ss_pred cCccCc-eEEecCCCEEEEeCccccccHHHH-HhcCeEEEEECCHHHHHHHHHH
Confidence 344544 356678999999999988886532 2247899999997 44434444
No 414
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=90.25 E-value=0.087 Score=60.40 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=18.8
Q ss_pred ceEEEccCCCChhhHHHHHHhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+++|+||||||||||+..+...
T Consensus 63 iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999998777433
No 415
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.23 E-value=0.13 Score=55.99 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.++|+|++|+|||||+++| .|..
T Consensus 23 ~I~lvG~~g~GKSSlin~l----~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSI----LGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHH----HTSC
T ss_pred EEEEECCCCCcHHHHHHHH----hCCC
Confidence 6899999999999999999 6654
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.20 E-value=0.11 Score=58.01 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.0
Q ss_pred ceEEEccCCCChhhHHHHHHh
Q psy9513 29 LTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~ 49 (1491)
+++|+||+|||||||..+|.-
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999933
No 417
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.18 E-value=0.11 Score=54.28 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.1
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
-++|+|+.|+|||||++.+ .|..+
T Consensus 16 ki~vvG~~~~GKssL~~~l----~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWI----YSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHH----HHTSC
T ss_pred EEEEECCCCCCHHHHHHHH----Hhhcc
Confidence 5689999999999999887 56544
No 418
>2wd5_A Structural maintenance of chromosomes protein 1A; DNA damage, cell cycle, cell division; 2.70A {Mus musculus}
Probab=90.17 E-value=0.00075 Score=72.98 Aligned_cols=115 Identities=9% Similarity=-0.008 Sum_probs=77.7
Q ss_pred HHHH-hcC---C--CC-chhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH-HHHHHH-HHHhhHHHHHHHHHHHHH
Q psy9513 583 AFHL-LFD---M--IP-EENFKNSLDKALSSITFDINR-----IQEDINAKEKH-LYTLEA-NVSNSSKTLRDQKRTLAE 648 (1491)
Q Consensus 583 ~l~~-i~g---~--~~-~~~~~~aie~~L~~~~~~i~~-----~~~~i~~lk~~-~~r~~~-~l~~~~~~l~~~~~~l~~ 648 (1491)
.+.| ++| + .+ ++.|..||+.+||+..+.|++ ...++.+++.. .|+++| |++.+.+ .....
T Consensus 50 ~~~g~v~G~l~dli~v~~~~ye~Ave~aLG~~l~~iVV~~~~~a~~~i~~Lk~~~~Gr~tflpl~~i~~------~~~~~ 123 (233)
T 2wd5_A 50 LYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGEPETFLPLDYLEV------KPTDE 123 (233)
T ss_dssp HSGGGEEEEHHHHEEESSGGGHHHHHHHHGGGGSCEEESCHHHHHHHHHHHHHTTCCCEEEEETTTCCC------CCCCG
T ss_pred hCCCCeeeeHHHhceeCcHHHHHHHHHHHHHhhcEEEECCHHHHHHHHHHHHhcCCCCeEEEECccccc------CCcch
Confidence 3566 666 2 44 689999999999998888654 33488888876 889999 8877532 00000
Q ss_pred HHHHHHhhhCCCChHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCccc
Q psy9513 649 LMDRMELVLGSKPFEDELDRV-TLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLC 707 (1491)
Q Consensus 649 ~~~~l~~~~~~~~~~~~l~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1491)
.+....++ ....+++.+ ++.+..+..++++.+.++++++.|...+....+.+++|
T Consensus 124 ---~~~~~~g~-~~l~dlV~~~~~~~~~~~~~~Lg~~~vv~dl~~A~~l~~~~~~~~r~V 179 (233)
T 2wd5_A 124 ---KLRELKGA-KLVIDVIRYEPPHIKKALQYACGNALVCDNVEDARRIAFGGHQRHKTV 179 (233)
T ss_dssp ---GGGGCSSC-EESGGGEEESSGGGHHHHHHHTTTCEEESSHHHHHHHHHSSSSCCCEE
T ss_pred ---hccCCCCc-hHHHHhhhCCcHHHHHHHHHHhCCEEEECCHHHHHHHHHhcCCCceEE
Confidence 00111221 123355666 47788888999999999999999999886653456666
No 419
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.14 E-value=0.092 Score=59.41 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.8
Q ss_pred eEEeecc---ceEEEccCCCChhhHHHHH
Q psy9513 22 VVRFQRP---LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 22 ~i~f~~~---~~~i~G~NGaGKStl~~~i 47 (1491)
++.|.++ .++|+||+|||||||+..|
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~I 194 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNI 194 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHH
Confidence 4555554 9999999999999999987
No 420
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.13 E-value=0.12 Score=52.34 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.5
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.+++|+|+.||||||+.+.|.=-|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 488999999999999999994444
No 421
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.08 E-value=0.12 Score=56.64 Aligned_cols=23 Identities=39% Similarity=0.816 Sum_probs=20.4
Q ss_pred cceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
+.++|+|+.|||||||++++ +|.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L----~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNAL----TNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHH----HTT
T ss_pred CEEEEECCCCCCHHHHHHHH----HCC
Confidence 35799999999999999999 665
No 422
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=90.06 E-value=0.13 Score=57.13 Aligned_cols=19 Identities=42% Similarity=0.830 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+++|
T Consensus 10 ~I~vvG~~g~GKSTLin~L 28 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSL 28 (274)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999998
No 423
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.05 E-value=0.14 Score=53.01 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 6 ki~v~G~~~~GKSsli~~l 24 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQL 24 (189)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 424
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.04 E-value=0.12 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|.||.||||||+.+.|.-.|
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999995555
No 425
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.02 E-value=0.18 Score=51.09 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 9 ~i~v~G~~~~GKssl~~~l 27 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRL 27 (171)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 426
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.99 E-value=0.09 Score=67.76 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.++|+||||||||||+++| .|..+
T Consensus 240 ~vLL~Gp~GtGKTtLaral----a~~l~ 263 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAV----ANETG 263 (806)
T ss_dssp EEEECSCTTSSHHHHHHHH----HHTTT
T ss_pred eEEEECcCCCCHHHHHHHH----HHHcC
Confidence 7899999999999999999 77653
No 427
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.95 E-value=0.13 Score=60.65 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.3
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYPQ 57 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~~ 57 (1491)
.++|+||+|+||||+++++ .+..++
T Consensus 46 ~~li~G~~G~GKTtl~~~l----~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKL----WELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHH----HHHHTT
T ss_pred eEEEECCCCCCHHHHHHHH----HHHHhh
Confidence 7999999999999999999 555444
No 428
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.95 E-value=0.12 Score=53.91 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 25 ki~vvG~~~vGKSsLi~~l 43 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTF 43 (195)
T ss_dssp EEEEECSTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999998
No 429
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=89.94 E-value=0.12 Score=55.91 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+|+||||++.++...+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999995554
No 430
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.90 E-value=0.13 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=19.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+++|+||.||||||+.+.|.-.|
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 78999999999999999994444
No 431
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.85 E-value=0.14 Score=52.36 Aligned_cols=19 Identities=32% Similarity=0.559 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 16 ~i~v~G~~~~GKssli~~l 34 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRF 34 (179)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 432
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.82 E-value=0.13 Score=56.77 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.3
Q ss_pred ceEEEccCCCChhhHHHHHHhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFA 50 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~ 50 (1491)
+++|+||+|||||||...|.-.
T Consensus 12 ~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 7899999999999999999433
No 433
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.77 E-value=0.2 Score=50.25 Aligned_cols=19 Identities=47% Similarity=0.674 Sum_probs=17.6
Q ss_pred eEEEccCCCChhhHHHHHH
Q psy9513 30 TLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 30 ~~i~G~NGaGKStl~~~i~ 48 (1491)
++|+|+.|+|||||+..+.
T Consensus 3 i~~~G~~~~GKssl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLK 21 (164)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999999993
No 434
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.76 E-value=0.13 Score=52.61 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 11 ~i~v~G~~~~GKssli~~l 29 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQF 29 (181)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 435
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.75 E-value=0.11 Score=59.74 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|||++|+|||||+++|
T Consensus 3 ~v~IVG~pnvGKSTL~n~L 21 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNAL 21 (368)
T ss_dssp SEEEECCSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999999999
No 436
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.74 E-value=0.13 Score=53.37 Aligned_cols=19 Identities=32% Similarity=0.714 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRF 45 (193)
T ss_dssp EEEEESSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999998
No 437
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.67 E-value=0.14 Score=51.74 Aligned_cols=19 Identities=21% Similarity=0.515 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 8 ~i~v~G~~~~GKssli~~l 26 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRF 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 438
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.62 E-value=0.18 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.634 Sum_probs=21.6
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
.++|+||.|+||||++.++...+..
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999666643
No 439
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=89.61 E-value=0.19 Score=49.48 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-+.|+||.|+|||++.++|
T Consensus 26 ~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CEEEESSTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 440
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.59 E-value=0.13 Score=57.86 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.2
Q ss_pred ceEEEccCCCChhhHHHHHHh
Q psy9513 29 LTLIVGENGCGKTTIIECIKF 49 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~ 49 (1491)
.++|+||+|+||||+.++|.-
T Consensus 56 ~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 789999999999999999943
No 441
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.55 E-value=0.15 Score=52.50 Aligned_cols=19 Identities=26% Similarity=0.608 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 12 ki~v~G~~~~GKSsli~~l 30 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQF 30 (186)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 442
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.49 E-value=0.14 Score=54.42 Aligned_cols=19 Identities=26% Similarity=0.564 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||.|+|||||+.++
T Consensus 14 ~i~~~G~~g~GKTsl~~~l 32 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLL 32 (218)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7889999999999999999
No 443
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=89.47 E-value=0.14 Score=58.30 Aligned_cols=28 Identities=25% Similarity=0.525 Sum_probs=24.0
Q ss_pred EeeccceEEEccCCCChhhHHHHHHhhhcCCC
Q psy9513 24 RFQRPLTLIVGENGCGKTTIIECIKFALTNEY 55 (1491)
Q Consensus 24 ~f~~~~~~i~G~NGaGKStl~~~i~~~l~g~~ 55 (1491)
.+..+.++|+|+.|||||||+++| .|..
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l----~g~~ 48 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENI----VGRD 48 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHH----HTSC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHH----HCCC
Confidence 355679999999999999999999 6753
No 444
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.47 E-value=0.14 Score=52.71 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.6
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~ 40 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRY 40 (184)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999877
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.47 E-value=0.23 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.635 Sum_probs=21.5
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTN 53 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g 53 (1491)
.++|+||.|+||||++.++...+..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999666644
No 446
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.45 E-value=0.14 Score=52.30 Aligned_cols=19 Identities=26% Similarity=0.749 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 8 ki~v~G~~~~GKssl~~~l 26 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCF 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 447
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.44 E-value=0.14 Score=54.29 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=18.8
Q ss_pred eEEEccCCCChhhHHHHHHhhh
Q psy9513 30 TLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 30 ~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++|+||.||||||+.+.|.=.+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999994433
No 448
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.42 E-value=0.14 Score=55.20 Aligned_cols=19 Identities=42% Similarity=0.805 Sum_probs=17.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+||+||||||++.++
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 8999999999999988766
No 449
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.42 E-value=0.15 Score=52.43 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=17.7
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 9 ki~v~G~~~vGKSsli~~l 27 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVF 27 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5689999999999999998
No 450
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.37 E-value=0.15 Score=53.16 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
-++|+|+.|+|||||++.+ +|...
T Consensus 22 ki~~vG~~~vGKTsLi~~l----~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVV----FHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHH----HSCCC
T ss_pred EEEEECCCCCCHHHHHHHH----HhcCC
Confidence 7889999999999999877 66443
No 451
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.28 E-value=0.15 Score=55.91 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|+.|||||||++++
T Consensus 7 kI~lvG~~nvGKTsL~n~l 25 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNAL 25 (258)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999999999
No 452
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.24 E-value=0.16 Score=52.34 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 20 ~i~v~G~~~~GKssl~~~l 38 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKF 38 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 453
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.24 E-value=0.14 Score=53.89 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=20.8
Q ss_pred ccCCCCcceEEeecc---ceEEEccCCCChhhHHHHH
Q psy9513 14 NFPADKNRVVRFQRP---LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 14 ~~~~~~~~~i~f~~~---~~~i~G~NGaGKStl~~~i 47 (1491)
+|.+....++.|... -++|+|+.|+|||||+.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l 45 (207)
T 2fv8_A 9 SGVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVF 45 (207)
T ss_dssp ----------CGGGSEEEEEEEEECTTSSHHHHHHHH
T ss_pred ccccccccccccccccCcEEEEECcCCCCHHHHHHHH
Confidence 444322255655544 7899999999999999999
No 454
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.22 E-value=0.15 Score=52.82 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 13 ki~v~G~~~~GKSsli~~l 31 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQY 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 455
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.18 E-value=0.15 Score=55.24 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred ceEEEccCCCChhhHHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~ 48 (1491)
+++|+||.||||||+.+.|.
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999994
No 456
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.10 E-value=0.17 Score=51.91 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 20 ki~v~G~~~~GKSsl~~~l 38 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQF 38 (183)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 457
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.10 E-value=0.17 Score=50.22 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=17.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|.||+|+||||+.-++
T Consensus 18 gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLAL 36 (181)
T ss_dssp EEEEEESSSSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 7889999999999998776
No 458
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.09 E-value=0.16 Score=52.59 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 23 ki~vvG~~~~GKSsli~~l 41 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQL 41 (190)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6889999999999999999
No 459
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.08 E-value=0.15 Score=57.46 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=11.5
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||+||||||+.+.|
T Consensus 4 ~I~l~G~~GsGKST~a~~L 22 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREF 22 (301)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4556666666666666555
No 460
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.01 E-value=0.17 Score=52.53 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 28 ki~vvG~~~~GKSsLi~~l 46 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERF 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 461
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.00 E-value=0.18 Score=51.53 Aligned_cols=19 Identities=26% Similarity=0.615 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 17 ~i~v~G~~~~GKSsli~~l 35 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQF 35 (179)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=88.97 E-value=0.17 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCCCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNEYP 56 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~~~ 56 (1491)
.++|+|++|+|||||+++| .|...
T Consensus 101 ~v~~vG~~~vGKSslin~l----~~~~~ 124 (262)
T 3cnl_A 101 RVLIVGVPNTGKSTIINKL----KGKRA 124 (262)
T ss_dssp EEEEEESTTSSHHHHHHHH----HTTCC
T ss_pred heEEeCCCCCCHHHHHHHH----hcccc
Confidence 5789999999999999999 66543
No 463
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.91 E-value=0.17 Score=51.77 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 12 ~i~v~G~~~~GKssli~~l 30 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRF 30 (180)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999998
No 464
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.90 E-value=0.17 Score=53.12 Aligned_cols=19 Identities=32% Similarity=0.632 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 9 ki~v~G~~~~GKSsli~~l 27 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRL 27 (208)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 465
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.89 E-value=7.5 Score=44.54 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred cCCCeeEEcCCCCCCChHhH
Q psy9513 1256 RNCGIFALDEPTTNLDIKNA 1275 (1491)
Q Consensus 1256 ~~~~~l~lDEp~~~lD~~~~ 1275 (1491)
.||+.=-+-|++.++-+.+.
T Consensus 387 ~npdwg~f~e~~gs~sp~t~ 406 (562)
T 3ghg_A 387 NNPDWGTFEEVSGNVSPGTR 406 (562)
T ss_dssp --------------------
T ss_pred CCCCCcceecccCCcCCCcc
Confidence 34555555666666665554
No 466
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=88.87 E-value=0.18 Score=52.39 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 25 ki~vvG~~~~GKSsli~~l 43 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRF 43 (192)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999999
No 467
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.85 E-value=0.16 Score=57.98 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.8
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+|+||||++.+|.-.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 78899999999999999994333
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.85 E-value=0.18 Score=52.81 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l 46 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRF 46 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999998
No 469
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=88.84 E-value=0.16 Score=56.22 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.9
Q ss_pred ceEEEccCCCChhhHHHHHHhhhcCC
Q psy9513 29 LTLIVGENGCGKTTIIECIKFALTNE 54 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l~g~ 54 (1491)
.++|+|+.|||||||++++ +|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l----~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQL----TGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHH----HTT
T ss_pred EEEEECCCCCCHHHHHHHH----hCC
Confidence 5789999999999999999 664
No 470
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.81 E-value=0.17 Score=52.04 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 20 ki~v~G~~~~GKSsli~~l 38 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQF 38 (187)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 471
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.81 E-value=0.17 Score=51.78 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 14 ki~v~G~~~~GKSsli~~l 32 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRF 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 472
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.77 E-value=0.16 Score=55.80 Aligned_cols=19 Identities=32% Similarity=0.566 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|+.|||||||++.|
T Consensus 24 ~I~lvG~~g~GKStl~n~l 42 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSI 42 (260)
T ss_dssp EEEEEECTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 473
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.76 E-value=0.17 Score=53.11 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 16 ki~v~G~~~~GKSsli~~l 34 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQF 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999998
No 474
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.75 E-value=0.19 Score=52.32 Aligned_cols=19 Identities=26% Similarity=0.627 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 18 ki~v~G~~~~GKSsli~~l 36 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRF 36 (196)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 475
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.71 E-value=0.23 Score=50.71 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 9 ki~~vG~~~vGKTsli~~l 27 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRF 27 (178)
T ss_dssp EEEEECCGGGCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 476
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.70 E-value=0.18 Score=51.76 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 8 ki~~~G~~~~GKSsli~~l 26 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQF 26 (181)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999999
No 477
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.67 E-value=0.17 Score=52.48 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 23 ki~v~G~~~~GKSsli~~l 41 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKL 41 (190)
T ss_dssp EEEEEECTTSSHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 478
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.65 E-value=0.39 Score=49.18 Aligned_cols=36 Identities=17% Similarity=0.096 Sum_probs=28.7
Q ss_pred hcCCCeeEEcCCCC-CCChHhH---------HhhcCceEEEEccCH
Q psy9513 1255 SRNCGIFALDEPTT-NLDIKNA---------SDQKNFQLIVITHDE 1290 (1491)
Q Consensus 1255 ~~~~~~l~lDEp~~-~lD~~~~---------~~~~~~~~i~~thd~ 1290 (1491)
..+|++|+||||++ ++|+... ....|.++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45899999999995 8998775 234688999999954
No 479
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.63 E-value=0.15 Score=60.85 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.4
Q ss_pred Eeecc-ceEEEccCCCChhhHHHHHH
Q psy9513 24 RFQRP-LTLIVGENGCGKTTIIECIK 48 (1491)
Q Consensus 24 ~f~~~-~~~i~G~NGaGKStl~~~i~ 48 (1491)
.+.+| -++|+||+|+|||||+++|.
T Consensus 45 g~~~p~gvLL~GppGtGKT~Laraia 70 (476)
T 2ce7_A 45 GARMPKGILLVGPPGTGKTLLARAVA 70 (476)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 34444 57899999999999999993
No 480
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.62 E-value=0.19 Score=52.87 Aligned_cols=19 Identities=32% Similarity=0.705 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQY 28 (207)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999999999
No 481
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.58 E-value=0.18 Score=52.86 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l 45 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQF 45 (200)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 6789999999999999999
No 482
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.57 E-value=0.18 Score=52.12 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 24 ki~vvG~~~~GKSsli~~l 42 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRY 42 (189)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999998
No 483
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.53 E-value=0.17 Score=60.27 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.2
Q ss_pred ceEEEccCCCChhhHHHHHHhhh
Q psy9513 29 LTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
.++|+||+|+|||||+.+|.-.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999995444
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.52 E-value=0.17 Score=58.00 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=20.5
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
++++|+||+|||||||...|.-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 378999999999999999995444
No 485
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.49 E-value=0.19 Score=51.75 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 7 ~i~~~G~~~~GKssl~~~l 25 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISY 25 (186)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 486
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.48 E-value=0.2 Score=52.29 Aligned_cols=19 Identities=21% Similarity=0.546 Sum_probs=18.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 10 ki~vvG~~~~GKSsli~~l 28 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRF 28 (199)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 5789999999999999999
No 487
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=88.40 E-value=0.19 Score=53.85 Aligned_cols=19 Identities=16% Similarity=0.492 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
.++|+|+.|+|||||+.++
T Consensus 31 kI~vvG~~~vGKSsLin~l 49 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIV 49 (228)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 488
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=88.38 E-value=0.2 Score=52.43 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++++
T Consensus 26 ki~vvG~~~~GKSsli~~l 44 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQF 44 (201)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 6899999999999999999
No 489
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.36 E-value=0.2 Score=58.61 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=31.8
Q ss_pred hcceeeccCCCCCCCCcchhhHHHHHHhhhhhhHHHHHHHHHH
Q psy9513 173 NNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKI 215 (1491)
Q Consensus 173 ~~~~f~~q~e~~~~l~~~~~~k~~~~~i~g~~~~~~~~~~lk~ 215 (1491)
-++.|+.-|+....| .|-....+.+.++|.....-.++++..
T Consensus 267 ~PI~fig~Ge~vddL-~~f~~~~~~~~llg~gd~~~l~e~~~~ 308 (443)
T 3dm5_A 267 APIKFIGTGEKIDDI-EPFDPPRFVSRLLGLGDIQGLLEKFKE 308 (443)
T ss_dssp CCEEEEECSSSTTCE-EECCHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CCEEEEEcCCChHHh-hhCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence 367888888877655 455556788999999888777777776
No 490
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=88.34 E-value=0.19 Score=53.67 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.9
Q ss_pred cceEEEccCCCChhhHHHHHHhhh
Q psy9513 28 PLTLIVGENGCGKTTIIECIKFAL 51 (1491)
Q Consensus 28 ~~~~i~G~NGaGKStl~~~i~~~l 51 (1491)
+.++|+|+.|||||||+..+...+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 389999999999999999995544
No 491
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.28 E-value=0.2 Score=52.11 Aligned_cols=19 Identities=32% Similarity=0.695 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|++|+|||||+..+
T Consensus 8 kv~lvG~~~vGKSsL~~~~ 26 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIF 26 (192)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999988
No 492
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.24 E-value=0.21 Score=55.97 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=18.4
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|+||.|||||||...|
T Consensus 42 lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 8999999999999999999
No 493
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=88.20 E-value=0.24 Score=51.87 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=17.8
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRY 28 (203)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999998
No 494
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.19 E-value=0.21 Score=52.53 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=17.9
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 10 ki~v~G~~~~GKSsli~~l 28 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRF 28 (206)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999999999
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.11 E-value=0.19 Score=51.64 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=18.3
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||++.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l 41 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQF 41 (181)
T ss_dssp EEEEEEETTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 496
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.09 E-value=0.21 Score=51.82 Aligned_cols=19 Identities=42% Similarity=0.580 Sum_probs=18.2
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+..+
T Consensus 31 ki~v~G~~~vGKSsLi~~l 49 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKL 49 (192)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999998
No 497
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.07 E-value=0.2 Score=51.71 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=18.1
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
-++|+|+.|+|||||+.++
T Consensus 18 ~i~v~G~~~~GKssl~~~l 36 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQF 36 (187)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999
No 498
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.06 E-value=0.29 Score=50.81 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred eEEEccCCCChhhHHHHHHhhhcCCCCCCCCCCceEee
Q psy9513 30 TLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67 (1491)
Q Consensus 30 ~~i~G~NGaGKStl~~~i~~~l~g~~~~~~~~g~~~~~ 67 (1491)
++|+|+.|+|||||+.++ .+...+....+.+...
T Consensus 26 i~~vG~~~~GKSsl~~~l----~~~~~~~~~~~t~~~~ 59 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAF----SKGEIPTAYVPTVFEN 59 (194)
T ss_dssp EEEECSTTSSHHHHHHHH----HHSCCCSSCCCCSEEE
T ss_pred EEEECcCCCCHHHHHHHH----hcCCCCCccCCeeeee
No 499
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.03 E-value=0.21 Score=51.18 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=0.0
Q ss_pred eEEEccCCCChhhHHHHH
Q psy9513 30 TLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 30 ~~i~G~NGaGKStl~~~i 47 (1491)
++|+|+.|+|||||+.++
T Consensus 11 i~v~G~~~~GKssl~~~~ 28 (182)
T 3bwd_D 11 CVTVGDGAVGKTCLLISY 28 (182)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
No 500
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.02 E-value=0.21 Score=52.67 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=0.0
Q ss_pred ceEEEccCCCChhhHHHHH
Q psy9513 29 LTLIVGENGCGKTTIIECI 47 (1491)
Q Consensus 29 ~~~i~G~NGaGKStl~~~i 47 (1491)
+++|.||.||||||++..|
T Consensus 8 ~i~~eG~~gsGKsT~~~~l 26 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Done!