RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9513
(1491 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 96.5 bits (239), Expect = 4e-20
Identities = 108/744 (14%), Positives = 226/744 (30%), Gaps = 210/744 (28%)
Query: 607 ITFDINRIQ---EDINAKEKHLYTLEANVSNSSKTLRDQKRTLAELMDRMELVLGSKPFE 663
+ F+ Q +DI L D K ++ D + +L +
Sbjct: 7 MDFETGEHQYQYKDI---------LSVFEDAFVDNF-DCK----DVQDMPKSILSKE--- 49
Query: 664 DELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEENEPRCPLCTRFFES----DYSVPG 719
E+D + + T LF + + K EE + +F E +Y
Sbjct: 50 -EIDHIIMSKDAVSG-------TLRLFWTLLSKQEE------MVQKFVEEVLRINYKF-- 93
Query: 720 LVNKLKTKIKEIPEQTN-NKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLI 778
L + IK Q + + +I+Q + Q N+ +LQ LR L+
Sbjct: 94 ----LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY--NVSRLQP--YLKLRQALL 145
Query: 779 EL--EENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQ------R 830
EL +NV+ ++ KT ++L L ++ + +
Sbjct: 146 ELRPAKNVL------------IDGVLGSGKTWVALD---VCLSYKVQCKMDFKIFWLNLK 190
Query: 831 ELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQ 890
E+ + ++ +D + + + + + +I S Q L +L +
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELR----RLLKSKPY 243
Query: 891 KN-----------------DIHSKQL--T--------VQGGAGMLKSLEDRKCELEGMDS 923
+N ++ K L T + SL+ L
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---- 299
Query: 924 VYQTELEELGRKVAPIETQLNLAQSEL-DALKKEHKKKLNEEGAKIQDYTKQLEEVKRIK 982
E++ L K L+ +L + + ++L+ I+D + K +
Sbjct: 300 --PDEVKSLLLKY------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 983 LEILNYTKRGTLTQL--AALRESVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEI 1040
+ L +L L A R+ +L+ I I S+ + +
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA---------HIPTILLSLIWFDVIKS 402
Query: 1041 DLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIRE 1100
D+ + L K V K +E +S +K + +++R I +
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTIS---------IPSIY--LELKVKLENEYALHRSIVD 451
Query: 1101 YWTRIYQLKLSEIMISDLTKY--HHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDID 1158
++ +++ L +Y H I +H + + R+ + ++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH------IGHHLKNIEHPERM--TLFRMVFL----- 498
Query: 1159 YISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQ 1218
++R +++K I D ++G +L L K ++
Sbjct: 499 ------------------DFRFLEQK--IRHDSTAWNASGS-ILNTL------QQLKFYK 531
Query: 1219 LIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNASDQ 1278
+ +D ++ + AI F + T+L
Sbjct: 532 PYICDNDPKYERLVNAI----------------LDFLPKIEENLICSKYTDL-------- 567
Query: 1279 KNFQLIVITHDEE-FIENLTAIDR 1301
++ ++ DE F E + R
Sbjct: 568 --LRIALMAEDEAIFEEAHKQVQR 589
Score = 91.5 bits (226), Expect = 1e-18
Identities = 109/715 (15%), Positives = 234/715 (32%), Gaps = 193/715 (26%)
Query: 141 IFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFC-HQENSS----WPL-DEGKKVK 194
+F N C + V +M I +SK ++++I + + W L + +++
Sbjct: 24 VFEDAFVDNFDC---KDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 195 EIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQK 254
+ F E Y + IK ++ Q ++ + + + +L YN+ Q
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQR-------------QPSMMTRMYIEQRDRL-YNDNQV 125
Query: 255 RDQSFEELH-NIEESMKPINEKLVQLTEKERNMSV--MSTQYQTKKTERDMIQESCNELE 311
F + + + + + + L++L +N+ + + + KT + + C +
Sbjct: 126 ----FAKYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLG---SGKTW--VALDVCLSYK 175
Query: 312 SSIKQLFSGDKAELQSKLNLFKINLDEKCSE---LENQERLKSQYIQEEKQSHTHINEAQ 368
++ +F +NL S LE ++L Q H + +
Sbjct: 176 --VQCKMDF---------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 369 MKLGKLERDEETHKKLNDTLKTK--------LNNLADTLCLDT-TAKSQYTPEEGEGLIK 419
+++ +L LK+K L N+ + + + L+
Sbjct: 225 LRI------HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI-------LL- 270
Query: 420 MSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLT 479
TT K ++D F T ++ + E K + ++ +DL
Sbjct: 271 ---TTRFKQVTD-------FLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLP 319
Query: 480 NVITQIN-------------EVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIE 526
+ N + + V KL + I+ L+P + +
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI---IESSLNVLEPAEYR---- 372
Query: 527 AWIRQRNELEDELCVIDAEISILQAQNITLAEIKSL-KNRKESKLADINLLKERHDRAFH 585
++ D L V +I + + + +S + + + + H +
Sbjct: 373 -------KMFDRLSVFPPSA------HIPTILLSLIWFDVIKSDVMVV--VNKLHKYS-- 415
Query: 586 LLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRT 645
L+ E+ K S T I I ++ K ++ Y L ++
Sbjct: 416 LV-----EKQPKES--------TISIPSIYLELKVKLENEYALHRSI------------- 449
Query: 646 LAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIG---KLEENEP 702
+D + + +++ QY + S+IG K E+
Sbjct: 450 --------------------VDHYNIPKTFDSDDLIPPYLDQYFY-SHIGHHLKNIEHPE 488
Query: 703 RCPLCTRFFESDYSVPGLVNKLKTKIKEIPEQTNNKKTHID---QLCKQQRSLQELKPVY 759
R L F D+ L+ KI+ N + ++ QL + + + P Y
Sbjct: 489 RMTLFRMVF-LDFRF------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 760 ENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETPKTK--EKTALSLQ 812
E ++ ++ L ++EEN+I +K L+ AL E+ +Q
Sbjct: 542 ERLVN-------AILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHKQVQ 588
Score = 75.3 bits (184), Expect = 1e-13
Identities = 84/557 (15%), Positives = 171/557 (30%), Gaps = 161/557 (28%)
Query: 14 NFPADKNRVVRFQ------------RPLTLIV--GENGCGKTTIIECIKFALTNEYPQGA 59
N K V R Q RP ++ G G GKT + +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--------VALD----- 169
Query: 60 SSGKNFVHDPRIGKKDEASASSGKNF-VHDPRIGKKDETHAIVKLQCTCENNDTVCVVRS 118
++ K +F + + + ++++
Sbjct: 170 -----VCLSYKVQCK--------MDFKIFWLNLKNCNSPETVLEML----QK-------- 204
Query: 119 LLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFC 178
L + + + D + + K+ +Q L L + E C L+ +L NV
Sbjct: 205 --LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LL-----VLLNV--- 253
Query: 179 HQENSSWPLDEGKKVKEIFD---EIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATL 235
+ K F+ +I T++ + + + I H+ TL
Sbjct: 254 ------Q--N--AKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLD--HHSMTL 298
Query: 236 NYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQL-TEKERNMSVMSTQYQ 294
+ K L+ + D ++L + N + + + E R+ ++
Sbjct: 299 T---PDEVKSLLL----KYLDCRPQDL---PREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 295 TKKTER--DMIQESCNELESS-IKQLFSGDKAELQSKLNLF----KI----------NLD 337
++ +I+ S N LE + +++F +L++F I ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMF--------DRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 338 EKCSELENQERLKSQYIQEEKQSHT-HINEAQMKL-GKLERDEETHKKLNDTLKTKLNNL 395
+ + + K ++++ + T I ++L KLE + H+ + D N+
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-----NI 455
Query: 396 ADTLCLDTTAK---SQY----------TPEEGEGLIKMSQTTIDKYLSDIKILE---RTF 439
T D QY E E + +L D + LE R
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM----VFL-DFRFLEQKIRHD 510
Query: 440 SDNENTKQAEINALIVEKVELESKIKSFKQQIEGNK-------KDLTNVITQINEVNQSQ 492
S N + +N L ++K +K I N + + + +I E
Sbjct: 511 STAWNASGSILNTL--------QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 493 STLQVLQTKLNRVNSEI 509
+L+ L + I
Sbjct: 563 KYTDLLRIALMAEDEAI 579
Score = 53.3 bits (127), Expect = 6e-07
Identities = 56/367 (15%), Positives = 123/367 (33%), Gaps = 71/367 (19%)
Query: 1035 QSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKYHSQKMRSI 1094
+ ++++ K+ L+ E + + + + L+K ++ V +
Sbjct: 36 KDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI----- 89
Query: 1095 NRLIREY---WTRI-YQLKLSEIMISDLTKYHHTLENCV---IKYHSQKMRSINRLIREY 1147
Y + I + + +M + L N KY+ +++ +L
Sbjct: 90 -----NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--- 141
Query: 1148 WTRIYQGNDIDYISIAADVGTG-----SEKRRTYNYRVVQKKNG----IEQDMRNRCSAG 1198
+ + + I +G+G + +Y+V K + + +++N S
Sbjct: 142 -QALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQCKMDFKIFWL--NLKNCNSPE 196
Query: 1199 QRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNC 1258
VL L L+ D H + +I +A + R+++ NC
Sbjct: 197 T-VLEMLQKLLYQIDPNWTSRS--DHSSNIKLRIHSI-QAELRRLLKSKP------YENC 246
Query: 1259 GIFALDEPTTNLDIKNASDQKNF----QLIVITHDEEFIENLTAIDRAYVVRIVRDHKGL 1314
+ L +++NA F ++++ T ++ + L+A + + L
Sbjct: 247 -LLVLL------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTL 298
Query: 1315 SDIHLRSLLSSRLLSRNSKL--------TLYNTIIKPVLLYGSETWSVTKREEHQMQVFE 1366
+ ++SLL L R L +II + G TW K V
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNC 352
Query: 1367 NKVYRTI 1373
+K+ I
Sbjct: 353 DKLTTII 359
Score = 41.8 bits (97), Expect = 0.002
Identities = 45/261 (17%), Positives = 86/261 (32%), Gaps = 81/261 (31%)
Query: 1269 NLDIKNASDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKGLSDIHLRSLLSSR-- 1326
++D + Q ++ I+ ++ F++N D K + D+ +S+LS
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNF-------------DCKDVQDM-PKSILSKEEI 51
Query: 1327 ---LLSRNSKLTLYNTIIKPVLLYGSETWSVTKREEHQMQVFENKV----YRTIFGPY-- 1377
++S+++ L+ W++ ++E +Q F +V Y+ + P
Sbjct: 52 DHIIMSKDAVSGTL-------RLF----WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 1378 FDHQTQSWKRRHNSDIHALSKQPNIVATMNTNR------LRWLGHLMRIDKNRAVWKIFT 1431
Q R + L + A N +R LR L+ + + V
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--QALLELRPAKNV----- 153
Query: 1432 NTPHQGKRLPGRPRSC--------------------WINEMKRLCNRWGLNDWEELTQHR 1471
G + G ++ W+N +K CN L +
Sbjct: 154 -LID-G--VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN-CNS----PETVLEMLQ 203
Query: 1472 VLWRQAV--WFSRNSHIPNTP 1490
L Q W SR+ H N
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIK 224
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 64.9 bits (158), Expect = 2e-10
Identities = 44/264 (16%), Positives = 101/264 (38%), Gaps = 29/264 (10%)
Query: 721 VNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIEL 780
+L+ + K++ +Q + + +++ ++ LQ K + +K + DI + + +L
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 781 EENVIETKGELKKLKTAL----ETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQE 836
+ + + L T L E K K + ++ L+ +++ ++ELE+ +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
Query: 837 SKISG-MRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIH 895
K+ G + ++ AQ E K +L ++++ RL + + K+
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK----- 1117
Query: 896 SKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKK 955
++ LE +L+ +LE E Q EL+ALK
Sbjct: 1118 ------------IRELESHISDLQ-------EDLESEKAARNKAEKQKRDLSEELEALKT 1158
Query: 956 EHKKKLNEEGAKIQDYTKQLEEVK 979
E + L+ + + ++
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDD 1182
Score = 61.8 bits (150), Expect = 1e-09
Identities = 54/291 (18%), Positives = 108/291 (37%), Gaps = 36/291 (12%)
Query: 855 QQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDR 914
+ + K EL + + + + L +K L ++KN + K L++ +
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK----------LQAETEL 907
Query: 915 KCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQ 974
E E M + +EL + +E ++ + L+ E KKK+ ++ + D +Q
Sbjct: 908 YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE-KKKMQQQ---MLDLEEQ 963
Query: 975 LEEVK--RIKLEILNYTKRGTL----TQLAALRESVQKLNQRKE-------DIIAKRGVC 1021
LEE + R KL++ T G + + + + KL + ++ D+
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 1022 ERTINEINQSIANQSLEEIDLKNNLTLLEK-----KEAVAKLNEELKLSEIMISDLTKYH 1076
E + + +L+ L EK ++ KL E I++L
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 1077 HTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLEN 1127
L+ + K + ++ RL E + LK I +L + L+
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALK----KIRELESHISDLQE 1130
Score = 61.8 bits (150), Expect = 2e-09
Identities = 51/374 (13%), Positives = 131/374 (35%), Gaps = 58/374 (15%)
Query: 520 QLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLADINLLKER 579
+ K + + ELE + + E ++LQ + AE + +E ++ +E
Sbjct: 868 RTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ--AETELYAEAEEMRVRLAAKKQEL 925
Query: 580 HDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTL 639
+ + + EE L + + ++E + +E L+ + +
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Query: 640 RDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLEE 699
+ + + + ED+ +++T E K +E VS +T+ L E
Sbjct: 986 KKMEDDILIM-------------EDQNNKLTKERKLLEERVSDLTT----------NLAE 1022
Query: 700 NEPRCPLCTRFFESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVY 759
E + L + + + + + K ++ L+++K
Sbjct: 1023 EEEK-----------------AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065
Query: 760 ENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLD 819
E I L++++ EL+ + + + EL+ LE + + +
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED-------------ETSQKN 1112
Query: 820 QNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNS 879
++++ L+ + + + ++ ++ Q+++ EL ++++E +
Sbjct: 1113 NALKKIRELESHISDLQEDLESEKA---ARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169
Query: 880 HNEKLQSLQKQKND 893
E S K +D
Sbjct: 1170 QQELRGSDYKDDDD 1183
Score = 60.6 bits (147), Expect = 4e-09
Identities = 57/360 (15%), Positives = 137/360 (38%), Gaps = 37/360 (10%)
Query: 216 QRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEK 275
+ +E+ K Q KE + K + ++++ E+L E E
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQL---CEEKNLLQEKLQAETELYAEAEEM 914
Query: 276 LVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKIN 335
V+L K++ + + + + + + +E +L++ +K ++Q ++ +
Sbjct: 915 RVRLAAKKQELEEILHEMEAR---IEEEEERSQQLQA--------EKKKMQQQMLDLEEQ 963
Query: 336 LDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNL 395
L+E+ + + + K + I + + + +E K L+ ++++L
Sbjct: 964 LEEEEAARQKLQLEKVTADGK-------IKKMEDDILIMEDQNNKLTKERKLLEERVSDL 1016
Query: 396 ADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQ---AEINA 452
L + T + + ++ I + +K E++ + E K+ E +
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNK-----HESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 453 LIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQL 512
L + EL+++I K Q+ +++L + ++ + S K+ + S I L
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLED---ETSQKNNALKKIRELESHISDL 1128
Query: 513 SKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLAD 572
+ L + K +Q+ +L +EL + E L+ T A + L+ D
Sbjct: 1129 QEDL--ESEKAARNKAEKQKRDLSEELEALKTE---LEDTLDTTATQQELRGSDYKDDDD 1183
Score = 57.9 bits (140), Expect = 3e-08
Identities = 56/340 (16%), Positives = 128/340 (37%), Gaps = 49/340 (14%)
Query: 742 IDQLCKQQRSLQELKPVYENIMKLQD--TDIPSLRSKLIELEENVIETKGEL-KKLKTAL 798
I L K R +E++ E + + ++ + +L + + E K L +KL+
Sbjct: 846 IXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAET 905
Query: 799 ETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQ-----------ESKISGMRSTGV 847
E E+ + L L++ + E+ E E + + ++ +
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 848 DLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSK----QLTVQG 903
+ + + + +K + KI+ + + ++ L K++ + + +
Sbjct: 966 EEEAARQKLQLEKVTAD---GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 904 GAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNE 963
K+L K + E M S + L++ + ++ EL+ +K++ + + ++
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEK-----------SRQELEKIKRKLEGESSD 1071
Query: 964 EGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCER 1023
+I + Q+ E+K QLA E +Q R ED +++ +
Sbjct: 1072 LHEQIAELQAQIAELKA---------------QLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 1024 TINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEELK 1063
I E+ I++ + K EK+ L+EEL+
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQ--KRDLSEELE 1154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.7 bits (157), Expect = 2e-10
Identities = 101/609 (16%), Positives = 183/609 (30%), Gaps = 203/609 (33%)
Query: 679 EVSMMTSTQYLFN------SYIGKLEE--------NEPRCP--LCTRFFESDYSVPGLVN 722
E ++ T F + L E +EP P L +F G V+
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL-------GYVS 69
Query: 723 KLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEE 782
L +K DQ+ L E + Y L+ DI +L +KL++ +
Sbjct: 70 SLVEP---------SKVGQFDQVLN--LCLTEFENCY-----LEGNDIHALAAKLLQEND 113
Query: 783 NVIETKGELKK----LKTALETPKTK-EKTAL---------SL------QGD-LTLLDQN 821
+ EL K + + P K +AL L QG+ ++
Sbjct: 114 TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE- 172
Query: 822 IREL----------------NTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNT 865
+R+L TL EL R + + G+++ + L + + +
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLS-ELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDY 230
Query: 866 FRSKIES----GQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLK--------SLED 913
S S G +L + + L ++ S ++G G + + D
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY---LKGATGHSQGLVTAVAIAETD 287
Query: 914 RKCELEGMDSVYQTELEEL------GRKVAPIETQLNLAQSEL-DALKKEHKKKLNEEGA 966
E + + L + P +L S L D+L+ N EG
Sbjct: 288 ---SWESFFVSVRKAITVLFFIGVRCYEAYP---NTSLPPSILEDSLE-------NNEGV 334
Query: 967 K-----IQDYTK-QLEEV-----------KRIKLEILNYTKR-----GTLTQLAALRESV 1004
I + T+ Q+++ K++++ ++N + G L L ++
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQSLYGLNLTL 393
Query: 1005 QKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEIDLKNN-LT--------LLEKKEAV 1055
+K A G ++QS S ++ N L LL A
Sbjct: 394 RKAK-------APSG--------LDQSRIPFSERKLKFSNRFLPVASPFHSHLLV--PAS 436
Query: 1056 AKLNEELKLSEIMI--SDLTK--YH-HTLENCVIKYHSQKMRSINRLIRE---YWTRIYQ 1107
+N++L + + D+ Y + + I I W Q
Sbjct: 437 DLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 1108 LKLSEIM---------ISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDID 1158
K + I+ + LT +R R+ +D
Sbjct: 496 FKATHILDFGPGGASGLGVLT---------------------HRNKDGTGVRVIVAGTLD 534
Query: 1159 YISIAADVG 1167
I+ D G
Sbjct: 535 -INPDDDYG 542
Score = 63.1 bits (153), Expect = 7e-10
Identities = 80/580 (13%), Positives = 161/580 (27%), Gaps = 212/580 (36%)
Query: 1031 SIANQSLE-EIDLKNNL-------------TLLEKKEAVAKLNEELKLSEIMISDLTKYH 1076
++++ SLE + + L E E A +E +E+ + K+
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL----VGKFL 65
Query: 1077 HTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQK 1136
+ + V + + L + Y L+ ++I H L +++ +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCY-LEGNDI---------HALAAKLLQENDTT 115
Query: 1137 MRSINRLIREYW--------------------------TRIY-----QGNDIDYISIAAD 1165
+ LI+ Y ++ QGN DY
Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF----- 170
Query: 1166 VGTGSEKRRTYN-YRVVQKKNGIEQDMRNRCSAGQRVLACLI------IRLFISDQKNFQ 1218
E R Y Y + D+ + L+ LI ++F +
Sbjct: 171 ----EELRDLYQTYH------VLVGDLIKFSAE---TLSELIRTTLDAEKVF---TQGLN 214
Query: 1219 LI------VITHDEEFIEN---------LTAIDRAYVVRIVRDHKALAETFSRNCGIFAL 1263
++ T D++++ + + + YVV E S G
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLLGFTPGELRSYLKGATGH 273
Query: 1264 DEPTTNLDIKNASDQKNFQLIVITH---DEEFIEN-LTAID----------RAY------ 1303
+ + A + I E F + AI AY
Sbjct: 274 SQ-----GLVTA--------VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320
Query: 1304 --VVRIVRDH-----------KGLSDIHLRSLLSS--RLLSRNSKL--TLYNT----IIK 1342
++ ++ L+ ++ ++ L ++ +L N ++
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 1343 --PVLLYGSETWSVTKREEH------QMQV-FENK----VYR--TIFGPYFDHQTQSWKR 1387
P LYG R+ Q ++ F + R + P+ H
Sbjct: 381 GPPQSLYGLNLT---LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--H------- 428
Query: 1388 RHNSDIHALSK-QPNIVATMNTNRLRWLGHLMRIDKNRAVWKIFTNTPHQGKRLPGRPRS 1446
S + L I + N + + ++I V+ F G L R
Sbjct: 429 ---SHL--LVPASDLINKDLVKNNVSFNAKDIQI----PVYDTFD-----GSDL----RV 470
Query: 1447 CWINEMKRLCNRWGLNDWEELTQHRVLWRQAVWFSRNSHI 1486
+ +R+ + + + V W F +HI
Sbjct: 471 LSGSISERIV--------DCIIRLPVKWETTTQFK-ATHI 501
Score = 58.5 bits (141), Expect = 2e-08
Identities = 83/549 (15%), Positives = 169/549 (30%), Gaps = 168/549 (30%)
Query: 309 ELESSI----------KQLFSGDKAELQSKLNLFKINL---DEKCSELENQERLKSQYI- 354
LE + QL + + L DE + E L +++
Sbjct: 15 SLEHVLLVPTASFFIASQL----QEQFNKILPEPTEGFAADDEPTTPAE----LVGKFLG 66
Query: 355 ----QEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQYT 410
E ++ + L L E + + ND ++ LA L
Sbjct: 67 YVSSLVEPSKVGQFDQV-LNLC-LTEFENCYLEGND-----IHALAAKL----------- 108
Query: 411 PEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKS-FKQ 469
+E + + ++ I Y++ + +R F N +AL E +++ + F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSN------SALFRAVGEGNAQLVAIFGG 162
Query: 470 QIEGNK----KDL-------TNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQL-SKSLD 517
Q GN ++L ++ + + S TL +L R + +++ ++ L+
Sbjct: 163 Q--GNTDDYFEELRDLYQTYHVLVGDL--IKFSAETLS----ELIRTTLDAEKVFTQGLN 214
Query: 518 PDQLKNEIEAWIRQRNELEDELCVIDAEIS-----ILQ-AQNITLAEIKSLKNRKESKLA 571
I W+ + D+ ++ IS ++Q A + A++ E
Sbjct: 215 -------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF-TPGE---- 262
Query: 572 DINLLKERHDRAFHLLFDMIP---------EENFKNSLDKALSSITFDIN-RIQEDINAK 621
L+ A ++ E+F S+ KA+ ++ F I R E
Sbjct: 263 ----LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI-TVLFFIGVRCYE----- 312
Query: 622 EKHLYTLEANVSNSSKTLRDQKRTLAELMDRMELVLG--SKPFEDELDRVTLELKREQE- 678
Y N S L D + M + + +D +++ L ++
Sbjct: 313 ---AY---PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV 366
Query: 679 EVSMMTSTQ-----------YLFNSYIGKL----EENEPRCPLC-------TRF------ 710
E+S++ + Y N + K ++ R P RF
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 711 FESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELK-PVY-----ENIMK 764
F S L I + + ++++ PVY ++
Sbjct: 427 FHSHL--------LVPASDLINKDLVKNNVSFNA--------KDIQIPVYDTFDGSDLRV 470
Query: 765 LQDTDIPSL 773
L + +
Sbjct: 471 LSGSISERI 479
Score = 55.1 bits (132), Expect = 2e-07
Identities = 77/524 (14%), Positives = 155/524 (29%), Gaps = 162/524 (30%)
Query: 217 RDRLRKEIP----------------EIKAHYQATLNY------KKEADSKKQLIYNNTQK 254
+++ K +P E+ + L Y + Q++ +
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVEPSKVGQFDQVLNLCLTE 90
Query: 255 RDQSF---EELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELE 311
+ + ++H + + N+ T + ++ R M + ++
Sbjct: 91 FENCYLEGNDIHALAAKLLQEND-----TTLVKTKELIKNYITA----RIMAKRPFDKKS 141
Query: 312 SSIKQLFSGDKAELQSKLNLFKI-----NLDEKCSELENQERLKSQYIQEEKQSHTH--I 364
+S LF +A + L I N D+ EL + + + I
Sbjct: 142 NSA--LF---RAVGEGNAQLVAIFGGQGNTDDYFEEL--------RDLYQTYHVLVGDLI 188
Query: 365 NEAQMKLGKLERDEETHKKL-------------------NDTLKT-----KLNNLADTLC 400
+ L +L R +K+ D L + L +
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Query: 401 LDTTAKSQ-YTPEE-----------GEGL-----IKMSQTTIDKYLSDIKILERTFSDNE 443
TAK +TP E +GL I + + ++S K + F
Sbjct: 249 YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF--- 305
Query: 444 NTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQIN-EVNQSQST--LQVLQT 500
+ + + N L I + + E N+ + L +
Sbjct: 306 --------------IGVRC------YEAYPNT-SLPPSILEDSLENNEGVPSPMLSISNL 344
Query: 501 KLNRVNSEIDQLSKSLDPDQ-----LKNEIEAWIRQRNELEDELCVIDAEISILQAQNIT 555
+V +++ + L + L N +N V+ L N+T
Sbjct: 345 TQEQVQDYVNKTNSHLPAGKQVEISLVNG------AKN------LVVSGPPQSLYGLNLT 392
Query: 556 LAEIKSLKNRKESKLADINLLKERHDRAFHLLFDMI--PEENFKNS--LDKALSSITFDI 611
L + K+ +S++ ER + F F + P F +S L A I D+
Sbjct: 393 LRKAKAPSGLDQSRI----PFSERKLK-FSNRFLPVASP---F-HSHLLVPASDLINKDL 443
Query: 612 NRIQEDINAKEKHLYTLEANV--SNSSKTLRDQKRTLAELMDRM 653
+ NAK+ ++ V + LR +++E +
Sbjct: 444 VKNNVSFNAKD-----IQIPVYDTFDGSDLRVLSGSISERIVDC 482
Score = 53.1 bits (127), Expect = 7e-07
Identities = 96/631 (15%), Positives = 171/631 (27%), Gaps = 244/631 (38%)
Query: 772 SLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRE 831
S R + L +E L P TA L +Q + L
Sbjct: 5 STRP--LTLSHGSLEH---------VLLVP-----TASFFIAS-QLQEQFNKILPEPTEG 47
Query: 832 LERQESKIS---------GMRSTGVD------LDQVLAQQKEKKNELNTFRSKIESGQTR 876
+ + G S+ V+ DQVL L F +
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL------NLCLTEFENCY------ 95
Query: 877 LNSHNEKLQSLQKQKNDIHS-------------------------------KQLTVQGGA 905
L+ NDIH+ + + +
Sbjct: 96 -------LEG-----NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 906 GMLKSLEDRKCEL------EGMDSVYQTELEELGRKVAP-IETQLNLAQSELDALKKEHK 958
+ +++ + +L +G Y EL +L + + + + L L +
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 959 --KKLNEEGAKIQDYTKQLEEVKR-----------IKLEILNYTKRGTLTQLA------- 998
+K+ +G I ++ LE I ++ + QLA
Sbjct: 204 DAEKVFTQGLNILEW---LENPSNTPDKDYLLSIPISCPLI------GVIQLAHYVVTAK 254
Query: 999 -------ALRESVQKLNQRKEDII-----------------AKR--------GV-CERT- 1024
LR ++ + ++ ++ GV C
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAY 314
Query: 1025 -INEINQSIANQSLEE----------IDLKNNLTLLEKKEAVAKLNEELKLSE-IMISDL 1072
+ SI SLE I +NLT + ++ V K N L + + IS L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSI---SNLTQEQVQDYVNKTNSHLPAGKQVEIS-L 370
Query: 1073 TKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIK- 1131
+ +N V+ Q + +N +R K D ++ +
Sbjct: 371 ---VNGAKNLVVSGPPQSLYGLNLTLR---------KAKAPSGLDQSRIPFSERKLKFSN 418
Query: 1132 --------YHSQKMRSINRLIREYWTRI---YQGNDID---YISIAADVGTGSEKRRTYN 1177
+HS + + LI + + + DI Y D GS
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-----DTFDGS------- 466
Query: 1178 YRVVQKKNGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIV---ITHDEEF------ 1228
D+R + + IIRL + ++ TH +F
Sbjct: 467 ------------DLRVLSGSISERIVDCIIRLPV----KWETTTQFKATHILDFGPGGAS 510
Query: 1229 -IENLTA-IDRAYVVRIVRDHKALAETFSRN 1257
+ LT VR++ +A T N
Sbjct: 511 GLGVLTHRNKDGTGVRVI-----VAGTLDIN 536
Score = 47.4 bits (112), Expect = 5e-05
Identities = 34/252 (13%), Positives = 77/252 (30%), Gaps = 83/252 (32%)
Query: 897 KQLTVQGGAGMLKSLEDR----KCELEGMDSVYQTE--LEELGRKVAPI-----ETQLNL 945
LT+ G K + + E +D +TE +E+ + L+
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 946 ---AQ--------SELDALKKEHKKKLNEEGAKIQD----------YT--------KQLE 976
Q + + LK +G D Y +E
Sbjct: 1729 TQFTQPALTLMEKAAFEDLK--------SKGLIPADATFAGHSLGEYAALASLADVMSIE 1780
Query: 977 EVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKR------GVCERTINEINQ 1030
+ +E++ Y RG Q+A R+ + + N +IA + + + +
Sbjct: 1781 SL----VEVVFY--RGMTMQVAVPRDELGRSNYG---MIAINPGRVAASFSQEALQYVVE 1831
Query: 1031 SIANQSLEEIDLKN-NLTLLE--------KKEAVAKLNEELKLSEIMISDLTKYHHTLEN 1081
+ ++ +++ N N+ E A+ + L ++ D+ + +L
Sbjct: 1832 RVGKRTGWLVEIVNYNV---ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL-- 1886
Query: 1082 CVIKYHSQKMRS 1093
+++
Sbjct: 1887 -----SLEEVEG 1893
Score = 41.6 bits (97), Expect = 0.002
Identities = 53/280 (18%), Positives = 86/280 (30%), Gaps = 132/280 (47%)
Query: 576 LKERHDRAFHLLFDMIPEENFK-----NSLDKALSSITFD-----INRIQ---------- 615
++E + ++F+ I + K +++ +S TF ++ Q
Sbjct: 1684 IRENYSA---MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 616 ----EDINAKEK-----------H-L--YTLEANVSNSSKTLRDQKRTLAELMDRMELVL 657
ED+ K K H L Y A S LA++M
Sbjct: 1741 KAAFEDL--KSKGLIPADATFAGHSLGEYA--ALAS------------LADVM------- 1777
Query: 658 GSKPFEDELDRVTLEL--KREQEEVSMMTSTQYLFNSYIGKLEENE-PRCPLCTRFFESD 714
E +E+ R G + PR L S+
Sbjct: 1778 ---SIES-----LVEVVFYR-------------------GMTMQVAVPRDELG----RSN 1806
Query: 715 YSV----PGLVNK------LKTKIKEIPEQTN------NKKTHIDQLCKQQ-------RS 751
Y + PG V L+ ++ + ++T N + QQ R+
Sbjct: 1807 YGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-----YNVENQQYVAAGDLRA 1861
Query: 752 LQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGEL 791
L + V N +KLQ DI L+ L LE E +G L
Sbjct: 1862 LDTVTNVL-NFIKLQKIDIIELQKSL-SLE----EVEGHL 1895
Score = 39.3 bits (91), Expect = 0.014
Identities = 59/343 (17%), Positives = 106/343 (30%), Gaps = 119/343 (34%)
Query: 220 LRKEIPEIKA-------HYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPI 272
L K + H++ T + S ++ NN +H E K I
Sbjct: 1635 LYKTSKAAQDVWNRADNHFKDTYGF-----SILDIVINNPVNL-----TIHFGGEKGKRI 1684
Query: 273 NEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNEL-ESSIKQLFSGDKAELQSKLN- 330
E N S M ++T + ++ E+ E S F +K L +
Sbjct: 1685 RE----------NYSAMI--FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT 1732
Query: 331 ---LFKINLDEKCSELENQERLKSQYIQEEKQS---HTHINEAQMKLGKLERDEETHKKL 384
L + + E LKS+ + + H+ LG E
Sbjct: 1733 QPALTLMEK----AAF---EDLKSKGLIPADATFAGHS--------LG------EY---- 1767
Query: 385 NDTLKTKLNNLADTLCLDTTAK--------SQYTPEEGE------GLIKMSQTTIDKYLS 430
L +LAD + +++ + Q E G+I ++ + S
Sbjct: 1768 -----AALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 431 D---IKILERTFSDNENTKQAEI---NALIVEKVELESKIKSFKQQ--IEGNKKDLTNVI 482
++ER EI N E+ QQ G+ + L V
Sbjct: 1823 QEALQYVVERV--GKRTGWLVEIVNYNV--------EN------QQYVAAGDLRALDTVT 1866
Query: 483 TQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEI 525
+N + KL ++ +I +L KSL ++++ +
Sbjct: 1867 NVLNFI------------KLQKI--DIIELQKSLSLEEVEGHL 1895
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 62.2 bits (151), Expect = 5e-10
Identities = 39/306 (12%), Positives = 88/306 (28%), Gaps = 45/306 (14%)
Query: 12 IRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
+ NF + N ++F++ + I+GENG GK++I E + FAL
Sbjct: 10 MNNFKSHVNSRIKFEKGIVAIIGENGSGKSSIFEAVFFALFGA--------------GSN 55
Query: 72 GKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCA 131
D K + + + N + ++R
Sbjct: 56 FNYDTIITKG------------KKSVYVELDFEV---NGNNYKIIREY-------DSGRG 93
Query: 132 TRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDE-G 190
+ K +AT + + ++GV + + N I+ Q + L
Sbjct: 94 GAKLYKNGKPYATTISAVNK--------AVNEILGVDRNMFLNSIYIKQGEIAKFLSLKP 145
Query: 191 KKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYN 250
+ E ++ ++ K + + K + I+ K + +
Sbjct: 146 SEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEK 205
Query: 251 NTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNEL 310
+K + E L + + + + + ++ E +
Sbjct: 206 EKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDF 265
Query: 311 ESSIKQ 316
E +
Sbjct: 266 EVRVHA 271
Score = 32.5 bits (74), Expect = 0.97
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 11/60 (18%)
Query: 1255 SRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAIDRAYVVR 1306
LDEPT LD + + Q+I+ITH E + D V+
Sbjct: 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELED---VADVIINVK 359
Score = 29.4 bits (66), Expect = 9.2
Identities = 14/180 (7%), Positives = 60/180 (33%), Gaps = 6/180 (3%)
Query: 722 NKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELE 781
+ K+ + + + +++ + + + ++ N + ++ +I S +
Sbjct: 91 GRGGAKLYKNGKPYATTISAVNKAVNEILGVD--RNMFLNSIYIKQGEIAKFLSLKPSEK 148
Query: 782 ENVIETKGELKKLKTALETPKTKEKTALS----LQGDLTLLDQNIRELNTLQRELERQES 837
+ + + + + K ++G+L +++++ LE+++
Sbjct: 149 LETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKE 208
Query: 838 KISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSK 897
K++ + ++ + + + I+ S + S + D +
Sbjct: 209 KLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVR 268
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 59.2 bits (144), Expect = 7e-10
Identities = 34/218 (15%), Positives = 74/218 (33%), Gaps = 36/218 (16%)
Query: 12 IRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
++NF + + VV F+ + LI+G+NG GK+++++ I L F ++
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFT---KV 64
Query: 72 GKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCA 131
G +D + L + + R L +G+ +
Sbjct: 65 GARD-----------------------TYIDLIFEK-DGTKYRITRRFLKGYSSGEIHAM 100
Query: 132 TRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGK 191
R K K + ++ + I N I+ Q L+ +
Sbjct: 101 KRLVGNEWKHVTEPSSKAISAFMEK---------LIPYNIFLNAIYIRQGQIDAILESDE 151
Query: 192 KVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKA 229
+++ E+ + K+ A + + + + I E +
Sbjct: 152 AREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRD 189
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 60.1 bits (145), Expect = 2e-09
Identities = 40/291 (13%), Positives = 92/291 (31%), Gaps = 39/291 (13%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGK 63
L+++ + R+ + VV F+ + LI+G+NG GK+++++ I L
Sbjct: 3 LERVTVKNFRSH---SDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKD 59
Query: 64 NFVHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSN 123
F K + L ++ + R L
Sbjct: 60 EFT--------------------------KVGARDTYIDLIFE-KDGTKYRITRRFLKGY 92
Query: 124 KNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENS 183
+G+ + R K K + ++ + I N I+ Q
Sbjct: 93 SSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEK---------LIPYNIFLNAIYIRQGQI 143
Query: 184 SWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADS 243
L+ + +++ E+ + K+ A + + + I+ + ++ A S
Sbjct: 144 DAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALS 203
Query: 244 KKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQ 294
K + + + + + + V KER ++ +S +
Sbjct: 204 KIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGER 254
Score = 42.0 bits (98), Expect = 0.001
Identities = 38/280 (13%), Positives = 81/280 (28%), Gaps = 57/280 (20%)
Query: 1032 IANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENC--VIKYHSQ 1089
+ S EI L E K ++ + + + + + I +
Sbjct: 89 LKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILE 148
Query: 1090 KMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWT 1149
+ +++RE + + + + +S+L E + K K + + +
Sbjct: 149 SDEAREKVVREVL-NLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKI-- 205
Query: 1150 RIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLACLIIRL 1209
++I + R+ G E+ S G+R+ L RL
Sbjct: 206 -GELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERP-LTFLSGGERIALGLAFRL 263
Query: 1210 FISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTN 1269
A++ + + LDEPT
Sbjct: 264 ---------------------------------------AMSLYLAGEISLLILDEPTPY 284
Query: 1270 LD----------IKNASDQKNFQLIVITHDEEFIENLTAI 1299
LD ++ + Q+I+++HDEE + +
Sbjct: 285 LDEERRRKLITIMERYLKKIP-QVILVSHDEELKDAADHV 323
Score = 31.9 bits (72), Expect = 1.7
Identities = 42/293 (14%), Positives = 94/293 (32%), Gaps = 34/293 (11%)
Query: 959 KKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIA-K 1017
L + K ++TK I L + +T+ S +++ K +
Sbjct: 49 WPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRITRRFLKGYSSGEIHAMKRLVGNEW 108
Query: 1018 RGVCERTINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHH 1077
+ V E + I+ + I L + +A+ + +E + + +L K+
Sbjct: 109 KHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFET 168
Query: 1078 TLENCVIKYHSQKMR-SINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQK 1136
+ + +++Y + LS+I + E KY
Sbjct: 169 AYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTE---GKYSEVV 225
Query: 1137 MRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTY------NYRVVQKKNGI--- 1187
+R+ +R + + + ++S G E+ + + +
Sbjct: 226 VRAEENKVRLFVVWEGKERPLTFLS-------GGERIALGLAFRLAMSLYLAGEISLLIL 278
Query: 1188 -----EQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAI 1235
D R R L ++ R +K Q+I+++HDEE + +
Sbjct: 279 DEPTPYLDEERR-----RKLITIMERYL---KKIPQVILVSHDEELKDAADHV 323
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB:
1f2u_A* 1us8_A*
Length = 149
Score = 55.8 bits (135), Expect = 4e-09
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 12 IRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
++NF + + VV F+ + LI+G+NG GK+++++ I L F ++
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFT---KV 64
Query: 72 GKKD 75
G +D
Sbjct: 65 GARD 68
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 56.3 bits (136), Expect = 8e-08
Identities = 36/237 (15%), Positives = 79/237 (33%), Gaps = 20/237 (8%)
Query: 779 ELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLT--LLDQNIRELNTLQRELERQE 836
L E+ + + A K + LQ + + +++L R +ER +
Sbjct: 861 MLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYK 920
Query: 837 SKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIE-SGQTRLNSHNEKLQSLQKQKNDIH 895
G+ + + L + + +Q ++ L + +E + T ++ L+ + +
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Query: 896 SKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKK 955
+ + SL++ +L QTE + + + + SEL
Sbjct: 981 NAT-------NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 956 EHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKE 1012
K + E +I D K++ E KL + L + R +
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLV----------EETKQLELDLNDERLRYQ 1080
Score = 44.7 bits (106), Expect = 2e-04
Identities = 29/172 (16%), Positives = 71/172 (41%), Gaps = 19/172 (11%)
Query: 449 EINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSE 508
+ + LE+KI +++I+ K+ +++ ++N + + T+ ++ S+
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT------YSTETEKLRSD 968
Query: 509 IDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITLAE-IKSLKNRKE 567
+++L S + E + + L++E+ + E+ Q + T+ E K+ E
Sbjct: 969 VERLRMSEE------EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 568 SKLAD----INLLKERHDRAFHLLFDMIPE--ENFKNSLDKALSSITFDINR 613
+++ LLK + + D E E + L + + D+N
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 44.7 bits (106), Expect = 2e-04
Identities = 31/178 (17%), Positives = 66/178 (37%), Gaps = 18/178 (10%)
Query: 723 KLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEE 782
KLK + + + +++ + QR + E K SL K+ LE
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQ----NKEYK-------SLLEKMNNLEI 956
Query: 783 NVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGM 842
+L+ L E+ A + + L + E+ L++EL + +++ +
Sbjct: 957 TYSTETEKLRSDVERLR---MSEEEAKNATNRVLSLQE---EIAKLRKELHQTQTEKKTI 1010
Query: 843 RSTGVDLDQVLAQQKEKKNELNT-FRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQL 899
Q + E NT +++ E R++ +++ ++K +KQL
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQL 1068
Score = 43.9 bits (104), Expect = 4e-04
Identities = 21/164 (12%), Positives = 68/164 (41%), Gaps = 9/164 (5%)
Query: 722 NKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELE 781
L+ KI ++ + + + L ++ +L+ ++ + +
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 782 ENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISG 841
V+ + E+ KL+ L +T++K T+ + + + ++ + + + +
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKK---------TIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 842 MRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQ 885
+++ +L++ + Q ++ E + E+ Q L+ ++E+L+
Sbjct: 1035 LKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 38.9 bits (91), Expect = 0.014
Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 7/166 (4%)
Query: 238 KKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKK 297
K EA S ++ + ++ + I+E K L ++ E S + + ++
Sbjct: 910 KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969
Query: 298 TERDMIQESCNELESSIKQLFSGDKAELQSKLNLF---KINLDEKCSELENQ-ERLKSQY 353
M +E + + L + A+L+ +L+ K ++E + +++ E+L S+
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQE-EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028
Query: 354 IQEEKQSHTHINEAQMKLGKLERD--EETHKKLNDTLKTKLNNLAD 397
++ T E ++ ++ E KKL + K +L D
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 38.9 bits (91), Expect = 0.015
Identities = 30/264 (11%), Positives = 87/264 (32%), Gaps = 20/264 (7%)
Query: 883 KLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQ 942
++ ++K+ + + +Q +L+ R + +++ R
Sbjct: 827 RMYVVRKRYQCMRDATIALQA---LLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 943 LNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRE 1002
++ + + E K++ + +E K++ + + N ++ L+
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLEN--------KIMQLQR 935
Query: 1003 SVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEEL 1062
+ + N+ + ++ K E T + + + +S E + V L EE+
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKL--RSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 1063 KLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYH 1122
+ T+E KY + + ++ L + L + +L +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ-------NTLLKTEKEELNRRI 1046
Query: 1123 HTLENCVIKYHSQKMRSINRLIRE 1146
H + + +K+ + +
Sbjct: 1047 HDQAKEITETMEKKLVEETKQLEL 1070
Score = 38.9 bits (91), Expect = 0.016
Identities = 31/226 (13%), Positives = 87/226 (38%), Gaps = 16/226 (7%)
Query: 190 GKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPE-----IKAHYQATLNYKKEADSK 244
V++ + + DAT +AL + R++ + + E I+ H + L +
Sbjct: 828 MYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTL 887
Query: 245 KQLIYNNTQKRD-QSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMI 303
K ++Y R + EL ++ + + E + + + + E +
Sbjct: 888 KAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSL 947
Query: 304 QESCNELESSIKQLFSGDKAELQSKLNLFK---------INLDEKCSELENQ-ERLKSQY 353
E N LE + +++++ + ++L E+ ++L + + +++
Sbjct: 948 LEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 354 IQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTL 399
E+ + + +E + + +L+ K + L ++++ A +
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 51.8 bits (124), Expect = 9e-07
Identities = 43/310 (13%), Positives = 93/310 (30%), Gaps = 36/310 (11%)
Query: 12 IRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
+RNF KN + FQ +T++ G NG GK+++ E I FAL R
Sbjct: 8 VRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGN-------------GIRY 54
Query: 72 GKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCA 131
+ + A + Q ++R + + +
Sbjct: 55 PNSYDYVNR------------NAVDGTARLVFQFER-GGKRYEIIREINALQRKHNAKLS 101
Query: 132 TRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGK 191
+ A +++ ++G+ +F Q L
Sbjct: 102 EILENGKKAAIAAKPTSVKQEVEK--------ILGIEHRTFIRTVFLPQGEIDKLLISPP 153
Query: 192 KVKE-IFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYN 250
I ++F + + + LE + ++ + + A + +K+ N
Sbjct: 154 SEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSGGAGGAGGSLEKKLKEMSDEYNN 213
Query: 251 NTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNEL 310
R F++ + + E +++ T+ ++ E+ +
Sbjct: 214 LDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGI 273
Query: 311 ESSIKQLFSG 320
E + L SG
Sbjct: 274 ERPARGL-SG 282
>3kta_A Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xex_A* 1xew_X*
Length = 182
Score = 48.7 bits (117), Expect = 2e-06
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGAS 60
M +++L + G +++ +K V+ F + T IVG NG GK+ I + I F L G
Sbjct: 1 MPYIEKLELKGFKSY-GNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVL------GGL 53
Query: 61 SGKN 64
S K
Sbjct: 54 SAKA 57
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral
protein complex, cell cycle; 2.30A {Homo sapiens} PDB:
2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Length = 704
Score = 47.6 bits (112), Expect = 3e-05
Identities = 45/284 (15%), Positives = 101/284 (35%), Gaps = 16/284 (5%)
Query: 744 QLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETPKT 803
+ +Q +Q + + + + +L + L L L+E K K + +
Sbjct: 428 RSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPS 487
Query: 804 KEKTALSLQGDL----TLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVL-----A 854
E L+ + T+LD+ ++ ++ + I + +L+ + A
Sbjct: 488 NELYK-PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPA 546
Query: 855 QQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDR 914
+ + +N +S + + L+ D+ SK LT G++
Sbjct: 547 KTMQGSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALS 606
Query: 915 KCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQ 974
EL+ + T+++E +K + + ++ E + K+ N E ++ K
Sbjct: 607 VTELDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKM-----KQSNNEANLREEVLKN 661
Query: 975 LEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKR 1018
L +E++ K G L E + + + DI+ R
Sbjct: 662 LATAYDNFVELVANLKEG-TKFYNELTEILVRFQNKCSDIVFAR 704
Score = 45.7 bits (107), Expect = 1e-04
Identities = 38/373 (10%), Positives = 106/373 (28%), Gaps = 19/373 (5%)
Query: 178 CHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNY 237
+++ + +K ++F+++ + + + D + + I +++
Sbjct: 342 TLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIAQMREATTLANGV 401
Query: 238 KKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKK 297
+ + + QS I + E +
Sbjct: 402 LASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPELLQRNREILDESL 461
Query: 298 TERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEE 357
D + + N+L + K+ + + +E L + + +
Sbjct: 462 RLLDEEEATDNDLRAKFKERWQ-------------RTPSNELYKPLRAEGTNFRTVLDKA 508
Query: 358 KQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGL 417
Q+ + E K L + + + + L
Sbjct: 509 VQADGQVKE---CYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNL 565
Query: 418 --IKMSQTTIDKYLSDIKILERTFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGNK 475
+K + ++ L + + + IN + EL+ +++ +
Sbjct: 566 DEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESL 625
Query: 476 KDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDP-DQLKNEIEAWIRQRNE 534
K ++ I +Q S ++ + N + L+ + D +L ++ + NE
Sbjct: 626 KKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVANLKEGTKFYNE 685
Query: 535 LEDELCVIDAEIS 547
L + L + S
Sbjct: 686 LTEILVRFQNKCS 698
Score = 43.0 bits (100), Expect = 7e-04
Identities = 47/387 (12%), Positives = 119/387 (30%), Gaps = 29/387 (7%)
Query: 712 ESDYSVPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIP 771
+ + K + + K T + + Q L + L + I
Sbjct: 330 PDLKDLDPIGKATLVKSTPVNVPISQKFTDLFEKMVPVSVQQSLAAYNQRKADLVNRSIA 389
Query: 772 SLRSKLIELEENVIETK--GELKKLKTALETPKTKEKTA-LSLQGDLTLLDQNIRELNTL 828
+R + ++ + K+ + QG + +DQ I+EL L
Sbjct: 390 QMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSVIEQGGIQTVDQLIKELPEL 449
Query: 829 QRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQ 888
+ LD+ L E++ N R+K + R S+ + +
Sbjct: 450 LQRNREI-------------LDESLRLLDEEEATDNDLRAKFKERWQRTPSN----ELYK 492
Query: 889 KQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQS 948
+ + + + + +++ + EL + + S
Sbjct: 493 PLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGS 552
Query: 949 ELDALKKEHKKKLNEEGAKIQDYTKQLEEVK-RIKLEILNYTKRGTLTQ-----LAALRE 1002
E+ + K L+E + + L+ V + + L + + + L
Sbjct: 553 EVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTELDR 612
Query: 1003 SVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEEL 1062
L + ++ + K+ + I +Q + + +L+ EL
Sbjct: 613 VYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVEL 672
Query: 1063 KLSEIMISDLTKYHHTLENCVIKYHSQ 1089
+ + + TK+++ L ++++ ++
Sbjct: 673 VAN---LKEGTKFYNELTEILVRFQNK 696
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 43.5 bits (103), Expect = 5e-04
Identities = 45/330 (13%), Positives = 105/330 (31%), Gaps = 73/330 (22%)
Query: 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGAS 60
M L L + +++ +V + T I+G NG GK+ +++ I F L G
Sbjct: 1 MGRLVGLELSNFKSY-RGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVL------GVR 53
Query: 61 S----GKNF---VHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTV 113
S ++ + ++ + +P+ + N V
Sbjct: 54 SNHLRSNILKDLIYRGVLNDENSDDYDNEGAASSNPQSAYVKAFYQK--------GNKLV 105
Query: 114 CVVRSLLLSNK-----NGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVS 168
++R + + +GK + +D +I + ++ + Q V ++
Sbjct: 106 ELMRIISRNGDTSYKIDGK-TVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAA----- 159
Query: 169 KAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIK 228
++ +F+E+ + +Y K E +K + ++L K E
Sbjct: 160 -------------------QSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESI 200
Query: 229 AHYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSV 288
N ++ + + + + + E E V
Sbjct: 201 ---------------------KNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEV 239
Query: 289 MSTQYQTKKTERDMIQESCNELESSIKQLF 318
++ + + K E I +++ K+LF
Sbjct: 240 INNETEQLKAEEKKILNQFLKIKKKRKELF 269
Score = 37.4 bits (87), Expect = 0.037
Identities = 30/210 (14%), Positives = 57/210 (27%), Gaps = 33/210 (15%)
Query: 833 ERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQT---------RLNSHNEK 883
+ G S+ V A ++ + R +G T ++
Sbjct: 75 NSDDYDNEGAASSNPQSAYVKAFYQKGNKLVELMRIISRNGDTSYKIDGKTVSYKDYSIF 134
Query: 884 LQS---LQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIE 940
L++ L K KN + Q V+ A R E Y+ E EEL K+ +
Sbjct: 135 LENENILIKAKNFL-VFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLS 193
Query: 941 TQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAAL 1000
+ + E K G ++ + +
Sbjct: 194 KSATESIKNRRRIHGE-LKTYKSPGLEVLFQGPRGSRYDEAE------------------ 234
Query: 1001 RESVQKLNQRKEDIIAKRGVCERTINEINQ 1030
+ +N E + A+ +I +
Sbjct: 235 -GRFEVINNETEQLKAEEKKILNQFLKIKK 263
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 41.9 bits (99), Expect = 0.001
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAID 1300
+A + R ++ D+P++ LD++ + KN +IV+ HD ++ LT D
Sbjct: 148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLT--D 205
Query: 1301 RAYVVR 1306
+++
Sbjct: 206 LIHIIY 211
Score = 39.6 bits (93), Expect = 0.008
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
+A T ++ ++ LD+P++ LD IK + ++ +I HD + +
Sbjct: 395 YIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIA- 453
Query: 1299 IDRAYVVR 1306
DR V +
Sbjct: 454 -DRIIVFK 460
Score = 36.2 bits (84), Expect = 0.083
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 32 IVGENGCGKTTIIECI 47
I+G NG GKTT +
Sbjct: 299 ILGPNGIGKTTFARIL 314
Score = 33.5 bits (77), Expect = 0.66
Identities = 7/17 (41%), Positives = 14/17 (82%)
Query: 31 LIVGENGCGKTTIIECI 47
++G+NG GKTT+++ +
Sbjct: 29 GVLGKNGVGKTTVLKIL 45
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 41.4 bits (98), Expect = 0.001
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 16/79 (20%)
Query: 1263 LDEPTTNLDIKN-----------ASDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDH 1311
LDEP LD + +I +TH E I + + +++D
Sbjct: 185 LDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN--FSK---ILLLKDG 239
Query: 1312 KGLSDIHLRSLLSSRLLSR 1330
+ + + +L+S +SR
Sbjct: 240 QSIQQGAVEDILTSENMSR 258
Score = 34.9 bits (81), Expect = 0.17
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 32 IVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDE 76
+ G NG GKTT++ + P +SG + GK
Sbjct: 52 LYGLNGAGKTTLLNIL----NAYEPA--TSGTVNLFGKMPGKVGY 90
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 41.4 bits (98), Expect = 0.002
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALT 52
L L + RN + F +T I GENG GKT ++E ALT
Sbjct: 6 LSALSTLNYRNL---APGTLNFPEGVTGIYGENGAGKTNLLEAAYLALT 51
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A
{Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 39.3 bits (92), Expect = 0.002
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIEN 1295
A++ + + LDEPT LD ++ + Q+I+++HDEE +
Sbjct: 73 AMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP-QVILVSHDEELKDA 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 40.7 bits (96), Expect = 0.003
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGK 63
L +L++ G ++F + ++ F +T IVG NG GK+ II+ IK+ G S K
Sbjct: 3 LKKLYLKGFKSF-GRPS-LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF------GEQSKK 54
Query: 64 N 64
Sbjct: 55 E 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis,
nucleotide-binding, phosphorylation, RNA- binding,
rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae}
PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 41.2 bits (96), Expect = 0.003
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKN----ASDQKNFQ--LIVITHDEEFIENLT 1297
LA + + LDEPT LD + + K F+ +I+ITH EF +NLT
Sbjct: 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLT 965
Score = 37.7 bits (87), Expect = 0.040
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNAS------DQKNFQLIVITHDEEFIENLT 1297
ALA RN I LDEPT +LD N + + I I+HD F++N+
Sbjct: 558 ALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVC 612
Score = 31.5 bits (71), Expect = 2.4
Identities = 51/342 (14%), Positives = 102/342 (29%), Gaps = 52/342 (15%)
Query: 925 YQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAK---IQDYTKQLEEVKRI 981
Y+ P L +++ A+ K + G I D Q RI
Sbjct: 643 YEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRI 702
Query: 982 KLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEID 1041
+ N + TL + + I I Q + I+
Sbjct: 703 AVIGPNGAGKSTLINVLTGELLPTSGEVYTHENC--------RIAYIKQ----HAFAHIE 750
Query: 1042 LKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREY 1101
+ T E + + E+ + + + + N + K R R
Sbjct: 751 SHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810
Query: 1102 WTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYIS 1161
+ Y+ + S ++ ++ + ++ L+ E +++ D+
Sbjct: 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNA--WIPRGELV-ESHSKMVAEVDMKEAL 867
Query: 1162 IAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRC-----SAGQR---VLACLIIR---LF 1210
+ + K G++ ++ + S GQ+ VLA + L
Sbjct: 868 ASGQFRPLTRKE----IEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLI 923
Query: 1211 ISDQ-----------------KNFQ--LIVITHDEEFIENLT 1233
+ D+ K F+ +I+ITH EF +NLT
Sbjct: 924 VLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLT 965
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome
partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 39.8 bits (92), Expect = 0.003
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALT 52
L ++ F R +T + G NG GK+T + AL
Sbjct: 7 FRSLTLINWNGFF---ARTFDLDELVTTLSGGNGAGKSTTMAAFVTALI 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster,
adenosine diphosphate, nucleotide-binding; HET: ADP;
2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 40.8 bits (96), Expect = 0.004
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI 1299
A+A R + DEP++ LDI+ + ++V+ HD ++ L+
Sbjct: 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLS-- 295
Query: 1300 DRAYVVR 1306
D +VV
Sbjct: 296 DVIHVVY 302
Score = 39.2 bits (92), Expect = 0.010
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENL 1296
A+A T R+ I+ LDEP+ LD I++ ++ +V+ HD I+ +
Sbjct: 481 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYV 538
Score = 35.7 bits (83), Expect = 0.12
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
IVG NG GKTT ++ +
Sbjct: 387 IVGPNGIGKTTFVKML 402
Score = 35.0 bits (81), Expect = 0.23
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 31 LIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
IVG NG GKTT ++ + L + S N + R
Sbjct: 121 GIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 37.9 bits (89), Expect = 0.004
Identities = 17/101 (16%), Positives = 46/101 (45%), Gaps = 7/101 (6%)
Query: 866 FRSKIESGQTRLNSHNEKLQSLQKQKND----IHSKQLTVQGGAGMLKSLEDRKCELEGM 921
+++K E Q H + L++ + + ++ I + + +L++ + E
Sbjct: 13 YQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR 72
Query: 922 DSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLN 962
+ L++ K+A +E L A+ ++ L +E+++ +N
Sbjct: 73 ---GELALKDARNKLAELEEALQKAKQDMARLLREYQELMN 110
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 40.4 bits (95), Expect = 0.004
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIK---NASD------QKNFQLIVITHDEEFIENLTAI 1299
A+A RN + DEP++ LDI+ NA+ ++ ++V+ HD ++ L
Sbjct: 168 AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYL--S 225
Query: 1300 DRAYVVR 1306
D +VV
Sbjct: 226 DIIHVVY 232
Score = 38.8 bits (91), Expect = 0.012
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 12/66 (18%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
A+A T R+ I+ LDEP+ LD I++ ++ +V+ HD I+ ++
Sbjct: 411 AIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVS- 469
Query: 1299 IDRAYV 1304
DR V
Sbjct: 470 -DRLMV 474
Score = 36.1 bits (84), Expect = 0.088
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
IVG NG GKTT ++ +
Sbjct: 317 IVGPNGIGKTTFVKML 332
Score = 33.4 bits (77), Expect = 0.69
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRI 71
+ IVG NG GK+T ++ + L S + R
Sbjct: 49 VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRG 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP;
NMR {Saccharomyces cerevisiae}
Length = 608
Score = 40.4 bits (95), Expect = 0.005
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI 1299
A+ + + ++ DEP++ LD+K + +I + HD ++ L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYL--S 288
Query: 1300 DRAYVVR 1306
D ++
Sbjct: 289 DFVCIIY 295
Score = 40.0 bits (94), Expect = 0.006
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 12/66 (18%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
A+ I+ +DEP+ LD I+ ++ HD L
Sbjct: 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLA- 535
Query: 1299 IDRAYV 1304
D+ V
Sbjct: 536 -DKVIV 540
Score = 36.2 bits (84), Expect = 0.096
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 32 IVGENGCGKTTIIECI 47
++GENG GKTT+I+ +
Sbjct: 383 MMGENGTGKTTLIKLL 398
Score = 34.6 bits (80), Expect = 0.25
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 30 TLIVGENGCGKTTIIECI 47
+VG NG GK+T ++ +
Sbjct: 106 LGLVGTNGIGKSTALKIL 123
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 40.0 bits (93), Expect = 0.005
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 12/114 (10%)
Query: 743 DQLCKQQRS----LQELKPVYENI---MKLQDTDIPSLRSKLIELEENVIETKGELKKLK 795
L KQ+++ L++LK + + +KL++ ++ + L +
Sbjct: 89 TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148
Query: 796 TALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDL 849
T +E K L + ++R L + L ++ K+ +T D
Sbjct: 149 TEMELHYNYIKDNLD-----NNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDY 197
Score = 31.1 bits (70), Expect = 2.9
Identities = 14/117 (11%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 324 ELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKK 383
ELQ+ L + + +L+++ +++ + ++N KL K ++ + +
Sbjct: 86 ELQTTLLKQEKTVKPVLRDLKDRV---AKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142
Query: 384 LNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFS 440
+ T++ + + + + +I I K + I
Sbjct: 143 ILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 40.3 bits (94), Expect = 0.006
Identities = 27/197 (13%), Positives = 65/197 (32%), Gaps = 7/197 (3%)
Query: 857 KEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSK-QLTVQGGAGMLKSLEDRK 915
EK+++L + + G +L +++ LQ + + + + LK + +
Sbjct: 1909 NEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQ 1968
Query: 916 CELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQL 975
E + +L + I Q A ++L+ + + E +
Sbjct: 1969 QAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLE-----NAA 2023
Query: 976 EEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSIANQ 1035
E+K + EI+ +A +E L + E I + + ++ + N
Sbjct: 2024 NELKLKQDEIVATITA-LEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082
Query: 1036 SLEEIDLKNNLTLLEKK 1052
+ E + +
Sbjct: 2083 NSERGRWEQQSENFNTQ 2099
Score = 35.6 bits (82), Expect = 0.15
Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 27/187 (14%)
Query: 773 LRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQREL 832
+ K +LEE + LKKL+ ++ LQ L
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEA------------------------QVKDLQVSL 1943
Query: 833 ERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKN 892
++ + + +Q L Q + + + Q +L+ N+++ + +
Sbjct: 1944 AQKNRE---LDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAY 2000
Query: 893 DIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDA 952
K ++ LE+ EL+ + L + +A + + E +
Sbjct: 2001 ADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQ 2060
Query: 953 LKKEHKK 959
+K E K
Sbjct: 2061 IKTESSK 2067
Score = 32.9 bits (75), Expect = 1.2
Identities = 46/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)
Query: 222 KEIPEIKAHYQATLNYKKEADSKKQLIYNNTQK-RDQSFEELHNIEESMKPINEKLVQLT 280
+ + Y A + +EA+ + RD L I +++ N +L L
Sbjct: 1827 RNLDLENPQYIAPPVFIQEAEIMGNNLMAIPPSHRDAVVSSLVYIHQTIGEANIRL--LK 1884
Query: 281 EKERNMSVMSTQYQTK-KTERDMIQESCNELESSIKQLFSG-DK--------AELQSKLN 330
+ R V Y +I E ++LE L G K +LQ L
Sbjct: 1885 RQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLA 1944
Query: 331 LFKINLDEKCSELEN--QERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTL 388
LD K + ++ ++ Q E KQ + Q+ + E + K D
Sbjct: 1945 QKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLE 2004
Query: 389 KTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQ- 447
K + + E ++ TI I + ++ +
Sbjct: 2005 KAEPTGPLREEVEQLENAAN---ELKLKQDEI-VATITALEKSIATYKEEYATLIRETEQ 2060
Query: 448 ----------------AEINALIVEKVELESKIKSFKQQIE 472
A ++ L E+ E + ++F Q+
Sbjct: 2061 IKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMS 2101
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 38.6 bits (89), Expect = 0.010
Identities = 16/129 (12%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 769 DIPSLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELNTL 828
D + ++ LEE + K ++ K + L+ K + ++ + REL +L
Sbjct: 40 DKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----SERELRSL 95
Query: 829 QRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQ 888
E + + + + +++ + + K K + + ++ + +++
Sbjct: 96 NIEEDIAKERSNQANR---EIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV 152
Query: 889 KQKNDIHSK 897
K +
Sbjct: 153 KNIKETQQI 161
Score = 34.3 bits (78), Expect = 0.22
Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 9/170 (5%)
Query: 485 INEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDA 544
N + + L +++ + I + K L D+ N+ EA + LE+E +
Sbjct: 3 SNTHLKQLIEISHLDKEIDSLEPLIREKRKDL--DKALNDKEAKNKAILNLEEEKLALKL 60
Query: 545 EISILQAQNITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKAL 604
++S + L + + + K+++I +E L + + N ++ +
Sbjct: 61 QVSKNEQT---LQDTNAKIASIQKKMSEIKSERELRS----LNIEEDIAKERSNQANREI 113
Query: 605 SSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRDQKRTLAELMDRME 654
++ +I R E +K + LE + ++ + + E +
Sbjct: 114 ENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163
Score = 29.3 bits (65), Expect = 9.2
Identities = 25/192 (13%), Positives = 63/192 (32%), Gaps = 1/192 (0%)
Query: 831 ELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQ 890
E+ + +I + + + L + K N +E + L K + +
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 891 KNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSEL 950
N + + L E + E+ I+ + + Q +L
Sbjct: 72 TNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK-RKSEKQEDL 130
Query: 951 DALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQR 1010
E +K E + +++ K ++E ++I + T ++ + E +++ +
Sbjct: 131 KKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWAKN 190
Query: 1011 KEDIIAKRGVCE 1022
+ K+ C
Sbjct: 191 TSIVTIKKQACG 202
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 39.1 bits (90), Expect = 0.011
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALT 52
L ++ F R F +T + G NG GK+T + AL
Sbjct: 9 FRSLTLINWNGFF---ARTFDFDELVTTLSGGNGAGKSTTMAGFVTALI 54
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 38.1 bits (88), Expect = 0.014
Identities = 35/263 (13%), Positives = 94/263 (35%), Gaps = 2/263 (0%)
Query: 721 VNKLKTKIKEIPEQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIEL 780
++ + K +++ + + L K+ ++ ++ Y +K + K +
Sbjct: 22 ADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDA 81
Query: 781 EENVIETKGELKKLKTALETPKTKEKTALSLQGDLT-LLDQNIRELNTLQRELERQESKI 839
E +V ++ + L+ + + TAL + D++ R + ++ ++ E K+
Sbjct: 82 EADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKM 141
Query: 840 SGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQS-LQKQKNDIHSKQ 898
+ + K E+ IES R E + + + +I +
Sbjct: 142 EIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVT 201
Query: 899 LTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHK 958
++ + ++ + E V +L+E + E + + +D L+ E
Sbjct: 202 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 261
Query: 959 KKLNEEGAKIQDYTKQLEEVKRI 981
+ + A ++ L ++ I
Sbjct: 262 AQKLKYKAISEELDHALNDMTSI 284
Score = 37.7 bits (87), Expect = 0.021
Identities = 37/275 (13%), Positives = 103/275 (37%), Gaps = 9/275 (3%)
Query: 779 ELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIREL-NTLQRELERQES 837
+++ ++ + L + A K E + L+ +L L + ++ + L + E +
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
Query: 838 KISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSK 897
+ A + F +++ Q RL + +KL+ +K ++
Sbjct: 67 AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126
Query: 898 QLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEH 957
++ + E++ E + E+ RK + +L + +S+L +
Sbjct: 127 MKVIES---RAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDL----ERA 179
Query: 958 KKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAK 1017
+++ K + ++++ V L+ L + E ++ L+ + ++ +
Sbjct: 180 EERAELSEGKCAELEEEIKTVTN-NLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETR 238
Query: 1018 RGVCERTINEINQSIANQSLEEIDLKNNLTLLEKK 1052
ER++ ++ +SI + E K + ++
Sbjct: 239 AEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
Score = 35.4 bits (81), Expect = 0.11
Identities = 32/287 (11%), Positives = 93/287 (32%), Gaps = 5/287 (1%)
Query: 265 IEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKAE 324
++ K + + + + +++ L+ +K + +
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKAT-EDELDK 59
Query: 325 LQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKL 384
L + L+ + + E + + + ++ AQ +L + E +K
Sbjct: 60 YSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKA 119
Query: 385 NDTLKTKLNNLADTLCLDTTAKSQYTPE--EGEGLIKMSQTTIDKYLSDIKILERTFSDN 442
D + + + D + E + + + + ++ + I+E
Sbjct: 120 ADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERA 179
Query: 443 ENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKL 502
E + + E+++ + K +K E+ L+ +T+
Sbjct: 180 EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRA 239
Query: 503 NRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISIL 549
+ +L KS+D L++E+ A + + +EL +++ +
Sbjct: 240 EFAERSVTKLEKSID--DLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 33.9 bits (77), Expect = 0.37
Identities = 38/235 (16%), Positives = 84/235 (35%), Gaps = 7/235 (2%)
Query: 848 DLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGM 907
D+ A +K ++ ++ S Q +L + ++L + D K +
Sbjct: 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEK---K 77
Query: 908 LKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAK 967
E L +++ EL+ ++A +L A+ D ++ K +
Sbjct: 78 ATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKD 137
Query: 968 IQDYTKQLEEVKRIKLEI--LNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTI 1025
+ Q ++K K + +L + +++ +R E K E I
Sbjct: 138 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEI 197
Query: 1026 NEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLE 1080
+ ++ +SLE K + + +E + L+++LK +E + LE
Sbjct: 198 KTVTNNL--KSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLE 250
Score = 31.2 bits (70), Expect = 2.8
Identities = 45/288 (15%), Positives = 111/288 (38%), Gaps = 16/288 (5%)
Query: 208 KALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEE 267
K ++ +K+ ++ E +A +A + + + + + +K + +EL E
Sbjct: 6 KKMQMLKLDKENALDRADEAEADKKA---AEDRSKQLEDELVSLQKKLKATEDELDKYSE 62
Query: 268 SMKPINEKL----VQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKA 323
++K EKL + T+ E +++ ++ + Q + E D QE +++
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEA-EKAAD 121
Query: 324 ELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKK 383
E + + + + + ++E QE + + + E KL +E D E ++
Sbjct: 122 ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEE 181
Query: 384 LNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNE 443
+ + K L + + + E + DKY +IK+L + E
Sbjct: 182 RAELSEGKCAELEEEI-----KTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAE 236
Query: 444 N---TKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEV 488
+ + L +LE ++ + K + + ++L + + + +
Sbjct: 237 TRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Score = 29.2 bits (65), Expect = 9.5
Identities = 32/266 (12%), Positives = 89/266 (33%), Gaps = 8/266 (3%)
Query: 321 DKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEET 380
E ++ + + EL + ++ E + + +AQ KL E+
Sbjct: 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATD 80
Query: 381 HKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFS 440
+ +L ++ + L ++Q ++ ++ D+ +K++E
Sbjct: 81 AEADVASLNRRIQLFEEEL-----DRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 441 DNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQT 500
+E + + L K E + +++ +++ S+ L+
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 501 KLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITL-AEI 559
++ V + + L ++ + + + + L D+L + + L I
Sbjct: 196 EIKTVTNNLKSLEAQA--EKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253
Query: 560 KSLKNRKESKLADINLLKERHDRAFH 585
L++ ++ + E D A +
Sbjct: 254 DDLEDELYAQKLKYKAISEELDHALN 279
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 38.7 bits (90), Expect = 0.020
Identities = 90/503 (17%), Positives = 150/503 (29%), Gaps = 172/503 (34%)
Query: 843 RSTGVDLDQVL--AQQKEKKNELNTFRSKIESGQTRLNSHN-EKL---QSLQKQKNDIHS 896
G DLD ++ A E+ EL SK E R+ N ++ QK I +
Sbjct: 560 GGLGWDLDAIIPFAAIPEQGIELEHIDSKSEF-AHRIMLTNILRMMGCVKKQKSARGIET 618
Query: 897 KQLTVQ----------GGAGM-------LKSL------ED---------------RKCEL 918
+ V GG GM L++L E R L
Sbjct: 619 RPAQVILPMSPNHGTFGGDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGL 678
Query: 919 EGMDSVYQTELEELG-RKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEE 977
+++ +E++G R + E NL L +L ++ + D L+
Sbjct: 679 MSANNIIAEGIEKMGVRTFSQKEMAFNLL-----GLLTPEVVELCQKSPVMADLNGGLQF 733
Query: 978 VKRIKLEILNYTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEIN-QSIANQS 1036
V +K E R L + + +R++V + ++ + ++ Q AN
Sbjct: 734 VPELK-EFTA-KLRKELVETSEVRKAVSIETALEHKVVNGNSA-DAAYAQVEIQPRANIQ 790
Query: 1037 LEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVI-------KYHSQ 1089
L+ +LK K+ EL E ++ DL + V+ + S
Sbjct: 791 LDFPELKPY------KQVKQIAPAEL---EGLL-DLERV------IVVTGFAEVGPWGSA 834
Query: 1090 KMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCV--------IKYHSQKMRSIN 1141
+ R W + S LE CV I YH+ ++
Sbjct: 835 RTR---------WEMEAFGEFS-------------LEGCVEMAWIMGFISYHNGNLKG-- 870
Query: 1142 RLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRV 1201
R Y G D T V ++D++ + +
Sbjct: 871 --------RPYTG--------WVDSKTK---------EPVD-----DKDVKAKY--ETSI 898
Query: 1202 LA-CLIIRLFISD---------QKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALA 1251
L I RL + ++ Q +++ D E E K A
Sbjct: 899 LEHSGI-RLIEPELFNGYNPEKKEMIQEVIVEEDLEPFE---------------ASKETA 942
Query: 1252 ETFSRNCG----IFALDEPTTNL 1270
E F G IF + E
Sbjct: 943 EQFKHQHGDKVDIFEIPETGEYS 965
Score = 32.2 bits (73), Expect = 1.7
Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 36/84 (42%)
Query: 1406 MNTNRLRWLGHLMRIDKNRAVWKIFTNTPHQGKR-----LPGRPRSCWIN---------- 1450
M TN LR +G + + R + R LP P N
Sbjct: 596 MLTNILRMMGCVKKQKSARGI----------ETRPAQVILPMSP-----NHGTFGGDGMY 640
Query: 1451 -EMKR----LCNRWGLNDW-EELT 1468
E K L NRW W +LT
Sbjct: 641 SESKLSLETLFNRWHSESWANQLT 664
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.039
Identities = 6/20 (30%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 304 QESCNELESSIKQLFSGDKA 323
+++ +L++S+K L++ D A
Sbjct: 19 KQALKKLQASLK-LYADDSA 37
Score = 35.7 bits (81), Expect = 0.044
Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 788 KGELKKLKTALE--TPKTKEKTALSLQGDL 815
K LKKL+ +L+ + AL+++ +
Sbjct: 19 KQALKKLQASLKLYADDS--APALAIKATM 46
Score = 34.5 bits (78), Expect = 0.10
Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 42/71 (59%)
Query: 357 EKQSHTHINEAQMKLGKLERDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEG 416
EKQ+ + KKL +LK Y +
Sbjct: 18 EKQA---L-----------------KKLQASLKL------------------YADDSAPA 39
Query: 417 L-IKMSQTTID 426
L IK T++
Sbjct: 40 LAIK---ATME 47
Score = 31.5 bits (70), Expect = 1.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 753 QELKPVYENIMKLQDTD-IPSLRSKL-IE 779
Q LK + + +KL D P+L K +E
Sbjct: 20 QALKKL-QASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.8
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 1051 KKEAVAKLNEELKL 1064
+K+A+ KL LKL
Sbjct: 18 EKQALKKLQASLKL 31
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 36.9 bits (84), Expect = 0.061
Identities = 28/173 (16%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 213 IKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSFEE-LHNIEESMKP 271
+ ++ I Y+ + ++ K + ++ + L + E
Sbjct: 415 FSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDA 474
Query: 272 INEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNL 331
I + LTEKE+ + V + ++ + M+ E + E ++Q + Q L
Sbjct: 475 ILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQK----ERSYQEHLKQ 530
Query: 332 FKINL-DEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKK 383
+ +++ L+ QER + +QE++Q + + ++ K E + K
Sbjct: 531 LTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 36.0 bits (84), Expect = 0.062
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 1263 LDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTAIDRAYVV---RIVR 1309
LDEPT LD + + +I+ THD + + D +V+ R++
Sbjct: 167 LDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYC--DNVFVMKEGRVIL 224
Query: 1310 D 1310
Sbjct: 225 Q 225
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 36.4 bits (84), Expect = 0.066
Identities = 15/124 (12%), Positives = 39/124 (31%), Gaps = 5/124 (4%)
Query: 742 IDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEENVIETKGELKKLKTALETP 801
C + + Y+ + + + ++ V + ++ E+
Sbjct: 15 FGSYCPTTCGIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESS 74
Query: 802 KTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKN 861
K A +L + + E+ + + +S I ++ +Q + KEK
Sbjct: 75 KPNMIDAATL-----KSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 129
Query: 862 ELNT 865
+L
Sbjct: 130 QLEA 133
Score = 29.5 bits (66), Expect = 9.5
Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 35/171 (20%)
Query: 336 LDEKCSELEN-----QERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTLKT 390
LDE+ + L + + +K + + L ++E K+L ++
Sbjct: 11 LDERFGSYCPTTCGIADFLSTYQTKVDKD----LQSLEDILHQVENKTSEVKQLIKAIQL 66
Query: 391 KLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFSDNENTKQAEI 450
N + +I + K L +I E + ++++ +
Sbjct: 67 TYNPDESSK---------------PNMIDAATLKSRKMLEEIMKYEASILTHDSSIR--- 108
Query: 451 NALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTK 501
L+ S Q+I K+ + + Q E + + + K
Sbjct: 109 --------YLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHDITGK 151
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding domain;
2.40A {Haemophilus influenzae}
Length = 253
Score = 36.0 bits (84), Expect = 0.073
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 14/51 (27%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNA----------SDQKNFQLIVITHD 1289
A+A C + LDEPT+ LD+ N + +N ++ TH
Sbjct: 142 AIAS----ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Score = 34.9 bits (81), Expect = 0.16
Identities = 7/19 (36%), Positives = 16/19 (84%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+ ++G+NGCGK+T+++ +
Sbjct: 33 ILAVLGQNGCGKSTLLDLL 51
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 34.0 bits (79), Expect = 0.090
Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 866 FRSKIESGQTRLNSHNEKLQSLQKQKND----IHSKQLTVQGGAGMLKSLEDRKCELEGM 921
F +K E + +++E +QS + + ++ + + ++ +Q M SLE+ E +G
Sbjct: 15 FFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGR 74
Query: 922 DSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLN 962
Y +L ++ + +E QL + E++ +E+K L+
Sbjct: 75 ---YCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD 112
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 35.7 bits (83), Expect = 0.12
Identities = 11/107 (10%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 848 DLDQVLAQQKEKKNELNTFR-SKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAG 906
+ +K EL + I S L E+++SL+++K + ++ +
Sbjct: 49 YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAV-TEAV-----RA 102
Query: 907 MLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDAL 953
++ + ++ + + + + E+ +++ + + + +
Sbjct: 103 LVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
Score = 32.6 bits (75), Expect = 1.2
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 472 EGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKN--EIEAWI 529
E KDL +I+ E+ Q + ++ L+ + V + L + D Q++ + ++
Sbjct: 63 ELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLR 122
Query: 530 RQRNELEDELCVIDAEISILQAQ 552
+ E+ +L ++ + + L+ Q
Sbjct: 123 ARGREIRKQLTLLYPKEAQLEEQ 145
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 34.6 bits (80), Expect = 0.20
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASDQKNFQ------LIVITHDEEFIENLTAIDRA 1302
+ + I LDEP N+D + I++TH+ + +
Sbjct: 138 RTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELD--MLNLYKEYK 195
Query: 1303 YVVR 1306
Sbjct: 196 AYFL 199
Score = 31.5 bits (72), Expect = 1.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+I+G NG GKTT++ I
Sbjct: 32 KVIILGPNGSGKTTLLRAI 50
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Length = 224
Score = 34.4 bits (80), Expect = 0.20
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 1260 IFALDEPTTNLDIKNASD---------QKNFQLIVITHDEE 1291
+FA DEPT NLD N + ++++TH+ E
Sbjct: 162 LFA-DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE 201
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 35.0 bits (81), Expect = 0.21
Identities = 13/139 (9%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 848 DLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGM 907
+ D+ + E+ + + ++ G + + + ++ + + A +
Sbjct: 7 EFDEKYLELSEELKQSEKHKGTLDQGA-------SQFLNAIEFVLRVYRQTEVIYVYAHL 59
Query: 908 LKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAK 967
+D ++ YQ + + ++ + E+ L + + +E K
Sbjct: 60 KND-QDTG------NTDYQALYARASSLFSKVSEAVSWFEPEILQLSDDQIWQYFKEEPK 112
Query: 968 IQDYTKQLEEVKRIKLEIL 986
++ Y ++++ + +L
Sbjct: 113 LEVYRHYIQQIVDNRAHVL 131
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.23
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 949 ELDALKKEHKKKLNEEGAK-IQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESVQK- 1006
ELDA K +++ E+ K ++++ ++ E ++E R + +
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSE----QVE----------KNKINNRIADKAF 145
Query: 1007 LNQRKEDII 1015
Q DII
Sbjct: 146 YQQPDADII 154
Score = 31.7 bits (71), Expect = 1.1
Identities = 9/65 (13%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 1002 ESVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEE 1061
ES++K + + + + + + + + A + LEE + + + +EK + ++ ++
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQS-EQVEKNKINNRIADK 143
Query: 1062 LKLSE 1066
+
Sbjct: 144 AFYQQ 148
Score = 30.1 bits (67), Expect = 4.2
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 31/95 (32%)
Query: 211 ESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMK 270
ESI+ R+ RK + E +A SK + R+++ ++L EE +
Sbjct: 85 ESIRKWREEQRKRLQE------------LDAASKVME----QEWREKAKKDL---EEWNQ 125
Query: 271 PINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQE 305
+E++ EK + + ++ Q+
Sbjct: 126 RQSEQV----EK--------NKINNRIADKAFYQQ 148
Score = 29.4 bits (65), Expect = 6.4
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 344 ENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEETHKKLNDTL-KTKLNNLA 396
E ++RL+ + +A+ L EE +++ ++ + K K+NN
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDL------EEWNQRQSEQVEKNKINNRI 140
Score = 29.0 bits (64), Expect = 9.8
Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 25/63 (39%)
Query: 519 DQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLADINLLKE 578
++ K ++E W ++++E Q + KN+ +++AD ++
Sbjct: 114 EKAKKDLEEWNQRQSE---------------QVE----------KNKINNRIADKAFYQQ 148
Query: 579 RHD 581
Sbjct: 149 PDA 151
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 34.7 bits (79), Expect = 0.24
Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 4/193 (2%)
Query: 457 KVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSL 516
+ L++ K K + + + N ++ + K+ D++ +L
Sbjct: 24 QFNLKAYFK-TSADPTPAKDAIAALFEEANSTLLTRGAPEGQGAKVTEWKLGEDRIELTL 82
Query: 517 DPDQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLADINLL 576
+ +A R R +L + L + ++ + + K+ I +
Sbjct: 83 QSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIKSM 142
Query: 577 KERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSS 636
+ + L ++ E D+ L+ + I Q AK +H L
Sbjct: 143 ENI-EGGIQLELEVGEAEMKNRVPDRILTLLEEKIEAAQYG--AKAEHWNLLWQREPMEH 199
Query: 637 KTLRDQKRTLAEL 649
D + + +
Sbjct: 200 PFKEDPTQAMMKE 212
Score = 32.0 bits (72), Expect = 1.7
Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 945 LAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILNYTKRGTLTQLAALRESV 1004
++ L + + +GAK+ ++ RI+L + + + LR+ +
Sbjct: 48 FEEANSTLLTRGAPE---GQGAKVTEWK---LGEDRIELTLQSGRYVRVHDAIFRLRKQL 101
Query: 1005 QKLNQRKEDIIAKRGVCERTINEI--NQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEEL 1062
+ +K I + E I ++ + + + I +E E +L E+
Sbjct: 102 AEALGKKYKIGIRGIEVESFIIKVPADHELRMLKVPYIK------SMENIEGGIQLELEV 155
Query: 1063 KLSEI 1067
+E+
Sbjct: 156 GEAEM 160
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Length = 157
Score = 33.1 bits (75), Expect = 0.34
Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 929 LEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKRIKLEILN- 987
L+ + L L E AL++ L + Q +QLE R + EIL
Sbjct: 9 LDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRARAEILRE 68
Query: 988 ---YTKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSIANQSLEEID 1041
R L + A R +L R +++ C + N N I +
Sbjct: 69 AGVSLDREGLARYARERADGAELLARGDELGELLERC-QQANLRNGRIIRANQASTG 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.0 bits (77), Expect = 0.36
Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 8/141 (5%)
Query: 234 TLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNM-SVMSTQ 292
T E + +L + D + E NE L +L +KE M + +
Sbjct: 290 THTRHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQR 349
Query: 293 YQTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQ 352
+ K+ E ++ +E +K+L +K +L+ K E+ ++ K+
Sbjct: 350 VKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLD-------DEVNAFKQRKTA 402
Query: 353 YIQEEKQSHTHINEAQMKLGK 373
+ Q +K K
Sbjct: 403 AELLQSQGSQAGGSQTLKRDK 423
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular
mimicry, translation; 1.81A {Escherichia coli} SCOP:
e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Length = 365
Score = 33.8 bits (78), Expect = 0.40
Identities = 21/130 (16%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 495 LQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCVIDAEI--SILQAQ 552
+ + ++ + D L LD D K +E E+ EL ++ +AQ
Sbjct: 4 INPVNNRIQDLTERSDVLRGYLDYDAKKERLE-------EVNAEL--EQPDVWNEPERAQ 54
Query: 553 NITLAEIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDIN 612
+ E SL+ + ++ +K+ + L ++ E + + + ++A++ +++
Sbjct: 55 AL-GKERSSLEA----VVDTLDQMKQGLEDV-SGLLELAVEADDEETFNEAVA----ELD 104
Query: 613 RIQEDINAKE 622
++E + E
Sbjct: 105 ALEEKLAQLE 114
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella
thermoacetica} PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A*
3rbo_A* 3sin_A* 1eg7_A
Length = 557
Score = 34.1 bits (79), Expect = 0.44
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 1392 DIHALSKQPNIVATMNTNRLRWLGHLMRIDKNRAVWK 1428
DIHA++ N++A M N L+ G+++ ID W+
Sbjct: 132 DIHAVTYAHNLLAAMVDNHLQQ-GNVLNIDPRTITWR 167
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative
formyltetrahydrofolate synthetase, structural genomics;
HET: MSE; 1.85A {Thermotoga maritima}
Length = 543
Score = 33.7 bits (78), Expect = 0.50
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 1392 DIHALSKQPNIVATMNTNRLRWLGHLMRIDKNRAVWK 1428
D+HA++ N++A + + ++ G+ ++ID R WK
Sbjct: 118 DMHAVASAHNLLAAVLDSHIKH-GNELKIDITRVFWK 153
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 33.6 bits (78), Expect = 0.56
Identities = 13/90 (14%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 467 FKQQIEGNKKDLTNVITQINEVNQSQSTLQV----LQTKLNRVNSEIDQLSKSLDPDQLK 522
K+++ K+L +++ ++ E+++ + + L+++ N+++ EI +L +
Sbjct: 14 VKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKRE------G 67
Query: 523 NEIEAWIRQRNELEDELCVIDAEISILQAQ 552
+ + EL++E+ ++ E+ ++ +
Sbjct: 68 KDTTEIQNRVKELKEEIDRLEEELRKVEEE 97
Score = 30.9 bits (71), Expect = 3.0
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 16/107 (14%)
Query: 848 DLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGM 907
D V + + EL + K+ R ++L++L+ ++N + SK++ G
Sbjct: 10 KPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKL-SKEI------GK 62
Query: 908 LKSLEDRKCELEGMD-SVYQTELEELGRKVAPIETQLNLAQSELDAL 953
LK EG D + Q ++EL ++ +E +L + EL
Sbjct: 63 LKR--------EGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B
2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B
3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Length = 328
Score = 33.3 bits (76), Expect = 0.59
Identities = 9/62 (14%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 459 ELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDP 518
+ E+ + + ++E ++ + + + L+VL++ L + S+I +L +
Sbjct: 1 DNENVVNEYSSELEKHQLYIDETVNS-----NIPTNLRVLRSILENLRSKIQKLESDVSA 55
Query: 519 DQ 520
Sbjct: 56 QM 57
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport,
TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 32.9 bits (76), Expect = 0.68
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 14/60 (23%)
Query: 1263 LDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAIDRAYVV---RIVRD 1310
LDEP LD + +D +I+I+HD E + N DR V+ + V D
Sbjct: 162 LDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV--DRVVVLEKGKKVFD 219
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 33.0 bits (75), Expect = 0.70
Identities = 29/257 (11%), Positives = 83/257 (32%), Gaps = 14/257 (5%)
Query: 733 EQTNNKKTHIDQLCKQQRSLQELKPVYENIMKLQDTDIPSLRSKLIELEE---NVIETKG 789
+ N + +D + L + + + L+EL + ++
Sbjct: 54 DTGNIGQERVDTVNHLADELINSGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASY 113
Query: 790 ELKKLKTALETPKT--KEKTAL---SLQGDLTLLDQNIRELNTLQRELERQESKISGMRS 844
EL K + ++K L D ++ R T + +++ +++ ++
Sbjct: 114 ELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQE 173
Query: 845 TGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGG 904
L Q ++ + + + S + +S + + D K
Sbjct: 174 DAARL-----QAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTGDKFRFFSMV 228
Query: 905 AGMLKSLEDRKCELEGMDSVY-QTELEELGRKVAPIETQLNLAQSELDALKKEHKKKLNE 963
++ +ED ++E + + +E L I+ +++ + K L
Sbjct: 229 RDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLAR 288
Query: 964 EGAKIQDYTKQLEEVKR 980
+ ++ ++L ++
Sbjct: 289 KHYASEEIKEKLLQLTE 305
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 32.0 bits (72), Expect = 0.88
Identities = 25/154 (16%), Positives = 61/154 (39%), Gaps = 6/154 (3%)
Query: 824 ELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEK 883
+L+ LQ++LE + T V L + + + ++L + +++ L + +
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQ 66
Query: 884 LQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQL 943
D + Q ++ + +L+ + Q E++ L + +E +
Sbjct: 67 TD------KDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGER 120
Query: 944 NLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEE 977
AQ L+ +KE + K++ ++LE+
Sbjct: 121 KEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 32.7 bits (75), Expect = 1.0
Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 44/213 (20%)
Query: 752 LQELKPVYENIMKLQDTDIP---SLRSKLIELEENVIETKGELKKLKTAL--------ET 800
L+ L V E + K Q+ S++ L ++E VIE + +K +K
Sbjct: 27 LEALLAVDEQLHKQQEVIADKQMSVKEDLDKVEPAVIEAQNAVKSIKKQHLVEVRSMANP 86
Query: 801 PKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKK 860
P + S+ L + +++ + + R+ + + + ++ + ++ +K
Sbjct: 87 PAAVKLALESIALLLGESTTDWKQIRS---IIMRENFIPTIVNFSAEEISDAIREKMKKN 143
Query: 861 NELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEG 920
+ S +N + + K + + L+
Sbjct: 144 -----YMSNPSYNYEIVNRASLAAGPMVKWA-----------------IAQLNYADMLK- 180
Query: 921 MDSVYQTELEELGRKVAPIETQLNLAQSELDAL 953
+E L ++ +E Q +L+AL
Sbjct: 181 -------RVEPLRNELQKLEDDAKDNQQKLEAL 206
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 32.4 bits (73), Expect = 1.3
Identities = 45/450 (10%), Positives = 144/450 (32%), Gaps = 41/450 (9%)
Query: 459 ELESKIKSFKQQI--EGNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSL 516
E ++ + ++ DL +V IN +++ + +L+++ +++ + S
Sbjct: 13 ECLGWMRQQRAEMDMVAWGVDLASVEQHINSHRGIHNSIGDYRWQLDKIKADLREKSAIY 72
Query: 517 DPDQLKNEIEAWIRQR-----------NELEDELCVIDAEISILQAQNIT--LAEIKSLK 563
++ + +R E+ I+ + + I +
Sbjct: 73 QLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWINDCEEEELLYDWSDKNTNIAQKQ 132
Query: 564 NRKESKLADINLLKERHDRAFHLLFDMIPEENF-KNSLDKALSSITFDINRIQEDINAKE 622
+++ + + ++ ++ ++ ++ + ++ + ++ + I + +
Sbjct: 133 EAFSIRMSQLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCID 192
Query: 623 KHLYTLEANVSNSSKTLRDQKRTLAELMDRMELVLGSKPFEDELDRVTLELKREQEEVSM 682
HL + + + + T A L + + P + + L + ++ E
Sbjct: 193 VHL----KENAAYFQFFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLEQIKELEKER 248
Query: 683 MTSTQYLFNSYIGKLEENEPRC-PLCTRFFESDYSVPGLVNKL------KTKIKEIPEQT 735
+Y + L + L R + + P ++ L + + + E
Sbjct: 249 EKILEY--KRQVQNLVNKSKKIVQLKPRNPDYRSNKPIILRALCDYKQDQKIVHKGDECI 306
Query: 736 NNKKTHIDQLCKQQRSLQELK-PVYENIMKLQDTDIPSLRSKLIELEENVIETKGELKKL 794
+ ++ P I+ + L K+ + + +
Sbjct: 307 LKDNNERSKWYVTGPGGVDMLVPSVGLIIPPPNPLAVDLSCKI----------EQYYEAI 356
Query: 795 KTALETPKTKEKTALSLQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLA 854
K+ +S + +++ IR + + + RQE + + + + +
Sbjct: 357 LALWNQLYINMKSLVSWHYCMIDIEK-IRAMTIAKLKTMRQEDYMKTIADLELHYQEFIR 415
Query: 855 QQKEKKNELNTFRSKIESGQTRLNSHNEKL 884
+ + + + KI+S T H + L
Sbjct: 416 NSQGSEMFGDDDKRKIQSQFTDAQKHYQTL 445
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 31.4 bits (72), Expect = 1.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 9 IMGIRNFPADKNRVVRFQ--RPLTL-IVGENGCGKTTIIECIKFALTNEYPQGA 59
++ A+KNR + + + I+G G GKT +IE + NE GA
Sbjct: 10 LLAENKRLAEKNRE-ALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGA 62
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding
domain, ABC transporter ATPase; HET: ADP; 1.80A
{Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 31.4 bits (72), Expect = 1.8
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 11/42 (26%)
Query: 1260 IFALDEPTTNLDIKNASD----------QKNFQLIVITHDEE 1291
I A D+PT LD K + ++V+THD
Sbjct: 167 ILA-DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 31.3 bits (72), Expect = 2.3
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 473 GNKKDLTNVITQINEVNQSQSTLQVLQTKLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQR 532
G DL ++ EV + + LQ +QT+ N+V + + + + L +A +
Sbjct: 22 GVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPE-EKEALIARGKALGEEA 80
Query: 533 NELEDELCVIDAEISILQAQ--NI 554
LE+ L +A + L Q
Sbjct: 81 KRLEEALREKEARLEALLLQVPLP 104
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P
structure initiative; 2.25A {Salmonella typhimurium}
SCOP: c.23.16.9
Length = 256
Score = 31.0 bits (69), Expect = 2.3
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 1458 RWGLNDWEELTQHRVLWRQAV-WFSR 1482
WG + + LW + + +R
Sbjct: 230 HWGTQQFMSWPFYTDLWVNTLQFIAR 255
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 29.9 bits (67), Expect = 2.4
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 857 KEKKNELNTFRSKIESGQTRLNSHNEKLQSLQKQKNDIH----SKQLTVQGGAGMLKSLE 912
K E + +E + R EK+ SL ++KND+ ++Q + L
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 913 DRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDALKKE 956
K +LE LE+ A + + + E LK++
Sbjct: 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 31.4 bits (72), Expect = 2.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 32 IVGENGCGKTTII 44
+VG G GKTTI+
Sbjct: 386 LVGPTGSGKTTIV 398
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A
{Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 31.0 bits (71), Expect = 2.5
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 15/55 (27%)
Query: 1263 LDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI--DRAYVVR 1306
LDEP +LD+ S Q+ +++ +HD N T RA++++
Sbjct: 157 LDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD----LNHTLRHAHRAWLLK 207
Score = 31.0 bits (71), Expect = 2.5
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+ +VG NG GK+T++ +
Sbjct: 28 ILHLVGPNGAGKSTLLARM 46
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural
genomics, structural genomics consortium, SGC,
activator, ATP-binding, DNA-binding; HET: ADP; 2.80A
{Homo sapiens}
Length = 235
Score = 31.1 bits (71), Expect = 2.5
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 18 DKNRVVRFQRPLTLIVGENGCGKTT 42
+N VV +I G GCGKTT
Sbjct: 74 SQNSVV-------IIRGATGCGKTT 91
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 31.4 bits (70), Expect = 3.0
Identities = 22/175 (12%), Positives = 63/175 (36%), Gaps = 15/175 (8%)
Query: 814 DLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESG 873
DL ++ I+++ + EL + + ++ + D +A + ++ + +E
Sbjct: 11 DLLNINDRIKQVQNERNELASK---LQNLKQSLASNDTEVALSEVIAQDIIEVGASVEGL 67
Query: 874 QTRLNSHN--EKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEE 931
+ + + L L+K Q V + L+ + + D +++
Sbjct: 68 EQLRAKYGDLQILNKLEKVAVQQTQMQAGVDKLDSFERQLD--ELAEQPPDQFTLDDVKA 125
Query: 932 LGRKV------APIETQLNLAQSELDALKKEHKKKLNEEGAK--IQDYTKQLEEV 978
L K+ P ++ + + LK + K N+ + +++ ++
Sbjct: 126 LHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQRLATNWSNTFDQK 180
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 30.9 bits (70), Expect = 3.0
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 989 TKRGTLTQLAALRESVQKLNQRKEDIIAKRGVCERTINEINQSIAN---QSLEEIDLKNN 1045
+ T L LR V +LN ++I+KR + I +I + + L E ++ N
Sbjct: 22 SNAMVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSLRFDPLREREMLNT 81
Query: 1046 LTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVIKYHSQKMRSI 1094
+ + ++L + + ++ ++K +I
Sbjct: 82 ILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKKEDTI 130
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.9 bits (69), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 18 DKNRVVRFQRPLTLIVGENGCGKTTI 43
+K R+ F+ P +IVG + GKT++
Sbjct: 129 EKIRMSNFEGPRVVIVGGSQTGKTSL 154
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 31.2 bits (71), Expect = 3.2
Identities = 7/13 (53%), Positives = 12/13 (92%)
Query: 32 IVGENGCGKTTII 44
+VG +GCGK+T++
Sbjct: 1064 LVGSSGCGKSTVV 1076
Score = 30.4 bits (69), Expect = 6.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 32 IVGENGCGKTTII 44
+VG +GCGK+T +
Sbjct: 421 LVGNSGCGKSTTV 433
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 3.5
Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 22/153 (14%)
Query: 230 HYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVM 289
HY+ NY+ + + K + + + + E + ++ + E M
Sbjct: 286 HYE---NYRSRKLAAVTYNGVDNNKNKGQLTK-SPLAQMEEERREHVAKMKKMEMEM--- 338
Query: 290 STQYQTKKTERDMIQESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERL 349
+ + E +K +AELQ + K NL+ + ELE + R
Sbjct: 339 ----------EQVFEMKVKEKVQKLKDS----EAELQRRHEQMKKNLEAQHKELEEKRRQ 384
Query: 350 KSQYIQEEKQSHTHINEAQMKLGKLERDEETHK 382
+ I E Q LE++++ K
Sbjct: 385 FEDEKANWEA-QQRILEQQNSSRTLEKNKKKGK 416
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.3 bits (69), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 17 ADKNRVVRFQR--PLTL-IVGENGCGKTTIIECIKFALTNEYPQGA 59
ADKNR + + +G G GKT +IE + L ++Y
Sbjct: 26 ADKNRK-LLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIAC 70
>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia P CO92,
YPO2528, csgid, isomerase, structural genomics; 2.28A
{Yersinia pestis}
Length = 458
Score = 30.4 bits (69), Expect = 4.5
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 894 IHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQLNLAQSELDA 952
+ +Q+ + GAG++ S + E +E+ K A +++ L + A
Sbjct: 412 VDGQQIHLYAGAGIVA------------GSDAEQEWQEIDNKSAGLQSLLEHEAQPVKA 458
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 29.8 bits (68), Expect = 4.6
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 29 LTLIVGENGCGKTTI 43
LT + G GKTT+
Sbjct: 22 LTQVYGPYASGKTTL 36
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 30.3 bits (69), Expect = 4.6
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 29/126 (23%)
Query: 501 KLNRVNSEIDQLSKSLDPDQLKNEIEAWIRQRNELEDELCV----IDAEISILQAQNITL 556
L R+ ++ L D Q + ++ ELE L D E A+ ++
Sbjct: 2 DLERLAQRLEGLGGIFDIPQKETRLK-------ELERRLEDPSLWNDPE----AARKVS- 49
Query: 557 AEIKSLKNRKESKLADINLLKERHDRAFHLLFDMIPEENFKNSLDKALSSITFDINRIQE 616
E L+ + L+ L + +P E +AL ++ +
Sbjct: 50 QEAARLRR----TVDTFRSLESDLQGL-LELMEELPAEE-----REALKP---ELEEAAK 96
Query: 617 DINAKE 622
++
Sbjct: 97 KLDELY 102
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.4 bits (68), Expect = 4.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 26 QRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67
R ++VG G GK+TI E + + +Y S N +
Sbjct: 23 YRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIE 64
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'- diphosphate;
HET: A3P RTL; 2.00A {Spodoptera frugiperda} SCOP:
c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 30.3 bits (68), Expect = 4.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 1373 IFGPYFDHQTQSWKRRHNSDIHALS 1397
PYF+H ++W +RH+ ++ L
Sbjct: 223 TLTPYFEHVKEAWAKRHDPNMLFLF 247
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 30.0 bits (68), Expect = 5.1
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 1371 RTIFGPYFDHQTQSWKRRHNSDIHALS 1397
++G +FDH R + LS
Sbjct: 165 TVLYGSWFDHIHGWMPMREEKNFLLLS 191
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 29.4 bits (65), Expect = 5.1
Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 2/135 (1%)
Query: 824 ELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEK 883
+LN + + Q++ I D + + + ++ +E+ R I E+
Sbjct: 21 QLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEE 80
Query: 884 LQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGMDSVYQTELEELGRKVAPIETQL 943
L K+ D+ + M+ K +E ++ +L E + + QL
Sbjct: 81 ADKLNKEVEDLTASLFDEA--NNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQL 138
Query: 944 NLAQSELDALKKEHK 958
+ + +L E
Sbjct: 139 KNLKKVMHSLDNEST 153
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform A;
pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 30.2 bits (68), Expect = 5.2
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 1371 RTIFGPYFDHQTQSWKRRHNSDIHALS 1397
FG +FDH + + + ++
Sbjct: 168 EVQFGSWFDHIKGWLRMKGKDNFLFIT 194
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 29.9 bits (68), Expect = 5.8
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 27/78 (34%)
Query: 1234 AIDRAYVVRIVRDHKALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQL 1283
A+ RA +V+D + LDEP +NLD +K + L
Sbjct: 150 ALARA----LVKDPS-----------LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTL 194
Query: 1284 IVITHDEEFIENLTAIDR 1301
+V++HD + DR
Sbjct: 195 LVVSHDP--ADIFAIADR 210
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.6 bits (69), Expect = 5.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 32 IVGENGCGKTTIIECIKFALTN 53
+VG+ GCGKT + + A+
Sbjct: 928 LVGKAGCGKTATWKTVIDAMAI 949
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform B;
pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A {Homo
sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 29.8 bits (67), Expect = 6.2
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 1371 RTIFGPYFDHQTQSWKRRHNSDIHALS 1397
FG +FDH + + + ++
Sbjct: 170 EVQFGSWFDHIKGWLRMKGKDNFLFIT 196
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex,
type III secretion, T3 complex, HOST pathogen
interaction; HET: DXC; 2.19A {Salmonella enterica subsp}
PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Length = 305
Score = 29.9 bits (66), Expect = 6.4
Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 16/263 (6%)
Query: 269 MKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGDKAELQSK 328
+ E L +L K + +++ YQ+K +E ++ + + + K + + +
Sbjct: 27 QTQVTEALDKLAAKPSDPALL-AAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNFRGG 85
Query: 329 LNLFKINLDEKCSELENQ-ERLKSQYI-------QEEKQSHTHINEAQMKLGKL--ERDE 378
I+ E + + Y+ + ++ K+G +
Sbjct: 86 SGGTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVYTDFYQAFSDILSKMGGWLLPGKD 145
Query: 379 ETHKKLN-DTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILER 437
KL+ +LK LN+L + + + + G G+ ++ ++LS++ +
Sbjct: 146 GNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQSGSGVKVATEAEARQWLSELNLPNS 205
Query: 438 TFSDNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNV---ITQINEV-NQSQS 493
+ ++ ++K+ + + + D + ++
Sbjct: 206 CLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEENMKT 265
Query: 494 TLQVLQTKLNRVNSEIDQLSKSL 516
TLQ L K + NS D L K L
Sbjct: 266 TLQTLTQKYSNANSLYDNLVKVL 288
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 29.8 bits (68), Expect = 6.6
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 3 LLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTII 44
+L+ L+ N P + V+ ++VG NG GKTT
Sbjct: 87 ILEILNFDTKLNVPPEPPFVI-------MVVGVNGTGKTTSC 121
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 30.1 bits (67), Expect = 6.7
Identities = 16/115 (13%), Positives = 45/115 (39%), Gaps = 15/115 (13%)
Query: 205 KYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADSKKQLIYNNTQKRDQSFEELHN 264
+++ K Q R+++ KA + K D+K + + + +K
Sbjct: 472 NLQTKIDAKKEQLADARRDLKSAKA------DAKVMKDAKTKKVVESKKKA--------- 516
Query: 265 IEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFS 319
++ + + + VQ T++E N + + + + C + I+++++
Sbjct: 517 VQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYN 571
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo sapiens}
SCOP: c.37.1.5
Length = 296
Score = 29.7 bits (67), Expect = 7.6
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 1371 RTIFGPYFDHQTQSWKRRHNSDIHALS 1397
+ ++G +FDH W+ + I L
Sbjct: 167 KVVWGSWFDHVKGWWEMKDRHQILFLF 193
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 29.0 bits (64), Expect = 8.9
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 6/155 (3%)
Query: 256 DQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIK 315
+ ++E + Q +K R + +Y E M + + +IK
Sbjct: 3 QDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK 62
Query: 316 QLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLE 375
E Q + + E E+ + + ++ + I E KLE
Sbjct: 63 IF------EEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLE 116
Query: 376 RDEETHKKLNDTLKTKLNNLADTLCLDTTAKSQYT 410
++ N + ++N+L L + QY
Sbjct: 117 QELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYL 151
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 28.3 bits (62), Expect = 9.1
Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 3/124 (2%)
Query: 767 DTDIPSLRSKLIELEENVIETKGELKKLKTALETPKTKEKTALSLQGDLTLLDQNIRELN 826
D + + ++K+ ELE V + ELK++ + KE LQ L + +L
Sbjct: 5 DAEEVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLE 64
Query: 827 TLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTRLNSHNEKLQS 886
L +++ +++I+ + ++ + K L I + + L L+
Sbjct: 65 ELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGL---EKTIAAKKAELEKTEADLKK 121
Query: 887 LQKQ 890
+
Sbjct: 122 AVNE 125
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 29.3 bits (65), Expect = 9.6
Identities = 23/233 (9%), Positives = 79/233 (33%), Gaps = 15/233 (6%)
Query: 523 NEIEAWIRQRNELEDELCVIDAEISILQAQNITLAEIKSLKNRKESKLADINLLKERHDR 582
+ E W + ++ + ++ +L E+++L + E+ +D+ ++R ++
Sbjct: 24 STHETWAYGKEQI----------LLQKDYESASLTEVRALLRKHEAFESDLAAHQDRVEQ 73
Query: 583 AFHLLFDMIPEENF-KNSLDKALSSITFDINRIQEDINAKEKHLYTLEANVSNSSKTLRD 641
+ ++ + +++ I +R+ + + L +E + + +
Sbjct: 74 IAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLE 133
Query: 642 QKRTLAEL---MDRMELVLGSKPFEDELDRVTLELKREQEEVSMMTSTQYLFNSYIGKLE 698
+ A M+ L ++ + + ++ + + S +
Sbjct: 134 FAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQN 193
Query: 699 ENEPRCPLCTRFFESDYS-VPGLVNKLKTKIKEIPEQTNNKKTHIDQLCKQQR 750
E E S +++L+TK ++ + + + + +Q
Sbjct: 194 EVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQH 246
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta estradiol,
steroid-binding; HET: A3P EST; 1.60A {Mus musculus} SCOP:
c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A* 1g3m_A*
Length = 297
Score = 29.4 bits (66), Expect = 9.7
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 1371 RTIFGPYFDHQTQSWKRRHNSDIHALS 1397
+ +G ++DH W++ NS + +
Sbjct: 168 QVPYGSWYDHVKAWWEKSKNSRVLFMF 194
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.362
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 21,283,175
Number of extensions: 1292556
Number of successful extensions: 3445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3217
Number of HSP's successfully gapped: 404
Length of query: 1491
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1385
Effective length of database: 3,742,167
Effective search space: 5182901295
Effective search space used: 5182901295
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (28.7 bits)