RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9513
(1491 letters)
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 59.1 bits (141), Expect = 2e-09
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGK 63
L+++ + R+ + VV F+ + LI+G+NG GK+++++ I L
Sbjct: 3 LERVTVKNFRSH---SDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKD 59
Query: 64 NFVH 67
F
Sbjct: 60 EFTK 63
Score = 49.5 bits (116), Expect = 2e-06
Identities = 34/251 (13%), Positives = 81/251 (32%), Gaps = 14/251 (5%)
Query: 1065 SEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHT 1124
+E ++ + L I ++ +R + + E++ D + +
Sbjct: 112 TEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYK 171
Query: 1125 LENCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKK 1184
+ + K + +++ ++ + D EK + Y +
Sbjct: 172 KLSELKKTINNRIKEYRDILARTERERVKKEIKDLEKAKDFTEELIEKVKKYKALAREAA 231
Query: 1185 NGIEQDMRNRCSAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIV 1244
++ + A + + + K +V E + L+ +R +
Sbjct: 232 LSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAF 291
Query: 1245 RDHKALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIEN 1295
A++ + + LDEPT LD + +K Q+I+++HDEE +
Sbjct: 292 --RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD- 348
Query: 1296 LTAIDRAYVVR 1306
A D +
Sbjct: 349 --AADHVIRIS 357
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 54.3 bits (129), Expect = 2e-08
Identities = 35/232 (15%), Positives = 59/232 (25%), Gaps = 27/232 (11%)
Query: 6 QLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNF 65
+ + + N+ R +T + G NG GK+T + AL +
Sbjct: 3 KFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTL-------- 54
Query: 66 VHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKN 125
EA A+SG GK L + V V L
Sbjct: 55 ---LHFRNTTEAGATSGSR--DKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGR 109
Query: 126 GKDNCATRDT--TISRKIFATGVQKNLGCLQQESVLEMCN-----------LIGVSKAIL 172
+ + + T + +Q VL + +I
Sbjct: 110 DRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSIT 169
Query: 173 NNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKALESIKIQ-RDRLRKE 223
+ + F + +A+ Y +I RD L E
Sbjct: 170 DYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPE 221
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 53.4 bits (127), Expect = 1e-07
Identities = 41/309 (13%), Positives = 98/309 (31%), Gaps = 16/309 (5%)
Query: 1 MALLDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQG-- 58
M +++L + G +++ +K V+ F + T IVG NG GK+ I + I F L +
Sbjct: 1 MPYIEKLELKGFKSY-GNKKVVIPFSKGFTAIVGANGSGKSNIGDAILFVLGGLSAKAMR 59
Query: 59 ASSGKNFVHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRS 118
AS + + + A F ++ R DE +++ + + + +
Sbjct: 60 ASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGR 119
Query: 119 LLLSNKNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFC 178
++ A + I G + + + I V +
Sbjct: 120 RATRSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISVFMRTFEAISRN 179
Query: 179 HQENSSWPLDEGKKVKEIFDEI--------FDATKYNKALESIKIQRDRLRKEIPEIKAH 230
E + G + + +A K ++ I + + + A
Sbjct: 180 FSEIFAKLSPGGSARLILENPEDPFSGGLEIEAKPAGKDVKRI----EAMSGGEKALTAL 235
Query: 231 YQATLNYKKEADSKKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMS 290
K + + D + + + ++ + ++ +V +T ++ M+
Sbjct: 236 AFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIV-ITLRDVMMANAD 294
Query: 291 TQYQTKKTE 299
+
Sbjct: 295 KIIGVSMRD 303
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 52.1 bits (123), Expect = 2e-07
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 12 IRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVH 67
++NF + + VV F+ + LI+G+NG GK+++++ I L F
Sbjct: 8 VKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK 63
Score = 40.9 bits (94), Expect = 7e-04
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 1247 HKALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLT 1297
A++ + + LDEPT LD + +K Q+I+++HDEE +
Sbjct: 215 RLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKD--- 271
Query: 1298 AIDRAYVV 1305
A D +
Sbjct: 272 AADHVIRI 279
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 51.6 bits (122), Expect = 5e-07
Identities = 36/367 (9%), Positives = 107/367 (29%), Gaps = 30/367 (8%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGK 63
L L + +++ +V + T I+G NG GK+ +++ I F L G S
Sbjct: 3 LVGLELSNFKSY-RGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVL------GVRSNH 55
Query: 64 NFVHDPRIGKKDEASASSGKNFVHDPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSN 123
++ K+ ++ R DE + +N V++
Sbjct: 56 L-------------RSNILKDLIY--RGVLNDENSDDYDNEGAASSNPQSAYVKAFYQKG 100
Query: 124 KNGKDNCATRDTTISRKIFATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENS 183
+ + R I G + S + + ++ F +
Sbjct: 101 N--------KLVELMRIISRNGDTSYKIDGKTVSYKDYSIFLENENILIKAKNFLVFQGD 152
Query: 184 SWPLDEGKKVKEIFDEIFDATKYNKALESIKIQRDRLRKEIPEIKAHYQATLNYKKEADS 243
+ V+ + E +++ + ++ + +
Sbjct: 153 VEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTY 212
Query: 244 KKQLIYNNTQKRDQSFEELHNIEESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMI 303
K + Q S + + + ++ EK+ + + + K+
Sbjct: 213 KSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEKTF 272
Query: 304 QESCNELESSIKQLFSGDKAELQSKLNLFKINLDEKCSELENQERLKSQYIQEEKQSHTH 363
+ L++ ++L + ++ + ++++ + + + + +
Sbjct: 273 DYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEY 332
Query: 364 INEAQMK 370
++ +
Sbjct: 333 LSGGEKT 339
Score = 43.2 bits (100), Expect = 2e-04
Identities = 34/264 (12%), Positives = 59/264 (22%), Gaps = 28/264 (10%)
Query: 1067 IMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLE 1126
+ D+ + + + + SI + KLS+ +
Sbjct: 148 VFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHG 207
Query: 1127 NCVIKYHSQKMRSINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNG 1186
+ ++ + + ++K
Sbjct: 208 ELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKEL 267
Query: 1187 IEQDMRNRCSAGQRV---LACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRI 1243
E+ + L N L + DE F + + R
Sbjct: 268 FEKTFDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRF 327
Query: 1244 VRDHK---------ALAETFS----RNCGIFALDEPTTNLDIKNAS---------DQKNF 1281
ALA F+ + F LDE LDI N +
Sbjct: 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDL 387
Query: 1282 QLIVITHDEEFIENLTAIDRAYVV 1305
Q IVI+ E D V
Sbjct: 388 QFIVISLKNTMFEKS---DALVGV 408
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 47.7 bits (112), Expect = 5e-06
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 4 LDQLHIMGIRNFPADKNRVVRFQRPLTLIVGENGCGKTTIIECIKFAL 51
L +L++ G ++F + ++ F +T IVG NG GK+ II+ IK+
Sbjct: 3 LKKLYLKGFKSF-GRPS-LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 40.7 bits (95), Expect = 6e-04
Identities = 32/192 (16%), Positives = 53/192 (27%), Gaps = 36/192 (18%)
Query: 1137 MRSINRLIREYWTRIY-QGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRC 1195
+ I ++ R+Y + DI A E R Q
Sbjct: 47 INVITGFLKADEGRVYFENKDITNKEPA-------ELYHYGIVRTFQ-----TPQPLKEM 94
Query: 1196 SAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHK------- 1248
+ + +L I F I +EE +E I + + D K
Sbjct: 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGG 154
Query: 1249 -----ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIE 1294
+ N + +DEP + A D K ++I H + +
Sbjct: 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 214
Query: 1295 NLTAIDRAYVVR 1306
N D YV+
Sbjct: 215 NYI--DHLYVMF 224
Score = 33.4 bits (76), Expect = 0.15
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
I+G NG GK+T+I I
Sbjct: 35 IIGPNGSGKSTLINVI 50
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 39.4 bits (92), Expect = 0.002
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAID 1300
A+A R+ I LDE T+ LD ++ QKN +VI H IE D
Sbjct: 162 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ---AD 218
Query: 1301 RAYVV---RIV 1308
VV IV
Sbjct: 219 EIVVVEDGIIV 229
Score = 31.4 bits (71), Expect = 0.66
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+VG +G GK+TI I
Sbjct: 43 TVALVGRSGSGKSTIASLI 61
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAID 1300
++A F N I LDE T+ LD+++ S K+ +++ H I + D
Sbjct: 164 SIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH---AD 220
Query: 1301 RAYVV---RIV 1308
+ V+ IV
Sbjct: 221 KIVVIENGHIV 231
Score = 31.3 bits (71), Expect = 0.71
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 29 LTLIVGENGCGKTTIIECI 47
VG +G GK+T+I I
Sbjct: 46 TVAFVGMSGGGKSTLINLI 64
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 37.6 bits (87), Expect = 0.008
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI 1299
+LA ++ ++ LD P LD+ N I++T E +
Sbjct: 168 SLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRK---A 224
Query: 1300 DRAYVVR 1306
D+ ++
Sbjct: 225 DKILILH 231
Score = 32.2 bits (73), Expect = 0.44
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+ I G G GKT+++ I
Sbjct: 64 MLAITGSTGSGKTSLLMLI 82
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 37.1 bits (86), Expect = 0.009
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
A+A + N I D+PT LD +K +++ ++V+THD
Sbjct: 155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG-- 212
Query: 1299 IDRAYVV---RIVRDHK 1312
+R + + R+ K
Sbjct: 213 -ERIIYLKDGEVEREEK 228
Score = 28.3 bits (63), Expect = 5.6
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
I+G +G GK+T++ I
Sbjct: 36 IMGPSGSGKSTMLNII 51
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 35.8 bits (82), Expect = 0.031
Identities = 31/232 (13%), Positives = 80/232 (34%), Gaps = 21/232 (9%)
Query: 769 DIPSLRSKLIELEENVIETKGELKKLKTA------------------LETPKTKEKTALS 810
D P RS L EE+ + +L A + K EK
Sbjct: 10 DSPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP 69
Query: 811 LQGDLTLLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKI 870
L GD ++ +++ + + EL + +S + + + + ++ E+ T +
Sbjct: 70 LGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAM-MFPITQFKERDLKEILTLKEVF 128
Query: 871 ESGQTRLNSHNEKLQSLQKQKNDIHSKQLTVQGGAGMLKSLEDRKCELEGM--DSVYQTE 928
+ ++ + L K++ + K + K Y+ +
Sbjct: 129 QIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKK 188
Query: 929 LEELGRKVAPIETQLNLAQSELDALKKEHKKKLNEEGAKIQDYTKQLEEVKR 980
+ L + ++ Q++ + + L ++ ++ L G +Q+ ++++
Sbjct: 189 IALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIE 240
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 35.3 bits (81), Expect = 0.039
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAID 1300
A+A N I DE T+ LD ++ K +I+I H ++N D
Sbjct: 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---AD 205
Query: 1301 RAYVV---RIV 1308
R V+ +IV
Sbjct: 206 RIIVMEKGKIV 216
Score = 31.8 bits (72), Expect = 0.51
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
IVG +G GK+T+ + I
Sbjct: 34 IVGRSGSGKSTLTKLI 49
Score = 28.0 bits (62), Expect = 7.6
Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 44/202 (21%)
Query: 1091 MRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCVIKYHSQKMRSINRLIREYWTR 1150
+ I R ++ I DL + Q +NR I + +
Sbjct: 46 TKLIQRFYIPENGQVL------IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISL 99
Query: 1151 IYQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRVLAC------ 1204
G ++ + AA + + + + N I + S GQR
Sbjct: 100 ANPGMSVEKVIYAAKL----AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 155
Query: 1205 ---------------------LIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVV-- 1241
+I+R K +I+I H ++N DR V+
Sbjct: 156 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN---ADRIIVMEK 212
Query: 1242 -RIVRDHKALAETFSRNCGIFA 1262
+IV K E S +++
Sbjct: 213 GKIVEQGKH-KELLSEPESLYS 233
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 34.1 bits (78), Expect = 0.096
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
+VG NG GK+T++ +
Sbjct: 30 LVGPNGAGKSTLLARM 45
Score = 30.7 bits (69), Expect = 1.1
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 11/75 (14%)
Query: 1241 VRIVRDHKALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEE 1291
VR+ + + + LDEP +LD+ S Q+ +++ +HD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 1292 FIENLTAIDRAYVVR 1306
RA++++
Sbjct: 194 HTLRHA--HRAWLLK 206
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 33.4 bits (75), Expect = 0.11
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 31 LIVGENGCGKTTIIECI 47
+I GE G GKTT+++ I
Sbjct: 4 IITGEPGVGKTTLVKKI 20
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 33.4 bits (76), Expect = 0.11
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 16/66 (24%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
LA T N I+ LD+P +D I +K +I + +
Sbjct: 135 QLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY------ 188
Query: 1299 IDRAYV 1304
D
Sbjct: 189 CDVNEN 194
Score = 32.2 bits (73), Expect = 0.34
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 32 IVGENGCGKTTIIECI 47
G NG GKTT+++ I
Sbjct: 32 FHGPNGIGKTTLLKTI 47
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 33.8 bits (77), Expect = 0.12
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 32 IVGENGCGKTTIIECI 47
++G G GK+ +E I
Sbjct: 29 LLGPTGAGKSVFLELI 44
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 33.5 bits (76), Expect = 0.12
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 32 IVGENGCGKTTIIECI 47
I+G G GKT +E I
Sbjct: 31 ILGPTGAGKTLFLELI 46
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 33.4 bits (76), Expect = 0.13
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
VG +GCGK+T++ I
Sbjct: 31 FVGPSGCGKSTLLRMI 46
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 33.5 bits (76), Expect = 0.14
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 32 IVGENGCGKTTIIECI 47
I+G +G GKTT + I
Sbjct: 36 ILGPSGAGKTTFMRII 51
Score = 27.7 bits (61), Expect = 9.2
Identities = 21/167 (12%), Positives = 52/167 (31%), Gaps = 15/167 (8%)
Query: 1081 NCVIKYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENC--VIKYHSQKMR 1138
+ + + + S +LI R + L EN +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA---LYPNLTAFENIAFPLTNMKMSKE 115
Query: 1139 SINRLIREYWTRIYQGNDIDYISIAADVGTGSEKRRTYNYRVV---QKKNGIEQDMRNRC 1195
I + + E + + +++ +++R R + +++ N
Sbjct: 116 EIRKRVEEVAKILDIHHVLNHFPRELSGA---QQQRVALARALVKDPSLLLLDEPFSNLD 172
Query: 1196 SAGQRVLACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVR 1242
+ + L+ + + L+V++HD I + DR V+
Sbjct: 173 ARMRDSARALVKEVQ--SRLGVTLLVVSHDPADIFAIA--DRVGVLV 215
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 33.3 bits (76), Expect = 0.15
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 32 IVGENGCGKTTIIECI 47
++G NG GKTT + I
Sbjct: 37 LIGANGAGKTTTLSAI 52
Score = 32.6 bits (74), Expect = 0.28
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 11/67 (16%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI 1299
A+ + +DEP+ L S+ Q+ ++++ + +
Sbjct: 149 AIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA-- 206
Query: 1300 DRAYVVR 1306
YV+
Sbjct: 207 HYGYVLE 213
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 33.4 bits (76), Expect = 0.15
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 32 IVGENGCGKTTIIECI 47
++G NG GKTT + I
Sbjct: 33 LIGPNGAGKTTTLRII 48
Score = 29.6 bits (66), Expect = 2.4
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIENLTAI 1299
+A N + LDEPT+ LD+ NA + Q+ ++V +H+ +E L
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC-- 200
Query: 1300 DRAYVVR 1306
DR ++
Sbjct: 201 DRIALIH 207
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 33.4 bits (76), Expect = 0.15
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
++G +GCGKTT + I
Sbjct: 34 LLGPSGCGKTTTLRMI 49
Score = 29.1 bits (65), Expect = 3.2
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNAS----------DQKNFQLIVITHDEEFIENLTA 1298
AL R +F +DEP +NLD K Q I +THD+ +
Sbjct: 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG- 207
Query: 1299 IDRAYVVR 1306
DR V+
Sbjct: 208 -DRIAVMN 214
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 33.3 bits (76), Expect = 0.16
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
I+G +G GK+T + CI
Sbjct: 33 IIGSSGSGKSTFLRCI 48
Score = 32.5 bits (74), Expect = 0.33
Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 33/191 (17%)
Query: 1137 MRSINRLIREYWTRI-YQGNDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMR--N 1193
+R IN L + I G +I+ + ++K + R + + Q +
Sbjct: 45 LRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLR--TRLTMVFQHFNLWS 102
Query: 1194 RCSAGQRVLACLIIRLFIS----DQKNFQLIVITHDEEFIEN-----LTAIDRAYVVRIV 1244
+ + V+ I L +S ++ + + +E + L+ + V
Sbjct: 103 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRV---- 158
Query: 1245 RDHKALAETFSRNCGIFALDEPTTNLDIKNASD---------QKNFQLIVITHDEEFIEN 1295
++A + + DEPT+ LD + + ++ ++V+TH+ F +
Sbjct: 159 ----SIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH 214
Query: 1296 LTAIDRAYVVR 1306
++ +
Sbjct: 215 VS--SHVIFLH 223
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 33.2 bits (76), Expect = 0.18
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
A+A + +DEP +NLD IK + I +THD+ +
Sbjct: 146 AVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG- 204
Query: 1299 IDRAYVVR 1306
DR V+
Sbjct: 205 -DRIAVMN 211
Score = 33.2 bits (76), Expect = 0.19
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 32 IVGENGCGKTTIIECI 47
++G +GCGKTT + I
Sbjct: 37 LLGPSGCGKTTTLRMI 52
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 33.0 bits (75), Expect = 0.24
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
ALA R + LD+ T+ LD + + ++ + +++IT +E
Sbjct: 161 ALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ--- 217
Query: 1299 IDRAYVV---RIV 1308
D + I
Sbjct: 218 ADHILFLEGGAIR 230
Score = 31.8 bits (72), Expect = 0.51
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 29 LTLIVGENGCGKTTIIECI 47
+T +VG NG GK+T+ +
Sbjct: 42 VTALVGPNGSGKSTVAALL 60
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 32.5 bits (74), Expect = 0.28
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 32 IVGENGCGKTTIIECI 47
G +G GK+TI +
Sbjct: 33 FAGPSGGGKSTIFSLL 48
Score = 31.4 bits (71), Expect = 0.63
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 14/71 (19%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLDIKNASD--------QKNFQLIVITHDEEFIENLTAID 1300
A+A F RN I LDE T +LD ++ S K +VI H I + D
Sbjct: 149 AIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD---AD 205
Query: 1301 RAYVV---RIV 1308
+ Y + +I
Sbjct: 206 KIYFIEKGQIT 216
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 31.3 bits (69), Expect = 0.76
Identities = 12/87 (13%), Positives = 23/87 (26%)
Query: 28 PLTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVH 87
++ G G GKTT + L + + +S G K+ S +
Sbjct: 53 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 112
Query: 88 DPRIGKKDETHAIVKLQCTCENNDTVC 114
+ V + +
Sbjct: 113 HNEEAQNLNGKHFVIIMDEVDGMSGGD 139
>d2gk3a1 c.23.16.9 (A:8-253) Putative cytoplasmic protein STM3548
{Salmonella typhimurium [TaxId: 90371]}
Length = 246
Score = 30.9 bits (69), Expect = 0.86
Identities = 5/26 (19%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 1458 RWGLNDWEELTQHRVLWRQAV-WFSR 1482
WG + + LW + + +R
Sbjct: 220 HWGTQQFMSWPFYTDLWVNTLQFIAR 245
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 31.0 bits (70), Expect = 0.99
Identities = 14/75 (18%), Positives = 33/75 (44%), Gaps = 15/75 (20%)
Query: 1249 ALAETFSRNCGIFALDEPTTNLD----------IKNASDQKNFQLIVITHDEEFIENLTA 1298
A+A + N + DE T+ LD +K+ + + +++ITH+ + ++ +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC- 208
Query: 1299 IDRAYVV---RIVRD 1310
D V+ ++
Sbjct: 209 -DCVAVISNGELIEQ 222
Score = 29.1 bits (65), Expect = 4.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 32 IVGENGCGKTTIIECI 47
++G +G GK+T+I C+
Sbjct: 36 VIGASGAGKSTLIRCV 51
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 30.5 bits (67), Expect = 1.4
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHD 68
+T + GE GK+ + + G GK D
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 75
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 30.9 bits (69), Expect = 1.6
Identities = 51/424 (12%), Positives = 126/424 (29%), Gaps = 40/424 (9%)
Query: 208 KALESIKIQRDRLRKEIPEIKAHYQA----TLNYKKEADSKKQLIYNNTQKRDQSFEELH 263
+ +S + + R+ KE+ I++ ++ KK+ K L++ D F +
Sbjct: 13 RNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCK--LLFIFLLGHDIDFGHME 70
Query: 264 NIE--ESMKPINEKLVQLTEKERNMSVMSTQYQTKKTERDMIQESCNELESSIKQLFSGD 321
+ S + +++ L + ++I+ N + L S +
Sbjct: 71 AVNLLSSNRYTEKQIGYLFIS-----------VLVNSNSELIRLINNAI---KNDLASRN 116
Query: 322 KAELQSKLN-LFKINLDEKCSELENQERLKSQYIQEEKQSHTHINEAQMKLGKLERDEET 380
+ L+ + + E + ++L + D
Sbjct: 117 PTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP 176
Query: 381 HKKLNDTLKTKLNNLADTLCLDTTAKSQYTPEEGEGLIKMSQTTIDKYLSDIKILERTFS 440
+ LN+ + T+ ++ K S + LS I +
Sbjct: 177 MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRI------VT 230
Query: 441 DNENTKQAEINALIVEKVELESKIKSFKQQIEGNKKDLTNVITQINEVNQSQSTLQVLQT 500
Q + ++ + + +T+ E +++
Sbjct: 231 SASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSK 290
Query: 501 KLNRVNSEIDQLSKSLDP-DQLKNEIEAWIRQRNELEDELCVIDAEISILQAQNITL--- 556
K+ N++ L +++ +E +R N+L L + + L +++
Sbjct: 291 KVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLAS 350
Query: 557 --AEIKSLKNRKESKL--ADINLLKERHDRAFHLLFDMIPEENFK---NSLDKALSSITF 609
+++K E+ + RA LL+ M N + + L + +
Sbjct: 351 SEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADY 410
Query: 610 DINR 613
I
Sbjct: 411 SIRE 414
Score = 29.7 bits (66), Expect = 3.1
Identities = 29/234 (12%), Positives = 68/234 (29%), Gaps = 11/234 (4%)
Query: 1025 INEINQSIANQSLEEIDLKNNLTLLEKKEAVAKLNEELKLSEIMISDLTKYHHTLENCVI 1084
I + Q + + L + A L + K L+
Sbjct: 203 ITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPP 262
Query: 1085 KYHSQKMRSINRLIREYWTRIYQLKLSEIMISDLTKYHHTLENCV--IKYHSQKMRSINR 1142
+ + + Q + + L + I +H + + R
Sbjct: 263 PEDPAVRGRLTECLETILNKA-QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR 321
Query: 1143 LIREYWTRIYQG-NDIDYISIAADVGTGSEKRRTYNYRVVQKKNGIEQDMRNRCSAGQRV 1201
+ + ++ Y+++ + + T + ++ + I R + ++
Sbjct: 322 ACNQLGQFLQHRETNLRYLALES-MCTLASSEFSHEAVKTHIETVINALKTERDVSVRQR 380
Query: 1202 LACLIIRLFISDQKNFQLIVITHDEEFIENLTAIDRAYVVRIVRDHKALAETFS 1255
+ + + D+ N Q IV E + L D + IV LAE ++
Sbjct: 381 --AVDLLYAMCDRSNAQQIV----AEMLSYLETADYSIREEIVLKVAILAEKYA 428
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.6 bits (65), Expect = 2.1
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 28 PLTLIVGENGCGKTTIIECI 47
PL +G GKTT+++ +
Sbjct: 3 PLLAFAAWSGTGKTTLLKKL 22
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 29.6 bits (65), Expect = 2.2
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 31 LIVGENGCGKTTIIECI 47
+ G G GKTT+I
Sbjct: 5 FLTGPPGVGKTTLIHKA 21
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 2.6
Identities = 19/170 (11%), Positives = 49/170 (28%), Gaps = 11/170 (6%)
Query: 31 LIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHDPR 90
+++G++ GKT + +P + IG A +
Sbjct: 6 IVIGDSNVGKTCLTYRF---CAGRFPDR--------TEATIGVDFRERAVDIDGERIKIQ 54
Query: 91 IGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL 150
+ K + VV ++N + + + A + + L
Sbjct: 55 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRIL 114
Query: 151 GCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEI 200
+ + + +++ + E S+ ++ V+ IF +
Sbjct: 115 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.2 bits (64), Expect = 3.0
Identities = 22/176 (12%), Positives = 45/176 (25%), Gaps = 10/176 (5%)
Query: 31 LIVGENGCGKTTIIECI---KFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVH 87
++VG+ GKT ++ F + + + +++
Sbjct: 13 VVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR 72
Query: 88 DPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQ 147
+ ++ + + + + I +I
Sbjct: 73 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLL---IGTQIDLRDDP 129
Query: 148 KNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDA 203
K L L +C G A E S+ K +K +FDE A
Sbjct: 130 KTLARLNDMKEKPICVEQGQKLAKEIGACCYV-ECSAL---TQKGLKTVFDEAIIA 181
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 28.7 bits (63), Expect = 4.0
Identities = 13/88 (14%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHD 88
+ + VG G GK+T I+ + R +A+ GK V D
Sbjct: 16 VVVAVGFPGAGKSTFIQ----EHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVID 71
Query: 89 PRIGKKDETHAIVKLQCTCENNDTVCVV 116
++
Sbjct: 72 NTNPDVPSRARYIQCAKDAGVPCRCFNF 99
>d1kcxa1 b.92.1.3 (A:15-66,A:401-490) Dihydropyrimidinase related
protein-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 142
Score = 27.9 bits (62), Expect = 4.5
Identities = 8/58 (13%), Positives = 16/58 (27%)
Query: 1393 IHALSKQPNIVATMNTNRLRWLGHLMRIDKNRAVWKIFTNTPHQGKRLPGRPRSCWIN 1450
I A + I + + + W M+ ++ +G G P
Sbjct: 44 IEANGRMVIIAVGSDADVVIWDPDKMKTITAKSHKSTVEYNIFEGMECHGSPLVVISQ 101
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga
maritima [TaxId: 2336]}
Length = 122
Score = 27.4 bits (60), Expect = 5.4
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 510 DQLSKSLDPDQLKNEIEAWIRQRNE 534
D L K D +L + A IR+++E
Sbjct: 98 DYLPKPFDLRELIARVRALIRRKSE 122
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 27.9 bits (61), Expect = 5.8
Identities = 22/172 (12%), Positives = 55/172 (31%), Gaps = 20/172 (11%)
Query: 31 LIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHD-P 89
+I+G+ G GK+ ++ ++ RI + G+
Sbjct: 8 IIIGDMGVGKSCLLHQF---TEKKFMADCPHTIGVEFGTRIIEVS------GQKIKLQIW 58
Query: 90 RIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKN 149
++ A+ + + ++ ++ ++ ++ T V
Sbjct: 59 DTAGQERFRAVTRSYY----RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIIL 114
Query: 150 LG-CLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEI 200
+G E+ ++ A N ++F E S+ G+ V++ F E
Sbjct: 115 IGNKADLEAQRDVTYEEAKQFAEENGLLFL--EASAK---TGENVEDAFLEA 161
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 28.2 bits (61), Expect = 6.0
Identities = 20/176 (11%), Positives = 44/176 (25%)
Query: 29 LTLIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHD 88
+T + GE GKT I + +G GK D + E + + +
Sbjct: 25 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLS 84
Query: 89 PRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQK 148
+ +A + + AT +
Sbjct: 85 GSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSAR 144
Query: 149 NLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDAT 204
+ + +L ++ N + + ++ + KK +T
Sbjct: 145 QMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAST 200
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.9 bits (61), Expect = 6.7
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 31 LIVGENGCGKTTIIECIKF 49
L++G GK+T ++ ++
Sbjct: 6 LLLGAGESGKSTFLKQMRI 24
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.5 bits (63), Expect = 6.8
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 31 LIVGENGCGKTTIIE 45
+++GE G GKT I+E
Sbjct: 47 VLIGEPGVGKTAIVE 61
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 27.2 bits (60), Expect = 8.1
Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 9/108 (8%)
Query: 817 LLDQNIRELNTLQRELERQESKISGMRSTGVDLDQVLAQQKEKKNELNTFRSKIESGQTR 876
L ++ ++ +T + +E + L +V A ++ + F S + + Q R
Sbjct: 15 LAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEA----FESDLAAHQDR 70
Query: 877 LNSHNEKLQSLQKQKN----DIHSKQLTVQGG-AGMLKSLEDRKCELE 919
+ Q L + +++ + + + + R+ LE
Sbjct: 71 VEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALE 118
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 8.2
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 14 NFPADKNRVVRFQRPLTLIVGENGCGKTTII 44
N P + V+ ++VG NG GKTT
Sbjct: 5 NVPPEPPFVI-------MVVGVNGTGKTTSC 28
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 8.3
Identities = 28/188 (14%), Positives = 59/188 (31%), Gaps = 22/188 (11%)
Query: 31 LIVGENGCGKTTIIECIKFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVHDPR 90
+++GE G GK+T+ + G++ + + A+ + +
Sbjct: 7 VLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE 66
Query: 91 IGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATRDTTISRKIFATGVQKNL 150
+ V + T + T I G + +L
Sbjct: 67 NEWLHDHCMQVGDAYLIVYSITDRAS---FEKASELRIQLRRARQTEDIPIILVGNKSDL 123
Query: 151 GCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEIFDATKYNKAL 210
++ SV E A++ + F E S+ VKE+F+ I +
Sbjct: 124 VRCREVSVSEGRA-----CAVVFDCKFI--ETSAA---VQHNVKELFEGI---------V 164
Query: 211 ESIKIQRD 218
++++RD
Sbjct: 165 RQVRLRRD 172
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.6 bits (60), Expect = 8.7
Identities = 12/106 (11%), Positives = 24/106 (22%)
Query: 1367 NKVYRTIFGPYFDHQTQSWKRRHNSDIHALSKQPNIVATMNTNRLRWLGHLMRIDKNRAV 1426
+ P Q + + +K+ V R WL + +
Sbjct: 45 KHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHY 104
Query: 1427 WKIFTNTPHQGKRLPGRPRSCWINEMKRLCNRWGLNDWEELTQHRV 1472
+ T +R R + + D H +
Sbjct: 105 IVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVL 150
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 27.3 bits (59), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 31 LIVGENGCGKTTIIECIK 48
L +G + GKTT++ +K
Sbjct: 4 LFLGLDNAGKTTLLHMLK 21
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 27.7 bits (60), Expect = 8.9
Identities = 22/178 (12%), Positives = 51/178 (28%), Gaps = 20/178 (11%)
Query: 31 LIVGENGCGKTTIIECI---KFALTNEYPQGASSGKNFVHDPRIGKKDEASASSGKNFVH 87
+IVG+ CGKT ++ +F + + D + + + +++
Sbjct: 6 VIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR 65
Query: 88 DPRIGKKDETHAIVKLQCTCENNDTVCVVRSLLLSNKNGKDNCATR-----DTTISRKIF 142
+ D ++ ++ + + D
Sbjct: 66 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTR 125
Query: 143 ATGVQKNLGCLQQESVLEMCNLIGVSKAILNNVIFCHQENSSWPLDEGKKVKEIFDEI 200
+ ++ E +M N IG F + E S+ V+E+F+
Sbjct: 126 RELAKMKQEPVKPEEGRDMANRIG---------AFGYMECSAK---TKDGVREVFEMA 171
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 27.7 bits (60), Expect = 9.3
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 29 LTLIVGENGCGKTTIIECIKFALTNEY 55
+ ++ G G GK+T++ +K L N+
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQG 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.362
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,167,579
Number of extensions: 247996
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 951
Number of HSP's successfully gapped: 162
Length of query: 1491
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1394
Effective length of database: 1,075,786
Effective search space: 1499645684
Effective search space used: 1499645684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.2 bits)