BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9514
(611 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|350411344|ref|XP_003489316.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Bombus impatiens]
Length = 651
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 268/631 (42%), Positives = 360/631 (57%), Gaps = 141/631 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL--------EELEVEDDGTAKK-KFKKNKQ 55
GV IK+EFI+EDHV++LS +C+ ETDK+K+ E++ + D+ KK K K+
Sbjct: 23 GVCLIKEEFIIEDHVRLLSEKCLTETDKQKVSNNTTNLSEDVSILDEPPTKKLKNDDKKE 82
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTL---EQTCKYGEKCKFVHDKNVFMKSKPEDI 112
L+GQNKAR P F T+ E CP++ D + E+ C +C F+H++ ++K KP+DI
Sbjct: 83 KLRGQNKARPPPFKTQRELNLCPWVADQAVDEPERKCD-NNQCIFLHNRVEYLKIKPDDI 141
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQ 172
+++CY+F G CP G ACR GS HL + G NI+ ++ + E++ + T N LA +++
Sbjct: 142 TDECYIFELTGRCPRGAACRMGSKHLTKEGLNIIDKEKMDEFRKRPPS-TKNHLAKDIQT 200
Query: 173 DLRKHTYNFEKSEKICKENKASK--------------------NENKDTDDCCKNQDSKV 212
LRKH YNF KSE I K N S+ +E+ D D + +DS +
Sbjct: 201 QLRKHKYNFSKSENIVKANGPSRKNIGTKKVKQEPEIEKIKQIDESLDRDKL-EAKDSPI 259
Query: 213 IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
++ IN E K GP+ D D+IK ++SEKKKIDW+ K+ LSPLTTVGNL
Sbjct: 260 LDT--SINESKNKAPETQNTEKKLGPIEDYDLIKCRDSEKKKIDWRNKILLSPLTTVGNL 317
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFRR+CK++GADITC EMA+A +LK + +EWAL+KRHESED+FGVQLCGNNP VLT+C
Sbjct: 318 PFRRICKEYGADITCGEMALAPRILKGAHEEWALVKRHESEDIFGVQLCGNNPGVLTRCA 377
Query: 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
QLL E++ +DF+D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 378 QLLNEEIDIDFIDLNLGCPIDLIYRQGGGSGMLNRLNVL--------------------- 416
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
+++SV N+V ++P+TVKTRTG++ D
Sbjct: 417 ------------------------------ETVVKSV----NQVMNIPLTVKTRTGVYID 442
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
I H MPKFRDWG S+IT+HGR+REQRYTK ADWDYIEKCA+
Sbjct: 443 KPIAHTLMPKFRDWGVSMITVHGRSREQRYTKLADWDYIEKCAK---------------- 486
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
L P P++GNGDILSY+DY
Sbjct: 487 ---------------------------------LADPIPVFGNGDILSYDDYRRVQDAYT 513
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
SI G+ IGRGALIKPWIF EIKEKKL DI +
Sbjct: 514 SIYGITIGRGALIKPWIFTEIKEKKLIDISS 544
>gi|340729664|ref|XP_003403117.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 3-like
[Bombus terrestris]
Length = 651
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/627 (42%), Positives = 360/627 (57%), Gaps = 133/627 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL--------EELEVEDDGTAKK-KFKKNKQ 55
GV IK+EFI+EDHV++LS +C+ ETDK+K+ E++ + D+ KK K K+
Sbjct: 23 GVCLIKEEFIIEDHVRLLSEKCLTETDKQKVSNNTTNLSEDVSISDEPPTKKLKNDDKKE 82
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKY--GEKCKFVHDKNVFMKSKPEDIS 113
L+GQNKAR P F T+ E CP++ D +++ K +C F+H++ ++K KP+DI+
Sbjct: 83 KLRGQNKARPPPFKTQRELNLCPWVADQAVDEPEKKCDNNQCIFLHNRVEYLKIKPDDIT 142
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
++CY+F G CP G ACR GS HL + G NI+ ++ + E++ + T N LA +++
Sbjct: 143 DECYIFELTGRCPRGAACRMGSKHLTKEGLNIINKEKMNEFRKRPPS-TKNHLAKDIQTQ 201
Query: 174 LRKHTYNFEKSEKICKENKAS------KNENKDTD-DCCKNQDSKVIEGREEI-NTPNTD 225
LRKH YNF KSE I K N S KN ++ + + K D + + E+ ++P D
Sbjct: 202 LRKHKYNFSKSENIVKANGPSRKNVGTKNVKQEPEIEKIKQIDESLDRDKLEVKDSPILD 261
Query: 226 DVI-----KVQE----ETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
I K E E K GP+ D D+IK ++ EKK I+W+ K+ LSPLTTVGNLPFRR
Sbjct: 262 TSINESKNKASETQNTEKKLGPIEDYDLIKCRDPEKKXINWKNKILLSPLTTVGNLPFRR 321
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
+CK++GADITC EMA+A +LK + +EWAL+KRHESED+FGVQLCGNNP VLT+C QLL
Sbjct: 322 ICKEYGADITCGEMALAPRILKGAHEEWALVKRHESEDIFGVQLCGNNPGVLTRCAQLLN 381
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
E++ +DF+D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 382 EEIDIDFIDLNLGCPIDLIYRQGGGSGMLNRLNVL------------------------- 416
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
+++SV MN +P+TVKTRTG++ D I
Sbjct: 417 --------------------------ETVVKSVSQVMN----IPLTVKTRTGVYIDKPIA 446
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H MPKFRDWG S+IT+HGR+REQRYTK ADWDYIEKCA+
Sbjct: 447 HTLMPKFRDWGVSMITVHGRSREQRYTKLADWDYIEKCAE-------------------- 486
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
L P P++GNGDILSY+DY SI G
Sbjct: 487 -----------------------------LADPIPVFGNGDILSYDDYQRVRDAYTSIYG 517
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ IGRGALIKPWIF EIKEKKL DI +
Sbjct: 518 ITIGRGALIKPWIFTEIKEKKLIDISS 544
>gi|380017191|ref|XP_003692544.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Apis
florea]
Length = 642
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 270/625 (43%), Positives = 357/625 (57%), Gaps = 138/625 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL--EELEVEDDGT-----AKKKFKKN--KQ 55
GV IK+EFI+EDH+++LS +C+ ETDK+K+ + DD + KKFK + K+
Sbjct: 23 GVCLIKEEFIIEDHIRLLSEKCLTETDKQKVLNNTTNINDDTSLLDEPPTKKFKNDDKKE 82
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKY--GEKCKFVHDKNVFMKSKPEDIS 113
LKGQNKAR P F T+ E CP++ D +++ K ++C F+HD+ ++K KP+DIS
Sbjct: 83 KLKGQNKARPPPFKTQRELNLCPWIADQAVDEPEKKCDNKRCIFLHDRIEYLKIKPDDIS 142
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
++C++F G C G CR GS HL ++G NI+ ++ KE+K + T N L +++
Sbjct: 143 DECHLFELSGRCLWGTTCRMGSKHLTKDGLNIIDKEKEKEFKKRLPF-TKNHLNKDIQIL 201
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDD------- 226
LRKH YNF K+EKI K N+ SK + + K IEG N N D
Sbjct: 202 LRKHKYNFYKAEKIVKTNEHSKKK-------LGTESVKQIEGSSNKNKLNIKDNLILNVS 254
Query: 227 -------VIKVQE-ETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
+ K Q E + GP+ D D+IK +NSEKK IDW+ K++LSPLTTVGNLPFRR+C
Sbjct: 255 TNETKNEISKSQNIEKRIGPIEDYDLIKCRNSEKKTIDWKNKIFLSPLTTVGNLPFRRIC 314
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K++GADITC EMA+A +LK + +EWAL+KRHESED+FG+QLCGNNP VLT+C QLL EQ
Sbjct: 315 KEYGADITCGEMALAPRILKGAHEEWALVKRHESEDIFGIQLCGNNPGVLTRCAQLLNEQ 374
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
+ VDF+D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 375 IDVDFIDLNLGCPIDLIYRQGGGSGMLNRLNVL--------------------------- 407
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+++S+ MN +P+TVKTRTG++ D I H
Sbjct: 408 ------------------------ETVVKSLNQVMN----IPLTVKTRTGVYIDKPIAHT 439
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
MPKFRDWG S+IT+HGR+REQRYTK ADWDYIEKCA
Sbjct: 440 LMPKFRDWGVSMITVHGRSREQRYTKLADWDYIEKCA----------------------- 476
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
++ P P+YGNGDILS++DY SI GV
Sbjct: 477 --------------------------KIAHPIPVYGNGDILSFDDYQRIQDTYSSIYGVT 510
Query: 579 IGRGALIKPWIFQEIKEKKLFDIYA 603
IGRGALIKPWIF EIKEKKL DI +
Sbjct: 511 IGRGALIKPWIFTEIKEKKLIDISS 535
>gi|307203528|gb|EFN82561.1| tRNA-dihydrouridine synthase 3-like [Harpegnathos saltator]
Length = 660
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 255/635 (40%), Positives = 359/635 (56%), Gaps = 143/635 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL-EELEVED------DGTAKKKFKKN--KQ 55
GV IK+EFI+EDHV+ LS EC+ E DK+K+ VED D + KKFK++ K+
Sbjct: 22 GVCLIKEEFIIEDHVRQLSEECLTEIDKQKVFSGTNVEDPDVPSSDEPSAKKFKQDDKKE 81
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCK--YGEKCKFVHDKNVFMKSKPEDIS 113
L+GQNKAR P F E CP++ D T ++ + ++C F+H++ ++K +P DI
Sbjct: 82 KLRGQNKARPPPFKASRELSLCPWIADQTADEPERKCVNQRCMFLHNREEYLKIRPADIG 141
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C++F G CP G CR GS HL ++G NIV E L+E+K T+N L+ +++ +
Sbjct: 142 IECHIFNITGKCPRGTTCRIGSQHLTKDGFNIVDEKRLEEYKKH-SPSTMNHLSKDLQNN 200
Query: 174 LRKHTYNFEKSEKICKENKASKNE--------------NKDTDDC-CKNQDSKVIEGREE 218
LRKH YNF ++E I K N S+ + NK+T +N+ + E
Sbjct: 201 LRKHKYNFARAEAIVKANDPSRKKMQSQCSKSNETNISNKETRGTEAENKPGPKVAAAES 260
Query: 219 INTPNTDDVIKVQ------------EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPL 266
NT + + +K + + ++ GPV D+D+IK++ SEK+KIDW+ K+ LSPL
Sbjct: 261 ANTADDSNCVKAENNLSEHNISLESKRSRIGPVDDSDVIKLRQSEKRKIDWRNKILLSPL 320
Query: 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY 326
TTVGNLPFRR+CK++GADITC EMA+A ++LK + +EWAL+KRHE ED+FGVQLCGNNP
Sbjct: 321 TTVGNLPFRRICKEYGADITCGEMALAPKILKGTQEEWALVKRHECEDVFGVQLCGNNPG 380
Query: 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
VLT+C QLL ++ VD++D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 381 VLTRCAQLLNREIDVDYIDLNLGCPIDLIYRQGGGSGMLNRLNVL--------------- 425
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
+++SV ++V +P+++KTR
Sbjct: 426 ------------------------------------ETVVKSV----SQVLDIPLSIKTR 445
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
TG++ D I HN MPKF +WG S+IT+HGR+REQRYTK ADW+YIEKCA
Sbjct: 446 TGVYIDKPIAHNLMPKFHEWGVSMITVHGRSREQRYTKLADWEYIEKCA----------- 494
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
SP P++GNGDILS++DY
Sbjct: 495 --------------------------------------VAASPVPVFGNGDILSFDDYQR 516
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ ++ G+ IGRGALIKPWIF EIKE+KL DI
Sbjct: 517 MKETYSTVQGITIGRGALIKPWIFTEIKERKLIDI 551
>gi|328778500|ref|XP_393458.4| PREDICTED: tRNA-dihydrouridine synthase 3-like [Apis mellifera]
Length = 642
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 268/625 (42%), Positives = 358/625 (57%), Gaps = 138/625 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL--EELEVEDDGT-----AKKKFKKN--KQ 55
GV IK+EFI+EDH+++LS +C+ ETDK+K+ + DD + KKFK + K+
Sbjct: 23 GVCLIKEEFIIEDHIRLLSEKCLTETDKQKVLNNTTNINDDTSLLDEPPTKKFKNDDKKE 82
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKY--GEKCKFVHDKNVFMKSKPEDIS 113
L+GQNKAR P F T+ E CP++ D +++ K ++C F+HD+ ++K KP+DIS
Sbjct: 83 KLRGQNKARPPPFKTQRELNLCPWIADQAVDEPEKKCDNKRCIFLHDRIEYLKIKPDDIS 142
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
++C++F G C G CR GS HL ++G NI+ ++ KE+K + T N L ++
Sbjct: 143 DECHLFELSGRCLWGTTCRMGSKHLTKDGLNIIDKEKEKEFKKKLPF-TKNHLNKNIQIL 201
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ-- 231
LRKH YNF K+EKI K N+ + ++ + K IEG N N D + +
Sbjct: 202 LRKHKYNFYKAEKIVKINEHFRKKSG-------TESVKQIEGSSNKNKLNMKDNVMLSVS 254
Query: 232 -------------EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
E + GP+ D D+IK +NSEKK IDW+ K++LSPLTTVGNLPFRR+C
Sbjct: 255 INETKNEIFKNQNTEKRIGPIEDYDLIKCRNSEKKTIDWKNKIFLSPLTTVGNLPFRRIC 314
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K++GADITC EMA+A +LK + +EWAL+KRHESED+FG+QLCGNNP VLT+C QLL EQ
Sbjct: 315 KEYGADITCGEMALAPRILKGAHEEWALVKRHESEDIFGIQLCGNNPGVLTRCAQLLNEQ 374
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
+ VDF+D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 375 IDVDFIDLNLGCPIDLIYRQGGGSGMLNRLNVL--------------------------- 407
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+++SV N+V ++P+TVKTRTG++ D I H
Sbjct: 408 ------------------------ETVVKSV----NQVMNIPLTVKTRTGVYIDKPIAHT 439
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
MPKFRDWG S+IT+HGR+REQRYTK ADWDYIEKCA+
Sbjct: 440 LMPKFRDWGVSMITVHGRSREQRYTKLADWDYIEKCAK---------------------- 477
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
T H P P+YGNGDILS++DY SI GV
Sbjct: 478 --TAH-------------------------PIPVYGNGDILSFDDYQRVQDTYNSIYGVT 510
Query: 579 IGRGALIKPWIFQEIKEKKLFDIYA 603
IGRGALIKPWIF EIKEKKL DI +
Sbjct: 511 IGRGALIKPWIFTEIKEKKLIDISS 535
>gi|332028941|gb|EGI68959.1| tRNA-dihydrouridine synthase 3-like protein [Acromyrmex echinatior]
Length = 665
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 254/633 (40%), Positives = 352/633 (55%), Gaps = 142/633 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLE-ELEVEDDGTA-------KKKFKKNKQV 56
GV IK+EFI+EDHV+ LS +C+ + DK+K+ + +VED + K K + ++
Sbjct: 22 GVCLIKEEFIIEDHVRQLSDQCLTKIDKQKVSTDADVEDTDASWDQVPAKKAKLEDKREK 81
Query: 57 LKGQNKARGPTFVTKPEDCYCPFLKDSTL---EQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
L+GQNKAR P F E CP++ D T E+ C ++C F+HD+ ++K +PEDI
Sbjct: 82 LRGQNKARPPPFKVSKELSLCPWIADQTANESERKCS-NQRCTFLHDRKEYLKIRPEDIG 140
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+CY+F G CP G CR GS HL E+G N++ + L+E+ + N L+ +++
Sbjct: 141 TECYIFNLTGKCPRGTTCRMGSGHLTEDGFNVIDKKKLEEY-SKCPPAVKNHLSKDLQNK 199
Query: 174 LRKHTYNFEKSEKICKENKAS-----------KNENKD----------TDDCCKNQDSKV 212
LRKH YNF ++E I K N S K E+K+ +D+ + +K
Sbjct: 200 LRKHKYNFSRAEAIVKANGPSMKKTQLQSLNSKGEDKNDTKSDVTINISDNSNSEKVAKH 259
Query: 213 IEGREEINTPNTD----DVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTT 268
I + TD + +E K GPV D+D+I+++ SEKK IDW GK+ LSPLTT
Sbjct: 260 ISDNANVEKMETDASNYSITCKSKELKIGPVDDSDLIRLRQSEKKTIDWNGKILLSPLTT 319
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328
VGNLPFRR+CK++GADITC EMA+A +LK + +EWAL+KRHESED+FGVQLCGNNP VL
Sbjct: 320 VGNLPFRRICKEYGADITCGEMALAPNILKGTQEEWALVKRHESEDIFGVQLCGNNPGVL 379
Query: 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQ 388
+C QLL ++ D++D+NLGCPI+ IYK G GSG+L R N+
Sbjct: 380 ARCAQLLNHEIDADYIDLNLGCPIDMIYKNGGGSGMLNRLNVL----------------- 422
Query: 389 LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448
+++SV ++V +P++VKTRTG
Sbjct: 423 ----------------------------------ETVIKSV----SQVLDIPLSVKTRTG 444
Query: 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNF 508
++ D I HN MP+FRDWG S+IT+HGR+REQRYTK ADW+YIEKCA
Sbjct: 445 VYIDKPIAHNLMPRFRDWGVSMITVHGRSREQRYTKLADWEYIEKCAM------------ 492
Query: 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
AQ P P++GNGDILS++DY +
Sbjct: 493 ----------------------------------AAQ---PIPVFGNGDILSFDDYRRAK 515
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ ++ G+ IGRGALIKPWIF EIKE+KL DI
Sbjct: 516 ETYSTVQGITIGRGALIKPWIFTEIKERKLIDI 548
>gi|383851178|ref|XP_003701116.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Megachile rotundata]
Length = 640
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 260/624 (41%), Positives = 347/624 (55%), Gaps = 138/624 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAK-------KKFKKN--KQ 55
GV IK+++I+ DH ++LS EC+ +TDK K+ D A KK K + ++
Sbjct: 23 GVCLIKEDYIIGDHKRLLSEECLTKTDKEKVSPNTTNTDEDASVLHEPPLKKLKSDDKRE 82
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTL---EQTCKYGEKCKFVHDKNVFMKSKPEDI 112
L+GQNKAR P F + E CP++ D + E+ C ++C F+HD+ ++K KP DI
Sbjct: 83 KLRGQNKARPPPFKAQRELNLCPWIADQAVGEPEKKCD-NKRCTFLHDRFEYLKIKPSDI 141
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQ 172
++C++F G C G ACR GS HL E+G NIV + +E T N L +++
Sbjct: 142 RDECFLFNVTGRCLRGTACRMGSKHLTEDGLNIV-DKEKEEEFKKKPPSTKNHLTKQIQT 200
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTDDCCK-------------NQDSKVIEGREEI 219
LRKH Y+F K+EKI K N+ S+ + + + K N +E ++I
Sbjct: 201 QLRKHKYDFSKAEKIVKANEPSRKKLEKVEQIQKLSEEIKPEITNDSNSHISAVECNDKI 260
Query: 220 NTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCK 279
P TD+ I+ K GPV D D+IK +NSEKKKIDW+ K+ LSPLTTVGNLPFRR+CK
Sbjct: 261 --PETDNTIQ-----KIGPVEDYDLIKCRNSEKKKIDWKNKILLSPLTTVGNLPFRRICK 313
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM 339
++GADITC EMA+A +LK + EWAL+KRHESED+FGVQLCGNNP VLT+C QLL +++
Sbjct: 314 EYGADITCGEMALAPRILKGAHDEWALVKRHESEDIFGVQLCGNNPGVLTRCAQLLNQEI 373
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
+DF+D+NLGCPI+ IY+QG GSG+L R N+
Sbjct: 374 DIDFIDLNLGCPIDLIYRQGGGSGMLNRLNVL---------------------------- 405
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
+++SV MN +P+T+KTRTG++ D I HN
Sbjct: 406 -----------------------ETVVKSVNLVMN----IPLTIKTRTGVYIDKPIAHNL 438
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
MPKF +WG S+IT+HGR+REQRYTK ADWDYIEKCA
Sbjct: 439 MPKFNEWGVSMITVHGRSREQRYTKLADWDYIEKCA------------------------ 474
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
K AQ P ++GNGDILSY+DY +I GV I
Sbjct: 475 ----------------------KAAQ---PVSVFGNGDILSYDDYKRVQDTYKTICGVTI 509
Query: 580 GRGALIKPWIFQEIKEKKLFDIYA 603
GRGALIKPWIF EIKE+KL DI +
Sbjct: 510 GRGALIKPWIFTEIKERKLIDISS 533
>gi|307171073|gb|EFN63116.1| tRNA-dihydrouridine synthase 3-like [Camponotus floridanus]
Length = 592
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 247/609 (40%), Positives = 356/609 (58%), Gaps = 122/609 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED------DGTAKKKFKKNKQVLK 58
GV IK+EF++EDH++ L+ + + E DK K+ + ED D T KKFK + + K
Sbjct: 21 GVCLIKKEFVIEDHLRQLNEQHLTEIDKEKIS-VSTEDADTSALDETPVKKFKLDDKKEK 79
Query: 59 --GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCK--YGEKCKFVHDKNVFMKSKPEDISE 114
GQNKAR F E CP++ D T+++ K ++C F+H++ ++K +P+DI+
Sbjct: 80 LKGQNKARPVPFKISRELHLCPWIADQTVDEPEKKCLNQRCTFLHNRKEYLKIRPKDIAT 139
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C++F G CP GI CR G H+ E+G NI+ E+ +E+ N N L+ +++ L
Sbjct: 140 ECHLFNLTGRCPRGITCRMGLRHITEDGFNIIDEEKFEEYINR-PPAIKNHLSKDLQNKL 198
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK ++F K+E I K N SKN+ + + D++ IE + + N N+D+ +E
Sbjct: 199 RKRNFDFSKTEAIVKVNDPSKNKTQ-----LYSSDNE-IEDKIQTNNFNSDNSHNDMKEL 252
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
K GPV D+D+IK++ +EKK++DW GK+ LSPLTTVGNLPFRR+CK++GADITC EMA+A
Sbjct: 253 KLGPVDDSDLIKLRQTEKKRLDWNGKILLSPLTTVGNLPFRRICKEYGADITCGEMALAP 312
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
++LK++ +EWAL+KRHESED+FGVQLCGNNP VLT+C QLL +++ VDF+D+NLGCPI+
Sbjct: 313 KILKAAQEEWALVKRHESEDIFGVQLCGNNPGVLTRCAQLLNQEIDVDFIDLNLGCPIDL 372
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
IY++G GSG+L R ++ V+ +Q+L+
Sbjct: 373 IYRKGGGSGMLNRLHVL--------ESVVKSISQVLD----------------------- 401
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
+P+TVKTRTG++ D I H MP+FRDWGAS+IT+H
Sbjct: 402 ------------------------IPLTVKTRTGVYIDKPIAHKLMPRFRDWGASMITVH 437
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK A+W+YIEKCA
Sbjct: 438 GRSREQRYTKLANWEYIEKCAL-------------------------------------- 459
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
AQ P P++GNGD+LS++DY K ++ G+ IGRGALIKPWIF EIK
Sbjct: 460 --------AAQ---PIPVFGNGDVLSFDDYQRMKKICGTVQGITIGRGALIKPWIFTEIK 508
Query: 595 EKKLFDIYA 603
E++L DI +
Sbjct: 509 ERRLIDISS 517
>gi|193636409|ref|XP_001949454.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Acyrthosiphon
pisum]
Length = 578
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 232/598 (38%), Positives = 331/598 (55%), Gaps = 162/598 (27%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK+E+I+E HV L+I C++E+DK +L E D KK K +K VLKGQNK+R
Sbjct: 33 GIACIKKEYIIERHVPKLAINCISESDKNQLNE-----DEPPSKKQKCSKSVLKGQNKSR 87
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGY 124
T+ P++ C L D + + +C Y +KCKF+H+ ++ KP+DI + CYV+ G
Sbjct: 88 NSTYYQIPQEHLCSNLVDGSEKDSCVY-DKCKFLHNVTEYLDKKPDDIDKTCYVYSIKGR 146
Query: 125 CPMGIACRFGSSHLDENGGNIVKEDVLKEW-KNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP G+ CR+GSSH+ E+G NI+ + + W KN +T L+ E LRK YNF K
Sbjct: 147 CPRGLTCRYGSSHI-ESGKNIIDQTKYEMWIKNETNCRT---LSKENMLKLRKKLYNFTK 202
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
SE+ K+ ++NKD GP+++
Sbjct: 203 SEEAVKK----IDKNKDL-----------------------------------GPLIE-- 221
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
KKI+W+ KLYL+PLTTVGNLPFRR+CK++GADITCSEM +++ LL+ QE
Sbjct: 222 ------ESPKKINWKNKLYLAPLTTVGNLPFRRICKEFGADITCSEMVLSSSLLQGHNQE 275
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
WAL KRHE+ED+FG+Q+CGNNPY+L K Q+L+E + +DF+D+NLGCP++ IYKQG+GSG
Sbjct: 276 WALTKRHETEDIFGIQVCGNNPYMLAKSAQVLQENVDMDFLDLNLGCPLDQIYKQGAGSG 335
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
LL R+ +++C
Sbjct: 336 LLLRSK--KLEVC----------------------------------------------- 346
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
L+S+ T ++ +P+TVKTR+G++KD N+ H+ +P F+D G SLIT+HGR+R+QRYT
Sbjct: 347 --LKSMRTVLD----VPLTVKTRSGVNKDQNVAHDLIPMFKDSGVSLITVHGRSRDQRYT 400
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K ADW+Y+ +CA+L
Sbjct: 401 KMADWNYVNECAKL---------------------------------------------- 414
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP ++ +GDI+SYEDY +S + P I+G MIGRGALIKPWIF+E+KE +DI
Sbjct: 415 ---ASPVQVFSSGDIMSYEDYVDSKLQFPDITGAMIGRGALIKPWIFKELKENCHWDI 469
>gi|357605297|gb|EHJ64545.1| putative dihydrouridine synthase 3-like protein [Danaus plexippus]
Length = 588
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 231/604 (38%), Positives = 324/604 (53%), Gaps = 135/604 (22%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
SGV IK+E++++ K+++ + VN+ + +E E + T K + ++ KGQNKA
Sbjct: 6 SGVCDIKKEYVLKKEEKIVNDDGVNKRKISESDEFEAKKTKTDNNKEEASRCKRKGQNKA 65
Query: 64 RGPTFVTKPEDCYCPFLKDSTLE---QTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R TF ++ CP + + + + C++ CK++H+ ++KSK D+ C+++
Sbjct: 66 RPKTFQDDKQNKPCPSIVNLISKDELKPCQFNN-CKYIHNPLDYIKSKLPDLGNDCHLYN 124
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
G CP GI+CR+GSSH+ + G N+V E+ +WK T N L + ++ L+K Y+
Sbjct: 125 TRGRCPRGISCRYGSSHITDEGFNMVDEEKASKWKED----TKNTLQHSIQILLQKRKYD 180
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ---EETKSG 237
F SE + K S I +++IN P+ D + + + K G
Sbjct: 181 FSLSENLVK--------------------SLDIRKKKQINNPSNDSINSEELNEDNHKIG 220
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
PVLD DI+K+ E+KKI+W KLYLSPLTTVGNLPFRR+CK++GADITC EMA+ LL
Sbjct: 221 PVLDEDIVKLLPRERKKINWTDKLYLSPLTTVGNLPFRRICKEYGADITCGEMALCESLL 280
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
K QEWAL+KRHESEDLFG Q+CGNN Y + K +QLL+E +DF+D+NLGCPI+ +YK
Sbjct: 281 KGMKQEWALVKRHESEDLFGAQICGNNAYAIGKVSQLLKENTELDFIDLNLGCPIDLVYK 340
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
+G GSG++ R + + +Q+L+ I F K +G
Sbjct: 341 KGGGSGMMHRIPALELS--------VKSASQILD---------------IPFTIKMRTG- 376
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
+++D I H +PK DWGASLITLHGR+
Sbjct: 377 -------------------------------VYQDKKIAHTIIPKVVDWGASLITLHGRS 405
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
RE RYT+ ADW+YIE CA
Sbjct: 406 REARYTRLADWEYIEVCA------------------------------------------ 423
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
+ SP P+YGNGDILSYEDY S K +P+I GVMIGRGALIKPWIF EIKE+K
Sbjct: 424 -------KAASPCPVYGNGDILSYEDYVNSRKTAPNIQGVMIGRGALIKPWIFNEIKEQK 476
Query: 598 LFDI 601
L+DI
Sbjct: 477 LYDI 480
>gi|345497475|ref|XP_001600195.2| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 3-like
[Nasonia vitripennis]
Length = 573
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 234/593 (39%), Positives = 317/593 (53%), Gaps = 125/593 (21%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT------AKKKFKKNKQVL 57
SGV +K E+I+ED V+ S E + E+ E + D KK + K
Sbjct: 23 SGVCLVKPEYIIEDSVR--SNENGTNGKGKDTEKTETDADAAEDGEPPKKKFKENKKDKP 80
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCK--YGEKCKFVHDKNVFMKSKPEDISEQ 115
+GQNK R F T+ E CP++ D T+E+ K C F+HD+ ++K KP+DI +
Sbjct: 81 RGQNKGRSVPFKTQREHNLCPWIADLTVEEVEKKCSNNNCHFIHDRAEYLKIKPDDIGTE 140
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
CYVF G CP G ACR GS H +G NI+ ++ + + + T N ++ E+ + L+
Sbjct: 141 CYVFELTGKCPRGAACRMGSKHTTPDGFNIIDKEKFEAY-TKLPPSTKNQISRELSEKLK 199
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQE--- 232
K+ YNF K+EKI K++ + +N + +++ + E TP D ++ E
Sbjct: 200 KYKYNFAKAEKIAKKHNWVRKKNX-------FETTQIPDKSETPQTPEKSDTLQTPEKPK 252
Query: 233 ETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
E K GP+LDTD IK+ EKKKIDW+ K+ L+PLTTVGNLPFRR+CK++GADITC EMA+
Sbjct: 253 EEKVGPILDTDEIKLHPDEKKKIDWKDKIMLAPLTTVGNLPFRRICKEFGADITCGEMAL 312
Query: 293 ATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPI 352
A LLK +EWAL+KRHESEDLFGVQ+ GNNP VLT+C QLL ++ VDFVD+N+GCPI
Sbjct: 313 APRLLKGVREEWALVKRHESEDLFGVQIAGNNPGVLTRCCQLLNDETEVDFVDLNVGCPI 372
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ +YKQG G G+L R N+ V+ T++L+
Sbjct: 373 DLVYKQGGGCGMLNRLNILES--------VVKSATEVLD--------------------- 403
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472
+P TVKTRTG++ D I H M KF+DWGAS+I
Sbjct: 404 --------------------------IPFTVKTRTGVYADKPIAHKLMSKFKDWGASMIN 437
Query: 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532
+HGR+REQRYTK ADWDYIEKCAQ+
Sbjct: 438 IHGRSREQRYTKLADWDYIEKCAQV----------------------------------- 462
Query: 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
SP P+YG GDILS++DY K P++ GV I RGALI
Sbjct: 463 --------------ASPIPVYGTGDILSWDDYQRVRKTYPTVQGVSIARGALI 501
>gi|194760465|ref|XP_001962460.1| GF14432 [Drosophila ananassae]
gi|190616157|gb|EDV31681.1| GF14432 [Drosophila ananassae]
Length = 606
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 224/604 (37%), Positives = 318/604 (52%), Gaps = 120/604 (19%)
Query: 5 GVAKIKQEFIVED--HVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
G+ IK E+IV + K ++ E++KRK E+ + + G KK KK ++ +GQNK
Sbjct: 4 GICYIKPEYIVAEVNAGKEVTAPDNGESNKRKHEDGDSNESGDRKKWNKKERK--RGQNK 61
Query: 63 ARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQH 122
R P F + C L D + C E C++VH+ + ++ +K ED+ +CYVF
Sbjct: 62 NR-PVFKDERYSHLCHSLMDGRGGEPCTL-ENCRYVHELDDYLAAKGEDLGPECYVFTTK 119
Query: 123 GYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFE 182
GYC G++CRF +H D+ G NI KE + T N ++++++ LRKH Y+F
Sbjct: 120 GYCARGVSCRFAKAHTDDKGRNIKKEG----YDEISSQTTFNGISSDLQVRLRKHDYDFS 175
Query: 183 KSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE-------EINTPNTDDVIKVQEETK 235
+++++ K+ + ++E K K++ EG+E + P ++D V
Sbjct: 176 RTKELIKQAEKLRDERKQQIQSDKDKQEVPGEGKESGEESQDKNKLPESNDEPSVANNNP 235
Query: 236 SGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
+G V+D + K +D++ KL LSPLTTVGNLPFRR+CK++GADITC EMA A
Sbjct: 236 TGCVIDDSPSGRDATRKPAVDFREKLVLSPLTTVGNLPFRRICKEFGADITCGEMACALP 295
Query: 296 LLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFI 355
LLK QEWAL KRH+SED+FGVQLCGNNP +++ QL+EE VD++D+N+GCPI+ I
Sbjct: 296 LLKGMGQEWALTKRHQSEDVFGVQLCGNNPNTISQAAQLIEETAKVDYIDLNIGCPIDLI 355
Query: 356 YKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS 415
Y+QG GS L++R N+ + + C+ L E
Sbjct: 356 YQQGGGSALMRRTNILEL--------TVRSCSALSER----------------------- 384
Query: 416 GSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475
LP TVK RTGI+ D ++ H +P +WGAS +TLHG
Sbjct: 385 -----------------------LPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHG 421
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
R+REQRYTK A+W+YIE+CA
Sbjct: 422 RSREQRYTKHANWNYIEECAA--------------------------------------- 442
Query: 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
K Q+ P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIKE
Sbjct: 443 ------KAKQM----PVIGNGDILSYEDYLERRTLAPHVSSVMIGRGALIKPWIFQEIKE 492
Query: 596 KKLF 599
+K +
Sbjct: 493 QKAW 496
>gi|321468855|gb|EFX79838.1| hypothetical protein DAPPUDRAFT_304378 [Daphnia pulex]
Length = 663
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 226/609 (37%), Positives = 319/609 (52%), Gaps = 130/609 (21%)
Query: 8 KIKQEFIVEDHVKVLSIECVNETDKRKLE------ELEVEDDGTAKKKFKKNKQVLKGQN 61
+IK+E+++ +VL + ++ D+ ++ E + D K+ K LKGQN
Sbjct: 65 QIKKEYVLSIRERVLCTDLLSAKDRVLIDGADNSKSKENDTDTIVKEDLKLISVKLKGQN 124
Query: 62 KARGPTFVTKPEDCYCPFLKD---STLEQTCKYGEKCKFVHDKNVFMKS-KPEDISEQCY 117
K R P + CP L D + C Y C++ HD +MK KP+ + C
Sbjct: 125 KNRPPPMRFDITERICPSLVDVAEGEEPKVCPYNPTCRYRHDVVEYMKERKPDMLPGGCP 184
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
+ G C GI+C FG H+ G N + + + G++ N L+ ++++ LRK
Sbjct: 185 NYQSSGRCSRGISCLFGDEHVTPEGKNKINPNPTRP-----GSEYFNFLSKDLQKSLRKK 239
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV-IKVQEETKS 236
TYNF+K+E K+N NKD + N+D K E + N + V +KV+ T+
Sbjct: 240 TYNFKKAESFAKKN------NKDQGNS-NNKDKKEKITEENGESINVNAVALKVESNTEK 292
Query: 237 --GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ + DII +K EKKKIDW+GKLYL+PLTTVGNLPFRRLCK GADITC EMA+A
Sbjct: 293 IIGPITNEDIITLKTEEKKKIDWRGKLYLAPLTTVGNLPFRRLCKALGADITCGEMAMAE 352
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
L+ QEWAL+++H+SEDLFGVQ+CG NPY+L KC+QLLEE +DF+D+NLGCPI+
Sbjct: 353 TLVGGGQQEWALVRKHKSEDLFGVQICGANPYILGKCSQLLEENTEIDFIDLNLGCPIDM 412
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
+Y++G+GSGL++R P+E
Sbjct: 413 VYQKGAGSGLMRRKG------------------------------------PLE------ 430
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
S I M+++ +P TVK R G++ D+ H + K RDWG S++T+H
Sbjct: 431 -------------SSIKTMSQLLKIPFTVKMRMGVYTDHPFAHQLVEKCRDWGVSMVTVH 477
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYT+ ADWDYI C K
Sbjct: 478 GRSREQRYTRLADWDYIGNC-------------------------------------VKA 500
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
AD P P++GNGD++SYEDY + +S +GVMI RGALIKPWIF EIK
Sbjct: 501 AD------------PMPIFGNGDLMSYEDYERVVDQS-GAAGVMIARGALIKPWIFTEIK 547
Query: 595 EKKLFDIYA 603
E++ +DI +
Sbjct: 548 ERRHWDISS 556
>gi|345319255|ref|XP_003430119.1| PREDICTED: tRNA-dihydrouridine synthase 3 [Ornithorhynchus
anatinus]
Length = 621
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 216/579 (37%), Positives = 306/579 (52%), Gaps = 118/579 (20%)
Query: 30 TDKRKLEELEVEDDGTAKKKF-KKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDSTL 85
T K KLE+ + E G ++ ++ K+ +GQNK R PT + E+ CP + ++
Sbjct: 87 TKKIKLEDEKEETQGQGAEEVEQQQKRRARGQNKNRPHVKPTHYS--ENKLCPSVIQASA 144
Query: 86 EQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI 145
++ C +GE+C+F+H+ +M +KP D+ ++C +F G C G+ CRF +HL E N+
Sbjct: 145 DK-CFFGERCRFLHNLASYMATKPPDLGDRCVLFDTFGKCIYGVTCRFAGAHLGERQQNL 203
Query: 146 VKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE-NKASKNENKDTDDC 204
V E+ +W++ N L+ E++Q LRK F +SE+ ++ NK S + + D
Sbjct: 204 VDEERAAQWRDR--QLVRNSLSKELQQQLRKKKVLFSRSERYLRQLNKPSAGKGRTPDPG 261
Query: 205 CKNQDSKVI-EGREEIN-TPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLY 262
EG P SGP+ D D+I+++ +EKK++D +GKLY
Sbjct: 262 AGGSAGSGGREGPAPAEEAPTGGGASPSGTVQTSGPLTDEDVIRLRPAEKKELDIRGKLY 321
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH SEDLFGVQL G
Sbjct: 322 LAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHSEDLFGVQLEG 381
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
P +TKC +LL + + VDFVD+N+GCPI+ +YK+G G L+ R+N F
Sbjct: 382 AFPDTMTKCAELLNQTVEVDFVDINVGCPIDLVYKKGGGCALMNRSNKF----------- 430
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
EQ+V MN V +P+T
Sbjct: 431 ---------EQIVRG-----------------------------------MNSVLDVPLT 446
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
VK RTG+ + N+ H +P+ R WG SL+TLHGR+REQRYTK ADW YIE CA++
Sbjct: 447 VKIRTGVQEKANLAHRLLPELRAWGVSLVTLHGRSREQRYTKVADWQYIEHCARV----- 501
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
SP PL+GNGDILSYE
Sbjct: 502 --------------------------------------------ASPMPLFGNGDILSYE 517
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +L+ +SG+MI RGALIKPW+F EIKE++ +DI
Sbjct: 518 DANCALRT--GVSGIMIARGALIKPWLFTEIKEQRHWDI 554
>gi|242013989|ref|XP_002427681.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212512111|gb|EEB14943.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 557
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/597 (39%), Positives = 317/597 (53%), Gaps = 159/597 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK EF+V ++ IE + K KLEE + + G K ++ +NK
Sbjct: 10 GVANIKSEFVVRNN----DIEEI-PAKKPKLEETKKKTKGQFKNRYNQNKLQFNKSESLC 64
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGY 124
G ED P D T+ KCKF+HD +++ KP DI ++CYVF GY
Sbjct: 65 G-CLKDVAEDLQFP---DCTVS-------KCKFLHDVKKYLEIKPPDIGDECYVFSTKGY 113
Query: 125 CPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS 184
CP G+ CRFG +H+ E+G N ++++ + G K++++L
Sbjct: 114 CPRGVTCRFGKNHITEDGKNKKNIEIMENYGKN-GLKSLDIL------------------ 154
Query: 185 EKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
NK +N +T EE N N + I E GP D D+
Sbjct: 155 ------NKLPNFKNLNTFGL----------SNEETNIENDEKFI----EKPLGPCSDDDL 194
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
K+K SEKKKI+W+ KLYLSPLTT+GNLPFRR+CK++GADITCSEMA+AT LL+ EW
Sbjct: 195 CKLKPSEKKKINWKEKLYLSPLTTLGNLPFRRICKEFGADITCSEMAMATSLLQGLKYEW 254
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
ALIKRHESEDLFG+QLCGNNP+V+TKC QLLEE VD++D+NLGCPI+ +Y++G GSGL
Sbjct: 255 ALIKRHESEDLFGIQLCGNNPFVMTKCAQLLEESTNVDYIDINLGCPIDLVYQKGGGSGL 314
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
L+R ++LE +
Sbjct: 315 LRRE-------------------KVLE--------------------------------S 323
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+++S+ M SLP+TVKTRTG++ D N+ H +P F D G SLIT+HGR+REQRYT+
Sbjct: 324 VIKSMSKVM----SLPLTVKTRTGVYADKNVAHRLIPMFVDSGVSLITVHGRSREQRYTR 379
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW+YI +C
Sbjct: 380 TADWNYINECG------------------------------------------------- 390
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ SP P++GNGD+LS+EDY +LK++ ++SGVM+GRGAL KPWIF+EIKE+K +DI
Sbjct: 391 KAASPIPVFGNGDVLSFEDYNRALKENNNVSGVMVGRGALYKPWIFKEIKEQKNWDI 447
>gi|89272495|emb|CAJ83250.1| dihydrouridine synthase 3-like protein [Xenopus (Silurana)
tropicalis]
Length = 639
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/565 (38%), Positives = 298/565 (52%), Gaps = 125/565 (22%)
Query: 39 EVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKF 97
E +D + K+ K+ +GQNK+R ++ E+ CP + + C +G+KCKF
Sbjct: 89 EGQDKPPTSAENKQEKKRARGQNKSRPHMKHSQFEENKLCPSVTQECASK-CFFGDKCKF 147
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
+HD ++ KPEDI CY++ G C G+ CRF SHL +N N++ E+++K+W+
Sbjct: 148 LHDVAKYVSEKPEDIRPNCYLYETFGKCIYGVTCRFAKSHLGDNFKNLINEELMKQWEGQ 207
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
V K N L +++ LRK FEK++K K C K+ DS I+
Sbjct: 208 VLVK--NSLDKSLKEQLRKRKVVFEKTDKYLKL-------------CNKSGDSLKIKS-P 251
Query: 218 EINTPNTDDVI-KVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
+ N V+ K T G V D D++K++ EKK ID++ KLYL+PLTT GNLPFRR
Sbjct: 252 VVKEDNAAQVVQKDSPVTTVGAVTDEDLVKLRPCEKKTIDFRNKLYLAPLTTCGNLPFRR 311
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
LCK++GADITC EMA+ T LL+ P EWAL+KRH SED+FGVQL G P +TKC +LL
Sbjct: 312 LCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLN 371
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ VDFVD+N+GCPI+ +YK+G G GL+ R N F EQ+V
Sbjct: 372 RTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKF--------------------EQIV- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
MN V +P+TVK RTG+ + NI
Sbjct: 411 ----------------------------------KGMNSVLDVPLTVKIRTGVQEKINIA 436
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H +P RDWG SL+TLHGR+REQRYTK ADW+YI +CA +
Sbjct: 437 HKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADI------------------- 477
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
SP PL+GNGDI+SYED +L+ +SG
Sbjct: 478 ------------------------------ASPLPLFGNGDIISYEDANRALQT--GVSG 505
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 506 IMLARGALLKPWLFTEIKEQRHWDI 530
>gi|45361515|ref|NP_989334.1| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Xenopus
(Silurana) tropicalis]
gi|110808214|sp|Q28BT8.2|DUS3L_XENTR RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
gi|39850298|gb|AAH64263.1| dihydrouridine synthase 3-like protein [Xenopus (Silurana)
tropicalis]
Length = 639
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 217/565 (38%), Positives = 298/565 (52%), Gaps = 125/565 (22%)
Query: 39 EVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKF 97
E +D + K+ K+ +GQNK+R ++ E+ CP + + C +G+KCKF
Sbjct: 89 EGQDKPPTSAENKQEKKRARGQNKSRPHMKHSQFEENKLCPSVTQECASK-CFFGDKCKF 147
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
+HD ++ KPEDI CY++ G C G+ CRF SHL +N N++ E+++K+W+
Sbjct: 148 LHDVAKYVSEKPEDIRPNCYLYETFGKCIYGVTCRFAKSHLGDNFKNLINEELMKQWEGQ 207
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
V K N L +++ LRK FEK++K K C K+ DS I+
Sbjct: 208 VLVK--NSLDKSLKEQLRKRKVVFEKTDKYLKL-------------CNKSGDSLKIKS-P 251
Query: 218 EINTPNTDDVI-KVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
+ N V+ K T G V D D++K++ EKK ID++ KLYL+PLTT GNLPFRR
Sbjct: 252 VVKEDNAAQVVQKDSPVTTVGAVTDEDLVKLRPCEKKTIDFRNKLYLAPLTTCGNLPFRR 311
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
LCK++GADITC EMA+ T LL+ P EWAL+KRH SED+FGVQL G P +TKC +LL
Sbjct: 312 LCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLN 371
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ VDFVD+N+GCPI+ +YK+G G GL+ R N F EQ+V
Sbjct: 372 RTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKF--------------------EQIV- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
MN V +P+TVK RTG+ + NI
Sbjct: 411 ----------------------------------KGMNSVLDVPLTVKIRTGVQEKINIA 436
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H +P RDWG SL+TLHGR+REQRYTK ADW+YI +CA +
Sbjct: 437 HKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADI------------------- 477
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
SP PL+GNGDI+SYED +L+ +SG
Sbjct: 478 ------------------------------ASPLPLFGNGDIISYEDANRALQT--GVSG 505
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 506 IMLARGALLKPWLFTEIKEQRHWDI 530
>gi|158299928|ref|XP_319936.4| AGAP009171-PA [Anopheles gambiae str. PEST]
gi|157013754|gb|EAA14958.4| AGAP009171-PA [Anopheles gambiae str. PEST]
Length = 599
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/547 (39%), Positives = 296/547 (54%), Gaps = 119/547 (21%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCK---YGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R F + C L D L + C+F HD + F++ KP+DI
Sbjct: 59 RGQNKSRTVPFKEEDGLRLCKSLLDGNLGEDAAKKCTNANCRFSHDLDKFLQLKPKDIDG 118
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
CY++ GYC G+ CRF +HLDEN NI ED +K L+ +++ L
Sbjct: 119 TCYIYSTKGYCNFGVTCRFAGAHLDENRRNIYPED----FKPDTSMLVSTWLSTDLQHIL 174
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK YNF KS KI NK + + ++ KN+ +K E+ N DD + EE+
Sbjct: 175 RKRKYNFNKSTKIV--NKFDRLQQEE-----KNEKAK---SNEQENGEAKDDAEQKPEES 224
Query: 235 K-SGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
K +G V D D+IK++++E+K+I ++ KLYLSPLTTVGNLPFRR+CK++G DITC EMA A
Sbjct: 225 KPAGAVTDEDVIKLRSAERKRIVFRDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACA 284
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
++ + QEWAL KRH SEDLFGVQLCG+NP ++T Q++ E+ VDF+D+N GCPI+
Sbjct: 285 IPIINGAIQEWALTKRHSSEDLFGVQLCGHNPKLVTYAAQIIAEKADVDFIDLNTGCPID 344
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
I+ QG GS LL+R N+ V ++ C++LL D+ EF
Sbjct: 345 LIFNQGGGSALLRRQNVLKV--------MVQSCSRLL-----ADYGK-------EF---- 380
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
TVKTR GI+ + I H +PKF DWGASLIT+
Sbjct: 381 ----------------------------TVKTRIGIYNNKLIAHEMVPKFEDWGASLITI 412
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGRT+EQRYTK+ADW+Y+++CA T+ Q
Sbjct: 413 HGRTKEQRYTKRADWEYLQQCA------------------------------TQAQ---- 438
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P++GNGDI YEDY K P+I+GVM+GRGALIKPW+FQEI
Sbjct: 439 ---------------SVPVFGNGDIFGYEDYEHIRTKCPNIAGVMVGRGALIKPWVFQEI 483
Query: 594 KEKKLFD 600
KE+K D
Sbjct: 484 KERKTLD 490
>gi|326934323|ref|XP_003213240.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Meleagris
gallopavo]
Length = 667
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/605 (35%), Positives = 311/605 (51%), Gaps = 139/605 (22%)
Query: 25 ECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLK 81
E E + + E + E D +K ++ +GQNK+R P K CP +
Sbjct: 65 ESPGEPEDGEKESRDGEKDPEDGEKEPVERKRARGQNKSRPCMKPNHYEKSR--LCPSVT 122
Query: 82 DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141
E+ C +G +C+F+HD +M +KP D+ C +F G CP GI CRF +HL +
Sbjct: 123 QGCAEK-CYFGPRCRFLHDVGEYMAAKPADLGRSCVLFETFGRCPYGITCRFAKAHLGDG 181
Query: 142 GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS-EKICKENKASKN---- 196
N+V ++ K+W+ + N L+ +++ LRK + F+K+ E +C K N
Sbjct: 182 YQNVVNAELAKQWEGK--SLVRNNLSKDLQHQLRKKKFTFKKADEYLCSLAKPHHNDRKG 239
Query: 197 --------ENKDTDDCCKNQDS--------KVIEGREE----INTPNTDDVIKVQEETKS 236
E ++ DC +D + EG + + +P+ + +
Sbjct: 240 GKAPGHSAEGEEVSDCTTPEDGLGDTSQCPVLPEGGDSKPAPVQSPHPTESKGGCPTKTA 299
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GPV D DI+K+++ EKKK++ QGKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T L
Sbjct: 300 GPVTDEDIVKLRSCEKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNL 359
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ EWAL+KRH +ED+FGVQL G P +TKC +LL + + VDFVD+N+GCPI+ +Y
Sbjct: 360 LQGQSSEWALLKRHHTEDVFGVQLEGAFPDTMTKCAELLNQTIDVDFVDINVGCPIDLVY 419
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K+G G L+ R+N F EQ+V
Sbjct: 420 KKGGGCALMTRSNKF--------------------EQIVRG------------------- 440
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
MN V +P+TVK RTG+ + N+ H +PK R+WGAS++TLHGR
Sbjct: 441 ----------------MNSVLDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLHGR 484
Query: 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536
+REQRYT+ ADWDYI +CA++
Sbjct: 485 SREQRYTRVADWDYIAECAKI--------------------------------------- 505
Query: 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
SP PL+GNGDILSYED ++++ +SG+MI RGALIKPW+F EIKE+
Sbjct: 506 ----------ASPMPLFGNGDILSYEDANQAMQT--GVSGIMIARGALIKPWLFTEIKEQ 553
Query: 597 KLFDI 601
+ +DI
Sbjct: 554 RHWDI 558
>gi|170049778|ref|XP_001870922.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
gi|167871506|gb|EDS34889.1| tRNA-dihydrouridine synthase [Culex quinquefasciatus]
Length = 590
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 218/558 (39%), Positives = 293/558 (52%), Gaps = 136/558 (24%)
Query: 43 DGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKN 102
DG +K++ K+N+ GQNK R F + + C L D E E+C+F HD
Sbjct: 60 DGKSKQQKKRNR----GQNKNRALPFKEQDDVRLCKTLLDGNAELGKCSKERCRFSHDLE 115
Query: 103 VFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKT 162
F++ KP+DI E CY++ GYC G+ CRF +HLDEN N + E + +E KN V
Sbjct: 116 KFVQLKPKDIGETCYIYSLKGYCNFGVTCRFAGAHLDENLNNKIAEGISREDKNLVS--- 172
Query: 163 VNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP 222
L E++ LRK Y+F+KS + + + + E K+ EG
Sbjct: 173 -MCLGFELQNTLRKKKYDFKKSNQYVSKFEQLQKEAKEK-----------AEG------- 213
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWG 282
+E + G D D+IK+++SE+KKI++Q KLYLSPLTTVGNLPFRR+CK++G
Sbjct: 214 ---------QEARIGACSDEDVIKLRSSERKKINFQDKLYLSPLTTVGNLPFRRICKEYG 264
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVD 342
DITC EMA + ++ QEWAL KRH SEDLFGVQ+CG + + +QL+ E VD
Sbjct: 265 VDITCGEMACSVPIINGMMQEWALTKRHPSEDLFGVQICGYSGKLAAYASQLIAENADVD 324
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
FVD+NLGCPIE I+ QG GS LL+R + V ++ C++LL D+
Sbjct: 325 FVDINLGCPIELIFNQGGGSALLRREKVLEV--------LVQSCSRLL-----ADYGK-- 369
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
EF TVKTRTG++ N+ H +PK
Sbjct: 370 -----EF--------------------------------TVKTRTGVYAGKNVAHELVPK 392
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
F +WGASL+T+HGRT+EQRYTK+ADW+YI +CAQ
Sbjct: 393 FEEWGASLVTIHGRTKEQRYTKRADWNYIWQCAQTVKS---------------------- 430
Query: 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582
P+YGNGDI SYEDY E+ K +P ++GVMIGRG
Sbjct: 431 ---------------------------VPIYGNGDIFSYEDYVEAKKCAPELAGVMIGRG 463
Query: 583 ALIKPWIFQEIKEKKLFD 600
AL+KPWIFQEIKE+K D
Sbjct: 464 ALVKPWIFQEIKEQKALD 481
>gi|449284186|gb|EMC90733.1| tRNA-dihydrouridine synthase 3-like protein, partial [Columba
livia]
Length = 598
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 222/589 (37%), Positives = 309/589 (52%), Gaps = 140/589 (23%)
Query: 41 EDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPE-DCYCPFLKDSTLEQTCKYGEKCKFVH 99
E+DG A+K+ + K+ +GQNK+R T+ E + CP + E+ C +G +C+F+H
Sbjct: 13 EEDGAAEKEPAERKRA-RGQNKSRPCMKPTRYEQNRLCPSVTQGCAEK-CYFGARCRFLH 70
Query: 100 DKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVG 159
D + +M +KP D+ C +F G C G+ CRF SHL NIV D+ K+W+
Sbjct: 71 DVSEYMAAKPGDLGHSCVLFQTFGKCVYGVTCRFAQSHLGAGYQNIVNADLAKQWEG--- 127
Query: 160 NKTV--NMLANEVRQDLRKHTYNFEKSEKIC-----------KENKAS--KNENKDTDDC 204
KT+ N L+ +++ LRK +NF+K+++ K KA+ E ++ +C
Sbjct: 128 -KTLVRNNLSKDLQHQLRKKKFNFKKADEYLRGLAKPHGDGGKGGKATGCSAEEQEVPNC 186
Query: 205 CKNQ----DSKVIEGREEINTPNTDDVIKVQEETKS----GPVLDTDIIKIKNSEKKKID 256
Q D R E D + EE S GPV D D+IK++ EKKK++
Sbjct: 187 TTAQEGLEDGPECPVRPEQGEDPKPDTWQSGEEPSSIKTAGPVTDEDLIKLRACEKKKLE 246
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
QGKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH +ED+F
Sbjct: 247 IQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTSLLQGQSSEWALLKRHHTEDIF 306
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLC 376
GVQL G P +TKC +LL + + VDFVD+N+GCPI+ +YK+G G L+ R N F
Sbjct: 307 GVQLEGAFPDTMTKCAELLNQTIEVDFVDINVGCPIDLVYKKGGGCALMTRTNKF----- 361
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
EQ+V MN V
Sbjct: 362 ---------------EQIVRG-----------------------------------MNSV 371
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+P+TVK RTG+ + N+ H +PK R+WGAS++TLHGR+REQRYT+ ADWDYI +CA+
Sbjct: 372 LDVPLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLHGRSREQRYTRGADWDYIAECAR 431
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
+ SP PL+GNG
Sbjct: 432 I-------------------------------------------------ASPMPLFGNG 442
Query: 557 DILSYEDYTESLKKSPSISGVMIGR----GALIKPWIFQEIKEKKLFDI 601
DILSYED +L+ +SG+MI R GALIKPW+F EIKE++ +DI
Sbjct: 443 DILSYEDANRALQM--GVSGIMIARQVLVGALIKPWLFTEIKEQRHWDI 489
>gi|147903417|ref|NP_001079662.1| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Xenopus laevis]
gi|82176436|sp|Q7ZWS1.1|DUS3L_XENLA RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
gi|28436916|gb|AAH46730.1| MGC53781 protein [Xenopus laevis]
Length = 640
Score = 370 bits (949), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 213/552 (38%), Positives = 292/552 (52%), Gaps = 123/552 (22%)
Query: 51 KKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKP 109
K+ K+ +GQNK+R ++ E+ CP + + C +G+KCKF HD ++ KP
Sbjct: 102 KQEKKRARGQNKSRPHMKHSQFEENKLCPSVTQECASK-CFFGDKCKFSHDVAKYVSQKP 160
Query: 110 EDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
EDI C+++ G C G+ CRF SHL E+ NI+ E+++KEW+ V K N L
Sbjct: 161 EDIRPNCHLYETFGKCIYGVTCRFAKSHLGEDFKNIINEELMKEWEGKVLVK--NSLDKS 218
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+++ LRK FEKS+K K S + +K + V++ + D I
Sbjct: 219 LKEQLRKKKVVFEKSDKYLKLCFKSGDSSK--------MKNPVVKEDSAVQVTQKDSPI- 269
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE 289
T G V D D+IK++ EKK ID++ KLYL+PLTT GNLPFRR+CK+ GADITC E
Sbjct: 270 ----TTVGAVTDEDVIKLRPCEKKTIDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGE 325
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MA+ T LL+ P EWAL+KRH SED+FGVQL G P +TKC +LL + VDFVD+N+G
Sbjct: 326 MAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVG 385
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +YK+G G GL+ R N F EQ+V
Sbjct: 386 CPIDLVYKKGGGCGLMNRTNKF--------------------EQIV-------------- 411
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
MN V +P+TVK RTG+ + NI H +P RDWG S
Sbjct: 412 ---------------------KGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVS 450
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
L+TLHGR+REQRYTK A+W+YI++CA++
Sbjct: 451 LVTLHGRSREQRYTKLANWEYIDQCAKI-------------------------------- 478
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
SP PL+GNGDI+SYED +L+ ++GVM+ RGAL KPW+
Sbjct: 479 -----------------ASPVPLFGNGDIISYEDANRALQT--GVAGVMLARGALFKPWL 519
Query: 590 FQEIKEKKLFDI 601
F EIKE++ +DI
Sbjct: 520 FTEIKEQRHWDI 531
>gi|195118882|ref|XP_002003961.1| GI20204 [Drosophila mojavensis]
gi|193914536|gb|EDW13403.1| GI20204 [Drosophila mojavensis]
Length = 614
Score = 368 bits (944), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 229/611 (37%), Positives = 308/611 (50%), Gaps = 138/611 (22%)
Query: 9 IKQEFIVED----HVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
IK E+++ + H ++ ET+KRK E E + K+ K+ +GQNK R
Sbjct: 8 IKPEYLLAEANGAHNWEVNASTDGETNKRKHLENEETTNEPQSKRGSGKKERKRGQNKNR 67
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGY 124
P F + C L D + C C++VHD N F+ +K ED+ EQCYV+ GY
Sbjct: 68 -PVFKDERYSHLCHSLIDGAGGEPCSV-PNCRYVHDLNAFIAAKGEDLGEQCYVYDTKGY 125
Query: 125 CPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS 184
C GI CRF +H DENG N+ + + + T N + +E++ LRKH Y+F +S
Sbjct: 126 CARGITCRFAKAHTDENGRNMKRPN----YDEKAAQTTYNGINSELQVRLRKHDYDFSRS 181
Query: 185 EKICKENKASKNENK-----------DTDDCCKN-------QDSKVIEGREEINTPNTDD 226
+++ K+ + ++E K D D +N QD+ IE +E +T N
Sbjct: 182 KELIKKAEKLRDERKKDHQQQEEEVQDKDKEEQNSGKERQQQDAAPIENKE--STENQSL 239
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADIT 286
K G +D K ID++ KL LSPLTTVGNLPFRR+CK++GADIT
Sbjct: 240 ANK-----PIGSAIDETTNGRDAQRKPVIDFREKLLLSPLTTVGNLPFRRICKEFGADIT 294
Query: 287 CSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDV 346
C EMA A LLK QEWAL KRHESE++FGVQLCGNNP V+++ Q+L E VDF+D+
Sbjct: 295 CGEMACAVPLLKGLGQEWALTKRHESENVFGVQLCGNNPNVISQAAQVLHETSRVDFIDL 354
Query: 347 NLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406
N+GCPI+ IY+QG GS L+ R N+ + + C+ L +
Sbjct: 355 NIGCPIDLIYQQGGGSALMHRTNILEL--------TVRSCSALSDR-------------- 392
Query: 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW 466
LP TVK RTG++ D ++ H +P +W
Sbjct: 393 --------------------------------LPFTVKMRTGVYADKSVAHELLPLVEEW 420
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526
GAS +TLHGR+REQRYT+QA+W YIE+CA
Sbjct: 421 GASAVTLHGRSREQRYTRQANWTYIEECA------------------------------- 449
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
KQA P+ GNGDILSYEDY E +P +S VMIGRGALIK
Sbjct: 450 ------KQAKH------------IPVIGNGDILSYEDYVERRALAPHVSSVMIGRGALIK 491
Query: 587 PWIFQEIKEKK 597
PWIFQEIKE+K
Sbjct: 492 PWIFQEIKEQK 502
>gi|334326545|ref|XP_001376181.2| PREDICTED: tRNA-dihydrouridine synthase 3-like [Monodelphis
domestica]
Length = 667
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 213/582 (36%), Positives = 304/582 (52%), Gaps = 125/582 (21%)
Query: 34 KLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDC-YCPFLKDSTLEQTCKYG 92
++E LE + G + + K+ +GQNK+R T +D CP L + ++ C +G
Sbjct: 88 QVESLESQSSGVGVGEPHQKKKA-RGQNKSRPHMKPTHYDDNRLCPSLVQESADK-CFFG 145
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
E+C+F+HD + ++ SKP D+ ++C +F G C G+ CRF +HL N+VKE+++K
Sbjct: 146 ERCRFLHDVDTYLASKPPDLGDKCVLFETFGKCIYGVTCRFARAHLGPQHQNLVKEELVK 205
Query: 153 EWKNTVGNK-TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTD--------- 202
+W+ G K T N L+ +++ LRK F+ SEK K+ S D
Sbjct: 206 QWE---GQKLTSNGLSKDLQHRLRKKKVQFDHSEKYLKQLSKSGRVGTGKDQIPILPAGP 262
Query: 203 DCCKNQDSKV---IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQG 259
+ K + SK G N+ + SG + D D+IK++ EKK+++ Q
Sbjct: 263 EAPKGEQSKAYIDFPGHMAQNSAKKGTTPQRNIVCSSGHLTDEDLIKLRPCEKKRLNIQN 322
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
KLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH +EDLFGVQ
Sbjct: 323 KLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTEDLFGVQ 382
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G P +TKC +LL + + VDFVD+N+GCPI+ +YK+G G L+ R+N F
Sbjct: 383 LEGAFPDTMTKCAELLNQTVEVDFVDINVGCPIDLVYKKGGGCALMNRSNKF-------- 434
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
EQ+V MN+V +
Sbjct: 435 ------------EQIVRG-----------------------------------MNQVLDV 447
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + N+ H +P+ R+WG +L TLHGR+REQRYTK ADW YI+ CA
Sbjct: 448 PLTVKIRTGVQEKVNLAHRLLPELREWGVALATLHGRSREQRYTKGADWQYIQHCA---- 503
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
++ P PL+GNGDIL
Sbjct: 504 ---------------------------------------------EVAHPMPLFGNGDIL 518
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SYED +L+ +SG+MI RGALIKPW+F EIKE++ +DI
Sbjct: 519 SYEDANRALQT--GVSGIMIARGALIKPWLFTEIKEQRHWDI 558
>gi|363743705|ref|XP_425899.3| PREDICTED: tRNA-dihydrouridine synthase 3-like [Gallus gallus]
Length = 641
Score = 362 bits (930), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 204/576 (35%), Positives = 301/576 (52%), Gaps = 131/576 (22%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDSTL 85
E + R+ E + E + ++K ++ +GQNK+R P K CP +
Sbjct: 85 EPEDREKEPEDREKEPEDREKEPVERKRARGQNKSRPCMKPNHYEKSR--LCPSVTQGC- 141
Query: 86 EQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI 145
E+ C +G +C+F+HD +M +KP D+ C +F G CP G+ CRF +HL + N+
Sbjct: 142 EEKCYFGPRCRFLHDVGEYMAAKPPDLGHSCVLFETFGKCPYGVTCRFAKAHLGDGHQNV 201
Query: 146 VKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCC 205
V ++ K+W+ + N L+ +++ LRK + F+K+++ +
Sbjct: 202 VNTELAKQWEGK--SLVRNSLSKDLQHQLRKKEFTFKKADEYLRM-------------LP 246
Query: 206 KNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSP 265
+ D K + +P+ + +G V D DI+K+++ EKKK++ QGKLYL+P
Sbjct: 247 EGGDPKAAL----VQSPHPTESEGGCPTKTAGTVTDEDIVKLRSCEKKKLEIQGKLYLAP 302
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
LTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH +ED+FGVQL G P
Sbjct: 303 LTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTEDIFGVQLEGAFP 362
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
+TKC +LL + + VDFVD+N+GCPI+ +YK+G G L+ R+N F
Sbjct: 363 DTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKF-------------- 408
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445
EQ+V MN V +P+TVK
Sbjct: 409 ------EQIV-----------------------------------RGMNSVLDVPLTVKI 427
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
RTG+ + N+ H +PK R+WGAS++TLHGR+REQRYT+ ADWDYI +CA++
Sbjct: 428 RTGVQEKMNVAHKIIPKIREWGASMVTLHGRSREQRYTRVADWDYIAECAKI-------- 479
Query: 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565
SP PL+GNGDILSYED
Sbjct: 480 -----------------------------------------ASPMPLFGNGDILSYEDAN 498
Query: 566 ESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++++ +SG+MI RGALIKPW+F EIKE++ +DI
Sbjct: 499 QAMQT--GVSGIMIARGALIKPWLFTEIKEQRHWDI 532
>gi|157115267|ref|XP_001658172.1| tRNA-dihydrouridine synthase [Aedes aegypti]
gi|108883495|gb|EAT47720.1| AAEL001171-PA [Aedes aegypti]
Length = 578
Score = 361 bits (927), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 204/543 (37%), Positives = 290/543 (53%), Gaps = 126/543 (23%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCY 117
+GQNK R F + + C L D L +C+F HD F++ KP+DI E CY
Sbjct: 53 RGQNKNRDLPFKEQDDARLCKTLLDGKLNSEKCSNPRCRFSHDLERFIQLKPKDIGESCY 112
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
++ GYC G+ CRF +HLDE N + E + +E N V L+ +++ LRK
Sbjct: 113 IYSLKGYCNFGVTCRFAGAHLDEESNNKISEGIKREDHNLVSM----CLSFDLQNQLRKK 168
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSG 237
+YN+ K+ KI + + + E+K EE++ +D + + G
Sbjct: 169 SYNYSKANKIISKFERLQKESK-----------------EEVDGLGSDTL----KAKPIG 207
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
D D++K+++ E+KKI+++ KLYLSPLTTVGNLPFRR+CK++G DITC EMA + ++
Sbjct: 208 SCTDEDLVKLRSPERKKINFKDKLYLSPLTTVGNLPFRRICKEYGVDITCGEMACSVPII 267
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
QEWAL KRH SEDLFGVQ+CG+N +++ TQ++ E VDFVD+NLGCPI+ I+
Sbjct: 268 NGMMQEWALTKRHPSEDLFGVQICGHNQKLVSYATQVIAEHADVDFVDLNLGCPIDLIFN 327
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
QG GS LL+R N+ V ++ C+++L D+ EF
Sbjct: 328 QGGGSALLRRRNILEV--------MIQSCSRIL-----ADYDK-------EF-------- 359
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
TVKTR GI+ + + H +PKF +WGASL+T+HGRT
Sbjct: 360 ------------------------TVKTRMGIYANKYVAHELVPKFEEWGASLVTIHGRT 395
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
+EQRYTK+ADWDYI +CAQ QA
Sbjct: 396 KEQRYTKKADWDYIRQCAQ-------------------------------------QA-- 416
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P+YGNGDI Y+DY ++ +++P ++GVM+GRGALIKPW+FQEIKE+K
Sbjct: 417 ----------KSIPIYGNGDIFCYQDYLDAKERAPELAGVMVGRGALIKPWVFQEIKEQK 466
Query: 598 LFD 600
D
Sbjct: 467 NLD 469
>gi|395512873|ref|XP_003760658.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Sarcophilus harrisii]
Length = 679
Score = 358 bits (920), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 210/602 (34%), Positives = 306/602 (50%), Gaps = 142/602 (23%)
Query: 31 DKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDC-YCPFLKDSTLEQTC 89
D K E LE + G + + ++ ++ +GQNK+R T+ +D CP L + E+ C
Sbjct: 80 DDGKAEGLERQSPGEGEGETQQKRKA-RGQNKSRPHMKPTRYDDQRLCPSLIQESAEK-C 137
Query: 90 KYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKED 149
+GE+C+F+HD + ++ SK D+ ++C +F G C G+ CRF +HL N+VKE+
Sbjct: 138 FFGERCRFLHDVDTYLASKLPDLGDKCVLFETFGKCIYGVTCRFAGAHLGPQHQNLVKEE 197
Query: 150 VLKEWKNTVGNK-TVNMLANEVRQDLRKHTYNFEKSEKICKE------------------ 190
++K+W+ G K T N L+ +++ LRK F+ SEK K+
Sbjct: 198 LVKQWE---GQKLTSNGLSKDLQHQLRKKKVQFDLSEKYLKQLSKSGRVGTGKGQTPVPA 254
Query: 191 -----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
+ A + + + + + +S + + TP + SG +
Sbjct: 255 AGPEASLDSLGHMAPNSTSGEAHESLASVESGLPQSETASGTPEQGATPQRSAVCSSGHL 314
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
D D+I+++ EKK+++ Q KLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 315 TDEDLIRLRPCEKKRLNIQHKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQG 374
Query: 300 SPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
EWAL+KRH +EDLFGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 375 QSSEWALLKRHHTEDLFGVQLEGAFPDTMTKCAELLNRTVEVDFVDINVGCPIDLVYKKG 434
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
G L+ R N F EQ+V
Sbjct: 435 GGCALMSRFNKF--------------------EQIV------------------------ 450
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
M++V +P+TVK RTG+ + N+ H +P+ R+WG +L TLHGR+RE
Sbjct: 451 -----------RGMDQVLDVPLTVKIRTGVQEKVNLAHRLLPELREWGVALTTLHGRSRE 499
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
QRYTK ADW YI+ C +
Sbjct: 500 QRYTKGADWTYIQHCVNV------------------------------------------ 517
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
SP PL+GNGDILSYED +L+ +SGVMI RGALIKPW+F EIKE++ +
Sbjct: 518 -------ASPMPLFGNGDILSYEDANRALET--GVSGVMIARGALIKPWLFTEIKEQRHW 568
Query: 600 DI 601
DI
Sbjct: 569 DI 570
>gi|312377328|gb|EFR24184.1| hypothetical protein AND_11402 [Anopheles darlingi]
Length = 633
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 218/621 (35%), Positives = 317/621 (51%), Gaps = 140/621 (22%)
Query: 5 GVAKIKQEFIV---------EDHVKVLSIECVNETDKRKL---EELEVEDDGTAKKKFKK 52
G+ +IK E+++ E+ ++ + E + + + + E G + + KK
Sbjct: 4 GICRIKAEYLIPRTVPEKPAENAEPIVPVAAEQEPENKPVGNDDGPPAEKKGRYESEGKK 63
Query: 53 NKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKC-----KFVHDKNVFMKS 107
K +GQNK R F C L D E+ G+KC ++ HD F++
Sbjct: 64 KKN--RGQNKGRQLPFKEDDSLRLCKSLLDGPQEEGS--GKKCSNPNCRYSHDLGRFLQL 119
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNM-L 166
KP+DI ++CY++ GYC G+ CRF +HLDE NI D K + V+ L
Sbjct: 120 KPKDIGDKCYIYSVKGYCNFGVTCRFAGAHLDEQNRNIYPAD----HKTADDSMLVSTWL 175
Query: 167 ANEVRQDLRKHTYNFEKSEKIC-------KENKASKNENKDTDDCCKNQDSKVIEGREEI 219
+ +++ LRK YNF KS KI +E +A K + + N ++ + E E
Sbjct: 176 STDLQHILRKKKYNFNKSTKIVNKFERLQQEERAEKAKAPTEEPANGNGETTISEAVEIT 235
Query: 220 NTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCK 279
T + + G V D D+I ++++E+K+I+++ KLYLSPLTTVGNLPFRR+CK
Sbjct: 236 GATETPAAVPI------GAVTDEDLIILRSAERKRINFRDKLYLSPLTTVGNLPFRRICK 289
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM 339
++G DITC EMA A ++ + QEWAL KRH SEDLFGVQLCG+ P ++T Q++ E+
Sbjct: 290 EYGVDITCGEMACAIPIINGAIQEWALTKRHASEDLFGVQLCGHKPKLVTYAAQIIAEKA 349
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
VDF+D+N+GCPI+ I+ QG GS LL+R N+ V ++ C++LL D+
Sbjct: 350 DVDFIDLNIGCPIDLIFNQGGGSALLRRQNVLQV--------MVQSCSRLL-----ADYG 396
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
EF TVKTR GI+ + I H
Sbjct: 397 K-------EF--------------------------------TVKTRIGIYNNKPIAHEL 417
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+P+F +WGASLIT+HGRT+EQRYTK ADW+++++CA
Sbjct: 418 VPRFEEWGASLITIHGRTKEQRYTKHADWEFVQRCA------------------------ 453
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
AQ S P+YGNGDI Y DY + ++ P++ GVM+
Sbjct: 454 ------------------------AQ-ASSVPVYGNGDIYCYSDYESARERCPNVGGVMV 488
Query: 580 GRGALIKPWIFQEIKEKKLFD 600
GRGALIKPW+FQEIKE+K D
Sbjct: 489 GRGALIKPWVFQEIKERKNLD 509
>gi|195995959|ref|XP_002107848.1| hypothetical protein TRIADDRAFT_49631 [Trichoplax adhaerens]
gi|190588624|gb|EDV28646.1| hypothetical protein TRIADDRAFT_49631 [Trichoplax adhaerens]
Length = 581
Score = 357 bits (917), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 213/599 (35%), Positives = 302/599 (50%), Gaps = 151/599 (25%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK EF+ + + + + + +E + + K+K +GQNK R
Sbjct: 27 GVAPIKSEFLRCRPPPRTTTDSSAQATELQKDEPQQNNGSNRKRK--------RGQNKKR 78
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGY 124
T + CP L ++ C++G C+F+HD + F++SKP D+ ++C +F +G
Sbjct: 79 PLTTSIEKGKLLCPKL---IADEVCEFGTSCRFLHDVDAFLQSKPPDLGDKCVIFDAYGK 135
Query: 125 CPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS 184
CP G+ACR+GSSH++ N N++ E+ L+ + T N ++ E DLRK F K+
Sbjct: 136 CPYGLACRYGSSHVN-NKKNVIDEERLR------ASATKNCMSKEALSDLRKKKIQFPKA 188
Query: 185 EKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ K A + D EGR I G + D D+
Sbjct: 189 DAYVKAISAMNDMKND-----------AAEGRSTI-----------------GTLTDEDL 220
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
I I+ EKK+I++ KL+L+PLTTVGNLPFRR+CK +GAD+TCSEMA+ T LL+ EW
Sbjct: 221 ITIRPEEKKQINFSNKLFLAPLTTVGNLPFRRICKTFGADVTCSEMALCTNLLQGQQSEW 280
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRHESEDLFG+Q+CG P L + ++ + +++ VDFVD+NLGCPI+ ++ QG+GS L
Sbjct: 281 ALVKRHESEDLFGLQVCGAWPDTLARLSEYINDRVNVDFVDLNLGCPIDLVFHQGAGSAL 340
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ RAN Q +V + L P
Sbjct: 341 MGRANKL---------------------QQIVTGMSSILSVP------------------ 361
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTGI + H +P+ R+WGASL+TLHGR+REQRYTK
Sbjct: 362 ----------------LTVKLRTGILAKKSTAHKLIPQIREWGASLVTLHGRSREQRYTK 405
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YI +CA AD
Sbjct: 406 LADWSYINECAT-------------------------------------AAD-------- 420
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
P PL GNGDILS+EDY E + + +++GVMI RGALIKPW+F EIKE++ +DI A
Sbjct: 421 ----PMPLIGNGDILSFEDYLEHMNNT-NVAGVMIARGALIKPWLFTEIKERRHWDISA 474
>gi|198471850|ref|XP_001355747.2| GA10329 [Drosophila pseudoobscura pseudoobscura]
gi|198139493|gb|EAL32806.2| GA10329 [Drosophila pseudoobscura pseudoobscura]
Length = 615
Score = 357 bits (917), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 219/585 (37%), Positives = 290/585 (49%), Gaps = 123/585 (21%)
Query: 28 NETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQ 87
+ET+KRK + ED + K K +GQNK R P F C L D
Sbjct: 31 SETNKRKRAD-GSEDTEDSGGKKDNKKDRKRGQNKNR-PVFKEDRYSHLCHSLIDGPGGD 88
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK 147
C C++VHD + F+ +K ED+ +CYV+ GYC G+ CR+ +H D+ G NI K
Sbjct: 89 PCSLA-NCRYVHDLDAFLAAKGEDLGSECYVYSTKGYCGRGVTCRYAKAHTDDQGRNIKK 147
Query: 148 EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS-------EKICKENKASKNENKD 200
+D + T N + +++ LRKH YN ++S EKI K + + K
Sbjct: 148 DD----YDAKANQTTFNGITPDLQVRLRKHEYNLDRSKLMIAVAEKIRDARKQRELQEKK 203
Query: 201 TDDCCKN---QDSKVIEGREEINTPNTDDVIKV---QEETKSGPVLDTDIIKIKNSEKKK 254
+ KN Q +G I+ V K E G +D + K
Sbjct: 204 LEVQEKNLELQKKINQQGDITIDHEAEAKVAKAPAADSEASIGSAVDDSPLGRDADRKPA 263
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D++ KL LSPLTTVGNLPFRR+CK+ GADITC EMA A LLK QEWAL KRHESED
Sbjct: 264 VDFREKLVLSPLTTVGNLPFRRICKELGADITCGEMACAVPLLKGLGQEWALTKRHESED 323
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+FGVQLCGNNP V+T+ Q+L+E VD++D+N+GCPI+ IY+QG GS L++R N+ +
Sbjct: 324 IFGVQLCGNNPNVITQAAQVLQETAKVDYIDLNIGCPIDLIYQQGGGSALMRRTNILEL- 382
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
V+ C+ L E+
Sbjct: 383 -------VVRSCSSLSEQ------------------------------------------ 393
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP TVK RTGI+ D ++ H +P +WGAS +TLHGR+REQRYTK A+W+YIE+C
Sbjct: 394 ----LPFTVKMRTGIYADKSVAHELVPLVEEWGASAVTLHGRSREQRYTKHANWEYIEQC 449
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A + P+ G
Sbjct: 450 AATAKK-------------------------------------------------MPIIG 460
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
NGDILSYEDY E SP +S VMIGRGALIKPWIFQEIK++K +
Sbjct: 461 NGDILSYEDYVEKRALSPHVSSVMIGRGALIKPWIFQEIKQQKAW 505
>gi|41056139|ref|NP_956968.1| tRNA-dihydrouridine synthase 3-like [Danio rerio]
gi|34784014|gb|AAH58066.1| Zgc:63779 [Danio rerio]
Length = 660
Score = 355 bits (912), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 221/624 (35%), Positives = 326/624 (52%), Gaps = 166/624 (26%)
Query: 29 ETDKRKLEELEVEDDG-TAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQ 87
E +K+K+ +E++G TA+++ KK K ++GQNK+R KP L S +++
Sbjct: 47 EPEKKKIR---LENEGETAEQEKKKIK--MRGQNKSRPHV---KPHTYEDKRLCTSIIQE 98
Query: 88 ---TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C YGEKC+F+HD + ++ +K D+ +QC++F G CP G+ CR+ +H + N
Sbjct: 99 RDSVCPYGEKCRFLHDVSEYLSTKAADLGDQCHLFNTLGKCPYGLTCRYAKAHTSADLKN 158
Query: 145 IVKEDVLKEWKNTVGNK-TVNMLANEVRQDLRKHTYNFEKSEKICKE-NKASKNENKDTD 202
+V ++ ++ + G + T N+L E+++ LRK F ++ K ++A + E+ +
Sbjct: 159 MVNTEL---YRASAGRENTTNLLDKELQKRLRKKQQRFPGADAFLKSISRAPRPEHNSRE 215
Query: 203 DCCKNQDS--KVIEGREE----------------------INTPNTDDVIK-VQEETKSG 237
K++D K E RE+ I + NT+D + V++ +K+G
Sbjct: 216 QRGKHEDQRQKHEEQREQTDEQSKNTEDQTQTNNQRENANIQSKNTEDQRQSVEDPSKNG 275
Query: 238 ------------------PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCK 279
P+ D DIIK++ EKK++D++ KLYL+PLTT GNLPFRR+CK
Sbjct: 276 SDSANRRETQVPPIKTIGPITDADIIKLRPCEKKQVDFRDKLYLAPLTTCGNLPFRRVCK 335
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM 339
++GADITC EMA+ T LL+ EWAL+KRH SEDLFGVQL G P +T+C +LL + +
Sbjct: 336 RFGADITCGEMAMCTNLLQGQASEWALLKRHASEDLFGVQLEGCFPDTMTRCAELLNQNI 395
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
VDFVD+N GCPI+ +YK+G G GL+ R + F EQ+V
Sbjct: 396 DVDFVDINSGCPIDLVYKKGGGCGLMTRTSKF--------------------EQIV---- 431
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
MN V +P+TVK RTG+ +++NI H
Sbjct: 432 -------------------------------RGMNSVLDVPLTVKIRTGVQQNSNIAHKL 460
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+P+ + WG SLITLHGR+REQRYTK ADWDYI CAQL
Sbjct: 461 IPEMKKWGVSLITLHGRSREQRYTKLADWDYINTCAQL---------------------- 498
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
+P PL+GNGDILSYED ++ + +SG+M+
Sbjct: 499 ---------------------------AAPVPLFGNGDILSYEDAMKA--RETGVSGIMV 529
Query: 580 GRGALIKPWIFQEIKEKKLFDIYA 603
RGALIKPW+F EIKE + +DI +
Sbjct: 530 ARGALIKPWLFTEIKESRHWDISS 553
>gi|291242586|ref|XP_002741186.1| PREDICTED: CG3645-like [Saccoglossus kowalevskii]
Length = 599
Score = 355 bits (911), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 219/602 (36%), Positives = 308/602 (51%), Gaps = 163/602 (27%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEV-----EDDGTAKKKFKKNKQVLKG 59
G+AKIK +FI + +K LS E +E K+ E+ E E D KK K K +G
Sbjct: 47 GLAKIKDKFIDWEKIK-LSRE-KSEGTKKDAEKTEKTNKDNETDEPPLKKVKHEKS--RG 102
Query: 60 QNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVF 119
QNK R D CP + E+ C +GEKC+F H+ FM +KP DI ++CY F
Sbjct: 103 QNKHRPRDKKIDCSDRLCPSI---LTEKVCTFGEKCRFEHNVKEFMTTKPPDIGDKCYAF 159
Query: 120 LQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
+G C + CRFG+SHL E+ N++ D K++ V +K N+L+ ++++ L K Y
Sbjct: 160 ETYGKCFYSLMCRFGTSHLGEDYTNLIDNDKFKDY---VPSK--NVLSKDLQRLLWKKKY 214
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
+EK++ + + S +E+ P+ D
Sbjct: 215 KYEKTDNMHVNSSPSLSES----------------------IPDKD-------------- 238
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
+K++ EKKKID+ KLYL+PLTTVGNLPFRR+CK++GADITC EMA+ T LL+
Sbjct: 239 -----VKMRICEKKKIDFSNKLYLAPLTTVGNLPFRRICKRYGADITCGEMAMCTNLLQG 293
Query: 300 SPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
EWAL+KRH +EDLFGVQLCG+ P +TKC ++L ++M +DF+DVN+GCPI+ ++K+G
Sbjct: 294 QLSEWALVKRHHTEDLFGVQLCGSFPDTMTKCAEILNDKMDIDFIDVNVGCPIDLVFKKG 353
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
G L+ R + F +++T + +++
Sbjct: 354 GGCALMGRLSRF--------EHIITGMSSVMD---------------------------- 377
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
+PITVK R GI +N H +P+ RDWG S++TLHGR+RE
Sbjct: 378 -------------------IPITVKMRAGIQDNNFTAHKVLPRLRDWGVSMVTLHGRSRE 418
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
QRYTK ADWDYI KCA
Sbjct: 419 QRYTKIADWDYISKCA-------------------------------------------- 434
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
++ P PLYGNGDILSYED ++ +SGVMI RGALIKPW+F EIKE++ +
Sbjct: 435 -----EIAKPMPLYGNGDILSYEDANRQ-RQHTGVSGVMIARGALIKPWVFTEIKEQRHW 488
Query: 600 DI 601
DI
Sbjct: 489 DI 490
>gi|195433972|ref|XP_002064980.1| GK14924 [Drosophila willistoni]
gi|194161065|gb|EDW75966.1| GK14924 [Drosophila willistoni]
Length = 579
Score = 355 bits (910), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 215/599 (35%), Positives = 312/599 (52%), Gaps = 137/599 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNE-TDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
G+ IK E++VE + + NE ++KRK +E E++ +KK K+ +GQNK
Sbjct: 4 GICYIKPEYLVEAVGESTWSKGPNEESNKRKNDEKASEEENVSKKGGGGKKERKRGQNKN 63
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
R P F + C L D C E C++VHD + F+ +K ED+ +CYV+ G
Sbjct: 64 R-PVFKDERYSHLCHSLIDGPGGNACSL-ENCRYVHDLDAFLAAKSEDLGTECYVYTTKG 121
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YC G+ CRF +HLD G NI ++D + T N +++E++ LRKH Y+F +
Sbjct: 122 YCGRGVTCRFSKAHLDAQGRNIKRDD----YDEKAAKTTYNGISSELQVSLRKHNYDFSR 177
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
S+++ ++ + ++ K+ RE++N + +T S V+D+
Sbjct: 178 SKELIRDAEKIRDARKE---------------REKLNK---------ETDTASTTVIDSP 213
Query: 244 IIKIKNSE---KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
+ ++ K ID++ KL LSPLTTVGNLPFRR+CK++GADITC EMA A ++K
Sbjct: 214 KGRDADAADRVKPPIDFREKLILSPLTTVGNLPFRRICKEFGADITCGEMACALPIVKGL 273
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
QEWAL KRHESED FGVQLCGNNP ++++ Q+L + VD++D+N+GCPI+ IY+QG
Sbjct: 274 SQEWALTKRHESEDFFGVQLCGNNPNIISQAAQVLHDTAKVDYIDLNIGCPIDLIYQQGG 333
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
GS L++R N+ + + C+ NL + F K
Sbjct: 334 GSALMRRTNILEL--------TVRSCS--------------NLSPQLPFTVKM------- 364
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
RTGI+ D ++ H +P +WGA+ +TLHGR+REQ
Sbjct: 365 -------------------------RTGIYADKSVAHELLPLVEEWGAAAVTLHGRSREQ 399
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK A+W+YIE+CA S+ +I
Sbjct: 400 RYTKHANWEYIEECA---SKAKSI------------------------------------ 420
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
P+ GNGDILSYEDY E + +P +S VMIGRGALIKPWIFQEIKEK+ +
Sbjct: 421 ----------PVIGNGDILSYEDYVERRQIAPHVSSVMIGRGALIKPWIFQEIKEKRAW 469
>gi|21430920|gb|AAM51138.1| SD26982p [Drosophila melanogaster]
Length = 604
Score = 354 bits (909), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 216/605 (35%), Positives = 311/605 (51%), Gaps = 122/605 (20%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQN 61
SG+ IK E++V D + ++T+KRK EE + G +K KK ++ +GQN
Sbjct: 3 SGICYIKPEYLVTEADGGSAAANTENSDTNKRKREEGGEVEAGEKRKWDKKERK--RGQN 60
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
K R P F + C L D T + C C++VHD + ++ +K ED+ +CYV+
Sbjct: 61 KNR-PVFKDERYSHLCHSLIDGTGGEPCSLA-NCRYVHDLDAYLAAKGEDLGPECYVYTT 118
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYC G++CRF +H DE G N+ +ED ++ T T N +++E++ LRKH Y+F
Sbjct: 119 KGYCARGVSCRFAKAHTDEQGRNLKREDYDEKAPPT----TCNGVSSELQVRLRKHEYDF 174
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS----- 236
+S+++ K + ++ K + + ++ + E E T +++ +++T S
Sbjct: 175 SRSKELIKMAEKLRDARKLMEQ--QEKEKNLSEETGEKQPSETTEILDAEKQTDSKSKPT 232
Query: 237 --GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
G +D I K +D++ KL LSPLTT+GNLPFRR+CK++GADITC EMA A
Sbjct: 233 ATGCAIDDSAIGRDADHKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQ 292
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LLK QEWAL KRH+SED+FGVQLCGNNP +L + Q++ E VDF+D+N+GCPI+
Sbjct: 293 PLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDL 352
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
IY+QG GS L++R N+ + + C L + + F K
Sbjct: 353 IYQQGGGSALMRRTNILEL--------TVRSCAALSDR--------------LPFTVKMR 390
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
+G I+ D ++ H +P +WGAS +TLH
Sbjct: 391 TG--------------------------------IYADKSVAHELLPLVEEWGASAVTLH 418
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK A+W YIE+CA R
Sbjct: 419 GRSREQRYTKHANWAYIEECAAKAKR---------------------------------- 444
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK
Sbjct: 445 ---------------MPVIGNGDILSYEDYMERRTLAPHVSSVMIGRGALIKPWIFQEIK 489
Query: 595 EKKLF 599
EK+ +
Sbjct: 490 EKQAW 494
>gi|395850935|ref|XP_003798027.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Otolemur garnettii]
Length = 644
Score = 354 bits (909), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 212/627 (33%), Positives = 316/627 (50%), Gaps = 148/627 (23%)
Query: 5 GVAKIKQEFIV-----------EDHVKVLSIECVNETDKRKLEELEVE----DDGTAKKK 49
GVA IK +++ +H K V + L E E + ++G +
Sbjct: 27 GVAPIKPQYLTTKEQFHKFLETNEHEKPCQKTEVGDPGGNDLAEPEAKRIHLEEGQTDEA 86
Query: 50 FKKNKQVL-----KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDK 101
+ +Q+L +GQNK+R PT K + CP L ++ + C +G++C+F+HD
Sbjct: 87 AEHGEQLLACKRARGQNKSRPHMKPTHYDK--NRLCPSLIQGSVAK-CFFGDRCRFLHDV 143
Query: 102 NVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNK 161
++++KP D+ +C +F G CP G+ CRF +HL G N+V+ED++ W +
Sbjct: 144 GCYLETKPADLGPRCVLFETFGRCPYGVTCRFAMAHLGPEGQNLVQEDLVARWAR-LSPV 202
Query: 162 TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEG------ 215
N L ++Q LRK +FE++EK ++ ++D+ ++ EG
Sbjct: 203 VCNGLDKTLQQQLRKRKIHFERAEKTLRQL------SQDSPPAAALREVTAAEGAPGHSE 256
Query: 216 -REEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPF 274
+EE+++ T GP+ D DII+++ EKK++D GKLYL+PLTT GNLPF
Sbjct: 257 SQEELSSLATG--TPPPPVRTCGPLTDEDIIRLRPCEKKQLDISGKLYLAPLTTCGNLPF 314
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQL 334
RR+CK++GAD+TC EMAV T LL+ EWAL+KRH+ ED+FGVQL G P +TKC +L
Sbjct: 315 RRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAEL 374
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
L + VDFVD+N+GCPI+ +YK+G G L+ R+ F Q
Sbjct: 375 LNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF---------------------QQ 413
Query: 395 VVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN 454
+V ++ L P +TVK RTG+ + N
Sbjct: 414 IVRGMNQVLDVP----------------------------------LTVKIRTGVQERVN 439
Query: 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
+ H +P+ WGA+L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 440 LAHRLLPELWGWGAALVTLHGRSREQRYTKLADWQYIEQC-------------------- 479
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
+ SP PL+GNGDILSYED +++ +
Sbjct: 480 -----------------------------VKAASPMPLFGNGDILSYEDANRAMQT--GV 508
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDI 601
+G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 509 AGIMIARGALLKPWLFTEIKEQRHWDI 535
>gi|432950959|ref|XP_004084692.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Oryzias latipes]
Length = 600
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 224/619 (36%), Positives = 309/619 (49%), Gaps = 164/619 (26%)
Query: 3 ASGVAKIKQEFIV--EDHVKVLSIEC--VNETDKRKLEELEVEDDGTAK----KKFKKNK 54
+ G A IK EF+ E + L E V ++K + +E++ K +K +
Sbjct: 17 SKGQAAIKPEFLTTKEKFHEFLDAELQEVESSEKDQTDEIQEPQHKKPKHDLQEKSRAEG 76
Query: 55 QVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQT-----------CKYGEKCKFVHDKNV 103
Q L+GQNK+R P +K +T E+ C +G+KC F+HD
Sbjct: 77 QRLRGQNKSR-------------PHVKPTTYEEKRLCLAVLQNRDCAFGQKCYFLHDVGE 123
Query: 104 FMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTV 163
+M++K DI + CY++ G C G++CRF +H + + +++K G TV
Sbjct: 124 YMRTKAADIGDSCYLYDTFGKCGYGLSCRFAKAHTTADFQTMEDGELMK---TKEGRTTV 180
Query: 164 -NMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP 222
N L+ E++ LRK F KSE+ K SK++ TD K + + +NT
Sbjct: 181 KNALSKELQNRLRKRKVVFTKSEEYLKSLSKSKDK---TDGGGKGEQRE-----RRVNT- 231
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWG 282
GP+ D D+IK++ EKKK+D++ KLYL+PLTT GNLPFRR+CK++G
Sbjct: 232 -------------VGPLTDADVIKLRPCEKKKVDFRDKLYLAPLTTCGNLPFRRVCKRFG 278
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVD 342
ADITC EMAV T LL+ EWAL+KRHESEDLFGVQ+ G P +TKC +L+ + VD
Sbjct: 279 ADITCGEMAVCTNLLQGQQSEWALLKRHESEDLFGVQVEGCFPDTMTKCAELINQNTEVD 338
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
FVD+N GCPI+ IYK+G G GL+ R T+ LE+
Sbjct: 339 FVDINSGCPIDLIYKKGGGCGLMAR-------------------TRKLEQ---------- 369
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
+I M+ V +P+TVK RTG+ + +N+ H +P+
Sbjct: 370 --------------------------IIKGMHHVLDVPLTVKIRTGVQEKSNVAHKLIPE 403
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
+ WG SLITLHGR+REQRYTK ADWDYI CA+
Sbjct: 404 MKGWGVSLITLHGRSREQRYTKLADWDYIGACAE-------------------------- 437
Query: 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582
L P PL+GNGDILSYED + K +SG+MI RG
Sbjct: 438 -----------------------LARPVPLFGNGDILSYEDAVRA--KQTGVSGIMIARG 472
Query: 583 ALIKPWIFQEIKEKKLFDI 601
ALIKPWIF EIKE + +DI
Sbjct: 473 ALIKPWIFTEIKESRHWDI 491
>gi|344306054|ref|XP_003421704.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-dihydrouridine synthase 3-like
[Loxodonta africana]
Length = 659
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 211/621 (33%), Positives = 311/621 (50%), Gaps = 134/621 (21%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKR-KLEELEVEDDGTAKKKFKKNKQVL-- 57
++A G K QE + ++ S + KR +L + +VED T + ++ ++L
Sbjct: 44 LEARGEEKFAQE---TEAIEPESHDLAEPEAKRVRLADGQVEDGQTVAGQTEEASELLEQ 100
Query: 58 -------KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
+GQNK+R PT + CP L + + C +G++C+F+HD ++++
Sbjct: 101 PQAQKRARGQNKSRPHLKPTHYDG--NRLCPSLIQGSASK-CFFGDRCRFLHDVGRYLET 157
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
KP ++ C +F G CP G+ CRF +HL G N+V+E++ + +T+ + N L
Sbjct: 158 KPGELGPCCVLFETFGRCPYGVTCRFAGAHLGPEGQNLVREELAAQGAHTLPVR--NTLD 215
Query: 168 NEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVI------EGREEINT 221
++Q LRK FE++E+ + + + + + G +
Sbjct: 216 KTLQQQLRKRKVRFERAERALLQLSQGQPLGPVSTAAATPEAAAAEGAPGQGHGDAQQAL 275
Query: 222 PNTDDVIKVQEETKS-GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKK 280
P D K+ GP+ D D+IK++ EKK++D GKLYL+PLTT GNLPFRR+CK+
Sbjct: 276 PGPDATALPSSPVKTCGPLTDEDVIKLRPCEKKRLDIGGKLYLAPLTTCGNLPFRRICKR 335
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA 340
+GAD+TC EMAV T LL+ EWAL+KRH SEDLFGVQL G P +T+C +LL +
Sbjct: 336 FGADVTCGEMAVCTNLLQGQTSEWALLKRHHSEDLFGVQLEGAFPDTMTRCAELLNRTIE 395
Query: 341 VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
VDFVD+N+GCPI+ +YK+G G L+ R+ F + G N +D
Sbjct: 396 VDFVDINVGCPIDLVYKKGGGCALMSRSTKFRQIVLGMN-----------------QVLD 438
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFM 460
V L TVKTRTG+ + N+ H +
Sbjct: 439 VPL--------------------------------------TVKTRTGVQERANLAHRLL 460
Query: 461 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520
P+ RDWG +L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 461 PELRDWGVALVTLHGRSREQRYTKMADWQYIEQC-------------------------- 494
Query: 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580
+ SP PL+GNGDILSYED +++ ++GVMI
Sbjct: 495 -----------------------VRAASPMPLFGNGDILSYEDANRAMQT--GVAGVMIA 529
Query: 581 RGALIKPWIFQEIKEKKLFDI 601
RGAL+KPW+F EIKE++ +DI
Sbjct: 530 RGALLKPWLFTEIKEQRHWDI 550
>gi|213514710|ref|NP_001133911.1| tRNA-dihydrouridine synthase 3-like [Salmo salar]
gi|209155790|gb|ACI34127.1| tRNA-dihydrouridine synthase 3-like [Salmo salar]
Length = 654
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 220/599 (36%), Positives = 308/599 (51%), Gaps = 142/599 (23%)
Query: 29 ETDKRKLEELEVE----DDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDC-YCPFLKDS 83
ET + LEE + + D ++ K++ + ++GQNK+R T ++ CP +
Sbjct: 63 ETAEDSLEEPQEKKLKVDPAEQERMGKQDSKRMRGQNKSRPHMKPTSYDNRRLCPSIIQE 122
Query: 84 TLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
E C YG+KCKF+HD +M KP D+ E CY++ G C G++CRF +H+ +
Sbjct: 123 R-ETKCVYGDKCKFIHDVAEYMALKPADVGEHCYLYDTFGKCHYGLSCRFARAHISADLK 181
Query: 144 NIVKEDVLKEWKNTVGNKTV-NMLANEVRQDLRKHTYNFEKSEKICKE------------ 190
N+ E+ K VG V N L +++ LRK F S+ K
Sbjct: 182 NLANEE---RAKAMVGRTPVRNSLDKDLQWRLRKKVVPFTASDAYMKTIFKGGHKAGEGW 238
Query: 191 NKASKNENKDTDDCCKNQDSKVIEGR-EEINTPNTDD--VIKVQEETKS-----GPVLDT 242
KA+ EN D+CC S V+ + E P T D +V +E + GP+ D
Sbjct: 239 KKAATAEN--VDNCC----SAVVHSQCSEGENPQTSDNQGTEVSQENLARVKTIGPLTDA 292
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D+IK++ EKK++D++ KLYL+PLTT GNLPFRR+CK++GADITC EMA+ T LL+
Sbjct: 293 DVIKLRQCEKKQVDFKDKLYLAPLTTCGNLPFRRICKRFGADITCGEMAMCTNLLQGQSS 352
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
EWAL+KRHESEDLFGVQ+ G P +T+C +LL ++ VDFVD+N GCPI+ +YK+G G
Sbjct: 353 EWALLKRHESEDLFGVQVEGCFPDTMTRCAELLNNKIDVDFVDINSGCPIDLVYKKGGGC 412
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
GL+ R N F EQ++ +G S L
Sbjct: 413 GLMTRTNKF--------------------EQII-----------------RGMNSVL--- 432
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+P+TVK RTG+ + NI H +P+ + WG S+ITLHGR+REQRY
Sbjct: 433 ---------------DVPLTVKIRTGVQEKANIAHKLIPEMKKWGVSMITLHGRSREQRY 477
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
TK ADWDYI C+QL
Sbjct: 478 TKSADWDYINTCSQL--------------------------------------------- 492
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILSY D ++ + +SG+M+ RGALIKPW+F EIKE++ +DI
Sbjct: 493 ----ASPIPLFGNGDILSYYDAMKA--RETDVSGIMLARGALIKPWVFTEIKERRDWDI 545
>gi|340377885|ref|XP_003387459.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Amphimedon
queenslandica]
Length = 560
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 208/564 (36%), Positives = 290/564 (51%), Gaps = 155/564 (27%)
Query: 38 LEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKF 97
LEV TA + K+ +GQNK R PT + + CP + TC++G+KC++
Sbjct: 32 LEVTTPQTAPEAPPTKKR--RGQNKHRPPTRLDFSQQ-LCPSFHAK--DYTCRFGDKCRY 86
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
HD +++SKP DIS++CY++ +G C GIACRFGSSH+ G NI+ + + E +
Sbjct: 87 SHDVKGYLESKPPDISDKCYMYTTYGMCLSGIACRFGSSHISVEGENIINKSLYDEKRI- 145
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
N++ ++ LRK +F +SE+ K
Sbjct: 146 --KSVSNVIEKSLQIALRKKKVSFPRSEEYLKS--------------------------- 176
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
+ T SGP D D I + EKKK+D+ KLYL+PLTTVGNLPFRR+
Sbjct: 177 -VGT--------------SGPCTDEDRISLTPREKKKVDFSNKLYLAPLTTVGNLPFRRI 221
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
CK++GADITCSEMA+A LL+ EWAL+KRHESED+FG+Q+CG++ V+T+C +L+
Sbjct: 222 CKRFGADITCSEMAMAFNLLQGQQSEWALVKRHESEDIFGIQVCGSSVDVMTRCAELINI 281
Query: 338 QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+VDF+D+N GCPI+ ++K+GSG GL+QR F EQ+V
Sbjct: 282 HCSVDFIDINCGCPIDLVFKKGSGCGLMQRKGRF--------------------EQIVRG 321
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
M++V +P+TVK RTG++ + H
Sbjct: 322 -----------------------------------MSQVIDIPLTVKMRTGVYNKSWNAH 346
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
P ++WG+SL+T+HGR+REQRYT ADWDYI++CA+
Sbjct: 347 KLSPCIKEWGSSLLTIHGRSREQRYTHLADWDYIDECAE--------------------- 385
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577
L P P+YGNGD+LSYEDY ++ ISGV
Sbjct: 386 ----------------------------LAHPMPVYGNGDVLSYEDYQYGVEGR-KISGV 416
Query: 578 MIGRGALIKPWIFQEIKEKKLFDI 601
MI RGALIKPWIF EIKEK+ +DI
Sbjct: 417 MIARGALIKPWIFTEIKEKRHWDI 440
>gi|195156385|ref|XP_002019081.1| GL26174 [Drosophila persimilis]
gi|194115234|gb|EDW37277.1| GL26174 [Drosophila persimilis]
Length = 577
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 214/597 (35%), Positives = 299/597 (50%), Gaps = 135/597 (22%)
Query: 5 GVAKIKQEFIVEDHV--KVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
G+ IK E+++ + + + +ET+KRK + ED + K K +GQNK
Sbjct: 4 GICYIKPEYLLTEASGNSETATQESSETNKRKRAD-GSEDTEDSGGKKDNKKDRKRGQNK 62
Query: 63 ARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQH 122
R P F C L D C C++VHD + F+ +K ED+ +CYV+
Sbjct: 63 NR-PVFKEDRYSHLCHSLIDGPGGDPCSLA-NCRYVHDLDAFLAAKGEDLGSECYVYSTK 120
Query: 123 GYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFE 182
GYC G+ CR+ +H D+ G NI K+D + T N + +++ LRKH YN +
Sbjct: 121 GYCGRGVTCRYAKAHTDDQGRNIKKDD----YDAKANQTTFNGITPDLQVRLRKHEYNLD 176
Query: 183 KSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT 242
+S+ + + ++ K + + E + E+ N + K+ ++ D
Sbjct: 177 RSKLMIAVAEKIRDARKQRE---------LQEKKLEVQEKNLELQKKINQQ-------DA 220
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D K +D++ KL LSPLTTVGNLPFRR+CK+ GADITC EMA A LLK Q
Sbjct: 221 D-------RKPAVDFREKLVLSPLTTVGNLPFRRICKELGADITCGEMACAVPLLKGLGQ 273
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
EWAL KRHESED+FGVQLCGNNP V+T+ Q+L+E VD++D+N+GCPI+ IY+QG GS
Sbjct: 274 EWALTKRHESEDIFGVQLCGNNPNVITQAAQVLQETAKVDYIDLNIGCPIDLIYQQGGGS 333
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
L++R N+ + V+ C+ L E+
Sbjct: 334 ALMRRTNILEL--------VVRSCSSLSEQ------------------------------ 355
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
LP TVK RTGI+ D ++ H +P +WGAS +TLHGR+REQRY
Sbjct: 356 ----------------LPFTVKMRTGIYADKSVAHELVPLVEEWGASAVTLHGRSREQRY 399
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
TK A+W+YIE+CA +
Sbjct: 400 TKHANWEYIEQCAATAKQ------------------------------------------ 417
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK++K +
Sbjct: 418 -------MPIIGNGDILSYEDYVERRALAPHVSSVMIGRGALIKPWIFQEIKQQKAW 467
>gi|403295958|ref|XP_003938888.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Saimiri boliviensis boliviensis]
Length = 663
Score = 352 bits (904), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 199/590 (33%), Positives = 298/590 (50%), Gaps = 135/590 (22%)
Query: 28 NETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDST 84
+T+ + E+ + E+ +++ + K+ +GQNK R PT K + CP L +
Sbjct: 84 GQTEDGQTEDGQTEETAEPREQQQTQKRA-RGQNKGRTHVKPTHYDK--NRLCPSLIQES 140
Query: 85 LEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
+ C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N
Sbjct: 141 AAK-CFFGDRCRFLHDVGCYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLGPEGQN 199
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
+V+E++ + N L +++Q LRK FE++E+ ++ +
Sbjct: 200 LVREELAARCAQPAPVR--NGLDKDLQQRLRKRQVRFERAEQALRQLSQGRPPGPAPA-- 255
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKSG-------------PVLDTDIIKIKNSE 251
+ V EG P+ DD Q G P+ D D+++++ E
Sbjct: 256 -----ATVPEGAAAEGAPSQDDCGAQQAPAGPGAGSPPSGPVRTCGPLTDEDMVRLRPCE 310
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH+
Sbjct: 311 KKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQ 370
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R F
Sbjct: 371 CEDVFGVQLEGAFPDTMTKCAELLNRTVEVDFVDINVGCPIDLVYKKGGGCALMNRVAKF 430
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
Q +V ++ L P
Sbjct: 431 ---------------------QQIVRGMNQVLDVP------------------------- 444
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW+YI
Sbjct: 445 ---------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWEYI 495
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
E+C + SP P
Sbjct: 496 EQC-------------------------------------------------VKAASPMP 506
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
L+GNGDILS+ED +++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 507 LFGNGDILSFEDANHAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 554
>gi|195053116|ref|XP_001993476.1| GH13829 [Drosophila grimshawi]
gi|193900535|gb|EDV99401.1| GH13829 [Drosophila grimshawi]
Length = 582
Score = 352 bits (904), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 211/598 (35%), Positives = 300/598 (50%), Gaps = 132/598 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECV--NETDKRK-LEELEVEDDGTAKKKFKKNKQVLKGQN 61
G+ IK E+++ + K I+ E+ KRK ++ E +++ + K+ KK ++ +GQN
Sbjct: 4 GICYIKPEYLLAE-AKGGGIKPAEEGESHKRKHTDDAEKQNEQSNKRDGKKERK--RGQN 60
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
K R P F + C L D C C++VHD + F+ K E++ +CYV+
Sbjct: 61 KHR-PIFKDERFSHLCHSLIDGPGGAACSL-PNCRYVHDLDAFIAGKGEELGSECYVYAT 118
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYC G+ CRF +H D G N+ + T T+N +++EV+ LRKH Y+F
Sbjct: 119 KGYCARGVTCRFAKAHTDAQGRNMKAAHYDVQAPQT----TLNGISSEVQVRLRKHEYDF 174
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
+ +++ K+ + ++ K E+ D+ K +G V+D
Sbjct: 175 SRCKELIKQAEKLRDARK-----------------EQQQEQPMDETPKAVPAKPTGSVID 217
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
K ID++ KL LSPLTTVGNLPFRR+CK++GADITC EMA A LLK
Sbjct: 218 ESPAGRDVERKPIIDFREKLVLSPLTTVGNLPFRRICKEFGADITCGEMACAVPLLKGLG 277
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
QEWAL KRHE+ED+FGVQ+CGNNP V+ + Q+L E VD++D+N+GCPI+ IY+QG G
Sbjct: 278 QEWALTKRHETEDIFGVQVCGNNPNVIAQAAQVLHETSRVDYIDLNIGCPIDLIYQQGGG 337
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L++R N+ ++VV
Sbjct: 338 SALMRRTNIL---------------------ELVVR------------------------ 352
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+C + LP TVK RTGI+ D ++ H MP +WGA+ +TLHGR+REQR
Sbjct: 353 ---------SCSSLSPQLPFTVKMRTGIYADKSVAHELMPLVEEWGAAAVTLHGRSREQR 403
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y KQA+W YIE+CA +
Sbjct: 404 YMKQANWTYIEQCAAQAKQ----------------------------------------- 422
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK+++ +
Sbjct: 423 --------MPVIGNGDILSYEDYVEKRAMAPHVSSVMIGRGALIKPWIFQEIKQQRAW 472
>gi|14602971|gb|AAH09973.1| Dihydrouridine synthase 3-like (S. cerevisiae) [Homo sapiens]
gi|190690551|gb|ACE87050.1| dihydrouridine synthase 3-like (S. cerevisiae) protein [synthetic
construct]
gi|190691915|gb|ACE87732.1| dihydrouridine synthase 3-like (S. cerevisiae) protein [synthetic
construct]
Length = 650
Score = 352 bits (903), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 301/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 239
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 240 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 290
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 291 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 350
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 351 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 410
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 411 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 431
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 432 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 475
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 476 LADWQYIEECVQ------------------------------------------------ 487
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 541
>gi|239788462|ref|NP_064560.2| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform 1 [Homo
sapiens]
gi|110808212|sp|Q96G46.2|DUS3L_HUMAN RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
Length = 650
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 301/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 239
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 240 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 290
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 291 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 350
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 351 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 410
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 411 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 431
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 432 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 475
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 476 LADWQYIEECVQ------------------------------------------------ 487
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 541
>gi|195345193|ref|XP_002039157.1| GM17377 [Drosophila sechellia]
gi|194134287|gb|EDW55803.1| GM17377 [Drosophila sechellia]
Length = 605
Score = 352 bits (903), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 218/605 (36%), Positives = 312/605 (51%), Gaps = 121/605 (20%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEEL-EVEDDGTAKKKFKKNKQVLKGQ 60
SG+ +K E++V D + +ET+KRK E+ EVE +KK K+ +GQ
Sbjct: 3 SGICYMKPEYLVTEADGGSAAANTENSETNKRKREDGGEVE---AGEKKKWDKKERKRGQ 59
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
NK R P F + C L D T + C C++VHD + ++ +K ED+ +CYV+
Sbjct: 60 NKNR-PVFKDERYSHLCHSLIDGTGGEPCSLA-NCRYVHDLDAYLAAKGEDLGPECYVYT 117
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYC G++CRF SH +E G N+ +ED ++ T T N +++E++ LRKH Y+
Sbjct: 118 TKGYCARGVSCRFSKSHTNEQGRNLKREDYDEKAPPT----TCNGVSSELQVRLRKHEYD 173
Query: 181 FEKSEKICKENKASKNENK--DTDDCCKNQDSKVIEGREEINTPN-TDDVIKVQEET--- 234
F +S+++ K + ++ K + + KN+ + P+ T D I +E+T
Sbjct: 174 FSRSKELIKMAEKLRDARKLKEQQEKEKNESEGTVSLTAGEKQPSETTDKIDAEEQTDSK 233
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
++G +D +K +D++ KL LSPLTT+GNLPFRR+CK++GADITC EMA A
Sbjct: 234 RTGCAIDDSTTGRDADQKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQ 293
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LLK QEWAL KRH+SED+FGVQLCGNNP ++ + Q++ E VDF+D+N+GCPI+
Sbjct: 294 PLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMINQAAQVIHETAQVDFIDLNIGCPIDL 353
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
IY+QG GS L++R N+ + + C L + + F K
Sbjct: 354 IYQQGGGSALMRRTNILEL--------TVRSCAALSDR--------------LPFTVKMR 391
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
+G I+ D ++ H +P +WGAS +TLH
Sbjct: 392 TG--------------------------------IYADKSVAHELLPLVEEWGASAVTLH 419
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK A+W YIE+CA R
Sbjct: 420 GRSREQRYTKHANWAYIEECAAKAKR---------------------------------- 445
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK
Sbjct: 446 ---------------MPVIGNGDILSYEDYIERRTLAPHVSSVMIGRGALIKPWIFQEIK 490
Query: 595 EKKLF 599
EK+ +
Sbjct: 491 EKQAW 495
>gi|296232631|ref|XP_002761660.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Callithrix jacchus]
Length = 651
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 196/577 (33%), Positives = 297/577 (51%), Gaps = 122/577 (21%)
Query: 28 NETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDST 84
+T+ R+ E+ + E+ +++ + K+ +GQNK R PT K + CP L +
Sbjct: 85 GQTENRQTEDGQEEETAEPREQQQAQKRA-RGQNKGRSHVKPTHYDK--NRLCPSLIQES 141
Query: 85 LEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
+ C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N
Sbjct: 142 AAK-CVFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLGPEGQN 200
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
+V+E++ N L ++Q LRK FE++E+ ++ + T
Sbjct: 201 LVREELAARCAQP--PPVRNGLDKGLQQQLRKREVRFERAEQALRQLSQGRPPGL-TPAA 257
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLS 264
+D+ + N+P + V GP+ D D+++++ EKK++D +GKLYL+
Sbjct: 258 TVPKDAAARGAPSQDNSPPSSPV------RTCGPLTDEDVVRLRPCEKKRLDIRGKLYLA 311
Query: 265 PLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNN 324
PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH+ ED+FG+QL G
Sbjct: 312 PLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDVFGIQLEGAF 371
Query: 325 PYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLT 384
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R F
Sbjct: 372 PDTMTKCAELLNRTVEVDFVDINVGCPIDLVYKKGGGCALMNRLAKF------------- 418
Query: 385 KCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVK 444
Q +V ++ L P +TVK
Sbjct: 419 --------QQIVRGMNQVLDVP----------------------------------LTVK 436
Query: 445 TRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI 504
RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW+YI +C
Sbjct: 437 IRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWEYIAQC---------- 486
Query: 505 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDY 564
+ SP PL+GNGDILS+ED
Sbjct: 487 ---------------------------------------VKAASPMPLFGNGDILSFEDA 507
Query: 565 TESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 508 NHAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 542
>gi|338726580|ref|XP_001916859.2| PREDICTED: tRNA-dihydrouridine synthase 3 isoform 1 [Equus
caballus]
Length = 657
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 202/585 (34%), Positives = 287/585 (49%), Gaps = 133/585 (22%)
Query: 28 NETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDST 84
+T+ + E+ E+ ++ + K+ +GQNK R PT K D CP L
Sbjct: 90 GQTEDGRTEDGRTEEAAEPGEQPQAQKRA-RGQNKGRPHVKPTHYDK--DRLCPSLVQEP 146
Query: 85 LEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
Q C +G +C+F+HD ++ +KP D+ +C +F G CP G+ CRF +HL G N
Sbjct: 147 ATQ-CAFGARCRFLHDVGRYLAAKPADLGPRCVLFETFGRCPAGVTCRFAGAHLGPGGRN 205
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
+V+++ + N L ++Q LRK FE++E+ ++ +
Sbjct: 206 LVRQE-----QGVQAPPVRNGLDKALQQQLRKRQVRFERAEQALRQLSRGQ--------- 251
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV------LDTDIIKIKNSEKKKIDWQ 258
S V E E P D SGPV D DI++++ EK+++D
Sbjct: 252 LPGPPSAVPEATEAEGAPAQDPQELGTVAPASGPVQTCGALTDEDIVRLRPCEKRRLDIS 311
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL++RH+ ED+FGV
Sbjct: 312 GKLYLAPLTTCGNLPFRRVCKRFGADVTCGEMAVCTNLLQGQTSEWALLRRHQCEDIFGV 371
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
QL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+QR+ F
Sbjct: 372 QLEGAFPDTMTKCAELLNRTVDVDFVDINVGCPIDLVYKKGGGCALMQRSGKF------- 424
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
Q +V + L P
Sbjct: 425 --------------QQIVRGMSQVLDVP-------------------------------- 438
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+TVK RTG+ + + H +P+ R WGA+L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 439 --LTVKLRTGVQERTPLAHRLLPELRTWGAALVTLHGRSREQRYTKLADWRYIEQC---- 492
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
SP PL+GNGDI
Sbjct: 493 ---------------------------------------------VAAASPMPLFGNGDI 507
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
LSYED +++ ++GVMI RGAL+KPW+F EIKE++ +DI A
Sbjct: 508 LSYEDANRAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDISA 550
>gi|189055070|dbj|BAG38054.1| unnamed protein product [Homo sapiens]
Length = 650
Score = 352 bits (902), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 301/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKPLQQQLRKREVRFERAEQALRRFSQGP 239
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 240 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 290
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 291 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 350
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 351 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 410
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 411 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 431
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 432 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 475
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 476 LADWQYIEECVQ------------------------------------------------ 487
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 541
>gi|10436076|dbj|BAB14740.1| unnamed protein product [Homo sapiens]
Length = 650
Score = 352 bits (902), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 300/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQES-AANCFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 239
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 240 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 290
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 291 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 350
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 351 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 410
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 411 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 431
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 432 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 475
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 476 LADWQYIEECVQ------------------------------------------------ 487
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 541
>gi|14249957|gb|AAH08362.1| DUS3L protein, partial [Homo sapiens]
Length = 613
Score = 351 bits (901), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 301/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 28 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 85
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 86 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 144
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 145 AHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 202
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 203 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 253
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 254 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 313
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 314 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 373
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 374 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 394
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 395 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 438
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 439 LADWQYIEECVQ------------------------------------------------ 450
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 451 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 504
>gi|329663208|ref|NP_001193247.1| tRNA-dihydrouridine synthase 3-like [Bos taurus]
gi|296485774|tpg|DAA27889.1| TPA: Dihydrouridine synthase 3-like protein [Bos taurus]
Length = 650
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 204/595 (34%), Positives = 298/595 (50%), Gaps = 146/595 (24%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---------PTFVTKPEDCYCPF 79
E + +LE+ + ED G A++ + +Q L+ Q +ARG PT K + CP
Sbjct: 71 EAKRIRLEDGQTED-GQAEEAAEPGEQ-LQAQKRARGQNKCRPHVKPTHYDK--NKLCPS 126
Query: 80 LKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLD 139
L + + C YG++C+F+HD ++++KP D+ C +F G CP G+ CRF +HL
Sbjct: 127 LVQESAAR-CFYGDRCRFLHDVGHYLETKPADLGPSCVLFETFGRCPYGVTCRFAGAHLG 185
Query: 140 ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
G N+V+E +++ N L ++Q LRK +F+++E+ ++
Sbjct: 186 PEGQNLVREGLVQ------APPVRNGLDKALQQQLRKRKIHFKRAEQALRQLSRGPLPGP 239
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTD--DVIKVQEETKS-----------GPVLDTDIIK 246
++ V EGRE P D D+ +E + GP+ D D+++
Sbjct: 240 -------TPEATVPEGREAEGAPGQDNCDIQLAPQEPDTVGPPSGPLRTCGPLTDEDVVR 292
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
++ EK+++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL
Sbjct: 293 LRPHEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQTSEWAL 352
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ ++K+G G L+
Sbjct: 353 LKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVFKKGGGCALMN 412
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
R F Q +V ++ L P
Sbjct: 413 RLAKF---------------------QQIVRGMNQVLDVP-------------------- 431
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
+TVK RTG+ + N+ H +P RDWGA+L+TLHGR+REQRYTK A
Sbjct: 432 --------------LTVKLRTGVQERVNLAHRLLPDLRDWGAALVTLHGRSREQRYTKLA 477
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW YIE+C
Sbjct: 478 DWQYIEQC-------------------------------------------------VAA 488
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P PL+GNGD+LSYED +L+ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 489 ARPMPLFGNGDVLSYEDANRALQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 541
>gi|195484562|ref|XP_002090745.1| GE13280 [Drosophila yakuba]
gi|194176846|gb|EDW90457.1| GE13280 [Drosophila yakuba]
Length = 609
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 212/603 (35%), Positives = 300/603 (49%), Gaps = 119/603 (19%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
SG+ IK E++V + + ++ K + + ED KK K+ +GQNK
Sbjct: 3 SGICYIKPEYLVTETEGSSAAANTENSENNKRKREDAEDVKDGGKKKWDKKERKRGQNKN 62
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
R P F + C L D T + C C++VHD + ++ +K ED+ +CYV+ G
Sbjct: 63 R-PVFKDERYSHLCHSLIDGTGGEPCSLA-NCRYVHDLDAYLAAKGEDLGLECYVYTTKG 120
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YC G++CRF +H +E G N+ +ED + T N +++E++ LRKH Y+F +
Sbjct: 121 YCARGVSCRFAKAHTNEQGRNLKRED----YDENAPPTTFNGVSSELQVRLRKHDYDFSR 176
Query: 184 SEKICK--ENKASKNENKDTDDCCKNQDSKVIEGREEINTP-NTDDVIKVQEETKS---- 236
S+++ K E + K + KNQ + P +T +++ ++ T S
Sbjct: 177 SKELIKLAEQLRDARKLKVQQEKEKNQSEGTVSSTSGEEEPSDTTEILDAEQLTDSKNEP 236
Query: 237 ---GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
G V+D I +K +D++ KL LSPLTT+GNLPFRR+CK++GADITC EMA A
Sbjct: 237 TGIGCVIDESAIGRDADQKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACA 296
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
LLK QEWAL KRH+SED+FGVQLCGNNP ++ + Q++ E VDF+D+N+GCPI+
Sbjct: 297 QPLLKGMGQEWALTKRHQSEDIFGVQLCGNNPNMINQAAQVIYETAQVDFIDLNIGCPID 356
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
IY+QG GS L++R N+ + + C L + F K
Sbjct: 357 LIYQQGGGSALMRRTNILEL--------TVRSCAALSNR--------------LPFTVKM 394
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
+G I+ D ++ H +P +WGAS +TL
Sbjct: 395 RTG--------------------------------IYADKSVAHELLPLVEEWGASAVTL 422
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYTK A+W YIE+CA R
Sbjct: 423 HGRSREQRYTKHANWAYIEECAAKAKR--------------------------------- 449
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEI
Sbjct: 450 ----------------MPVIGNGDILSYEDYIERRTLAPHVSSVMIGRGALIKPWIFQEI 493
Query: 594 KEK 596
KEK
Sbjct: 494 KEK 496
>gi|355685044|gb|AER97601.1| dihydrouridine synthase 3-like protein [Mustela putorius furo]
Length = 647
Score = 351 bits (901), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 203/586 (34%), Positives = 297/586 (50%), Gaps = 131/586 (22%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQV-LKGQNKARG---PTFVTKPEDCYCPFLKDST 84
E + +LE+ E + K K K+V ++GQNK R PT K + CP L +
Sbjct: 72 EAKRIRLEDGEAGEAAERGDKPKVQKRVRVRGQNKGRPHMKPTHYDK--NRLCPSLVQES 129
Query: 85 LEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
+ C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N
Sbjct: 130 AAK-CFFGDRCRFLHDVGRYLETKPSDLGPRCVLFETFGRCPYGVTCRFAGAHLGPEGQN 188
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE---------NKASK 195
+V+E+ ++ N L ++Q LRK FE++E+ ++ + +
Sbjct: 189 LVREERVQ------APPVRNGLDKALQQQLRKRKVRFERAEQALRQLSKGHLPGPSPEAA 242
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
+ + QDS + ++ + P D + T GP+ D DI++++ EK+K+
Sbjct: 243 VPDVSGAEGAPGQDSG--DTQQALLEPAADAPVSGSGRT-CGPLTDEDIVRLRPCEKRKL 299
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL++RH ED+
Sbjct: 300 DLSGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQTSEWALLRRHPCEDV 359
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R F
Sbjct: 360 FGVQLEGAFPDTMTKCAELLNRTVDVDFVDINVGCPIDLVYKKGGGCALMNRTAKF---- 415
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
Q +V ++ L P
Sbjct: 416 -----------------QQIVRGMNQVLDVP----------------------------- 429
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
+TVK RTG+ + N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW YI +C
Sbjct: 430 -----LTVKIRTGVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWGYIAQC- 483
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
SP PL+GN
Sbjct: 484 ------------------------------------------------VTAASPMPLFGN 495
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GDILSYED +++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 496 GDILSYEDANRAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 539
>gi|348530032|ref|XP_003452515.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Oreochromis
niloticus]
Length = 627
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 224/619 (36%), Positives = 313/619 (50%), Gaps = 137/619 (22%)
Query: 3 ASGVAKIKQEFIV-EDHVKVLSIECVNETDKRKLEELEVEDDG-------TAKKKFKKN- 53
A G A IK EF+ +D L + + K E + DD K+ K+N
Sbjct: 17 AKGEAAIKSEFLTTKDKFHGLLDSESQGSKREKASESDTVDDSKETSLEEPEPKRLKQNF 76
Query: 54 -----KQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLE-QTCKYGEKCKFVHDKNVFMKS 107
+ L+GQNK+R T KP L S ++ + C +G KC F HD +M S
Sbjct: 77 EGRPDGKRLRGQNKSRPHT---KPTAYDEKRLCHSIIQNKECPFGAKCFFDHDIVKYMDS 133
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
KP DI E C+++ G C G++CRF +H + ++ K D++K ++ K N ++
Sbjct: 134 KPPDIGETCHIYETFGKCAYGLSCRFAKAHTTPDFKSMEKADLVKVYEGRTMVK--NNMS 191
Query: 168 NEVRQDLRKHTYNFEKSEKICK-----ENKASKNENKDTDDCCKNQDSKVIEGREEINTP 222
E++ LRK + +FEKSEK K ++K ++ N T + +++ + +
Sbjct: 192 KELQGRLRKRSVSFEKSEKYLKTLSDNKDKGAQQGNGKTSEKAFIKNAAITNFTHAFSDK 251
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWG 282
V V GP+ D D+IK++ EKK++D+Q KLYL+PLTT GNLPFRR+CK++G
Sbjct: 252 QPAPVKTV------GPLTDADVIKLRPCEKKQVDFQDKLYLAPLTTCGNLPFRRVCKRFG 305
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVD 342
ADITC EMA+ T LL+ EWAL++RHESED+FG+QL G+ P +T+C +L+ VD
Sbjct: 306 ADITCGEMAMCTNLLQGHQSEWALLRRHESEDVFGIQLEGSFPDTMTRCAELINNNTEVD 365
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
FVD+N GCPI+ +Y +G G GL+ R F + G N YVL DV
Sbjct: 366 FVDINSGCPIDLVYNKGGGCGLMTRTRKFERIVKGMN-YVL----------------DVP 408
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
L TVK RTG+ + +NI H +P+
Sbjct: 409 L--------------------------------------TVKIRTGVQEKSNIAHKLIPE 430
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
++WG S+ITLHGR+REQRYTK ADWDYI CA+L
Sbjct: 431 MKNWGVSMITLHGRSREQRYTKLADWDYITTCAKL------------------------- 465
Query: 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582
SP PL+GNGDILSYED ++ K +SG+MI RG
Sbjct: 466 ------------------------ASPIPLFGNGDILSYEDAMKA--KETGVSGIMIARG 499
Query: 583 ALIKPWIFQEIKEKKLFDI 601
ALIKPWIF EIKE + +DI
Sbjct: 500 ALIKPWIFTEIKESRHWDI 518
>gi|194879304|ref|XP_001974213.1| GG21206 [Drosophila erecta]
gi|190657400|gb|EDV54613.1| GG21206 [Drosophila erecta]
Length = 609
Score = 351 bits (900), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 215/608 (35%), Positives = 309/608 (50%), Gaps = 123/608 (20%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQN 61
SG+ IK E++V D + +E +KRK E+ E G KK K+ +GQN
Sbjct: 3 SGICYIKPEYLVTEADGGSAAANTENSENNKRKREDGEEVQAGGKKKW--DKKERKRGQN 60
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
K R P F + C L D T + C + C++VHD + F+ +K ED+ +CYV+
Sbjct: 61 KNR-PVFKDERYSHLCHSLIDGTGGEACSL-DNCRYVHDLDAFLAAKGEDLGLECYVYTT 118
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYC G++CRF +H +E G N+ +ED + + T N +++E++ LRKH Y+F
Sbjct: 119 KGYCARGVSCRFAKAHTNEQGRNLKRED----YDDKAPPTTCNGVSSELQVRLRKHDYDF 174
Query: 182 EKSEKICKENKASKNENK--DTDDCCKNQ-DSKVIEGREEINTPNTDDVIKVQEETKS-- 236
+S+++ + + ++ K + + NQ + V E +T +++ ++ T S
Sbjct: 175 SRSKELIRMAEKLRDARKLKEKQEKENNQSEGTVTPPAGEKQPSDTAEMLDAEQHTDSKS 234
Query: 237 -----GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
G +D I +K +D++ KL LSPLTT+GNLPFRR+CK++GADITC EMA
Sbjct: 235 KPTATGCAIDDSAIGRDADQKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMA 294
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP 351
A LLK QEWAL KRH+SED+FGVQLCGNNP ++ + Q++ E VDF+D+N+GCP
Sbjct: 295 CAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMINQAAQVIHETAQVDFIDLNIGCP 354
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ IY+QG GS L++R N+ + + C L + + F
Sbjct: 355 IDLIYQQGGGSALMRRTNILEL--------TVRSCAALSDR--------------LPFTV 392
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
K +G I+ D ++ H +P +WGAS +
Sbjct: 393 KMRTG--------------------------------IYADKSVAHELLPLVEEWGASAV 420
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGR+REQRYTK A+W YIE+CA R
Sbjct: 421 TLHGRSREQRYTKHANWAYIEECAAKAKR------------------------------- 449
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQ
Sbjct: 450 ------------------MPVIGNGDILSYEDYIERRTLAPHVSSVMIGRGALIKPWIFQ 491
Query: 592 EIKEKKLF 599
EIKEK+ +
Sbjct: 492 EIKEKQAW 499
>gi|351712194|gb|EHB15113.1| tRNA-dihydrouridine synthase 3-like protein [Heterocephalus glaber]
Length = 645
Score = 350 bits (899), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 204/587 (34%), Positives = 293/587 (49%), Gaps = 135/587 (22%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDSTL 85
E + +LE + E+ ++ + K+ +GQNK R PT K + CP L +
Sbjct: 71 EAKRIRLENGQTEEAAEPGEQRQAQKRA-RGQNKVRPHMKPTHYDK--NRLCPSLVQESP 127
Query: 86 EQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI 145
Q C +G++C+F+HD +++SKP D+ C +F G CP G+ CRF +HL G N+
Sbjct: 128 GQ-CFFGDRCRFLHDVGRYLESKPPDLGPHCVLFETFGRCPYGVTCRFAGAHLGPEGQNL 186
Query: 146 VKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE-----------NKAS 194
V+E++L + + N L ++Q LRK FE++E+ + K +
Sbjct: 187 VREELLAYGAHPPPLR--NGLDKALQQQLRKRQVRFERAEQALQGLSQGPAPAAAVAKLT 244
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
E + C Q + G +TP V GP+ D D ++++ EKK+
Sbjct: 245 TPEGDPGQNHCATQQDPMGLG---ASTPPGSPV------QTCGPLTDEDTVRLRPCEKKR 295
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T LL+ EWAL+KRH ED
Sbjct: 296 LDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQMSEWALLKRHPCED 355
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R F
Sbjct: 356 IFGVQLAGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRPAKF--- 412
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
Q +V + L P
Sbjct: 413 ------------------QQIVRGMSQVLDMP---------------------------- 426
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+TVK RTG+ + N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW YI++C
Sbjct: 427 ------LTVKIRTGVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWQYIQQC 480
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
++ SP PL+G
Sbjct: 481 VEV-------------------------------------------------ASPMPLFG 491
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
NGDILSYED + K ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 492 NGDILSYEDANRA--KQTGVAGIMIARGALLKPWLFTEIKEQRHWDI 536
>gi|397497105|ref|XP_003819357.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Pan
paniscus]
Length = 654
Score = 350 bits (899), Expect = 9e-94, Method: Compositional matrix adjust.
Identities = 203/601 (33%), Positives = 300/601 (49%), Gaps = 147/601 (24%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTHKRARGQNKGRPHVKPTHYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGQ 239
Query: 191 ----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
+ + E + C Q G +TP + V GP+
Sbjct: 240 LPGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLT 290
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 291 DEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ 350
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 351 MSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGG 410
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G L+ R+ F Q +V ++ L P
Sbjct: 411 GCALMNRSTKF---------------------QQIVRGMNQVLDVP-------------- 435
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQ
Sbjct: 436 --------------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQ 475
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK ADW YIE+C Q
Sbjct: 476 RYTKLADWQYIEECVQ-------------------------------------------- 491
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +D
Sbjct: 492 -----AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWD 544
Query: 601 I 601
I
Sbjct: 545 I 545
>gi|311248426|ref|XP_003123132.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 1 [Sus
scrofa]
gi|311248450|ref|XP_003123140.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 1 [Sus
scrofa]
Length = 652
Score = 350 bits (899), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 203/598 (33%), Positives = 299/598 (50%), Gaps = 134/598 (22%)
Query: 14 IVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVT 70
+VE K + +E D + E E ++ +K+ +GQNK+R PT
Sbjct: 70 LVEPEAKRIRLEDGQTKDGQTEEAAEQREEPQVQKR-------ARGQNKSRPHVKPTHYD 122
Query: 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA 130
K + CP L + + C YG++C+F+HD ++++++KP D+ +C +F G CP G+
Sbjct: 123 K--NRLCPSLIQESASK-CFYGDRCRFLHDVSLYLETKPADLGPRCVLFETFGRCPYGVT 179
Query: 131 CRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE 190
CRF +HL G N+V+E +++ N L ++Q LRK FE+SE+ ++
Sbjct: 180 CRFAGAHLGPEGQNLVQEGLVQ------APNIRNGLDKALQQQLRKRKVCFERSEQALRQ 233
Query: 191 NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS-------GPVLDTD 243
SK + +G E + + ++ GP+ D D
Sbjct: 234 --LSKGRLPGPTPTAAEPEVTEADGAPEQDGCDAQQASHGPQQAPPSGPLRTCGPLTDED 291
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+++++ EK+++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ E
Sbjct: 292 VVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQTSE 351
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
WAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G
Sbjct: 352 WALLKRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCA 411
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
L+ R+ F Q +V ++ L P
Sbjct: 412 LMNRSAKF---------------------QQIVRGMNQVLDVP----------------- 433
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+TVK RTG+ + N+ H +P+ RDWGA+L+TLHGR+REQRYT
Sbjct: 434 -----------------LTVKIRTGVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYT 476
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K ADW YIE+C
Sbjct: 477 KLADWQYIEQC------------------------------------------------- 487
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILSYED ++K ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 VTAASPMPLFGNGDILSYEDANRAMKT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 543
>gi|289742295|gb|ADD19895.1| uncharacterized conserved protein [Glossina morsitans morsitans]
Length = 582
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 220/603 (36%), Positives = 308/603 (51%), Gaps = 146/603 (24%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD--------GTAKKKFKKNKQV 56
G+ IK E+++ D K + E++KR+L E DD G K+ K NK+
Sbjct: 4 GICYIKPEYLIADADKQPKLIGTQESNKRELV-CETADDLIEGGEQTGKENKRCKTNKKE 62
Query: 57 LK-GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
K GQNK R P + C L + E+ C E C++VHD +M +K D+ ++
Sbjct: 63 RKRGQNKNR-PVYKEDRTLHLCNSLLMGSTEKRCSL-ENCRYVHDLQQYMANKQPDLGDR 120
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
C VF GYC G+ CRF ++HLD++G N+ +ED + T N + E++ LR
Sbjct: 121 CPVFDAKGYCHRGVTCRFANAHLDKHGRNVKRED----YDEIKAKTTCNGITTELQVRLR 176
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK 235
KH Y+F KS+ + K+ + E +D C K E + P
Sbjct: 177 KHDYDFSKSKGLVKQAE----ETRDLRKCQKF---------ESVEKP------------- 210
Query: 236 SGPVLDTDIIKIKNSEK-KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
G V+D + IK ++++ + +D+ KL LSPLTTVGNLPFRR+CK++GADITC EMA
Sbjct: 211 IGFVVDEEEIKGRDTKPLRSVDFASKLILSPLTTVGNLPFRRICKEFGADITCGEMACCV 270
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
L+K QEWAL KRHESED+FG+QLCGN+P ++ + QL++E VD++D+N+GCPI+
Sbjct: 271 PLVKGLTQEWALTKRHESEDVFGIQLCGNSPNIVAQAAQLVQETTEVDYLDLNIGCPIDL 330
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
IY+QG GS L++R N+ + ++ C NL I F
Sbjct: 331 IYQQGGGSALMRRTNILEL--------IVRSC--------------ANLNTKIPF----- 363
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
TVK RTG++ D + H+ MP +WGA+ +TLH
Sbjct: 364 ---------------------------TVKMRTGVYADKSTAHDLMPLVEEWGAAAVTLH 396
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK A+W YIE+CA A + T+
Sbjct: 397 GRSREQRYTKNANWTYIEECA---------------------AKVKTI------------ 423
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK
Sbjct: 424 ----------------PVVGNGDILSYEDYNEKRDIAPHVSSVMIGRGALIKPWIFQEIK 467
Query: 595 EKK 597
++K
Sbjct: 468 QQK 470
>gi|355755356|gb|EHH59103.1| tRNA-dihydrouridine synthase 3-like protein [Macaca fascicularis]
Length = 654
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 198/588 (33%), Positives = 298/588 (50%), Gaps = 128/588 (21%)
Query: 29 ETDKRKLEELEVEDDGTAK----KKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLK 81
E + +LE+ + ED T + ++ + ++ +GQNK R PT K + CP L
Sbjct: 71 EAKRIRLEDGQTEDGQTEEAAEPREQPQTQKRARGQNKGRPHVKPTHYDK--NRLCPSLI 128
Query: 82 DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141
+ + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL
Sbjct: 129 QESAAK-CFFGDRCRFLHDVRRYLETKPADLGPRCVLFQTFGRCPYGVTCRFAGAHLGPE 187
Query: 142 GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDT 201
G N+V+E++ N L ++Q LRK FE++E+ + + S+ +
Sbjct: 188 GQNLVQEELAALGAQP--PPVRNGLDKALQQQLRKREVRFERAEQALR--RLSQGQPPGP 243
Query: 202 DDCCKNQDSKVIEGR--------EEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
+ EG +++ T GP+ D D+++++ EKK
Sbjct: 244 TPAAAVPEGTAAEGAPRQGNCGAQQVPTGLGTSTPPSSPVRTCGPLTDEDVVRLRPCEKK 303
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH+ E
Sbjct: 304 RLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCE 363
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
D+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ F
Sbjct: 364 DIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF-- 421
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q +V ++ L P
Sbjct: 422 -------------------QQIVRGMNQVLDVP--------------------------- 435
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW YIE+
Sbjct: 436 -------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEE 488
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
CA + SP PL+
Sbjct: 489 CA-------------------------------------------------KAASPMPLF 499
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 500 GNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 545
>gi|410225896|gb|JAA10167.1| dihydrouridine synthase 3-like [Pan troglodytes]
gi|410330749|gb|JAA34321.1| dihydrouridine synthase 3-like [Pan troglodytes]
Length = 654
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 203/601 (33%), Positives = 300/601 (49%), Gaps = 147/601 (24%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTHKRARGQNKGRPHVKPTHYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGQ 239
Query: 191 ----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
+ + E + C Q G +TP + V GP+
Sbjct: 240 LPGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------QTCGPLT 290
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 291 DEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ 350
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 351 MSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLMYKKGG 410
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G L+ R+ F Q +V ++ L P
Sbjct: 411 GCALMNRSTKF---------------------QQIVRGMNQVLDVP-------------- 435
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQ
Sbjct: 436 --------------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQ 475
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK ADW YIE+C Q
Sbjct: 476 RYTKLADWQYIEECVQ-------------------------------------------- 491
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +D
Sbjct: 492 -----AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWD 544
Query: 601 I 601
I
Sbjct: 545 I 545
>gi|332263177|ref|XP_003280631.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
isoform 1 [Nomascus leucogenys]
Length = 649
Score = 350 bits (898), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 203/601 (33%), Positives = 297/601 (49%), Gaps = 140/601 (23%)
Query: 14 IVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVT 70
+ E K + +E D + E E + +K+ +GQNK R PT
Sbjct: 67 LAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTQKR-------ARGQNKGRPHVKPTHYD 119
Query: 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA 130
K + CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+
Sbjct: 120 K--NRLCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVT 176
Query: 131 CRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE 190
CRF +HL G N+V+E++ + N L ++Q LRK FE++E+ +
Sbjct: 177 CRFAGAHLGPEGQNLVQEELAA--RGAQPPSVRNGLDKALQQQLRKREVRFEQAEQALRR 234
Query: 191 ----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
A+ E D C Q G +TP + V GP+
Sbjct: 235 FSQVQPPGPTPAAAVAEGAPRQDNCGAQQVPAGLG---TSTPPSSPV------RTCGPLT 285
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 286 DEDVVRLQPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ 345
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 346 MSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGG 405
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G L+ R+ F Q +V ++ L P
Sbjct: 406 GCALMNRSTKF---------------------QQIVRGMNQVLDVP-------------- 430
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQ
Sbjct: 431 --------------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQ 470
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK ADW YIE+C
Sbjct: 471 RYTKLADWQYIEEC---------------------------------------------- 484
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +D
Sbjct: 485 ---VKAASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWD 539
Query: 601 I 601
I
Sbjct: 540 I 540
>gi|410306978|gb|JAA32089.1| dihydrouridine synthase 3-like [Pan troglodytes]
Length = 654
Score = 350 bits (897), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 203/601 (33%), Positives = 300/601 (49%), Gaps = 147/601 (24%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTHKRARGQNKGRPHVKPTHYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGQ 239
Query: 191 ----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
+ + E + C Q G +TP + V GP+
Sbjct: 240 LPGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------QTCGPLT 290
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 291 DEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ 350
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 351 MSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLMYKKGG 410
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G L+ R+ F Q +V ++ L P
Sbjct: 411 GCALMNRSTKF---------------------QQIVRGMNQVLDVP-------------- 435
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQ
Sbjct: 436 --------------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQ 475
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK ADW YIE+C Q
Sbjct: 476 RYTKLADWQYIEECVQ-------------------------------------------- 491
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +D
Sbjct: 492 -----AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWD 544
Query: 601 I 601
I
Sbjct: 545 I 545
>gi|193788568|ref|NP_001123329.1| zinc finger protein ZF(C3H)-5 [Ciona intestinalis]
gi|93003036|tpd|FAA00101.1| TPA: zinc finger protein [Ciona intestinalis]
Length = 609
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 224/613 (36%), Positives = 312/613 (50%), Gaps = 140/613 (22%)
Query: 3 ASGVAKIKQEFI------VEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQV 56
+ G A+IK+EF+ VE VK L+ E ET E++ + +KK
Sbjct: 14 SDGTAQIKKEFVTSKPTLVEQTVKPLAEETKEETSAD--SEIKSSNGDRERKK------- 64
Query: 57 LKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQC 116
+GQNK R + CP + + C +GEKC+++HD +M+ KP+D+ E+C
Sbjct: 65 PRGQNKNRPRPKQEQLSLKLCP--SKISEKGYCHFGEKCQYLHDIGKYMELKPDDLGEKC 122
Query: 117 YVFLQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
+ F G C CRF H+++ N G + K D K N+V K N+L +++ LR
Sbjct: 123 FAFQTIGKCNYSFTCRFARDHVEKTNEGYVNKVDEEKLKTNSV--KIKNVLPRDLQLQLR 180
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE---GREE-INTPNTDDVIKVQ 231
K ++F KS+ KE+ +K D Q++K I G EE + T T I
Sbjct: 181 KRKFDFSKSDTAVKESSKAKARKLD-------QNAKKIPENVGNEENVTTVVTTGDITTS 233
Query: 232 EET--KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE 289
E+ K G VLDTD+I +K EKK ID++ KLYL+PLTT GNLPFR +CK+ GADITC E
Sbjct: 234 EDVLNKHGCVLDTDLIPLKTIEKKTIDFRDKLYLAPLTTCGNLPFRVVCKRLGADITCGE 293
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MAVAT +L++ EWAL+KRH ED+FGVQLCG P +++C +L+ + VDF+D+N+G
Sbjct: 294 MAVATNVLQAKGGEWALMKRHPCEDIFGVQLCGAFPDTMSRCAELISKTCEVDFIDINMG 353
Query: 350 CPIEFIYKQGSGSGLLQRAN-LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
CPI+ IYK+G+GS L++R N LF + C N +DV L C
Sbjct: 354 CPIDLIYKKGAGSALMRRTNKLFDIVNCMNRS------------------IDVPLTC--- 392
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA 468
K R G+ N HN +PK RD+G
Sbjct: 393 -----------------------------------KVRAGVETKKNCAHNILPKLRDYGV 417
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
++ T+HGR+RE RYTK ADW YI +CA
Sbjct: 418 AMTTVHGRSREARYTKAADWGYISECA--------------------------------- 444
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
L P P++GNGDILSY DY S+ ++ ++SGVMI RGALIKPW
Sbjct: 445 ----------------ALADPMPVFGNGDILSYHDYM-SVMENTTVSGVMIARGALIKPW 487
Query: 589 IFQEIKEKKLFDI 601
+F EIKE++ +DI
Sbjct: 488 VFTEIKERRDWDI 500
>gi|24585320|ref|NP_610000.1| CG10463 [Drosophila melanogaster]
gi|7298625|gb|AAF53841.1| CG10463 [Drosophila melanogaster]
Length = 604
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 215/612 (35%), Positives = 313/612 (51%), Gaps = 136/612 (22%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEEL-EVEDDGTAKKKFKKNKQVLKGQ 60
SG+ IK E++V D + ++T+KRK E+ EVE +KK K+ +GQ
Sbjct: 3 SGICYIKPEYLVTEADGGSAAANTENSDTNKRKREDGGEVE---AGEKKKWDKKERKRGQ 59
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
NK R P F + C L D T + C C++VHD + ++ +K ED+ +CYV+
Sbjct: 60 NKNR-PVFKDERYSHLCHSLIDGTGGEPCSLA-NCRYVHDLDAYLAAKGEDLGPECYVYT 117
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYC G++CRF +H DE G N+ +ED + T N +++E++ LRKH Y+
Sbjct: 118 TKGYCARGVSCRFAKAHTDEQGRNLKRED----YDENAPPTTCNGVSSELQVRLRKHEYD 173
Query: 181 FEKSEKICK-------------ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
F +S+++ K + + KN +++T + ++ +++++ ++ +T +
Sbjct: 174 FSRSKELIKMAEKLRDARKLKEQQEKEKNPSEETGEKQPSETTEILDAEKQTDTKS---- 229
Query: 228 IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITC 287
+ T +G +D I K +D++ KL LSPLTT+GNLPFRR+CK++GADITC
Sbjct: 230 ----KPTATGCAIDDSAIGRDADHKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITC 285
Query: 288 SEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVN 347
EMA A LLK QEWAL KRH+SED+FGVQLCGNNP +L + Q++ E VDF+D+N
Sbjct: 286 GEMACAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLN 345
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
+GCPI+ IY+QG GS L++R N+ + + C L + +
Sbjct: 346 IGCPIDLIYQQGGGSALMRRTNILEL--------TVRSCAALSDR--------------L 383
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG 467
F K +G I+ D ++ H +P +WG
Sbjct: 384 PFTVKMRTG--------------------------------IYADKSVAHELLPLVEEWG 411
Query: 468 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527
AS +TLHGR+REQRYTK A+W YIE+CA
Sbjct: 412 ASAVTLHGRSREQRYTKHANWAYIEECAAKA----------------------------- 442
Query: 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587
KC P+ GNGDILSYEDY E +P + VMIGRGALIKP
Sbjct: 443 --------------KC------MPVIGNGDILSYEDYMERRTLAPHVCSVMIGRGALIKP 482
Query: 588 WIFQEIKEKKLF 599
WIFQEIKEK+ +
Sbjct: 483 WIFQEIKEKQAW 494
>gi|195580263|ref|XP_002079972.1| GD24232 [Drosophila simulans]
gi|194191981|gb|EDX05557.1| GD24232 [Drosophila simulans]
Length = 605
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 216/605 (35%), Positives = 313/605 (51%), Gaps = 121/605 (20%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEEL-EVEDDGTAKKKFKKNKQVLKGQ 60
SG+ IK E++V D + +ET+KRK E+ EVE +KK K+ +GQ
Sbjct: 3 SGICYIKPEYLVTEADGGSAAANTENSETNKRKREDGGEVE---AGEKKKWDKKERKRGQ 59
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
NK R P F + C L D T + C C++VHD + ++ +K ED+ +CYV+
Sbjct: 60 NKNR-PVFKDERYSHLCHSLIDGTGGEPCSLA-NCRYVHDLDAYLAAKGEDLGPECYVYT 117
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYC G++CRF ++H +E G N+ +ED ++ T T N +++E++ LRKH Y+
Sbjct: 118 TKGYCARGVSCRFANAHTNEQGTNLKREDYDEKAPPT----TCNGVSSELQVRLRKHEYD 173
Query: 181 FEKSEKICKENKASKNENK--DTDDCCKNQDSKVIEGREEINTPN-TDDVIKVQEET--- 234
F +S+++ K + ++ K + + KNQ + + P+ T + I +++T
Sbjct: 174 FSRSKELIKMAEKLRDARKLKEQQEKEKNQSEETVSLTAGEKQPSQTTEKIDAEKQTDWK 233
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
+G ++ +K +D++ KL LSPLTT+GNLPFRR+CK++GADITC EMA A
Sbjct: 234 STGCAINDSATGRDADQKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEMACAQ 293
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LLK QEWAL KRH+SED+FGVQLCGNNP ++ + Q++ E VDF+D+N+GCPI+
Sbjct: 294 PLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMINQAAQVIHETAQVDFIDLNIGCPIDL 353
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
IY+QG GS L++R N+ + + C L + + F K
Sbjct: 354 IYQQGGGSALMRRTNILEL--------TVRSCAALSDR--------------LPFTVKMR 391
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
+G I+ D ++ H +P +WGAS +TLH
Sbjct: 392 TG--------------------------------IYADKSVAHELLPLVEEWGASAVTLH 419
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK A+W YIE+CA R
Sbjct: 420 GRSREQRYTKHANWAYIEECAAKAKR---------------------------------- 445
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDILSYEDY E +P +S VMIGRGALIKPWIFQEIK
Sbjct: 446 ---------------MPVIGNGDILSYEDYVERRTLAPHVSSVMIGRGALIKPWIFQEIK 490
Query: 595 EKKLF 599
EK+ +
Sbjct: 491 EKQAW 495
>gi|255003775|ref|NP_659107.2| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Mus musculus]
gi|74186083|dbj|BAE34157.1| unnamed protein product [Mus musculus]
gi|148706257|gb|EDL38204.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_d [Mus
musculus]
Length = 637
Score = 348 bits (894), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 192/548 (35%), Positives = 281/548 (51%), Gaps = 116/548 (21%)
Query: 58 KGQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 93 RGQNKSRPHVKPAHYDK--DRLCPSFLQEPA--TPCAFGDRCRFLHDVGRYLETKPADLG 148
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q
Sbjct: 149 PRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQ 206
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LRK FE++E+ S + K +++T +
Sbjct: 207 LRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPV 266
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
GP+ D D+I+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 267 PTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 326
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 327 TNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPID 386
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
+YK+G G L+ R+ F Q +V V+
Sbjct: 387 LVYKKGGGCALMNRSAKF---------------------QQIVRGVN------------- 412
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
EV +P+TVK RTG+ + ++ H +P+ RDWG +L+TL
Sbjct: 413 ---------------------EVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTL 451
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYT+ ADW YIE+CA+
Sbjct: 452 HGRSREQRYTRLADWPYIEQCAK------------------------------------- 474
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EI
Sbjct: 475 ------------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 520
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 521 KEQRHWDI 528
>gi|359322128|ref|XP_003639789.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 1 [Canis
lupus familiaris]
Length = 645
Score = 347 bits (891), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 198/585 (33%), Positives = 297/585 (50%), Gaps = 131/585 (22%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLKDSTL 85
E + +LE+ + + ++ + K+ +GQNK R PT K + CP L +
Sbjct: 71 EAKRIRLEDGQAGEAAELGERPQVQKRA-RGQNKGRPHMKPTHYDK--NRLCPSLVQESA 127
Query: 86 EQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI 145
+ C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N+
Sbjct: 128 AK-CFFGDRCRFLHDVGRYLETKPSDLGPRCVLFETFGRCPYGVTCRFAGAHLGPEGQNL 186
Query: 146 VKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE---------NKASKN 196
V+E+ ++ N L ++Q LRK FE++E+ ++ + A+
Sbjct: 187 VREERVQ------APPVRNGLDRALQQQLRKRQVRFERAEQALRQLSRGPGTGPSPAAAT 240
Query: 197 ENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKID 256
+ QD + ++ + P + +T GP+ D DI++++ EK+K+D
Sbjct: 241 PEVSGTEGAPGQDGG--DTQQALLEPGAGALASSSVQT-CGPLTDEDIVRLRPCEKRKLD 297
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL++RH ED+F
Sbjct: 298 IGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQTSEWALLRRHPCEDVF 357
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLC 376
GVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ F
Sbjct: 358 GVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSAKF----- 412
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
Q +V ++ L P
Sbjct: 413 ----------------QQIVRGMNQVLDVP------------------------------ 426
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+TVK RTG+ + N+ H +P+ R+WGA+L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 427 ----LTVKIRTGVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTKLADWQYIEQC-- 480
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
SP PL+GNG
Sbjct: 481 -----------------------------------------------VTAASPMPLFGNG 493
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
DILSYED +++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 494 DILSYEDANRAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 536
>gi|354479216|ref|XP_003501809.1| PREDICTED: tRNA-dihydrouridine synthase 3 [Cricetulus griseus]
Length = 646
Score = 347 bits (890), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 197/558 (35%), Positives = 286/558 (51%), Gaps = 137/558 (24%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P+ K + CP L + TC +G++C+F+HD ++++KP D+
Sbjct: 103 RGQNKSRPHVKPSQYDK--ERLCPSLLQES--ATCAFGDRCRFLHDVGRYLETKPADLGP 158
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F G CP + CRF +HL G N+V+E+V+ + + N L ++Q L
Sbjct: 159 RCVLFDTFGRCPYSVTCRFAGAHLGPEGQNLVQEEVVARCVHLPLVR--NGLNRALQQQL 216
Query: 175 RKHTYNFEKSEKICKE-----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
RK FE++E+ + D + C D+ +TP+
Sbjct: 217 RKRQVCFERAEQALRRLTQGPMPVVVPEATVATVTPDQNSCHAQLDTA-----GGASTPS 271
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+ + GP+ D DII+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GA
Sbjct: 272 GSPI------STCGPLTDEDIIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGA 325
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
D+TC EMAV T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDF
Sbjct: 326 DVTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDF 385
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
VD+N+GCPI+ +YK+G G L+ R+ F Q +V V
Sbjct: 386 VDINVGCPIDLVYKKGGGCALMNRSAKF---------------------QQIVRGV---- 420
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
NEV +P+TVK RTG+ + ++ H +P+
Sbjct: 421 ------------------------------NEVLDVPLTVKMRTGVQERVSLAHRLLPEL 450
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
RDWG +L+TLHGR+REQRYT+ ADW YIE+CA+
Sbjct: 451 RDWGVALVTLHGRSREQRYTRLADWPYIEQCAK--------------------------- 483
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
+ SP PL+GNGDILS+ED +++ ++GVMI RGA
Sbjct: 484 ----------------------VASPMPLFGNGDILSFEDANCAMQT--GVAGVMIARGA 519
Query: 584 LIKPWIFQEIKEKKLFDI 601
L+KPW+F EIKE++ +DI
Sbjct: 520 LLKPWLFTEIKEQRHWDI 537
>gi|344237632|gb|EGV93735.1| tRNA-dihydrouridine synthase 3-like [Cricetulus griseus]
Length = 670
Score = 347 bits (889), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 197/558 (35%), Positives = 286/558 (51%), Gaps = 137/558 (24%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P+ K + CP L + TC +G++C+F+HD ++++KP D+
Sbjct: 103 RGQNKSRPHVKPSQYDK--ERLCPSLLQES--ATCAFGDRCRFLHDVGRYLETKPADLGP 158
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F G CP + CRF +HL G N+V+E+V+ + + N L ++Q L
Sbjct: 159 RCVLFDTFGRCPYSVTCRFAGAHLGPEGQNLVQEEVVARCVHLPLVR--NGLNRALQQQL 216
Query: 175 RKHTYNFEKSEKICKE-----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
RK FE++E+ + D + C D+ +TP+
Sbjct: 217 RKRQVCFERAEQALRRLTQGPMPVVVPEATVATVTPDQNSCHAQLDTA-----GGASTPS 271
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+ + GP+ D DII+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GA
Sbjct: 272 GSPI------STCGPLTDEDIIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGA 325
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
D+TC EMAV T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDF
Sbjct: 326 DVTCGEMAVCTNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDF 385
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
VD+N+GCPI+ +YK+G G L+ R+ F Q +V V
Sbjct: 386 VDINVGCPIDLVYKKGGGCALMNRSAKF---------------------QQIVRGV---- 420
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
NEV +P+TVK RTG+ + ++ H +P+
Sbjct: 421 ------------------------------NEVLDVPLTVKMRTGVQERVSLAHRLLPEL 450
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
RDWG +L+TLHGR+REQRYT+ ADW YIE+CA+
Sbjct: 451 RDWGVALVTLHGRSREQRYTRLADWPYIEQCAK--------------------------- 483
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
+ SP PL+GNGDILS+ED +++ ++GVMI RGA
Sbjct: 484 ----------------------VASPMPLFGNGDILSFEDANCAMQT--GVAGVMIARGA 519
Query: 584 LIKPWIFQEIKEKKLFDI 601
L+KPW+F EIKE++ +DI
Sbjct: 520 LLKPWLFTEIKEQRHWDI 537
>gi|81902404|sp|Q91XI1.1|DUS3L_MOUSE RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
gi|15192726|gb|AAK84684.1| putative zinc finger protein [Mus musculus]
Length = 637
Score = 346 bits (888), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 192/548 (35%), Positives = 282/548 (51%), Gaps = 116/548 (21%)
Query: 58 KGQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 93 RGQNKSRPHVKPAHYDK--DRLCPSFLQEPA--TPCAFGDRCRFLHDVGRYLETKPADLG 148
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q
Sbjct: 149 PRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQ 206
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LRK FE++E+ S + K +++T +
Sbjct: 207 LRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPV 266
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
GP+ D D+I+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 267 PTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 326
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 327 TNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPID 386
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
+YK+G G L+ R+ F Q +V V+
Sbjct: 387 LVYKKGGGCALMNRSAKF---------------------QQIVRGVN------------- 412
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
G+L +P+TVK RTG+ + ++ H +P+ RDWG +L+TL
Sbjct: 413 ----GVL-----------------DVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTL 451
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYT+ ADW YIE+CA+
Sbjct: 452 HGRSREQRYTRLADWPYIEQCAK------------------------------------- 474
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EI
Sbjct: 475 ------------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 520
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 521 KEQRHWDI 528
>gi|301784767|ref|XP_002927798.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Ailuropoda
melanoleuca]
Length = 646
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/556 (34%), Positives = 282/556 (50%), Gaps = 130/556 (23%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK R PT K + CP L + + C +G++C+F+HD ++++KP D+
Sbjct: 103 RGQNKGRPHMKPTHYDK--NRLCPSLVQESAAK-CFFGDRCRFLHDVGRYLETKPLDLGP 159
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F G CP G+ CRF +HL G N+V+E+ ++ N L ++Q L
Sbjct: 160 RCVLFENFGRCPYGVTCRFAGAHLGPEGQNLVQEERVQ------APPVRNGLDKALQQQL 213
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKN---------QDSKVIEGREEINTPNTD 225
RK FE++E+ ++ + QDS + ++ + P T
Sbjct: 214 RKRKVRFERAEQALRQLSKGHVPGPSPEATVPEVLGAKGAPLQDSG--DAQQTLPEPGTG 271
Query: 226 DVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
+ T GP+ D D+++++ EK+++D GKLYL+PLTT GNLPFRR+CK++GAD+
Sbjct: 272 ALASGSVRT-CGPLTDEDVVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADV 330
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVD 345
TC EMAV T LL+ EWAL++RH ED+FGVQL G P +TKC +LL + VDFVD
Sbjct: 331 TCGEMAVCTNLLQGQTSEWALLRRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVD 390
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N+GCPI+ +YK+G G L+ RA F Q +V ++ L
Sbjct: 391 INVGCPIDLVYKKGGGCALMNRAAKF---------------------QQIVRGMNQVLDV 429
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
P +TVK RTG+ + N+ H +P+ RD
Sbjct: 430 P----------------------------------LTVKIRTGVQERMNLAHRLLPELRD 455
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
WGA+L+TLHGR+REQRYTK ADW+YI +C
Sbjct: 456 WGAALVTLHGRSREQRYTKLADWEYIAQC------------------------------- 484
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
SP PL+GNGDILSYED +++ ++GVM+ RGAL+
Sbjct: 485 ------------------VTAASPMPLFGNGDILSYEDANRAMQT--GVAGVMVARGALL 524
Query: 586 KPWIFQEIKEKKLFDI 601
KPW+F EIKE++ +DI
Sbjct: 525 KPWLFTEIKEQRHWDI 540
>gi|281348023|gb|EFB23607.1| hypothetical protein PANDA_017628 [Ailuropoda melanoleuca]
Length = 610
Score = 345 bits (885), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 193/556 (34%), Positives = 282/556 (50%), Gaps = 130/556 (23%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK R PT K + CP L + + C +G++C+F+HD ++++KP D+
Sbjct: 67 RGQNKGRPHMKPTHYDK--NRLCPSLVQESAAK-CFFGDRCRFLHDVGRYLETKPLDLGP 123
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F G CP G+ CRF +HL G N+V+E+ ++ N L ++Q L
Sbjct: 124 RCVLFENFGRCPYGVTCRFAGAHLGPEGQNLVQEERVQ------APPVRNGLDKALQQQL 177
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKN---------QDSKVIEGREEINTPNTD 225
RK FE++E+ ++ + QDS + ++ + P T
Sbjct: 178 RKRKVRFERAEQALRQLSKGHVPGPSPEATVPEVLGAKGAPLQDSG--DAQQTLPEPGTG 235
Query: 226 DVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
+ T GP+ D D+++++ EK+++D GKLYL+PLTT GNLPFRR+CK++GAD+
Sbjct: 236 ALASGSVRT-CGPLTDEDVVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADV 294
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVD 345
TC EMAV T LL+ EWAL++RH ED+FGVQL G P +TKC +LL + VDFVD
Sbjct: 295 TCGEMAVCTNLLQGQTSEWALLRRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVD 354
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N+GCPI+ +YK+G G L+ RA F Q +V ++ L
Sbjct: 355 INVGCPIDLVYKKGGGCALMNRAAKF---------------------QQIVRGMNQVLDV 393
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
P +TVK RTG+ + N+ H +P+ RD
Sbjct: 394 P----------------------------------LTVKIRTGVQERMNLAHRLLPELRD 419
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
WGA+L+TLHGR+REQRYTK ADW+YI +C
Sbjct: 420 WGAALVTLHGRSREQRYTKLADWEYIAQC------------------------------- 448
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
SP PL+GNGDILSYED +++ ++GVM+ RGAL+
Sbjct: 449 ------------------VTAASPMPLFGNGDILSYEDANRAMQT--GVAGVMVARGALL 488
Query: 586 KPWIFQEIKEKKLFDI 601
KPW+F EIKE++ +DI
Sbjct: 489 KPWLFTEIKEQRHWDI 504
>gi|405974568|gb|EKC39203.1| tRNA-dihydrouridine synthase 3-like protein [Crassostrea gigas]
Length = 522
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 214/592 (36%), Positives = 311/592 (52%), Gaps = 135/592 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED-DGTAKKKFKKNKQVLKGQNKA 63
G A+IK EF+ D+ L +++ K +LE+ + DG K K +KG+NK
Sbjct: 51 GFARIKSEFVRVDYKPELDTAYISQKTKDELEKGQKRQLDGDQDNGKGKKKMKVKGRNKQ 110
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
R T + K +D CP + E+ C +GEKCKF HD FM+SKP+DI C++F +G
Sbjct: 111 RPVTHI-KSKDKLCPTI---FQEKECSFGEKCKFSHDIKGFMESKPKDIGSHCFMFETYG 166
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP G+ACR+GS H+ E+ NIV ++ L E K+ V + +N+L+ +++ L K YNF+K
Sbjct: 167 KCPYGLACRYGSKHISEDFKNIVNQE-LYEKKSKV-KQVLNVLSKDLQVMLWKKRYNFDK 224
Query: 184 SEKICKENK--------------ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ ++ K+ + +K ENK+T Q + ++ +E+ P+ D ++
Sbjct: 225 ANEVVKQVQKMAQEKLDTFSKKCVTKQENKETATKSGAQSEEKVDVTQEL--PSKDAAME 282
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE 289
+E++ IK++ E +KID+ K YL+PLTTVGNLP+RR+CK +GADITCSE
Sbjct: 283 TTDESEGE-------IKLRPQETRKIDFSSKNYLAPLTTVGNLPYRRICKTYGADITCSE 335
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MA++ LL+ EWAL+KRHESEDLFGVQ+CG LT+C+QL+ E + +DF+D+N G
Sbjct: 336 MAMSMNLLQGQASEWALLKRHESEDLFGVQICGGWADTLTRCSQLINENVELDFLDLNCG 395
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +YK+G G L+ R N F EQ++
Sbjct: 396 CPIDLVYKKGEGCALIGRLNKF--------------------EQII-------------- 421
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+G S L +P+TVK RTGI + NI H +PK RDWG S
Sbjct: 422 ---RGMNSVL------------------DVPLTVKMRTGIFDNKNIAHTVIPKLRDWGVS 460
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
++TLHGR+REQRYT+ ADWDYI +CA
Sbjct: 461 MVTLHGRSREQRYTRLADWDYINQCA---------------------------------- 486
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
+ P P++GNGDILSYED LK + ++G M+ R
Sbjct: 487 ---------------EAGKPMPVFGNGDILSYEDLDRHLKNT-KVTGCMMAR 522
>gi|355703026|gb|EHH29517.1| tRNA-dihydrouridine synthase 3-like protein [Macaca mulatta]
Length = 637
Score = 342 bits (878), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 192/585 (32%), Positives = 290/585 (49%), Gaps = 139/585 (23%)
Query: 29 ETDKRKLEELEVEDDGTAK----KKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDST 84
E + +LE+ + ED T + ++ + ++ +GQNK R K
Sbjct: 71 EAKRIRLEDGQTEDGQTEEAAEPREQPQTQKRARGQNKGRPHESAAK------------- 117
Query: 85 LEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N
Sbjct: 118 ----CFFGDRCRFLHDVRRYLETKPADLGPRCVLFQTFGRCPYGVTCRFAGAHLGPEGQN 173
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
+V+E++ + N L ++Q LRK FE++E+ + + S+ +
Sbjct: 174 LVQEELAA--RGAQPPPVRNGLDKALQQQLRKREVLFERAEQALR--RFSQGQPPGPTPA 229
Query: 205 CKNQDSKVIEGR--------EEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKID 256
+ EG +++ T GP+ D D+++++ EKK++D
Sbjct: 230 AAVPEGTAAEGAPRQGNCGAQQVPTGLGTSTPPSSPVRTCGPLTDEDVVRLRPCEKKRLD 289
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH+ ED+F
Sbjct: 290 IRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDVF 349
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLC 376
GVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ F
Sbjct: 350 GVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKF----- 404
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
Q +V ++ L P
Sbjct: 405 ----------------QQIVRGMNQVLDVP------------------------------ 418
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 419 ----LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEEC-- 472
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
+ SP PL+GNG
Sbjct: 473 -----------------------------------------------VKAASPMPLFGNG 485
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
DILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 486 DILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 528
>gi|410911856|ref|XP_003969406.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Takifugu rubripes]
Length = 622
Score = 342 bits (877), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 211/578 (36%), Positives = 299/578 (51%), Gaps = 132/578 (22%)
Query: 27 VNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPED---CYCPFLKDS 83
V E D +K +L+ ED K K + + +GQNK+R T T E+ C F ++
Sbjct: 65 VEEPDAKK-AKLDHED---RNKDRKADGKRFRGQNKSRPHTKPTTYEEKRLCLSVFKEN- 119
Query: 84 TLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
+ C +GEKC F H+ + +M +KP DI E+CY++ G C G+ CRF +H +
Sbjct: 120 ---KECPFGEKCHFHHNISDYMSTKPADIGERCYLYEAFGKCAYGLTCRFAKAHTTPDFK 176
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
+ DV+K + K N L+ +++ LRKH+ +F+KS + K +K ++K +
Sbjct: 177 TLENADVIKACEGKTSIK--NSLSKDLQNRLRKHSVDFKKSAEYLKTLSNNKEKSKQQGN 234
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
+VI EI TP +K GP+ D D+IK++ E+K++D+ KLYL
Sbjct: 235 DLFLDQLQVIP---EILTP-----VKT-----VGPLTDVDVIKLRPCERKQVDFNDKLYL 281
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTT GNLPFRR+CK++GADITC EMA+ T LL+ EWAL+KRHESED+FGVQ+ G
Sbjct: 282 APLTTCGNLPFRRVCKRFGADITCGEMAMCTNLLQGQQSEWALLKRHESEDVFGVQIEGC 341
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
P +T+C +L+ VDFVD+N GCPI+ ++K+G G GL+ R F + G N YVL
Sbjct: 342 FPDTMTRCAELINNNTEVDFVDINSGCPIDLVFKKGGGCGLMTRTRKFEEIVKGMN-YVL 400
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
S L + +
Sbjct: 401 D----------------------------------------------------SPLTVKI 408
Query: 444 KTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503
+ TG+H+ +NI H +P+ + WG S+I LHGR+REQRYTK ADWDYI C++L
Sbjct: 409 R--TGVHEKSNIAHKLIPEMKKWGISMIALHGRSREQRYTKLADWDYISTCSKL------ 460
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
SP PL+GNGDILSYED
Sbjct: 461 -------------------------------------------ASPVPLFGNGDILSYED 477
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ K +SG+MI RGALIKPWIF EIKE++ +DI
Sbjct: 478 AVKA--KETGVSGIMIARGALIKPWIFTEIKERRHWDI 513
>gi|260828450|ref|XP_002609176.1| hypothetical protein BRAFLDRAFT_92533 [Branchiostoma floridae]
gi|229294531|gb|EEN65186.1| hypothetical protein BRAFLDRAFT_92533 [Branchiostoma floridae]
Length = 578
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 196/527 (37%), Positives = 266/527 (50%), Gaps = 156/527 (29%)
Query: 77 CP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP FLKD +C++GE+C+F H ++ +KP D+ ++CYVF HG CP GI CRF
Sbjct: 97 CPSFLKDP---DSCQFGERCRFSHSVEEYLANKPADLGDRCYVFDTHGTCPFGITCRFAK 153
Query: 136 SHLDENGGNIVKEDVLK-EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKAS 194
H D+ NIV DV E K T T N L +++ LRK Y F KS++
Sbjct: 154 CHTDDQNENIVNPDVYSPEAKPT----TSNQLPKDIQTSLRKKQYKFPKSDEY------- 202
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
++ K D D IK+ E+KK
Sbjct: 203 -----------------------------------LRAIGKLSTAQDEDAIKLLPRERKK 227
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+++ KLYL+PLTTVGNLPFRR+CK GADITC EMA+A+ LL+ EWAL+KRH+SED
Sbjct: 228 LEFADKLYLAPLTTVGNLPFRRICKGLGADITCGEMAMASNLLQGQSSEWALLKRHQSED 287
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+FGVQ+CG++P V++ +LL + ++VDFVDVN+GCPI+ ++K+G G L+ R
Sbjct: 288 VFGVQICGSHPEVMSHVAELLNDTISVDFVDVNVGCPIDLVFKRGGGCALMGR------- 340
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
LTK Q V+ M
Sbjct: 341 --------LTKFEQ----------------------------------------VVKGMI 352
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+TVK RTGI+++ + +P RDWG SL+TLHGR+REQRYTK ADWDYI +C
Sbjct: 353 GMLDVPLTVKMRTGIYEEKPFAYRVVPHLRDWGVSLVTLHGRSREQRYTKLADWDYISEC 412
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A + SP PL+G
Sbjct: 413 A-------------------------------------------------KAASPMPLFG 423
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
NGDILS+ED ++S ++G+MI RGALIKPWIF EIKE++ +DI
Sbjct: 424 NGDILSFEDANRH-RESTGVAGLMIARGALIKPWIFTEIKEQRHWDI 469
>gi|77917548|ref|NP_001030095.1| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Rattus
norvegicus]
gi|110808213|sp|Q3KRC5.1|DUS3L_RAT RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
gi|77415407|gb|AAI05781.1| Dihydrouridine synthase 3-like (S. cerevisiae) [Rattus norvegicus]
Length = 640
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 185/547 (33%), Positives = 276/547 (50%), Gaps = 114/547 (20%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P K + CP L + C +G++C+F+HD ++++KP D+
Sbjct: 96 RGQNKSRPHMKPAHYDK--ERLCPSLLQES-ATPCAFGDRCRFLHDVGRYLETKPADLGP 152
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q L
Sbjct: 153 HCVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQL 210
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK FE++E+ + K +++ D +
Sbjct: 211 RKRQVCFERAEQALSHLTQGPMPTIAPESTVATLTPKHSSCHVQLDNVGGDGARQGSPVP 270
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ D D+++++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T
Sbjct: 271 TCGPLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCT 330
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 331 NLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDL 390
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
+YK+G G L+ R+ F + G N + +DV
Sbjct: 391 VYKKGGGCALMNRSAKFQQIVRGMN-----------------EVLDV------------- 420
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
P+TVK RTG+ + ++ H +P+ R+WG +L+TLH
Sbjct: 421 -------------------------PLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLH 455
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYT+ ADW YIE+CA+
Sbjct: 456 GRSREQRYTRLADWPYIEQCAK-------------------------------------- 477
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIK
Sbjct: 478 -----------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIK 524
Query: 595 EKKLFDI 601
E++ +DI
Sbjct: 525 EQRHWDI 531
>gi|149028168|gb|EDL83606.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_c
[Rattus norvegicus]
Length = 640
Score = 338 bits (867), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 185/547 (33%), Positives = 276/547 (50%), Gaps = 114/547 (20%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P K + CP L + C +G++C+F+HD ++++KP D+
Sbjct: 96 RGQNKSRPHMKPAHYDK--ERLCPSLLQES-ATPCAFGDRCRFLHDVGRYLETKPADLGP 152
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q L
Sbjct: 153 HCVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQL 210
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK FE++E+ + K +++ D +
Sbjct: 211 RKRQVCFERAEQALSHLTQGPMPTIAPESTVATLTPKHSSCHVQLDNVGGDGAGQGSPVP 270
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ D D+++++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T
Sbjct: 271 TCGPLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCT 330
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 331 NLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDL 390
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
+YK+G G L+ R+ F + G N + +DV
Sbjct: 391 VYKKGGGCALMNRSAKFQQIVRGMN-----------------EVLDV------------- 420
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
P+TVK RTG+ + ++ H +P+ R+WG +L+TLH
Sbjct: 421 -------------------------PLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLH 455
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYT+ ADW YIE+CA+
Sbjct: 456 GRSREQRYTRLADWPYIEQCAK-------------------------------------- 477
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIK
Sbjct: 478 -----------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIK 524
Query: 595 EKKLFDI 601
E++ +DI
Sbjct: 525 EQRHWDI 531
>gi|195384997|ref|XP_002051195.1| GJ13589 [Drosophila virilis]
gi|194147652|gb|EDW63350.1| GJ13589 [Drosophila virilis]
Length = 590
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 203/598 (33%), Positives = 291/598 (48%), Gaps = 124/598 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKN---KQVLKGQN 61
G+ IK E+++ + + E D + ED G+ + K K+ +GQN
Sbjct: 4 GICYIKPEYLLAEANSGPNSEVNVSVDGASNKRKHAEDAGSPNESGNKRGNKKERKRGQN 63
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
K R P F + C L D C C++VHD F+ +K D+ + CYV+
Sbjct: 64 KNR-PVFKDERYSHLCHSLIDGAGGPPCTV-PNCRYVHDLEAFVAAKGVDLGDVCYVYAT 121
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYC G+ CRF +H D G N+ E + T N +++E++ LRKH Y+F
Sbjct: 122 KGYCGRGVTCRFAKAHTDAQGRNMKAE----PYDEQAAQTTCNGISSELQVRLRKHDYDF 177
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
+++++ K+ + + +D + Q + I P+ + E T G +D
Sbjct: 178 SRTKELIKQAE----KLRDVRKQQEQQKKEEI--------PDDKLAVTTAERTPIGSAID 225
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
+ K ID++ KL LSPLTTVGNLPFRR+CK++GADITC EMA A LLK
Sbjct: 226 DNPNGRDAQRKPVIDFREKLVLSPLTTVGNLPFRRICKEFGADITCGEMACAVPLLKGLG 285
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
QEWAL KRHESED+FGVQ+CGNNP V+T+ ++L E VD++D+N+GCPI+ IY+QG G
Sbjct: 286 QEWALTKRHESEDIFGVQVCGNNPNVITQAAEVLHETARVDYIDLNIGCPIDLIYQQGGG 345
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L++R N+ + + C L + + F K +G
Sbjct: 346 SALMRRTNILEL--------TVRSCAALSDR--------------LPFTVKMRTG----- 378
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
I+ D ++ H +P WGA+ +TLHGR+REQR
Sbjct: 379 ---------------------------IYADKSVAHELLPLVEQWGAAAVTLHGRSREQR 411
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
YT+QA+W YIE+CA + R+
Sbjct: 412 YTRQANWAYIEQCAA-------------------------------QARHM--------- 431
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
P+ GNGDI+SYEDY E +P +S VMIGRGALIKPWIFQEIK++K +
Sbjct: 432 ---------PVIGNGDIISYEDYVERRALAPHVSSVMIGRGALIKPWIFQEIKQQKAW 480
>gi|348550668|ref|XP_003461153.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Cavia porcellus]
Length = 641
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 192/586 (32%), Positives = 286/586 (48%), Gaps = 137/586 (23%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQ 87
E + +LE+ + E K+ + K+ +GQNK+R T+ ++ CP L + +
Sbjct: 71 EAKRIRLEDGQPEAAVEPGKQPQAPKRA-RGQNKSRPHMKPTQYDQNRLCPSLIQESPAK 129
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK 147
C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL G N+V
Sbjct: 130 -CFFGDRCRFLHDVVRYLETKPPDLGPRCVLFETFGRCPYGVTCRFAGAHLGPEGQNLVL 188
Query: 148 EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK------------ENKASK 195
E++L + + N L +++ LRK FE++E+ + +
Sbjct: 189 EELLARGAHMPPLR--NALDKTLQRQLRKRQVRFERAEQALRGLSQGPVQAAAVAELTAP 246
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
+ + C QD + + T GP+ D D ++++ EKK++
Sbjct: 247 EGDSGQNHCTALQDPAELGAGSPVQT--------------CGPLTDEDTVRLRPCEKKRL 292
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
D KLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T LL+ EWAL++RH ED+
Sbjct: 293 DISDKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTNLLQGQTSEWALLRRHPCEDI 352
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
FGVQL G P + KC +LL + VDFVD+N+GCPI+ +YK+G G L+ R F
Sbjct: 353 FGVQLEGGFPDTMAKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRPAKF---- 408
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
Q +V + L P
Sbjct: 409 -----------------QQIVRGMSQVLDVP----------------------------- 422
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
+TVK RTG+ + N+ H +P+ R WGA+L+TLHGR+REQRYTK ADW YI +C
Sbjct: 423 -----LTVKIRTGVQEHANLAHRLLPELRAWGAALVTLHGRSREQRYTKLADWQYIGQC- 476
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ SP PL+GN
Sbjct: 477 ------------------------------------------------VEAASPMPLFGN 488
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GDILSYED + K ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 489 GDILSYEDANRA--KQTGVAGIMIARGALLKPWLFTEIKEQRHWDI 532
>gi|427782685|gb|JAA56794.1| Putative trna-dihydrouridine synthase translation [Rhipicephalus
pulchellus]
Length = 553
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 204/598 (34%), Positives = 289/598 (48%), Gaps = 157/598 (26%)
Query: 6 VAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG 65
+A+IK EF+ + + + + +D K + E K L+GQN +R
Sbjct: 1 MARIKPEFVKQSQPRHVEAAFIAPSDHTKSGPTDGEQPPLKK---------LRGQNHSR- 50
Query: 66 PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYC 125
P +P+ F + E +C +GE+C++ HD F+ +KP D+ ++C + HG C
Sbjct: 51 PHHRPQPQSAKLCF-RHLAKEGSCPHGEQCRYSHDLQAFLSAKPADLGDKCPLVEAHGGC 109
Query: 126 PMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
G CRF +H GG + T G N L+ E++Q LRK ++F SE
Sbjct: 110 RYGAVCRFAEAH---PGGATAAPHSVDGISGTPGE--CNALSKELQQALRKRQFDFGPSE 164
Query: 186 KICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDII 245
KI KE + N T+ G L+ I
Sbjct: 165 KILKEVSSGAAVNGVTN----------------------------------GQTLNECID 190
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
+ E KK+D++GKLYL+PLTTVGNLPFRR+CK++GADITC EMA+A LL+ P EWA
Sbjct: 191 DVGPEEPKKVDFKGKLYLAPLTTVGNLPFRRVCKEFGADITCGEMAMAANLLQGQPSEWA 250
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
L+KRH SEDLFGVQLCG +P V+T+C QLL+++ VDFVD+N+GCPI+F+YK+G+GSGL+
Sbjct: 251 LLKRHSSEDLFGVQLCGAHPDVMTRCAQLLKDKCNVDFVDINMGCPIDFVYKKGAGSGLM 310
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
RA + G +V +D+ L
Sbjct: 311 GRAKKLSEIVYG-----------------MVGVLDIPL---------------------- 331
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF--RDWGASLITLHGRTREQRYT 483
TVK R G+H+ I H + + +LIT+H R+REQRYT
Sbjct: 332 ----------------TVKMRAGMHEGRPIAHQVIAQLVKAPRKPALITVHPRSREQRYT 375
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K ADW Y+ +CAQ
Sbjct: 376 KSADWAYLNRCAQ----------------------------------------------- 388
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+P P++G+GD+LS+ED + L ++ S+SG+MI RGALIKPWIF EIKEK+ +DI
Sbjct: 389 --AANPIPVFGSGDVLSWEDAEKRLSET-SVSGLMIARGALIKPWIFTEIKEKRHWDI 443
>gi|156387454|ref|XP_001634218.1| predicted protein [Nematostella vectensis]
gi|156221299|gb|EDO42155.1| predicted protein [Nematostella vectensis]
Length = 570
Score = 328 bits (842), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 198/591 (33%), Positives = 292/591 (49%), Gaps = 156/591 (26%)
Query: 13 FIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKP 72
+ V++H ++ + +N+T + DG +KK KKN+ + + + + + P +K
Sbjct: 21 YSVKNHSQMRKVNPLNDTQE--------HTDGPPRKK-KKNRGMNRQRPRDQRPDNSSK- 70
Query: 73 EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACR 132
C F + + C G+ C + HD F+++K DI ++C FL+ G CP GI+CR
Sbjct: 71 ---LCSF---AARGEECTRGDSCFYGHDPQKFLETKEPDIGKECVNFLKSGKCPYGISCR 124
Query: 133 FGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENK 192
+ H + +I+ E+ +K T N LA +V+ LRK Y F +S +
Sbjct: 125 YWKHHTTADLKSIINEEFFSHYKE----DTSNNLAKDVQISLRKKKYMFPRSNAYLELLS 180
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEK 252
++N N T V++ G V + D+IK++ EK
Sbjct: 181 NAQNVNTQTG------------------------VVRTH-----GCVTNEDLIKLRTQEK 211
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+ID+ KLYL+PLTT+GNLPFRR+CK++GADITC EMA+ T LL+ EWAL+KRH S
Sbjct: 212 KRIDFSDKLYLAPLTTIGNLPFRRICKQYGADITCGEMAMCTNLLQGQQSEWALVKRHSS 271
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED+FGVQLCG P +TKC +LL+++ VDF+D+N GCPI+ ++ +G+GS L++R
Sbjct: 272 EDIFGVQLCGAFPDTMTKCAELLQKETDVDFIDINTGCPIDLVFNKGAGSALMER----- 326
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
G LQ+ ++
Sbjct: 327 --------------------------------------------KGKLQQ------IVQG 336
Query: 433 MNEVSSLPITVKTRTGIHKDNNI--IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
M V +P+TVK R GIH H + RDWG ++T+HGR+REQRYTK ADWDY
Sbjct: 337 MKSVIDIPLTVKIRAGIHDKKYTWNAHKLVGNLRDWGTDMVTIHGRSREQRYTKSADWDY 396
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + A+L SP
Sbjct: 397 ISEVAKL-------------------------------------------------ASPM 407
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P++GNGDILS+ED + +K ++GVMI RGA+IKPWIF EIKE++ +DI
Sbjct: 408 PVFGNGDILSFEDAMQH-RKQAGVAGVMIARGAIIKPWIFTEIKEQRHWDI 457
>gi|390359026|ref|XP_793440.2| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Strongylocentrotus purpuratus]
Length = 628
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 193/518 (37%), Positives = 268/518 (51%), Gaps = 124/518 (23%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKE 148
C++G+KCKF HD M K DI+ +C F + G CP G+ CRFG +H+D+N NIV E
Sbjct: 121 CRFGDKCKFSHDIQKLMAGKAPDINPRCINFDKFGSCPYGMLCRFGGAHIDDNLKNIVDE 180
Query: 149 DVLKEWKNTVGNKTV--NMLANEVRQDLRKHTYNFEKSEKICKE---NKASKNENKDTDD 203
+ +KE G K V N+L+ +++ LRK +F+KS++ + K N +
Sbjct: 181 EKVKE----TGGKCVVRNLLSKDLQIQLRKRNVHFKKSDQYMRTLDTRKKESNSKRPEGP 236
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
CK+ + + P + D +G V D D+IK++ EKKK+D + KL L
Sbjct: 237 GCKDHNES-----PTVVMPTSGDA-----HNHAGTVTDADVIKLRPEEKKKLDVKDKLLL 286
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTTVGNLPFR +CKK GADITC EMA+ T LL+ EWAL++RH SED+FGVQLCG
Sbjct: 287 APLTTVGNLPFRAVCKKLGADITCGEMAMCTNLLQGQSSEWALLRRHPSEDIFGVQLCGG 346
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
P +T+C +LL +++ +DF+D+N+GCPI+ +Y +G+GSGL+ R F
Sbjct: 347 FPDTMTRCAELLNDRLDIDFIDINVGCPIDLVYHKGAGSGLMNRMGKF------------ 394
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
Q +V + L P+ TV
Sbjct: 395 ---------QEIVRGMSSVLDIPL----------------------------------TV 411
Query: 444 KTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503
K RTG+H DN + H + + DWGAS++T+HGRTREQRY+K ADWDY++ C Q
Sbjct: 412 KMRTGVHNDNPVAHKIVRRIYDWGASVVTVHGRTREQRYSKLADWDYLKDCVQ------- 464
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
P P GNGDILSYED
Sbjct: 465 ------------------------------------------AADPHPFIGNGDILSYED 482
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ ++ +G MI RGALIKPWIF EIKE++ +DI
Sbjct: 483 -SNFFREQSGATGQMIARGALIKPWIFTEIKEQRHWDI 519
>gi|427794589|gb|JAA62746.1| Putative trna-dihydrouridine synthase translation, partial
[Rhipicephalus pulchellus]
Length = 554
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 195/547 (35%), Positives = 271/547 (49%), Gaps = 148/547 (27%)
Query: 57 LKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQC 116
L+GQN +R P +P+ F + E +C +GE+C++ HD F+ +KP D+ ++C
Sbjct: 44 LRGQNHSR-PHHRPQPQSAKLCF-RHLAKEGSCPHGEQCRYSHDLQAFLSAKPADLGDKC 101
Query: 117 YVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
+ HG C G CRF +H GG + T G N L+ E++Q LRK
Sbjct: 102 PLVEAHGGCRYGAVCRFAEAH---PGGATAAPHSVDGISGTPGE--CNALSKELQQALRK 156
Query: 177 HTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
++F SEKI KE + N T+
Sbjct: 157 RQFDFGPSEKILKEVSSGAAVNGVTN---------------------------------- 182
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
G L+ I + E KK+D++GKLYL+PLTTVGNLPFRR+CK++GADITC EMA+A L
Sbjct: 183 GQTLNECIDDVGPEEPKKVDFKGKLYLAPLTTVGNLPFRRVCKEFGADITCGEMAMAANL 242
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ P EWAL+KRH SEDLFGVQLCG +P V+T+C QLL+++ VDFVD+N+GCPI+F+Y
Sbjct: 243 LQGQPSEWALLKRHSSEDLFGVQLCGAHPDVMTRCAQLLKDKCNVDFVDINMGCPIDFVY 302
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K+G+GSGL+ RA + G +V +D+ L
Sbjct: 303 KKGAGSGLMGRAKKLSEIVYG-----------------MVGVLDIPL------------- 332
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF--RDWGASLITLH 474
TVK R G+H+ I H + + +LIT+H
Sbjct: 333 -------------------------TVKMRAGMHEGRPIAHQVIAQLVKAPRKPALITVH 367
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
R+REQRYTK ADW Y+ +CAQ
Sbjct: 368 PRSREQRYTKSADWAYLNRCAQ-------------------------------------- 389
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+P P++G+GD+LS+ED + L ++ S+SG+MI RGALIKPWIF EIK
Sbjct: 390 -----------AANPIPVFGSGDVLSWEDAEKRLSET-SVSGLMIARGALIKPWIFTEIK 437
Query: 595 EKKLFDI 601
EK+ +DI
Sbjct: 438 EKRHWDI 444
>gi|395750277|ref|XP_002828550.2| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Pongo
abelii]
Length = 637
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 192/595 (32%), Positives = 287/595 (48%), Gaps = 159/595 (26%)
Query: 29 ETDKRKLEELEVED----DGTAKKKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLK 81
E + +LE+ + D +G + + ++ +GQNK R PT K + CP L
Sbjct: 71 EAKRIRLEDGQTADGQTEEGAEPGEQPQTQKRARGQNKGRPHVKPTHYDK--NRLCPSLI 128
Query: 82 DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141
+ + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL
Sbjct: 129 QESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAGAHLGPE 187
Query: 142 GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----------- 190
G N+V+E++ + N L ++Q LRK FE++E+ +
Sbjct: 188 GQNLVQEELAA--RGAQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGQPPGPTP 245
Query: 191 ----NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIK 246
+ + E D C Q G +TP + V GP+ D D+++
Sbjct: 246 AAAIPEGTAAEGAPRQDNCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDVVR 296
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL
Sbjct: 297 LRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWAL 356
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+ +
Sbjct: 357 LKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKVA------ 410
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+D +DV L I +G+ +R N+
Sbjct: 411 ----------------------------ALDVLDVPLTVKIR--------TGVQERVNLA 434
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
+ +P+ RDWG +L+TLHGR+REQRYTK A
Sbjct: 435 HRL------------------------------LPELRDWGVALVTLHGRSREQRYTKLA 464
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW YIE+C Q
Sbjct: 465 DWQYIEECVQ-------------------------------------------------A 475
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 476 ASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 528
>gi|449671032|ref|XP_002163197.2| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Hydra
magnipapillata]
Length = 557
Score = 319 bits (817), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 191/529 (36%), Positives = 257/529 (48%), Gaps = 159/529 (30%)
Query: 74 DCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACR 132
D CP FLK + C++ CKF H+ ++ +P DIS C F+ GYC GI CR
Sbjct: 78 DRLCPNFLKS----EKCQFEANCKFSHNVKNYLDKRPPDISNSCINFITSGYCKYGIECR 133
Query: 133 FGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENK 192
+G HL + NI+ E+ K++ +GN+ N L+ E +RK Y F
Sbjct: 134 YGKEHLTADFKNIIDEEKHKKYLANLGNE--NALSKESMLAIRKKKYQF----------- 180
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEK 252
P D +K E T + N EK
Sbjct: 181 -----------------------------PRADCYLKSSSE-------GTHNFLVNNREK 204
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
KKID+ KLYL+PLTTVGNLPFRR+CK +GADITC EMA+AT LL+ EWAL+KRH S
Sbjct: 205 KKIDFSNKLYLAPLTTVGNLPFRRVCKNFGADITCGEMAMATNLLQGHQSEWALVKRHSS 264
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED+FGVQLCG P + K ++L ++ +DF+D+N+GCPI+ ++K+G GS L+ R
Sbjct: 265 EDIFGVQLCGGYPDSMAKAVEMLNKECQIDFIDINMGCPIDLVFKKGEGSALMGR----- 319
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+ LEE + G++Q
Sbjct: 320 --------------MKKLEEVV----------------------KGMVQ----------- 332
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
VS +PIT+K RTGI ++ +I H +P ++WG LITLHGR+REQRYTK ADWDYI
Sbjct: 333 ---VSDVPITIKMRTGIQENKSIAHKIIPLVKEWGVDLITLHGRSREQRYTKAADWDYIN 389
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+CA+ L P P
Sbjct: 390 QCAK-------------------------------------------------LSHPVPF 400
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+GNGDI SYED + +++ + G+MI RGALIKPWIF EIKEK+ +DI
Sbjct: 401 FGNGDIFSYEDAIKR-QENFGVDGLMIARGALIKPWIFTEIKEKRHWDI 448
>gi|391336316|ref|XP_003742527.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
[Metaseiulus occidentalis]
Length = 562
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 202/592 (34%), Positives = 294/592 (49%), Gaps = 162/592 (27%)
Query: 13 FIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKP 72
++V + + L + V+ K KL +DDG +K +KGQNK+R +
Sbjct: 21 YVVPEKQRELDLNFVSVAVKDKL----ADDDGNRPRK------KIKGQNKSRPHHQSAEN 70
Query: 73 EDCYC-PFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIAC 131
C F+ S C + E CK+ HD ++++K DI ++CY+F ++G C + C
Sbjct: 71 ASKLCFKFIAGS-----CPH-ENCKYSHDTQKYLETKEADIGDRCYLFEKYGRCRYAMTC 124
Query: 132 RFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKEN 191
RF SHL ++G N ++ +K N L+ E++ LRK FEK
Sbjct: 125 RFSESHL-KDGVNQTNDET---YKGIESEDEKNTLSRELQIKLRKRDCAFEK-------- 172
Query: 192 KASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSE 251
T D K SK D ++ +++T D++ IK++ E
Sbjct: 173 ---------TKDPLKKIASK--------------DFLRYKDDTAE----DSERIKLRLEE 205
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
+K +D++GKLYL+PLTTVGNLPFRR+CK+ GADITC EMA+AT LL+ EWAL++RH
Sbjct: 206 RKAVDFRGKLYLAPLTTVGNLPFRRICKEMGADITCGEMAMATNLLQGQTSEWALLRRHS 265
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
SED+FG+QLCG VL++C QLLEEQ +VDF+D+N+GCPI+FIYK+GSGSGL+ R+
Sbjct: 266 SEDIFGIQLCGGYADVLSRCAQLLEEQCSVDFIDLNMGCPIDFIYKKGSGSGLMTRS--- 322
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VN E +Y
Sbjct: 323 ---------------------------TRVN-----EIVY-------------------- 330
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW--GASLITLHGRTREQRYTKQADWD 489
M E S++P+T+K R G+ ++ NI H + + W SL T+HGR+REQRYTK A+WD
Sbjct: 331 AMTETSTIPLTMKMRAGVQENKNIAHRIIQDLKPWMNRISLFTVHGRSREQRYTKLANWD 390
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
YI +C + Q
Sbjct: 391 YIGECVK------------------------------------------------QSHPE 402
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++G+GD+LS+EDY S+ + GV++ RGALIKPW+F EIKE++ +DI
Sbjct: 403 IAIFGSGDVLSFEDYERSVNDY-GVDGVLLARGALIKPWLFTEIKERRHWDI 453
>gi|358254974|dbj|GAA56664.1| tRNA-dihydrouridine synthase 3 [Clonorchis sinensis]
Length = 499
Score = 312 bits (799), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 193/538 (35%), Positives = 267/538 (49%), Gaps = 130/538 (24%)
Query: 68 FVTKPEDCYCPFLKDSTL-EQTCKYGEK-CKFVHDKNVFMKSKPEDISEQCYVFLQHGYC 125
+V P C +STL + C + E C++ HD + SK DIS C V G C
Sbjct: 6 YVITPFPEPCSNENNSTLVSRACPFVENGCRYSHDVEAALASKRPDISGDCPVLASLGRC 65
Query: 126 PMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
G CR+ SSH + + + + + N+ L EVR L + Y+F++++
Sbjct: 66 VAGPFCRWASSHSMLDVSAVATNEATESYHNS--------LTPEVRTLLYRRQYDFKRAD 117
Query: 186 KICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDII 245
I ++ + NK D N V PN + + + G + D D+I
Sbjct: 118 AITRKYSIA---NKPHD----NHSGAV---------PNGEPADGLDLVPRIGMITDEDLI 161
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
K + EKK+ID+ KLYL+PLTTVGNLPFRR+CK++GA+ITC EMA+AT+LL+ EWA
Sbjct: 162 KPRPREKKQIDFVNKLYLAPLTTVGNLPFRRVCKRFGAEITCGEMALATQLLQGRQSEWA 221
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
L++RHESEDLFGVQLCG + +T+ QL++EQ VDF+DVN GCPI+ I+++G+GSGLL
Sbjct: 222 LLRRHESEDLFGVQLCGGHIDTMTRAAQLIDEQCEVDFIDVNCGCPIDMIWRKGAGSGLL 281
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
Q GS L
Sbjct: 282 QH------------------------------------------------GSRLESIVRG 293
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
+ SV+T +TVK R+GI + N H +P R G SLIT+HGR+REQRYTK
Sbjct: 294 MDSVLTTAQ------VTVKLRSGIREGKNTAHQLIPGLRQAGVSLITVHGRSREQRYTKL 347
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADWDY+ +CA +
Sbjct: 348 ADWDYVRQCA-------------------------------------------------E 358
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ P P++GNGDILS EDY + K+ +SGVMI RGALIKPW+F EI++ + +DI A
Sbjct: 359 IARPTPVFGNGDILSLEDYM-THKECSGVSGVMIARGALIKPWLFTEIRDCRTWDISA 415
>gi|242020724|ref|XP_002430802.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
gi|212515999|gb|EEB18064.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]
Length = 622
Score = 306 bits (783), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 202/620 (32%), Positives = 304/620 (49%), Gaps = 140/620 (22%)
Query: 6 VAKIKQEFIVEDHVKVL----SIECVNETDKRKLEELEVEDDGT--------AKKKFKKN 53
+A IK +F+V+D ++ L SI+ E + ++ ++++D T KKF KN
Sbjct: 11 IALIKPQFLVKDEIESLKNTSSIKEEGEDGETPDKKAKLDNDTTNNETPNKSKNKKFHKN 70
Query: 54 KQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGE--KCKFVHDKNVFMKSKPED 111
+ +K RG + + C L D + E +CK++HD N F++SKP D
Sbjct: 71 PR-----HKGRGRHSIY---ENLCKTLIDVPVNAPNPVCESLRCKYLHDVNKFLQSKPPD 122
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
I +C+VF G+CP GI+CRFG+ H+ ENG NIV E + ++ V K +N ++
Sbjct: 123 IGNECHVFKVRGHCPKGISCRFGNEHVTENGRNIVDESIKAHYEKNVP-KIINFYTKDIE 181
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV-----IEGREEINTPN--- 223
DLRK TY+F+KSE++ + K + +S + I+ E+I+ P
Sbjct: 182 NDLRKRTYDFKKSEEVL--DVLPKVKPPPPVPPFGPFNSTIWGLGEIDFTEDIDVPTISP 239
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+D I E GP D D+ K+ EKKKIDW+ KLYL+PLT GNLPFRR+CK++GA
Sbjct: 240 VNDTIPPLIEESIGPCPDDDLFKLHLQEKKKIDWRDKLYLAPLTNFGNLPFRRICKEFGA 299
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
D+TCSE VA +L+S P EW L KRHE+E+LFG+QL GNNP+++T+C QLLEE+ VDF
Sbjct: 300 DVTCSETVVANSILQSQPFEWLLTKRHETEELFGIQLFGNNPFIMTRCGQLLEEKTNVDF 359
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
+D+ +G P + + + + ++R + + +C
Sbjct: 360 IDICIGSPNDTMVRPRGTTSQVRREKVVE---------TIVRC----------------- 393
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
L R + L +T TR G + D I + F+P +
Sbjct: 394 ----------------LSRVSSLPLTVT-------------TRLGDYSDEKISNKFLPNY 424
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+ SL+T+ GR RE TKQ DW Y+ AQ
Sbjct: 425 KSCEISLLTVQGRNRE---TKQMDWKYVNDLAQ--------------------------- 454
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
SP +YG D+ SY DY + + P++SGV++ RGA
Sbjct: 455 ----------------------KVSPVKVYGLSDVFSYTDYLDIQENYPNLSGVLLSRGA 492
Query: 584 LIKPWIFQEIKEKKLFDIYA 603
L+KPWIF E+KE++ +DI +
Sbjct: 493 LVKPWIFSELKEQRDWDISS 512
>gi|270007852|gb|EFA04300.1| hypothetical protein TcasGA2_TC014592 [Tribolium castaneum]
Length = 548
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 201/347 (57%), Gaps = 104/347 (29%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
IDW+ KL LSPLTTVGNLPFRR+CK++GAD+TC EMA+ + LL+ +PQEWAL+KRH SED
Sbjct: 197 IDWRDKLVLSPLTTVGNLPFRRICKEFGADVTCGEMAMCSSLLQGAPQEWALVKRHHSED 256
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+FGVQLC NNP++LTKC Q+L+++ +DF+D+NLGCPIE +YK+G G GLL+R
Sbjct: 257 IFGVQLCANNPHLLTKCGQVLQQEAEIDFIDLNLGCPIELVYKEGGGCGLLRRQR----- 311
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
VL C I ++
Sbjct: 312 -------VLESC-------------------------------------------IKNLS 321
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
++ ++P+TVKTRTG++ + N+ H PKFRDWGASLIT+HGR+REQRYTK ADW YI +
Sbjct: 322 QLLTIPMTVKTRTGVYSNENLAHILAPKFRDWGASLITIHGRSREQRYTKLADWTYIRQV 381
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
AQ +P P+ G
Sbjct: 382 AQ-------------------------------------------------AAAPLPVLG 392
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
NGD+LSYEDY + + P ++GVMIGRGALIKPWIF EIKE+KL+DI
Sbjct: 393 NGDVLSYEDYKIARETCPELAGVMIGRGALIKPWIFTEIKEQKLWDI 439
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 112/193 (58%), Gaps = 8/193 (4%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
M SG+ KIK EFI+ + + L++ECV++ DKRKL E + K K K+ L+GQ
Sbjct: 1 MGDSGICKIKPEFILTERPRELALECVSDKDKRKLAENDETPPEKKPKLSKSEKKKLRGQ 60
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEK--CKFVHDKNVFMKSKPEDISEQCYV 118
NK+RGPTF E C L + ++ + E+ C+F+HD + ++K KP+DI E CY
Sbjct: 61 NKSRGPTFRCTRETELCNTLINLSIGEKAPKCERKNCQFLHDVDEYLKIKPKDIGEICYN 120
Query: 119 FLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHT 178
+ G C G+ACRFGSSH+D+ I E +++ + N L +E++ LRK T
Sbjct: 121 YETFGRCGRGLACRFGSSHIDQGRNKINSEKLVET------AQAKNQLTHELQVALRKRT 174
Query: 179 YNFEKSEKICKEN 191
YNF+ +E + K N
Sbjct: 175 YNFDFAESLIKFN 187
>gi|47219443|emb|CAG10807.1| unnamed protein product [Tetraodon nigroviridis]
Length = 614
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 188/555 (33%), Positives = 270/555 (48%), Gaps = 137/555 (24%)
Query: 51 KKNKQVLKGQNKAR---GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
K + + L+GQNK+R PT + C ++ + C +G+KC F H + +M +
Sbjct: 84 KSDGKRLRGQNKSRPHIKPTTYEEKRLCLSVIQEN----KVCTFGDKCHFYHSVSDYMST 139
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
KP DI E+CY++ G C G +CRF +H + + DV+K + K N L+
Sbjct: 140 KPADIGERCYLYDTFGRCAYGFSCRFAKAHTTPDFKTVENADVIKACEGRTSVK--NSLS 197
Query: 168 NEVRQDLRKHTYNFEKS-EKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDD 226
+++ LRKH+ +F+KS ++ + A +++T ++ + ++ E+ +D
Sbjct: 198 KDLQNRLRKHSVDFKKSTQRFSRGGAACDPWSRNT----RSGHPRQLDFGEDCRP--SDG 251
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADIT 286
+ Q + + D+ K +L+ GNLPFRR+CK++GADIT
Sbjct: 252 CGRYQAASMRKKTGNFDVTK---------------WLNDFPKCGNLPFRRVCKRFGADIT 296
Query: 287 CSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDV 346
C EMA+ T LL+ EWAL+KRHESED+FGVQ+ G P +T+C +L+ VDFVD+
Sbjct: 297 CGEMAMCTNLLQGQQSEWALLKRHESEDVFGVQIEGCFPDTMTRCAELINNNTEVDFVDI 356
Query: 347 NLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406
N GCPI+ ++K+G G GL+ R F + G N YVL DV L
Sbjct: 357 NSGCPIDLVFKKGGGCGLMTRTRKFEEIVKGMN-YVL----------------DVPL--- 396
Query: 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW 466
TVK RTG+ + NI H +P+ + W
Sbjct: 397 -----------------------------------TVKIRTGVQEKTNIAHKLIPEMKKW 421
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526
G S+ITLHGR+REQRYTK ADWDYI C++L
Sbjct: 422 GVSMITLHGRSREQRYTKLADWDYISTCSKL----------------------------- 452
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
SP PL+GNGDILSYED + K +SG+MI RGALIK
Sbjct: 453 --------------------ASPVPLFGNGDILSYEDAM--MAKETGVSGIMIARGALIK 490
Query: 587 PWIFQEIKEKKLFDI 601
PWIF EIKEK+ +DI
Sbjct: 491 PWIFTEIKEKRHWDI 505
>gi|332852051|ref|XP_001146456.2| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
isoform 4 [Pan troglodytes]
Length = 654
Score = 299 bits (765), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 194/608 (31%), Positives = 287/608 (47%), Gaps = 161/608 (26%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTHKRARGQNKGRPHVKPTHYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGQ 239
Query: 191 ----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
+ + E + C Q G +TP + V GP+
Sbjct: 240 LPGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------QTCGPLT 290
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+
Sbjct: 291 DEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQ 350
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+
Sbjct: 351 MSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLMYKK-- 408
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI-------EFIYKQ 413
V +DV LG PI E +
Sbjct: 409 -----------------------------------VAALDVCLGFPIWVGVSWWEPPGSR 433
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
G L A + + C++ +S P +P+ L
Sbjct: 434 GLCLSLSLSAWLFWYLSLCVSLSASYP---------------AWRLLPQ----------L 468
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYTK ADW YIE+C Q
Sbjct: 469 HGRSREQRYTKLADWQYIEECVQ------------------------------------- 491
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EI
Sbjct: 492 ------------AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEI 537
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 538 KEQRHWDI 545
>gi|224087931|ref|XP_002195720.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Taeniopygia guttata]
Length = 718
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 202/365 (55%), Gaps = 106/365 (29%)
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GP+ D D+ K++ EKKK++ QGKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T L
Sbjct: 351 GPLTDEDVTKLRPCEKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNL 410
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ EWAL+KRH +ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +Y
Sbjct: 411 LQGQSSEWALLKRHHTEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVY 470
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K+G G L+ R+N F EQ+V
Sbjct: 471 KKGGGCALMTRSNKF--------------------EQIVRG------------------- 491
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
MN V +P+TVK RTG+ + N+ H +P+ R+WGAS++TLHGR
Sbjct: 492 ----------------MNSVLDVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTLHGR 535
Query: 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536
+REQRYT+ ADW YI +CA+L
Sbjct: 536 SREQRYTRSADWHYIAECARL--------------------------------------- 556
Query: 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
SP PL+GNGDILSYED +++ +SG+MI RGALIKPW+F EIKE+
Sbjct: 557 ----------ASPMPLFGNGDILSYEDANRAMQM--GVSGIMIARGALIKPWLFTEIKEQ 604
Query: 597 KLFDI 601
+ +DI
Sbjct: 605 RHWDI 609
>gi|301119491|ref|XP_002907473.1| tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4]
gi|262105985|gb|EEY64037.1| tRNA-dihydrouridine synthase 3 [Phytophthora infestans T30-4]
Length = 681
Score = 293 bits (749), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 203/639 (31%), Positives = 314/639 (49%), Gaps = 145/639 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLS-IECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
G A IK+ F+ + IE N + K+++ D G K+ K + + Q+
Sbjct: 39 GEAPIKKAFLKPKPAPKPAAIETDNAKEPAKVKDDRDRDGGKKKRGTFKKRPIDAEQD-- 96
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
P D C + + CK+G+ CKF HD + +MK KP+D+ E+C VF G
Sbjct: 97 --------PADLLC---RPVASGEGCKFGDSCKFSHDIDDYMKRKPKDLGERCPVFDAVG 145
Query: 124 YCPMGIACRFGSSHL---DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
YC G+ACRF SH+ D+ N+ +E ++ + +G++ N L +++R LRK TY+
Sbjct: 146 YCRYGMACRFAKSHIEKVDDIYRNLKREGYVETPGHDLGDE-ANDLTHDLRLKLRKDTYD 204
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKV---------- 230
F+ +++ K+ K +K + ++ + K+ +++V + EE + + K
Sbjct: 205 FQSKQQMRKDKKNNKRQQRNGKE--KDANAEVTQNSEESTVVESSEAAKANSVPEKVTPE 262
Query: 231 --QEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
E+ K P ++ ++ E+K +D++ K+Y++PLTTVGNLPFRRL K+ GADITC
Sbjct: 263 PESEDAKMEPAAESPLL----PERKPVDFKRKIYIAPLTTVGNLPFRRLMKQTGADITCG 318
Query: 289 EMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL 348
EMA+AT LLK+ EWAL++RH+SED+FGVQL G+ +T+ +LL + +DFVD+N+
Sbjct: 319 EMAMATNLLKAQQSEWALLRRHKSEDVFGVQLAGSFSDQMTRVCELLTRETDIDFVDINM 378
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
GCPI+ + + G+GS L +T+ +LLE VV
Sbjct: 379 GCPIDIVCRAGAGSAL------------------MTRPPRLLE---VV------------ 405
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA 468
G+ +GL L + + V++ +TVK RTG + H +PK + A
Sbjct: 406 ----SGALTGLE-----LGTRMRTGGIVNTPGLTVKLRTGWSEKQPTAHKLIPKLQAVRA 456
Query: 469 S----------------------LITLHGRTREQRYTKQADWDYIEKC--AQLCSRDNNI 504
S IT+HGR+R QRYTK ADWDYI +C AQ S D+
Sbjct: 457 SQAYVNSAVVTADFKLRATQSIDAITVHGRSRLQRYTKHADWDYIFQCSDAQKGSIDDKP 516
Query: 505 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDY 564
+ N P G GD+LSYE++
Sbjct: 517 LSNI------------------------------------------PFVGGGDVLSYEEF 534
Query: 565 TESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
E L+ + M+ RGALIKPW+ EIKE++ +DI A
Sbjct: 535 DEHLQNG-KLDTCMLARGALIKPWLPTEIKERRHWDISA 572
>gi|426386783|ref|XP_004059860.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
isoform 1 [Gorilla gorilla gorilla]
Length = 653
Score = 289 bits (739), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 189/608 (31%), Positives = 285/608 (46%), Gaps = 150/608 (24%)
Query: 14 IVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---PTFVT 70
+ E K + +E D + E E + +K+ +GQNK R PT
Sbjct: 67 LAEPEAKRIRLEDGQTADGQTEEAAEPGEQPQTQKR-------ARGQNKGRPHVKPTHYD 119
Query: 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA 130
K + CP L + + C +G++C+F+HD ++ +KP D+ +C +F G CP G+
Sbjct: 120 K--NRLCPSLIQESAAK-CFFGDRCRFLHDVGRYLATKPADLGPRCVLFETLGRCPYGVT 176
Query: 131 CRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE 190
CRF +HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 177 CRFAGAHLGPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALR- 233
Query: 191 NKASKNENKDTDDCCKNQDSKVIEG--REE------------INTPNTDDVIKVQEETKS 236
+ S+ + + EG R+E +TP + V
Sbjct: 234 -RFSQGQPPGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPV------RTC 286
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GP+ D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 287 GPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV---- 342
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
CT LL+ QM
Sbjct: 343 ----------------------------------CTNLLQGQM----------------- 351
Query: 357 KQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
S LL+R ++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+
Sbjct: 352 ---SEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKK 408
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
G G L+ R+ Q ++ MN+V L +++ + ++ + + W L L
Sbjct: 409 GGGCALMNRSTKFQQIVRGMNQVLRLCLSLSLSAWLSWSLSLCVSLSASYPAW-RLLPQL 467
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYTK ADW YIE+C Q
Sbjct: 468 HGRSREQRYTKLADWQYIEECVQ------------------------------------- 490
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EI
Sbjct: 491 ------------AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEI 536
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 537 KEQRHWDI 544
>gi|145341388|ref|XP_001415794.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576017|gb|ABO94086.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 608
Score = 285 bits (728), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 195/605 (32%), Positives = 280/605 (46%), Gaps = 145/605 (23%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
ASG +K+EF+VE ++ D + + GT F + K K
Sbjct: 19 ASGTVVVKREFLVEPRPPP-PLDAATHADAG--DAAPISGGGT----FGAFNKRAKFAEK 71
Query: 63 ARGPTFVTKP-EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
+R KP E C L T E C +G+ CK+ HD + F+K+KP D+ C +
Sbjct: 72 SR----ADKPRERGLCNQL---TREGKCAFGDACKYSHDVDAFLKTKPPDLPGTCTFVNK 124
Query: 122 HGYCPMGIACRFGSSHL---DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHT 178
G CP G+ CR+ +H +G + + E TV K +N + +V LRK
Sbjct: 125 EGGCPYGVRCRYYGTHATGEGRDGATVAESTTTLEPPKTV-EKEMNFVDKDVMVRLRKKK 183
Query: 179 YNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGP 238
Y+F +++ I KE + KD + G E + KV EE ++
Sbjct: 184 YDFSRADTIVKEVLRAMETKKD---------EQTKAGEE-----SAAKRAKVDEENRT-- 227
Query: 239 VLDTD-IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
DT K + EK+ ID++ KLYL+PLTTVGNLPFRR+CK GADITC EMA+ T LL
Sbjct: 228 --DTGAFTKARVEEKRTIDFKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALCTSLL 285
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
+ P EWAL++RH+SED+FGVQ+CG P +T+C QLLE+ + VDF+D+N+GCPI+ + +
Sbjct: 286 QGLPSEWALLRRHKSEDIFGVQICGGYPDSVTRCCQLLEDTIDVDFIDINMGCPIDSVCQ 345
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSG 416
+G GS +L++ + + V+ LG C + F
Sbjct: 346 KGYGSMMLEKPK---------------------KMETVIRAASAALGKCSLTF------- 377
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
KTR + + H F PK +WGA+ +TLHGR
Sbjct: 378 ---------------------------KTRMAYTDKSRVAHTFAPKVAEWGAAAMTLHGR 410
Query: 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536
TR QRY ADW+Y + TK++
Sbjct: 411 TRAQRYRSVADWEYT--------------------------------------KLTKES- 431
Query: 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
S PL GNGD+ +DY L++ S+ M+ RGALIKPW+F EIKE+
Sbjct: 432 -----------SSVPLIGNGDVYMQKDYYTHLEEH-SVDTCMLARGALIKPWLFTEIKER 479
Query: 597 KLFDI 601
+ +DI
Sbjct: 480 RDWDI 484
>gi|219121577|ref|XP_002181140.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407126|gb|EEC47063.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 545
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 180/532 (33%), Positives = 255/532 (47%), Gaps = 140/532 (26%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQ-----CYVFLQHGYCPMGIACRFGSSHLDEN 141
++C YG+ C+F HD FM S+PEDI+ + C +GYC G CR G+SH++ +
Sbjct: 28 ESCPYGDGCRFSHDMKEFMASRPEDINNKILGSVCPYIELYGYCVYGAMCRLGASHINMS 87
Query: 142 GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF------EKSEKICKENKASK 195
G +++D+ +N L EV+ LRK +Y F E+ K +E A K
Sbjct: 88 TGENIRKDI----DGPKPKPILNTLPKEVQIQLRKKSYPFKHQRYNERGGKNSRETTAPK 143
Query: 196 NENKDTDDCCKN-QDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
+ K TDD + ++ EGR + D+ + + +K
Sbjct: 144 DTEKVTDDALEPPSNTSAEEGRASSSI---------------------DMSPLPDRTRKL 182
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
ID+ K+Y++PLTTVGNLPFRR+ KK+GADITC EMAVAT LL EWAL+KRH ED
Sbjct: 183 IDFSKKVYVAPLTTVGNLPFRRIMKKFGADITCGEMAVATNLLSGQSSEWALLKRHPEED 242
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+FGVQ+ P V + +L+E +M VDFVD+NLGCP++ + +GSG+ L+ R
Sbjct: 243 IFGVQIAAGYPDVFARTCELIENEMNVDFVDLNLGCPLDIVCNKGSGAALMMR------- 295
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
D L +E G+L+ +TC
Sbjct: 296 -------------------------DKRLRSSVE---------GILE-------TLTC-- 312
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW---GASLITLHGRTREQRYTKQADWDYI 491
PI++K RTG HN + K + W G S + +HGR+R QRY K+ADWDYI
Sbjct: 313 -----PISIKMRTGWEMTKPFAHNLVQKIQSWGLDGISAVMIHGRSRLQRYAKEADWDYI 367
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
A+ S+D SL T+ P
Sbjct: 368 SMVAK--SQD---------------MSLTTI----------------------------P 382
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ GNGDI SY+D+ E + + S M+ RGALIKPW+ EIKE++ +DI A
Sbjct: 383 VIGNGDIFSYQDFEEKIAREGVNSCAMLARGALIKPWLPTEIKERRHWDISA 434
>gi|302773960|ref|XP_002970397.1| hypothetical protein SELMODRAFT_267436 [Selaginella moellendorffii]
gi|300161913|gb|EFJ28527.1| hypothetical protein SELMODRAFT_267436 [Selaginella moellendorffii]
Length = 634
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 176/530 (33%), Positives = 256/530 (48%), Gaps = 123/530 (23%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK 147
C +GE C+F HD ++ KPED+ C + CP G+ CRF +H ++
Sbjct: 98 ACPFGENCRFSHDLEGYLAQKPEDLPGVCPSVSLNVPCPYGVRCRFYGTHTKQDLPKENP 157
Query: 148 EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEK------------ICKENKASK 195
E + + T G +N+L + ++ L K +F K++ + ++NK
Sbjct: 158 EGAMDGDEETSGAGEINVLRKDFQKSLWKKLESFPKADSQLQAMGLKVTFLLSEQNKVYG 217
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT----DIIKIKNSE 251
+ T + ++ E +E N + D V +++ PV D D K+ + E
Sbjct: 218 PKKGATTE----GENGGAETHDENNDVSDDAVPPLKKPKLVDPVDDAKEQGDGCKLNSRE 273
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KKKID +GKLYL+PLTTVGNLPFRRLCKK GAD+TC EMA+ T LL+ EWAL++RH
Sbjct: 274 KKKIDLKGKLYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMCTNLLQGHASEWALLRRHP 333
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
ED FGVQ+CG+ LTK +L+E + VDF+D+NLGCPI+ + K+G+GS L
Sbjct: 334 VEDCFGVQICGSYADSLTKTVELIERECTVDFIDINLGCPIDIVVKKGAGSCL------- 386
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
LTK T+L EQ+V A+I++
Sbjct: 387 -----------LTKPTRL--EQIV------------------------RATASIMEK--- 406
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
P+T+K RTG + N H+ + + +WG S +T+HGRTR+QRY+K ADW YI
Sbjct: 407 --------PLTLKMRTGYFEGKNCAHSMISELSNWGVSAVTVHGRTRQQRYSKLADWVYI 458
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
CA+ D ++ N
Sbjct: 459 YDCAKRAPDDLQVLGN-------------------------------------------- 474
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GDI SY D+ E + ++S M+ RGALIKPW+ EIKE++ +DI
Sbjct: 475 ----GDIFSYSDWNEHMLPDLNLSSCMLARGALIKPWLLTEIKEQRHWDI 520
>gi|302769496|ref|XP_002968167.1| hypothetical protein SELMODRAFT_89139 [Selaginella moellendorffii]
gi|300163811|gb|EFJ30421.1| hypothetical protein SELMODRAFT_89139 [Selaginella moellendorffii]
Length = 540
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 171/526 (32%), Positives = 247/526 (46%), Gaps = 127/526 (24%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK 147
C +GE C+F HD ++ KPED+ C + CP G+ CRF +H ++
Sbjct: 16 ACPFGENCRFSHDLEGYLAQKPEDLPGVCPSVNLNVPCPYGVRCRFYGTHTKQDLPKENP 75
Query: 148 EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE--------KICKENKASKNENK 199
E + + T G +N+L + ++ L K +F K++ K+ ++ EN
Sbjct: 76 EGAMDGDEETSGAGEINVLRKDFQKSLWKKLESFPKADGQLQAMGLKVSFFGATTEGENG 135
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT----DIIKIKNSEKKKI 255
E +E N + D V +++ PV D D K+ + EKKKI
Sbjct: 136 GA------------ETHDENNDVSDDAVPPLKKPKLVDPVDDAKEQGDDCKLNSREKKKI 183
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
D +GKLYL+PLTTVGNLPFRRLCKK GAD+TC EMA+ T LL+ EWAL++RH ED
Sbjct: 184 DLKGKLYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMCTNLLQGHASEWALLRRHPVEDC 243
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
FGVQ+CG+ LTK +L+E + VDF+D+NLGCPI+ + K+G+GS L
Sbjct: 244 FGVQICGSYADSLTKTVELIERECTVDFIDINLGCPIDIVVKKGAGSCL----------- 292
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
LTK T+L + ++
Sbjct: 293 -------LTKPTRL-------------------------------------EQIVRATAS 308
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
+ P+T+K RTG + N H+ + + +WG S +T+HGRTR+QRY+K ADW YI CA
Sbjct: 309 IVEKPLTLKMRTGYFEGKNCAHSMISELSNWGVSAVTVHGRTRQQRYSKLADWVYIYDCA 368
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ D ++ N
Sbjct: 369 KRAPDDLQVLGN------------------------------------------------ 380
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GDI SY D+ E + ++S M+ RGALIKPW+ EIKE++ +DI
Sbjct: 381 GDIFSYSDWNEHMLPDLNLSSCMLARGALIKPWLLTEIKEQRHWDI 426
>gi|328771087|gb|EGF81127.1| hypothetical protein BATDEDRAFT_10653 [Batrachochytrium
dendrobatidis JAM81]
Length = 624
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 181/551 (32%), Positives = 269/551 (48%), Gaps = 123/551 (22%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCY 117
+GQNK + + + D K +T EQ C G CK+ HD ++ K D+ C
Sbjct: 92 RGQNKPKDRKQIVQ-HDSIRLCNKFATGEQ-CNLGSNCKYSHDIQAYLAEKELDLGPVCP 149
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
F G C GI CRF +H D G +V E L E + N + + +++Q
Sbjct: 150 QFALLGECKFGIKCRFSKAHTDAEGNQMVAEKKLNE-DQFIKNCSTKSIIQDIKQ----- 203
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT-DDVIKVQEETKS 236
KN DC ++++ EEI +++ K +EE ++
Sbjct: 204 -----------------KN-----IDCTRSKEFIQWWSAEEIKLQQRLNELKKRKEEPRA 241
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
G + +I ++ +EKKKID++GK YL+PLTTVGN+PFRR+CK +G DITCSEMA+A +L
Sbjct: 242 GA--EATLIPLRPNEKKKIDFRGKSYLAPLTTVGNIPFRRVCKSYGVDITCSEMAIARQL 299
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ SPQEWAL +RH SED+FG+QL N+P T+ ++L +++ DF+D+N+GCPI+ +
Sbjct: 300 LRGSPQEWALTRRHASEDMFGIQLASNDPTQFTQTVEILSQKVDCDFIDLNMGCPIDTMT 359
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K G+GS LL+R N K +L + V V + + I
Sbjct: 360 KSGNGSALLERKN---------------KVRGMLLGAVHVSSVPITIKMRI--------- 395
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
GL + I +I P RD G + IT+HGR
Sbjct: 396 -GLSNKKKIGHKII------------------------------PLARDCGVAAITVHGR 424
Query: 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536
++EQRYTK +DWDY +CA++ +T H T D
Sbjct: 425 SKEQRYTKLSDWDYTMECAKMTK--------------------MTWHS---PDASTVTPD 461
Query: 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS----ISGVMIGRGALIKPWIFQE 592
W + P +GNGD+ S ++Y + + S ++G+M+GRGAL KPWIF+E
Sbjct: 462 W--------VTEPPAFFGNGDVFSPQEYWDHVDHSTDSELPLAGIMVGRGALSKPWIFKE 513
Query: 593 IKEKKLFDIYA 603
IKE+KL+DI +
Sbjct: 514 IKERKLWDISS 524
>gi|426230677|ref|XP_004009391.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Ovis
aries]
Length = 612
Score = 275 bits (703), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 186/605 (30%), Positives = 281/605 (46%), Gaps = 159/605 (26%)
Query: 29 ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARG---------PTFVTKPEDCYCPF 79
E + +LE+ + ED G A++ + +Q L+ Q +ARG PT K + CP
Sbjct: 71 EAKRIRLEDGQTED-GQAEEAAEPGEQ-LQAQKRARGQNKCRPHVKPTHYDK--NKLCPS 126
Query: 80 LKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLD 139
L + + C YG++C+F+HD ++++KP D+ C +F G CP G+ CRF +HL
Sbjct: 127 LVQESAAK-CFYGDRCRFLHDVGHYLETKPADLGPSCVLFETFGRCPYGVTCRFAGAHLG 185
Query: 140 ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
G N+V+E +++ N L ++Q LRK +F+ +E+ ++
Sbjct: 186 PEGQNLVREGLVQ------APPVRNGLDKALQQQLRKRKIHFKHAEQALRQLSRGPLPGP 239
Query: 200 DTDDCCKNQDSKVIEGREEINTP---NTDDVIKVQEETKSGP----------VLDTDIIK 246
++ V EGRE P N D + QE GP + D D+++
Sbjct: 240 -------TPEATVPEGREAEGAPGQDNCDSQLAPQEPDTVGPPSGPLRTFGPLTDEDVVR 292
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
++ EK+++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 293 LRPREKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV-------------- 338
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
CT LL+ Q S LL+
Sbjct: 339 ------------------------CTNLLQGQT--------------------SEWALLK 354
Query: 367 R---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
R ++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ ++K+G G L+ R
Sbjct: 355 RHPCEDIFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVFKKGGGCALMNRL 414
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
Q ++ MN+V +P+TVK RTG+ ++R
Sbjct: 415 AKFQQIVRGMNQVLDVPLTVKLRTGV-----------------------------QERV- 444
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL---HGRTREQRYTKQADWDYI 540
N+ H +P RDWGA+L+T+ R R +++ +
Sbjct: 445 -------------------NLAHRLLPDLRDWGAALVTVGLGAERASGPRGPSLSNYPSL 485
Query: 541 EKCAQLCSPAPL----YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
PL NGDILSYED +L+ ++GVMI RGAL+KPW+F EIKE+
Sbjct: 486 LSPLSWSLARPLSLVSVWNGDILSYEDANRALQTG--VAGVMIARGALLKPWLFTEIKEQ 543
Query: 597 KLFDI 601
+ +DI
Sbjct: 544 RHWDI 548
>gi|255074587|ref|XP_002500968.1| predicted protein [Micromonas sp. RCC299]
gi|226516231|gb|ACO62226.1| predicted protein [Micromonas sp. RCC299]
Length = 662
Score = 275 bits (702), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 194/644 (30%), Positives = 300/644 (46%), Gaps = 161/644 (25%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A G A +K E++ V L+ N D K E + D G KK+ K+++ L + K
Sbjct: 22 AKGSAAVKTEYLRP--VPPLADTNANVVDDDKAEAGKRGDGGVDKKRTGKSRRALAREKK 79
Query: 63 -ARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQC-YVFL 120
AR D F K + C +G+KC++ H+ ++++K D+ C ++
Sbjct: 80 QAR-----ESGADLCSAFSKGA-----CTFGDKCRYSHNVESYLRAKQPDLPGACPFIAA 129
Query: 121 QHGYCPMGIACRFGSSHL-----------------------DENGGNIVKEDVLK-EWKN 156
CP GI CR+ +H + N V E VL+
Sbjct: 130 GKDKCPHGIMCRYLGTHPPVPDTEENKLLPALTPQTTAELKERNAAPGVNEGVLELPVPE 189
Query: 157 TVG-----NKTVNMLANEVRQDLRKHTYNFEKSEKICKE--NKASKNENKDTDDCCKNQD 209
+ G + +N ++ LRK F+K++ + KE ++S K+ D+ + +
Sbjct: 190 SPGGPFGPDDEMNQFCGWLKVRLRKGQVRFDKADAVLKELGVESSWRYGKEGDEKLRKKY 249
Query: 210 SK----VIEGREEINTPNTDDVIKVQEETKSGP--VLDTDIIKIKNSEKKKIDWQGKLYL 263
+ V G + DD + +K P + +K++ EKK ID++GKLYL
Sbjct: 250 GEKKDVVDPGEGGGDETREDDDEGGGKRSKVDPDNTAEGVDVKLRPVEKKTIDFRGKLYL 309
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTT GNLPFRR+CK++G DITC EMA+ T LL+ P EWAL++RH SED+FG Q+CG
Sbjct: 310 APLTTTGNLPFRRICKRYGVDITCGEMAMVTNLLQGQPAEWALLRRHPSEDIFGAQVCGG 369
Query: 324 NPYVLTKCTQLLEEQM----AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
+++C QLLE+++ +DF+D+N+GCPI+ + +G+GS LL++
Sbjct: 370 YSDSMSRCMQLLEDEVVSKGGLDFIDINMGCPIDLVCNKGAGSMLLEKPARM-------- 421
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
EQ+V RA+ +++C
Sbjct: 422 ------------EQLV--------------------------RAS--APLLSC------- 434
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+KTR G + + H +PK DWG + +TLHGR+R+QRY++ ADWDYI +CA+
Sbjct: 435 PLTLKTRMGYFDNKRVAHEIIPKMVDWGLAGMTLHGRSRQQRYSRLADWDYINQCAR--- 491
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
SP L GNGD+
Sbjct: 492 -----------------------------------------------ASPIQLIGNGDVF 504
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
SY DY ++++ ++ MI RGALIKPWIF EIKE++ +DI A
Sbjct: 505 SYHDYVKNVEGQ-GVATCMIARGALIKPWIFTEIKERRDWDISA 547
>gi|169862298|ref|XP_001837779.1| zinc finger dihydrouridine synthase [Coprinopsis cinerea
okayama7#130]
gi|187471053|sp|A8NZY7.1|DUS3_COPC7 RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|116501141|gb|EAU84036.1| zinc finger dihydrouridine synthase [Coprinopsis cinerea
okayama7#130]
Length = 676
Score = 274 bits (701), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 178/569 (31%), Positives = 258/569 (45%), Gaps = 152/569 (26%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI---------------------------------SEQ 115
C +G C+F HD ++K KP+D+ S +
Sbjct: 93 CDFGTSCRFTHDIAEYIKEKPQDLRIPLLSEFKESPPYGPDLTVIGKPGKKHPNIDFSTK 152
Query: 116 CYVFLQHGYCPMGIACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
C V + G C G CR+ H DE G + D K+ + + + +N + +V++
Sbjct: 153 CPVHEESGECRYGYKCRYMGGHALEDEEGNVTLVADEDKKAQVALTSHEINFVGGDVQKQ 212
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LR Y + +E K+ +E + ++ V+E +E +TD V +
Sbjct: 213 LRSKKYPTPIASAYLEELKSMNDEAQKPQAVV--SETTVME-TDEAQPSSTDAVASEATQ 269
Query: 234 TKSGPVLDTDIIK----------------IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
+ P ++I ++ SEK+++DW+GK YL+PLTTVGNLPFRR+
Sbjct: 270 NGTEPAPAEEVISKRVGGVQSGKDEPDVPMRFSEKRRLDWKGKTYLAPLTTVGNLPFRRM 329
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
C K GADITC EM +AT L S +EW+L++RH SE +FG+Q+ GN P+ L +++ +
Sbjct: 330 CVKLGADITCGEMGLATSFLAGSKEEWSLVRRHPSEKIFGIQVAGNKPHTLVPTAEVIAK 389
Query: 338 QM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV 395
+ VDFVD+N GCPI+ ++K GSGS LL A G + G N
Sbjct: 390 EFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGKLGKIIQGMN---------------- 433
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455
+ E+ L + ++T G+ + N
Sbjct: 434 -----------------------------------RALGEI-PLTVKIRT--GVKEGRNN 455
Query: 456 IHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
H MP+ +W AS ITLHGRTR+QRYTK ADWDYI++C
Sbjct: 456 AHKLMPRISAEWSASAITLHGRTRQQRYTKLADWDYIKECVAAV---------------- 499
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
R RE AD D P P++G GD S +DY E + +
Sbjct: 500 ----------RARE------ADED--------LPPVPIFGGGDCFSSQDYWEKINNY-GV 534
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GVMIGRGALIKPWIF EIKE++ +DI A
Sbjct: 535 DGVMIGRGALIKPWIFTEIKERREWDISA 563
>gi|326435888|gb|EGD81458.1| DUS3L protein [Salpingoeca sp. ATCC 50818]
Length = 612
Score = 272 bits (696), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 182/534 (34%), Positives = 250/534 (46%), Gaps = 165/534 (30%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVF-LQHGYCPMGIACRFGSSH--------- 137
C YG+KCKF HD + ++++KP D+ C + + G C GI CRF SSH
Sbjct: 110 ACSYGDKCKFEHDFDKYLQTKPPDVDAPCPFWEREGGKCRFGIMCRFYSSHKTLATTTET 169
Query: 138 ------LDENGGNIVKEDVLKEWKNTVGNKT----VNMLANEVRQDLRKHTYNFEKSEKI 187
G+ DV K NTV N ++N++RQ LR+ Y F KSE+
Sbjct: 170 TEATTTTTAPAGDF---DVAK--ANTVHTDIDINETNDISNDLRQRLRRFKYPFPKSEEY 224
Query: 188 CKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKI 247
++ + E REE V+E+ S I
Sbjct: 225 M---------------VLFSRANTGAEAREE-----------VEEKLVSA---------I 249
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
+ E+K+IDW+ KLYL+PLTTVGNLPFRRLCK+ GADITC EMA+A LL+ EWAL+
Sbjct: 250 ADKERKQIDWKDKLYLAPLTTVGNLPFRRLCKRLGADITCGEMAMARNLLEGQKSEWALL 309
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
+RHESED+FGVQ+CGN+P + TKC +LL + VDF+D+N GCPI+ ++ GSGS LL R
Sbjct: 310 RRHESEDVFGVQICGNHPRLTTKCVELLSNETDVDFIDLNCGCPIDLVFNHGSGSALLAR 369
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
G L G + PI + G
Sbjct: 370 KRRLGDILRG---------------------MSFASRVPITVKIRAG------------- 395
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
V++ T T I +D G SL+++HGR+R+QRY + AD
Sbjct: 396 --------VTNTSWTSHTLMPIFRDA-------------GVSLVSIHGRSRQQRYARLAD 434
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W Y+ KC +E+ L
Sbjct: 435 WGYVRKC---------------------------------------------VEEAKGL- 448
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+YGNGDILS+E+ + K + +SG+M+ RGALIKPW+F EIKE++ +DI
Sbjct: 449 ---PVYGNGDILSFEEAMQH-KATTGVSGLMLARGALIKPWLFTEIKEQRHWDI 498
>gi|348690864|gb|EGZ30678.1| hypothetical protein PHYSODRAFT_324006 [Phytophthora sojae]
Length = 668
Score = 272 bits (696), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 188/587 (32%), Positives = 288/587 (49%), Gaps = 130/587 (22%)
Query: 52 KNKQVLKGQNKARGPTFVTKP----EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
K+ + +G K RG TF +P ED + + C++G+ CKF HD + +MK
Sbjct: 68 KDGRDREGGKKKRGGTFKKRPADVEEDPADLLCRPVAAGEGCQFGDSCKFSHDVDDYMKR 127
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG---NIVKEDVLKEWKNTVGNKTVN 164
KP+D+ E+C VF GYC G+ACRF +H+++ G N+ ++D ++ N G++ VN
Sbjct: 128 KPKDLGERCPVFDVVGYCRYGMACRFAKAHIEKVDGIYRNVKRDDYVE--GNDQGDE-VN 184
Query: 165 MLANEVRQDLRKHTYNFEKSEKICKENKAS------KNENKDTDDCCKNQDSKVIEGREE 218
L +++R LRK TY+F+ +++ K+ K NE +++ + + E +
Sbjct: 185 DLTHDLRLKLRKDTYDFQSKQQMKKDKKNGKKWQKKSNEKQESKPDTEAASAPADETAKT 244
Query: 219 INTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
P E P+L +E+K +D++ K+Y++PLTTVGNLPFRRL
Sbjct: 245 ETAPEAVKAEAEMEPAAESPLL---------AERKPVDFKQKIYVAPLTTVGNLPFRRLL 295
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K+ GADITC EMA+AT LLK+ EWAL++RH+SED+FGVQ+ G+ + + +LL +
Sbjct: 296 KQTGADITCGEMAMATNLLKAQQSEWALLRRHKSEDVFGVQIAGSFSDQMARVCELLARE 355
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
+DFVD+N+GCPI+ + + G+GS L+ R +LLE VV
Sbjct: 356 TEIDFVDINMGCPIDVVCRVGAGSALMNRP------------------PRLLE---VV-- 392
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
G+ +GL L + + V++ +TVK RTG + H
Sbjct: 393 --------------SGALTGLE-----LGTRMRTGGTVNTPGLTVKLRTGWSEKQPTAHK 433
Query: 459 FMPKFRDWGAS----------------------LITLHGRTREQRYTKQADWDYIEKCAQ 496
+PK + AS I +HGR+R QRYTK ADWDYI +C+
Sbjct: 434 LVPKLQAVRASQAYVNAAVVTADFKLRATQSVDAIMVHGRSRLQRYTKNADWDYIFQCS- 492
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
A D I++ + P G G
Sbjct: 493 -------------------------------------DAQIDLIDE--KPLPHVPFVGGG 513
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
D+LS+E++ E L+ + M+ RGALIKPW+ EIKE++ +DI A
Sbjct: 514 DVLSHEEFDEHLQNG-KLETCMLARGALIKPWLPTEIKERRHWDISA 559
>gi|392590725|gb|EIW80054.1| FMN-linked oxidoreductase [Coniophora puteana RWD-64-598 SS2]
Length = 694
Score = 271 bits (693), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 202/678 (29%), Positives = 302/678 (44%), Gaps = 185/678 (27%)
Query: 5 GVAKIKQEFIV--------EDHVKVLSIECVNETDKRKLEELEV-EDDGTAKKKFKKN-- 53
G A IK E+I+ +D S V + + EV ++DG+ ++ KK+
Sbjct: 7 GTAPIKSEYILCSAPVSIPDDDAAEGSTSHVGQ---HHFGDAEVAQEDGSGPRRNKKHSR 63
Query: 54 --KQVLKGQNKARGPTFVTKPEDC-YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPE 110
K+ +G NK R F +D C + + T+ C+ G C+F HD + ++ +KP
Sbjct: 64 DQKKAQRGANKGR--RFGKVRDDLELCWRVANGTV---CELGTSCRFTHDVSAYLLAKPR 118
Query: 111 DI---------------------------------------SEQCYVFLQHGYCPMGIAC 131
DI +C V+ + G+C +G+ C
Sbjct: 119 DIRMPPLSNITASPPFIDARADDNTMDEDTPNTSVAASLDPKTKCPVYEEAGWCRLGLKC 178
Query: 132 RFGSSHLDENGGNIVK------------EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
RF H G V ED K+ + V +N + E + LR H Y
Sbjct: 179 RFLGDHAVITGPTEVNGEPAVVCPIALVEDDEKKAQAAVATTELNYVNAETLKLLRSHKY 238
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
++ KE +KNE++ + + S+ +G ++ + + ++ E+ S PV
Sbjct: 239 KRPITDAYMKELSEAKNEDEKEEPETPVETSQNGDG-QDTSAATATNAERIIEQRSSDPV 297
Query: 240 LDTDIIKIKNS--------EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
T+ + +S EK+++ W+GK YL+PLTTVGNLPFRRLC GADITC EM
Sbjct: 298 AATNPASLVDSPDARCRFAEKQRLHWKGKTYLAPLTTVGNLPFRRLCVDLGADITCGEMG 357
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL-------EEQMAVDFV 344
+AT L +S +EW+L++RH SE FGVQ+ GN P + ++L E +DFV
Sbjct: 358 LATSFLTASREEWSLVRRHPSEKTFGVQVAGNKPQTMGAVAEVLGNEFCSGEAGWGLDFV 417
Query: 345 DVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG 404
DVN GCPI+ ++K GSGS LL K T++L
Sbjct: 418 DVNCGCPIDLVFKTGSGSALLD---------------TQAKLTRILTG------------ 450
Query: 405 CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF- 463
+ RA + +P+T K RTG+ N H MP+
Sbjct: 451 ---------------MSRA------------LGPVPVTAKLRTGVKDGKNNAHKLMPRLV 483
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+ G +TLHGRTR+QRYTK ADWDYI++C +
Sbjct: 484 AECGVGALTLHGRTRQQRYTKLADWDYIKQCVEA-------------------------- 517
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
RE K+A+ + SP P++G GD S EDY +++ S + G+M+ RGA
Sbjct: 518 --VRE----KEAE--------EGLSPIPIFGGGDCFSSEDYWTNVEHS-GVDGIMVARGA 562
Query: 584 LIKPWIFQEIKEKKLFDI 601
LIKPWIF EIKE++ +DI
Sbjct: 563 LIKPWIFTEIKERREWDI 580
>gi|380795903|gb|AFE69827.1| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform 1,
partial [Macaca mulatta]
Length = 391
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 196/365 (53%), Gaps = 106/365 (29%)
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GP+ D D+++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T L
Sbjct: 24 GPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNL 83
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ EWAL+KRH+ ED F VQL G P +TKC +LL + VDFVD+N+GCPI+ +Y
Sbjct: 84 LQGQMSEWALLKRHQCEDFFCVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVY 143
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K+G G L+ R+ F Q +V ++ L P
Sbjct: 144 KKGGGCALMNRSTKF---------------------QQIVRGMNQVLDVP---------- 172
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR
Sbjct: 173 ------------------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGR 208
Query: 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536
+REQRYTK ADW YIE+C
Sbjct: 209 SREQRYTKLADWQYIEEC------------------------------------------ 226
Query: 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE+
Sbjct: 227 -------VKAASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQ 277
Query: 597 KLFDI 601
+ +DI
Sbjct: 278 RHWDI 282
>gi|281204195|gb|EFA78391.1| CCCH-type zinc finger-containing protein [Polysphondylium pallidum
PN500]
Length = 664
Score = 269 bits (687), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 173/551 (31%), Positives = 264/551 (47%), Gaps = 142/551 (25%)
Query: 79 FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHL 138
FLK E++C YG+ CK+ HD ++ +K + +CY++ +G C GI C FG H+
Sbjct: 120 FLK----EKSCPYGDSCKYSHDLQKYLSTKQPSLG-KCYLYETYGECKYGIKCLFGGDHI 174
Query: 139 DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENK------ 192
D G N + + + + ++ N ++N++R L K Y F+K+E+ +N
Sbjct: 175 D--GINSIVNKEVSDKCDQSQHQLQNDVSNDIRVMLTKKKYPFKKTEEYFIKNNLELRRN 232
Query: 193 ------ASKNENKDTDDCCKNQDSKVIEGREEINTP--------------NTDDVIKVQE 232
+ N K+T +DS V + ++ + + + + +
Sbjct: 233 QKGNKNNNNNNKKETKSEESKEDSNVNAAKVDVKVEETTTTTDATTTQTEDNNSNVSLIK 292
Query: 233 ETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
++ G ++ +K EKKK+DW+ +LYL+PLTTVGNLPFRR+CK G DITC EMA+
Sbjct: 293 QSHEGVEYHVEV-PLKPQEKKKLDWKNQLYLAPLTTVGNLPFRRICKSLGVDITCGEMAL 351
Query: 293 ATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPI 352
A+ +++ E AL+KRH SED FGVQLCG + + + +E+ + VDFVDVN GCPI
Sbjct: 352 ASNIVQGHKGELALLKRHPSEDKFGVQLCGPHLDSMMSSAEFIEDNLNVDFVDVNSGCPI 411
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ I G+G+ ++ R N + L G
Sbjct: 412 DLICNMGAGAAMMDRQNRMEMILRG----------------------------------- 436
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472
+ SV+TC P+T+K R G ++N H +P WGA +T
Sbjct: 437 -------------MSSVLTC-------PLTIKLRVGRTEENPNAHKIIPNLGSWGAQAVT 476
Query: 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532
+HGR+R QRYT+ A+W+YI++CA++
Sbjct: 477 VHGRSRTQRYTRLANWEYIKQCAEI----------------------------------- 501
Query: 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
SP P+ GNGDI ++ D +S S SIS +M+ RGALIKPWIF E
Sbjct: 502 ---------------SPIPVIGNGDIYNWRDIEKS---SDSISALMVARGALIKPWIFTE 543
Query: 593 IKEKKLFDIYA 603
IKEK+ +DI A
Sbjct: 544 IKEKRDWDISA 554
>gi|242072234|ref|XP_002446053.1| hypothetical protein SORBIDRAFT_06g001050 [Sorghum bicolor]
gi|241937236|gb|EES10381.1| hypothetical protein SORBIDRAFT_06g001050 [Sorghum bicolor]
Length = 679
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 176/578 (30%), Positives = 255/578 (44%), Gaps = 177/578 (30%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK 147
+CKYG C+F HD N ++ KP D+ C CP GI CRF S+H
Sbjct: 101 SCKYGTSCRFSHDINAYLSQKPADLEGTCPFTSLGQLCPYGITCRFLSTH---------- 150
Query: 148 EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK--------ENKASKNENK 199
+D + GN N L+ E+++ L K Y F K+ K +NKA +
Sbjct: 151 KDTPDPQNHPEGNHERNPLSKEIQKLLWKSKYKFPKASAQIKLLGLKDGNKNKAEAANDN 210
Query: 200 DTDDC-----------------------CKNQDSK-----VIEGREEINT-PNTDDVIKV 230
+ C CK D+ V+ E + P+ ++V
Sbjct: 211 PDETCELNGDEKTSLSSIPVNVEPDPTLCKEIDNSEGHPLVVNSVESVEPRPSKKSKVEV 270
Query: 231 QEETKSGPVL-----DTDIIKIKNS----------------------EKKKIDWQGKLYL 263
E G + +++ + + N EKK ID++ KLYL
Sbjct: 271 DETQDHGTGMHDNGAESEAVNLINGVKVSSNNQSSCKVDLITTPHLREKKIIDFREKLYL 330
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTTVGNLPFRRLCK GAD+TC EMA++T LL+ EWAL++RH SEDLFGVQ+CG
Sbjct: 331 APLTTVGNLPFRRLCKTLGADVTCGEMAMSTNLLQGQASEWALLRRHPSEDLFGVQICGP 390
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
P + + +L++ + VDF+D+N+GCPI+ + +G+GS LL +
Sbjct: 391 YPDTVARTVELVDNECPVDFIDINMGCPIDIVVNKGAGSSLLTKP--------------- 435
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
++ +I+Q+ + V+ P+TV
Sbjct: 436 ------------------------------------MRIRSIVQAA----SSVTEKPLTV 455
Query: 444 KTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503
K RT + N + + DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ
Sbjct: 456 KVRTAFFEGRNRADSIVSDIYDWGASAITIHGRSRQQRYSKLADWDYIYQCAQKAP---- 511
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
DY+ + GNGD+ S+ D
Sbjct: 512 ----------------------------------DYLH----------VIGNGDVFSFTD 527
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ + + IS MI RGALIKPW+F EIKE++ +DI
Sbjct: 528 WNKHVSDCSKISTCMIARGALIKPWLFTEIKEQRHWDI 565
>gi|9187612|emb|CAB96955.1| hypothetical protein, similar to (AF091072.1) predicted protein
[Homo sapiens]
Length = 465
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 238/469 (50%), Gaps = 92/469 (19%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 48 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 105
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 106 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 164
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 165 AHLRPEGQNLVQEEL--AARGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 222
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 223 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 273
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 274 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 333
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 334 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 393
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 394 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 414
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
+TVK RTG+ + N+ H +P+ RDWG +L+T+
Sbjct: 415 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTV 447
>gi|449546165|gb|EMD37135.1| hypothetical protein CERSUDRAFT_137621 [Ceriporiopsis subvermispora
B]
Length = 684
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 250/569 (43%), Gaps = 146/569 (25%)
Query: 84 TLEQTCKYGEKCKFVHDKNVFMKSKPEDI------------------------------- 112
+ +TC++G +C+ HD ++ +KP+DI
Sbjct: 96 AIGKTCEFGAECRNTHDVAAYLAAKPKDIRFPLAIQLSDLPPFLETPGDDEEMADGETQS 155
Query: 113 ---SEQCYVFLQHGYCPMGIACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
S C VF G C G+ CRF H+ DEN + + K+ + +N +
Sbjct: 156 LDFSTICPVFEATGECRYGLKCRFLGGHVRKDENRSLELVINEEKKARAATQETELNFID 215
Query: 168 NEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
+ LR Y+ S KE + +NE D D + E N D
Sbjct: 216 AGSLKSLRTKKYHHPISVAYLKELQEKENEETDVKDLKPEDQTAPQPALAEPNEVVPDFA 275
Query: 228 IKV----------QEETKSGPVLDTDI--IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFR 275
V Q+ + P D D + ++ EKK++ W GK YL+PLTTVGNLPFR
Sbjct: 276 PSVAAPLVSPESTQKAAQPNPEADADTPDVPVRFMEKKRLHWTGKTYLAPLTTVGNLPFR 335
Query: 276 RLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL 335
RLC +GADITC EM +A L+ S +EW+L++RH SE +FGVQ+ G+ P +L +++
Sbjct: 336 RLCVDYGADITCGEMGLALSFLQGSKEEWSLVRRHPSESIFGVQIAGSKPQLLVPAAEVI 395
Query: 336 EEQMA--VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
+ A +DFVD+N GCPI+ +Y+QGSGS LL A G L G N
Sbjct: 396 ARECAGNLDFVDLNCGCPIDLVYRQGSGSALLDAAGRLGKSLIGMN-------------- 441
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
+ E+ L + ++T G+
Sbjct: 442 -------------------------------------KALGEI-PLTVKLRT--GVKDGR 461
Query: 454 NIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
N H MP+ +W S +TLHGRTR+QRYTK ADWDYI++ +
Sbjct: 462 NTAHKLMPRLATEWHVSALTLHGRTRQQRYTKLADWDYIKQSVEAVR------------- 508
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
K+AD D P P++G GD S EDY + ++
Sbjct: 509 -------------------AKEADED--------LPPIPIFGGGDCFSSEDYYAKIDQT- 540
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ GVMIGRGALIKPWIF EIKE++ +DI
Sbjct: 541 GVDGVMIGRGALIKPWIFTEIKERREWDI 569
>gi|359475077|ref|XP_002275411.2| PREDICTED: tRNA-dihydrouridine synthase 3-like [Vitis vinifera]
gi|297744713|emb|CBI37975.3| unnamed protein product [Vitis vinifera]
Length = 678
Score = 265 bits (676), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 175/572 (30%), Positives = 258/572 (45%), Gaps = 161/572 (28%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDE-NGGNI- 145
C Y EKC+F HD + KP+D+ C G CP G+ACRF +H D GN+
Sbjct: 96 ACPYNEKCRFSHDLEAYKAQKPDDLEGSCPFTSAEGACPYGLACRFSGTHKDGVAAGNLN 155
Query: 146 ----------VKEDVLKE-WKNTV-----------------GNKTVNMLANEVRQDLRKH 177
+ +DV K WKN + N + ++ DL+
Sbjct: 156 LHKKNSEINGLNKDVQKLLWKNKIRFPKADAKLKLLGLLGKANSKIKTFEDKGEGDLKVS 215
Query: 178 TYNFEKSEKICKE------NKASKNENKDTDDCCKN------QDSKVIEG--REEINTPN 223
++ C E NK + +D + + +K I+ EE T N
Sbjct: 216 NGTHATNDNSCGELVIDSDNKVEGSPKMPEEDDVEGFATDEPRPTKKIKSATNEECCTGN 275
Query: 224 TDDVIKVQEE------TKSGPVLDTDII--------KIKNSEKKKIDWQGKLYLSPLTTV 269
D+ VQE+ + P TD I K+ EKK ID++ KLYL+PLTTV
Sbjct: 276 ADNGASVQEKDLGKSCAQIEPESATDNIFSESDGSLKLHPREKKLIDFREKLYLAPLTTV 335
Query: 270 GNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLT 329
GNLPFRR+CK GAD+TC EMA+ T LL+ EWAL++RH +EDLFGVQ+CG P +
Sbjct: 336 GNLPFRRVCKMLGADVTCGEMAMCTNLLQGQASEWALLRRHSAEDLFGVQICGAYPDTVA 395
Query: 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQL 389
+ +L++++ VDF+D+N+GCPI+ + +G+GS LL +
Sbjct: 396 RTVELIDQECEVDFIDINMGCPIDIVVNKGAGSALLTKP--------------------- 434
Query: 390 LEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449
++ NI+++ +++ PITVK RTG
Sbjct: 435 ------------------------------MRMKNIIEAASGIVDK----PITVKVRTGF 460
Query: 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFM 509
+ N + + + WGA+++T+HGR+R+QRY+K ADW+YI +CA+ ++
Sbjct: 461 LEGRNRVDSLIADIGQWGANVVTIHGRSRQQRYSKLADWEYIYQCARKAPEALQVL---- 516
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
GNGDI SY D+ +
Sbjct: 517 --------------------------------------------GNGDIFSYLDWNKHKS 532
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P +S MI RGAL+KPWIF EIKE++ +DI
Sbjct: 533 GCPELSTCMIARGALVKPWIFTEIKEQRHWDI 564
>gi|334187297|ref|NP_195600.2| tRNA-dihydrouridine synthase 3-like protein [Arabidopsis thaliana]
gi|374095403|sp|Q9T0J6.2|DUS3L_ARATH RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=Zinc finger CCCH domain-containing protein
50; Short=AtC3H50; AltName: Full=tRNA-dihydrouridine
synthase 3-like
gi|332661587|gb|AEE86987.1| tRNA-dihydrouridine synthase 3-like protein [Arabidopsis thaliana]
Length = 691
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 266/581 (45%), Gaps = 159/581 (27%)
Query: 77 CPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSS 136
CP + + +C+Y +KC+F HD F K +DI QC C G++CRF S
Sbjct: 100 CPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGS 159
Query: 137 HLDENGGNIVKED-----VLKE-----WKNT---------------VGNKTVNMLANEVR 171
H D G + KE KE WKN +G+ + A E+
Sbjct: 160 HRDITGNSDDKEKSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAKKSNAAEEIT 219
Query: 172 QDLRKHTYNFEKSEKICKENKASKNEN----KDTD-----DCCKNQDSKVIEGREEINTP 222
+ ++ N ++ ++ ++ S +D D + + + K + ++ N+
Sbjct: 220 AEKTQNGMNGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKNSK 279
Query: 223 NTD-----DVIKVQEETKS-------GPVLDTDIIKIKNSE----------KKKIDWQGK 260
D D +K++EETK V D D IKI ++ KK ID++ K
Sbjct: 280 TGDVGGVYDGVKLEEETKKNGYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDK 339
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+PLTTVGNLPFRRLCK GAD+TC EMA+ T LL+ EWAL++RH SEDLFGVQ+
Sbjct: 340 LYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 399
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
CG+ P +++ +L++ + VDF+D+N+GCPI+ + + +GS LL N P
Sbjct: 400 CGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALL------------NKP 447
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
L+ NI++ + + P
Sbjct: 448 ---------------------------------------LRMKNIVE----VSSSIVETP 464
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
IT+K RT + N I + + +WGA+ +T+HGR+R+QRY+K ADWDYI +C + +
Sbjct: 465 ITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATT 524
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +I GNGD+ S
Sbjct: 525 NLQVI------------------------------------------------GNGDVYS 536
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
Y D+ + P +S MI RGALIKPWIF EIKE++ +DI
Sbjct: 537 YLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDI 577
>gi|4490341|emb|CAB38623.1| putative protein [Arabidopsis thaliana]
gi|7270872|emb|CAB80552.1| putative protein [Arabidopsis thaliana]
Length = 700
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 266/581 (45%), Gaps = 159/581 (27%)
Query: 77 CPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSS 136
CP + + +C+Y +KC+F HD F K +DI QC C G++CRF S
Sbjct: 109 CPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGS 168
Query: 137 HLDENGGNIVKED-----VLKE-----WKN---------------TVGNKTVNMLANEVR 171
H D G + KE KE WKN +G+ + A E+
Sbjct: 169 HRDITGNSDDKEKSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAKKSNAAEEIT 228
Query: 172 QDLRKHTYNFEKSEKICKENKASKNEN----KDTD-----DCCKNQDSKVIEGREEINTP 222
+ ++ N ++ ++ ++ S +D D + + + K + ++ N+
Sbjct: 229 AEKTQNGMNGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKNSK 288
Query: 223 NTD-----DVIKVQEETKS-------GPVLDTDIIKIKNSE----------KKKIDWQGK 260
D D +K++EETK V D D IKI ++ KK ID++ K
Sbjct: 289 TGDVGGVYDGVKLEEETKKNGYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDK 348
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+PLTTVGNLPFRRLCK GAD+TC EMA+ T LL+ EWAL++RH SEDLFGVQ+
Sbjct: 349 LYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 408
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
CG+ P +++ +L++ + VDF+D+N+GCPI+ + + +GS LL N P
Sbjct: 409 CGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALL------------NKP 456
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
L+ NI++ + + P
Sbjct: 457 ---------------------------------------LRMKNIVE----VSSSIVETP 473
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
IT+K RT + N I + + +WGA+ +T+HGR+R+QRY+K ADWDYI +C + +
Sbjct: 474 ITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATT 533
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +I GNGD+ S
Sbjct: 534 NLQVI------------------------------------------------GNGDVYS 545
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
Y D+ + P +S MI RGALIKPWIF EIKE++ +DI
Sbjct: 546 YLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDI 586
>gi|308808596|ref|XP_003081608.1| tRNA-dihydrouridine synthase (ISS) [Ostreococcus tauri]
gi|116060073|emb|CAL56132.1| tRNA-dihydrouridine synthase (ISS) [Ostreococcus tauri]
Length = 639
Score = 264 bits (674), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/522 (30%), Positives = 251/522 (48%), Gaps = 147/522 (28%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL--QHGYCPMGIACRFGSSHLDENGGN 144
+ C+ G++C + HD + + SKP D+ VF+ + CP G+ CRF SSH
Sbjct: 133 EVCRLGKRCGYSHDLSAYRASKPSDVERAACVFINAESDSCPFGVRCRFESSHRKMKSDK 192
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
V+ +N+L + +++ L ++ Y F +S+K +E
Sbjct: 193 TVE-------------MPMNILDDAMQKRLSRNEYPFPRSDKALREG------------- 226
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK-KIDWQGKLYL 263
N + K + + K + + + G + + ++ EK+ ++++GK+Y+
Sbjct: 227 --NLEVKCLSFAQ-----------KHKLDRREGFLGSFEPGRVNAREKRVSLEFKGKIYV 273
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTTVGNLPFRR+C GADIT SEMA+A+ LLK +EWAL++RH
Sbjct: 274 APLTTVGNLPFRRICTDLGADITVSEMAMASNLLKGDRKEWALVRRH------------- 320
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
PIE FG+Q+CG P ++
Sbjct: 321 ---------------------------PIE---------------KCFGIQICGGYPDLM 338
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
T+C +LL+ ++ DF+DVN+GCPI+ + +G+G L++ + L+ V+ M VSS P+T+
Sbjct: 339 TRCAELLDNEVHCDFIDVNMGCPIDGVCAKGAGGSLMRDTDRLKRVVRSMTSVSSTPVTI 398
Query: 444 KTRTGIHKDNN--IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
K R G D + + H+ + K + WGA TLHGRTREQRY++ ADW YI +CA D
Sbjct: 399 KLRMGYFDDPSRYVAHDIISKAKSWGAYAATLHGRTREQRYSRLADWSYIHRCA-----D 453
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
+ ++N PL GNGD+ +Y
Sbjct: 454 ASALNNL------------------------------------------PLIGNGDVYTY 471
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+D+ E + + IS MIGRGA+IKPW+ EIKE++ +DI A
Sbjct: 472 QDWNEQI-ANEKISTCMIGRGAIIKPWLMTEIKEQRHWDISA 512
>gi|353240264|emb|CCA72141.1| related to DUS3-member of dihydrouridine synthase family, partial
[Piriformospora indica DSM 11827]
Length = 621
Score = 263 bits (671), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 171/566 (30%), Positives = 255/566 (45%), Gaps = 141/566 (24%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI------------------------------------ 112
C +GEKC+ HD ++ KP DI
Sbjct: 133 CPFGEKCRASHDLAAYLLGKPSDIFFPTSLSLSSSPPFVHVGDVDTEGTEAYKAAHPFID 192
Query: 113 -------SEQCYVFLQHGYCPMGIACRFGSSHL-----DENGGN---IVKEDVLK-EWKN 156
+ +C F ++G C CRF +HL + GG+ V+ + + EW
Sbjct: 193 LCPGASTATRCTYFEEYGECKANFKCRFLGAHLQYAPVNGEGGHRTLSVRANPERIEWAK 252
Query: 157 TVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGR 216
+ +NM+ + + LRK Y EK+++ + K + ++ + K EG
Sbjct: 253 AHAQE-LNMIQPDTAKSLRKREYKMEKTDEFRRILKEGEGKSMSFRGLLTKRADKEDEG- 310
Query: 217 EEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
D +ETK G +D+ I+ EKK++ W+ YL+PLTTVGNLPFRR
Sbjct: 311 --------DMAEDRDDETKGG----SDVYIIERPEKKRLHWKDLTYLAPLTTVGNLPFRR 358
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL- 335
LC G DITC EM ++ L+ S +EW+L++RH SE +FGVQ+ GN P T C ++
Sbjct: 359 LCTTLGVDITCGEMGLSHSFLQGSKEEWSLVRRHPSERIFGVQIAGNKPEQTTACADVIG 418
Query: 336 EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV 395
E ++DFVD+N GCPI+ +Y+ GSGS LL A G L G N Y L
Sbjct: 419 NECSSIDFVDLNAGCPIDLVYQAGSGSALLNTAGKMGKCLIGMN-YAL------------ 465
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455
+P+T+K RTG+
Sbjct: 466 -----------------------------------------GDVPVTLKMRTGVKDGFPT 484
Query: 456 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDW 515
H MP+ DW +TLHGR+R+QRYT+ ADW+YI+ C Q + + + D
Sbjct: 485 AHKLMPRLHDWAVGSVTLHGRSRQQRYTRLADWEYIKSCVQALRAHEATLADAVEGI-DA 543
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
++ R + ++ + P P +GNGD S +Y ++++ + +
Sbjct: 544 DVAM----------RSSGGLNYGF--------GPIPFWGNGDCFSGLEYWKTVEAT-GVD 584
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDI 601
G+MIGRGALIKPWIF EIKE++ +DI
Sbjct: 585 GIMIGRGALIKPWIFTEIKERRDWDI 610
>gi|335282431|ref|XP_003354063.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 2 [Sus
scrofa]
gi|335282439|ref|XP_003354066.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 2 [Sus
scrofa]
Length = 411
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 186/352 (52%), Gaps = 106/352 (30%)
Query: 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
S++ K+D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KR
Sbjct: 57 SQETKLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQTSEWALLKR 116
Query: 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
H ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+
Sbjct: 117 HPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSA 176
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
F Q +V ++ L P
Sbjct: 177 KF---------------------QQIVRGMNQVLDVP----------------------- 192
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+TVK RTG+ + N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW
Sbjct: 193 -----------LTVKIRTGVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWQ 241
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
YIE+C SP
Sbjct: 242 YIEQC-------------------------------------------------VTAASP 252
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
PL+GNGDILSYED ++K ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 253 MPLFGNGDILSYEDANRAMKT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 302
>gi|325188682|emb|CCA23213.1| tRNAdihydrouridine synthase 3 putative [Albugo laibachii Nc14]
Length = 637
Score = 262 bits (669), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 190/612 (31%), Positives = 284/612 (46%), Gaps = 111/612 (18%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
M G A IK +F+ K + E D + EE E+ K K ++G
Sbjct: 1 MVGRGEAAIKPQFL-----KPIVSTRTTEIDPKPKEEKLDENAKLMKTK-------MRGT 48
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
K R V P D C FL + + C+YGE+CKF H+ FMK KP+DI C +F
Sbjct: 49 FKKRPIDQVEDPSDVLCRFL---AVSKPCEYGERCKFSHEIKDFMKRKPKDIHPYCPIFE 105
Query: 121 QHGYCPMGIACRFGSSHLDEN--GGNIVKEDVLKEWKNTVGN-------KTVNMLANEVR 171
G C G+ CRF S H+ + V E+V + + V N + N L+ E+
Sbjct: 106 SFGECEYGLKCRFASVHVANTTQSSDSVAENVTENEEEKVINTRRKREEEESNHLSAELC 165
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
+ LRK+ Y F C + K + D+ K P+T+ ++
Sbjct: 166 ESLRKNRYCFG-----CIQRKDKRKPKTDSRSPGKLH-------------PDTNPILS-D 206
Query: 232 EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
EE P+L SE+K+ID+ K+Y++PLTTVGNLPFRRL K+ GADITC EMA
Sbjct: 207 EEVAPSPLL---------SERKQIDFHRKIYVAPLTTVGNLPFRRLLKQTGADITCGEMA 257
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP 351
+++ +L++ EWAL++RH+SED+FGVQ+ G + + + +LL + VDF+D+N+GCP
Sbjct: 258 MSSNILQAQRSEWALLRRHKSEDVFGVQIAGAHGDQMARVCELLTRETDVDFIDINMGCP 317
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ + K GSGS L+ R + G + L+ + +V +
Sbjct: 318 IDIVCKSGSGSALMTRPARLLEVISGALTGIQIGQQHRLQSRKIVANSSAFCYPALSVKL 377
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
+ G ++ +I+ + S +++ T D++ I
Sbjct: 378 RTGWSEKQPSAHKVVSKIISTRS--SHTYVSMNTAHWCKLDDS-----------QSVRAI 424
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
+HGR+R QRYTK+ADWDYI +CA S +I+ G S I
Sbjct: 425 AIHGRSRLQRYTKEADWDYIYRCADTSS---DIVS---------GTSFI----------- 461
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
G GD+LS+ ++ E LK + M+ RGALIKPW+
Sbjct: 462 ----------------------GGGDVLSFVEFDEHLKNG-KLDTCMVARGALIKPWLPI 498
Query: 592 EIKEKKLFDIYA 603
EIKE++ FDI A
Sbjct: 499 EIKERRHFDISA 510
>gi|390605069|gb|EIN14460.1| zinc finger dihydrouridine synthase [Punctularia strigosozonata
HHB-11173 SS5]
Length = 675
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 166/565 (29%), Positives = 257/565 (45%), Gaps = 152/565 (26%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDI---------------------------------- 112
Q C++G +C++ HD ++ KP D+
Sbjct: 101 QMCEFGAECRYAHDIPAYLSQKPRDLRFPPISRLSHVAPFVSPAPDHDTEVDADYPTVDF 160
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLD--ENGGNIVKEDVLKEWKNTVGNKTVNMLANEV 170
C + + GYC G+ CRF H E+G ++ D ++ + + +N + ++V
Sbjct: 161 HTSCPIHEEVGYCRFGLKCRFLGGHARKIEDGSLELEVDEERKARAALTTTELNYIGSDV 220
Query: 171 RQDLRKH------------TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREE 218
+ LR T + + + ++K KNE + D + S+ + E
Sbjct: 221 MKALRTKKACSAILYPRPITEAYLQELQESNQDKPEKNEVVEEDGVTEPTFSEPVSLSEP 280
Query: 219 INTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
+ P + ++ + K DT + ++ +EKK++ W+ K YL+PLTTVGNLPFRRLC
Sbjct: 281 L--PPASPLTEIADSQK-----DTPDVPMRLAEKKRLHWREKAYLAPLTTVGNLPFRRLC 333
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL--E 336
GADITC EM +AT L S +EW+L++RH SE FGVQ+ G+ P + +++ E
Sbjct: 334 VSLGADITCGEMGLATSFLTGSKEEWSLVRRHPSESTFGVQIAGSKPATMVAAAEVIGRE 393
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ VDFVD+N GCPI+ ++K GSGS LL+ +P L+K
Sbjct: 394 CRDTVDFVDINCGCPIDLVFKTGSGSALLE------------SPSKLSK----------- 430
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
I+ + + E+ P+TVK RTG+ + N
Sbjct: 431 ----------------------------IIVGMNRALGEI---PLTVKLRTGVKEGRNNA 459
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H MP+ D G S +TLHGRTR+QRY K ADWDYI++C
Sbjct: 460 HKLMPRLLDSGVSAMTLHGRTRQQRYAKLADWDYIKQCVAAV------------------ 501
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
R +E+ + P P++G GD S +D+ + ++ S +
Sbjct: 502 --------RAKEEE--------------ENLPPVPIFGGGDCFSSQDFWQDIEHS-GVDS 538
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
VM+ RGALIKPWIF EIKE++ +DI
Sbjct: 539 VMVARGALIKPWIFTEIKERREWDI 563
>gi|395329491|gb|EJF61878.1| zinc finger dihydrouridine synthase [Dichomitus squalens LYAD-421
SS1]
Length = 687
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 174/568 (30%), Positives = 243/568 (42%), Gaps = 149/568 (26%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI----------------------------------SE 114
C +G +CKF HD + ++ +KP D +
Sbjct: 103 CDFGAECKFTHDVSAYLTAKPRDTYFPSTEDILNEPPFVRLPDVEMEEGQAPRTSLDPNT 162
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLD--ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQ 172
C VF + G C G+ CRF +H E G + D K+ VN + + +
Sbjct: 163 TCPVFQRTGECKQGLKCRFLGNHARTREVGELELVVDEEKKAHVAASETEVNFIDGDTLR 222
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQE 232
+R Y ++ +E K + E D + K +D K E P +
Sbjct: 223 KIRTKKYPHPIADAYLQELKDAAIEG-DKANSDKTEDEKGDNVPEPTTEPQATPATGPES 281
Query: 233 ETKSGPVL--------------DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
T L DT + I+ EKK++ W+GK YL+PLTTVGNLPFRRLC
Sbjct: 282 TTNGSSYLVPPAATATIDKLQDDTPDVPIRAVEKKRLHWKGKTYLAPLTTVGNLPFRRLC 341
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
+GADITC EM +A L+ S +EW+L++RH SE +FG+Q+ G+ P +L +++ +
Sbjct: 342 VDYGADITCGEMGLAMSFLQGSKEEWSLVRRHPSEGIFGMQIAGSKPQLLVPAAEIIGRE 401
Query: 339 MA--VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
A +DFVDVN GCPI+ +YK GSGS LL A G ++VV
Sbjct: 402 CAGNLDFVDVNCGCPIDLVYKTGSGSALLDAAGRLG--------------------KIVV 441
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
P+ + G G N
Sbjct: 442 GMSKALGDIPVTVKLRTGVKDG----------------------------------RNTA 467
Query: 457 HNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDW 515
H MP+ +W S ITLHGRTR+QRYTK ADWDYI++C Q
Sbjct: 468 HKLMPRLGPEWDVSAITLHGRTRQQRYTKLADWDYIKQCVQAV----------------- 510
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
R RE+ + +P P++G GD S EDY ++ +
Sbjct: 511 ---------RAREEE--------------EDLAPVPIFGGGDCFSSEDYWYKMENY-DVD 546
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYA 603
G+MIGRGALIKPWIF EIKE++ +DI A
Sbjct: 547 GIMIGRGALIKPWIFTEIKERREWDISA 574
>gi|336385499|gb|EGO26646.1| hypothetical protein SERLADRAFT_347999 [Serpula lacrymans var.
lacrymans S7.9]
Length = 651
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 188/607 (30%), Positives = 279/607 (45%), Gaps = 157/607 (25%)
Query: 43 DGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDC-YCPFLKDSTLEQTCKYGEKCKFVHDK 101
+G KK K+ K+ +G NK R F +D C + + C++G +C+F HD
Sbjct: 40 EGGRKKLTKEQKKAQRGANKGR--KFGKIRDDLELCWRVANGKF---CEFGSECRFTHDV 94
Query: 102 NVFMKSKPEDI------------------------------------SEQCYVFLQHGYC 125
++ +KP+DI C F + G C
Sbjct: 95 EAYLAAKPKDIRFPSASNITDTPPFVQELSNTDYESFANGKYPSLDLKTICPGFEEIGEC 154
Query: 126 PMGIACRFGSSH--LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
+G+ CR+ +H +DE+G + D K+ K + +N ++ E + LR Y
Sbjct: 155 RLGLKCRYLGAHAGIDEDGALALVADEEKQMKAGSAAE-LNYVSQEALKLLRSRKYPRPV 213
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT-----DDVIKVQEETKSGP 238
++ KE ++ +QD E RE+I+ + +D I +Q +
Sbjct: 214 TDAYLKELES------------MDQDVSAKEIREKIDNDISQQELDNDAIILQRTGDNIS 261
Query: 239 VLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK 298
+D+ + ++ SEKK++ W+GK YL+PLTTVGNLPFRRLC GADITC EM +AT L
Sbjct: 262 QVDSPDVPMRFSEKKRLRWEGKSYLAPLTTVGNLPFRRLCVSLGADITCGEMGLATSFLS 321
Query: 299 SSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFIY 356
+S +EW+L++RH SE FGVQL GN P + ++L ++ A +DFVDVN GCPI+ ++
Sbjct: 322 ASKEEWSLVRRHPSETTFGVQLAGNKPSTMVPTAEILGKEFAGSIDFVDVNCGCPIDLVF 381
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
+ GSGS LL G L G N + L E P+ + G
Sbjct: 382 RTGSGSALLDTPGKLGKILIGMN--------KALGE------------IPVTVKLRTGVK 421
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHG 475
G R HK MP+ ++ ITLHG
Sbjct: 422 DG---------------------------RNTAHK-------LMPRLGSEFNVGCITLHG 447
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
RTR+QRYTK ADW+YI++C + RTRE+
Sbjct: 448 RTRQQRYTKLADWNYIKQCVEAV--------------------------RTREKD----- 476
Query: 536 DWDYIEKCAQL-CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E C L P P++G GD S +DY +++++ + G+M+GRGALIKPWIF EIK
Sbjct: 477 -----EDCVCLFLPPIPIFGGGDCFSAQDYWSNVEET-GVDGIMVGRGALIKPWIFTEIK 530
Query: 595 EKKLFDI 601
E++ +DI
Sbjct: 531 ERREWDI 537
>gi|338726582|ref|XP_003365354.1| PREDICTED: tRNA-dihydrouridine synthase 3 isoform 2 [Equus
caballus]
Length = 408
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 186/356 (52%), Gaps = 106/356 (29%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
K S + ++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+
Sbjct: 52 KPSRETELDISGKLYLAPLTTCGNLPFRRVCKRFGADVTCGEMAVCTNLLQGQTSEWALL 111
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
+RH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+QR
Sbjct: 112 RRHQCEDIFGVQLEGAFPDTMTKCAELLNRTVDVDFVDINVGCPIDLVYKKGGGCALMQR 171
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
+ F Q +V + L P
Sbjct: 172 SGKF---------------------QQIVRGMSQVLDVP--------------------- 189
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
+TVK RTG+ + + H +P+ R WGA+L+TLHGR+REQRYTK AD
Sbjct: 190 -------------LTVKLRTGVQERTPLAHRLLPELRTWGAALVTLHGRSREQRYTKLAD 236
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W YIE+C
Sbjct: 237 WRYIEQC-------------------------------------------------VAAA 247
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
SP PL+GNGDILSYED +++ ++GVMI RGAL+KPW+F EIKE++ +DI A
Sbjct: 248 SPMPLFGNGDILSYEDANRAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDISA 301
>gi|356508136|ref|XP_003522816.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Glycine max]
Length = 706
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 192/675 (28%), Positives = 297/675 (44%), Gaps = 204/675 (30%)
Query: 3 ASGVAKIKQEFIVEDHVKVLS----IECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLK 58
A +A +K++F+ V+ S + N+ +K + + + +K++ K+ +++
Sbjct: 50 ARAIAPVKKDFLRPPPVRSSSPNDGVSIPNDNNKTSV----LAKEKKSKRQLKRERRL-- 103
Query: 59 GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYV 118
Q AR CP + + +C Y +KC+F HD F KP D+ QC
Sbjct: 104 EQKSARN----------LCPEIAKTGDVSSCPYKDKCRFSHDLEAFKAQKPADLEGQCPF 153
Query: 119 FLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHT 178
F G CP G+ CRF S+H E+G V L KN N VN L+ V++ L K+
Sbjct: 154 FKSGGACPYGLGCRFSSTH--EDG---VPSANLNGLKN---NSEVNGLSKHVQKLLWKNK 205
Query: 179 YNFEKSEKICKE------NKASKN--ENKD---------------------TDDCCK--- 206
+F K++ K +K+ +N ENKD +D CCK
Sbjct: 206 MSFSKADAQLKSLGLVGTSKSKRNDLENKDEGDTGSNKCDHSDYSGSCVVTSDSCCKLEC 265
Query: 207 -----NQDSKVIEGREEINT----------------PNTDDVIKVQEE------TKSGPV 239
D I+G+ E + ++ + V E+ TKS P
Sbjct: 266 PEEVMKDDDNDIDGKSESDVLCPQKRRKIAENCGPMDAENEGVSVTEQIVERSCTKSEPE 325
Query: 240 LDTDII--------KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
TD + K+ + EKK ID++ KLYL+PLTTVGNLPFRR+CK GAD+TC EMA
Sbjct: 326 AGTDALTPETDLSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMA 385
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP 351
+ CT LL+
Sbjct: 386 M--------------------------------------CTNLLQ--------------- 392
Query: 352 IEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
Q S LL+R +LFGVQ+CG P + + +L+E++ +DF+D+N+GCPI+
Sbjct: 393 -----GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPID 447
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA 468
+ +G+GS LL + ++S++ + + PIT+K RT + N I + + WGA
Sbjct: 448 IVVNKGAGSALLTKPMRMKSIVEVASGTAEKPITIKVRTAYFEGKNRIDSLIADIGSWGA 507
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
S +T+HGR+R+QRY+K ADWDY+ +CA+ ++ N
Sbjct: 508 SAVTIHGRSRQQRYSKLADWDYVYQCARKAPTTLPVVGN--------------------- 546
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
GD+ S+ D+ + P ++ M+ RGALIKPW
Sbjct: 547 ---------------------------GDVFSFVDWNNHRTECPELATDMVARGALIKPW 579
Query: 589 IFQEIKEKKLFDIYA 603
IF EIKE++ +DI +
Sbjct: 580 IFTEIKEQRHWDISS 594
>gi|327288843|ref|XP_003229134.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Anolis
carolinensis]
Length = 624
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 166/525 (31%), Positives = 247/525 (47%), Gaps = 123/525 (23%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIV 146
+ C +G C + HD ++ +K DI + C +F G C GI CRFG +HL N N+V
Sbjct: 81 EKCLFGAMCPWQHDLEKYIATKLPDIGDCCILFSLFGKCRFGITCRFGGAHLGSNFQNLV 140
Query: 147 KEDV--LKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKI--CKENKASKNENKDTD 202
+++ + + K+ V N+ ++ A +++ + F KS C AS + D
Sbjct: 141 NDELWAVHKGKSAVKNQHLDKAAAALKE------FPFHKSSVYLQCIVKAASMLGIPNVD 194
Query: 203 DCCKNQDSKVIEGREEINTPNTDDVIKVQE---ETKSGPVLDTDIIKIKNSEKKKIDWQG 259
C + + + P + E + G + D D+I+++ EKKK+D++G
Sbjct: 195 SKC-HLPPVIPSLMPSLAHPKSLASRAGSENLAQKTVGVLTDEDLIRLRPCEKKKLDFRG 253
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA-LIKRHESEDLFGV 318
KLYLSPL GNLPFRR+CK++GADITCSE+ + +L + ++ A RHESED FG+
Sbjct: 254 KLYLSPLAKWGNLPFRRICKRFGADITCSEVISSQDLCQGDLEKCAEFFHRHESEDFFGI 313
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ G+ P + KC + L E++ VDFVD+N P+ ++++GSGS L+ N F
Sbjct: 314 QVEGSAPEHMVKCAEFLNERIQVDFVDINAEGPV--LFEKGSGSALMMHPNTF------- 364
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+ +V +D PI
Sbjct: 365 --------------ENIVRGMDYVSNVPI------------------------------- 379
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
TVK R+GI D N+ H +P WGA+++TLHGR +E + ADW+YI CAQ
Sbjct: 380 ---TVKLRSGISLDENLAHTLIPDLHRWGAAMVTLHGRVKESTFRSPADWNYISHCAQ-- 434
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ P PL+G GDI
Sbjct: 435 -----------------------------------------------IAKPMPLFGCGDI 447
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ED ++ K +SGVMIGRGAL+KPWIF EIKE + +DI A
Sbjct: 448 FSFEDVLKA--KQTGVSGVMIGRGALVKPWIFTEIKEMRHWDISA 490
>gi|336363799|gb|EGN92171.1| hypothetical protein SERLA73DRAFT_127726 [Serpula lacrymans var.
lacrymans S7.3]
Length = 646
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 187/606 (30%), Positives = 278/606 (45%), Gaps = 160/606 (26%)
Query: 43 DGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDC-YCPFLKDSTLEQTCKYGEKCKFVHDK 101
+G KK K+ K+ +G NK R F +D C + + C++G +C+F HD
Sbjct: 40 EGGRKKLTKEQKKAQRGANKGR--KFGKIRDDLELCWRVANGKF---CEFGSECRFTHDV 94
Query: 102 NVFMKSKPEDI------------------------------------SEQCYVFLQHGYC 125
++ +KP+DI C F + G C
Sbjct: 95 EAYLAAKPKDIRFPSASNITDTPPFVQELSNTDYESFANGKYPSLDLKTICPGFEEIGEC 154
Query: 126 PMGIACRFGSSH--LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
+G+ CR+ +H +DE+G + D K+ K + +N ++ E + LR Y
Sbjct: 155 RLGLKCRYLGAHAGIDEDGALALVADEEKQMKAGSAAE-LNYVSQEALKLLRSRKYPRPV 213
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT-----DDVIKVQEETKSGP 238
++ KE ++ +QD E RE+I+ + +D I +Q +
Sbjct: 214 TDAYLKELES------------MDQDVSAKEIREKIDNDISQQELDNDAIILQRTGDNIS 261
Query: 239 VLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK 298
+D+ + ++ SEKK++ W+GK YL+PLTTVGNLPFRRLC GADITC EM +AT L
Sbjct: 262 QVDSPDVPMRFSEKKRLRWEGKSYLAPLTTVGNLPFRRLCVSLGADITCGEMGLATSFLS 321
Query: 299 SSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFIY 356
+S +EW+L++RH SE FGVQL GN P + ++L ++ A +DFVDVN GCPI+ ++
Sbjct: 322 ASKEEWSLVRRHPSETTFGVQLAGNKPSTMVPTAEILGKEFAGSIDFVDVNCGCPIDLVF 381
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
+ GSGS LL G L G N + L E P+ + G
Sbjct: 382 RTGSGSALLDTPGKLGKILIGMN--------KALGE------------IPVTVKLRTGVK 421
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHG 475
G R HK MP+ ++ ITLHG
Sbjct: 422 DG---------------------------RNTAHK-------LMPRLGSEFNVGCITLHG 447
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
RTR+QRYTK ADW+YI++C + RTRE+
Sbjct: 448 RTRQQRYTKLADWNYIKQCVEAV--------------------------RTREK------ 475
Query: 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D D P P++G GD S +DY +++++ + G+M+GRGALIKPWIF EIKE
Sbjct: 476 DED--------LPPIPIFGGGDCFSAQDYWSNVEET-GVDGIMVGRGALIKPWIFTEIKE 526
Query: 596 KKLFDI 601
++ +DI
Sbjct: 527 RREWDI 532
>gi|392560397|gb|EIW53580.1| zinc finger dihydrouridine synthase [Trametes versicolor FP-101664
SS1]
Length = 669
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 185/608 (30%), Positives = 270/608 (44%), Gaps = 160/608 (26%)
Query: 44 GTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNV 103
G +KKF K+K+ +G NK R F +D F S + C++G++C+ HD
Sbjct: 61 GAQRKKFAKDKK-QRGANKGR--RFQKVRDDLELCFKVASG--KPCEFGDECRSTHDVAA 115
Query: 104 FMKSKPEDI-----------------------------------SEQCYVFLQHGYCPMG 128
++ +KP+DI + C VF + G C G
Sbjct: 116 YLAAKPKDIHFPSPEDLSNTPPFVRLPDVEMVEDGDASRSSLDVTTTCAVFQRTGECKYG 175
Query: 129 IACRFGSSH--LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEK 186
+ CRF +H L E+G + D K+ + V +N + + + +R Y S+
Sbjct: 176 LKCRFLGNHAKLQESGELELIVDEEKKARAAVAETELNFIDADSLRKIRTKKYPHPISDA 235
Query: 187 ICKENKASKNE-------NKDTD--DCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSG 237
KE + + NE N T D + +EG TP + QE+T
Sbjct: 236 YLKELQDNANEPPKKKEDNPQTTVVDPETAAEPAPVEGAASTETP-----VAAQEDTPDV 290
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
PV + +EKK++ W+GK YL+PLTTVGNLPFRRLC +GADITC EM +A L
Sbjct: 291 PV--------RFAEKKRLHWKGKTYLAPLTTVGNLPFRRLCVDYGADITCGEMGLAMSFL 342
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFI 355
+ S +EW+L++RH SE FG+Q+ G+ P +L +++ + +DFVDVN GCPI+ +
Sbjct: 343 QGSKEEWSLVRRHPSETTFGMQIAGSKPQLLVPAAEIIGRECVGNLDFVDVNCGCPIDLV 402
Query: 356 YKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS 415
YK GSGS LL A G + G N + + D P+ + G
Sbjct: 403 YKTGSGSALLDAAGKLGKIVVGMN-------------KALGDI-------PVTVKLRTG- 441
Query: 416 GSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475
+ G + + ++ P+F GAS ITLHG
Sbjct: 442 -----------------------------VKDGKNTAHKLMPRLAPEF---GASAITLHG 469
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
RTR+QRYTK ADW+YI++C +
Sbjct: 470 RTRQQRYTKLADWEYIKQCVEAVRAREEEED----------------------------- 500
Query: 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+P P++G GD S EDY + ++ G+MIGRGALIKPWIF EIKE
Sbjct: 501 -----------LAPVPIFGGGDCFSSEDYWHKMDNY-NVDGIMIGRGALIKPWIFTEIKE 548
Query: 596 KKLFDIYA 603
++ +DI A
Sbjct: 549 RREWDISA 556
>gi|392577158|gb|EIW70288.1| hypothetical protein TREMEDRAFT_68591 [Tremella mesenterica DSM
1558]
Length = 687
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 195/677 (28%), Positives = 290/677 (42%), Gaps = 195/677 (28%)
Query: 2 DASGVAKIKQEFIVEDH--VKVLSIECVNETDKRKLEELEVEDDGTAK--------KKFK 51
D +G A IK E+++ V S +N T L+V+D+ + KK K
Sbjct: 20 DRAGTALIKPEYLLHPTPLVDNSSTAALNSTSS----HLDVDDEAEGRSSADPREGKKRK 75
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEK--------CKFVHDKNV 103
K+K GQNKAR P ++++ + C+ E CKF HD ++
Sbjct: 76 KDKS-RTGQNKARS-----------FPVIREAV--RICRSWETTGSCNRPVCKFAHDWSM 121
Query: 104 FMKSKPEDI----------------------------------SEQCYVFLQHGYCPMGI 129
++ ++PED+ + C V+ GYCP G
Sbjct: 122 YLSTRPEDVHFEPDGRLQDQEPYVVFEDRKIGGEEGVGKTLDLNTTCPVYKDLGYCPFGW 181
Query: 130 ACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKT----------VNMLANEVRQDLRKHT 178
CRF H+ G VK EW+ G K N V LR +T
Sbjct: 182 RCRFLGGHVRRITEGKQVKTSEEGEWQLVGGQKADEKVGWKFKETNWPDGGVLHRLRTNT 241
Query: 179 YNFEKSEK---ICKENKASKNENKDTDDCCKNQDSKVIEGREEI-----NTPNTDDVIKV 230
Y++ S K + + K K + + ++ EG EE P ++
Sbjct: 242 YDYPFSSKYLHLIEPEKQFTLTRKRPNRSGEEGEANNQEGEEEAMNAMEQKPEIKGLVDG 301
Query: 231 QEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEM 290
+ E LD + ++ EK++++W+G LYL+PLTTVGNLPFRRLC +GA ITCSEM
Sbjct: 302 EAE-----ALD---VPLRPEEKRRLNWEGGLYLAPLTTVGNLPFRRLCISYGATITCSEM 353
Query: 291 AVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNL 348
A+A L+ EWAL++RHE+E +FGVQL G P L +++ +++ VDFVDVNL
Sbjct: 354 ALAQPLIFGQQDEWALVRRHETERMFGVQLAGGYPNRLVPAAEVVRKELGQGVDFVDVNL 413
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
GCPI+ ++ QG+GS LL G L G N + + D P+
Sbjct: 414 GCPIDLVFNQGAGSALLDSPGRLGKILVGMN-------------RALGDI-------PLT 453
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWG 467
++ G +G H +P+F +WG
Sbjct: 454 VKFRTGVANG----------------------------------KPTAHKLIPRFATEWG 479
Query: 468 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527
+TLHGR+R+QRY+K ADW YI+ CA + ++ +P
Sbjct: 480 VGAMTLHGRSRQQRYSKLADWQYIKTCASILR--ESLSEANLP----------------- 520
Query: 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587
P P++GNGD S + Y + ++ S + GVM+ RGALIKP
Sbjct: 521 ---------------------PVPIFGNGDCFSSQSYWQEVESS-GVDGVMVARGALIKP 558
Query: 588 WIFQEIKEKKLFDIYAI 604
WIF EI E++ +DI +
Sbjct: 559 WIFTEISERREWDITGV 575
>gi|332263179|ref|XP_003280632.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
isoform 2 [Nomascus leucogenys]
Length = 408
Score = 257 bits (656), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 187/354 (52%), Gaps = 106/354 (29%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
K + ++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+
Sbjct: 52 KPCRETELDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALL 111
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R
Sbjct: 112 KRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNR 171
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
+ F Q +V ++ L P
Sbjct: 172 STKF---------------------QQIVRGMNQVLDVP--------------------- 189
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK AD
Sbjct: 190 -------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLAD 236
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W YIE+C +
Sbjct: 237 WQYIEEC-------------------------------------------------VKAA 247
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 248 SPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 299
>gi|268553095|ref|XP_002634530.1| Hypothetical protein CBG08326 [Caenorhabditis briggsae]
Length = 551
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 187/600 (31%), Positives = 264/600 (44%), Gaps = 175/600 (29%)
Query: 6 VAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
VA IK+EFI+ EDH ++ + + ++R + + +D A+ + + L
Sbjct: 19 VAPIKEEFILPKEDHELPAEVQALPKRERRGMNKTRRKDMKHAETRIRAAAVRL------ 72
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
CP + CK+GEKC HD + F++ KP DI+ C ++ G
Sbjct: 73 -------------CPSVIQPV---ACKFGEKCNCEHDISAFLEKKPADIASDCPLYDARG 116
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP ACRFG++H+DENG K T N + +++ LRKH Y FEK
Sbjct: 117 ICPFSYACRFGTAHIDENGKQSEKT------PEKPYEATTNCHSMKIQVALRKHDYPFEK 170
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
++ A KNE + + +E
Sbjct: 171 TQNALD---AIKNET----------------------------IGSMWQE---------- 189
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
K K + KK+D YL+PLTTVGNLPFRRLC +GADITC EMA+AT +L + E
Sbjct: 190 --KPKKMDMKKLDRLK--YLAPLTTVGNLPFRRLCVDYGADITCGEMALATSILSGAASE 245
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++L+KRH SE +FGVQL G + K Q++ E VDFVD+N+GCPI+ + ++G G
Sbjct: 246 YSLLKRHPSEKIFGVQLAGGFADTMAKAAQIVVENFDVDFVDINMGCPIDVVNQKGGGCA 305
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
L R N VLT +L + P+ + G G+L+
Sbjct: 306 LPSRPNKLY--------EVLTATKSVLGD------------TPMTVKIRTGQKEGILK-- 343
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
P TV+ FM K LIT H R++EQRYT
Sbjct: 344 ---------------APETVE--------------FMKKNPWHCPDLITFHPRSKEQRYT 374
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K A+WDY A
Sbjct: 375 KLANWDYTIPVA------------------------------------------------ 386
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ +P PL+ GD+LS+EDY E L+K P+++G+MIGRGALIKPWIF EI E++ +DI A
Sbjct: 387 -EAAAPVPLWVCGDVLSWEDYYERLEKYPNVNGIMIGRGALIKPWIFTEIDERRTWDITA 445
>gi|308453103|ref|XP_003089301.1| hypothetical protein CRE_11589 [Caenorhabditis remanei]
gi|308241223|gb|EFO85175.1| hypothetical protein CRE_11589 [Caenorhabditis remanei]
Length = 548
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 189/601 (31%), Positives = 267/601 (44%), Gaps = 178/601 (29%)
Query: 6 VAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
VA IK+EF++ EDH ++ + + ++R + + +D A+ + + + L
Sbjct: 17 VAPIKEEFVLPKEDHELPAEVQALPKRERRGMNKTRRKDMKHAETRIRASAVRL------ 70
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
CP + CK+GEKC HD + F++ KP DI +C +F G
Sbjct: 71 -------------CPSVIQPV---ACKFGEKCNCEHDISAFLEKKPADIDTECPLFDARG 114
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP ACRFGS+HLDENG K + T N + +++ LRKH Y FEK
Sbjct: 115 TCPFSYACRFGSAHLDENGKQTEKS------PSKPYEATTNCHSMKIQVALRKHDYPFEK 168
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
SE N +N+ + ++ K+
Sbjct: 169 SE-----NALESIKNETIGSMWQEKERKL------------------------------- 192
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+ KK+D G YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L + E
Sbjct: 193 -------DMKKLD--GLKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGAASE 243
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++L+KRH SE +FGVQL G + K Q++ E VDFVD+N+GCPI+ + ++G G
Sbjct: 244 YSLLKRHPSEKIFGVQLAGGFADTMAKAAQIVVENFDVDFVDINMGCPIDVVNQKGGGCA 303
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLLQR 422
L R N K ++L V LG CP+ + G G+L+
Sbjct: 304 LPSRPN---------------KLYEVLAATKSV------LGDCPMTVKIRTGQKEGVLK- 341
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
P TV+ FM K LIT H R++EQRY
Sbjct: 342 ----------------APETVE--------------FMKKSPWHCPDLITFHPRSKEQRY 371
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
TK A+WDY A+ +KQ
Sbjct: 372 TKLANWDYTHAVAEA----------------------------------SKQ-------- 389
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIY 602
PL+ GD+LS+EDY E L+ P ++G+MIGRGALIKPWIF EI E++ +DI
Sbjct: 390 -------VPLWVCGDVLSWEDYYERLENHP-VNGIMIGRGALIKPWIFTEIDERRTWDIS 441
Query: 603 A 603
A
Sbjct: 442 A 442
>gi|302840690|ref|XP_002951897.1| hypothetical protein VOLCADRAFT_105302 [Volvox carteri f.
nagariensis]
gi|300262798|gb|EFJ47002.1| hypothetical protein VOLCADRAFT_105302 [Volvox carteri f.
nagariensis]
Length = 894
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 136/367 (37%), Positives = 192/367 (52%), Gaps = 102/367 (27%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+ ++ E++++D++GK YL+PLTTVGNLPFRR+CK G D+TC EMA+AT LL+ EW
Sbjct: 455 LPVRQCERRRLDFRGKTYLAPLTTVGNLPFRRVCKSLGVDVTCGEMALATNLLQGQAAEW 514
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH EDLFGVQ+CG P L + QLL E++ VDFVD+N+GCPI+ +
Sbjct: 515 ALLKRHPCEDLFGVQVCGGYPDALARVGQLLNERLVVDFVDINMGCPIDLV--------- 565
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
GV +C N +GS LL++
Sbjct: 566 ---GVWAGVGVCDKN-----------------------------------AGSALLRQPR 587
Query: 425 ILQSVITCMN-EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
++ ++ + + +P+T KTR G + ++ H F+PK WGA+ +TLHGRTR+QRY+
Sbjct: 588 RIEQILRATSAALGDIPLTFKTRKGFNDGEDVAHTFLPKAAGWGAAAVTLHGRTRQQRYS 647
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K ADWDYI++CA CS + G LI
Sbjct: 648 KLADWDYIQRCAAPCS--------------EAGLQLI----------------------- 670
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKK-------SPSISGVMIGRGALIKPWIFQEIKEK 596
GNGD+ SY D+ + + S++ +MIGRGALIKPWIF EIKE+
Sbjct: 671 ----------GNGDVFSYLDWNRQMDRRETEGEGGGSLASIMIGRGALIKPWIFTEIKEQ 720
Query: 597 KLFDIYA 603
+ +DI A
Sbjct: 721 RHWDISA 727
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141
C +G++CKF HD ++KSKP D+ C CP GI CR+ H E+
Sbjct: 113 CTWGDRCKFSHDLVEYIKSKPADLPGMCPWTAVQATCPYGITCRYAMGHASED 165
>gi|393244519|gb|EJD52031.1| FMN-linked oxidoreductase [Auricularia delicata TFB-10046 SS5]
Length = 660
Score = 255 bits (652), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 195/656 (29%), Positives = 278/656 (42%), Gaps = 176/656 (26%)
Query: 5 GVAKIKQEFIVE-DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
G A +K E+I+ D + + T ++D K+ + NKQ K Q A
Sbjct: 7 GTAPVKAEYIISADPQPAIDDDAAEGTTGTHERGNAGDEDERPSKRARYNKQDRKKQRGA 66
Query: 64 -RGPTFV-TKPEDCYCPFLKDSTLEQTCKYGEK-CKFVHDKNVFMKSKPEDI-------- 112
+G F + E CP + TC E CKF HD ++ +K D+
Sbjct: 67 NKGRRFAQVRDELQLCPKVAGGG---TCDRVETTCKFGHDIGAYLSNKQPDVLFPLPAAL 123
Query: 113 -----------------------SEQCYVFLQHGYCPMGIACRFGSSHL---DENGGNIV 146
+ C V + G C G CRF +HL D+ ++
Sbjct: 124 ADSPPFVAPRESKPTTAYPSVDTAAVCPVHEELGECKFGWKCRFLGAHLRLGDDGKMEML 183
Query: 147 KED---------------VLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKEN 191
+++ K G K LA E + L + EK+ + C +
Sbjct: 184 RDEEKAATKADREETNFIPFATMKALHGRKYPLPLAQEYLKSLEYNRKPAEKAPEACVDV 243
Query: 192 KASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSE 251
A+ D +QD+ + + D I Q DT + ++ E
Sbjct: 244 PAT--------DGTPSQDASAATAADTAPAAHLSDGIGAQ--------TDTPDVPLRAQE 287
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KK++ W+ K YL+PLTTVGNLPFRRLC GADITC EM VAT L+ S +EW+LI+RH
Sbjct: 288 KKRLHWKDKTYLAPLTTVGNLPFRRLCVSLGADITCGEMGVATSFLQGSKEEWSLIRRHP 347
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
SE +FGVQLCGN P L + + + +DFVDVN GCPI+ ++ G+GS LL
Sbjct: 348 SESIFGVQLCGNKPASLVSAAEAIARECGPKIDFVDVNCGCPIDLVFSTGAGSALLDAPT 407
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
G ++VV V
Sbjct: 408 KLG--------------------KIVVGMSRV---------------------------- 419
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADW 488
+ +P+T+K RTG+ N H MP+ R++G +T+HGRTR+QRYTK ADW
Sbjct: 420 ------LGEIPVTIKLRTGVKDGKNTAHKLMPRLPREFGVGAVTIHGRTRQQRYTKLADW 473
Query: 489 DYIEKCA---QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
+YI++CA + S D N L T+
Sbjct: 474 NYIKECADALRQASEDEN---------------LPTI----------------------- 495
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P++G GD SY+ Y +++S + G+MIGRGALIKPWIF EIKEK+ +DI
Sbjct: 496 -----PIFGGGDCFSYQGYASCMEQS-GVDGIMIGRGALIKPWIFTEIKEKREWDI 545
>gi|340384578|ref|XP_003390788.1| PREDICTED: tRNA-dihydrouridine synthase 3-like, partial [Amphimedon
queenslandica]
Length = 335
Score = 254 bits (650), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 138/335 (41%), Positives = 196/335 (58%), Gaps = 51/335 (15%)
Query: 38 LEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKF 97
LEV TA + K+ +GQNK R PT + + CP + TC++G+KC++
Sbjct: 32 LEVTTPQTAPEAPPTKKR--RGQNKHRPPTRLDFSQQ-LCPSFHAK--DYTCRFGDKCRY 86
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
HD +++SKP DIS++CY++ +G CP GIACRFGSSH+ G NI+ + + E +
Sbjct: 87 SHDVKGYLESKPPDISDKCYMYTTYGMCPSGIACRFGSSHISAEGENIINKSLYDEKRI- 145
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
N++ ++ LRK +F +SE+ K
Sbjct: 146 --KSVSNVIEKSLQIALRKKKVSFPRSEEYLKS--------------------------- 176
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
I T SGP D D I +K EKKK+D+ KLYL+PLTTVGNLPFRR+
Sbjct: 177 -IGT--------------SGPCTDEDRISLKPREKKKVDFNNKLYLAPLTTVGNLPFRRI 221
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
CK++GADITCSEMA+A LL+ EWAL+KRHESED+FG+Q+CG++ V+T+C +L+
Sbjct: 222 CKRFGADITCSEMAMAFNLLQGQQSEWALVKRHESEDIFGIQVCGSSVDVMTRCAELINI 281
Query: 338 QMAVDFVDVNLGCPIEFIYKQ-GSGSGLLQRANLF 371
+VDF+D+N GCPI+ ++K+ GSG GL+QR F
Sbjct: 282 HCSVDFIDINCGCPIDLVFKKXGSGCGLMQRKGRF 316
>gi|308493062|ref|XP_003108721.1| hypothetical protein CRE_11115 [Caenorhabditis remanei]
gi|308248461|gb|EFO92413.1| hypothetical protein CRE_11115 [Caenorhabditis remanei]
Length = 548
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 187/601 (31%), Positives = 263/601 (43%), Gaps = 178/601 (29%)
Query: 6 VAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
VA IK+EF++ EDH ++ + + ++R + + +D A+ + + L
Sbjct: 17 VAPIKEEFVLPKEDHELPAEVQALPKRERRGMNKTRRKDMKHAETRIRACAVRL------ 70
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
CP + CK+GEKC HD + F++ KP DI +C +F G
Sbjct: 71 -------------CPSVIQPV---ACKFGEKCNCEHDISAFLEKKPADIDTECPLFDARG 114
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP ACRFG +HLDENG K + T N + +++ LRKH Y FEK
Sbjct: 115 TCPFSYACRFGLAHLDENGKQTEKS------PSKPYEATTNCHSMKIQVALRKHDYPFEK 168
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
SE N +N+ + ++ K+
Sbjct: 169 SE-----NALESIKNETIGSMWQEKERKL------------------------------- 192
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+ KK+D G YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L + E
Sbjct: 193 -------DMKKLD--GLKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGAASE 243
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++L+KRH SE +FGVQL G + K Q++ E VDFVD+N+GCPI+ + ++G G
Sbjct: 244 YSLLKRHPSEKIFGVQLAGGFADTMAKAAQIVVENFDVDFVDINMGCPIDVVNQKGGGCA 303
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLLQR 422
L R N K ++L V LG CP+ + G G+L+
Sbjct: 304 LPSRPN---------------KLYEVLAATKSV------LGDCPMTVKIRTGQKEGVLK- 341
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
P TV+ FM K LIT H R++EQRY
Sbjct: 342 ----------------APETVE--------------FMKKSPWHCPDLITFHPRSKEQRY 371
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
TK A+WDY A
Sbjct: 372 TKLANWDYTHAVA----------------------------------------------- 384
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIY 602
+ P PL+ GD+LS+EDY E L+ P ++G+MIGRGALIKPWIF EI E++ +DI
Sbjct: 385 --EASKPVPLWVCGDVLSWEDYYERLENHP-VNGIMIGRGALIKPWIFTEIDERRTWDIS 441
Query: 603 A 603
A
Sbjct: 442 A 442
>gi|320168070|gb|EFW44969.1| tRNA-dihydrouridine synthase 3 [Capsaspora owczarzaki ATCC 30864]
Length = 741
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 189/356 (53%), Gaps = 105/356 (29%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
++ EKK ID++ KLYL+PLTTVGNLP+RRLCK++G DITCSEMA+A +L++ QEWA
Sbjct: 381 RVHLREKKLIDFRNKLYLAPLTTVGNLPYRRLCKEFGVDITCSEMAMAVKLIQGEAQEWA 440
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
L KRH SED+FGVQLCG N V+ +LL +DF+DVN GCPI+ + ++G GS LL
Sbjct: 441 LTKRHASEDIFGVQLCGGNVEVMGNAAELLSNHCELDFIDVNCGCPIDLVVERGQGSALL 500
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
R + +E I K G+LQ
Sbjct: 501 SRPSR------------------------------------LETIAK-----GMLQ---- 515
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
VS++PIT+K RTG +D + H +P+ + G SL+TLHGRTR QRY++
Sbjct: 516 ----------VSTVPITIKLRTGFSEDRLVAHTLIPRLANLGVSLVTLHGRTRAQRYSRL 565
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW YI +CA+ TL
Sbjct: 566 ADWQYINQCAEAAP---------------------TL----------------------- 581
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+YGNGDI+SY++ E +K+ +SG+M+ RGALIKPW+F EIKE + +DI
Sbjct: 582 -----PVYGNGDIMSYQEAMEHREKT-KVSGLMLARGALIKPWVFTEIKESRTWDI 631
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 81 KDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDE 140
K ++ TC +G+KC+FVH++ + IS+QC FLQ+G C G+ACRF S H D
Sbjct: 158 KQFAIKGTCSFGDKCRFVHEREA---NSDAVISDQCPFFLQYGQCKFGLACRFRSGHTDA 214
Query: 141 NGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK 189
+ IV E + +N+ EV + Y F +++++ +
Sbjct: 215 DNKPIVDEAKWLATQEAREKSVLNVPQREVLFATSRRKYQFPRTKEMLR 263
>gi|410075147|ref|XP_003955156.1| hypothetical protein KAFR_0A05860 [Kazachstania africana CBS 2517]
gi|372461738|emb|CCF56021.1| hypothetical protein KAFR_0A05860 [Kazachstania africana CBS 2517]
Length = 647
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 204/617 (33%), Positives = 296/617 (47%), Gaps = 124/617 (20%)
Query: 2 DASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVL-KGQ 60
D+ G+A +K E+IV V D+ + D GT KKK N + +GQ
Sbjct: 23 DSKGIAHLKPEYIVS--TVTSHAAPVQYNDEEQTSSDRQLDSGTNKKKNYNNNKKKKRGQ 80
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---DISEQC 116
NK R V K ++ CP L S + C +GE C+F HD ++K K PE D + C
Sbjct: 81 NKDRDNRQV-KEKNALCPKLIVSGNPEDCLFGETCRFNHDVEAYLKDKKPEIKVDTFKVC 139
Query: 117 YVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
V+ GYCPMG CRF S+H E+ V TV NK +N +A + + DL K
Sbjct: 140 PVWETLGYCPMGYKCRFLSTHSTESKPTNV----------TVANKELNHIAFDKKSDLIK 189
Query: 177 HTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQE---E 233
+ FEKSE+I + + + E +D K+ D+ E NT +T D +V+ E
Sbjct: 190 KRFPFEKSEEILEILDSFQQEQRD----LKSNDNT----EEATNTASTVDCPQVRHRNAE 241
Query: 234 TKSGPVLDTDI------IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITC 287
S D+ + ++EKK +D++ K LSPLTTVGNLP+RRL K+G D+T
Sbjct: 242 VDSKRERQKDLYNKYKDTRYWSNEKKSLDFKRKKILSPLTTVGNLPYRRLMVKYGCDVTY 301
Query: 288 SEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDV 346
SEMA+ L++ + EWAL K H SE +GVQ+ + + K T+ L + V+ V++
Sbjct: 302 SEMALGVPLIQGTNSEWALPKCHSSEKEYGVQIACSKQWQAAKATEALVSHINNVNEVNL 361
Query: 347 NLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406
N GCPI+ +Y+QGSGS LL +NP L +C
Sbjct: 362 NSGCPIDLLYRQGSGSALL------------DNPARLIRC-------------------- 389
Query: 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRD 465
+ MN VS +P+TVK R+G KD + I + + K
Sbjct: 390 -----------------------LNSMNYVSGDVPVTVKIRSGT-KDGHAIADSLVKRLV 425
Query: 466 W--GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
W + ITLHGR+R+QRYTK ADWDY+ A+ R++ + + +F+D H
Sbjct: 426 WETDVAAITLHGRSRQQRYTKLADWDYVSLTAKSL-RESELEFSQSEQFKD-------SH 477
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
R + P GNGD+ ++ED+ L +I +M+ RGA
Sbjct: 478 SRDK---------------------PIQFVGNGDVNNWEDWYRILDGDSNIDSIMVARGA 516
Query: 584 LIKPWIFQEIKEKKLFD 600
LIKPWIF+EI+ ++ D
Sbjct: 517 LIKPWIFEEIESQQYLD 533
>gi|313234425|emb|CBY24624.1| unnamed protein product [Oikopleura dioica]
Length = 636
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 183/588 (31%), Positives = 260/588 (44%), Gaps = 128/588 (21%)
Query: 21 VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPED----CY 76
L E ++ KR+ E L VE +K+ K + + +GQNK RG F K +D C
Sbjct: 58 TLVTENGSDGQKRESEALAVET--PPEKRVKVSGKKERGQNKNRGQHFEDKLDDKKKICR 115
Query: 77 CPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS----EQCYVFLQHGYCPMGIACR 132
+ E++ CK+ HD+ + +D+ C + ++GYC GI+CR
Sbjct: 116 AYMKGECDREESA-----CKWSHDEMSIYNEREQDLGLVLGMSCPTYEKYGYCHYGISCR 170
Query: 133 FGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENK 192
F SH+ G + + N + LR + Y F K+ KE
Sbjct: 171 FCDSHVTSKDGKLENHKHPTVEHRRIDYYESNRVNGAFLTMLRSNRYAFSKTVSSLKE-- 228
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEK 252
KN K+ + +GR D++ K + + L + + EK
Sbjct: 229 LPKNLQP------KHMGKTIRKGRH--GHYAQDEIPKECYASNNAERLGA----VADGEK 276
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K +D++GK YL+PLTTVGN+PFRR+CK +G DITC EMA L+ EWAL++RH S
Sbjct: 277 KTLDFRGKSYLAPLTTVGNMPFRRVCKDYGVDITCGEMATCRNLVMGKMSEWALVQRHAS 336
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED FGVQ+ G P L+K +L+ E VDF+D+N GCP++ I K G G L
Sbjct: 337 EDFFGVQIAGAWPDELSKTAELISEFCDVDFIDINCGCPLDLICKTGGGCRL-------- 388
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
G P L C I+
Sbjct: 389 ----GKAPDKLAGC-------------------------------------------ISS 401
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
M S LP+T K RTG +++ H + K ++ +LITLHGR+R RYT A WDYI
Sbjct: 402 MKTTSGLPVTCKIRTGWEPQHDMAHKLIAKLKEAQPALITLHGRSRICRYTGVARWDYIN 461
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+C++ S K+ D P
Sbjct: 462 ECSEASS------------------------------EVAKEID-------------VPF 478
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+GNGD+LSY DY E+++K G MIGRGALIKPW+F+EIKE+K+ D
Sbjct: 479 FGNGDVLSYSDYAEAIEKY-GTDGAMIGRGALIKPWVFEEIKEQKVMD 525
>gi|384245556|gb|EIE19049.1| FMN-linked oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 669
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 140/353 (39%), Positives = 184/353 (52%), Gaps = 104/353 (29%)
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
EK++ID++GKLYL+PLTTVGNLPFRR+CK+ GADITC EMA+AT LL+ EWAL+KRH
Sbjct: 300 EKRRIDFKGKLYLAPLTTVGNLPFRRVCKQLGADITCGEMALATNLLQGQASEWALLKRH 359
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
SEDLFGVQ+CG L +C QLLEE + DFVDVN+GCPI+ + +G+GS LL
Sbjct: 360 PSEDLFGVQVCGGYADSLARCAQLLEEHVDADFVDVNMGCPIDLVCNRGAGSSLL----- 414
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
N P Q +E Q + + S++
Sbjct: 415 -------NKP-------QRIE-----------------------------QISRSMSSIL 431
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+C P+T+K R G + ++ +H ++PK WG S TLHGRTR+QRYTK ADW+Y
Sbjct: 432 SC-------PLTIKVRKGYYDGDDNVHAWLPKAPSWGVSAATLHGRTRQQRYTKLADWEY 484
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I+ G LI
Sbjct: 485 IQSATAAAP----------------GLQLI------------------------------ 498
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGDI+S+ +Y E P ++ VM RGALIKPW+F EIKE++ +DI A
Sbjct: 499 ---GNGDIMSFTEYNERTVACPDLATVMFARGALIKPWLFTEIKEQRHWDISA 548
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 28/188 (14%)
Query: 5 GVAKIKQEFIVEDHVK-VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
G+A IK+E+I + + + + +R +V + +++K KK Q +A
Sbjct: 15 GLAPIKREYIRKAAPRGTIDDKIYKAEQQRNNGASKVASEKKSRRKMKKAMHPKASQFRA 74
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ-- 121
F + C YG+KCKF HD + +K D+ +C
Sbjct: 75 GDLCF--------------NHARDQCPYGDKCKFNHDIVAYAAAKQPDLPGRCPSSAMPE 120
Query: 122 --HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
+G C F S HL +++ + T N L +++ LR+ TY
Sbjct: 121 CPYGRCLHTCCLTFCSEHL---------QNMHARMPDLPEPPTTNTLDKDLQGSLRRSTY 171
Query: 180 NFEKSEKI 187
+F +++++
Sbjct: 172 DFGRAQEV 179
>gi|239788483|ref|NP_001155091.1| tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform 2 [Homo
sapiens]
gi|13528705|gb|AAH04549.1| DUS3L protein [Homo sapiens]
gi|119589550|gb|EAW69144.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_c [Homo
sapiens]
gi|325463133|gb|ADZ15337.1| dihydrouridine synthase 3-like (S. cerevisiae) [synthetic
construct]
Length = 408
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 186/357 (52%), Gaps = 112/357 (31%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
K + ++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 52 KTCRETELDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV--------------- 96
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
CT LL+ QM S LL+R
Sbjct: 97 -----------------------CTNLLQGQM--------------------SEWALLKR 113
Query: 368 ---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+
Sbjct: 114 HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRST 173
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
Q ++ MN+V +P+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 174 KFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 233
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 234 LADWQYIEECVQ------------------------------------------------ 245
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 246 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 299
>gi|366998884|ref|XP_003684178.1| hypothetical protein TPHA_0B00720 [Tetrapisispora phaffii CBS 4417]
gi|357522474|emb|CCE61744.1| hypothetical protein TPHA_0B00720 [Tetrapisispora phaffii CBS 4417]
Length = 673
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 205/624 (32%), Positives = 292/624 (46%), Gaps = 117/624 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEE---LEVEDDGTAKKKFKKNKQVLKGQN 61
GVA +K+E+I+ D SI N+ ++ E+ LE + DG K K K + +GQN
Sbjct: 27 GVAYLKKEYILVDSGSSRSIAEYNDEEEAGAEDRPGLEAQGDGRRKGKGKGRNKKDRGQN 86
Query: 62 KARGPTFVTKPEDCYCP--FLKDSTLE----QTCKYGEKCKFVHDKNVFMKSK-PEDISE 114
K R V + + CP D T E C +G+ C+FVH+ ++ SK PE +SE
Sbjct: 87 KNRDLRQVKEAKQL-CPKYIQGDPTAEGAAGPVCAFGDNCRFVHNIQEYLDSKKPEIVSE 145
Query: 115 Q---CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT-VGNKTVNMLANEV 170
C VF GYCPMG C+F SSH D++ + K E K N VN+++ +
Sbjct: 146 AFPTCPVFETLGYCPMGFKCKFLSSHYDKDHMELFKRGTEDERKKLWDANHEVNIISGDQ 205
Query: 171 RQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEG--REEINTPNTDDVI 228
+ DL K + F K+ I + + E +D NQ S EG ++E + P TD
Sbjct: 206 KFDLIKRKFPFTKTAHILDIIDSIQQEARDR----INQPSANKEGDKKDEESKPATDAPQ 261
Query: 229 KVQEETKSGP--------VLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKK 280
V+ E + L + EKK +D++GK +SPLTTVGNLP+RRL KK
Sbjct: 262 IVEREKELNERREKQRELYLQYKDTRYFAQEKKTLDFRGKKIVSPLTTVGNLPYRRLMKK 321
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQ 338
GADIT SEMA+AT L++ + EWAL K H SE FGVQ+ C L
Sbjct: 322 LGADITYSEMALATPLIQGTNSEWALPKAHVSEYPGFGVQIACSKAWQAAKAAEALSTNC 381
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
+ +++N GCPI+ +YKQGSGS LL +N + +C
Sbjct: 382 SNISEINLNSGCPIDLLYKQGSGSALL------------DNAARMIRC------------ 417
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIH 457
+ MN VS+ +PI+VK RTG + I
Sbjct: 418 -------------------------------LNAMNYVSNDVPISVKIRTGTKDSHPIAD 446
Query: 458 NFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+ + + + ITLHGR+R+QRYT+ ADWDYI K A+ + +F +
Sbjct: 447 TLVKRLVFETDVAAITLHGRSRQQRYTRSADWDYISKVAK-------SLREAESEFAESP 499
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
+ G+TR Q GNGDI ++ED+T L+ +I
Sbjct: 500 QGKESRDGKTRIQ----------------------FVGNGDIYNFEDWTNILQNDHNIDS 537
Query: 577 VMIGRGALIKPWIFQEIKEKKLFD 600
+M+ RGALIKPWIF+EI ++ D
Sbjct: 538 IMVARGALIKPWIFEEIDSQQYID 561
>gi|226492326|ref|NP_001145737.1| uncharacterized protein LOC100279244 [Zea mays]
gi|219884231|gb|ACL52490.1| unknown [Zea mays]
gi|224031411|gb|ACN34781.1| unknown [Zea mays]
gi|413917958|gb|AFW57890.1| hypothetical protein ZEAMMB73_676116 [Zea mays]
Length = 686
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 199/662 (30%), Positives = 280/662 (42%), Gaps = 186/662 (28%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A VA +K F+ V+ E K EE + G K KK+K+ LK + +
Sbjct: 34 ARAVAPVKPAFLCPPPVR--------EAPK---EEGKAAGGGAVVKVEKKSKRQLKRERQ 82
Query: 63 ARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQC-YVFLQ 121
K C + S +CKYG C F HD N ++ KP D+ C + L
Sbjct: 83 QE-----QKSTSHLCIEVGKSGNVDSCKYGTSCHFSHDINAYLSQKPADLEGTCPFTALG 137
Query: 122 HGYCPMGIACRFGSSHLDENG------GNIVKEDVLKE-----WKNTV------------ 158
H CP G+ CRF S+H D GN + + KE WK+
Sbjct: 138 H-LCPYGLTCRFLSTHKDNLAPQNHPEGNCERNPLSKEIQKLLWKSKYKFPKASAQIKLL 196
Query: 159 ----GNKTVNMLANEVRQD------------LRKHTYNFEKSEKICKENKASKNENKDTD 202
GNK N+ D L N E +CKE S E D
Sbjct: 197 GLKDGNKNKAEAVNDDNPDETCNLNGDDKTLLSSIPENVEPDPTLCKEIDNSGGEPLVVD 256
Query: 203 D-------CCKNQDSKVIEGRE-EINTPNT-----------DDVIKVQEETKSGPVLDTD 243
K +V E R+ EI P T + + V+ + + D
Sbjct: 257 SVESVEPRASKKSKVEVDETRDNEIKGPTTGIHDNEAESEVNSISGVKVSSNNQSSCKVD 316
Query: 244 IIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
+I I + EKK ID++ KLYL+PLTTVGNLPFRRLCK GAD+TC EMA+
Sbjct: 317 LITIPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGADVTCGEMAM---------- 366
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
CT LL+ Q S
Sbjct: 367 ----------------------------CTNLLQ--------------------GQASEW 378
Query: 363 GLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
LL+R +LFGVQ+CG P + + +L++ + VDF+D+N+GCPI+ + +G+GS L
Sbjct: 379 ALLRRHPSEDLFGVQICGPYPDTVARTVELVDNECSVDFIDINMGCPIDIVVNKGAGSSL 438
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
L + ++S++ + V+ P+TVK RT + N + + +WGAS IT+HGR+R+
Sbjct: 439 LTKPMRIRSIVQAASTVTEKPLTVKVRTAFFEGRNRADSLVSDIYNWGASAITIHGRSRQ 498
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
QRY+K ADWDYI +CAQ K D+ +
Sbjct: 499 QRYSKLADWDYIYQCAQ------------------------------------KAPDYLH 522
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
+ GNGD+ S+ D+ + + IS MI RGALIKPW+F EIKE++ +
Sbjct: 523 V------------IGNGDVFSFTDWNKHVSDCSKISTCMIARGALIKPWLFTEIKEQRHW 570
Query: 600 DI 601
DI
Sbjct: 571 DI 572
>gi|341880472|gb|EGT36407.1| hypothetical protein CAEBREN_19524 [Caenorhabditis brenneri]
Length = 548
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 187/603 (31%), Positives = 267/603 (44%), Gaps = 178/603 (29%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQN 61
+ VA IK+EFI+ E++ ++ + + ++R + + +D A+ + + L
Sbjct: 15 ANVAPIKEEFILPKEEYELPAEVQALPKRERRGMNKSRRKDMKHAETRIRAAAVRL---- 70
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
CP + CK+GEKC HD + F++ KP DIS +C ++
Sbjct: 71 ---------------CPSVIQPV---ACKFGEKCNCEHDISAFLEKKPADISSECPLYDV 112
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
G CP ACRFGS+H+DE+G K T N + +++ LRKH Y+F
Sbjct: 113 RGTCPFSYACRFGSAHIDESGKQAEKT------PEKPYEATTNCHSMKIQVALRKHEYDF 166
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
K+EK + A KNE + + +E P L
Sbjct: 167 GKTEKALE---AIKNET----------------------------IGAMWQE----PKLK 191
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
D+ KK+D GK YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L +
Sbjct: 192 LDM--------KKLD--GKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGAA 241
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
E++L+KRH SE +FGVQL G + K Q++ E VDFVD+N+GCPI+ + ++G G
Sbjct: 242 SEYSLLKRHPSEKIFGVQLAGGFADTMAKAAQIVVENFDVDFVDINMGCPIDVVNQKGGG 301
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLL 420
L R N K ++L V LG P+ + G G+L
Sbjct: 302 CSLATRPN---------------KLHEVLAATKSV------LGDVPMTVKIRTGLKEGIL 340
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+ ++ FM K LIT H R++EQ
Sbjct: 341 KAPETIE-------------------------------FMKKNPYHLPDLITFHPRSKEQ 369
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK A+WDY P F
Sbjct: 370 RYTKLANWDYTH-----------------PVF---------------------------- 384
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ P PL+ GD+LS+EDY E L+ P +G+MIGRGALIKPWIF EI E++ +D
Sbjct: 385 ----EAAKPVPLWVCGDVLSWEDYYERLENYPC-NGIMIGRGALIKPWIFTEIDERRTWD 439
Query: 601 IYA 603
I A
Sbjct: 440 ITA 442
>gi|17543114|ref|NP_500379.1| Protein Y37E11B.5 [Caenorhabditis elegans]
gi|351065370|emb|CCD61343.1| Protein Y37E11B.5 [Caenorhabditis elegans]
Length = 554
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 179/599 (29%), Positives = 261/599 (43%), Gaps = 168/599 (28%)
Query: 6 VAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
VA IK+++I+ EDH ++ + + ++R + + +D A+ + + L
Sbjct: 13 VAPIKEQYILPKEDHELPAEVQALPKRERRGMNKTRRKDMKHAETRIRAAAVRL------ 66
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
CP + CK+GEKC HD + F+ KP DI C ++ G
Sbjct: 67 -------------CPSVIQPV---ACKFGEKCNCEHDISAFLAKKPADIGVACPLYDARG 110
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
CP ACRFG +HLDE G K T N + +++ LRK Y+FEK
Sbjct: 111 ACPFSYACRFGGAHLDEAGQQSEKS------PEKPYEPTTNCHSMKIQVALRKREYDFEK 164
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
+EK + A KNEN + + + + ++ +N + D
Sbjct: 165 TEKALE---AIKNENFEVLELSLSTVGAMCREKKPLNMGSLD------------------ 203
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
GK YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L + E
Sbjct: 204 ---------------GKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASE 248
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++L+KRH E +FGVQL G + K +Q++ E VDF+D+N+GCPI+ + ++G G
Sbjct: 249 YSLLKRHPCEKIFGVQLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCA 308
Query: 364 LLQRAN-LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
L R LF V + VL C CP+ + G G+L+
Sbjct: 309 LPSRPQKLFEVLAATKS--VLGGC------------------CPLTVKIRTGMKEGVLKA 348
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
++ H + H LIT H R++EQRY
Sbjct: 349 PEYVE----------------------HMKKHSWHT---------PDLITFHPRSKEQRY 377
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
T+ A+WD+ Q TK
Sbjct: 378 TRLANWDFTFPV----------------------------------QEATK--------- 394
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P PL+ GDILS+EDY E L++ P ++G+MIGRGALIKPWIF EI E++ +DI
Sbjct: 395 ------PVPLWVCGDILSWEDYYERLEQYP-VNGIMIGRGALIKPWIFTEIDERRTWDI 446
>gi|321261612|ref|XP_003195525.1| tRNA dihydrouridine synthase [Cryptococcus gattii WM276]
gi|317461999|gb|ADV23738.1| tRNA dihydrouridine synthase, putative [Cryptococcus gattii WM276]
Length = 725
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 183/632 (28%), Positives = 268/632 (42%), Gaps = 171/632 (27%)
Query: 48 KKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
K K++K KGQNK R + + C + + + G+ C++ H + +
Sbjct: 78 KPNKQDKNDKKGQNKGRHFPVIREASVRICRAWETTGICDRADKGD-CRYAHSWEGYFEV 136
Query: 108 KPEDISEQ----------------------------------CYVFLQHGYCPMGIACRF 133
KP DIS + C V GYCP G CRF
Sbjct: 137 KPNDISYRPDWLLVGEAPFVVAGERVVGGEDVVGKTLDLDTVCPVLKDLGYCPFGWRCRF 196
Query: 134 GSSHLDENGGNIVKEDVLKE---------WK----------NTVGNKTVNMLANEVRQDL 174
+H+ + E+ KE W+ N K N EV L
Sbjct: 197 LGAHVKRTTAPVDGEEKEKEAGPEKRMGDWQIEHWVQSEVENGWKQKETNWPEQEVLNAL 256
Query: 175 RKHTYNFEKSEKICKE---NKASKNENKDTDDCCKNQDSKVIEGREEINTP-----NTDD 226
R+ T +F SE K+ +K +NK + + + V++ E N P DD
Sbjct: 257 RRSTASFPFSEAYLKKVDPDKPFTLQNKKPTKQPQKRKNIVLDEEEAANGPIAVTSAGDD 316
Query: 227 VIKV-------QEETKSGPVLDTDIIKI--KNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
Q E K +T+ I + + EK++++W+G YL+PLTTVGNLPFRRL
Sbjct: 317 EESAMNATGNEQNEEKGRVYGETEAIDVPPRPEEKRRLNWEGGRYLAPLTTVGNLPFRRL 376
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
C +GA IT SEMA+A L+ + +EWAL++RHESE +FG+Q+ G P + +++
Sbjct: 377 CVDYGATITISEMALAQPLVYGAKEEWALVRRHESEKMFGLQVAGGFPNRMVPAAEIIAN 436
Query: 338 QM----AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
+ VDFVDVN+GCPI+ ++ QG+GS L+ G L G N L E
Sbjct: 437 TIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN-------RALGEIP 489
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
+ V F RTG+
Sbjct: 490 LTVKF-----------------------------------------------RTGVAHGK 502
Query: 454 NIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
H +P+F +WG +T+HGR+R+QRY+K ADWDYI+ C + + ++ +P
Sbjct: 503 PNAHKLIPRFATEWGVRALTIHGRSRQQRYSKPADWDYIKTC--VTTLRESVADANLP-- 558
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
P P++GNGD S Y E ++KS
Sbjct: 559 ------------------------------------PVPIFGNGDCFSAASYYEEMEKS- 581
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDIYAI 604
+ GVM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 582 GVDGVMVARGALIKPWIFTEIKERREWDISAV 613
>gi|341878027|gb|EGT33962.1| hypothetical protein CAEBREN_05960 [Caenorhabditis brenneri]
Length = 548
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 186/603 (30%), Positives = 266/603 (44%), Gaps = 178/603 (29%)
Query: 4 SGVAKIKQEFIV--EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQN 61
+ VA IK+EFI+ E++ ++ + + ++R + + +D A+ + + L
Sbjct: 15 ANVAPIKEEFILPKEEYELPAEVQALPKRERRGMNKSRRKDMKHAETRIRAAAVRL---- 70
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
CP + CK+GEKC HD + F++ KP DIS +C ++
Sbjct: 71 ---------------CPSVIQPV---ACKFGEKCNCEHDISAFLEKKPADISSECPLYDA 112
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
G CP ACRFGS+H+DE+G K T N + +++ LRKH Y+F
Sbjct: 113 RGTCPFSYACRFGSAHIDESGKQAEKT------PEKPYEATTNCHSMKIQVALRKHEYDF 166
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
K+EK + A KNE + + +E P L
Sbjct: 167 GKTEKALE---AIKNET----------------------------IGAMWQE----PKLK 191
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
D+ KK+D GK YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L +
Sbjct: 192 LDM--------KKLD--GKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGAA 241
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
E++L+KRH SE +FGVQL G + K Q++ E VDFVD+N+GCPI+ + ++G G
Sbjct: 242 SEYSLLKRHPSEKIFGVQLAGGFADTMAKAAQIVVENFDVDFVDINMGCPIDVVNQKGGG 301
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLL 420
L R N K ++L V LG P+ + G G+L
Sbjct: 302 CSLATRPN---------------KLHEVLAATKSV------LGDVPMTVKIRTGLKEGIL 340
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+ ++ FM K LIT H R++EQ
Sbjct: 341 KAPETIE-------------------------------FMKKNPYHLPDLITFHPRSKEQ 369
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYTK A+W Y P F
Sbjct: 370 RYTKLANWHYTH-----------------PVF---------------------------- 384
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ P PL+ GD+LS+EDY E L+ P +G+MIGRGALIKPWIF EI E++ +D
Sbjct: 385 ----EAAKPVPLWVCGDVLSWEDYYERLENYPC-NGIMIGRGALIKPWIFTEIDERRTWD 439
Query: 601 IYA 603
I A
Sbjct: 440 ITA 442
>gi|359322130|ref|XP_003639790.1| PREDICTED: tRNA-dihydrouridine synthase 3-like isoform 2 [Canis
lupus familiaris]
Length = 408
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 186/357 (52%), Gaps = 112/357 (31%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
K S++ ++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 52 KPSQEIELDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV--------------- 96
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
CT LL+ Q S LL+R
Sbjct: 97 -----------------------CTNLLQGQT--------------------SEWALLRR 113
Query: 368 ---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+
Sbjct: 114 HPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSA 173
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
Q ++ MN+V +P+TVK RTG+ + N+ H +P+ R+WGA+L+TLHGR+REQRYTK
Sbjct: 174 KFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTK 233
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C
Sbjct: 234 LADWQYIEQC-------------------------------------------------V 244
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILSYED +++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 245 TAASPMPLFGNGDILSYEDANRAMQT--GVAGVMIARGALLKPWLFTEIKEQRHWDI 299
>gi|403214548|emb|CCK69049.1| hypothetical protein KNAG_0B06190 [Kazachstania naganishii CBS
8797]
Length = 646
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 185/622 (29%), Positives = 286/622 (45%), Gaps = 139/622 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A++K ++IV + N+ D+ + + +K KK + +GQNK R
Sbjct: 28 GIAQLKPQYIVAVGGQPRQ---SNDDDEEEPSSDRFAGESNSKGTRKKKR---RGQNKDR 81
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS-----EQCYVF 119
V + + CP L S C +G C++ HD+ ++++ K +I E C V+
Sbjct: 82 DNRQV-REANVLCPKLVQSGDASDCPWGGACRYNHDRALYLQGKAPEIRSEVFVEGCPVW 140
Query: 120 LQHGYCPMGIACRFGSSHLDENG-----GNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
G CPMG C+F SSH+D + G+ E L + N+ +N ++ + DL
Sbjct: 141 KTLGRCPMGYKCKFLSSHMDSDTLQLRVGDPPNEGGLAPY---AINREINHISGAEKTDL 197
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEIN-----TPNTDDVIK 229
K ++F KSE++ A + E +D+ + RE N P K
Sbjct: 198 VKKRFDFPKSEEVLFIIDAIQQEQRDS-----------MAERERANLSVDTAPQVAQRNK 246
Query: 230 VQEETKSG------PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
++E + DT I EK+K+D++GK LSPLTTVGNLP+RRL KK G
Sbjct: 247 AEQEHRDKQKETYLKYKDTRYFAI---EKRKLDYKGKKILSPLTTVGNLPYRRLMKKLGC 303
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESED-LFGVQLCGNNPYVLTKCTQLLEEQM--A 340
D+T SEMA++ L++ + EWAL K H SE FGVQ+ + P+ +K + L +
Sbjct: 304 DVTYSEMALSVPLIQGTNSEWALPKAHVSEQGGFGVQVAASKPWQASKAAEALAQYTGSG 363
Query: 341 VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
++ +++N GCPI+ +Y+QG+GS LL +NP + +C
Sbjct: 364 INEINLNSGCPIDLLYRQGAGSALL------------DNPAKMIRC-------------- 397
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNF 459
+ M+ VS +P+TVK RTG + I
Sbjct: 398 -----------------------------LNAMSYVSGDIPVTVKIRTGTRDSHPIADTL 428
Query: 460 MPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
M + + S +TLHGR+R+QRYTK ADWDYI K A+ R++ A
Sbjct: 429 MKRLVFETDVSAVTLHGRSRQQRYTKVADWDYIGKTARA--------------LREYEAE 474
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
T GR R + GNGD+ ++ED+ L++ P + +M
Sbjct: 475 YGTSGGRDRTR--------------------VQFIGNGDVNNWEDWHRYLQEIPEMDSIM 514
Query: 579 IGRGALIKPWIFQEIKEKKLFD 600
+ RGALIKPWIF+EI ++ D
Sbjct: 515 VARGALIKPWIFEEIDAEQYLD 536
>gi|449461637|ref|XP_004148548.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Cucumis sativus]
gi|449519930|ref|XP_004166987.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Cucumis sativus]
Length = 698
Score = 245 bits (625), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 186/675 (27%), Positives = 294/675 (43%), Gaps = 200/675 (29%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKK---KFKKNKQVLKG 59
A +A +K++F+ ++ S + T K + DD A K KK+K+ LK
Sbjct: 38 AKAIAPVKRDFLRPPPLRSSSNNLKDATSTAKNDG----DDKAAPSTLVKEKKSKRQLKR 93
Query: 60 QNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVF 119
+ + K CP + + +C+Y +KC+F HD F KP D+ +C
Sbjct: 94 ERRQE-----QKSTRHLCPEIAKTGDVSSCRYSDKCRFSHDIEAFKSQKPADLEGECPFS 148
Query: 120 LQHGYCPMGIACRFGSSH----------------------------LDENGGNIVKED-- 149
CP G+ACRF +H L +N K D
Sbjct: 149 GAEQLCPYGLACRFAGTHKEGVPAGSSVTLKRCSEMNGLNKDIQKLLWKNKMKFPKADSK 208
Query: 150 ---------------VLKEWKNTVGNKTV-------NMLANEVRQDL------------R 175
V ++ +N V N +V + + N++ DL +
Sbjct: 209 LKELGLLGHGKSKLRVKEDEENAVSNDSVVADRPCCSEMNNDLDADLEISVEVPEENGEK 268
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQ---DSKVIEGREEINTPNTDDVIKVQE 232
+ T++ ++S + K++K+ +EN +D D + EG I + +D +
Sbjct: 269 EGTFSSDESRPL-KKSKSLSSENFHSDQIDNGACMIDETIGEGHAPIESEAMNDSV---- 323
Query: 233 ETKSGPVLDTDI-IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
+LD+D +K EKK ID++ KLYL+PLTTVGNLPFRR+CK GAD+T
Sbjct: 324 ------LLDSDASLKPHPREKKLIDFRDKLYLAPLTTVGNLPFRRVCKVLGADVT----- 372
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP 351
CG + CT LL+
Sbjct: 373 -----------------------------CGE----MAMCTNLLQ--------------- 384
Query: 352 IEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
Q S LL+R +LFGVQ+CG P +++ +L++++ V+DF+D+N+GCPI+
Sbjct: 385 -----GQASEWALLRRHSSEDLFGVQICGAYPDTVSRAVELIDKECVLDFIDINMGCPID 439
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA 468
+ +G+GS LL + +++V+ + + PIT+K RTG ++ N I + + +WGA
Sbjct: 440 IVVNKGAGSALLTKPMRMKTVVEAASGIVDTPITIKVRTGYYEGKNRIDSLIADIGNWGA 499
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
S +T+HGRTR+QRY+K ADW+YI +C+ L +I
Sbjct: 500 SAVTIHGRTRQQRYSKLADWEYINRCSSLAPDSLQVI----------------------- 536
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
GNGD+ SY D+ E + P ++ MI RGALIKPW
Sbjct: 537 -------------------------GNGDVFSYTDWNEHKNECPKLATCMIARGALIKPW 571
Query: 589 IFQEIKEKKLFDIYA 603
+F EIKE++ +DI +
Sbjct: 572 LFTEIKEQRNWDITS 586
>gi|363750694|ref|XP_003645564.1| hypothetical protein Ecym_3254 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889198|gb|AET38747.1| Hypothetical protein Ecym_3254 [Eremothecium cymbalariae
DBVPG#7215]
Length = 673
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 190/620 (30%), Positives = 283/620 (45%), Gaps = 117/620 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKF------KKNKQVLK 58
GVA +K EF+V D + S+ + + ++ D + KKNK+ +
Sbjct: 38 GVAPVKAEFVVLDVREGGSVAGGGLDIEEEFGPERIQTDASGSGNGDGGSARKKNKK--R 95
Query: 59 GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS-EQ-- 115
GQNK R + ++ + + C YG +C+++HD ++ K E+I EQ
Sbjct: 96 GQNKNRDNRQAKEEHQLCSRLVRGAADDNVCPYGSQCRYIHDVREYLSLKAEEIVCEQFK 155
Query: 116 -CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C VF GYCPMG CRF S+H D + +V++ + N +N +A + + DL
Sbjct: 156 VCPVFESLGYCPMGFKCRFLSTHCDMDALVLVEKPDEERKVLWDANHEINQIAGDKKLDL 215
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
K + F+KSE + + A + E +D K +K G TP D V +V++
Sbjct: 216 VKRRFPFDKSEFVLEIIDAIQQEFRDA---MKEPGAKEQSGEVREITP-VDGVPQVEQRE 271
Query: 235 KSGPVLDTDIIKIKNS---------EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
K K+ N EKK +D K LSPLTTVGNLPFRRL +K GAD+
Sbjct: 272 KKLEAKRHRQKKLYNQYHETRFFAQEKKPLDLHHKRILSPLTTVGNLPFRRLMRKLGADV 331
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFV 344
T SEMA+A L++ + EWAL + H SE D FGVQ+ + P+ K ++L +
Sbjct: 332 TYSEMALAVPLIQGTNSEWALPRAHCSESDGFGVQIAASKPWQAAKAAEVLATHVGSGIS 391
Query: 345 DVNL--GCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
++NL GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 392 EINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------------- 423
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMP 461
+ MN VS+ +P++VK RTG D+ I+
Sbjct: 424 ---------------------------LNAMNYVSNDIPVSVKLRTGTKDDHPIVQGLSK 456
Query: 462 KF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520
+ + + ITLHGR R+QRYT+ ADWDY+ + A R + A
Sbjct: 457 RLVMETDVAAITLHGRNRQQRYTRSADWDYVGEVAN--------------SLRQYEAERT 502
Query: 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580
+RE + Q GNGD ++ED+ + L + +I VM+
Sbjct: 503 EKLKESRESKLRIQ-----------------FVGNGDCNNWEDWYKHL-NNKNIDSVMVA 544
Query: 581 RGALIKPWIFQEIKEKKLFD 600
RGALIKPWIF+EI ++ D
Sbjct: 545 RGALIKPWIFEEIDGQQYLD 564
>gi|328855959|gb|EGG05082.1| hypothetical protein MELLADRAFT_48857 [Melampsora larici-populina
98AG31]
Length = 448
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 196/362 (54%), Gaps = 94/362 (25%)
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
L D+ I+++EK +++W+ KLYL+PLTTVGNLPFRRLC G +ITC EMA+ +L+ +
Sbjct: 68 LPVDLTPIRSNEKTRLNWREKLYLAPLTTVGNLPFRRLCSTLGCEITCGEMALCQDLIGA 127
Query: 300 SPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
+ EW+L+KRH SE +FGVQ+ G+ P +L +++ ++ VDFVDVN GCPI+ ++K+G
Sbjct: 128 NTNEWSLVKRHPSEKIFGVQVAGSRPQLLVPAAEMIGNELKVDFVDVNCGCPIDLVFKKG 187
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
SG+ LL+ G L G +++L+E
Sbjct: 188 SGAALLEHTQRLGKSLIG--------MSKVLKE--------------------------- 212
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
+P+T+K RTGI + N+ H +P+ + WG TLHGR+R+
Sbjct: 213 -------------------IPLTIKLRTGITEGKNLAHKIIPQLQHWGVGATTLHGRSRQ 253
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
QRY+K+ADW+YI +C + TLH RT E+ + D
Sbjct: 254 QRYSKRADWNYISECVK------------------------TLH-RTFEE----EPDLPQ 284
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
I P++GNGD Y +Y E+++ S + G+MI RGAL KPWIF EIKE++ +
Sbjct: 285 I----------PIFGNGDCYDYREYYENMEMS-GVDGIMIARGALTKPWIFTEIKERRDW 333
Query: 600 DI 601
DI
Sbjct: 334 DI 335
>gi|357165712|ref|XP_003580470.1| PREDICTED: tRNA-dihydrouridine synthase 3-like [Brachypodium
distachyon]
Length = 681
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 180/578 (31%), Positives = 251/578 (43%), Gaps = 173/578 (29%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG---- 143
CKYG C+F HD + ++ KP D+ C +Q CP G+ CRF +H D N
Sbjct: 99 ACKYGASCRFSHDIDAYLAQKPADLEGSCPFTVQDKLCPYGLNCRFLGTHKDNNALSENH 158
Query: 144 --NIVKEDVLKE-WKNT------------VGNKTV-NMLANEVRQDLRKHTYNFEKSEKI 187
N + +DV K WK +G K V AN +D + N + S
Sbjct: 159 EINPLNKDVQKLLWKTKYKFPKASAQIKHLGLKEVIKTKANAQTEDQKADHDNLDVS--- 215
Query: 188 CKENKASKNE-------NKDTDD--------------------CCK---NQDSKVIEGRE 217
C+ N K E N D D C + ++ SKV +G
Sbjct: 216 CELNGDDKTESLSGPPVNLDCDSGLCEEMVKLEGEPLVGNSVPCVEPRASKKSKVEDGGI 275
Query: 218 EINTPNTDDVIKVQEETKSGPVLDT----------DIIKIKN-SEKKKIDWQGKLYLSPL 266
N T D E++ L+ D+++ + E+K ID++ KLYL+PL
Sbjct: 276 HKNGAGTHDTTTYSEDSALVNGLEVPSDDPSSCRVDLVETPHLRERKIIDFREKLYLAPL 335
Query: 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY 326
TTVGNLPFRRLCK GADITC EMA+
Sbjct: 336 TTVGNLPFRRLCKTLGADITCGEMAM---------------------------------- 361
Query: 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVL 383
CT L++ Q S LL+R +LFGVQ+CG P +
Sbjct: 362 ----CTNLMQ--------------------GQASEWALLRRHSSEDLFGVQICGAFPDTV 397
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
+ +L++ + DF+D+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TV
Sbjct: 398 ARTVELVDNECSFDFIDINMGCPIDVVVNKGAGSQLLTKPMRIKSIVQASSAVTERPLTV 457
Query: 444 KTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503
K RT + N + + DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ D +
Sbjct: 458 KVRTAFFEGRNRADSLVSDIYDWGASAITIHGRSRQQRYSKLADWDYIYQCAQKAPDDLH 517
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
+I GNGDI SY D
Sbjct: 518 VI------------------------------------------------GNGDIFSYTD 529
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ + IS MI RGALIKPWIF EIKE+K +DI
Sbjct: 530 WNRHVSGCSKISTCMIARGALIKPWIFTEIKEQKDWDI 567
>gi|297801970|ref|XP_002868869.1| dihydrouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297314705|gb|EFH45128.1| dihydrouridine synthase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 691
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 170/597 (28%), Positives = 253/597 (42%), Gaps = 187/597 (31%)
Query: 77 CPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSS 136
CP + + +C+Y +KC+F HD F KP+DI QC C G++CRF +
Sbjct: 100 CPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKPDDIEGQCPFVASEMKCAYGLSCRFLGT 159
Query: 137 HLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF--------------- 181
H D G + KE +N E ++ L K+ F
Sbjct: 160 HRDIAGNSDEKE-----------KSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGH 208
Query: 182 EKSEKICKENKASKNENKDT---------DDCCKNQDSKVIEGREEINTP---------- 222
K +EN A K +N T D ++ + + +I P
Sbjct: 209 AKKSNAAEENSAEKTQNGVTGTQATEVAVDSAVSSEPTSEMIQDADIPGPLKTEEVRPMK 268
Query: 223 ----------------NTDDVIKVQEE-------TKSGPVLDTDIIKIKNSE-------- 251
+D +KV+E+ T V D D IKI ++
Sbjct: 269 KAKSEDQENSKPGDVGGVNDGVKVEEDAKKNGFSTSKADVEDEDSIKIVETDSSLKLHPR 328
Query: 252 --KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
KK ID++ KLYL+PLTTVGNLPFRRLCK GAD+TC EMA+
Sbjct: 329 EKKKLIDFRDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAM----------------- 371
Query: 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR-- 367
CT LL+ Q S LL+R
Sbjct: 372 ---------------------CTNLLQ--------------------GQASEWALLRRHS 390
Query: 368 -ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+LFGVQ+CG+ P +++ +L++ + VDF+D+N+GCPI+ + + +GS LL + +
Sbjct: 391 SEDLFGVQICGSYPDTVSRTVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRM 450
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
++++ + + PIT+K RT + N I + + +WGA+ +T+HGR+R+QRY+K A
Sbjct: 451 KNIVEVSSSILETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSA 510
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DWDYI +C + S + +I
Sbjct: 511 DWDYIYQCTKNASTNLQVI----------------------------------------- 529
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD+ SY D+ + P +S MI RGALIKPWIF EIKE++ +DI +
Sbjct: 530 -------GNGDVYSYLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDITS 579
>gi|330797093|ref|XP_003286597.1| hypothetical protein DICPUDRAFT_31125 [Dictyostelium purpureum]
gi|325083422|gb|EGC36875.1| hypothetical protein DICPUDRAFT_31125 [Dictyostelium purpureum]
Length = 561
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 165/558 (29%), Positives = 262/558 (46%), Gaps = 155/558 (27%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHL--DENGGN 144
+ C+YG+KCKF H+ ++K+KP+ + +C + +G C GI C FG H+ +E+ N
Sbjct: 9 EKCEYGDKCKFSHNVEEYLKTKPKSLG-KCLSYEAYGKCKFGINCYFGEDHIVGNESISN 67
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTD-- 202
K +V K V +N ++ E++ L+ + Y F KS++ KEN + + K
Sbjct: 68 PEKFNV----KPVV---PINDISIELQNKLKSNVYPFTKSDQYFKENNITPKQLKPRGKL 120
Query: 203 ----------------DCCKNQDS-------------KVIEGREEINTPNTDDVIKVQEE 233
DCC+ ++ + + + +D++ + E
Sbjct: 121 AKQQNNNNKKEKEEDGDCCREEEKEEKEKEKEQEESISLKDSERPVKKVKSDELASSESE 180
Query: 234 TKSGPVL-----DTDIIKI---KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
S T+I K+ K +EKK+ +++ +L L+PLTTVGNLPFRR+ KK GADI
Sbjct: 181 PASTSTTTQSHEHTEIDKLTPLKENEKKQFNFRDQLILAPLTTVGNLPFRRIAKKLGADI 240
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVD 345
T EMA+ T++L+ S E AL+K+H ED FG+Q+CG+ +C + +E ++ DFVD
Sbjct: 241 TIGEMALTTKILEGSRSELALLKKHPCEDKFGIQICGSYVDTAIRCAEFIENEVECDFVD 300
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N GCPI+ + G+G+ L+++ K QLL+
Sbjct: 301 INSGCPIDMVCNMGAGAALMEKPK---------------KVEQLLKG------------- 332
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
+ S ++C P T+K R G +D H +P D
Sbjct: 333 --------------------ISSTLSC-------PTTIKIRIGKLEDAPTAHKIIPFLGD 365
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
+GAS +TLHGR+R QRY++ A+W+Y+++C+++
Sbjct: 366 YGASAVTLHGRSRNQRYSRLANWEYVKQCSEV---------------------------- 397
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
S PL GNGDI +Y D ++ + +S VM+ RGALI
Sbjct: 398 ----------------------SKIPLIGNGDIYNYRDVV-NIYDTSKVSSVMVARGALI 434
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPWIF EIKEK+ +DI A
Sbjct: 435 KPWIFTEIKEKRDWDISA 452
>gi|388854796|emb|CCF51689.1| related to DUS3-member of dihydrouridine synthase family [Ustilago
hordei]
Length = 851
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/594 (28%), Positives = 254/594 (42%), Gaps = 161/594 (27%)
Query: 79 FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSH- 137
F++ +T T EK + V V + D++ C +F G+C MG CRF SH
Sbjct: 230 FVRPNTSPST----EKAEEVAKAQVDPAHQSLDLTTSCPIFAVKGFCTMGWKCRFLGSHV 285
Query: 138 --------LDENGGN---------IVKEDVLKEWKN-----TVGNK---------TVNML 166
+D++GG+ + E LK W+ T+ NK +N
Sbjct: 286 RIVGASSLIDKDGGSGFAASGLELVRDEQRLKAWRERPRAFTLANKHAEHDADQEELNFG 345
Query: 167 ANEVRQDLRKHTYNFEKSEKICK--ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT 224
+ +R Y K++ + + E ++ + D + IE EE +
Sbjct: 346 TGAGMKSMRVRKYPLPKTKAVLRYLEQESKQLAKVDPQGSTAGKAPVPIEIVEEAVAAHN 405
Query: 225 D----------------------------------DVIKVQEETKSGPVLDTDIIKIKNS 250
+ + + + DI +I+ S
Sbjct: 406 NRPFPAAPPAAGDVGGGMGEGDIEELENAICNSTCSAVATRVAEAANASTGIDIARIRPS 465
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
EK++++W+G+LYL+PLTT GNLPFRR+C +G+DI C EM +A L + EW+L++RH
Sbjct: 466 EKRRLNWKGELYLAPLTTTGNLPFRRICASFGSDIHCGEMGLAESFLHGNASEWSLVRRH 525
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
SE +FG QLCG P +L + L+ ++ +DFVD+N GCPI+ +Y +G+GS LL
Sbjct: 526 ASERIFGTQLCGGKPDLLVPVAEALKAEIGDGLDFVDINCGCPIDLVYNKGAGSALL--- 582
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
++P L+K
Sbjct: 583 ---------DHPSKLSK------------------------------------------- 590
Query: 429 VITCMNEV-SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
++ MN V P+T+K RTG F +WGAS TLHGR+R+QRY AD
Sbjct: 591 IVRGMNAVLGDTPLTIKLRTGTGAKQTTHKIFAKVQTEWGASAATLHGRSRKQRYKNDAD 650
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W YI CA+ + W E RY + +
Sbjct: 651 WGYIATCAR----------TLRSSVQQW----------NEESRYADEPE----------M 680
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P P+YGNGD+ S++DY E L ++ ++ G MI RGALIKPW+ EIKE++ +DI
Sbjct: 681 VPIPIYGNGDVYSWQDYYERLSRT-AVDGEMIARGALIKPWLLTEIKERRDWDI 733
>gi|134114502|ref|XP_774081.1| hypothetical protein CNBH0060 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818018|sp|P0CN29.1|DUS3_CRYNB RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|50256713|gb|EAL19434.1| hypothetical protein CNBH0060 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 725
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 190/688 (27%), Positives = 285/688 (41%), Gaps = 183/688 (26%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECV------------NETDKRKLEELEVEDDGTAKKKFK 51
SG A IK E+++ V S TD R + D +K K
Sbjct: 22 SGQAPIKAEYLINTTPIVESASASELNNIHPDDAAEGRTDSRDSRDGRDRPDNKRRKPNK 81
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
++K+ KGQNK R + + C + + + G+ C++ H + + KP D
Sbjct: 82 QDKKDKKGQNKGRHFPVIREASVRICRAWETTGICDRADKGD-CRYAHSWEGYFEVKPND 140
Query: 112 ISEQ----------------------------------CYVFLQHGYCPMGIACRFGSSH 137
IS + C V GYCP G CRF +H
Sbjct: 141 ISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCPVLKDLGYCPFGWRCRFLGAH 200
Query: 138 LDENGGNI--------VKEDVLKEWK----------NTVGNKTVNMLANEVRQDLRKHTY 179
+ + E + EW+ N K N +EV LR+ T
Sbjct: 201 VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENGWKQKETNWPEHEVLNALRRSTA 260
Query: 180 NFEKSEKICK----------ENKAS--------KNENKDTDDCCKNQDSKVIEGREEINT 221
+F SE K +NK KN D ++ G +E N
Sbjct: 261 SFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENA 320
Query: 222 PNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + +E+ K + + ++ EK++++W+G YL+PLTTVGNLPFRRLC +
Sbjct: 321 MNATENERNEEKGKVYGETEAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDY 380
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM-- 339
GA IT SEMA+A L+ + +EWAL++RHESE +FGVQ+ G P + +++ +
Sbjct: 381 GATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGK 440
Query: 340 --AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
VDFVDVN+GCPI+ ++ QG+GS L+ G L G N + + D
Sbjct: 441 GGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN-------------RALGD 487
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
P+ ++ G G K N H
Sbjct: 488 I-------PLTVKFRTGVAHG--------------------------------KPN--AH 506
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+P+F +WGA +T+HGR+R+QRY+K ADW+YI+ C + + ++ +P
Sbjct: 507 KLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTC--VTALRESVADANLP------ 558
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P P++GNGD S Y E + +S + G
Sbjct: 559 --------------------------------PVPIFGNGDCFSAASYYEEMDRS-GVDG 585
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDIYAI 604
VM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 586 VMVARGALIKPWIFTEIKERREWDISAV 613
>gi|58271188|ref|XP_572750.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var.
neoformans JEC21]
gi|338818019|sp|P0CN28.1|DUS3_CRYNJ RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|57229009|gb|AAW45443.1| tRNA dihydrouridine synthase, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 725
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 190/688 (27%), Positives = 285/688 (41%), Gaps = 183/688 (26%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECV------------NETDKRKLEELEVEDDGTAKKKFK 51
SG A IK E+++ V S TD R + D +K K
Sbjct: 22 SGQAPIKAEYLINTTPIVESASASELNNIHPDDAAEGRTDSRDSRDGRDRPDNKRRKPNK 81
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
++K+ KGQNK R + + C + + + G+ C++ H + + KP D
Sbjct: 82 QDKKDKKGQNKGRHFPVIREASVRICRAWETTGICDRADKGD-CRYAHSWEGYFEVKPND 140
Query: 112 ISEQ----------------------------------CYVFLQHGYCPMGIACRFGSSH 137
IS + C V GYCP G CRF +H
Sbjct: 141 ISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCPVLKDLGYCPFGWRCRFLGAH 200
Query: 138 LDENGGNI--------VKEDVLKEWK----------NTVGNKTVNMLANEVRQDLRKHTY 179
+ + E + EW+ N K N +EV LR+ T
Sbjct: 201 VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENGWKQKETNWPEHEVLNALRRSTA 260
Query: 180 NFEKSEKICK----------ENKAS--------KNENKDTDDCCKNQDSKVIEGREEINT 221
+F SE K +NK KN D ++ G +E N
Sbjct: 261 SFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENA 320
Query: 222 PNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + +E+ K + + ++ EK++++W+G YL+PLTTVGNLPFRRLC +
Sbjct: 321 MNATENERNEEKGKVYGEPEAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDY 380
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM-- 339
GA IT SEMA+A L+ + +EWAL++RHESE +FGVQ+ G P + +++ +
Sbjct: 381 GATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGK 440
Query: 340 --AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
VDFVDVN+GCPI+ ++ QG+GS L+ G L G N + + D
Sbjct: 441 GGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN-------------RALGD 487
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
P+ ++ G G K N H
Sbjct: 488 I-------PLTVKFRTGVAHG--------------------------------KPN--AH 506
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+P+F +WGA +T+HGR+R+QRY+K ADW+YI+ C + + ++ +P
Sbjct: 507 KLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTC--VTALRESVADANLP------ 558
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P P++GNGD S Y E + +S + G
Sbjct: 559 --------------------------------PVPIFGNGDCFSAASYYEEMDRS-GVDG 585
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDIYAI 604
VM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 586 VMVARGALIKPWIFTEIKERREWDISAV 613
>gi|300175488|emb|CBK20799.2| unnamed protein product [Blastocystis hominis]
Length = 562
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 167/526 (31%), Positives = 234/526 (44%), Gaps = 154/526 (29%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVK- 147
C Y + CKF HD F ++ DIS C V+ +HGYCPMG+ CR+ SH + + K
Sbjct: 73 CPYKDSCKFDHDVQAFFANRQPDISPMCPVWERHGYCPMGLNCRWAGSHTSSDLKPVAKP 132
Query: 148 ---EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEK-ICKENKASKNENKDTDD 203
+ + E+ N +GN + Q LRK TY F S+ + N S + T+
Sbjct: 133 TEEQTPIIEY-NEIGN---------LLQTLRKKTYLFTTSDSPVSSTNPPSTEPAEPTEP 182
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
+ K + + +E + +D++GK+Y+
Sbjct: 183 MDPAESPKPVGA-------------------------------LGEAEVRPVDFRGKIYI 211
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTTVGNLPFRRLC ++GADITCSEMA+ T LLK EWAL++RH E +FGVQ+
Sbjct: 212 APLTTVGNLPFRRLCVEFGADITCSEMAITTNLLKGQVSEWALLRRHPCERVFGVQIATG 271
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
P K +LL + DF+D+N GCPI+ + K G+G+ L+ +P L
Sbjct: 272 RPDEARKTAELLRREFRCDFLDLNCGCPIDVLDKMGAGAALM------------GHPSKL 319
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
+ IL V ++ +LP+
Sbjct: 320 RR---------------------------------------ILTGV---LDGAETLPVVC 337
Query: 444 KTRTGIHKDNNIIHNFMPKF------RDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
K RTG + N + F+ R S +T+HGRT+ RYTK ADW+Y+EKCA L
Sbjct: 338 KLRTGDRE--NSLEKFVGSLAALQGRRGNRVSALTIHGRTKVGRYTKLADWEYVEKCAAL 395
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
Q S + GNGD
Sbjct: 396 AK---------------------------------------------QSASDVQVIGNGD 410
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ +E Y E L +S +SGVMIGRGALIKPWI EIKE++ +DI A
Sbjct: 411 VFDHEMYYEHL-QSGVLSGVMIGRGALIKPWICTEIKERRHWDISA 455
>gi|19115484|ref|NP_594572.1| tRNA dihydrouridine synthase Dus3 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74638894|sp|Q9UTH9.1|DUS3_SCHPO RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|6013094|emb|CAB57402.1| tRNA dihydrouridine synthase Dus3 (predicted) [Schizosaccharomyces
pombe]
Length = 617
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 180/593 (30%), Positives = 272/593 (45%), Gaps = 130/593 (21%)
Query: 36 EELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKC 95
EE V+ DG K+K K+ +GQNK R V K + CP + ++ C Y E C
Sbjct: 13 EEFLVKQDGNKKRKRKE-----RGQNKRREKIHV-KENNALCPAI---SIGNECPYKENC 63
Query: 96 KFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWK 155
KF HD ++ +K DI ++C +F ++G CP G CR+ + H+ N K +++K+
Sbjct: 64 KFPHDVEAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGHVVINADG--KYELIKKPD 121
Query: 156 NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKIC-------KENKASKNENKDTDDCCKNQ 208
TVN + EV++ LR + K+E I K + +SK N ++ ++
Sbjct: 122 GQFTLFTVNTVGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKVSNIPEEN--RDA 179
Query: 209 DSKVIEGRE-EINTPNTDDVIKVQ--------EETKSGPVLDTDIIKIKNSEKKKIDWQG 259
S + EG+E E + V+K Q +E S + + ++ EK IDW+
Sbjct: 180 TSAISEGKETESVSLEETGVLKNQTVSVNVDLKEISSQARSNIALPTLRPQEKNLIDWRD 239
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK---------RH 310
+ L+PLTTVGN PFRRLC GAD SEMA+ L++ EWAL++ R
Sbjct: 240 RKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRG 299
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
+ GVQL + TK Q++ EQ VDF+D+N GCPI+ +++QG+GS LL+
Sbjct: 300 GRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLE--- 356
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
NP L + Q
Sbjct: 357 ---------NPGRLLRNLQ----------------------------------------- 366
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQAD 487
M+ VS +P+TVK R G D+ ++ N + + F + S TLHGR+R+QRY+K A+
Sbjct: 367 --GMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNAN 424
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
WDYI + A N I D + + +
Sbjct: 425 WDYIGEIASKVKSMNERI--------------------------------DELPEDSLRT 452
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
P L GNGD S++D+ + + K + VMI RGAL+KPWIF+EI+ ++ D
Sbjct: 453 QPLSLIGNGDCYSWQDWYDGVNK--GVDTVMIARGALVKPWIFEEIEARQFID 503
>gi|255543897|ref|XP_002513011.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
gi|223548022|gb|EEF49514.1| tRNA-dihydrouridine synthase, putative [Ricinus communis]
Length = 686
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 182/622 (29%), Positives = 265/622 (42%), Gaps = 189/622 (30%)
Query: 49 KFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK 108
K KK+K+ LK + + + + CP L + +C+YG+KC+F HD F K
Sbjct: 71 KEKKSKRQLKRERREEKKSALN-----LCPELAKTEDVNSCRYGDKCRFSHDLEAFKAQK 125
Query: 109 PEDISEQC-YVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
P+DI +C ++ + CP G+ACRF S+H ENG VK D K + VN L
Sbjct: 126 PDDIEGKCPFINGEGKACPYGLACRFYSTH--ENG---VKGDASNTRKQS---SEVNGLN 177
Query: 168 NEVRQDLRKHTYNFEKSEKICKE-------NKASKNENKDTDDCCKNQDSKV-------- 212
+V++ L K+ + F K++ I K N K +N D D DS
Sbjct: 178 KDVQKLLWKNRFKFPKADAILKSLGLMGPSNSRVKRQNDDEVDNASVNDSHAASENGCGK 237
Query: 213 --------IEGREEINTPNTDDVIKVQ------------------EETKSGPVLDTDI-- 244
+E E+ T + D + + EE V + D
Sbjct: 238 LATDAADKLECPSEVLTEDNADAVTDEIRPLKKAKSDVDEKCCSGEEANGASVPEKDSED 297
Query: 245 ---------------------IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+K EKK ID++GKLYL+PLTTVGNLPFRRLCK
Sbjct: 298 SFKETESDAVNNGALTEPDGSLKTHPREKKLIDFKGKLYLAPLTTVGNLPFRRLCK---- 353
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL-CGNNPYVLTKCTQLLEEQMAVD 342
L G + CG + CT LL+
Sbjct: 354 -------------------------------LLGADITCGE----MAMCTNLLQ------ 372
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
Q S LL+R +LFGVQ+CG + + +L++++ VDF+
Sbjct: 373 --------------GQASEWALLRRHSSEDLFGVQICGAYSDTVARTVELIDQECTVDFI 418
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
D+N+GCPI+ + +G+GS LL + ++S+I + PITVK RTG + N I +
Sbjct: 419 DINMGCPIDIVVSKGAGSCLLTKPMRMKSIIHAASSTVDTPITVKVRTGYFEGKNRIDSL 478
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+ +WG + +T+HGR+R+QRY+K ADW+YI CA+ ++
Sbjct: 479 IADISNWGTNAVTIHGRSRQQRYSKLADWEYIYHCAKKAPESFQVL-------------- 524
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
GNGDI SY D+ + P +S MI
Sbjct: 525 ----------------------------------GNGDIFSYTDWNKHKSDCPELSSCMI 550
Query: 580 GRGALIKPWIFQEIKEKKLFDI 601
RGALIKPW+F EIKE++ +DI
Sbjct: 551 ARGALIKPWLFTEIKEQRHWDI 572
>gi|365991082|ref|XP_003672370.1| hypothetical protein NDAI_0J02350 [Naumovozyma dairenensis CBS 421]
gi|343771145|emb|CCD27127.1| hypothetical protein NDAI_0J02350 [Naumovozyma dairenensis CBS 421]
Length = 664
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 185/619 (29%), Positives = 285/619 (46%), Gaps = 116/619 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A +K EFI+ S N D E E KKNK+ +GQNK R
Sbjct: 28 GIAHLKPEFIIHTSSTTTSTTPANHDDD------EAEPSTERLPTSKKNKK--RGQNKNR 79
Query: 65 GPTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---DISEQCYVF 119
TK + C ++ C +G+KC+FVHD ++++ +K PE D + C V+
Sbjct: 80 D-NRQTKEVNALCSKIIQGQDPNVACTFGDKCRFVHDVDLYLTTKKPEIESDYFKVCPVW 138
Query: 120 LQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
GYCPMG CRF SSH D+ ++ + + G + VN+++ + + DL K +
Sbjct: 139 DALGYCPMGFKCRFLSSHYDKVNKKLLSVPPPSKEEGNNGKQEVNVISYDAKFDLIKRRF 198
Query: 180 NFEKSEKICKENKASKNENKD------TDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
FEKS+ + A + EN+D T ++D + E E N V++ ++E
Sbjct: 199 KFEKSDHVLNIIDAIQQENRDVMKPEKTQPIHDDKDEQEEETNGEKNERVAPQVLQREKE 258
Query: 234 TKSGPVLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITC 287
+ ++ +K K++ EKK +D K +SPLTTVGNLP+RRL +K GAD+T
Sbjct: 259 LEEHRNKQKELYLKYKDTRYFAQEKKPLDLHRKKIVSPLTTVGNLPYRRLMRKLGADVTY 318
Query: 288 SEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQM---AVDF 343
SEMA++ L++ + EWAL K H SE +G+Q+ + + K T+ L + +
Sbjct: 319 SEMALSVPLIQGTNSEWALPKAHVSEVPGYGIQIACSKAWQAAKATEALASNLDHSGISE 378
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
+++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 379 INLNSGCPIDLLYRQGSGSALL------------DNPARMIRC----------------- 409
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK 462
+ MN VS +PI+VK RTG + + I M +
Sbjct: 410 --------------------------LNAMNYVSGDIPISVKIRTGTKEGHPIAEGLMKR 443
Query: 463 F-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521
+ + +TLHGR+R+QRYTK A+WDYI A N T
Sbjct: 444 LVYETDVAAVTLHGRSRQQRYTKLANWDYISNVADSLRASEFEFEN------------ST 491
Query: 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
+ RE + Q GNGD+ ++ED+ L + +I +M+ R
Sbjct: 492 EYKERRESKLRVQ-----------------FVGNGDVNNFEDWYRYLDNNKNIDSIMVAR 534
Query: 582 GALIKPWIFQEIKEKKLFD 600
G LIKPWIF+E+ ++ D
Sbjct: 535 GCLIKPWIFEEVDAEQYID 553
>gi|303278554|ref|XP_003058570.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459730|gb|EEH57025.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 430
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 188/362 (51%), Gaps = 110/362 (30%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
++ EK+ +D+ KLYL+PLTTVGNLPFRR+CK GADITC EMA+ T LL+ P EWA
Sbjct: 50 RMNAREKQTVDFSDKLYLAPLTTVGNLPFRRVCKGLGADITCGEMAMCTNLLQGQPNEWA 109
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE----QMAVDFVDVNLGCPIEFIYKQGSG 361
L++RH SEDLFGVQ+CG + +C+QL+++ Q DFVD+N+GCPI+ + +G G
Sbjct: 110 LLRRHPSEDLFGVQICGGYSDSVARCSQLIDDVIVSQGGCDFVDINMGCPIDLVCNKGGG 169
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S LL+R N + Q
Sbjct: 170 SMLLERHNR------------------------------------------------MEQ 181
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
A S+++C P+T+KTRTG + + + H+ +PK +DWG + +TLHGR+R+QR
Sbjct: 182 IARSASSLLSC-------PLTLKTRTGYYDNKRVAHDIVPKLKDWGVAAVTLHGRSRQQR 234
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y++ ADW+YI+ A + S
Sbjct: 235 YSRLADWEYIKNTANVSS------------------------------------------ 252
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
PL GNGD+ ++ DY ++++ + ++ MI RGALIKPWIF EIKE++ +DI
Sbjct: 253 --------VPLIGNGDVFNFRDYEKNVEGTGVMT-CMIARGALIKPWIFTEIKERRDWDI 303
Query: 602 YA 603
A
Sbjct: 304 SA 305
>gi|440794820|gb|ELR15969.1| TIMbarrel protein, putative [Acanthamoeba castellanii str. Neff]
Length = 651
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 160/534 (29%), Positives = 249/534 (46%), Gaps = 139/534 (26%)
Query: 87 QTCKYGE-KCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI 145
+TC +G+ KCKF HD F+ +KP DI+++C +F + G C G+ CRFGSSH+ +N N+
Sbjct: 128 RTCPHGDIKCKFSHDVAAFLAAKPADIADRCPMFEETGRCKYGLVCRFGSSHIKDNK-NV 186
Query: 146 VKEDVLKE--WKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE-NKASKNENKDTD 202
+ E+ + ++VN L +V+ LRK Y+F ++ ++ + +K +D +
Sbjct: 187 INEEARTSPILASKPHPESVNFLDKDVQVKLRKRQYDFSRAVPYLRQWTRETKQRVQDNN 246
Query: 203 -------------DCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKN 249
D++ + P + K +E+ K+ + + K++
Sbjct: 247 VPVSERAAGEGQTSASDGADAQAAATMDVEAAPQAEPADKGKEKEKA---TEAEAEKMEE 303
Query: 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
+ KI+ + + +PL RR+CK GADITC EMA+A LL+ P EWAL++R
Sbjct: 304 ERRVKIEQRLEFVETPLRRWKR---RRICKTLGADITCGEMALAENLLQGQPSEWALLRR 360
Query: 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
H SED+FGVQLCG +P LTKC Q+L+E ++VDFVD+N GCPI+ + +G+GS LL R
Sbjct: 361 HPSEDIFGVQLCGPHPDHLTKCGQVLDETISVDFVDINCGCPIDLVVNKGAGSALLDRPR 420
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
+E I + + +V
Sbjct: 421 R------------------------------------LEGIVRG------------MATV 432
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
++C P+TVK RTG + H +P + GA+ +T RY+++ADW
Sbjct: 433 LSC-------PLTVKIRTGKDEKAPNAHKLIPLLAECGAAAVT--------RYSREADWS 477
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
YI +CA+ SP
Sbjct: 478 YIRQCAE--------------------------------------------------TSP 487
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
P+ GNGDI + E+ K+ +S +M+ RGALIKPW+F EIKE + +DI A
Sbjct: 488 IPIIGNGDIYGPQQAAEA--KAAGVSTIMVARGALIKPWVFTEIKENRDWDISA 539
>gi|116308867|emb|CAH66003.1| H0613H07.1 [Oryza sativa Indica Group]
Length = 685
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 182/623 (29%), Positives = 265/623 (42%), Gaps = 177/623 (28%)
Query: 42 DDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDK 101
+DG A KK+K+ LK + K K C + S +CKYG+ C+F HD
Sbjct: 63 NDGGAVVAEKKSKRQLKRERKQE-----QKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDI 117
Query: 102 NVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG----------NIVKEDVL 151
+ ++ KP D+ C CP G+ CRF +H D + N + +D+
Sbjct: 118 DAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQ 177
Query: 152 KE-WKN------------TVGNKTV-----------------NMLAN--EVRQDLRKHTY 179
K WKN +G K V N+ N E ++ L
Sbjct: 178 KLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPV 237
Query: 180 NFEKSEKICKENKASKNE-----------------NKDTDDCCKNQDSKVIEGREEINTP 222
N E +C+E S+ E +K D + + E P
Sbjct: 238 NAECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP 297
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + E + + TD+I + EKK ID++ KLYL+PLTTVGNLPFRRLCK
Sbjct: 298 NLSNGL---EPSNNASSCRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTL 354
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAV 341
GADITC EMA+ CT LL+
Sbjct: 355 GADITCGEMAM--------------------------------------CTNLLQ----- 371
Query: 342 DFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
Q S LL+R +LFGVQ+CG P + + +L++ + VDF
Sbjct: 372 ---------------GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDF 416
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+D+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TVK RT + N +
Sbjct: 417 IDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADS 476
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
+ DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ +++ N
Sbjct: 477 IVSDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN----------- 525
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
GD+ S+ D+ + + IS M
Sbjct: 526 -------------------------------------GDVFSFTDWNKHVSGCSKISTCM 548
Query: 579 IGRGALIKPWIFQEIKEKKLFDI 601
I RGALIKPWIF E+KE++ +DI
Sbjct: 549 IARGALIKPWIFTEVKEQRHWDI 571
>gi|366997426|ref|XP_003678475.1| hypothetical protein NCAS_0J01580 [Naumovozyma castellii CBS 4309]
gi|342304347|emb|CCC72137.1| hypothetical protein NCAS_0J01580 [Naumovozyma castellii CBS 4309]
Length = 652
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 187/625 (29%), Positives = 303/625 (48%), Gaps = 125/625 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-----GTAKKKFKKNKQVL 57
+GVA+IK ++IV S+ L+E D G K KNK+
Sbjct: 21 TAGVAQIKPQYIV-------SLTSNEPPASASLDEEPTNDRIQDSMGPQGGKRGKNKK-R 72
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDI----- 112
+GQNK R V K ++ CP L + C +G+KC+F HD +++ K ++
Sbjct: 73 RGQNKNRDNRQV-KEQNPLCPRLVFGGAREDCSFGDKCRFEHDLQNYLQGKATEVQCDAW 131
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI-VKEDVLKEWKNTVGNKTVNMLANEVR 171
++ C VF G+CPMG CRF S HL + + V ++ K+W +G VN++ + +
Sbjct: 132 NKTCPVFDAVGFCPMGFKCRFLSGHLKDAESLVGVPDEKQKQWH--MGE--VNVIGGDQK 187
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
DL K + F KS+++ + + + E++D K + E ++++ V++ +
Sbjct: 188 LDLIKRRFQFAKSDEVLEIIDSIQQEHRDE---MKPEQQIAAEAKDDVEI--APQVVQRE 242
Query: 232 EETKSGPVLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
+E K ++ +K K++ EKK ++ K +SPLTTVGNLP+RRL +K GAD+
Sbjct: 243 KELKEHRERQKELYLKYKDTRYFAQEKKPLNLNRKKIVSPLTTVGNLPYRRLMRKLGADV 302
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQM---AV 341
T SEMA+A L++ + EWAL K H +E +GVQ+ + P+ K T+ L + +
Sbjct: 303 TYSEMALAVPLIQGTNSEWALPKAHSTEVPGYGVQIACSKPWQAAKATEALAANLDNSNI 362
Query: 342 DFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV 401
+++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 363 SEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC--------------- 395
Query: 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFM 460
+ MN VS+ +PITVK RTG + I M
Sbjct: 396 ----------------------------LNAMNYVSNDIPITVKIRTGTKDGHPIAEGLM 427
Query: 461 PKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+ + S +TLHGR+R+QRYTK ADWDYI K A R++ + ++ +F+D
Sbjct: 428 KRLVYETDISAVTLHGRSRQQRYTKSADWDYISKVANTL-RESELEYSNSEQFKD----- 481
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
TRE + Q GNGD+ ++ED+ L+ + +I +M+
Sbjct: 482 ------TRESSHRIQ-----------------FVGNGDVNNWEDWYRHLEGNSNIDSIMV 518
Query: 580 GRGALIKPWIFQEIKEKKLFDIYAI 604
RG LIKPW+F+E++ ++ D ++
Sbjct: 519 ARGCLIKPWMFEEVEAQQYLDKSSV 543
>gi|125547021|gb|EAY92843.1| hypothetical protein OsI_14644 [Oryza sativa Indica Group]
Length = 685
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 182/625 (29%), Positives = 266/625 (42%), Gaps = 177/625 (28%)
Query: 42 DDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDK 101
+DG A KK+K+ LK + K K C + S +CKYG+ C+F HD
Sbjct: 63 NDGGAVVAEKKSKRQLKRERKQE-----QKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDI 117
Query: 102 NVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG----------NIVKEDVL 151
+ ++ KP D+ C CP G+ CRF +H D + N + +D+
Sbjct: 118 DAYLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQ 177
Query: 152 KE-WKN------------TVGNKTV-----------------NMLAN--EVRQDLRKHTY 179
K WKN +G K V N+ N E ++ L
Sbjct: 178 KLLWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPV 237
Query: 180 NFEKSEKICKENKASKNE-----------------NKDTDDCCKNQDSKVIEGREEINTP 222
N E +C+E S+ E +K D + + E P
Sbjct: 238 NAECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDP 297
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + E + + TD+I + EKK ID++ KLYL+PLTTVGNLPFRRLCK
Sbjct: 298 NLSNGL---EPSNNASSCRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTL 354
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAV 341
GADITC EMA+ CT LL+
Sbjct: 355 GADITCGEMAM--------------------------------------CTNLLQ----- 371
Query: 342 DFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
Q S LL+R +LFGVQ+CG P + + +L++ + VDF
Sbjct: 372 ---------------GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDF 416
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+D+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TVK RT + N +
Sbjct: 417 IDINMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADS 476
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
+ DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ +++ N
Sbjct: 477 IVSDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN----------- 525
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
GD+ S+ D+ + + IS M
Sbjct: 526 -------------------------------------GDVFSFTDWNKHVSGCSKISTCM 548
Query: 579 IGRGALIKPWIFQEIKEKKLFDIYA 603
I RGALIKPWIF E+KE++ +DI +
Sbjct: 549 IARGALIKPWIFTEVKEQRHWDITS 573
>gi|444511966|gb|ELV10016.1| tRNA-dihydrouridine synthase 3-like protein [Tupaia chinensis]
Length = 618
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 164/555 (29%), Positives = 247/555 (44%), Gaps = 165/555 (29%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P K + CP L + C +GE+C+F+H ++++KP D+
Sbjct: 158 RGQNKSRPHVKPMHYDK--NRLCPSLVQDPATK-CPFGERCRFLHSVCQYLEAKPADLGP 214
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C +F G CP G+ CRF +HL G N+ KE N L ++Q L
Sbjct: 215 HCVLFDTFGRCPYGVTCRFARAHLGPEGQNLEKELAAPP------PPVRNSLDKTLQQQL 268
Query: 175 RKHTYNFEKSEKICKE-NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
RK FE++E++ ++ +A D QDS E ++ P++D +
Sbjct: 269 RKRQVRFERAEQVLRQLRRAKPGPEVAAADGASGQDS--CEAQQAPPGPDSDTPPSSSLQ 326
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
T GP+ D DI++++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 327 T-CGPLTDEDIVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 385
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH+ ED+FGV
Sbjct: 386 TNLLQGQLSEWALLKRHDCEDVFGV----------------------------------- 410
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
QG G L+ R++ F Q +V ++ L P+ +
Sbjct: 411 ----QGGGCALMNRSSKF---------------------QQIVRGMNQVLDVPLTVKIR- 444
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
+G+ +R N+ ++ + + + +T+ R+
Sbjct: 445 ---TGVQERVNLAHRLLPQLRDWGAALVTLHGRS-------------------------- 475
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
REQRYTK ADW YIE+C GA+
Sbjct: 476 ----REQRYTKLADWQYIEQCV--------------------GAA--------------- 496
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR----GALIKPWI 589
SP PL+GNGDILSYED + + ++G+M+ R GAL+KPW+
Sbjct: 497 --------------SPMPLFGNGDILSYEDANRATQT--GVAGIMVARPGHSGALLKPWL 540
Query: 590 FQEIKEKKLFDIYAI 604
F EIKE++ +DI ++
Sbjct: 541 FTEIKEQRHWDISSL 555
>gi|410950229|ref|XP_003981813.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Felis
catus]
Length = 609
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 149/485 (30%), Positives = 239/485 (49%), Gaps = 85/485 (17%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
++A G K QE D +E E + +LE+ + + ++ + K+ +GQ
Sbjct: 62 LEARGQEKPSQETEAGDPGGSDLVE--PEAKRIRLEDGQTGEAAEPGEQPQVQKRA-RGQ 118
Query: 61 NKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCY 117
NK R PT + CP L + + C +G++C+F+HD ++++KP D+ +C
Sbjct: 119 NKGRPHMKPTHYDN--NRLCPSLVQESAAK-CFFGDRCRFLHDVGRYLETKPSDLGPRCV 175
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
+F G CP G+ CRF +HL +G N+V++ EW N L ++Q LRK
Sbjct: 176 LFETFGRCPYGVTCRFAGAHLGPDGQNLVRD----EWVQA--PPVRNGLDKALQQLLRKR 229
Query: 178 TYNFEKSEKICKE---------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVI 228
FE++E+ ++ + A+ + QDS + ++ + P+ +
Sbjct: 230 KVRFERAEQALRQLSRDRVPGPSPAAAVPEVAGAESAPGQDSG--DTQQALPGPDAGALP 287
Query: 229 KVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
T+ GP+ D D+++ + EK+K+ G L +P GNLPFRR+CK++GAD+TC
Sbjct: 288 SGSVWTR-GPLTDEDVVRPRPCEKRKVRVSGFLLGAP---CGNLPFRRICKRFGADVTCG 343
Query: 289 EMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL 348
EMAV T LL+ EWAL++RH+ ED+FGVQL G P +TKC +LL + VDFVD+N+
Sbjct: 344 EMAVCTNLLQGQTSEWALLRRHQCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 403
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
GCPI+ +YK+G G L+ R+ F Q +V ++ L P
Sbjct: 404 GCPIDLVYKKGGGCALMNRSAKF---------------------QQIVRGMNQVLDVP-- 440
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA 468
+TVK RTG+ + N+ H +P+ RDWGA
Sbjct: 441 --------------------------------LTVKIRTGVQERVNLAHRLLPELRDWGA 468
Query: 469 SLITL 473
+L+T+
Sbjct: 469 ALVTV 473
>gi|156839540|ref|XP_001643460.1| hypothetical protein Kpol_483p21 [Vanderwaltozyma polyspora DSM
70294]
gi|187471051|sp|A7TQ73.1|DUS3_VANPO RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|156114071|gb|EDO15602.1| hypothetical protein Kpol_483p21 [Vanderwaltozyma polyspora DSM
70294]
Length = 664
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 186/619 (30%), Positives = 290/619 (46%), Gaps = 112/619 (18%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
+ G+A IK EFI + + + N+ + + + E K +K+K+ +GQNK
Sbjct: 25 SKGIAHIKAEFIAKSNDNSQFQQAYNDEEIADADRIGAE----GGKNSRKHKKKQRGQNK 80
Query: 63 ARGPTFVTKPEDCYCP-----FLKDSTLEQTCKYGEKCKFVHD-KNVFMKSKPE---DIS 113
+R V K E CP + +D E C++G+KC+FVHD K KPE D
Sbjct: 81 SRDNRQV-KEEKVLCPKYIQGYSEDG--ESLCQFGDKCRFVHDIKEYLSHKKPEIELDQF 137
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVG-NKTVNMLANEVRQ 172
+ C VF G+CPMG CRF SSH D+ +VK +E + + VN + +E +
Sbjct: 138 KICPVFDALGFCPMGFKCRFMSSHFDKENFKLVKRGTDEERQKLWSLDHEVNRITSEEKL 197
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKD-TDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
L K + F KS ++ + + E +D T +++ + ++ V++ +
Sbjct: 198 SLIKRRFPFTKSNEVLDIIDSIQQEFRDITAPKVSKEEASEDKPKDSNEAEVAPQVLQRE 257
Query: 232 EETKSGPVLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
EE K ++ +K K++ EKK +D + K +SPLTTVGNLP+RRL +K GAD+
Sbjct: 258 EELKKKREHQRELYLKYKDTRYFAQEKKDLDLRRKKIVSPLTTVGNLPYRRLMRKLGADV 317
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQMAVDF 343
T SEMA+A L++ + EWAL K H +E FGVQ+ C L + ++
Sbjct: 318 TYSEMALAVPLIQGTNSEWALPKAHSTEIPGFGVQIACSKAWQAAKAAEALAKFTPDINE 377
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
+++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 378 INLNSGCPIDLLYRQGSGSALL------------DNPARMIRC----------------- 408
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPK 462
+ MN VS S+PITVK RTG + + + +
Sbjct: 409 --------------------------LNAMNYVSDSIPITVKIRTGTRDSHPVADTLVKR 442
Query: 463 F-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521
+ + ITLHGR+R+QRYT+ ADWDY+ A+ R+ AS +
Sbjct: 443 LVYETDVAAITLHGRSRQQRYTRVADWDYVSTVAK--------------SLRESEASFLE 488
Query: 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
+E R +K+ GNGD+ ++ED+ L +I +M+ R
Sbjct: 489 -SAEGKESRESKRR--------------IQFVGNGDVNNFEDWHRILNNDENIDSIMVAR 533
Query: 582 GALIKPWIFQEIKEKKLFD 600
GALIKPW+F+E+ ++ D
Sbjct: 534 GALIKPWVFEEVDAQQHLD 552
>gi|164663047|ref|XP_001732645.1| hypothetical protein MGL_0420 [Malassezia globosa CBS 7966]
gi|190359304|sp|A8PTG4.1|DUS3_MALGO RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|159106548|gb|EDP45431.1| hypothetical protein MGL_0420 [Malassezia globosa CBS 7966]
Length = 766
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 256/593 (43%), Gaps = 151/593 (25%)
Query: 48 KKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
K+ KKN V + A G T + P P D T++ + G C +
Sbjct: 174 KRIKKNTDVTADAHPASGSTTPSAPT---APTTHD-TVQASVVLGTTCPY---------- 219
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDE-----------------NGGNIVKEDV 150
F + G CPMG CRF +H+ G +V+++
Sbjct: 220 -----------FQERGTCPMGWKCRFLGAHVRRLSASCRVLGAEAQGMLGTGLELVEDEA 268
Query: 151 LKE-W-------KNTVGNKT--VNMLANEVRQDLRKHTYNFEKSEKICKE--------NK 192
K W +N ++ VN LA++V + LR Y F+K+ I +
Sbjct: 269 KKHAWLHRSPYMRNEAQPESDQVNWLASDVARRLRSRKYTFDKAPAITSALRKEVDMLSA 328
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT--DIIKIKNS 250
+ E T+ +V E + + + ++ ++G D D +++
Sbjct: 329 MTPAEAASTE--VGKGPLRVNYEHERLVADPSATLEACEDALRNGGNDDAAADTARVRPC 386
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
EK+++ W+G LYL+PLTT GNLPFRRLC +G+DI C EM +A L+ EW+L++R
Sbjct: 387 EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRW 446
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
E E +FG Q+CG P +L ++L ++ +DFVDVN GCPI+ +Y +G+GS LL A
Sbjct: 447 EGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHA 506
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
N G I++
Sbjct: 507 NKLG---------------------------------------------------RIVRG 515
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
+ + E+ P+T+K RTG F +WG ++LHGR+R+QRY ADW
Sbjct: 516 MSEALGEI---PLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKNDADW 572
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YI C + +H+ + R W E ++ + D
Sbjct: 573 AYIRTCV-------DTLHDAV---RTW----------NEEPQHADEPD----------MV 602
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P P+YGNGD+ + DY + L+ + + G MI RGALIKPWIF EIKE++ +DI
Sbjct: 603 PVPVYGNGDVYGWRDYYDHLEHA-HVDGTMIARGALIKPWIFTEIKERRDWDI 654
Score = 45.4 bits (106), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
K ++ +GQNK R TF T+ ED + +T CK+G+ CKF HD +++ KP D
Sbjct: 79 KPRKRARGQNKGR--TF-TRTEDNIALCTQIATGRDACKFGDSCKFTHDLCTYLEQKPRD 135
Query: 112 ISEQCYVFLQH 122
I + H
Sbjct: 136 IETPPHPVSSH 146
>gi|125589164|gb|EAZ29514.1| hypothetical protein OsJ_13588 [Oryza sativa Japonica Group]
Length = 685
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 181/623 (29%), Positives = 264/623 (42%), Gaps = 177/623 (28%)
Query: 44 GTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNV 103
G A KK+K+ LK + K K C + S +CKYG+ C+F HD +
Sbjct: 65 GGAVVAEKKSKRQLKRERKQE-----QKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDA 119
Query: 104 FMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG----------NIVKEDVLKE 153
++ KP D+ C CP G+ CRF +H D + N + +D+ K
Sbjct: 120 YLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQKL 179
Query: 154 -WKN------------TVGNKTV-----------------NMLAN--EVRQDLRKHTYNF 181
WKN +G K V N+ N E ++ L N
Sbjct: 180 LWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNA 239
Query: 182 EKSEKICKENKASKNE-----------------NKDTDDCCKNQDSKVIEGREEINTPNT 224
E +C+E S+ E +K D + + E PN
Sbjct: 240 ECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDPNL 299
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+ ++ + S TD+I + EKK ID++ KLYL+PLTTVGNLPFRRLCK GA
Sbjct: 300 SNGLEPSNNSSS---CRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGA 356
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
DITC EMA+ CT LL+
Sbjct: 357 DITCGEMAM--------------------------------------CTNLLQ------- 371
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
Q S LL+R +LFGVQ+CG P + + +L++ + VDF+D
Sbjct: 372 -------------GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFID 418
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFM 460
+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TVK RT + N + +
Sbjct: 419 INMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIV 478
Query: 461 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520
DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ +++ N
Sbjct: 479 SDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN------------- 525
Query: 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580
GD+ S+ D+ + + IS MI
Sbjct: 526 -----------------------------------GDVFSFTDWNKHVSGCSKISTSMIA 550
Query: 581 RGALIKPWIFQEIKEKKLFDIYA 603
RGALIKPWIF E+KE++ +DI +
Sbjct: 551 RGALIKPWIFTEVKEQRHWDITS 573
>gi|115456906|ref|NP_001052053.1| Os04g0117600 [Oryza sativa Japonica Group]
gi|75233055|sp|Q7XT07.2|DUS3L_ORYSJ RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=Zinc finger CCCH domain-containing protein
26; Short=OsC3H26; AltName: Full=tRNA-dihydrouridine
synthase 3-like
gi|38344118|emb|CAE01725.2| OSJNBb0050O03.15 [Oryza sativa Japonica Group]
gi|113563624|dbj|BAF13967.1| Os04g0117600 [Oryza sativa Japonica Group]
Length = 685
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 181/623 (29%), Positives = 264/623 (42%), Gaps = 177/623 (28%)
Query: 44 GTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNV 103
G A KK+K+ LK + K K C + S +CKYG+ C+F HD +
Sbjct: 65 GGAVVAEKKSKRQLKRERKQE-----QKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDA 119
Query: 104 FMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG----------NIVKEDVLKE 153
++ KP D+ C CP G+ CRF +H D + N + +D+ K
Sbjct: 120 YLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQKL 179
Query: 154 -WKN------------TVGNKTV-----------------NMLAN--EVRQDLRKHTYNF 181
WKN +G K V N+ N E ++ L N
Sbjct: 180 LWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNA 239
Query: 182 EKSEKICKENKASKNE-----------------NKDTDDCCKNQDSKVIEGREEINTPNT 224
E +C+E S+ E +K D + + E PN
Sbjct: 240 ECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDPNL 299
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+ ++ + S TD+I + EKK ID++ KLYL+PLTTVGNLPFRRLCK GA
Sbjct: 300 SNGLEPSNNSSS---CRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGA 356
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
DITC EMA+ CT LL+
Sbjct: 357 DITCGEMAM--------------------------------------CTNLLQ------- 371
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
Q S LL+R +LFGVQ+CG P + + +L++ + VDF+D
Sbjct: 372 -------------GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFID 418
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFM 460
+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TVK RT + N + +
Sbjct: 419 INMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIV 478
Query: 461 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520
DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ +++ N
Sbjct: 479 SDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN------------- 525
Query: 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580
GD+ S+ D+ + + IS MI
Sbjct: 526 -----------------------------------GDVFSFTDWNKHVSGCSKISTSMIA 550
Query: 581 RGALIKPWIFQEIKEKKLFDIYA 603
RGALIKPWIF E+KE++ +DI +
Sbjct: 551 RGALIKPWIFTEVKEQRHWDITS 573
>gi|254579020|ref|XP_002495496.1| ZYRO0B12716p [Zygosaccharomyces rouxii]
gi|238938386|emb|CAR26563.1| ZYRO0B12716p [Zygosaccharomyces rouxii]
Length = 645
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 193/615 (31%), Positives = 295/615 (47%), Gaps = 124/615 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A+IK E+I+ + +T+++ + + VE K + +GQNK R
Sbjct: 27 GIAQIKAEYIIPSTGPAQTRNEAIDTEEQPSDRMLVE-----TGGGKGKGKKKRGQNKNR 81
Query: 65 GPTFVTKPEDCYCP-FLK---DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ----C 116
TK E+ CP FL+ +S Q C +G+ CKFVHD +++ +K ++ Q C
Sbjct: 82 D-NRQTKEENPLCPKFLQGNPESRGTQPCPFGDDCKFVHDVQLYLSTKKPEVESQFFKEC 140
Query: 117 YVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
VF GYCPMG CRF SHL+++ +V+ + + K N VN ++++ + DL K
Sbjct: 141 PVFKSLGYCPMGFKCRFLGSHLNKDPLQLVQLESSERAKLYEANHEVNHISSDQKLDLVK 200
Query: 177 HTYNFEKSEKICK-----ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
+ FEKSE++ + + AS+ +N++ + + REE D ++
Sbjct: 201 KRFLFEKSEQVLEIIDALQRGASEGKNEEEKPKSDEPKAPQVLQREEEQRLRRDRQRELY 260
Query: 232 EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
+ K DT SEKKK+D K +SPLTTVGNLP+RRL +K GAD+T SEMA
Sbjct: 261 NQYK-----DTRYFA---SEKKKLDLHHKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMA 312
Query: 292 VATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLG 349
+A L++ + EWAL K H SE FGVQ+ + + K T+ L + V V++N G
Sbjct: 313 LAVPLIQGTNSEWALPKAHVSEYPGFGVQIACSKAWQAAKATEALAAHTSQVSEVNLNCG 372
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 CPIDLLYRQGSGSALL------------DNPARMIRC----------------------- 397
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK--FRDW 466
+ M+ VS +P++VK RTG KD + + + + +
Sbjct: 398 --------------------LNAMSYVSGEIPVSVKIRTGT-KDGHPVAGLLARRLVNET 436
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCA-QLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
+ +TLHGR+R QRYTK ADWDY+ + A +L S ++ GR
Sbjct: 437 DVAAMTLHGRSRAQRYTKNADWDYVVRVAEELRSCEDE----------------YDREGR 480
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
R QR GNGD+ ++ED+ + +S +I VM+ RGALI
Sbjct: 481 QRSQRIQ-------------------FVGNGDVNNFEDWYAHVNRSDAIDSVMVARGALI 521
Query: 586 KPWIFQEIKEKKLFD 600
KPWIF+E+ ++ D
Sbjct: 522 KPWIFEEVDAQQHLD 536
>gi|443895009|dbj|GAC72355.1| uncharacterized conserved protein [Pseudozyma antarctica T-34]
Length = 816
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 156/551 (28%), Positives = 235/551 (42%), Gaps = 147/551 (26%)
Query: 111 DISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN------------------IVKEDVLK 152
D + C +F G+C MG CRF +H+ G + + + +
Sbjct: 235 DWATSCPIFALKGFCTMGWKCRFLGAHVRLVGASSLADAANPTGFAGSGLELVTDAERMA 294
Query: 153 EWKNTV----------GNKTVNMLANEVRQDLRKHTYNFEKSEKICK--ENKASKNENKD 200
W+ VN + LR Y K+ + K E++A + D
Sbjct: 295 AWRARPRAFALKDADPDQDEVNFGTGAGMKSLRTSKYPLPKTRAVLKYLEDEAKQLATSD 354
Query: 201 TDDCCKNQ----------------------------DSKVIEGREEINTPNTDDVIKVQE 232
+ + K E EEI + + +
Sbjct: 355 PQASTAGKGAIPHEVIASAIAGNNAATSAAKVAADAEGKTAEELEEIENALRNASTRQAD 414
Query: 233 ETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
S +D + +I+ SEK++++W+G+LYL+PLTT GNLPFRR+C +G+DI C EM +
Sbjct: 415 AASSSSGID--VARIRPSEKRRLNWKGELYLAPLTTTGNLPFRRICTSFGSDIHCGEMGL 472
Query: 293 ATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGC 350
A L + EW+L++RH SE +FG QLCG P +L + L+ ++ +DFVD+N GC
Sbjct: 473 AESFLHGNASEWSLVRRHASERIFGTQLCGGKPDLLVPVAEALKAEVGDGLDFVDINCGC 532
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI+ +Y +G+GS LL A +K ++++ V
Sbjct: 533 PIDLVYNRGAGSALLDHA---------------SKLSKIVRGMSAV-------------- 563
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
+ P+T+K RTG F DWG S
Sbjct: 564 -------------------------LGDTPLTIKLRTGTTAKQTTHKLFARLQTDWGVSA 598
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
TLHGR+R+QRY ADW YI CA + + N R+W S
Sbjct: 599 ATLHGRSRKQRYKNDADWGYIATCA-------STLRN---SVREWNES------------ 636
Query: 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
++ AD + P P+YGNGD+ S++DY E L ++ + G MI RGALIKPW+F
Sbjct: 637 -SRHADEPEM-------VPIPIYGNGDVYSWQDYYERLDRT-GVDGEMIARGALIKPWLF 687
Query: 591 QEIKEKKLFDI 601
EIKE++ +DI
Sbjct: 688 TEIKERRDWDI 698
>gi|148706256|gb|EDL38203.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_c [Mus
musculus]
Length = 429
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 176/305 (57%), Gaps = 10/305 (3%)
Query: 58 KGQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 96 RGQNKSRPHVKPAHYDK--DRLCPSFLQEPAT--PCAFGDRCRFLHDVGRYLETKPADLG 151
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q
Sbjct: 152 PRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQ 209
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LRK FE++E+ S + K +++T +
Sbjct: 210 LRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPV 269
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
GP+ D D+I+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 270 PTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 329
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 330 TNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPID 389
Query: 354 FIYKQ 358
+YK+
Sbjct: 390 LVYKK 394
>gi|30851162|gb|AAH52481.1| Dus3l protein [Mus musculus]
Length = 426
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 176/305 (57%), Gaps = 10/305 (3%)
Query: 58 KGQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 93 RGQNKSRPHVKPAHYDK--DRLCPSFLQEPAT--PCAFGDRCRFLHDVGRYLETKPADLG 148
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q
Sbjct: 149 PRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQ 206
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LRK FE++E+ S + K +++T +
Sbjct: 207 LRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPV 266
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
GP+ D D+I+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 267 PTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 326
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 327 TNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPID 386
Query: 354 FIYKQ 358
+YK+
Sbjct: 387 LVYKK 391
>gi|339249059|ref|XP_003373517.1| conserved hypothetical protein [Trichinella spiralis]
gi|316970336|gb|EFV54297.1| conserved hypothetical protein [Trichinella spiralis]
Length = 747
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 173/603 (28%), Positives = 268/603 (44%), Gaps = 172/603 (28%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
MD+SGVA +K E+IV K D A++ F++ + KG
Sbjct: 1 MDSSGVAPLKAEYIVAKKEK---------------------DGDNAQENFQEKR---KGL 36
Query: 61 NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL 120
N+ R + + CP + ++ CK+GE C++ HDK +K DIS+ C +F
Sbjct: 37 NRKR-QFYTVDDKKQLCPNILENI---ECKFGENCRYAHDKAAHWDNKLPDISDNCPLFE 92
Query: 121 QHGYCPMGIACRFGSSHLD-ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
+ G+C G+ CRF H + EN NIV K++ G + E R D
Sbjct: 93 ELGFCKFGLNCRFAKGHTNLENLENIV--------KDSNGE-----MIKEWRFD------ 133
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
++N+ S+ + K+ + S+ R E
Sbjct: 134 ---------EQNQISRKQKKEIRNLAHRLSSEYGNVRFES-------------------- 164
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
D D K +KKIDW GKL L+PLTT+GNLPFRRLC ++GA++TCSEM ++T L +
Sbjct: 165 -DFD----KERCRKKIDWSGKLCLAPLTTLGNLPFRRLCVEFGAEVTCSEMVLSTSLFQG 219
Query: 300 SPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
+ + + D F + N+ + ++ +L+ +
Sbjct: 220 T------VLKKSFSDKFTCKKVLNSIGLQSEWARLVRHE--------------------- 252
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
FG+Q+C N P T+++++ DF+D+N CP++ I + G G+ L
Sbjct: 253 -------SEKCFGIQICVNKPAQAWTVTKIIKKFAEFDFLDINAACPLDDICRAGGGANL 305
Query: 420 LQRANILQSVI-TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTR 478
L R L+ V+ + + +P+T+K RT
Sbjct: 306 LVRPKKLKEVVQSTKAALGDVPLTLKLRT------------------------------- 334
Query: 479 EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538
D+N++H F+P WG + LHGR+R QRY ++DW
Sbjct: 335 ----------------------DSNVVHQFLPDVYSWGVDRVVLHGRSRNQRYINKSDWH 372
Query: 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
YI++CA + SP PLYG GD+LSYEDY + L + GV + RGALIKPWIF EI +++
Sbjct: 373 YIDQCASV-SPVPLYGIGDVLSYEDYYQHL-NCGKVQGVAVARGALIKPWIFTEIIQQRH 430
Query: 599 FDI 601
+DI
Sbjct: 431 WDI 433
>gi|401840060|gb|EJT42982.1| DUS3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 676
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 183/621 (29%), Positives = 289/621 (46%), Gaps = 109/621 (17%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEEL-EVEDDGTAKKKFKKNKQVLKGQN 61
+ G+A +K E+IV V + + + E + KK + + +GQN
Sbjct: 26 SKGIAHLKSEYIVPLSQGAPQQTAVYDEEMSSDRMVGEASGNSGTNKKNRGGRGKKRGQN 85
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE----QCY 117
K R V K ++ CP L + + C +G+ C+FVHD +++ +K +I C
Sbjct: 86 KNRDNRQV-KEQNALCPRLIRGDVSK-CSFGDSCRFVHDIKLYLSTKKPEIESGMFLSCP 143
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANEVRQDLR 175
VF GYCPMG CRF SSHL++ ++ + T+ + N ++ E + DL
Sbjct: 144 VFSSLGYCPMGFKCRFLSSHLNKEESTLISTKEVDPETQTIWSVKGETNHISPERKLDLI 203
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDS------KVIEGREEINTPNTDDVIK 229
K + F KS ++ + + + E +D+ + DS K E +E P V +
Sbjct: 204 KRRFPFTKSNEVLEIIDSFQQECRDSMKAEEEGDSTPKGKGKDQEFDKESGQPVAPQVEQ 263
Query: 230 VQEETKSGPVLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+E + ++ +K K++ EKK +D K +SPLTTVGNLP+RRL +K GA
Sbjct: 264 RIKELSEHRIRQREVYLKYKDTRYFAQEKKPLDLHRKKIISPLTTVGNLPYRRLMRKLGA 323
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQMAV 341
D+T SEMA+A L++ + EWAL K H+SE FGVQ+ C L + +
Sbjct: 324 DVTYSEMALAIPLIQGTNSEWALPKAHKSEVPGFGVQVACSKAWQAAKAAEALTDSVSDI 383
Query: 342 DFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV 401
+++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 384 SEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC--------------- 416
Query: 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFM 460
+ MN VS +PITVK RTG + + I +
Sbjct: 417 ----------------------------LNAMNYVSKDIPITVKIRTGTKEGHPIAEGLV 448
Query: 461 PKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+ + + ITLHGR+R+QRYTK ADW+Y+ + A + + + F++
Sbjct: 449 KRLVNETDVAAITLHGRSRQQRYTKSADWEYVSQVA-------DTLRSAEADFKE----- 496
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
T G +E R +K+ GNGD+ ++ED+ L+ + +I VM+
Sbjct: 497 -TEQG--KESRDSKKR--------------IQFVGNGDVNNFEDWYRYLEGNTNIDSVMV 539
Query: 580 GRGALIKPWIFQEIKEKKLFD 600
RGALIKPWIF+E+ ++ D
Sbjct: 540 ARGALIKPWIFEEVDSQQYLD 560
>gi|406602284|emb|CCH46122.1| tRNA-dihydrouridine synthase [Wickerhamomyces ciferrii]
Length = 657
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 191/612 (31%), Positives = 290/612 (47%), Gaps = 113/612 (18%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIE---CVNETDKRKLEELEVEDDGTAKKKF----KKNKQ 55
+ G+A IK+EFIV D ++ +I+ TD+ E E+ K K KN++
Sbjct: 36 SKGIAHIKKEFIV-DSRQIAAIDDDSAEASTDRNTGGENGGENGKGKKGKRTRGQNKNRE 94
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISE 114
+ + Q + R C L D L++ CK+G E C+ HD + +++SK DI
Sbjct: 95 IKQNQEEVR-----------LCQSLVDPDLDKVCKFGAENCRNSHDIDSYLQSKGPDIQG 143
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C VF GYCP G CRF SH DE ++K D++K + N VN + N+ + L
Sbjct: 144 VCPVFNAIGYCPAGFKCRFLHSHYDEENKILIK-DLVKFEDSKDKNYEVNKITNDEKLSL 202
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
K + F S + K + ++ NK D K +++ E T + QE+T
Sbjct: 203 IKKKFIFTSSTEAIKIIDSIQDGNKKRDLAKKKTNNEGEETEVTPETTTETEQTTAQEQT 262
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
K + D + EKKKID GK LSPLTTVGNLP+RRL K G D+T SEMA+
Sbjct: 263 KEN-INDYVETRFFAGEKKKIDLVGKKILSPLTTVGNLPYRRLMKTLGCDVTYSEMALTL 321
Query: 295 ELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPI 352
L++ + EWAL K H +E FGVQ+ P+ K ++++ + +V +++N GCPI
Sbjct: 322 PLIQGTNSEWALPKAHNTEYPGFGVQIATAKPWQAAKASEIIGKLCPSVSELNLNSGCPI 381
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ +Y+QGSGSGLL + P +F+
Sbjct: 382 DLLYRQGSGSGLLDQ--------------------------------------PAKFL-- 401
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLI 471
IL S+ C E+ P TVK R G ++ I HN + + ++ + +
Sbjct: 402 -----------RILNSMNYCSGEI---PTTVKIRMGTKDNHPIAHNLVKRIVKETQTAAV 447
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGR+R+QRYT++A+WDYI + ++ R EQ
Sbjct: 448 TLHGRSRQQRYTREANWDYIGEVGKVL--------------------------RKTEQEL 481
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
D ++ GNGD +++D+ +++ ++P I VMI RGALIKPWIF+
Sbjct: 482 EDDKDRKDFQRIN-------FVGNGDCFNFDDWYKAV-ENPYIDSVMIARGALIKPWIFE 533
Query: 592 EIKEKKLFDIYA 603
EI+ ++ D A
Sbjct: 534 EIESQQYLDKSA 545
>gi|300122290|emb|CBK22863.2| unnamed protein product [Blastocystis hominis]
Length = 516
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 171/537 (31%), Positives = 245/537 (45%), Gaps = 161/537 (29%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQC--YVFL--------QHGYCPMGIACRFGSS 136
+ C YG CK+ HD F+K++ EDI C +V L HGYCPMG+ CR+ S
Sbjct: 10 EPCPYGAACKYEHDIPTFLKNRGEDIGPVCPFWVLLGFSYSPQNAHGYCPMGLNCRWAMS 69
Query: 137 HLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQ---DLRKHTYNFEKSEKICKENKA 193
H + I K +T + N R +RK TY F+ +
Sbjct: 70 HTSASFEPIEKPQA---------EQTPYVELNTFRSIPLQIRKKTYVFQFD--------S 112
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
K K+T + D+ I+ RE TP++ + GP+L D +
Sbjct: 113 WKQNAKNTPEI----DASGIDIRE---TPSSRSFAAI------GPILPPD--------RA 151
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+D++GK+Y++PLTTVGNLPFRR+C + GADITCSEMA+ LL S EWAL++RH SE
Sbjct: 152 PLDFRGKIYIAPLTTVGNLPFRRICVELGADITCSEMAMCGNLLHSCASEWALLRRHPSE 211
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
FGVQ+ +LL + VDFVD+N GCPI+ + K G+G+GLL +
Sbjct: 212 QCFGVQITTGKVEDAGYVCELLRREGTVDFVDLNAGCPIDAVEKAGAGAGLLTKV----- 266
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
G L+R ++ CM
Sbjct: 267 --------------------------------------------GRLKR------IVRCM 276
Query: 434 -NEVSSLPITVKTRTGIHKDNNIIHNFMPKF------RDWGASLITLHGRTREQRYTKQA 486
+ ++P+ VK RTG H+ N H +P+ R S + +HGRT++ RYTK A
Sbjct: 277 LGSLENVPLMVKVRTGDHE--NTSHRLVPQLQRIRGNRGNRVSGVIIHGRTKQGRYTKSA 334
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW+YI+ CA+ S+D + +P+ +
Sbjct: 335 DWEYIKACAK--SQDAD-----LPRLQ--------------------------------- 354
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ GNGD+ EDY ++ + G+MIGRGALIKPWI EIKE++ +DI A
Sbjct: 355 -----VIGNGDVFDNEDYWNRMEDG-VLDGIMIGRGALIKPWICTEIKERRHWDISA 405
>gi|403418685|emb|CCM05385.1| predicted protein [Fibroporia radiculosa]
Length = 1037
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 192/659 (29%), Positives = 288/659 (43%), Gaps = 175/659 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIE-----CVNETDKRKLE--------ELEVEDDGTAKKKFK 51
G A IK EF+V + + + N D R+ E E + G +KK
Sbjct: 377 GTAPIKPEFLVSFVSRDIPDDDAAEGSTNHADGRRGENSLATIDSEATADTSGAQRKKSY 436
Query: 52 KNKQVLKGQNKARGPTFV-TKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-- 108
K+K+ +G NK R V + E C+ +TC++G++C+F HD ++ +K
Sbjct: 437 KDKKNKRGANKGRRFQRVHDEVELCW-----RVASGRTCEFGDECRFTHDVATYLSAKLR 491
Query: 109 ------PEDISEQ-------------------------CYVFLQHGYCPMGIACRF--GS 135
PED+S+ C V+ + G C G+ CRF G
Sbjct: 492 DIRFPSPEDLSDSPPFVKPPPDAEMSENNNSSVDSSTVCPVYARCGECKQGLKCRFLGGH 551
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASK 195
S +E+G + D K+ + +N + +E + +R Y ++ +E +A+
Sbjct: 552 SRKNEDGVLELTTDEEKKARAASMETELNSIHSEAFKLIRTKKYPHPIADSYLRELQAAG 611
Query: 196 NENKDTDDCCKNQDSKVIEGR--EEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
D D D + G E TP + + + D+ + ++ +EKK
Sbjct: 612 ----DDDKAKATTDQPEVPGSLGEGSETPGAAQSKRDESQD------DSPDVPMRFAEKK 661
Query: 254 KIDWQGK-------LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
++ W GK L SPL+ + PFRRLC +G DITC EM +A L+ S +EW+L
Sbjct: 662 RLHWSGKTCKSHMILRRSPLSGIW-WPFRRLCVDYGVDITCGEMGLAVSFLQGSKEEWSL 720
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFIYKQGSGSGL 364
++RH SE +FGVQ+ G+ P +L +++ + A +DFVDVN GCPI+ +YKQGSGS L
Sbjct: 721 VRRHPSESIFGVQVAGSKPSLLVPAAEIIARECAGNLDFVDVNCGCPIDLVYKQGSGSAL 780
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLLQRA 423
L A G + G N LG P+ + G G
Sbjct: 781 LDAAGKLGKIVVGMNK---------------------ALGDIPVTVKLRTGVKDG----- 814
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQRY 482
R HK MP+ ++GAS +TLHGRTR+QRY
Sbjct: 815 ----------------------RNNAHK-------LMPRLSTEFGASALTLHGRTRQQRY 845
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
TK ADWDYI+ C + R+RE A+ D
Sbjct: 846 TKLADWDYIKLCVEAV--------------------------RSRE------AEED---- 869
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P P++G GD S +DY + ++ + G+MIGRGALIKPWIF E+KE++ +DI
Sbjct: 870 ----LPPVPIFGGGDCFSSQDYWQKMES--GVDGIMIGRGALIKPWIFTEVKERREWDI 922
>gi|357467457|ref|XP_003604013.1| tRNA-dihydrouridine synthase 3-like protein [Medicago truncatula]
gi|355493061|gb|AES74264.1| tRNA-dihydrouridine synthase 3-like protein [Medicago truncatula]
Length = 691
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 205/432 (47%), Gaps = 126/432 (29%)
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
Q RK N E E EN+ +++ D CC + E E+ TP TD +K
Sbjct: 274 QKKRKTAENCEDEET---ENEVVSVDDQIVDGCCIRSEP---EAGTEVITPETDLSLKSH 327
Query: 232 EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
+ EKK ID++ KLYL+PLTTVGNLPFRR+CK GADITC EMA
Sbjct: 328 -----------------SREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADITCGEMA 370
Query: 292 VATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP 351
+ T LL+ EWAL++RH SEDLFGVQ+CG +P + + +L+E++ VDF+D+N+GCP
Sbjct: 371 MCTNLLEGQASEWALLRRHSSEDLFGVQICGAHPDTVGRAVELIEKECTVDFIDINMGCP 430
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ + +G+GS LL T+ + Q VV+
Sbjct: 431 IDIVVNKGAGSALL---------------------TKPMRMQNVVEV------------- 456
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
SG + +P+T+K RT + N I + + F WGAS +
Sbjct: 457 ----ASGTVD-----------------IPVTIKVRTAYFEGRNRIDSLIANFSSWGASAV 495
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
T+HGR+R+QRY+K ADWDY+ +C + + ++ N
Sbjct: 496 TIHGRSRQQRYSKPADWDYVYQCTRKAPNNLQVVGN------------------------ 531
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
GD+ S+ D+ + P ++ +I RGALIKPWIF
Sbjct: 532 ------------------------GDVFSFVDWNNHKTECPELATCLIARGALIKPWIFT 567
Query: 592 EIKEKKLFDIYA 603
EIKE++ +DI +
Sbjct: 568 EIKEQRHWDISS 579
>gi|170579239|ref|XP_001894741.1| dihydrouridine synthase domain containing protein [Brugia malayi]
gi|158598545|gb|EDP36417.1| dihydrouridine synthase domain containing protein [Brugia malayi]
Length = 832
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 160/517 (30%), Positives = 224/517 (43%), Gaps = 157/517 (30%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIV 146
+ CKY EKC +H ++K KP DI CY F Q G CP ACRF ++H N I
Sbjct: 349 KPCKYTEKCTSLHSIEEYLKIKPPDIGSICYNFDQRGVCPFSFACRFANAHTS-NAKQIT 407
Query: 147 KEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCK 206
K + KT+N + ++ LRK Y+F KS++ E + C
Sbjct: 408 KS------PDVSYKKTLNANSVPLQIALRKRKYDFGKSDQAVAELLQTLG--------CM 453
Query: 207 NQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPL 266
+++ I+ RE GKLYL+PL
Sbjct: 454 ERENLKIDMRE---------------------------------------LSGKLYLAPL 474
Query: 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY 326
TT+GNLPFRRLC +GA+ITCSEM + T L + EW+L+KRH +E FGVQL G P
Sbjct: 475 TTLGNLPFRRLCVDFGAEITCSEMGICTNYLNGTSSEWSLLKRHPNEKYFGVQLAGGYPD 534
Query: 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
+++ Q++ E +DF+D+N GCPI+ + ++G G L R+N
Sbjct: 535 SMSRAAQIIAENEQIDFIDINCGCPIDLVNEKGGGCSLALRSN----------------- 577
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
+L+E + V N P+ + G G+ + V+
Sbjct: 578 -KLVEVMKTMSKVIGN--TPLTLKLRTGIKEGVYTAHQTISKVV---------------- 618
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
+ P LITLH R++ QRYTK ADW Y ++C++ C NI
Sbjct: 619 -----------KYCP------PQLITLHPRSKAQRYTKLADWSYTQQCSEAC---QNI-- 656
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
P + GD+LSY DY E
Sbjct: 657 --------------------------------------------PFWACGDVLSYTDYYE 672
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
L+K P ++GVMIGRGAL+KPWIF EIKE + +DI A
Sbjct: 673 KLEKYP-VNGVMIGRGALMKPWIFTEIKECRHWDITA 708
>gi|431922347|gb|ELK19438.1| tRNA-dihydrouridine synthase 3-like protein [Pteropus alecto]
Length = 439
Score = 232 bits (591), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 135/375 (36%), Positives = 203/375 (54%), Gaps = 42/375 (11%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAK----KKFKKNKQV 56
++A G K QE D E E + +LEE +V D T + ++ + ++
Sbjct: 45 LEARGQEKPSQETDAGDPDGCDLAE--PEAKRIRLEEGQVGDGQTEEAAEPREQPQAQKR 102
Query: 57 LKGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK R P K + CP L + + C +G++C+F+HD ++++KP D+
Sbjct: 103 ARGQNKGRPHVKPNHYDK--NRLCPSLVQESATK-CFFGDRCRFLHDVGRYLETKPADLG 159
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
C +F +G CP G+ CRF +HL G N+V+ +V + N L ++Q
Sbjct: 160 PCCVLFETYGRCPYGVTCRFAGAHLGPEGQNLVQREVAQ------APPVRNGLDKALQQQ 213
Query: 174 LRKHTYNFEKSEKICKE----------NKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
LRK +FE++E+ ++ A+ E D C Q + + G N P
Sbjct: 214 LRKRQVHFERAEQALRQLGKGHLPGPIPPATVPEGAPGQDICDTQQAPLEPG---TNPPP 270
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
V GP+ D DI++++ EK+++D GKLYL+PLTT GNLPFRR+CK++GA
Sbjct: 271 GSPV------QTCGPLTDEDIVRLRPCEKRQLDISGKLYLAPLTTCGNLPFRRICKRFGA 324
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
D+TC EMAV T LL+ EWAL+KRH+ ED+FGVQL G P +TKC + VDF
Sbjct: 325 DVTCGEMAVCTNLLQGQTSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAAI-----EVDF 379
Query: 344 VDVNLGCPIEFIYKQ 358
VD+N+GCPI+ +YK+
Sbjct: 380 VDINVGCPIDLVYKK 394
>gi|393216523|gb|EJD02013.1| zinc finger dihydrouridine synthase [Fomitiporia mediterranea
MF3/22]
Length = 653
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 165/558 (29%), Positives = 246/558 (44%), Gaps = 164/558 (29%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI-----------------------------------S 113
C++G+ C+F HD + ++ KP+D+ S
Sbjct: 104 CEFGKDCRFTHDIDEYLAQKPKDLTFPTSVDSVSIQAYSAADCSNDIASVSELPPSVDPS 163
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
C VF G C G CRF SH+ E+G + +D K + + +N + +
Sbjct: 164 VYCPVFDAKGECSHGFKCRFLGSHIRKTESGTLEIVKDEEKVARRKLDTTELNYILLDSL 223
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
+ LR Y +E KE + S N K+ +E ++ +
Sbjct: 224 KQLRSKKYPQPITEAYLKELETSGNTKKEPARTTAQTTFSELE------------LMADE 271
Query: 232 EETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE-- 289
E++ DT + ++ +EKK+++W+G YL+PLTTVGNL A I+ +E
Sbjct: 272 NESQK----DTPDVPMRFNEKKRLNWRGLTYLAPLTTVGNL----------APISPAEKA 317
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM---AVDFVDV 346
M +AT L+ S +EW+L++RH SE FGVQL G+ P L +++ + +DFVDV
Sbjct: 318 MGLATSFLQGSKEEWSLVRRHPSERTFGVQLAGSKPGPLAAIAEVMAREFGPRGIDFVDV 377
Query: 347 NLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406
N GCPI+ +++ GSGS LL + P L+K
Sbjct: 378 NCGCPIDLVFRAGSGSALL------------DAPAKLSK--------------------- 404
Query: 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RD 465
IL + + E+ P+TVK RTG+ + N H FMP+ +
Sbjct: 405 ------------------ILVGMSRALGEI---PLTVKLRTGVKEGKNTAHKFMPRLAAE 443
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
G +TLHGRTR+QRYTK ADWDYI++C +H R
Sbjct: 444 TGIGAMTLHGRTRQQRYTKLADWDYIKECVD------------------------AVHAR 479
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
E+ +P P++G GD S +DY S+ S + GVM+GRGALI
Sbjct: 480 EVEEG----------------LAPIPIFGGGDAYSSQDYWGSIDYS-GVDGVMVGRGALI 522
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPWIF EIKE++ +DI A
Sbjct: 523 KPWIFTEIKERREWDISA 540
>gi|254572948|ref|XP_002493583.1| Dihydrouridine synthase [Komagataella pastoris GS115]
gi|238033382|emb|CAY71404.1| Dihydrouridine synthase [Komagataella pastoris GS115]
gi|328354589|emb|CCA40986.1| tRNA-dihydrouridine synthase 3 [Komagataella pastoris CBS 7435]
Length = 618
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 181/608 (29%), Positives = 284/608 (46%), Gaps = 141/608 (23%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A GV IK+EF+V +V+ + EE ++ ++K K + +GQNK
Sbjct: 37 AKGVTPIKKEFLVSTDKQVVYAD----------EESSLDRLNGSEKPQAKKSKKKRGQNK 86
Query: 63 ARGPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
R TK CP L D + C++G + C+F H+ ++ SKP+D+ C VF
Sbjct: 87 DRD-LKQTKEAVKLCPSLVDPETPKECRFGADACRFTHNIEEYLNSKPQDVQGVCPVFAA 145
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYCP G+ CR+ SSH G ++K+++L + + V + VN ++ + DL + + F
Sbjct: 146 IGYCPNGLKCRWLSSHY--KSGKLIKDEILCDKVSKV-DYEVNHISQNAKTDLSRKKFQF 202
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVI---EGREEINTPNTDDVIKVQEETKSGP 238
+ ++K+ DSKV + ++E+ N ++ ++
Sbjct: 203 DTADKM-----------------ILFLDSKVQVHDKTKQELQKENANNYVEP-------- 237
Query: 239 VLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK 298
K SEKKK++ + +SPLTTVGNLP+RRL K GADIT SEMA++ L++
Sbjct: 238 -------PFKVSEKKKLNVKNAKIVSPLTTVGNLPYRRLMKTLGADITYSEMALSLPLIQ 290
Query: 299 SSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIY 356
+ EWAL K H SE FGVQ+ + + K + + + V +++N GCPI+ +Y
Sbjct: 291 GTNSEWALPKAHSSEYPGFGVQIATSKHWTGAKAAEAIAKLTPQVSEINLNCGCPIDLLY 350
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
+QG GS L+++ P +L
Sbjct: 351 RQGQGSALMEQP-----------PKLL--------------------------------- 366
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG-ASLITLHG 475
+L+ + C E+ P+T K R G ++ + N + + + G +TLHG
Sbjct: 367 -------RVLKGMNYCSGEI---PVTFKLRIGTRDNHPLAENLVKRVCEEGDIGCVTLHG 416
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
RTR+QRYTK+ADW YI K Q+ RD N HN + +Q+
Sbjct: 417 RTRQQRYTKEADWSYISKVGQVV-RDYN--HNQLDD--------------------KEQS 453
Query: 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D D P GNGD ++ED+ +++ P+I VM+ RGALIKPWIF+EI
Sbjct: 454 DRD----------PIYFVGNGDCFTHEDWHKAV-SDPNIDSVMVARGALIKPWIFEEINS 502
Query: 596 KKLFDIYA 603
++ D A
Sbjct: 503 EQYIDKSA 510
>gi|625116|gb|AAB82358.1| Ylr401cp [Saccharomyces cerevisiae]
Length = 609
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK +D K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNEN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|389746404|gb|EIM87584.1| FMN-linked oxidoreductase [Stereum hirsutum FP-91666 SS1]
Length = 620
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 170/585 (29%), Positives = 245/585 (41%), Gaps = 170/585 (29%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI------------------------------------ 112
C++G +C+F HD ++ +KP DI
Sbjct: 26 CEFGAECRFSHDIPAYLAAKPRDIYFNITDPLTDTPPFVKLTGSENNMEAAVDSAQDSVD 85
Query: 113 -SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNI-VKEDVLKEWKNTVGNKTVNMLANEV 170
S C F + G C G CRF H+ + G + + +D K + + +N L +
Sbjct: 86 FSTHCPNFEETGACRHGFKCRFLGGHVRKEDGKLSLIQDDSKRSNSLRSSTEINYLDGQT 145
Query: 171 RQDLRKHTYNFEKSEKICKENKASKNEN-------------KDTDDCCKNQD--SKVIEG 215
+ LR Y + KE + +K+E KD +D S +I
Sbjct: 146 MKLLRTKKYPLPITAAYLKELEDAKDEENASSAKAKADATPKDPPTPASKEDTESAIIFK 205
Query: 216 REEINTPNTDDVIKVQ-------------EETKSGPVLDTDIIKIKNSEKKKIDWQGKLY 262
E D+++V + ++ DT ++ + EKK++ W K Y
Sbjct: 206 EPE------QDMVEVPPPSPSLLPAPAKYSDVEAAAQADTPDVRPRFVEKKRLVWSNKTY 259
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PLTTVGNLPFRRL GADITC EM +A L +S +EW+LI+RH E +FG+QL G
Sbjct: 260 LAPLTTVGNLPFRRLAVSLGADITCGEMGLANSFLSASKEEWSLIRRHPDEQMFGIQLAG 319
Query: 323 NNPYVLTKCTQLLEEQMA--VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N P +LT +++ + A +DFVD+N GCPI+ ++K GSGS LL G L G N
Sbjct: 320 NKPSLLTPAAEVIARECAGGIDFVDLNCGCPIDLVFKTGSGSALLDAPGKLGKILTGMN- 378
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ L E P+ + G G
Sbjct: 379 -------RALGE------------IPLTVKLRTGVREG---------------------- 397
Query: 441 ITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
R HK MP+ +W + +TLHGRTR+QRY K ADW YI +C
Sbjct: 398 -----RNTSHK-------LMPRIASEWNVAAMTLHGRTRQQRYAKLADWAYIRECVDAV- 444
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
R RE AD D P++G GD
Sbjct: 445 -------------------------RARE------ADEDLPR--------IPIFGGGDAF 465
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAI 604
S + Y +++S + G+M+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 466 SAQGYWSCVEES-GVDGIMVARGALIKPWIFTEIKERREWDISAV 509
>gi|50294738|ref|XP_449780.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637232|sp|Q6FJ14.1|DUS3_CANGA RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|49529094|emb|CAG62758.1| unnamed protein product [Candida glabrata]
Length = 640
Score = 229 bits (585), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 258/531 (48%), Gaps = 110/531 (20%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQ----CYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +G+ C+FVHD +++ K +I++ C VF GYCPMG CRF SSH+D+
Sbjct: 91 CTFGDNCRFVHDIPTYLEHKRPEITDSVFKTCPVFETLGYCPMGFKCRFLSSHMDKETHK 150
Query: 145 IVKEDVLKEWKNTVGNKT--VNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTD 202
+ L E+ + + + + +N + + + DL K + F KSE + + + + EN++
Sbjct: 151 L-----LGEYPSDLASASHEINHITQDQKYDLIKKRFPFSKSELVLEILDSFQEENREMH 205
Query: 203 DCCKN--QDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI-IKIKNS-----EKKK 254
+ +D + E ++ P V++ + E + D+ ++ K++ EKK
Sbjct: 206 REAEKVKEDQQDNEDEQKEKAPQ---VVQRELEAQKRRQRQKDLYLQYKDTRFFAQEKKP 262
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE- 313
+D + K +SPLTTVGNLP+RRL + GAD+T SEMA+A L++ + EWAL K HESE
Sbjct: 263 LDLRHKKIVSPLTTVGNLPYRRLMRTLGADVTYSEMALAVPLVQGTNSEWALPKAHESEY 322
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
FGVQ+ + + +K + L + + +++N GCPI+ +Y+QGSGS LL
Sbjct: 323 PGFGVQVACSKGWQASKAAEALATYIPNGISEINLNSGCPIDLLYRQGSGSALL------ 376
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+NP + +C +
Sbjct: 377 ------DNPARMIRC-------------------------------------------LN 387
Query: 432 CMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWD 489
MN VS +PITVK RTG + + I + + + + ITLHGR+R+QRYTK ADWD
Sbjct: 388 AMNYVSGDIPITVKIRTGTKEGHPIADTLVRRLVFETDVAAITLHGRSRQQRYTKVADWD 447
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
Y+ + A+ + +FM E K++ D + Q
Sbjct: 448 YVSQVAKALRQAEA---DFM------------------ESPQGKESHHDEKTRHTQFV-- 484
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGDI +Y D+ + L + P + M+ RGALIKPWIF+EI ++ D
Sbjct: 485 ----GNGDIFNYTDWYQHL-EDPEVDSCMVARGALIKPWIFEEINAQQHLD 530
>gi|145351179|ref|XP_001419962.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580195|gb|ABO98255.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 361
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 124/354 (35%), Positives = 185/354 (52%), Gaps = 105/354 (29%)
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
+K++D++GKLY++PLTTVGNLPFRR+C GADIT SEMA+A+ LLK +EWAL++RH
Sbjct: 1 RKELDFKGKLYVAPLTTVGNLPFRRVCTDLGADITVSEMAMASNLLKGDRKEWALLRRHP 60
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
SE KC +
Sbjct: 61 SE----------------KC---------------------------------------Y 65
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+CG P ++ +C +L++ ++ DF+DVN+GCPI+ + +G+GS L++ + L++V+
Sbjct: 66 GIQVCGGYPDLMARCAELIDNEVSCDFIDVNMGCPIDGVCAKGAGSSLMRDTDRLKNVVR 125
Query: 432 CMNEVSSLPITVKTRTGIHKDNN--IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
M VSS P+T+K R G D + + H+ +P+ + WGA TLHGRTREQRY++ ADW
Sbjct: 126 TMAAVSSTPVTIKLRMGYFDDPSKYVAHDIIPRAKAWGAFAATLHGRTREQRYSRLADWS 185
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
YI +CA + ++ S
Sbjct: 186 YIHRCADVAAK-----------------------------------------------SE 198
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
L GNGD+ +YEDY + + ++ MIGRGA+IKPW+ EIKE++ +DI A
Sbjct: 199 FTLIGNGDVYTYEDYNAQVADN-KVATCMIGRGAIIKPWLMTEIKEQRHWDISA 251
>gi|398366123|ref|NP_013505.4| Dus3p [Saccharomyces cerevisiae S288c]
gi|187471052|sp|A7A1S5.1|DUS3_YEAS7 RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|187608869|sp|Q06053.2|DUS3_YEAST RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|151940921|gb|EDN59303.1| dihydrouridine synthase [Saccharomyces cerevisiae YJM789]
gi|285813805|tpg|DAA09701.1| TPA: Dus3p [Saccharomyces cerevisiae S288c]
gi|392297902|gb|EIW09001.1| Dus3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 668
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK +D K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNEN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|349580097|dbj|GAA25258.1| K7_Dus3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 668
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDVSK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSFKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK +D K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNEN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|207342739|gb|EDZ70408.1| YLR401Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 668
Score = 229 bits (583), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 197/629 (31%), Positives = 286/629 (45%), Gaps = 131/629 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKI----------CKENKASKNENKDTDDCCKNQDSKVIEGREEI 219
+ DL K + F KS +I C+++ + E + T K QD V E+
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDSMKPEEEVESTPQL-KKQDPDV----EQP 250
Query: 220 NTPNTDDVIK--VQEETKSGPV-LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
P + K Q K V L + EKK +D K +SPLTTVGNLP+RR
Sbjct: 251 VAPQVEQRNKELSQHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRR 310
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQL 334
L +K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 311 LMRKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEAL 370
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 371 ANSVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC-------- 410
Query: 395 VVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDN 453
+ MN VS +PITVK RTG + +
Sbjct: 411 -----------------------------------LNAMNYVSKDIPITVKIRTGTKEGH 435
Query: 454 NIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPK 511
I + + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 436 PIAEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK 495
Query: 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
GR + R GNGD+ ++ED+ L +
Sbjct: 496 -----------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLDGN 525
Query: 572 PSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 526 ENIDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|303278930|ref|XP_003058758.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459918|gb|EEH57213.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 440
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 123/353 (34%), Positives = 180/353 (50%), Gaps = 101/353 (28%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
+++D++GKLY++PLTTVGNLPFRR+C GAD+T SEMA+A+ +LK EWAL++RH S
Sbjct: 46 RRVDFRGKLYVAPLTTVGNLPFRRVCVGLGADVTISEMAMASNVLKGDRGEWALLRRHPS 105
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E LFG Q+CG P +L +C +LL++++ DFVDVN+GCPI+ + +G+GS LL+ A
Sbjct: 106 EKLFGAQVCGGWPDLLARCGELLDDELDCDFVDVNMGCPIDGVCAKGAGSSLLRDAE--- 162
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
G+ + ++++
Sbjct: 163 ---------------------------------------------GVARMERVVRAASRS 177
Query: 433 MNEVSSLPITVKTRTGIHKD--NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
M P+T+K R G D ++ H + + + WGA +TLHGRTR+QRY++ ADW Y
Sbjct: 178 MRRA---PLTIKLRMGYDDDPSKHVAHEIVARAKSWGAHAVTLHGRTRQQRYSRAADWAY 234
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+E+CA A +
Sbjct: 235 VERCA-----------------------------------------------AAARETST 247
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
PL GNGD+ S DY + S S++ MIGRGALIKPW+ EIKE++++DI A
Sbjct: 248 PLIGNGDVFSSADYERHM-SSGSLATCMIGRGALIKPWVLTEIKERRVWDISA 299
>gi|71023677|ref|XP_762068.1| hypothetical protein UM05921.1 [Ustilago maydis 521]
gi|74699222|sp|Q4P1U2.1|DUS3_USTMA RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|46101502|gb|EAK86735.1| hypothetical protein UM05921.1 [Ustilago maydis 521]
Length = 867
Score = 228 bits (581), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 156/572 (27%), Positives = 244/572 (42%), Gaps = 176/572 (30%)
Query: 111 DISEQCYVFLQHGYCPMGIACRF--------GSSHLDE---------NGGNIVKEDV-LK 152
D S C +F G+C MG CRF G+S L + +G +V++ +
Sbjct: 273 DWSTTCPIFAVKGFCTMGWKCRFLGSHVRLVGASSLGDPLNPTGFASSGLELVRDQARMD 332
Query: 153 EWK---------------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNE 197
EW+ + +N ++ + +RK + K++ + K + +
Sbjct: 333 EWRARTRAFELSHAKQSASDADQDELNFGTSDGMKAMRKRNFPLPKTKAVLKFLETETKQ 392
Query: 198 NKDTDDCCKNQDSKVIEGREEINTPNTDDVIKV--------------------------- 230
D D I G+ I T ++ + V
Sbjct: 393 LADVDP------HGSIAGKGPIPTSVVEEAVAVSAGANGCNGHSTAPASAAAAEAEAEDD 446
Query: 231 ------------------QEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
Q T +G + D+ +I+ SEK++++W+G+LYL+PLTT GNL
Sbjct: 447 LEELENAMRNRGLHARVAQAATTNGSI---DLARIRPSEKRRLNWRGELYLAPLTTTGNL 503
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFRR+C +G+DI C EM +A L + EW+L++RHESE +FG QLCG P +L
Sbjct: 504 PFRRICTGYGSDIHCGEMGLAESFLHGNAAEWSLVRRHESERIFGTQLCGGKPDLLVPVA 563
Query: 333 QLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
+ L+ ++ +DFVD+N GCPI+ ++ +G+GS LL ++P L+K
Sbjct: 564 EALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALL------------DHPTKLSK----- 606
Query: 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGI 449
++ MN V P+T+K RTG
Sbjct: 607 --------------------------------------IVRGMNAVLGDTPLTIKLRTGT 628
Query: 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFM 509
F +W + TLHGR+R+QRY ADW YI CA +
Sbjct: 629 GAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKNDADWGYIATCA----------NTLR 678
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
+W S R+ + + P P+YGNGD+ S++DY E ++
Sbjct: 679 ESVSEWNES----------SRFADEPE----------MVPIPVYGNGDVYSWQDYYERIE 718
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ + G MI RGALIKPW+F EIKE++ +DI
Sbjct: 719 RT-HVDGEMIARGALIKPWLFTEIKERRDWDI 749
>gi|259148380|emb|CAY81627.1| Dus3p [Saccharomyces cerevisiae EC1118]
Length = 668
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 197/629 (31%), Positives = 286/629 (45%), Gaps = 131/629 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G A KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGANKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKI----------CKENKASKNENKDTDDCCKNQDSKVIEGREEI 219
+ DL K + F KS +I C+++ + E + T K QD V E+
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDSMKPEEEVESTPQL-KKQDPDV----EQP 250
Query: 220 NTPNTDDVIK--VQEETKSGPV-LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
P + K Q K V L + EKK +D K +SPLTTVGNLP+RR
Sbjct: 251 VAPQVEQRNKELSQHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRR 310
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQL 334
L +K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 311 LMRKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEAL 370
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 371 ANSVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC-------- 410
Query: 395 VVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDN 453
+ MN VS +PITVK RT + +
Sbjct: 411 -----------------------------------LNAMNYVSKDIPITVKIRTSTKEGH 435
Query: 454 NIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPK 511
I + + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 436 PIAEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK 495
Query: 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
GR + R GNGD+ ++ED+ L +
Sbjct: 496 -----------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLDGN 525
Query: 572 PSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 526 ENIDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|384483225|gb|EIE75405.1| hypothetical protein RO3G_00109 [Rhizopus delemar RA 99-880]
Length = 585
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 181/589 (30%), Positives = 260/589 (44%), Gaps = 175/589 (29%)
Query: 39 EVEDDGTAKKKFKKNKQVLKGQNKA-RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKF 97
E E T + K +KN +G NK RG + ED K ++++C EKC+F
Sbjct: 37 EAEGGATFENKKQKN---ARGANKGQRGKKRI---EDS-IRICKHVAVDESCPIIEKCRF 89
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
HD ++ +KP DI +C F G CP G CR+ +H+DEN +V E + E KN
Sbjct: 90 SHDLEAYLAAKPADIGTRCVQFDLFGKCPYGYKCRYLGAHIDENKKLVVNEAKVAE-KNV 148
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEK---ICKENKASKNENKDTD------------ 202
T N ++++ + L + Y F +++ I KE + KD +
Sbjct: 149 Y---TTNGISHKTQVALNRSRYEFPRTKAYMAIVKEQIEDEQAMKDANTAKRKLGAEAAI 205
Query: 203 -DCCKNQDSKVIE-------GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
+ K Q ++ E E + V +EE GP I KK
Sbjct: 206 KEAVKKQKAEEEESEDEFFDAPSEFTNVTIEPVETKKEEKPIGP--------IDLKYKKI 257
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
ID++ K YL+PLTTVGNLPFRR+CK++G DITC EMA+A + L++ +SE
Sbjct: 258 IDFRDKTYLAPLTTVGNLPFRRICKEYGVDITCGEMALA----------FNLLQGQQSE- 306
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ LTK + ++FG+Q
Sbjct: 307 -----------WALTK---------------------------------RHKSEDIFGIQ 322
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+CG+ +TK ++L ++ VDF+D+N+GCPI+ ++KQ
Sbjct: 323 ICGSKVEQVTKACEVLNNEVDVDFIDLNMGCPIDLVFKQ--------------------- 361
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
V+ +PIT K R GI KDN MP
Sbjct: 362 TVTDIPITAKFRMGI-KDN------MP--------------------------------- 381
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +PK + LHGR+R QRYTK+ADW+YI L S P YG
Sbjct: 382 ---------VADRVVPKLEE------LLHGRSRAQRYTKKADWEYIGAMKNLTSSMPFYG 426
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
NGDI+S++DY + K + GVMIGRGALIKPWIF EIK ++ +DI A
Sbjct: 427 NGDIMSFDDYN-TFKNISGVDGVMIGRGALIKPWIFDEIKNQRDYDISA 474
>gi|213407258|ref|XP_002174400.1| tRNA dihydrouridine synthase Dus3 [Schizosaccharomyces japonicus
yFS275]
gi|212002447|gb|EEB08107.1| tRNA dihydrouridine synthase Dus3 [Schizosaccharomyces japonicus
yFS275]
Length = 617
Score = 228 bits (580), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 164/581 (28%), Positives = 257/581 (44%), Gaps = 143/581 (24%)
Query: 69 VTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMG 128
+ + ++ CP + +L + C YG +C+F HD ++ K DI + C +F ++G CP G
Sbjct: 16 IVREDNALCPRI---SLGEECPYGAECRFPHDVEAYLAQKKPDIGKVCTLFDKYGRCPAG 72
Query: 129 IACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEK 186
CR+ S H+ DE+G +++ + K N + EV++ LR + KSE+
Sbjct: 73 FKCRWLSGHVREDEDGNHVL----VTRPDAKAPTKVTNSMNKEVQKKLRTKQLDLSKSEE 128
Query: 187 ICKE--NKASKNENKDTDDCCKNQDSK-----------VIEGREEINTPNTDDVIKVQEE 233
+ +K+++K +D + Q +K V EE T ++ V +++
Sbjct: 129 VIALVLGPMNKDDSKQSDRNSERQAAKKEKKKEIEEKGVAASGEEAVTSVSEAVTSGEQK 188
Query: 234 TKSG---------------PVLDT--------DIIKIKNSEKKKIDWQGKLYLSPLTTVG 270
S P DT ++ ++ EKK IDW+ ++ L+PLTTVG
Sbjct: 189 AASSTEQAAPTATEPPTAQPATDTSFEGRAFLELPTLRPQEKKVIDWRNRMVLAPLTTVG 248
Query: 271 NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE---------DLFGVQLC 321
N FR+LC +GAD SEMA+ L++ EWAL++ ESE +FG+QL
Sbjct: 249 NPAFRQLCASFGADTFYSEMALCYPLMQGHQPEWALVRGVESERQTMKTGRRGIFGIQLA 308
Query: 322 GNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K Q+L E +DF+D+N GCPI+ +Y+QG+GS LL
Sbjct: 309 CGKLWQGVKTAQVLSEYCDGLDFLDLNCGCPIDLVYRQGAGSALLDNH------------ 356
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
T+L+ +D + SLP
Sbjct: 357 ------TRLIRSLQGIDTIS------------------------------------GSLP 374
Query: 441 ITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
TVK R G D+ I M + F + S +TLHGR+R+QRY+K ADWDY+ +CA
Sbjct: 375 TTVKLRMGCRDDHPIAKRLMTRIFHETNVSAVTLHGRSRQQRYSKLADWDYVRQCATEIR 434
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
N + F R QR + GNGD
Sbjct: 435 TLNEALEEKPDAF------------PMRNQRMA-------------------VIGNGDCF 463
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+Y+D+ + ++ + VMI RGAL+KPWIF+EI+ ++ D
Sbjct: 464 TYKDWYDGMET--GVDTVMIARGALVKPWIFEEIEARQSID 502
>gi|256269134|gb|EEU04469.1| Dus3p [Saccharomyces cerevisiae JAY291]
Length = 668
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 190/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK ++ K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLNLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNDN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|354546715|emb|CCE43447.1| hypothetical protein CPAR2_210910 [Candida parapsilosis]
Length = 615
Score = 227 bits (578), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 177/608 (29%), Positives = 274/608 (45%), Gaps = 145/608 (23%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEEL-EVEDDGTAKKKFKKNKQVLKGQNKA 63
G+A IK EFIV V+ ++ ++ + + + E DG KK K+ + GQN
Sbjct: 28 GIAAIKPEFIVAKPVQATNVVEYHDDEAEGGDRMAEGAADGQQNKKGKRKR----GQNHG 83
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQTCKYGE-KCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + + +D CP + D ++C GE KCK+ HD +++SK EDI C VF
Sbjct: 84 RD---LKQKKDTIKLCPSIIDPDDSKSCFLGEEKCKYSHDLQSYLESKQEDIDGVCPVFE 140
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYCP G+ CR+ SH D+ +++ D+ K + N VN + E + L+K Y
Sbjct: 141 ALGYCPAGMKCRWLKSHYDKETNKLIR-DLAKLDLASKTNFEVNAIDKEAKFALQKKKYE 199
Query: 181 FEKSEKI-----CKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK 235
F+ + + K ++ E KD + Q K+
Sbjct: 200 FKIATPVINFLDSKIQNETREERKDNEASYVEQPFKI----------------------- 236
Query: 236 SGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
SEKK+I+ +SPLTTVGNLP+RRL K GAD+T SEMA++
Sbjct: 237 --------------SEKKRINLNRAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSIP 282
Query: 296 LLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIE 353
L++ EWAL K H SE FGVQ+ + + K ++ + E V +++N GCPI+
Sbjct: 283 LVQGHNPEWALPKAHVSEYPGFGVQIASSKLWSAAKASEAIYENTNHVSELNLNCGCPID 342
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
+Y+QG GS LL + P L + + +
Sbjct: 343 LLYRQGQGSALL------------DQPPRLLRLVKAM----------------------- 367
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLIT 472
+ SG +P+T+K RTG+ ++ N + + + + IT
Sbjct: 368 NASSG-------------------DIPVTIKIRTGVKENKNTAKQLVDRVLSETQVAAIT 408
Query: 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532
LHGR+R+QRY+K+ADW YI + ++ +DW A RE+
Sbjct: 409 LHGRSRQQRYSKEADWAYISEVGKVV--------------KDWNAK--------REE--- 443
Query: 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+K A +P GNGD+ S+ED+ + + I VM+ RGALIKPWIF+E
Sbjct: 444 --------DKDASDTTPTWFVGNGDVYSHEDWYNHV-NTEGIDSVMVARGALIKPWIFEE 494
Query: 593 IKEKKLFD 600
++ ++ D
Sbjct: 495 VEAQQYLD 502
>gi|241950946|ref|XP_002418195.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
gi|223641534|emb|CAX43495.1| tRNA-dihydrouridine synthase, putative [Candida dubliniensis CD36]
Length = 613
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 183/603 (30%), Positives = 272/603 (45%), Gaps = 137/603 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK E++V S V D E E + +NK+ KGQN R
Sbjct: 29 GIAAIKAEYLV----PTSSFTVVEYDDD------EAESGNREGESKPRNKKKQKGQNHKR 78
Query: 65 GPTFVTKPEDC--YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQ 121
+ + +D CP L D ++ C+ G +KC+F HD +++SKP DI C VF
Sbjct: 79 D---LKQKKDIIKLCPSLIDPEDDRICQVGSDKCRFHHDIASYLESKPHDIDGICPVFEA 135
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
GYCP GI CR+ SH + ++K D+ K N VN + + + +++K Y F
Sbjct: 136 LGYCPTGIKCRWLKSHYNPETSKLIK-DLEKTEIAKTTNYEVNHIDKDQKMEMQKKKYFF 194
Query: 182 EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
+ S+ + K DS++ N +++ K +EE K
Sbjct: 195 KISQPVIK-----------------YLDSRI---------QNDENLAKQKEERKDNEASY 228
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
+ SEKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 229 VEA-PFTISEKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQGHN 287
Query: 302 QEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
EWAL K H SE FGVQ+ + + + V +++N GCPI+ +YKQG
Sbjct: 288 PEWALPKAHISEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQG 347
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
GS LL + + L G N + SG
Sbjct: 348 QGSALLDQPSKLLRILSGMN-----------------------------------ASSG- 371
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG-ASLITLHGRTR 478
+P+TVK RTGI + N N + + D G A+ ITLHGR+R
Sbjct: 372 ------------------DIPVTVKIRTGIKEGKNTAVNLVSRVLDEGNAAAITLHGRSR 413
Query: 479 EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA-DW 537
+QRY+K+ADW+YI + + ++W +Q+ K+A D
Sbjct: 414 QQRYSKEADWNYIAEVGTVV--------------KNW----------NEQQKEDKEARDR 449
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
D P GNGD+ S+ED+ + + + I VM+ RGALIKPWIF+E++ ++
Sbjct: 450 D----------PVYFVGNGDVYSHEDWYKHV-NTEGIDSVMVARGALIKPWIFEEVEAQQ 498
Query: 598 LFD 600
D
Sbjct: 499 YLD 501
>gi|365764190|gb|EHN05715.1| Dus3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 668
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 196/629 (31%), Positives = 285/629 (45%), Gaps = 131/629 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKI----------CKENKASKNENKDTDDCCKNQDSKVIEGREEI 219
+ DL K + F KS +I C+++ + E + T K QD V E+
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDSMKPEEEVESTPQL-KKQDPDV----EQP 250
Query: 220 NTPNTDDVIK--VQEETKSGPV-LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
P + K Q K V L + EKK +D K +SPLTTVGNLP+RR
Sbjct: 251 VAPQVEQRNKELSQHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRR 310
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQL 334
L +K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 311 LMRKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEAL 370
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 371 ANSVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC-------- 410
Query: 395 VVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDN 453
+ MN VS +PITVK RT + +
Sbjct: 411 -----------------------------------LNAMNYVSKDIPITVKIRTSTKEGH 435
Query: 454 NIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPK 511
I + + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 436 PIAEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK 495
Query: 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
GR + R GNGD+ ++ED+ L +
Sbjct: 496 -----------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLDGN 525
Query: 572 PSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 526 ENIDSVMVARGALIKPWIFEEVESQQYLD 554
>gi|255714134|ref|XP_002553349.1| KLTH0D14696p [Lachancea thermotolerans]
gi|238934729|emb|CAR22911.1| KLTH0D14696p [Lachancea thermotolerans CBS 6340]
Length = 667
Score = 226 bits (576), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 185/626 (29%), Positives = 276/626 (44%), Gaps = 119/626 (19%)
Query: 2 DASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQN 61
D+ G+A IK E+IV S+ ++ + EE V D + KK KQ +GQN
Sbjct: 23 DSRGIAHIKPEYIV-----TASVTDTRTSEPQHEEEEPVSDRISTGAAGKKGKQKKRGQN 77
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM-KSKPEDIS---EQCY 117
K R V + + + Q C +G++C++VHD + ++ KPE S C
Sbjct: 78 KNRNNIQVKEQHQLCSKLVLGTGNGQECPFGDQCRYVHDIDEYLAHKKPETESAYFSSCP 137
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
VF G CPMG CRF SSH D + + + K N+ VN +A + + DL K
Sbjct: 138 VFETLGRCPMGFKCRFLSSHYDSATKQLQSKPEAETQKLYDANREVNHIAADKKLDLIKR 197
Query: 178 TYNFEKSEKI-----------------CKENKASKNENKDTDDCCKNQDSK--VIEGREE 218
+ FEKSE + ++ ASK D + S+ V EG
Sbjct: 198 RFPFEKSEHVLEIIDAIQQEYRDGMNEAQQAHASKKAKSDESAAPAGESSEAPVKEGPVA 257
Query: 219 INTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
+ ++ + + + L + EKK +D K +SPLTTVGNLP+RRL
Sbjct: 258 PQVAQRERELEEKRQRQKDLFLQYKDTRFFAQEKKPLDLHNKKIVSPLTTVGNLPYRRLM 317
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL-FGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 318 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHVSETPGFGVQIACSKAWQAAKAAEALAA 377
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
V +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 378 NVQDVSEINLNSGCPIDLLYRQGSGSALL------------DNPARMFRC---------- 415
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNI 455
+ M+ VS +P+TVK RTG + +
Sbjct: 416 ---------------------------------LNSMSYVSGDIPVTVKIRTGTKDGHPM 442
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
+ + + + ITLHGRTR+QRYT+ ADWDYI K A + + + R+
Sbjct: 443 AEGLVRRLVSETDVAAITLHGRTRQQRYTRNADWDYISKVASTLREAEHEVEEKDKERRE 502
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
G+ R Q GNGD+ ++ED+ + ++ +I
Sbjct: 503 ---------GKLRTQ----------------------FVGNGDVNNFEDWYKHVEDE-NI 530
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFD 600
VM+ RGAL+KPWIF+E++ ++ D
Sbjct: 531 DSVMVARGALVKPWIFEEVEAQQHLD 556
>gi|343427438|emb|CBQ70965.1| related to DUS3-member of dihydrouridine synthase family
[Sporisorium reilianum SRZ2]
Length = 852
Score = 225 bits (574), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 188/364 (51%), Gaps = 91/364 (25%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
TD+ +I+ SEK++++W+G+LYL+PLTT GNLPFRR+C +G+DI C EM +A L +
Sbjct: 458 TDLARIRPSEKRRLNWKGELYLAPLTTTGNLPFRRICTSFGSDIHCGEMGLAESFLHGNA 517
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQG 359
EW+L++RHESE +FG+QLCG P +L + L+ ++ +DFVDVN GCPI+ +Y +G
Sbjct: 518 SEWSLVRRHESERIFGMQLCGGKPELLVPVAEALKAEVGDGLDFVDVNCGCPIDLVYNKG 577
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSG 418
+GS LL ++P L K +V ++ LG P+ + G+G+
Sbjct: 578 AGSALL------------DHPSKLGK---------IVRGMNAVLGDTPLTIKLRTGTGAK 616
Query: 419 LLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRT 477
L H + + +WGA+ TLHGR+
Sbjct: 617 L-----------------------------------TTHKLFARAQTEWGAAAATLHGRS 641
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRY A+W YI CAQ RD+ N P D
Sbjct: 642 RKQRYKNDANWGYIATCAQAL-RDSVRAWNEDPAHAD----------------------- 677
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P P+YGNGD+ S++DY E L+++ + G M+ RGALIKPW+F EIK+++
Sbjct: 678 ------EPEMVPIPVYGNGDVYSWQDYYERLERT-GVDGEMLARGALIKPWLFTEIKQRR 730
Query: 598 LFDI 601
+DI
Sbjct: 731 DWDI 734
>gi|374108153|gb|AEY97060.1| FAER070Cp [Ashbya gossypii FDAG1]
Length = 647
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 181/611 (29%), Positives = 275/611 (45%), Gaps = 121/611 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA++K E++V ++ + E +D+ E VE +G +KK KK +GQNK R
Sbjct: 29 GVAQLKPEYVVAGAAQLRAAE----SDEELTSERMVEPEGGTRKKSKK----ARGQNKNR 80
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS----EQCYVFL 120
K E CP L + C +G +C+++HD +++ K +I C VF
Sbjct: 81 D-NRQAKEEHQLCPRLAQGNAD-ACAFGAQCRYLHDVRTYLEHKTAEIECPQFTGCPVFA 138
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
G CPMG CRF SSH + + + K N VN +A++ + DL K
Sbjct: 139 ATGRCPMGFKCRFLSSHCNMETLELATTPEDERAKLWSANHEVNHIASDRKLDLVKRRAP 198
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
F +SE + + A + E +D + Q + P V + +E+ +
Sbjct: 199 FPRSEHVLEIIDAIQQEFRD-----EMQGAAAAPEGAVAEVPQ---VQQREEQLSNKRAR 250
Query: 241 DTDI------IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
++ + EKK +D K +SPLTTVGNLPFRRL ++ GAD+T SEMA+A
Sbjct: 251 QRELYAQYHETRYFAQEKKPLDLHHKKIVSPLTTVGNLPFRRLMRQLGADVTYSEMALAV 310
Query: 295 ELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL--GCP 351
L++ + EWAL K H SE FGVQL + P+ K + L + + ++NL GCP
Sbjct: 311 PLIQGTNSEWALPKAHCSELPGFGVQLACSKPWQAAKAAEALADNVGDGLSEINLNSGCP 370
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ +Y+QGSGS LL +NP + +C
Sbjct: 371 IDLLYRQGSGSALL------------DNPARMIRC------------------------- 393
Query: 412 KQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKF-RDWGAS 469
+ MN VS +P++VK RTG + I + + +
Sbjct: 394 ------------------LNAMNYVSKDVPVSVKLRTGTRDGHPIALGLCKRLVMETDVA 435
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGRTR+QRYT+ ADWDY+ + A + + ++ + L G+ R Q
Sbjct: 436 AITLHGRTRQQRYTRSADWDYVGQVA-------DALRSYET---ERAEKLKDREGKLRIQ 485
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD ++ED+ L+ ++ VM+ RGALIKPWI
Sbjct: 486 ----------------------FVGNGDCNNWEDWYRHLENE-NVDSVMVARGALIKPWI 522
Query: 590 FQEIKEKKLFD 600
F+E+ ++ D
Sbjct: 523 FEEVDARQYID 533
>gi|66801291|ref|XP_629571.1| CCCH-type zinc finger-containing protein [Dictyostelium discoideum
AX4]
gi|74850928|sp|Q54CU9.1|DUS3L_DICDI RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like;
AltName: Full=tRNA-dihydrouridine synthase 3-like
gi|60462949|gb|EAL61146.1| CCCH-type zinc finger-containing protein [Dictyostelium discoideum
AX4]
Length = 671
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 179/357 (50%), Gaps = 106/357 (29%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+K +EKK+I+++ +L L+PLTTVGNLPFRR+CK+ GADIT EMA+ T+LL+ + E AL
Sbjct: 312 LKANEKKRINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELAL 371
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+KRH ED FGVQ+CG+ KC + +E ++ DFVD+N GCPI+ + G+G+ L++
Sbjct: 372 LKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALME 431
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
R K QLL +G S L
Sbjct: 432 RPK---------------KVEQLL----------------------RGISSSL------- 447
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
S P T+K R G +D H +P +WGA +TLHGR+R QRY++ A
Sbjct: 448 -----------SCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLA 496
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
+WDY+++C+++ S
Sbjct: 497 NWDYVKQCSEVSS----------------------------------------------- 509
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
PL GNGDI +Y+D ++ S +S +MI RGALIKPWIF EIKEK+ +DI A
Sbjct: 510 ---IPLIGNGDIYNYQDVV-NIYDSSKVSSIMIARGALIKPWIFTEIKEKREWDISA 562
>gi|448088717|ref|XP_004196614.1| Piso0_003836 [Millerozyma farinosa CBS 7064]
gi|448092873|ref|XP_004197645.1| Piso0_003836 [Millerozyma farinosa CBS 7064]
gi|359378036|emb|CCE84295.1| Piso0_003836 [Millerozyma farinosa CBS 7064]
gi|359379067|emb|CCE83264.1| Piso0_003836 [Millerozyma farinosa CBS 7064]
Length = 624
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 185/608 (30%), Positives = 281/608 (46%), Gaps = 133/608 (21%)
Query: 3 ASGVAKIKQEFIVE-DHVKVLSIECVNETDKRKLEELEVED--DGTAKKKFKKNKQVLKG 59
++G+A IK EFIVE ++KV D+ +E E+ D G + K+ +K+ +G
Sbjct: 33 SNGIAPIKPEFIVEKQNIKV---------DEYNDDEAEMGDRHGGDSSKENTGSKKKKRG 83
Query: 60 QNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEK-CKFVHDKNVFMKSKPEDISEQCYV 118
QNK R E C L D + CK+G K C+F HD + ++K+KP+DI C V
Sbjct: 84 QNKKRD-LKQEHEETRLCASLIDPDSPRECKFGSKGCRFTHDIDEYLKAKPDDIEGTCPV 142
Query: 119 FLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHT 178
F GYCP+G+ CR+ SH D +VK D+ K K N VN + +V+ L+K T
Sbjct: 143 FAAIGYCPVGLKCRWLHSHFDVETKKLVK-DLEKMNKAEKENYEVNKIPGDVKYKLQKKT 201
Query: 179 YNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGP 238
Y F +S + D +N+D ++ + +EE K
Sbjct: 202 YEFTQSSLVIPY----------IDSLVQNED----------------NLERKREEAKEAA 235
Query: 239 VLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK 298
T+ K +EKK+++ +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 236 ATFTEQ-PYKIAEKKRLNLSRAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQ 294
Query: 299 SSPQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
+ EWAL K H SE FGVQ+ + + + +E V V++N GCPI+ +Y
Sbjct: 295 GTNAEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYKEGSHVSEVNLNCGCPIDLLY 354
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
+QG GS L+++ P L + + + +
Sbjct: 355 RQGQGSALMEQ------------PARLVRILKAM-----------------------NAS 379
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHG 475
SG LP+TVK RTG + N + + ++ + +TLHG
Sbjct: 380 SG-------------------DLPVTVKIRTGSKDNKNTAKTLVDRLLKENDIAAVTLHG 420
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 535
R+R+QRYTK+ADW YI + + + N KQ
Sbjct: 421 RSRQQRYTKEADWSYIGEVGSVVKQWNE----------------------------EKQE 452
Query: 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D D + GNGD+ ++ED+ ++ +P I VM+ RGALIKPWIF+E++
Sbjct: 453 DKDRSDLPDTF-----FIGNGDVFTHEDWYNAV-NTPGIDSVMVARGALIKPWIFEEVEA 506
Query: 596 KKLFDIYA 603
++ D A
Sbjct: 507 QQYLDKSA 514
>gi|45190676|ref|NP_984930.1| AER070Cp [Ashbya gossypii ATCC 10895]
gi|74693589|sp|Q757E3.1|DUS3_ASHGO RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|44983655|gb|AAS52754.1| AER070Cp [Ashbya gossypii ATCC 10895]
Length = 647
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 181/611 (29%), Positives = 275/611 (45%), Gaps = 121/611 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA++K E++V ++ + E +D+ E VE +G +KK KK +GQNK R
Sbjct: 29 GVAQLKPEYVVAGAAQLRAAE----SDEELTSERMVEPEGGTRKKSKK----ARGQNKNR 80
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS----EQCYVFL 120
K E CP L + C +G +C+++HD +++ K +I C VF
Sbjct: 81 D-NRQAKEEHQLCPRLAQGNAD-ACAFGAQCRYLHDVRTYLEHKTAEIECPQFTGCPVFA 138
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
G CPMG CRF SSH + + + K N VN +A++ + DL K
Sbjct: 139 ATGRCPMGFKCRFLSSHCNMETLELATTPEDERAKLWSVNHEVNHIASDRKLDLVKRRAP 198
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
F +SE + + A + E +D + Q + P V + +E+ +
Sbjct: 199 FPRSEHVLEIIDAIQQEFRD-----EMQGAAAAPEGAVAEVPQ---VQQREEQLSNKRAR 250
Query: 241 DTDI------IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
++ + EKK +D K +SPLTTVGNLPFRRL ++ GAD+T SEMA+A
Sbjct: 251 QRELYAQYHETRYFAQEKKPLDLHHKKIVSPLTTVGNLPFRRLMRQLGADVTYSEMALAV 310
Query: 295 ELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL--GCP 351
L++ + EWAL K H SE FGVQL + P+ K + L + + ++NL GCP
Sbjct: 311 PLIQGTNSEWALPKAHCSELPGFGVQLACSKPWQAAKAAEALADNVGDGLSEINLNSGCP 370
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ +Y+QGSGS LL +NP + +C
Sbjct: 371 IDLLYRQGSGSALL------------DNPARMIRC------------------------- 393
Query: 412 KQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKF-RDWGAS 469
+ MN VS +P++VK RTG + I + + +
Sbjct: 394 ------------------LNAMNYVSKDVPVSVKLRTGTRDGHPIALGLCKRLVMETDVA 435
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGRTR+QRYT+ ADWDY+ + A + + ++ + L G+ R Q
Sbjct: 436 AITLHGRTRQQRYTRSADWDYVGQVA-------DALRSYET---ERAEKLKDREGKLRIQ 485
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD ++ED+ L+ ++ VM+ RGALIKPWI
Sbjct: 486 ----------------------FVGNGDCNNWEDWYRHLENE-NVDSVMVARGALIKPWI 522
Query: 590 FQEIKEKKLFD 600
F+E+ ++ D
Sbjct: 523 FEEVDARQYID 533
>gi|126135514|ref|XP_001384281.1| dihydrouridine synthase of tRNA [Scheffersomyces stipitis CBS 6054]
gi|187471049|sp|A3LUK5.1|DUS3_PICST RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|126091479|gb|ABN66252.1| dihydrouridine synthase of tRNA [Scheffersomyces stipitis CBS 6054]
Length = 613
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 248/528 (46%), Gaps = 119/528 (22%)
Query: 77 CPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
C L D +TC YG E+C+ H+ ++ SKP DI C VF GYCP G+ CR+
Sbjct: 88 CTSLLDPDNIKTCAYGPEQCRSTHNVEEYLASKPVDIEGICPVFRAIGYCPAGLKCRWLQ 147
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASK 195
SH D+ ++K+ E N VN +++E R LRK Y+F + K+ +
Sbjct: 148 SHYDKETRKLIKDLGRTEASKIELNYEVNNVSHEARGKLRKKQYDFAIAGKVIE------ 201
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
DS V N +++ +E+ K+ D K +EKK++
Sbjct: 202 -----------YIDSTV---------QNDENIANAKEQRKNNEATYVDA-PYKIAEKKRL 240
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-D 314
D++ +SPLTTVGNLP+RRL KK GADIT SEMA++ LL+++ EWAL K H +E
Sbjct: 241 DFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAEWALPKAHRTEYP 300
Query: 315 LFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+GVQ+ + + K +++ E V +++N GCPI+ +Y+QG GS LL++
Sbjct: 301 GYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQGSALLEQ------ 354
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
P L + + + + SG
Sbjct: 355 ------PARLVRILKAM-----------------------NASSG--------------- 370
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYIE 492
+P+TVK RTG ++ N + + + + ITLHGR+R+QRYTK+ADW+YI
Sbjct: 371 ----DIPVTVKIRTGSKENKNTAKTLVERLLAENDVAAITLHGRSRQQRYTKEADWNYIA 426
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ Q+ + N+ + E + ++ D C
Sbjct: 427 EVGQVVQQWND---------------------KKEENKDSR----DTQRTC--------F 453
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD+ S+ D+ ++ + I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 454 VGNGDVFSHVDWYNAV-NTDGIDSVMVARGALIKPWIFEEVEAQQYLD 500
>gi|170095681|ref|XP_001879061.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646365|gb|EDR10611.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 632
Score = 221 bits (564), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 159/575 (27%), Positives = 252/575 (43%), Gaps = 163/575 (28%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPED--------ISEQ------------------------- 115
C++G+ C+F HD + ++ +KP D ISE+
Sbjct: 41 CEFGDGCRFTHDVDAYLAAKPADLRVPSVDEISEEPPFNVRTLDGASATPHPKYPSLDMS 100
Query: 116 --CYVFLQHGYCPMGIACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
C VF + G C G+ CRF H+ DE G ++ D K+ ++ + VN + E +
Sbjct: 101 TVCPVFAETGECRYGLKCRFLGGHVRTDEEGNVVLLGDEDKKARSALTAHEVNFIGPEAQ 160
Query: 172 QDLRKHTYNFEKSEKICKE-NKASKNENKD----------TDDCCKNQDSKVIEGREEIN 220
+ LR Y F +++ KE A E+K ++ ++ + + + ++
Sbjct: 161 KLLRTKKYGFPIAKEYLKELQDAEAKESKPKPVPDEKSVVVEEPVQDMEVDLDAQQPQLE 220
Query: 221 TPNTDDVIKVQEETKSG-----PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFR 275
P ++I ET++G D+ + I+ +EKK++ W GK YL+PLTTV
Sbjct: 221 KPTVQEII----ETRTGTDEVMSAQDSPDVSIRFAEKKRLHWAGKTYLAPLTTV------ 270
Query: 276 RLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL 335
GN P+ + L
Sbjct: 271 ----------------------------------------------GNLPF------RRL 278
Query: 336 EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEE 392
Q+ + +G F+ L++R ++FGVQ+ GN P L +++ +
Sbjct: 279 CVQLGAEITCGEMGLANSFLAGSKEEWSLVRRHPSESIFGVQVAGNKPANLVPTAEVIAK 338
Query: 393 QMV--VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VSSLPITVKTRTGI 449
+ +DFVDVN GCPI+ +++ GSGS LL L ++ MN+ + +P+TVK RTG+
Sbjct: 339 ECAGGIDFVDVNCGCPIDLVFRTGSGSALLDTVGKLGKILIGMNKALGEIPVTVKLRTGV 398
Query: 450 HKDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNF 508
N H MP+ +W A ITLHGRTR+QRYTK ADWDYI++C +
Sbjct: 399 KDGKNTAHKLMPRLSTEWNAGCITLHGRTRQQRYTKLADWDYIKECVRAVR--------- 449
Query: 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
++AD D P P++G GD S DY ++
Sbjct: 450 -----------------------AQEADEDL--------PPVPIFGGGDCFSSYDYWTNV 478
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + G+M+GRGALIKPWIF EIKE++ +DI A
Sbjct: 479 ENT-GVDGIMVGRGALIKPWIFTEIKERREWDISA 512
>gi|358056693|dbj|GAA97356.1| hypothetical protein E5Q_04034 [Mixia osmundae IAM 14324]
Length = 727
Score = 221 bits (563), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 154/564 (27%), Positives = 253/564 (44%), Gaps = 164/564 (29%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISE----------QCYVFLQHGYCPMGIACRFGSSHL 138
C+ G+ C++ HD ++ +K D+S C + GYC G+ CR+ S+H
Sbjct: 162 CEKGDSCRYSHDLKGYLDAKEADLSTLDSSHGPTITSCPSYEALGYCIAGLKCRWLSTHT 221
Query: 139 DENG--------GNIVKEDVLK------------EWKNTVGNKTVNML----------AN 168
D++G G +K+D K + + +G K +++L +
Sbjct: 222 DQSGDGEGFQGLGFTIKQDDAKIRAALSEAFPNIDLPDVIGQKELDLLTACKGERNVVST 281
Query: 169 EVRQDLRKHTYNFEKSE----KICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT 224
E+++D+++ +S+ I E +A + K QDS + TP++
Sbjct: 282 ELQRDIKQGKMELPQSDAYLTSIGAETQAMRMAPKPHKGKGTQQDSPAM-------TPHS 334
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD 284
+ V+++ P DT + + +EKK++D++ + YL+PLTTVGNLPFRRLC +G+D
Sbjct: 335 ESVVEIH------PDADTPDVPSRPAEKKRLDYRDQFYLAPLTTVGNLPFRRLCGTYGSD 388
Query: 285 ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ-MAVDF 343
I C EM +A + L + EW L++RH SE FG+Q+ GN P VL ++L + ++DF
Sbjct: 389 IHCGEMGLAYDYLTGNATEWTLVRRHPSERKFGIQIAGNKPNVLVSAAEVLAKTCPSLDF 448
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN------PYVLTKCTQLLEEQMVVD 397
VDVN GCPI+ ++ +G+GS LL++A G L G N P + T + E +V
Sbjct: 449 VDVNCGCPIDLVFNRGAGSALLEKAGQLGKSLIGMNRVLGDIPVTIKLRTGIKENNLVA- 507
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
L++RA NE +T+ R
Sbjct: 508 -------------------HKLVRRAQ---------NEWGVGAVTIHGR----------- 528
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
TR QRY+K A++DYI++C + RD
Sbjct: 529 -------------------TRHQRYSKLANYDYIKRC----------VDALREASRDEDL 559
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577
+I P+ GNGD+ + Y E+L+++ + +
Sbjct: 560 PVI------------------------------PILGNGDVYDHRTYYENLEQT-GVDSI 588
Query: 578 MIGRGALIKPWIFQEIKEKKLFDI 601
M+ RGALIKPWIF E++E++ +DI
Sbjct: 589 MVARGALIKPWIFTELRERRDWDI 612
>gi|119494964|ref|XP_001264280.1| tRNA dihydrouridine synthase, putative [Neosartorya fischeri NRRL
181]
gi|187471056|sp|A1D1U0.1|DUS3_NEOFI RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|119412442|gb|EAW22383.1| tRNA dihydrouridine synthase, putative [Neosartorya fischeri NRRL
181]
Length = 726
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 192/646 (29%), Positives = 292/646 (45%), Gaps = 134/646 (20%)
Query: 5 GVAKIKQEFIVEDHVK-------VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVL 57
GVA IK EF+V+ + V+S+ + + +E E E +K K+
Sbjct: 58 GVAPIKAEFLVQKSARSQPVEESVVSLSADDAAEAAHYQEREGE---------QKGKKRA 108
Query: 58 KGQNKARGPTFVTKPEDC--YCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDI 112
GQNK R + ED CP S + CK+GEKC+F HD ++K K ED+
Sbjct: 109 SGQNKGRD---FGRSEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDL 165
Query: 113 SE---QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL----KEWKNTVG------ 159
+ C ++ G CP G CR SH+ E + +++++ +E K T
Sbjct: 166 TTFGGICPIWDAKGRCPYGFKCRLVRSHMTERDTSDGRKELILLEDEERKKTARPVVPYA 225
Query: 160 --NKTVNMLANEVRQDL-RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE-- 214
+ VN+++NE + + R+ T + +K SK KN + +E
Sbjct: 226 SEDGLVNIVSNEDKIAVARRKTTTPRSDAYLTWLDKTSKA-------LEKNLHGRHLEEG 278
Query: 215 GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLP 273
G ++ T D + EE ++ V + SEK++I + + L+PLTT GNLP
Sbjct: 279 GADKGAGAQTKDQV---EENRAAYVEPPFL----PSEKRRIYFGPETPALAPLTTQGNLP 331
Query: 274 FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQ 333
FRRLC G T SEMA+ L++ EWAL+K HESE L P ++
Sbjct: 332 FRRLCIDHGCQFTYSEMAMGMSLIQGQKSEWALMKAHESEAL---------PPTISSTAD 382
Query: 334 LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL-FGVQLCGNNPYVLTKCTQLLEE 392
+++ G +L FG Q+ GN P+ K T+LL
Sbjct: 383 VVQ--------------------------GYDNSKDLKFGAQIAGNKPWHAIKATELLGR 416
Query: 393 QMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL-PITVKTRTGIH 450
+ +D+N GCPI+ ++++G+GS LL + L+ ++ MN VS + PITVK RTG
Sbjct: 417 LTPNLRVIDLNCGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGT- 475
Query: 451 KDNN-----IIHNF--------MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+DN+ +I M G + ITLHGR+R+QRYTK ADW YI +CA L
Sbjct: 476 RDNSPNATKLIERLVLGGHESSMLNIGPPGVAAITLHGRSRQQRYTKSADWSYIAECAAL 535
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
R N + R+ ++ G+ GNGD
Sbjct: 536 IKRLNEKKDDVTDTVREPDERMLPNGGKVF------------------------FLGNGD 571
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 572 CYSHHDYDDHINNA-GVDAVMVGRGAIIKPWVFEEIQAGQYLDKSA 616
>gi|367052429|ref|XP_003656593.1| hypothetical protein THITE_2121449 [Thielavia terrestris NRRL 8126]
gi|347003858|gb|AEO70257.1| hypothetical protein THITE_2121449 [Thielavia terrestris NRRL 8126]
Length = 708
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 181/641 (28%), Positives = 276/641 (43%), Gaps = 132/641 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-----AKKKFKKNKQVLKG 59
GVA IK+E+++ + + L+ E + E D A + K+ KQ KG
Sbjct: 46 GVAPIKEEYLIVSNGQALNPSAEGEALDDDVAEGRTAPDTQEAEQGAGQGGKRKKQ--KG 103
Query: 60 QNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE--- 114
QNK R TF C + CK+G++C +HD ++K + D+S
Sbjct: 104 QNKEREFGTFSDAQRLCNSVAWTPEFSPRPCKHGDRCNALHDIRKYLKEGRRPDLSTFGG 163
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKT------------ 162
+C V+ ++G CP G C F SH+DE VK D + VG+ +
Sbjct: 164 KCPVWEKYGRCPSGWRCLFVRSHMDE-----VKHDDGRSELVLVGDASKQSPEEDGEAGE 218
Query: 163 -----VNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
VNM+ V+ DL + EKS++ + +D+++
Sbjct: 219 VRPGVVNMVPAAVKIDLSRRRVKLEKSDQYLE---------------WLAKDTELYREHY 263
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRR 276
+ DD + + P K SEK+++ + + L+PLTT GNLPFRR
Sbjct: 264 HKQKNDVDDSKDYRAQYVEPP--------FKPSEKRRVYFGRETPVLAPLTTQGNLPFRR 315
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
LC + GA +T SEMA+ LL+ +W L++ HE E P C +++
Sbjct: 316 LCVELGAQLTYSEMALGLPLLQGQKADWTLMRAHEIE---------VTPPRFNPCGPVIQ 366
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL-FGVQLCGNNPYVLTKCTQLLEEQMV 395
G +L FG Q+ N P++ K T+ L +
Sbjct: 367 --------------------------GYDNSKDLKFGAQIAANVPWIAIKATEALSRFLP 400
Query: 396 -VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDN 453
+ +D+N GCP++ +YK G+GS LL + L+ ++ MN VS +P+TVK R G+ D
Sbjct: 401 HLRLIDLNCGCPVDMVYKSGAGSALLDAPSKLERMVRGMNTVSGEVPVTVKIRMGVKDDR 460
Query: 454 NIIHNFMPKFR-----------DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
H + + G + +TLHGRTR+QRYTK ADW YI +CA L + N
Sbjct: 461 FTAHKLVERLALGSEDMRGVVGAPGCAAVTLHGRTRQQRYTKAADWGYIAECAALIKQYN 520
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
R+ + + GR GNGD S+
Sbjct: 521 EKSDELADTIREAEENTLPSSGRMY------------------------FIGNGDCYSHV 556
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
DY + L + + VMIGRGAL+KPWIF+EI++ + D A
Sbjct: 557 DYFDHLDNA-KVDSVMIGRGALVKPWIFEEIEKGQYLDKSA 596
>gi|255724312|ref|XP_002547085.1| hypothetical protein CTRG_01391 [Candida tropicalis MYA-3404]
gi|240134976|gb|EER34530.1| hypothetical protein CTRG_01391 [Candida tropicalis MYA-3404]
Length = 619
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 176/609 (28%), Positives = 274/609 (44%), Gaps = 142/609 (23%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVN-ETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKA 63
GVA IK E++ +IE + E + + E + G + KKNK GQN
Sbjct: 28 GVAAIKPEYLAPVSESATAIEYNDDEAEGGGRDAEETDQRGNGRGNRKKNK----GQNHK 83
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQT-CKYG--EKCKFVHDKNVFMKSKPEDISEQCYV 118
R + + +D C L D E C G E CKF HD +++SKPEDI C V
Sbjct: 84 RK---LKQKKDTIKLCASLIDPEDESVVCSAGGAENCKFHHDVVSYLESKPEDIEGVCPV 140
Query: 119 FLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKT---VNMLANEVRQDLR 175
F GYCP GI CR+ SH ++ ++K+ L++++ V KT VN++ + D++
Sbjct: 141 FEAIGYCPSGIKCRWLKSHYNKETSKLIKD--LEKFE--VAKKTNCEVNVIDKNNKFDMQ 196
Query: 176 KHTYNFEKSEKICKENKAS-KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
K Y++ S + K +S KNE + + K+ ++ +E
Sbjct: 197 KKKYDYTISAPVIKYLDSSVKNEKNENQEERKDNEADYVEA------------------- 237
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
K +EKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++
Sbjct: 238 -----------PFKIAEKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSV 286
Query: 295 ELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPI 352
L++ EWAL K H SE FGVQ+ + + K + + V +++N GCPI
Sbjct: 287 PLIQGHNPEWALPKAHISEYPGFGVQIASSRHWPAAKAAEAIYRNTNHVSELNLNCGCPI 346
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ +YKQG GS L+ + + + ++
Sbjct: 347 DLLYKQGQGSALMDQPSKL-----------------------------------LRILHG 371
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLI 471
+ SG +P+TVK RTG+ + N + + ++ + I
Sbjct: 372 MSASSG-------------------DIPVTVKIRTGVREGKNTAKTLVRRVLQEGNTAAI 412
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGR+R+QRY+++ADWDYI + + ++W +
Sbjct: 413 TLHGRSRQQRYSREADWDYIAEVGSVV--------------KEWNEN------------- 445
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
++ D D A P GNGD+ S+ED+ + + I VM+ RGALIKPWIF+
Sbjct: 446 -QKEDKD-----ATDIQPVYFVGNGDVYSHEDWYNHV-NTDGIDSVMVARGALIKPWIFE 498
Query: 592 EIKEKKLFD 600
E++ ++ D
Sbjct: 499 EVEAQQYLD 507
>gi|50420831|ref|XP_458956.1| DEHA2D11286p [Debaryomyces hansenii CBS767]
gi|74631711|sp|Q6BS64.1|DUS3_DEBHA RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|49654623|emb|CAG87117.1| DEHA2D11286p [Debaryomyces hansenii CBS767]
Length = 622
Score = 218 bits (554), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 172/603 (28%), Positives = 272/603 (45%), Gaps = 128/603 (21%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A G+A IK EFIVE+ + + +N+ +E E D + + +GQNK
Sbjct: 31 AKGIAPIKAEFIVENPDVPVEEKYIND------DEAEGGDRQEEEGGKGGKNKKRRGQNK 84
Query: 63 ARGPTFVTKPEDC-YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + E+ C L D + C++G E C+ H+ ++ SKPEDI C V+
Sbjct: 85 KR--DLKQQHEEVRLCSSLLDPENPKECRFGAENCRNSHNVEEYISSKPEDIEGNCPVYT 142
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYCP G+ CR+ SH ++ ++K+ E + N VN + + + L+K Y
Sbjct: 143 AIGYCPAGLKCRWLHSHYNKETHKLLKDLEQVENAKALNNYEVNKITPDKKTSLQKKKYT 202
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
FE + ++ D +N+ ++ K QE+ K
Sbjct: 203 FEYASQMIPY----------LDSLVQNEA----------------NIEKAQEQAKENQST 236
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
+ K +EKKK++ + +SPLTTVGNLP+RRL K GAD+T SEMA++ LL+ +
Sbjct: 237 FVEA-PFKVAEKKKLNLRDAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLLQGT 295
Query: 301 PQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ 358
EWAL K H +E +GVQ+ + + + +E V +++N GCPI+ +Y+Q
Sbjct: 296 NAEWALPKAHRTEYPGYGVQIATSKHWAAAKAAEAIYKEATHVSELNLNCGCPIDLLYRQ 355
Query: 359 GSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSG 418
G GS L+++ L G N + SG
Sbjct: 356 GQGSALMEQPARLLRILKGMN-----------------------------------ASSG 380
Query: 419 LLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRT 477
+P+TVK RTG ++ N + + + + ITLHGR+
Sbjct: 381 -------------------DIPVTVKIRTGTKENKNTAKALVERILSENEVAAITLHGRS 421
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRYTK+ADW Y++ A NI+ ++ K D +E R T+
Sbjct: 422 RQQRYTKEADWSYVQDVA-------NIVQDWNNKKED-----------NKELRDTQ---- 459
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P GNGD+ ++ED+ ++ P + VM+ RGALIKPWIF+E++ ++
Sbjct: 460 -----------PTCFVGNGDVYTHEDWYNAV-NIPGVDSVMVARGALIKPWIFEEVEAQQ 507
Query: 598 LFD 600
D
Sbjct: 508 YLD 510
>gi|430813475|emb|CCJ29186.1| unnamed protein product [Pneumocystis jirovecii]
Length = 650
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 180/649 (27%), Positives = 279/649 (42%), Gaps = 193/649 (29%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEEL-------------EVEDDGTAKKKFK 51
G+A IK E++ +C+ +K K++EL ++ D + +
Sbjct: 26 GIAMIKPEYL----------KCITSYEK-KIDELIDKNKEFSENNVSDMNDFSNSLEAPI 74
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
K ++ +GQNK R + K D CP++ + ++ C+YGE CKF+H ++ KP+D
Sbjct: 75 KKRKKQRGQNKNR-KIVLEKEIDQLCPYI---SADKQCQYGEDCKFIHSIEDYLSRKPDD 130
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHL--------------DENGGNIVKEDVLKEWKNT 157
I + C VF G+C G CR+ + H+ D+N I K DVL
Sbjct: 131 IGKVCSVFDAKGWCASGWRCRWLNGHVLKPSLDTKTWRLIVDDNKAEIHKGDVL------ 184
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
N ++ + R+ L + Y KS + N D +N D+ ++
Sbjct: 185 ------NKVSADFRKQLSRKLYLTPKSSSYLALLDEKLHLNSFDDHESENIDANTLKD-- 236
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
+ + N+EKK+I W+ + L+PLTTVGN+PFRR+
Sbjct: 237 ---------------------------VPVDNTEKKRICWKDRKILAPLTTVGNIPFRRI 269
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESE---------DLFGVQLCGNNPYVL 328
C +GAD+T SEM V+ LL+ S EWAL + H SE LFG Q+CG+ +
Sbjct: 270 CCSFGADVTYSEMIVSLPLLQGSKSEWALPRAHISERSELRNGRRGLFGAQICGSKLWQS 329
Query: 329 TKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQ--------------GSGSGLLQRANLFGV 373
K T++L +DF+D+N GCPI+ IYKQ G+GS LL +
Sbjct: 330 IKATEVLANVCNEIDFIDLNCGCPIDLIYKQVKYSLLYLLKLRKKGAGSALLDSQTKM-I 388
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
++ G YV PI + G+
Sbjct: 389 KMLGGMTYVSN-------------------SIPITTKIRMGTK----------------- 412
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
S P +K + + ++ N+ S + LH R+R+QRYTK+ADW+YI +
Sbjct: 413 ---DSKPTAIKLISKLRRELNL-------------SAVVLHARSRQQRYTKKADWEYIRQ 456
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA--P 551
CA + S + K+ + DY E +++ +P
Sbjct: 457 CASMISA--------VKKYDAYNE--------------------DYKEN-SEIGNPPYMA 487
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGDI S+ED+ ++ + + MI RGALIKPWIF+EI+ KK D
Sbjct: 488 FIGNGDIYSWEDWEAAM--ASGVDTAMIARGALIKPWIFEEIESKKYID 534
>gi|224105275|ref|XP_002313751.1| predicted protein [Populus trichocarpa]
gi|222850159|gb|EEE87706.1| predicted protein [Populus trichocarpa]
Length = 362
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 176/357 (49%), Gaps = 103/357 (28%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+K+ EKK ID++GKLYL+PLTTVGNLPFRR+CK GAD+TC EMA+ T LL+ EW
Sbjct: 1 LKLHPREKKLIDFRGKLYLAPLTTVGNLPFRRVCKALGADVTCGEMAMCTNLLQGQASEW 60
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL++RH SEDLFGVQ+CG P +T+ +L++++ VDF+D+N+GCPI+ + +G+GS L
Sbjct: 61 ALLRRHSSEDLFGVQICGAYPDTVTRTVELIDQECTVDFIDINMGCPIDIVVNKGAGSSL 120
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
L T+ + + +++ + PI + G G
Sbjct: 121 L---------------------TKPMRMKSIIEATSGTVEKPITVKVRTGYFEG------ 153
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
K+R I + + WGAS +T+HGR+R+QRY+K
Sbjct: 154 -------------------KSR---------IDSLIVDIGKWGASAVTIHGRSRQQRYSK 185
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADWDYI +CA+ ++ N
Sbjct: 186 LADWDYIYQCARKAPDSLQVLGN------------------------------------- 208
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GD+ S+ D+ P +S MI RGALIKPWIF EIKE++ +DI
Sbjct: 209 -----------GDVFSFVDWNNHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDI 254
>gi|342321109|gb|EGU13046.1| tRNA-dihydrouridine synthase 3 [Rhodotorula glutinis ATCC 204091]
Length = 819
Score = 217 bits (552), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/360 (32%), Positives = 182/360 (50%), Gaps = 96/360 (26%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D+ ++ SEKK++D+ GK++++PLTTVGNLPFRRL ++G DIT SEM +A E L +
Sbjct: 440 DLAPVRASEKKRLDFAGKMWMAPLTTVGNLPFRRLAVEYGCDITVSEMGLAQEFLSGNAN 499
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
EW+L++RH SE FGVQ+CG+ P VL + + + +DF+DVN GCPI+ ++ +G+GS
Sbjct: 500 EWSLVRRHPSERQFGVQICGSKPQVLVPAAEAIVKHTDIDFLDVNCGCPIDLVFNKGAGS 559
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
LL A G L G
Sbjct: 560 ALLAHAGKLGKSLVG--------------------------------------------- 574
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQR 481
+ + EV L + ++T G+ + + H MP+F ++WG S +T+HGR+R+ R
Sbjct: 575 ------MSKVLGEV-PLTVKIRT--GVSNNQPVAHKLMPRFQKEWGVSAVTMHGRSRQAR 625
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y AD+ YI +C ++ R T + +
Sbjct: 626 YKHFADYKYIGECVKVL-------------------------------RETAEEEG---- 650
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+P P++GNGD + Y ++++KS + G+MI RGAL+KPWIF E+KE++ +DI
Sbjct: 651 -----VAPIPIFGNGDAYDHRTYWDNVEKS-GVDGIMIARGALVKPWIFTELKERRDWDI 704
>gi|452824786|gb|EME31786.1| tRNA-dihydrouridine synthase 3 [Galdieria sulphuraria]
Length = 508
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 125/362 (34%), Positives = 178/362 (49%), Gaps = 111/362 (30%)
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
+ + ID +GKLYL+PLTT+GNLPFRR+CK +GADITC EMA++ LL+ EWAL++RH
Sbjct: 198 DSRNIDLEGKLYLAPLTTLGNLPFRRICKHYGADITCGEMALSANLLQGQQSEWALLRRH 257
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
EDLFG+Q+ G+ P ++ + QL ++ +DF+D+N GCPIE + K+G G LL++
Sbjct: 258 REEDLFGIQIAGSKPEIMARAAQLTSKECDIDFIDINAGCPIELLCKKGGGCELLRQPEK 317
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G I+ S++
Sbjct: 318 LG---------------------------------------------------RIMSSMV 326
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+++ P+ K R GI +D+ + D GAS +T+HGRT+ QRY+K+ADW+Y
Sbjct: 327 QVVDK----PVFAKIRLGISQDHLNALKTIQILNDAGASAVTIHGRTKLQRYSKKADWEY 382
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+ +CAQL G +
Sbjct: 383 LYECAQL------------------GKEM-----------------------------SL 395
Query: 551 PLYGNGDILSYEDY-------TESLKKSP--SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+ GNGDI +YED T + SP S VMIGRGALIKPWIF E+KE++ +DI
Sbjct: 396 PIIGNGDIYTYEDIVHLNPYSTRAENSSPFAPFSAVMIGRGALIKPWIFTELKEQRHWDI 455
Query: 602 YA 603
A
Sbjct: 456 SA 457
>gi|66358006|ref|XP_626181.1| Ylr401cp-like protein with 2 CCCH domains plus Dus1p tRNA
dihydrouridine synthase Tim barrel [Cryptosporidium
parvum Iowa II]
gi|46227017|gb|EAK87967.1| Ylr401cp-like protein with 2 CCCH domains plus Dus1p tRNA
dihydrouridine synthase Tim barrel [Cryptosporidium
parvum Iowa II]
Length = 707
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 183/640 (28%), Positives = 292/640 (45%), Gaps = 135/640 (21%)
Query: 21 VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFL 80
++S +C NET ++++L+ + + K + + K +++ ++ K +D
Sbjct: 37 LISSKCQNETGISEVKKLKEDQNEANSSKKRSIRGSFKASERSQNLNYIAKMDDL----- 91
Query: 81 KDSTLEQTCKYGE------KCKFVHDKNVFMKSKPED-------------ISEQCYVFLQ 121
D +GE CK H+ F+K K E+ I + C +F
Sbjct: 92 -DRLCSNIAIFGECKLDHNTCKKSHNIEEFLKIKREEAESKIRDHEESLLIQKSCPLFEN 150
Query: 122 HGYCPMGIACRFGSSHLDEN-------GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+G C +G+ C FG SH +E+ G V + L+E+ N+ T+++ ++R L
Sbjct: 151 YGICHLGLNCEFGLSHFNESIMANVNSKGEKVTPEHLEEFFNSFEKNTIDI---QLRTGL 207
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP------NTDDVI 228
RK T NF K++ S N K DC KN + + + P NTD+
Sbjct: 208 RKKTMNFPKTKDFFDNYALSTN--KTLKDCEKNNPKPNCKKAQNFDNPLLVGLKNTDNST 265
Query: 229 KVQEETKSGPVLDTDI--------------------IKIKNSEKKKID---WQGKLYLSP 265
+ E+ GP T+I I I EK+K ++ KL L+P
Sbjct: 266 SLDEK---GPKTITEINNQPNIEIQQELKLSTEDMLIGISIHEKEKCKHKIFRNKLILAP 322
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
LTTVGNLPFRRLC K+GAD+T SEM + E+L E AL+K+ E FG+QL G N
Sbjct: 323 LTTVGNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKYFGIQLAGGNK 382
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
+ K + + E DF+D+N CP++ ++ +G+GS L+ R + + G
Sbjct: 383 STIIKTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMVKG-------- 434
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445
++++ ++V V ++ G GS + N S + P+ +
Sbjct: 435 LKKVMDGKLVTVKVRMSHG-----------GSPI----NKNLSEKDYFENFENWPV-IYH 478
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR--DNN 503
HK NI+ D G +T+HGRT QRYTK+ADW YI+ C+ L S+ N
Sbjct: 479 NMKTHKILNILC-------DSGIDALTIHGRTSFQRYTKEADWSYIKYCSVLNSKLYSNK 531
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
+++N ++ SLI C + G GDI++++D
Sbjct: 532 VVNN----IQNSNHSLI----------------------CPSII------GCGDIINFQD 559
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
Y + + ++ + VMIGRGAL+KPWIF EIKE + +DI A
Sbjct: 560 YQQHI-QNDLVDSVMIGRGALLKPWIFTEIKENRNWDISA 598
>gi|260949371|ref|XP_002618982.1| hypothetical protein CLUG_00141 [Clavispora lusitaniae ATCC 42720]
gi|238846554|gb|EEQ36018.1| hypothetical protein CLUG_00141 [Clavispora lusitaniae ATCC 42720]
Length = 611
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 177/599 (29%), Positives = 269/599 (44%), Gaps = 130/599 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G A IK E+I+E+ + D E + E+D +K+ K +GQNK R
Sbjct: 28 GFAPIKAEYIIEN------TKAEENYDDEAAEGGDRENDDRSKRSKKG-----RGQNKKR 76
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
K E C L D + C G +KCK HD ++ +KP DI +C VF G
Sbjct: 77 D-LKQQKEEIRLCSSLLDPNDSRECPVGADKCKNTHDIEYYLSTKPADIEGKCPVFEAIG 135
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YCP G+ CR+ SSH ++ ++K D+ K + + N +N + E R L+K+ Y F++
Sbjct: 136 YCPAGLKCRWLSSHYNKETKTLLK-DLAKIEEAKLTNYEINKIEPEHRIQLQKNKYEFKQ 194
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
+ K D +N D+ + + +E+I + I E P
Sbjct: 195 ATPYIKY----------LDSLVQN-DANIAKRQEDIK-----NNISTYVEPPFAP----- 233
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+EKKKI+ +SPLTTVGNLP+RRL K GAD+T SEMA+A LL+ + E
Sbjct: 234 ------AEKKKINLNRAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALALPLLQGTKPE 287
Query: 304 WALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSG 361
WAL K H SE FG+QL N+ +K + + + V +++N GCPI+ +Y+QG G
Sbjct: 288 WALPKAHASEYPGFGIQLATNHHQQASKAAEAISREAPNVSELNLNCGCPIDLLYRQGQG 347
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S LL + + L G N C+ + P+ + G
Sbjct: 348 SALLDQPSKMVRILNGMN-----ACSGDI---------------PVTLKIRTG------- 380
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
T N+ +++P+ + H + ITLHGR+R+QR
Sbjct: 381 ---------TKDNKNTAIPLINRMLADTH-----------------VAAITLHGRSRQQR 414
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
YT++ADW+YI + + +E + K+ D D E
Sbjct: 415 YTREADWNYIAEVGKTV----------------------------QEWNHKKEEDKDSSE 446
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+P GNGD +YE + ++ + I VM+ RGALIKPWIF+E+ ++ D
Sbjct: 447 -----TNPTWFIGNGDCFTYEQWHNAV-NTEGIDSVMVARGALIKPWIFEEVDAEQYLD 499
>gi|50554001|ref|XP_504409.1| YALI0E26048p [Yarrowia lipolytica]
gi|74633334|sp|Q6C4K3.1|DUS3_YARLI RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|49650278|emb|CAG80010.1| YALI0E26048p [Yarrowia lipolytica CLIB122]
Length = 622
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 159/529 (30%), Positives = 244/529 (46%), Gaps = 122/529 (23%)
Query: 80 LKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLD 139
K+ Q C YG+KCKF HD +++SKP+DI C VF G CP G CR+ SSH D
Sbjct: 100 FKEDGSPQECSYGDKCKFEHDLQKYLESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRD 159
Query: 140 ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
G +V E+ + K NK +N + + L++ Y+ KS
Sbjct: 160 SEGKLLVDEE---KKKANADNKELNHVFKHL-NPLQRKKYDLSKS--------------- 200
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQG 259
D+ K D++++ R+E D+ K++++ ++ D +I+ SEKKK+D +G
Sbjct: 201 --DEAIKLIDAQIV--RDE-----DDEQTKLEKKE----TIEIDTGRIRPSEKKKLDLKG 247
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE----DL 315
K +SPLTTVGNLP+RRL K GAD+T EMA+ L++ EWAL + H SE +
Sbjct: 248 KYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCHSSEVTEGNH 307
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FGVQ+ + K Q + E + +++N GCPI+ +Y+QG+GS L+
Sbjct: 308 FGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALMD-------- 359
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+QG + A I++ +
Sbjct: 360 -------------------------------------QQG------KTARIVRGMSMVSG 376
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+V PITVK RTG + + TLHGR+R QRYTK ADW+YI +
Sbjct: 377 DV---PITVKMRTGTGSTPTAKKLTARLLAEGQTAAFTLHGRSRAQRYTKLADWNYIREV 433
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A S++ RE+ D++ + P + G
Sbjct: 434 AD---------------------SVVNTRDDVREKSELD----DHV-----ISHPTWVVG 463
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
NGD ++ D+ ++ ++ + VM+ RGALIKPWIF+E++ ++ D A
Sbjct: 464 NGDCYTWSDWHRAVDEA-HVDSVMVARGALIKPWIFEEVESRQHIDKSA 511
>gi|367014121|ref|XP_003681560.1| hypothetical protein TDEL_0E01060 [Torulaspora delbrueckii]
gi|359749221|emb|CCE92349.1| hypothetical protein TDEL_0E01060 [Torulaspora delbrueckii]
Length = 637
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 185/614 (30%), Positives = 284/614 (46%), Gaps = 127/614 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
+ GVA +K EFIV V I E ++ +D K+K KK Q N+
Sbjct: 23 SKGVAHLKPEFIVYTQEVVRPIVYDEEPSSDRMLNDIGSNDSGKKRKNKKKGQNKNRDNR 82
Query: 63 ARGPTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PEDISE---QCY 117
K + CP +++ S + C +G++C+FVHD +++ +K PE SE +C
Sbjct: 83 Q------VKEINALCPRYIQGSESGEICSFGDQCRFVHDIPLYLSTKKPEIESEIFVECP 136
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
V+ G CPMG CRF SSH++++ + KE+ K N VN + + DL K
Sbjct: 137 VYKSLGRCPMGFKCRFLSSHMEDS--KLRKEESELCSKLWELNHEVNHIDGSAKLDLVKR 194
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSG 237
+ F KSE++ + A + E++D + +K+ E + V++ ++E ++
Sbjct: 195 RFPFSKSEEVLEIIDAIQQEHRDF--TASKEATKIDEDK-------APQVVQREKELQAK 245
Query: 238 PVLDTDII-KIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMA 291
D+ K K++ EKK +D K +SPLTTVGNLP+RRL +K GAD+T SEMA
Sbjct: 246 RERQRDLYNKYKDTRYFAGEKKALDLHRKKIVSPLTTVGNLPYRRLMRKLGADVTYSEMA 305
Query: 292 VATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL-- 348
++ L++ + EWAL K H SE +GVQ+ + + K + L E + ++NL
Sbjct: 306 LSVPLIQGTNSEWALPKAHVSEYPGYGVQIACSKAWQAAKAAEALAEHSSGHISEINLNS 365
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408
GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 366 GCPIDLLYRQGSGSALL------------DNPARMIRC---------------------- 391
Query: 409 FIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF-RDW 466
+ MN VS +P+TVK RTG ++ I + + +
Sbjct: 392 ---------------------LNAMNYVSGEIPVTVKIRTGTKDEHPIAEGLVKRLVNET 430
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526
+ ITLHGR+R+QRYTK ADWDYI K A T
Sbjct: 431 DVAAITLHGRSRQQRYTKLADWDYISKVAT-----------------------------T 461
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
Q + I+ GNGD+ ++ED+ + + +I VM+ RGALIK
Sbjct: 462 LRQCEEEAERERRIQ----------FVGNGDVNNFEDWYAHVNSNEAIDSVMVARGALIK 511
Query: 587 PWIFQEIKEKKLFD 600
PWIF+E+ ++ D
Sbjct: 512 PWIFEEVDAQQHLD 525
>gi|67587982|ref|XP_665290.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54655895|gb|EAL35060.1| hypothetical protein Chro.50134 [Cryptosporidium hominis]
Length = 677
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 179/636 (28%), Positives = 290/636 (45%), Gaps = 127/636 (19%)
Query: 21 VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFL 80
++S +C NE D ++++L+ + D T K + + K +++ ++ K +D
Sbjct: 7 LISSKCQNEADILEMKKLKEDQDETYSSKKRSIRGSFKASERSQNLNYIAKMDDL----- 61
Query: 81 KDSTLEQTCKYGE------KCKFVHDKNVFMKSKPED-------------ISEQCYVFLQ 121
D +GE CK H+ F+K K E+ I + C +F
Sbjct: 62 -DRLCSNIAIFGECKLDHNICKKSHNIEEFLKIKREEAETKIRDHEESLLIQKSCPLFEN 120
Query: 122 HGYCPMGIACRFGSSHLDEN-------GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+G C +G+ C+FG SH +E+ G V + L+E+ N+ T+++ ++R L
Sbjct: 121 YGICHLGLNCKFGLSHFNESIMANVNSKGEKVTPEHLEEFFNSFEKNTIDI---QLRTGL 177
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP------NTDDVI 228
R+ T NF K++ S N K DC K + + + P NTD+
Sbjct: 178 RQRTMNFPKTKDFFDNYTLSTN--KTLKDCEKKNPKPNCKKAQNFDNPLLVGLKNTDNST 235
Query: 229 KVQE-------ETKSGPVLDTD----------IIKIKNSEKKKID---WQGKLYLSPLTT 268
+ E ET + P ++ +I I EK+K ++ KL L+PLTT
Sbjct: 236 PLDEKGPNTITETNNQPNIEIPQELKLSTEDMLIGISIHEKEKCKHKIFRNKLILAPLTT 295
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328
VGNLPFRRLC K+GAD+T SEM + E+L E AL+K+ E FG+QL G N +
Sbjct: 296 VGNLPFRRLCLKFGADVTVSEMVLCNEILSGKASELALLKKSPEEKHFGIQLAGGNKSTI 355
Query: 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQ 388
K + + E DF+D+N CP++ ++ +G+GS L+ R + + G +
Sbjct: 356 IKTGEFINEHCEFDFIDINAACPLKSLHDKGAGSILVDRVSELETMVKG--------LKK 407
Query: 389 LLEEQMVVDFVDVNL-GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447
+++ ++V V ++ G PI K S + + P+ +
Sbjct: 408 VMDGKLVTVKVRMSHGGSPIN---KNLSEKDYFEN-------------FENWPV-IYHNM 450
Query: 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
HK NI+ D G +T+HGRT QRYTK+ADW YI+ C+ L S+
Sbjct: 451 KTHKILNIL-------CDSGIDALTIHGRTSFQRYTKEADWSYIKYCSVLNSK------- 496
Query: 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567
Y+ + + L P+ + G GDI++++DY +
Sbjct: 497 ----------------------LYSNKVANNIQSSNHSLFCPS-IIGCGDIINFQDYQQH 533
Query: 568 LKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ ++ + VMIGRGAL+KPWIF EIKE + +DI A
Sbjct: 534 I-QNDLVDSVMIGRGALLKPWIFTEIKENRNWDISA 568
>gi|328877006|gb|EGG25369.1| CCCH-type zinc finger-containing protein [Dictyostelium
fasciculatum]
Length = 699
Score = 214 bits (546), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 177/366 (48%), Gaps = 110/366 (30%)
Query: 241 DTDI---IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
DT I IK++ EKK I ++ +LYL+PLTTVGNLPFRRLCK G DITC EMA+A+ ++
Sbjct: 331 DTQIEKEIKLRACEKKTISFKDQLYLAPLTTVGNLPFRRLCKDLGVDITCGEMALASNIV 390
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
E AL KRH SED FGVQ+CG + + + + E M VDFVD+N GCPI+ +
Sbjct: 391 IGQQSELALFKRHASEDKFGVQVCGPHLDSMIHTAEFINEYMDVDFVDINSGCPIDLVCN 450
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
G+G+ +++R N + G + +DV L
Sbjct: 451 MGAGAAMMERPNRMETLVRG-----------------MSSVLDVPL-------------- 479
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
T+K R G +++ H +P ++WGA +TLHGR+
Sbjct: 480 ------------------------TIKIRIGKSEESPNAHKLIPNLKEWGAQAVTLHGRS 515
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R QRYT+ A+W+YI +CA +
Sbjct: 516 RAQRYTRLANWEYIRECADI---------------------------------------- 535
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
SP PL NGDI ++ D E +K+S IS +M+ RGALIKPWIF EIKE++
Sbjct: 536 ----------SPLPLIANGDIYNWRD-IEKVKES-KISSLMVARGALIKPWIFTEIKERR 583
Query: 598 LFDIYA 603
+DI A
Sbjct: 584 DWDISA 589
>gi|295664322|ref|XP_002792713.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278827|gb|EEH34393.1| tRNA-dihydrouridine synthase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 744
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 190/648 (29%), Positives = 287/648 (44%), Gaps = 133/648 (20%)
Query: 5 GVAKIKQEFIVE-----DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKG 59
GVA IK+E+++E + ++ + + K E ++ TAK+ K + V +
Sbjct: 69 GVAPIKKEYLIEISPGTTQLPPGTVPDDDAAEAAKHHEQASDNKSTAKRAKKGGQNVNRK 128
Query: 60 QNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
+++ + + + F D C +G CKF HD ++K K D+
Sbjct: 129 FGRSQDEKQLCQTVAYHSEFSPDP-----CPWGTSCKFEHDIRKYLKEYKRADLDAFGGV 183
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKE---------WKNTVG-NKTVN 164
C V+ G CP G CRF SH+ E + KE VL E KN +G + VN
Sbjct: 184 CPVWEAKGRCPAGWKCRFVGSHMTERETKDGRKELVLVEDFTRMKNPASKNGIGIDGAVN 243
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
+++ E + L K Y K++ +K SK K+ +NQD E E PN
Sbjct: 244 VVSTEDKLSLAKKRYKTPKADSFTTWLDKVSKEVEKNLHG--RNQD----EAAPEPEKPN 297
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
D +++E + T+ + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 298 GQDASDLRDEKEDNRARYTEPPFLP-SEKRRVYFGPETPVLAPLTTQGNLPFRRLCVDLG 356
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 357 AQLTYSEMAMSMNLVQGSKSEWALMKAHESETLPPTVNPNQTIVKDYDNSRDLKFGAQIT 416
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V K T+ L Q+ V +D+N GCPI+ ++++GSGS LL A+ L G
Sbjct: 417 GNKPWVALKATEALTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKLEKILRGM 474
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC---MNE 435
N V+ PI + G+ +++ ++ +E
Sbjct: 475 NA--------------------VSGEIPITAKIRMGTKDSNPNATKLIERLVLGGVESHE 514
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
+ P G + ITLHGR+R+QRY++QADW YI +CA
Sbjct: 515 IGRGPA-------------------------GVAAITLHGRSRQQRYSRQADWGYIGQCA 549
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
L R N I++ K+AD Y ++ GN
Sbjct: 550 ALVKRLNEQINSGT--------------------DTAKEADARYQSSAGKVF----FLGN 585
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GD S+EDY ++ S + VMI RGAL+KPWIF+EIK+ + D A
Sbjct: 586 GDCYSHEDYFNGIRNS-GVDTVMIARGALMKPWIFEEIKKGQYLDKSA 632
>gi|448512965|ref|XP_003866850.1| transcription factor [Candida orthopsilosis Co 90-125]
gi|380351188|emb|CCG21411.1| transcription factor [Candida orthopsilosis Co 90-125]
Length = 616
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 159/529 (30%), Positives = 244/529 (46%), Gaps = 127/529 (24%)
Query: 77 CPFLKDSTLEQTCKYGE-KCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP + D ++C GE KCK+ HD ++ SKP+D+ C VF GYCP G+ CR+
Sbjct: 97 CPSIVDPDDTKSCFLGEDKCKYSHDLQGYLASKPDDVGGICPVFEALGYCPAGMKCRWLK 156
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASK 195
SH D ++K D+ K + N VN++ E + L+K Y F
Sbjct: 157 SHYDRETNKLIK-DLEKIDLASKTNYEVNIIDKEAKFALQKKKYEF-------------- 201
Query: 196 NENKDTDDCCKNQDSKVI-EGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
K + DSK+ E REE ++E ++ V K +EKKK
Sbjct: 202 ---KIVNPVINFLDSKIQNETREE------------RKENEATYVEQP----FKIAEKKK 242
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE- 313
I+ +SPLTTVGNLP+RRL K GAD+T SEMA++ L++ EWAL K H SE
Sbjct: 243 INLNRAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSIPLVQGHNPEWALPKAHVSEY 302
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
FGVQ+ + + K ++ + E V +++N GCPI+ +Y+QG GS LL
Sbjct: 303 PGFGVQIASSKLWSAAKASEAIYENTNHVSELNLNCGCPIDLLYRQGQGSALL------- 355
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+ P L + + + + SG
Sbjct: 356 -----DQPPRLLRLVKAM-----------------------NASSG-------------- 373
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYI 491
+P+T+K RTG+ ++ N + + + + ITLHGR+R+QRY+K+ADW+YI
Sbjct: 374 -----DIPVTIKIRTGVKENKNTAKQLVDRVLTETQVAAITLHGRSRQQRYSKEADWEYI 428
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ ++ +DW A ++ D D + +P
Sbjct: 429 SEVGKVV--------------KDWNAK--------------REEDKDSFD-----LAPTW 455
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD+ S+ED+ + + + VM+ RGALIKPWIF+E++ ++ D
Sbjct: 456 FVGNGDVYSHEDWYNHV-NTDGVDSVMVARGALIKPWIFEEVEAQQYLD 503
>gi|320583736|gb|EFW97949.1| Dihydrouridine synthase [Ogataea parapolymorpha DL-1]
Length = 618
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 173/600 (28%), Positives = 274/600 (45%), Gaps = 125/600 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IKQE++V V + N+ +E E + K+ KK K+ +GQNK R
Sbjct: 28 GVAPIKQEYLVIGGV----VADYND------DEAESSKHTSGDKESKKEKK--RGQNKKR 75
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
+ + + + C YG +KC+F HD ++ +KP DI C V+ G
Sbjct: 76 DLRQAHEEIKLCSSVVDPNDKTKECPYGADKCRFSHDIQAYLAAKPADIEGICPVYAAIG 135
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YCP G+ CR+ SH + G +++E+ + E K G VN ++ + L+K
Sbjct: 136 YCPSGVKCRWLGSHYNPETGLLLEEEGV-EKKEHKGE--VNWISAATKSQLQKKKLPMPV 192
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
S D+ + DS VI E+ + + +E K T+
Sbjct: 193 S-----------------DEVIRFLDSVVIVNDEKNSMTKEERENHEPDEKKLNAASYTE 235
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+ + EKK+++ + +SPLTTVGNLP+RRL + GAD+T SEMA+A L++ S E
Sbjct: 236 S-RFRTGEKKRLNLKNAKIVSPLTTVGNLPYRRLMRTLGADVTYSEMALALPLIQGSNSE 294
Query: 304 WALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSG 361
WAL + HESE FGVQ+ + K + ++ + V +++N GCPI+ +Y++G G
Sbjct: 295 WALPRAHESEYPGFGVQIATAKHWQACKAAEAIQTLTSHVSELNLNCGCPIDMLYRKGEG 354
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S LL +NP + +
Sbjct: 355 SALL------------DNPSRMLR------------------------------------ 366
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQ 480
IL+ + E+ P+TVK R G+ D + N + + + + ITLHGR+R+Q
Sbjct: 367 ---ILKGMSYSSGEI---PVTVKIRMGVKDDKPVAENLVRRVLNETDVAAITLHGRSRQQ 420
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYT+ ADWDYI SR ++ ++ EQ ++ D D +
Sbjct: 421 RYTRAADWDYI-------SRVGAVVKDY------------------NEQ---QEEDKDKV 452
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
++ P GNGD ++ED+ ++ I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 453 DR-----PPVYFVGNGDCFTHEDWHRAVSDE-GIDSVMVARGALIKPWIFEEVEAQQYLD 506
>gi|412993947|emb|CCO14458.1| predicted protein (Partial), partial [Bathycoccus prasinos]
Length = 491
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 146/458 (31%), Positives = 223/458 (48%), Gaps = 100/458 (21%)
Query: 48 KKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVF-MK 106
KK K + KG+ + G + + C+ FLK+++ C GE C+F HD + + +K
Sbjct: 80 KKMNKAMTMKKGKRRNEGGEDNEEVQMCF-QFLKNAS----CAKGETCRFSHDADYYRLK 134
Query: 107 SKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKED-VLKEWKNTVGN--KTV 163
K +D+ C + CP G+ACRF SH E+G +ED + ++ V N
Sbjct: 135 MKKKDLPGWCPFGSEK--CPFGLACRFSGSH--EDGFAPDEEDEAIALFEAPVANPRDDT 190
Query: 164 NMLANEVRQDLRKHTYNFEKSEKICKE------------NKASKNENKDTDD-------- 203
N + N+V+ L + T++F +++ I K S N KD D
Sbjct: 191 NDVTNDVKYALARRTFDFSRADGILKAMGLRTSDEVRGGGDDSTNNRKDNDGKNQQQQKY 250
Query: 204 ----CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIK--------IKNSE 251
+N+ + E +E + + D S P D + +K E
Sbjct: 251 KRMKTSENEKRVIAENADEYSDDDDDGNNNNNNNVTSEPAFDKEDENKTASVDQLLKPKE 310
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KK ID++ KLYL+PLTTVGNLPFRRLCK GADITC EMA+AT LLK +EWAL++RH+
Sbjct: 311 KKTIDFKNKLYLAPLTTVGNLPFRRLCKTLGADITCGEMALATSLLKGDAREWALVRRHK 370
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
SED+FGVQ+CG + L +C Q L++ + DF+D+N+GCPI+ I +G+GS LL++
Sbjct: 371 SEDIFGVQICGGHSDSLGRCVQALDDTIECDFIDINMGCPIDLICNKGAGSMLLEKP--- 427
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+ +EE L++ +N+
Sbjct: 428 ----------------KRMEE--------------------------LVRSSNL------ 439
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+ S+P+T KTR G + + H F+P+ ++WGAS
Sbjct: 440 ----ICSVPLTFKTRMGYKDTSRVAHTFVPRIKEWGAS 473
>gi|412992487|emb|CCO18467.1| predicted protein [Bathycoccus prasinos]
Length = 658
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 152/498 (30%), Positives = 233/498 (46%), Gaps = 144/498 (28%)
Query: 125 CPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKS 184
CP G+ C F H EN N + L EW+ + G++ N + + +++ LR+ TY +S
Sbjct: 157 CPFGVRCYFSDRH--EN--NAKESKTLLEWRRSEGSEEFNAMEDWLQKKLRESTYLLPRS 212
Query: 185 EKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
K E D C ++ K IN N DD E +
Sbjct: 213 TKYL--------EMVGNDLLCVSKAKK--RKITAINRNNKDDDANENENEE--------- 253
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
K +K ID+ KL L+PLTTVG+ PFRR+C K+GAD+T SEMA+A+ LL +EW
Sbjct: 254 ---KTVKKNAIDFNKKLVLAPLTTVGHAPFRRMCVKFGADVTISEMAMASNLLAGDRREW 310
Query: 305 ALIKRHESE----DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
AL++RH E + FGVQ+CG P ++++C +L+E ++ DF+D+N+GCPI+ + +G+
Sbjct: 311 ALVRRHACESSATNKFGVQICGGYPDLVSRCVELIENEVQCDFIDINMGCPIDGVCAKGA 370
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
GS LL TQL +G L
Sbjct: 371 GSTLL---------------------TQL--------------------------KTGKL 383
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIH--KDNNIIHNFMPK--------FRD----- 465
++ I+ + + + ++ P+T+K R G H K H+ + + RD
Sbjct: 384 EK--IIDAASSSLRKI---PLTIKIRMGYHDRKQQWNAHDIVNRCCSAPSSTSRDSLNAG 438
Query: 466 W--GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
W + +TLHGRTR QRY++ ADW+YI++C ++ +N +
Sbjct: 439 WLGKVAAVTLHGRTRAQRYSRLADWEYIDECGKIAQTVSNGV------------------ 480
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
PL GNGD+ +YEDY + S +++ MIGRGA
Sbjct: 481 --------------------------VPLIGNGDVYTYEDYNAHV-DSGNVATCMIGRGA 513
Query: 584 LIKPWIFQEIKEKKLFDI 601
+IKPW+FQEIKE++ D+
Sbjct: 514 IIKPWLFQEIKEQRHIDV 531
>gi|302682790|ref|XP_003031076.1| hypothetical protein SCHCODRAFT_82562 [Schizophyllum commune H4-8]
gi|300104768|gb|EFI96173.1| hypothetical protein SCHCODRAFT_82562 [Schizophyllum commune H4-8]
Length = 701
Score = 213 bits (542), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 156/567 (27%), Positives = 246/567 (43%), Gaps = 121/567 (21%)
Query: 87 QTCKYGEKCKFVHDKNVFMKSKPEDI--------------------------------SE 114
+TC++GE+CKF HD ++ +KP D+
Sbjct: 92 ETCEFGERCKFTHDIAAYLAAKPHDLRIPQTSEISTEAPFYVPPPLVVADPENPSLDPHT 151
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENG-GNIVKE---------DVLKEWKNTVGNKTVN 164
+C +F G C G+ CR +H+ +N G++ K D K + + +N
Sbjct: 152 RCPIFDTMGVCKSGLKCRLLGAHVRKNDDGSLYKNEAGLLELVTDEEKRARTVISETELN 211
Query: 165 MLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT 224
L EVR L K Y + ++ K+ ++ K + + K E +
Sbjct: 212 YLHPEVRTKLFKKRYEYPITDAYLKDLESKKVVIAEPEQEEPGWAGKADETDASTTAASA 271
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD 284
D ET + P L+ + N+ P+ + + ++ GAD
Sbjct: 272 SDGPTTSTETPAVPTLEVPAVPTPNA--------------PVAPSADA---LITQRTGAD 314
Query: 285 ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF- 343
+ + +A ++ + +E + L + GN P+ ++ VD+
Sbjct: 315 PSQLDEPMAVDVPFRA-EEKKRLHWEGKTYLAPLTTVGNLPF----------RRICVDYG 363
Query: 344 VDVN---LGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMV-- 395
VD+ +G F+ L++R +FGVQ+ GN P + + +LL+ ++
Sbjct: 364 VDITCGEMGLATSFLSGSKEEWSLVRRHPSEKMFGVQMAGNKPNTMVRAAELLKNEIGPH 423
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VSSLPITVKTRTGIHKDNN 454
VDFVD+N GCPI+ +YK GSGS LL L +I MN+ + P++VK RTG+ N
Sbjct: 424 VDFVDINCGCPIDLVYKTGSGSALLDSPGKLGRIIVGMNKALGDTPVSVKLRTGVKDGKN 483
Query: 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
H MP+ +WGA ++TLHGRTR+QRYTK ADWDY+ +C Q R N +PK
Sbjct: 484 NAHRLMPRVAEWGAGMMTLHGRTRQQRYTKLADWDYVRECVQAV-RAYEAEKN-LPKV-- 539
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
P++G GD S +DY ++ + +
Sbjct: 540 ------------------------------------PIFGGGDCYSSQDYWTDVETT-GV 562
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDI 601
GVMIGRGALIKPWIF EIKE++ +DI
Sbjct: 563 DGVMIGRGALIKPWIFTEIKERREWDI 589
>gi|406695892|gb|EKC99190.1| hypothetical protein A1Q2_06507 [Trichosporon asahii var. asahii
CBS 8904]
Length = 673
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 94/364 (25%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+ ++ EK+++DW+ YL+PLTTVGNLPFRRLC +GA IT SEMA+A L+ +EW
Sbjct: 286 VPLRPEEKRRLDWENGRYLAPLTTVGNLPFRRLCVDYGATITISEMALAQPLVTGQTEEW 345
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM---AVDFVDVNLGCPIEFIYKQGSG 361
AL++RH SE +FGVQL G P + +++ +++ VDFVD+N+ G+G
Sbjct: 346 ALVRRHHSEKMFGVQLAGGYPNRMVPAAEVIAKELGPSGVDFVDINM----------GAG 395
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L++ G L G N L +
Sbjct: 396 SALMENPGRLGKILVGMN-------------------------------------RALGE 418
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQ 480
+ L+ ++ +++ +P+TVK R G+ + H +PKF +WGAS +TLHGR+R+Q
Sbjct: 419 SESNLRLSLSTFFQLTPVPLTVKFRMGVAHNKPTAHKLIPKFATEWGASAMTLHGRSRQQ 478
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RY+K A+W+Y+ +C +++H
Sbjct: 479 RYSKLANWEYVRECV-------DVLH---------------------------------- 497
Query: 541 EKCAQLCSP-APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
+ C P P++GNGD S + Y E ++S + GVM+ RGALIKPWIF EI E++ +
Sbjct: 498 QSCDDANMPRVPIFGNGDCFSAQSYWEEKERS-GVDGVMVARGALIKPWIFTEIAERREW 556
Query: 600 DIYA 603
DI A
Sbjct: 557 DISA 560
>gi|401884151|gb|EJT48323.1| hypothetical protein A1Q1_02606 [Trichosporon asahii var. asahii
CBS 2479]
Length = 673
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 183/364 (50%), Gaps = 94/364 (25%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+ ++ EK+++DW+ YL+PLTTVGNLPFRRLC +GA IT SEMA+A L+ +EW
Sbjct: 286 VPLRPEEKRRLDWENGRYLAPLTTVGNLPFRRLCVDYGATITISEMALAQPLVTGQTEEW 345
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM---AVDFVDVNLGCPIEFIYKQGSG 361
AL++RH SE +FGVQL G P + +++ +++ VDFVD+N+ G+G
Sbjct: 346 ALVRRHHSEKMFGVQLAGGYPNRMVPAAEVIAKELGPSGVDFVDINM----------GAG 395
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L++ G L G N L +
Sbjct: 396 SALMENPGRLGKILVGMN-------------------------------------RALGE 418
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQ 480
+ L+ ++ +++ +P+TVK R G+ + H +PKF +WGAS +TLHGR+R+Q
Sbjct: 419 SESNLRLSLSTFFQLTPVPLTVKFRMGVAHNKPTAHKLIPKFATEWGASAMTLHGRSRQQ 478
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RY+K A+W+Y+ +C +++H
Sbjct: 479 RYSKLANWEYVRECV-------DVLH---------------------------------- 497
Query: 541 EKCAQLCSP-APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
+ C P P++GNGD S + Y E ++S + GVM+ RGALIKPWIF EI E++ +
Sbjct: 498 QSCDDANMPRVPIFGNGDCFSAQSYWEEKERS-GVDGVMVARGALIKPWIFTEIAERREW 556
Query: 600 DIYA 603
DI A
Sbjct: 557 DISA 560
>gi|149247657|ref|XP_001528237.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|187471054|sp|A5DTS1.1|DUS3_LODEL RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|146448191|gb|EDK42579.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 642
Score = 212 bits (540), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 237/512 (46%), Gaps = 106/512 (20%)
Query: 92 GEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL 151
E CK+ H+ ++ +K +DI C V+ GYCP G+ CR+ SH ++ ++K D+
Sbjct: 123 AENCKYSHNIEEYLAAKSDDIEGTCPVYEALGYCPSGLKCRWLHSHYNKETKKLIK-DLE 181
Query: 152 KEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSK 211
K + N VN++ E + L++ +NF+ S + N + KD K +
Sbjct: 182 KLEREKSKNHEVNIIDRESKVALQRKKFNFDISTPVI--NFLESRKQKDDGKQNKEEQEA 239
Query: 212 VIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGN 271
+G E+ QEE K + K +EKKKI+ +G +SPLTTVGN
Sbjct: 240 STDGNEK------------QEERKDNEASYVEQ-PFKVAEKKKINLRGAKIVSPLTTVGN 286
Query: 272 LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPY-VLT 329
LP+RRL K GAD+T SEMA+A L + EWAL K H +E FGVQ+ + +
Sbjct: 287 LPYRRLMKTLGADVTYSEMALAVPLSQGHRPEWALPKAHVTEYPGFGVQIASSKHWAAAK 346
Query: 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQL 389
L + + V +++N GCPI+ ++KQG GS LL ++P L
Sbjct: 347 AAEALYKTTLHVSEINLNCGCPIDLLFKQGQGSALL------------DSPPRL------ 388
Query: 390 LEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449
I + + SG +P+T+K RTG+
Sbjct: 389 -----------------IRIVKAMNASSG-------------------DIPVTIKIRTGV 412
Query: 450 HKD-NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNF 508
++ N +H + + ITLHGR+R+QRYTK+ADWDYIE+ ++
Sbjct: 413 KENKNTAVHLVNRVLEETQVAAITLHGRSRQQRYTKEADWDYIEEVGKVV---------- 462
Query: 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
+ W K+ D D K + +P GNGD+ S+ED+ +
Sbjct: 463 ----KTWN---------------EKREDED---KEGRDTNPTWFVGNGDVYSHEDWYNGV 500
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ + VM+ RGALIKPWIF+E++ ++ D
Sbjct: 501 NRE-GVDSVMVARGALIKPWIFEEVEAQQYLD 531
>gi|223590199|sp|A5DBS1.2|DUS3_PICGU RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|190344863|gb|EDK36628.2| hypothetical protein PGUG_00726 [Meyerozyma guilliermondii ATCC
6260]
Length = 607
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 168/599 (28%), Positives = 268/599 (44%), Gaps = 131/599 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK EFIVE+ VN+ D + E K+ K + + + + R
Sbjct: 25 GIAPIKPEFIVENPSVPADDRYVNDDDAEAGDRNGEEKGKKKKRGQNKKRDMRQQHEEVR 84
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
C L D + TC++G E C+ HD ++ +K DI C VF G
Sbjct: 85 -----------LCSSLLDPSNPGTCRFGPEHCRSTHDVTTYLAAKAPDIDGVCPVFKSIG 133
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YCP G+ CR+ +SH ++ G + ++ + + G VN ++ E + L+K Y FE
Sbjct: 134 YCPAGLKCRWLNSHYED--GKLKRDQSQIDAYASSGQGEVNKISTEAKLALQKKKYLFEV 191
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
S D+ K DS+V +D+ I +EE K +
Sbjct: 192 S-----------------DNVIKYLDSQV----------QSDENIAKREEAKENNASYVE 224
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
K +EKKK+D +G +SPLTTVGNLP+RRL K GAD+T SEMA++ LL+++ E
Sbjct: 225 A-PFKIAEKKKLDLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSLPLLQATNSE 283
Query: 304 WALIKRHESE-DLFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSG 361
WAL K H SE FGVQ+ + + K +++ +E V +++N GCPI+ +Y+QG G
Sbjct: 284 WALPKAHSSEYPGFGVQIATSKHWAAAKAAEVIYKETTHVSELNLNCGCPIDLLYRQGQG 343
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L+++ L G N + P+ + G+
Sbjct: 344 SALMEQPARLLRILKGMNA--------------------SSGDIPVTVKIRTGTKDNKNT 383
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
++++ V+ N+V+++ TLHGR+R+QR
Sbjct: 384 AKSLVERVL-AENDVAAI--------------------------------TLHGRSRQQR 410
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
YTK ADW+YI++ + + NN K+ D
Sbjct: 411 YTKDADWEYIKEVGAVVTEWNN----------------------------KKEED----- 437
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
K + + GNGD+ ++ED+ ++ + + VM+ RGALIKPWIF+E++ ++ D
Sbjct: 438 KESSETNRTNFVGNGDVFTHEDWYNAV-NTEGVDSVMVARGALIKPWIFEEVEAQQYLD 495
>gi|68466823|ref|XP_722607.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|68467102|ref|XP_722466.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|74587613|sp|Q5ALL3.1|DUS3_CANAL RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|46444444|gb|EAL03719.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
gi|46444594|gb|EAL03868.1| potential tRNA dihydrouridine synthase [Candida albicans SC5314]
Length = 613
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 178/603 (29%), Positives = 274/603 (45%), Gaps = 137/603 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED-DGTAKKKFKKNKQVLKGQNKA 63
GVA IK E++V S+ V D +E E D +G +K + NK+ KGQN
Sbjct: 29 GVAAIKAEYLV----PTSSLTVVEYDD----DEAEGGDREGESKPR---NKKKQKGQNHK 77
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + + +D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF
Sbjct: 78 RD---LKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFE 134
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
GYCP GI CR+ SH + ++K+ D ++ K T N VN + + + +++K Y
Sbjct: 135 ALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKY 192
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
F+ S+ + K DS++ N ++ K +EE K
Sbjct: 193 FFKISQPVIK-----------------YLDSRI---------QNEANLAKQKEERKDNEA 226
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
+ +EKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 227 SYVEA-PFTIAEKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQG 285
Query: 300 SPQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
EWAL K H SE FGVQ+ + + + V +++N GCPI+ +YK
Sbjct: 286 HNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYK 345
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
QG GS LL + + L G N D+ + I K+G +
Sbjct: 346 QGQGSALLDQPSKLLRILSGMN----------------ASSGDIPVTVKIRTGIKEGKNT 389
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
+ N++ V+ N A+ ITLHGR+
Sbjct: 390 AV----NLVSRVLEEGN---------------------------------AAAITLHGRS 412
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRY+K+ADW+YI + + ++W + +E + + D
Sbjct: 413 RQQRYSKEADWNYIAEVGTVV--------------KNWNE-------QQKEDKEGRDRD- 450
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P GNGD+ S+ED+ E + + I VM+ RGALIKPWIF+E++ ++
Sbjct: 451 -----------PVYFVGNGDVYSHEDWYEHV-NTDGIDSVMVARGALIKPWIFEEVEAQQ 498
Query: 598 LFD 600
D
Sbjct: 499 YLD 501
>gi|238882041|gb|EEQ45679.1| hypothetical protein CAWG_04010 [Candida albicans WO-1]
Length = 613
Score = 211 bits (537), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 178/603 (29%), Positives = 274/603 (45%), Gaps = 137/603 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED-DGTAKKKFKKNKQVLKGQNKA 63
GVA IK E++V S+ V D +E E D +G +K + NK+ KGQN
Sbjct: 29 GVAAIKAEYLV----PTSSLTVVEYDD----DEAEGGDREGESKPR---NKKKQKGQNHK 77
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + + +D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF
Sbjct: 78 RD---LKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFE 134
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
GYCP GI CR+ SH + ++K+ D ++ K T N VN + + + +++K Y
Sbjct: 135 ALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKY 192
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
F+ S+ + K DS++ N ++ K +EE K
Sbjct: 193 FFKISQPVIK-----------------YLDSRI---------QNEANLAKQKEERKDNEA 226
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
+ +EKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 227 SYVEA-PFTIAEKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQG 285
Query: 300 SPQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
EWAL K H SE FGVQ+ + + + V +++N GCPI+ +YK
Sbjct: 286 HNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYK 345
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
QG GS LL + + L G N D+ + I K+G +
Sbjct: 346 QGQGSALLDQPSKLLRILSGMN----------------ASSGDIPVTVKIRTGIKEGKNT 389
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
+ N++ V+ N A+ ITLHGR+
Sbjct: 390 AV----NLVSRVLEEGN---------------------------------AAAITLHGRS 412
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRY+K+ADW+YI + + ++W + +E + + D
Sbjct: 413 RQQRYSKEADWNYIAEVGTVV--------------KNWNE-------QQKEDKEGRDRD- 450
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P GNGD+ S+ED+ E + + I VM+ RGALIKPWIF+E++ ++
Sbjct: 451 -----------PVYFVGNGDVYSHEDWYEHV-NTDGIDSVMVARGALIKPWIFEEVEAQQ 498
Query: 598 LFD 600
D
Sbjct: 499 YLD 501
>gi|402221544|gb|EJU01613.1| FMN-linked oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 685
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 242/552 (43%), Gaps = 143/552 (25%)
Query: 66 PTFVTKP----------EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
P +VT P E CP ++ CKY KC+F+ D ++ PE+ +
Sbjct: 147 PPYVTIPAEPDNDTGRREGIICPEYRELG---ECKYAFKCRFLAD---HVEPIPENEEDH 200
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE-VRQDL 174
V L+ Y D N I +E + +N LA+ + +DL
Sbjct: 201 LGVGLRILY--------------DANQAEIAREKF----------QELNRLASPGLLKDL 236
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
R Y KS++ +++ + +E E+ + + + Q E
Sbjct: 237 RTKKYPTPKSDEYLAYLATLRDDAPTAGGRGAATANADVESAEQ-TMGDQSKIPRGQHEH 295
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
P DT + ++ EK ++ W+ + YL+PL+TVGNLPFRRLC +GA ITC+EM +A
Sbjct: 296 HEEPQ-DTPDVPMRPVEKLRLHWKNQTYLAPLSTVGNLPFRRLCVDYGASITCAEMGLAA 354
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIE 353
LL +S EW+L++RH SE +FG QL GN P L +++ + VDFVD+N GCPI+
Sbjct: 355 SLLNASKAEWSLVRRHPSEGIFGTQLAGNKPGTLVAAAEVISRECPNVDFVDLNCGCPID 414
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
++K G+GS LL + + L G N + L E P+ +
Sbjct: 415 LVFKSGAGSALLDQQSKLSKILVGMN--------RTLGE------------TPLTIKLRT 454
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT- 472
G G R H+ +H+ WG S +T
Sbjct: 455 GVKDG---------------------------RNLAHRLMPRLHS-------WGVSAVTA 480
Query: 473 ---LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
+HGR+R+QRY+K ADWDYI+ C +
Sbjct: 481 SWRIHGRSRQQRYSKLADWDYIKTCVDVLR------------------------------ 510
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
+AD + SP P++G GD+ S + Y E +++S + GVM+ RGALIKPWI
Sbjct: 511 --ASEAD--------EGLSPIPIFGGGDVYSSQGYWECVEQS-GVDGVMVARGALIKPWI 559
Query: 590 FQEIKEKKLFDI 601
F EIKE++ +DI
Sbjct: 560 FTEIKERREWDI 571
>gi|340924292|gb|EGS19195.1| hypothetical protein CTHT_0058200 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 715
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 184/642 (28%), Positives = 286/642 (44%), Gaps = 140/642 (21%)
Query: 5 GVAKIKQEFIV----------EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNK 54
GVA IK+E+++ D +V++ + D E+ +DG K+K
Sbjct: 53 GVAPIKEEYLIFPSGHGKGSETDEFEVVADDAAEGRDAHD-EQQGTGNDGKRKRK----- 106
Query: 55 QVLKGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE- 110
GQNK R F C +TCK G++C +HD ++K +P+
Sbjct: 107 ---GGQNKDRDFGIFGDSHRLCNSVAWSPEFSPRTCKQGDRCNALHDLRKYLKEGRRPDL 163
Query: 111 -DISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
+C V+ ++G CP G C F SH+ E + +ED E T N ++ ++
Sbjct: 164 KTFDGKCPVWEKYGKCPSGWRCLFVRSHMQE----VTREDGRTELMLTERNSDQGVVEHQ 219
Query: 170 VRQ--DLRKHTYN-FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDD 226
Q ++R N S KI K K E D ++D+++ + + D+
Sbjct: 220 DEQTGEVRPGVVNIMPTSIKIDLSRKRVKMEKSDEYLEWLSKDTELYRKHYHKSKDDADE 279
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADI 285
+ + + P +K SEK+++ + + L+PLTTVGNLPFRRLC + GA +
Sbjct: 280 LNDYRAQYVEPP--------LKPSEKRRLYFGRETPILAPLTTVGNLPFRRLCVELGAQL 331
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVD 345
T SEMA++ LL+ +W L++ HESE +
Sbjct: 332 TYSEMALSMPLLQGQNADWTLMRAHESE---------------------------ITPPR 364
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLG 404
++ PI Y+ R FG Q+ N P++ K T+ L + + +D+N G
Sbjct: 365 IDPKAPIVQGYEH-------SRDLKFGAQITANVPWLAIKATEALSRFLPHLRLIDLNCG 417
Query: 405 CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF 463
CP++ +YK G+GS L+ + L+ +I MN VS +PIT K R G+
Sbjct: 418 CPVDAVYKTGAGSALMDAPSKLERMIRGMNTVSGEVPITTKIRMGV-------------- 463
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
R+ R+T Q +E+ A L S D + G + +TLH
Sbjct: 464 --------------RDDRHTAQK---LVERLA-LGSEDMRDVTGAP------GCAAVTLH 499
Query: 524 GRTREQRYTKQADWDYIEKCAQLC-----------------------SPAPLY--GNGDI 558
GRTR+QRYT+ ADW YI +CA L + +Y GNGD+
Sbjct: 500 GRTRQQRYTRAADWGYIAECAALIKQFNEKADSLADTVRETDERTLPNGGHMYFIGNGDV 559
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
S+EDY L ++ + GVMIGRGAL+KPWIF+EI++ + D
Sbjct: 560 YSHEDYFRHLDEA-KVDGVMIGRGALVKPWIFEEIEKGQYLD 600
>gi|224160922|ref|XP_002199744.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like,
partial [Taeniopygia guttata]
Length = 435
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 140/240 (58%), Gaps = 55/240 (22%)
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GP+ D D+ K++ EKKK++ QGKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T L
Sbjct: 250 GPLTDEDVTKLRPCEKKKLEIQGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNL 309
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ EWAL+KRH +ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +Y
Sbjct: 310 LQGQSSEWALLKRHHTEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVY 369
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K+G G L+ R+N F EQ+V
Sbjct: 370 KKGGGCALMTRSNKF--------------------EQIVRG------------------- 390
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476
MN V +P+TVK RTG+ + N+ H +P+ R+WGAS++T+ GR
Sbjct: 391 ----------------MNSVLDVPVTVKIRTGVQEKVNVAHKLIPRIREWGASMVTVRGR 434
>gi|443697303|gb|ELT97828.1| hypothetical protein CAPTEDRAFT_165435 [Capitella teleta]
Length = 316
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 160/314 (50%), Gaps = 105/314 (33%)
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MA+AT LL++S EWAL++R SED+FGVQ+CG P +TK Q+L ++ VDF+D+N G
Sbjct: 1 MAIATNLLQASASEWALVRRDPSEDIFGVQICGAYPDSMTKTAQMLCNEIDVDFIDINCG 60
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +Y++G G L+ R F
Sbjct: 61 CPIDLVYQKGEGCALMSRTGRF-------------------------------------- 82
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+I Q + + M+ +P+TVK RTGI+ D NI H +PK RDWG S
Sbjct: 83 -------------QHICQGMTSVMD----IPLTVKIRTGIYDDKNIAHQLVPKLRDWGVS 125
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
++TLHGR+REQRYT+ ADW YI+KC++
Sbjct: 126 MVTLHGRSREQRYTRLADWKYIDKCSR--------------------------------- 152
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
L P P++GNGDI+S+EDY + +++ +++G MI RGALIKPWI
Sbjct: 153 ----------------LADPMPMFGNGDIMSFEDYNFA-RENSNVAGTMIARGALIKPWI 195
Query: 590 FQEIKEKKLFDIYA 603
F EIKE++ +DI A
Sbjct: 196 FTEIKEQRHWDISA 209
>gi|367018684|ref|XP_003658627.1| hypothetical protein MYCTH_2294623 [Myceliophthora thermophila ATCC
42464]
gi|347005894|gb|AEO53382.1| hypothetical protein MYCTH_2294623 [Myceliophthora thermophila ATCC
42464]
Length = 736
Score = 209 bits (531), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 179/650 (27%), Positives = 281/650 (43%), Gaps = 139/650 (21%)
Query: 5 GVAKIKQEFI--VEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK E++ V + + V + D + + + T K ++ KGQNK
Sbjct: 57 GVAPIKAEYLIFVPGQTGKPAEDEVADDDAAEGQRAREPQEATQTSKKDGKRKKQKGQNK 116
Query: 63 ARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCY 117
R TF C + CK+G++C +HD ++K +P+ +C
Sbjct: 117 DRDFGTFSDAKRLCNSVAWTPEFSPRPCKHGDRCNALHDLRQYLKEGRRPDLATFGGKCP 176
Query: 118 VFLQHGYCPMGIACRFGSSHLDE----NGGN--IVKEDVLKEWK---------------- 155
V+ ++G CP G C F SH+DE +G + ++ E+ K+
Sbjct: 177 VWAKYGKCPSGWRCLFVRSHMDEIKHTDGRSELVLLENTTKQSPDGGKGEKDEGKKEEGE 236
Query: 156 -------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQ 208
V VN++ ++ DL K EKS++ + +K+ + T K +
Sbjct: 237 EEEEGEMGDVKPGVVNVVPARIKFDLAKKRLRLEKSDRYLEW--LAKDTERLTRHYHKQK 294
Query: 209 DSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLT 267
+ +TD+ + + P +K SEK++I + + L+PLT
Sbjct: 295 N-------------DTDEANDYRAQYVEPP--------LKPSEKRRIYFGRETPVLAPLT 333
Query: 268 TVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYV 327
T GNLPFRRLC + GA +T SEMA+ LL+ +W L++ HE E
Sbjct: 334 TQGNLPFRRLCVELGAQVTYSEMALGLPLLQGQKADWTLMRAHEIET------------- 380
Query: 328 LTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL----FGVQLCGNNPYVL 383
P F+ G+GS + N FG Q+ + P+V
Sbjct: 381 ----------------------TPPRFV--PGNGSIVRDYDNSRDLKFGAQIAASVPWVA 416
Query: 384 TKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPI 441
K + L + + +D+N GCP++ +YK G+GS LL + L+ +I MN VS +PI
Sbjct: 417 IKAAEALSRFLPHLRLIDLNCGCPVDAVYKSGAGSALLDAQSKLERMIRGMNAVSGEVPI 476
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASL-----------ITLHGRTREQRYTKQADWDY 490
T K R G+ D + H + + G + +TLHGRTR+QRYTK ADW Y
Sbjct: 477 TAKIRMGVRDDRHTAHKLVERLALGGEDMRSVVGAPGCAAVTLHGRTRQQRYTKAADWGY 536
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I +CA L + N+ + R+ S + G+
Sbjct: 537 IAECAALIKQFNDKADSLADTIREADESTLPNGGKMY----------------------- 573
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ DY E + K+ + VMIGRGA++KPWIF+EI++ + D
Sbjct: 574 -FLGNGDCYSHVDYFEHIDKA-KVDSVMIGRGAIVKPWIFEEIEKGQYLD 621
>gi|342182242|emb|CCC91721.1| putative tRNA-dihydrouridine synthase 3 [Trypanosoma congolense
IL3000]
Length = 534
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 108/372 (29%)
Query: 234 TKSGPVL---DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEM 290
T+SG V+ +TD +N+ +++ + KL L+PLTTVGNLPFRR+CK +GADIT SEM
Sbjct: 144 TRSGTVIKVSNTDETLRENAARREALFANKLVLAPLTTVGNLPFRRVCKGYGADITISEM 203
Query: 291 AVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLG 349
A+ L + EW+L++RH SED+FG+Q+ + P +T ++E + + DFVD+N G
Sbjct: 204 AIVHSLNQLRKSEWSLLRRHSSEDIFGLQIAVSRPQDAITWAQAIVESEFSYDFVDINCG 263
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CP++ + G G GL +R GN
Sbjct: 264 CPVDRVVLSGCGCGLWERK--------GNR------------------------------ 285
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
LQ N++QS+I + S P+T+K R G ++ ++H ++ + WGA+
Sbjct: 286 ----------LQ--NVVQSLI----KHQSRPVTIKCRIGPSEETPVLHKYISDYEGWGAA 329
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
+T+HGR+R+QRYT A+W YI+ CA S
Sbjct: 330 AVTIHGRSRKQRYTNLANWMYIDDCASQTS------------------------------ 359
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
P+ GNGDI SYED E + IS MIGRGALIKPWI
Sbjct: 360 --------------------LPVIGNGDIFSYEDILERRTQYKHISSFMIGRGALIKPWI 399
Query: 590 FQEIKEKKLFDI 601
F+EIK ++++DI
Sbjct: 400 FEEIKSERVWDI 411
>gi|255078812|ref|XP_002502986.1| predicted protein [Micromonas sp. RCC299]
gi|226518252|gb|ACO64244.1| predicted protein [Micromonas sp. RCC299]
Length = 361
Score = 208 bits (529), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 181/353 (51%), Gaps = 101/353 (28%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
KK+D +GKLY++PLTTVGNLPFRR+C GAD+T SEMA+A+ +LK E AL++RH S
Sbjct: 1 KKLDLRGKLYVAPLTTVGNLPFRRVCVALGADVTISEMAMASNILKGERSELALLRRHPS 60
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E LFGVQ+CG +P ++ +C + L+ + DFVDVN+GCPI+ + +G+GS LL+
Sbjct: 61 ERLFGVQVCGGHPDLMARCGEFLDNDVDCDFVDVNMGCPIDGVCAKGAGSTLLR------ 114
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+ L + +L++ SG +QR
Sbjct: 115 ------DEVGLARMKKLVQAM-----------------------SGSMQRT--------- 136
Query: 433 MNEVSSLPITVKTRTGIHKDNN--IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
P+T+K R G D + + H+ + R WGA+ TLHGRTR QRY++ ADW Y
Sbjct: 137 -------PLTIKVRMGYDDDPSKYVAHDVLKDARAWGAAAATLHGRTRAQRYSRLADWRY 189
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I +CA + + S
Sbjct: 190 IRRCAAVAA-----------------------------------------------PSGL 202
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
PL GNGD+ S++DY ++ +++ MIGRGALIKPW+ EIKE++++DI A
Sbjct: 203 PLVGNGDVFSFKDYERHMRGG-TLATCMIGRGALIKPWVLTEIKERRVWDISA 254
>gi|225677569|gb|EEH15853.1| tRNA-dihydrouridine synthase B [Paracoccidioides brasiliensis Pb03]
Length = 795
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 181/641 (28%), Positives = 280/641 (43%), Gaps = 125/641 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-AKKKFKKNKQVLKGQNKA 63
GVA IK+E+++E + D E + + + K + K+ K+ + N+
Sbjct: 69 GVAPIKKEYLIEISPGTTQLPPGTVPDDDAAEAAKHHEQASDTKSRAKRAKKGGQNVNRK 128
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVF 119
G + K + C C +G CKF HD ++K K D+ C V+
Sbjct: 129 FGRSQDEK-QLCQTVAYHSEFSPDPCPWGTSCKFEHDIRKYLKEYKRADLDAFGGVCPVW 187
Query: 120 LQHGYCPMGIACRFGSSHLDENGGNIVKEDV--------LKEWKNTVG---NKTVNMLAN 168
G CP G CRF SH+ E ++++ +K +T G + VN+++
Sbjct: 188 EAKGRCPAGWKCRFVGSHMTERETKDGRKELALVEDFTQMKNPASTNGIGIDGAVNVVST 247
Query: 169 EVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
E + L K Y K++ +K SK K+ +NQD E E PN D
Sbjct: 248 EDKLSLAKRRYKTPKADSFTSWLDKVSKEVEKNLHG--RNQD----EAAPEPEKPNGRDA 301
Query: 228 IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADIT 286
+++E + T+ + SEK+++ + + L+PLTT GNLPFRRLC GA +T
Sbjct: 302 SDLRDEKEENRARYTEPPFLP-SEKRRVYFGPETPVLAPLTTQGNLPFRRLCVDLGAQLT 360
Query: 287 CSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNP 325
SEMA++ L++ S EWAL+K HESE L FG Q+ GN P
Sbjct: 361 YSEMAMSMNLVQGSKSEWALMKAHESETLPPTVNPNQTIVKDYDNSRDLKFGAQITGNKP 420
Query: 326 YVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
+V K T+ L Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 421 WVALKATEALTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL----------- 467
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC---MNEVSSL 439
E+M+ V+ PI + G+ +++ ++ +E+
Sbjct: 468 ---------EKMLRGMNAVSGEIPITAKIRMGTKDSNPNATKLIERLVLGGVESHEIGQG 518
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P G + ITLHGR+R+QRY++QADW YI +CA L
Sbjct: 519 PA-------------------------GVAAITLHGRSRQQRYSRQADWGYIGQCAALVK 553
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
R N I++ K+AD Y ++ GNGD
Sbjct: 554 RLNEQINSGTDT--------------------AKEADARYQSSAGKVF----FLGNGDCY 589
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
S++DY ++ S + VMI RGAL+KPWIF+EI + + D
Sbjct: 590 SHDDYFNGIRNS-GVDTVMIARGALMKPWIFEEISKGQYLD 629
>gi|240274641|gb|EER38157.1| tRNA dihydrouridine synthase 3-like protein [Ajellomyces capsulatus
H143]
Length = 741
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 181/645 (28%), Positives = 283/645 (43%), Gaps = 126/645 (19%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + +D G AK+K ++ K+ GQN
Sbjct: 65 GVAPIKKEYLIEVSQSTGQASPRAIADDDGAEAAKHHEQDGGGAKQKGRREKK--GGQNI 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
R TF ++ C C +G+ CKF HD ++K+ K D+
Sbjct: 123 KR--TFGRSQDEKQLCQTVAYYPEFSPNACPFGKSCKFEHDIRKYLKNYKRADLDTFGGV 180
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGNK-----TVN 164
C V+ G CP G CRF SH+ E ++ ED + T N VN
Sbjct: 181 CPVWEAKGRCPSGWKCRFVGSHMAERETEDGRKELVLVEDASRMKHPTSANGIEVDGVVN 240
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
++ E + L K Y K++ + S+ ++ +++ + ++ T +
Sbjct: 241 VVTTEAKLSLAKKRYQTPKADSYTTWIDTVSREVERNLHGRIQDEPASAPGNADDQGTSD 300
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+ D ++E + + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 301 SKD----EKEDNRARYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLG 353
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 354 AQLTYSEMAMSMSLVQGSKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQIT 413
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V + T+ + Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 414 GNKPWVALRATEAMTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL------- 464
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
E+M+ V+ PI + G+ +++ +I M V S
Sbjct: 465 -------------EKMLRGMNAVSGEIPITVKIRMGTKDSNPTATKLIERLI--MGGVES 509
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
I G + ITLHGR+R+QRY++QADW+YI +CA L
Sbjct: 510 HEIGRGPA--------------------GVAAITLHGRSRQQRYSRQADWEYISQCAALV 549
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R N D G I K+ D ++ GNGD
Sbjct: 550 KRLNEQT--------DIGTDTI------------KEPDARDQPSAGKVF----FLGNGDC 585
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+EDY ++KS + VM+ RGAL+KPWIF+EI++ + D A
Sbjct: 586 YSHEDYFSGIQKS-GVDTVMVARGALVKPWIFEEIEKGQYLDKSA 629
>gi|389632889|ref|XP_003714097.1| tRNA-dihydrouridine synthase 3 [Magnaporthe oryzae 70-15]
gi|187471055|sp|A4RLF4.1|DUS3_MAGO7 RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|351646430|gb|EHA54290.1| tRNA-dihydrouridine synthase 3 [Magnaporthe oryzae 70-15]
gi|440474257|gb|ELQ43009.1| tRNA-dihydrouridine synthase 3 [Magnaporthe oryzae Y34]
gi|440481190|gb|ELQ61800.1| tRNA-dihydrouridine synthase 3 [Magnaporthe oryzae P131]
Length = 739
Score = 206 bits (524), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 184/643 (28%), Positives = 282/643 (43%), Gaps = 142/643 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-----AKKKFKKNKQVLKG 59
G A IK E++VE V + R + +DD ++ K ++ KG
Sbjct: 77 GQAPIKAEYLVE----------VIHNNGRDARDEGPDDDAAEGRTASEPSGKVARKGKKG 126
Query: 60 QNKARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KP--EDI 112
QN+AR F + C L D + C +G++C HD ++ +P E
Sbjct: 127 QNQAR--DFGRSADSIRLCNSRMLSDEFSPKHCSFGDRCNLSHDLRKYLAEGRRPDLETF 184
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW---------KNTVGNKT- 162
+C +F HG+C G C F SH++E + +ED KE K G +
Sbjct: 185 GGKCPIFEVHGWCNAGWKCLFVRSHMEE----VEREDGRKELVLLRDLTRSKKPEGEASE 240
Query: 163 ------VNMLANEVRQDLRKHTYNFEKSEKICK-----ENKASKNENKDTDDCCKNQDSK 211
VN +A+ + + + + +S + K N + N D+ K ++ +
Sbjct: 241 DGPYGVVNTVASVDKHRMGRSKVDLSRSVEYSKWMDQYTNLVKQLHNARVDE--KKREEE 298
Query: 212 VIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVG 270
+ E R P K SEK+++ + + L+PLTT G
Sbjct: 299 LGELRATFVEP-----------------------PFKPSEKRRLYFGRETPVLAPLTTQG 335
Query: 271 NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330
NLPFRRLC GA T SEMA+A +++ EWAL+K HESE T+
Sbjct: 336 NLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMKAHESE---------------TR 380
Query: 331 CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
L E +A + PI +Y R FG Q+ ++ + K + L
Sbjct: 381 PPTLSPETLASN-------SPIVKVYDN-------SRDLRFGAQISASSHPLAIKAAECL 426
Query: 391 EEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTG 448
+ + +D+N GCPI+ IYK G+GS LL++ N ++ +I MN VS +PIT K R G
Sbjct: 427 TTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVPITCKLRIG 486
Query: 449 IHKDNNIIHNFM-------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+ +++ + + P FR+ G + ITLHGRTR+QRY K ADW YI +CA L
Sbjct: 487 VKENHPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWGYIAECAAL 546
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+RD L ++ D + +++ GNGD
Sbjct: 547 IQ-----------SYRDKRDELTDT---------VREPDASTLAPSSEVF----FLGNGD 582
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
S+ DY +++ +S + VMIGRGALIKPW+F+EI + D
Sbjct: 583 CYSHADYYKAIDES-HVDTVMIGRGALIKPWVFEEIAAGQYLD 624
>gi|50303455|ref|XP_451669.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74637047|sp|Q6CWM0.1|DUS3_KLULA RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|49640801|emb|CAH02062.1| KLLA0B03069p [Kluyveromyces lactis]
Length = 665
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 167/564 (29%), Positives = 254/564 (45%), Gaps = 116/564 (20%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ-- 115
+GQNK R V + F+ + ++ TC + KC++VHD ++ K +I +
Sbjct: 85 RGQNKNRDNRQVREQHALCSKFV--TNVDATCSFDTKCRYVHDVREYLSKKAPEIKTEFF 142
Query: 116 --CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTV-GNKTVNMLANEVRQ 172
C V+ G+CPMG C F SSH + + + E K N +N + E +
Sbjct: 143 PICPVWQSLGHCPMGYKCCFLSSHCNMETLELKDLYEVDERKKLYEANHEINHIDGERKY 202
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV-IEGREEINTPNTDDVIKVQ 231
DL K ++F KS+ I + A + EN+D + K ++ E+ N D+ + Q
Sbjct: 203 DLIKRRFSFTKSDYILEIIDAMQQENRDLMNTSKGSETTTDANAGEDAN----DEKVSFQ 258
Query: 232 EETKSGPV-----------LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKK 280
K + L + EK+K+D K +SPLTTVGNLP+RRL +K
Sbjct: 259 ATEKQNQLTEKRERQRELYLKYHDTRFFAQEKRKLDLHHKKIVSPLTTVGNLPYRRLMRK 318
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQ 338
GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 319 LGADVTYSEMALAVPLIQGTNSEWALPKAHCSEFPGFGVQIACSKTWQAAKAAEALAANV 378
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
V +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 379 TGVSEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC------------ 414
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIH 457
+ MN VS+ +P+TVK RTG + + I
Sbjct: 415 -------------------------------LNGMNYVSNDIPVTVKIRTGTREGHPIAL 443
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+ + + + ITLHGRTR+QRYTK ADWDY+ + A
Sbjct: 444 SITKRLVLETDVAAITLHGRTRQQRYTKSADWDYVGEVAN-------------------- 483
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
++ T +E + + D I+ GNGD ++ED+ + L ++ ++
Sbjct: 484 -AVRTYEAERQENKNLR--DGQKIQ----------FVGNGDCNNWEDWYKHL-ENKNMDS 529
Query: 577 VMIGRGALIKPWIFQEIKEKKLFD 600
VM+ RGALIKPWIF+E+ ++ D
Sbjct: 530 VMVARGALIKPWIFEEVDAQQYMD 553
>gi|146422829|ref|XP_001487349.1| hypothetical protein PGUG_00726 [Meyerozyma guilliermondii ATCC
6260]
Length = 607
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 166/601 (27%), Positives = 266/601 (44%), Gaps = 135/601 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK EFIVE+ VN+ D + E K+ K + + + + R
Sbjct: 25 GIAPIKPEFIVENPSVPADDRYVNDDDAEAGDRNGEEKGKKKKRGQNKKRDMRQQHEEVR 84
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
C L D + TC++G E C+ HD ++ +K DI C VF G
Sbjct: 85 -----------LCSSLLDPSNPGTCRFGPEHCRSTHDVTTYLAAKAPDIDGVCPVFKSIG 133
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YCP G+ CR+ +SH ++ G + ++ + + G VN ++ E + L+K Y FE
Sbjct: 134 YCPAGLKCRWLNSHYED--GKLKRDQSQIDAYASSGQGEVNKISTEAKLALQKKKYLFEV 191
Query: 184 SEKICK--ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLD 241
S+ + K + + +EN I REE N V P
Sbjct: 192 SDNVIKYLDLQVQSDEN--------------IAKREEAKENNASYV--------EAP--- 226
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
K +EKKK+D +G +SPLTTVGNLP+RRL K GAD+T SEMA++ LL+++
Sbjct: 227 -----FKIAEKKKLDLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSLPLLQATN 281
Query: 302 QEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQG 359
EWAL K H SE FGVQ+ + + K +++ +E V +++N GCPI+ +Y+QG
Sbjct: 282 SEWALPKAHSSEYPGFGVQIATSKHWAAAKAAEVIYKETTHVSELNLNCGCPIDLLYRQG 341
Query: 360 SGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
GS L+++ L G N + P+ + G+
Sbjct: 342 QGSALMEQPARLLRILKGMNA--------------------SSGDIPVTVKIRTGTKDNK 381
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
++++ V+ N+V+++ + HGR+R+
Sbjct: 382 NTAKSLVERVL-AENDVAAITL--------------------------------HGRSRQ 408
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
QRYTK ADW+YI++ + + NN K+ D
Sbjct: 409 QRYTKDADWEYIKEVGAVVTEWNN----------------------------KKEED--- 437
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
K + + GNGD+ ++ED+ ++ + + VM+ RGALIKPWIF+E++ ++
Sbjct: 438 --KESSETNRTNFVGNGDVFTHEDWYNAV-NTEGVDSVMVARGALIKPWIFEEVEAQQYL 494
Query: 600 D 600
D
Sbjct: 495 D 495
>gi|294892129|ref|XP_002773909.1| tRNA-dihydrouridine synthase, putative [Perkinsus marinus ATCC
50983]
gi|239879113|gb|EER05725.1| tRNA-dihydrouridine synthase, putative [Perkinsus marinus ATCC
50983]
Length = 606
Score = 206 bits (523), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 154/527 (29%), Positives = 232/527 (44%), Gaps = 156/527 (29%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQC-YVFLQHGYCPMGIACRFGSSHLD--ENGGNI 145
C +G++CKF HD + KP+D+ +C + L HG CP G+ CR SH E+G +
Sbjct: 99 CAFGDECKFNHDVKAYWAEKPDDLPGECPFPSLLHGRCPFGLNCRMAGSHTKVLEDGSPV 158
Query: 146 VKEDVLKEWKNTVG----------NKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASK 195
D++ G + +N +++R DLR Y F S KA+
Sbjct: 159 ---DIISTHGEATGPTDGPGEELDSLVLNSTTHQLRLDLRGKKYVFPGS-------KAAL 208
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
N+ KV+E + GPV +K + K I
Sbjct: 209 NK-------------KVVE--------------------RIGPV--GPGVKERVPFSKLI 233
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
+ + L+PLTTVGNLPFRRLC G ++T SEMA+A LLK + E AL+K+H E +
Sbjct: 234 HGRPPM-LAPLTTVGNLPFRRLCVSLGCEVTVSEMALAESLLKGNRAEHALLKKHPDEKI 292
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FG+Q+ G P ++++C ++L +M DF+D+N+GCP+E ++K+G+GS L+ R
Sbjct: 293 FGIQVAGGFPDMMSRCAEMLCREMDDFDFLDINMGCPLEGLHKKGAGSALMTR------- 345
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
G V++ + V D NL
Sbjct: 346 -LGKAEGVMSSMAK------VCHAYDKNL------------------------------- 367
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
TVK RT + N++ + G + LHGRT +QRY++ ADW + KC
Sbjct: 368 -------TVKIRTAHYGQNHVYDKVAARAVSSGVDGVVLHGRTAQQRYSRPADWTFHTKC 420
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ D+ + N + PL G
Sbjct: 421 R--TAMDSAVPGNAV-----------------------------------------PLVG 437
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GDI+ + + E + ++P + G+MIGRGALIKPWIF EIKE + +DI
Sbjct: 438 CGDIIDWREAIERM-ETPGVEGLMIGRGALIKPWIFTEIKEHRDWDI 483
>gi|402586955|gb|EJW80891.1| dihydrouridine synthase domain-containing protein [Wuchereria
bancrofti]
Length = 461
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 210/497 (42%), Gaps = 159/497 (31%)
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA 167
KP DI CY F Q G CP ACRF ++H N I K N KT+N +
Sbjct: 3 KPPDIGANCYNFDQRGVCPFSFACRFANAH-TSNAKQITKS------PNVSYKKTLNANS 55
Query: 168 NEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
++ LRK Y+F KS++ E + C +++ I+ RE
Sbjct: 56 VPLQIALRKRKYDFGKSDQAVAELSQTLG--------CMERENLKIDMRE---------- 97
Query: 228 IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITC 287
GKLYL+PLTT+GNLPFRRLC +GA+ITC
Sbjct: 98 -----------------------------LSGKLYLAPLTTLGNLPFRRLCVDFGAEITC 128
Query: 288 SEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVN 347
SEM + T+ L + EW+L+KRH +E FG+QL G P + + Q++ E +DF+D+N
Sbjct: 129 SEMGICTKYLNGTSSEWSLLKRHPNEKYFGIQLAGGYPDSMCRAAQIIAENEQIDFIDIN 188
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ I ++G G L R+N +L+E + V N P+
Sbjct: 189 CGCPIDLINEKGGGCSLALRSN------------------KLVEVMKTMSKVIGN--TPL 228
Query: 408 EFIYKQGSGSGL-LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW 466
+ G G+ + I + V C ++ IT+ R+
Sbjct: 229 TLKLRTGIKEGVYIAHQTISKVVEHCPPQL----ITLHPRS------------------- 265
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526
+ QRYTK ADW Y +C++ C
Sbjct: 266 -----------KAQRYTKLADWSYTRQCSEACQN-------------------------- 288
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
P + +GD+LSY DY E L++ P ++G+MIGRGAL+K
Sbjct: 289 -----------------------VPFWASGDVLSYTDYYEKLERYP-VNGIMIGRGALMK 324
Query: 587 PWIFQEIKEKKLFDIYA 603
PWIF EIKE + +DI A
Sbjct: 325 PWIFTEIKECRHWDIAA 341
>gi|226295293|gb|EEH50713.1| tRNA-dihydrouridine synthase [Paracoccidioides brasiliensis Pb18]
Length = 897
Score = 205 bits (521), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 181/644 (28%), Positives = 280/644 (43%), Gaps = 125/644 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-AKKKFKKNKQVLKGQNKA 63
GVA IK+E+++E + D E + + + K + K+ K+ + N+
Sbjct: 222 GVAPIKKEYLIEISPGTTQLPPGTVPDDDAAEAAKHHEQASDTKSRAKRAKKGGQNVNRK 281
Query: 64 RGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVF 119
G + K + C C +G CKF HD ++K K D+ C V+
Sbjct: 282 FGRSQDEK-QLCQTVAYHSEFSPDPCPWGTSCKFEHDIRKYLKEYKRADLDAFGGVCPVW 340
Query: 120 LQHGYCPMGIACRFGSSHLDENGGNIVKEDV--------LKEWKNTVG---NKTVNMLAN 168
G CP G CRF SH+ E ++++ +K +T G + VN+++
Sbjct: 341 EAKGRCPAGWKCRFVGSHMTERETKDGRKELALVEDFTRMKNPASTNGIGIDGAVNVVST 400
Query: 169 EVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
E + L K Y K++ +K SK K+ +NQD E E PN D
Sbjct: 401 EDKLSLAKRRYKTPKADSFTSWLDKVSKEVEKNLHG--RNQD----EAAPEPEKPNGRDA 454
Query: 228 IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADIT 286
+++E + T+ + SEK+++ + + L+PLTT GNLPFRRLC GA +T
Sbjct: 455 SDLRDEKEENRARYTEPPFLP-SEKRRVYFGPETPVLAPLTTQGNLPFRRLCVDLGAQLT 513
Query: 287 CSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNP 325
SEMA++ L++ S EWAL+K HESE L FG Q+ GN P
Sbjct: 514 YSEMAMSMNLVQGSKSEWALMKAHESETLPPTVNPNQTIVKDYDNSRDLKFGAQITGNKP 573
Query: 326 YVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
+V K T+ L Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 574 WVALKATEALTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL----------- 620
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC---MNEVSSL 439
E+++ V+ PI + G+ +++ ++ +E+
Sbjct: 621 ---------EKILRGMNAVSGEIPITAKIRMGTKDSNPNATKLIERLVLGGVESHEIGQG 671
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P G + ITLHGR+R+QRY++QADW YI +CA L
Sbjct: 672 PA-------------------------GVAAITLHGRSRQQRYSRQADWGYIGQCAALVK 706
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
R N I++ K+AD Y ++ GNGD
Sbjct: 707 RLNEQINSGTDT--------------------AKEADARYQSSAGKVF----FLGNGDCY 742
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ DY ++ S + VMI RGAL+KPWIF+EI + + D A
Sbjct: 743 SHGDYFNGIRDS-GVDTVMIARGALMKPWIFEEISKGQYLDKSA 785
>gi|346971752|gb|EGY15204.1| tRNA-dihydrouridine synthase [Verticillium dahliae VdLs.17]
Length = 719
Score = 204 bits (520), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 183/653 (28%), Positives = 279/653 (42%), Gaps = 178/653 (27%)
Query: 4 SGVAKIKQEFIV-----EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLK 58
+ +A IK EF++ E +V + E + E+ E D + K++K+ K
Sbjct: 82 AAIAPIKAEFLIPRSEIEKQQEVPIDDDAAEGRGQDQEQQERGDHPRRDTRDKRDKKKAK 141
Query: 59 GQNKAR-----GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM----KSKP 109
GQNK R TF Y P + C+YG++C+ HD +M +
Sbjct: 142 GQNKERTFGNFDDTFRLCNSRAYYPEFS----PRECRYGDRCQLSHDLRKYMEEGRRGDV 197
Query: 110 EDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
E +C VF HG CP G CRF SH+ GG G VN++ N+
Sbjct: 198 ETFGGKCPVFESHGRCPSGWKCRFVRSHM--KGGR-------------AGGWPVNVINNK 242
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
V+ D+ + N E+ +K +E K TD+ ++ + E E++
Sbjct: 243 VKIDVSRRRVNMEEVDKYIS---WMNHETKLTDELHHRRNRQTTEDSEDLRA-------- 291
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
+ + P +K SEK+K+ + + L+PLTT GNLPFRRL + GA++T S
Sbjct: 292 ---QYREAP--------LKPSEKRKLYFGRDTPALAPLTTQGNLPFRRLAVELGAELTYS 340
Query: 289 EMAVATELLKSSPQEWALIKRHESEDL-------------------FGVQLCGNNPYVLT 329
EMA+ L++ + +W L+K HESE + FG Q+ N P+V
Sbjct: 341 EMAMGLPLIQGTKADWTLLKAHESELVPPKAGGPIVQGYDNAKDIKFGAQISANQPWVAV 400
Query: 330 KCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQ 388
K + L+ + + +D+N GCPI+ ++K G GS LL+
Sbjct: 401 KAAECLKRFVPHLRVIDLNCGCPIDMLFKAGGGSALLE---------------------- 438
Query: 389 LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRT 447
G L+R ++ MN VS +P+TVK RT
Sbjct: 439 ---------------------------AHGKLER------MVRGMNTVSGEIPVTVKIRT 465
Query: 448 GIHKD----NNIIHNFMPKFRDW-------GASLITLHGRTREQRYTKQADWDYIEKCAQ 496
G+ + +II+ R+ G + ITLHGR+REQRYT++ADW Y+ +CA
Sbjct: 466 GVRSNRPTATSIINKLAFGAREHRERLGAPGCAAITLHGRSREQRYTRRADWSYVAECAA 525
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP----APL 552
L N TK AD D I + P +
Sbjct: 526 LIKSYNE----------------------------TKDADTDTIREPDASTLPNSKDGKM 557
Query: 553 Y--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
Y GNGD S+ +Y + + + + VMIGRGAL+KPW+F+EI++ + D A
Sbjct: 558 YFLGNGDCYSHVEYFDHIDNA-GVDSVMIGRGALVKPWLFEEIEKGQYLDKTA 609
>gi|146083263|ref|XP_001464693.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398013404|ref|XP_003859894.1| hypothetical protein, conserved [Leishmania donovani]
gi|134068787|emb|CAM59721.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322498112|emb|CBZ33187.1| hypothetical protein, conserved [Leishmania donovani]
Length = 595
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 165/343 (48%), Gaps = 106/343 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
KL L+PLTTVGNLPFRR+CK +GAD+T SEMAV L + EW+L++RHESED+FG+Q
Sbjct: 236 KLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIFGIQ 295
Query: 320 LCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
L + P Q LE + DF+D+N GCP+E I K G G GL +R
Sbjct: 296 LAVSRPQEAATFAQALEASGFSYDFLDINCGCPVEKIVKSGCGCGLWKRTGRL------- 348
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+ VV+ + ++ P+
Sbjct: 349 --------------RDVVESLAIHQSRPV------------------------------- 363
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+K R G+ +D +H + ++ WGA+ +T+HGR+R+QRYTK A+WDY+++CAQL
Sbjct: 364 ---AIKCRIGLDEDTPTLHQQIHRYSTWGAAAVTVHGRSRKQRYTKFANWDYVDQCAQLT 420
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
S P+ GNGDI
Sbjct: 421 S--------------------------------------------------LPVIGNGDI 430
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+S ED E ++ P I+ MIGRGALIKPW+F+EIK ++ DI
Sbjct: 431 MSLEDVLEHRERQPHITSHMIGRGALIKPWLFEEIKSGQVKDI 473
>gi|119589547|gb|EAW69141.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_a [Homo
sapiens]
gi|119589548|gb|EAW69142.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_a [Homo
sapiens]
Length = 315
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/247 (41%), Positives = 142/247 (57%), Gaps = 54/247 (21%)
Query: 358 QGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
Q S LL+R ++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G
Sbjct: 11 QMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKG 70
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
G L+ R+ Q ++ MN+V +P+TVK RTG+ + N+ H +P+ RDWG +L+TLH
Sbjct: 71 GGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLH 130
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYTK ADW YIE+C Q
Sbjct: 131 GRSREQRYTKLADWQYIEECVQ-------------------------------------- 152
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIK
Sbjct: 153 -----------AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIK 199
Query: 595 EKKLFDI 601
E++ +DI
Sbjct: 200 EQRHWDI 206
>gi|157867470|ref|XP_001682289.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68125742|emb|CAJ03495.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 595
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/343 (35%), Positives = 167/343 (48%), Gaps = 106/343 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
KL L+PLTTVGNLPFRR+CK +GAD+T SEMAV L + EW+L++RHESED+FG+Q
Sbjct: 236 KLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIFGIQ 295
Query: 320 LCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
L + P Q LE + DF+D+N GCP+E I K G G GL QR
Sbjct: 296 LAVSRPQEAATFAQALEASGFSYDFLDINCGCPVEKIVKSGCGCGLWQR----------- 344
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
T+ L + VV+ + + P+
Sbjct: 345 --------TERLRD--VVESLAIYQSRPV------------------------------- 363
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+K R G+ +D +H + ++ WGA+ +T+HGR+R+QRYTK A+WDY+++CAQL
Sbjct: 364 ---AIKCRIGLDEDIPTLHQQIHRYSAWGAAAVTVHGRSRKQRYTKFANWDYVDQCAQLT 420
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
S P+ GNGDI
Sbjct: 421 S--------------------------------------------------LPVIGNGDI 430
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+S ED E ++ P I+ MIGRGALIKPW+F+EIK ++ DI
Sbjct: 431 MSLEDVLEHRERQPHIASHMIGRGALIKPWLFEEIKTGQVKDI 473
>gi|378729948|gb|EHY56407.1| tRNA-dihydrouridine synthase 3 [Exophiala dermatitidis NIH/UT8656]
Length = 788
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 185/614 (30%), Positives = 265/614 (43%), Gaps = 124/614 (20%)
Query: 49 KFKKNKQVLKGQNKARG-----------PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKF 97
K K ++ +GQNKAR T V PE + P + C YG+ C+F
Sbjct: 122 KRSKRQEKGRGQNKARDYGSSRDEVGLCSTRVHAPE--FSP--------EPCPYGDNCRF 171
Query: 98 VHDKNVFM-KSKPEDISE----QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
HD ++ + K D++ C V+ G C G CRF SH E I ED +
Sbjct: 172 DHDLRTYLAQHKRSDLTTFNNGLCPVWEVKGRCSAGWKCRFVGSHSKE----IEHEDGRR 227
Query: 153 EW------------KNTVGNK----TVNMLANEVRQDLRKHTYNFEKSEKIC----KENK 192
E T G N+L + R DL K KS+ + K+ K
Sbjct: 228 ELVLVEDPERIAKHSQTSGEGEEAGVANVLTAQQRTDLMKRKMPTPKSDVVLPWIDKQTK 287
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQ--EETKSGPVLDTDIIKIKNS 250
+ N S G ++P Q E S ++ S
Sbjct: 288 KPSEQGGRRRQNGDNNQSGSGTGLRNSSSPEPAGGSTEQGTETNLSDSRAAFQDPPLRPS 347
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC GA T SEMA++ LL+ EWAL+K
Sbjct: 348 EKRRLYFGPETPILAPLTTQGNLPFRRLCTSLGAQFTYSEMAMSLPLLQGHKPEWALMKA 407
Query: 310 HESE---DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
HESE F ++ G N + D+ G Q
Sbjct: 408 HESEVQPPTFNMRSAGQNS----------SNNIVYDY-------------------GYDQ 438
Query: 367 RANL-FGVQLCGNNPYVLTKCTQLLEEQMV--VDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+L FG Q+ N P+V K T++L + + VD+N+GCPI+ +Y++G+GS L+
Sbjct: 439 SQDLRFGAQIAANKPWVAIKATEVLTTLLPKGLRVVDLNVGCPIDLVYREGAGSALMDAP 498
Query: 424 NILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF-----RD-----------W 466
+ L+ ++ MN VS P+TVK R G H + + RD
Sbjct: 499 SKLEKMLRGMNLVSGETPVTVKIRMGTKDKQPTAHKLVERLVLGNRRDDNNQPIENSDPC 558
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526
G + ITLHGR+R+QRYT++ADW+YI + A L I N K A IT
Sbjct: 559 GVAAITLHGRSRQQRYTRRADWEYISQTAAL-------IKNLQQK-----ADTITDTIHE 606
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
++R D K ++ GNGD+ S+E Y + L+ + + GVM RGALIK
Sbjct: 607 PDER-----DLPNGHKGSK-TGKVWFVGNGDVYSHEHYYDHLEHA-GVDGVMAARGALIK 659
Query: 587 PWIFQEIKEKKLFD 600
PW+F+EIK + D
Sbjct: 660 PWLFEEIKAGQYLD 673
>gi|310790042|gb|EFQ25575.1| dihydrouridine synthase [Glomerella graminicola M1.001]
Length = 767
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 193/646 (29%), Positives = 276/646 (42%), Gaps = 137/646 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G A IK EF+V + E V + D + + D + + K+ KGQNK R
Sbjct: 102 GQAPIKAEFLVYREGQAKEQEEVIDDDAAEGRDQGDGRDARDSRDKRDKKKREKGQNKER 161
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVF 119
F C + CK+G++C +HD ++K + ED+ +C VF
Sbjct: 162 SFGHFDDALRLCNSRAYTPEFSPRDCKFGDRCNMLHDLRKYLKEGRREDLETFDGKCPVF 221
Query: 120 LQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLA----NEVRQDLR 175
Q G CP G CRF SH+ E I ED KE K M + R+DLR
Sbjct: 222 EQLGVCPSGWKCRFVKSHMKE----IDHEDGRKELVLVEEPKEAKMSGEAPTDAGREDLR 277
Query: 176 KHTYN-FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
YN E KI K D N+++++ +E + D +I QE+
Sbjct: 278 PGVYNNTENQLKIDLSRKRVDFTETDKYITWMNKEARL---GDEFHQRRKDQIISNQEDL 334
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGK--LYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
++ V +K SEK+K+ + GK L+PLTT GNLPFRRLC GA +T SEMA+
Sbjct: 335 RAQFV----DPPLKPSEKRKL-YFGKETPALAPLTTQGNLPFRRLCVDLGAQLTYSEMAL 389
Query: 293 ATELLKSSPQEWALIKRHESE---------------------DL-FGVQLCGNNPYVLTK 330
L++ +WAL+K HESE DL FG Q+ G+ + K
Sbjct: 390 GMPLVQGVKNDWALMKAHESEISPPKVNQVSSNIVQGYDNSRDLKFGAQISGSQAWHCVK 449
Query: 331 CTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQL 389
LL + + +D+N GCPI+ ++K G GS LL+
Sbjct: 450 AVDLLNRYVPHLRLIDLNCGCPIDMVFKAGGGSALLE----------------------- 486
Query: 390 LEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTG 448
G L+R ++ MN VS +PITVK RTG
Sbjct: 487 --------------------------AHGKLER------MVRGMNTVSGEIPITVKLRTG 514
Query: 449 IHKDNNIIHNFMPKF-------RDW----GASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+ ++ + K RD G + ITLHGR+REQRYTK+ADW YI +CA +
Sbjct: 515 VRQNRPTATTILGKLAFGSRENRDRLGAPGCAAITLHGRSREQRYTKKADWGYIAECAAM 574
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
N R+ S + ++ R GNGD
Sbjct: 575 IKSYNEEKDKITDTAREPDESTLP---NAKDGRMF-------------------FLGNGD 612
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ +Y E ++K+ + VMIGRGAL+KPW+F+EI++ + D A
Sbjct: 613 CYSHVEYYEHIEKA-KVDTVMIGRGALVKPWLFEEIEKGQYLDKSA 657
>gi|121701031|ref|XP_001268780.1| tRNA dihydrouridine synthase, putative [Aspergillus clavatus NRRL
1]
gi|187471045|sp|A1CNY3.1|DUS3_ASPCL RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|119396923|gb|EAW07354.1| tRNA dihydrouridine synthase, putative [Aspergillus clavatus NRRL
1]
Length = 728
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 178/643 (27%), Positives = 270/643 (41%), Gaps = 131/643 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL------EELEVEDDGTAKKKFKKNKQVLK 58
G+A +K EFIV+ + +E N D ++ E E G K + +
Sbjct: 63 GIAPVKAEFIVQKSARPQPVEADNTVDADDAAEAASHQQRESEQKGKKKTSGQNKGRDFG 122
Query: 59 GQNKARG--PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE- 114
N A+G P+ PE + P + CK+G++C+F HD ++K K D++
Sbjct: 123 QHNDAKGLCPSRAFSPE--FSP--------KECKFGDRCRFEHDVRTYLKEHKRADLTTF 172
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
C ++ G CP G CRF SH+ E + KE VL E + K L
Sbjct: 173 GGICPLWEAKGRCPYGYKCRFVGSHMTERETADGRKELVLVEDET---RKKAQPLVPHAS 229
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV---- 227
+D + + E +K+ + K D ++ SK +E + ++ + DD
Sbjct: 230 EDGIVNAVSME--DKVAVARRKIKTPRSDAYLTWLDKTSKALE--KNLHGRHFDDDAEGE 285
Query: 228 ----IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+KV E ++ + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 286 VGADVKVSLEDVRAAYVEPPFLP---SEKRRLYFGPETPALAPLTTQGNLPFRRLCTDLG 342
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A T SEMA+ L++ EWAL+K HE+E + FG Q+
Sbjct: 343 AQFTYSEMAMGMSLIQGQKSEWALMKAHETEAIPPTISSGANIVQGYDNSQDLKFGAQIA 402
Query: 322 GNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N P+ K T+LL + +D+N GCPI+ +Y+ G+GS LL + L G N
Sbjct: 403 ANKPWHAIKATELLGRLTPHLRVIDLNCGCPIDQVYRDGAGSALLDHQSKLEKILRGMNA 462
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
V+ PI + G+ +++ + +E S L
Sbjct: 463 --------------------VSEAIPITVKIRTGTRDASPNALKLIERLTLGGHESSML- 501
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
N P G + ITLHGRTR+QRYTKQADW YI +CA L R
Sbjct: 502 -----------------NIGPP----GVAAITLHGRTRQQRYTKQADWSYIAECAALIKR 540
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N R+ A + G+ GNGD S
Sbjct: 541 LNEKTDEVTDTVREPDARTLPNGGKVY------------------------FLGNGDCYS 576
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
++DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 577 HKDYEDHINNA-GVDAVMVGRGAIIKPWVFEEIQTGQYLDKTA 618
>gi|340055011|emb|CCC49319.1| putative tRNA-dihydrouridine synthase 3 [Trypanosoma vivax Y486]
Length = 563
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 175/355 (49%), Gaps = 105/355 (29%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
+N+ ++ ++ KL L+PLTTVGNLPFRR+CK++GADIT EMA+ L + EW+L+
Sbjct: 190 ENNARRSSLFKNKLVLAPLTTVGNLPFRRICKEYGADITVGEMAIVHNLNRLQKGEWSLL 249
Query: 308 KRHESEDLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+RH SED+FG+QL + P +T + E + + DFVDVN GCP++ I + G G GL +
Sbjct: 250 RRHSSEDIFGLQLAVSRPQEAITWAQAIGESEFSYDFVDVNCGCPVDKIVQSGCGCGLWE 309
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
R GN + +++
Sbjct: 310 RR--------GN------------------------------------------RLRDVV 319
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
QS++ N P+T+K R G +++ +H + ++ WG + IT+HGR+R+QRYTK A
Sbjct: 320 QSLVQHQNR----PVTIKCRIGPDENDPQLHRQIAEYEGWGVAAITIHGRSRKQRYTKLA 375
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
+W YIE+CA L S
Sbjct: 376 NWSYIEQCASLTS----------------------------------------------- 388
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+ GNGD+ SYED + K+ P ++ MIGRGALIKPW+F+EIK ++ DI
Sbjct: 389 ---LPIIGNGDVFSYEDVEQHRKQCPRVTSFMIGRGALIKPWVFEEIKTGQVRDI 440
>gi|325090975|gb|EGC44285.1| tRNA-dihydrouridine synthase [Ajellomyces capsulatus H88]
Length = 741
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 180/645 (27%), Positives = 282/645 (43%), Gaps = 126/645 (19%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + +D AK+K ++ K+ GQN
Sbjct: 65 GVAPIKKEYLIEVSQSTGQASPRAIADDDGVEAAKHHEQDGDGAKQKGRREKK--GGQNI 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
R TF ++ C C +G+ CKF HD ++K+ K D+
Sbjct: 123 KR--TFGRSQDEKQLCQTVAYYPEFSPNACPFGKSCKFEHDIRKYLKNYKRADLDTFGGV 180
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGNK-----TVN 164
C V+ G CP G CRF SH+ E ++ ED + T N VN
Sbjct: 181 CPVWEAKGRCPSGWKCRFVGSHMAERETEDGRKELVLVEDASRMKHPTSANGIEVDGVVN 240
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
++ E + L K Y K++ + S+ ++ +++ + ++ T +
Sbjct: 241 VVTTEAKLSLAKKRYQTPKADSYTTWIDTVSREVERNLHGRIQDEPASAPGNADDQGTSD 300
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+ D ++E + + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 301 SKD----EKEDNRARYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLG 353
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 354 AQLTYSEMAMSMSLVQGSKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQIT 413
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V + T+ + Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 414 GNKPWVALRATEAMTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL------- 464
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
E+M+ V+ PI + G+ +++ +I M V S
Sbjct: 465 -------------EKMLRGMNAVSGEIPITVKIRMGTKDSNPTATKLIERLI--MGGVES 509
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
I G + ITLHGR+R+QRY++QADW+YI +CA L
Sbjct: 510 HEIGRGPA--------------------GVAAITLHGRSRQQRYSRQADWEYISQCAALV 549
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R N D G I K+ D ++ GNGD
Sbjct: 550 KRLNEQT--------DIGTDTI------------KEPDARDQPSAGKVF----FLGNGDC 585
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+EDY ++KS + VM+ RGAL+KPWIF+EI++ + D A
Sbjct: 586 YSHEDYLSGIQKS-GVDTVMVARGALVKPWIFEEIEKGQYLDKSA 629
>gi|401418813|ref|XP_003873897.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490130|emb|CBZ25391.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 660
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 127/400 (31%), Positives = 182/400 (45%), Gaps = 109/400 (27%)
Query: 206 KNQDSKVIEGREEINTPNTDDVIKVQ-EETKSGPVLDTDIIK--IKNSEKKKIDWQGKLY 262
K + S E TP D K +E + P + ++ I + + KL
Sbjct: 244 KRERSSSAEEGPITETPTPDATTKSSSDEPTARPTRTEESLREVIARQSSSRGLFAEKLV 303
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PLTTVGNLPFRR+CK +GAD+T SEMAV L + EW+L++RHESED+FG+QL
Sbjct: 304 LAPLTTVGNLPFRRVCKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIFGIQLAV 363
Query: 323 NNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
+ P LE + DF+D+N GCP+E I K G G GL +R
Sbjct: 364 SRPEEAATFAHALEASGFSYDFLDINCGCPVEKIVKSGCGCGLWKRTGRL---------- 413
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI 441
+ VV+ + ++ P+
Sbjct: 414 -----------RDVVESLAIHQSRPV---------------------------------- 428
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
+K R G+ +D +H + ++ WGA+ +T+HGR+R+QRYTK A+WDY+++CAQL S
Sbjct: 429 AIKCRIGLDEDTPTLHQQIHRYSTWGAAAVTVHGRSRKQRYTKLANWDYVDQCAQLTS-- 486
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
P+ GNGDI+S
Sbjct: 487 ------------------------------------------------LPVIGNGDIMSL 498
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
ED E ++ P I+ MIGRGALIKPW+F+EIK ++ DI
Sbjct: 499 EDVLEHRERQPHITSHMIGRGALIKPWLFEEIKSGQVKDI 538
>gi|426193983|gb|EKV43915.1| hypothetical protein AGABI2DRAFT_187624 [Agaricus bisporus var.
bisporus H97]
Length = 616
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 163/610 (26%), Positives = 260/610 (42%), Gaps = 163/610 (26%)
Query: 51 KKNKQVLKGQNKARGPTFV-TKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKP 109
K+ K+ +G NK R F T+ E C + + + C++GE CKF HD + ++ +K
Sbjct: 3 KEEKKATRGANKGR--RFAKTRDEVDLCWRVANGS---DCEHGENCKFSHDVSAYLAAKI 57
Query: 110 EDI----------------------------------SEQCYVFLQHGYCPMGIACRFGS 135
D+ C VF + G C G CRF
Sbjct: 58 HDVRIPNTSEISDSAPFVYEGNKSVGASHPIHSSLDLGTTCPVFSETGECRYGFKCRFLG 117
Query: 136 SH--LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
H ++E G + D K+ + + +N ++++VR LR Y S +E K
Sbjct: 118 GHVRINETGNITLAGDEDKKARAVLTANELNFVSSDVRTALRTKKYPTPVSAAYLEELKG 177
Query: 194 SKNENKDTDDCCKNQDSKVI-EGREEIN------------TPNTDDVIKVQEETKSGPVL 240
+++ K+ ++DS ++ E +++N T ++++ + + P
Sbjct: 178 HEDK-KEESKLVPDEDSVIVAEPEQDLNSMVSALKTPECLTTGIQELVQKRTGDTAQPT- 235
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
DT+ + I EKK++ W G K + A +T
Sbjct: 236 DTEDVPIGFREKKRLHWAG-------------------KTYLAPLTT------------- 263
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
GN P+ C L D +G F+
Sbjct: 264 --------------------VGNLPFRRV-CVSL-----GADITCGEMGLATSFLAGSKE 297
Query: 361 GSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMV--VDFVDVNLGCPIEFIYKQGS 415
L++R +FGVQ+ GN P + + + +++ +DFVDVN GCPI+ +++QGS
Sbjct: 298 EWSLVRRHPSEKIFGVQIAGNKPANMVPTAEAIAKELAGGLDFVDVNCGCPIDLVFRQGS 357
Query: 416 GSGLLQRANILQSVITCMNE-VSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITL 473
GS L+ L ++ MN+ + +P+TVK R G+ + + H MP+ DW A+ +TL
Sbjct: 358 GSALIDALGKLGKILIGMNKALGEIPVTVKLRMGVREAKHTAHKLMPRLVVDWNAACLTL 417
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGRTR+QRYT+ ADWDYI+KC + RTRE+
Sbjct: 418 HGRTRQQRYTRLADWDYIQKCVEAV--------------------------RTREEEEDL 451
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
A P++GNGD S DY +L++S + G+M+GRGALIKPWIF EI
Sbjct: 452 PA--------------VPIFGNGDCFSAHDYYTNLEQSKA-DGIMVGRGALIKPWIFTEI 496
Query: 594 KEKKLFDIYA 603
KE++ +DI A
Sbjct: 497 KERREWDISA 506
>gi|72391948|ref|XP_846268.1| tRNA-dihydrouridine synthase 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62359888|gb|AAX80315.1| tRNA-dihydrouridine synthase 3, putative [Trypanosoma brucei]
gi|70802804|gb|AAZ12709.1| tRNA-dihydrouridine synthase 3, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 528
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 136/439 (30%), Positives = 201/439 (45%), Gaps = 122/439 (27%)
Query: 180 NFEKSEKICKENKASKNENKDT-----DDC------CKNQDSKVIEGREEINTP-----N 223
NF E + + + + KDT +DC ++ KV EE TP N
Sbjct: 72 NFFHGEVLQRIKAVVRGKRKDTKRDRREDCQAPSGEAESTAGKVKHDDEERGTPALQQTN 131
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
TD+ + ++ +T+ + S + K + KL L+PLTTVGNLPFRR+CK++GA
Sbjct: 132 TDES-HITVKSAVARASNTEESMRERSAQHKALFSNKLVLAPLTTVGNLPFRRVCKEYGA 190
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ-MAVD 342
DIT EMA+ L + EW+L++RH SED+FG+Q+ + P+ Q +EE + D
Sbjct: 191 DITVGEMAIVHNLNRLQKSEWSLLRRHSSEDIFGLQIAVSRPHDAITWAQAVEESGFSYD 250
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
FVD+N GCP++ + G G GL +R GN
Sbjct: 251 FVDINCGCPVDKVVLSGCGCGLWERK--------GN------------------------ 278
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
+ +++QS++ S P+T+K R G ++N +H +
Sbjct: 279 ------------------RLRDVVQSLVAHQ----SKPVTIKCRMGPDEENPELHKHIAD 316
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
+ WGA+ +T+HGR+R QRYTK A+W YI+ CA L S
Sbjct: 317 YETWGAAAVTIHGRSRRQRYTKLANWSYIDNCASLTS----------------------- 353
Query: 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582
P+ GNGDI S ED E +S ++S MIGRG
Sbjct: 354 ---------------------------LPVIGNGDIFSCEDIVEHRAQSKNVSSFMIGRG 386
Query: 583 ALIKPWIFQEIKEKKLFDI 601
AL+KPWIF+EIK +++DI
Sbjct: 387 ALVKPWIFEEIKTGRVWDI 405
>gi|327357988|gb|EGE86845.1| tRNA-dihydrouridine synthase 3 [Ajellomyces dermatitidis ATCC
18188]
Length = 737
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 185/652 (28%), Positives = 283/652 (43%), Gaps = 139/652 (21%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + E +G + ++ ++ GQN
Sbjct: 60 GVAPIKKEYLIEVSPGAAQASPRAIPDDDAAEAAKHH-EQEGNSGRQKGGKREKKGGQNT 118
Query: 63 ARGPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE--- 114
R TF + +D C + C +G+ CKF HD ++K K D+
Sbjct: 119 KR--TF-GRSQDAKQLCQTVAYHSEFSPKPCPWGKSCKFEHDIRKYLKDYKRADLDTFGG 175
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGG-NIVKEDVLKEWKNTVGNKT----------V 163
C V+ G CP G CRF SH+ E + KE VL E + + N T V
Sbjct: 176 VCPVWGAKGRCPAGWKCRFVGSHMAERETEDGRKELVLVEDASRMKNPTSENGIGIDGAV 235
Query: 164 NMLANEVRQDLRKHTYNFEKSEKICK-----ENKASKN-ENKDTDDCCKNQDSKVIEGRE 217
N+++ E + L K Y K++ + KN ++ DD D ++G
Sbjct: 236 NVVSTEDKLALAKKRYKTPKADSYTTWIDTVSREVEKNLHGRNQDDTASVPDKTDVQGAF 295
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRR 276
+I D+ + E P L SEK+++ + + L+PLTT GNLPFRR
Sbjct: 296 DIKDEKEDNRAQYTEP----PFLP--------SEKRRVYFGPETPVLAPLTTQGNLPFRR 343
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL--------------------- 315
LC GA +T SEMA++ L++ S EWAL+K HESE L
Sbjct: 344 LCVDLGAQLTYSEMAMSMSLVQGSKSEWALMKAHESEILPPTVNPQQTIVKNYDNSRDLK 403
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FGVQ+ GN P+V + T+ L + +D+N GCPI+ ++++GSGS LL A+
Sbjct: 404 FGVQITGNKPWVALRATEALTALCPHLRVIDMNCGCPIDMVFREGSGSALLDHASKL--- 460
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI---T 431
E+M+ V+ PI + G+ +++ +I
Sbjct: 461 -----------------EKMLRGMNAVSGEIPITAKIRMGTKDSNPTATKLVERLICGGV 503
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+E+ P G + ITLHGR+R+QRY++QADW+YI
Sbjct: 504 ESHEIGQGPA-------------------------GVAAITLHGRSRQQRYSRQADWEYI 538
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+CA L R N D I K+ D Y ++
Sbjct: 539 SQCAALVKRLNEQT--------DIAIDTI------------KEPDARYQPAAGKVF---- 574
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY ++KS + VM+ RGAL+KPWIF+E+++ + D A
Sbjct: 575 FLGNGDCYSHEDYFNGIQKS-GVDTVMVARGALMKPWIFEEVEKGQYLDKSA 625
>gi|261189953|ref|XP_002621387.1| tRNA-dihydrouridine synthase 3 [Ajellomyces dermatitidis SLH14081]
gi|239591623|gb|EEQ74204.1| tRNA-dihydrouridine synthase 3 [Ajellomyces dermatitidis SLH14081]
Length = 737
Score = 202 bits (514), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 185/652 (28%), Positives = 283/652 (43%), Gaps = 139/652 (21%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + E +G + ++ ++ GQN
Sbjct: 60 GVAPIKKEYLIEVSPGAAQASPRAIPDDDAAEAAKHH-EQEGNSGRQKGGKREKKGGQNT 118
Query: 63 ARGPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE--- 114
R TF + +D C + C +G+ CKF HD ++K K D+
Sbjct: 119 KR--TF-GRSQDAKQLCQTVAYHSEFSPKPCPWGKSCKFEHDIRKYLKDYKRADLDTFGG 175
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGG-NIVKEDVLKEWKNTVGNKT----------V 163
C V+ G CP G CRF SH+ E + KE VL E + + N T V
Sbjct: 176 VCPVWGAKGRCPAGWKCRFVGSHMAERETEDGRKELVLVEDASRMKNPTSENGIGIDGAV 235
Query: 164 NMLANEVRQDLRKHTYNFEKSEKICK-----ENKASKN-ENKDTDDCCKNQDSKVIEGRE 217
N+++ E + L K Y K++ + KN ++ DD D ++G
Sbjct: 236 NVVSTEDKLALAKKRYKTPKADSYTTWIDTVSREVEKNLHGRNQDDTASVPDKTDVQGAF 295
Query: 218 EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRR 276
+I D+ + E P L SEK+++ + + L+PLTT GNLPFRR
Sbjct: 296 DIKDEKEDNRAQYTEP----PFLP--------SEKRRVYFGPETPVLAPLTTQGNLPFRR 343
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL--------------------- 315
LC GA +T SEMA++ L++ S EWAL+K HESE L
Sbjct: 344 LCVDLGAQLTYSEMAMSMSLVQGSKSEWALMKAHESEILPPTVNPQQTIVKDYDNSRDLK 403
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FGVQ+ GN P+V + T+ L + +D+N GCPI+ ++++GSGS LL A+
Sbjct: 404 FGVQITGNKPWVALRATEALTALCPHLRVIDMNCGCPIDMVFREGSGSALLDHASKL--- 460
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI---T 431
E+M+ V+ PI + G+ +++ +I
Sbjct: 461 -----------------EKMLRGMNAVSGEIPITAKIRMGTKDSNPTATKLVERLICGGV 503
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+E+ P G + ITLHGR+R+QRY++QADW+YI
Sbjct: 504 ESHEIGQGPA-------------------------GVAAITLHGRSRQQRYSRQADWEYI 538
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+CA L R N D I K+ D Y ++
Sbjct: 539 SQCAALVKRLNEQT--------DIAIDTI------------KEPDARYQPAAGKVF---- 574
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY ++KS + VM+ RGAL+KPWIF+E+++ + D A
Sbjct: 575 FLGNGDCYSHEDYFNGIQKS-GVDTVMVARGALMKPWIFEEVEKGQYLDKSA 625
>gi|409077983|gb|EKM78347.1| hypothetical protein AGABI1DRAFT_60503 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 616
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 165/597 (27%), Positives = 258/597 (43%), Gaps = 137/597 (22%)
Query: 51 KKNKQVLKGQNKARGPTFV-TKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKP 109
K+ K+ +G NK R F T+ E C + + + C++GE CKF HD + ++ +K
Sbjct: 3 KEEKKATRGANKGR--RFAKTRDEVDLCWRVANGS---DCEHGENCKFSHDVSAYLAAKI 57
Query: 110 EDI----------------------------------SEQCYVFLQHGYCPMGIACRFGS 135
D+ C VF + G C G CRF
Sbjct: 58 HDVRIPNTSEISDSAPFVYEGNKSVGASHPIHSSLDLGTTCPVFSETGECRYGFKCRFLG 117
Query: 136 SH--LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
H ++E G + D K+ + + +N ++++VR LR Y S +E K
Sbjct: 118 GHVRINETGNITLAGDEDKKARAVLTANELNFVSSDVRTALRTKKYPTPVSAAYLEELKG 177
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
++ K ++SK++ P+ D VI + E L++ + +K E
Sbjct: 178 HED---------KKEESKLV--------PDEDSVIVAEPEQD----LNSMVSALKTPE-- 214
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
T G + L +K D + TE + +E +
Sbjct: 215 ------------CLTTG---IKELVQKRTGD---AAQPTDTEDVPIGFREKKRLHWAGKT 256
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANL 370
L + GN P+ C L D +G F+ L++R +
Sbjct: 257 YLAPLTTVGNLPFRRV-CVSL-----GADITCGEMGLATSFLAGSKEEWSLVRRHPSEKI 310
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV--VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
FGVQ+ GN P + + + +++ +DFVDVN GCPI+ +++QGSGS L+ L
Sbjct: 311 FGVQIAGNKPANMVPTAEAIAKELAGGLDFVDVNCGCPIDLVFRQGSGSALIDAPGKLGK 370
Query: 429 VITCMNE-VSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQA 486
++ MN+ + +P+TVK R G+ + + H MP+ DW A+ +TLHGRTR+QRYT+ A
Sbjct: 371 ILIGMNKALGEIPVTVKLRMGVREAKHTAHKLMPRLVVDWNAACLTLHGRTRQQRYTRLA 430
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DWDYI+KC + RTRE+ A
Sbjct: 431 DWDYIQKCVEAV--------------------------RTREEEEDLPA----------- 453
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
P++GNGD S DY +L++S + G+M+GRGALIKPWIF EIKE++ +DI A
Sbjct: 454 ---VPIFGNGDCFSAHDYYANLEQSKA-DGIMVGRGALIKPWIFTEIKERREWDISA 506
>gi|320593462|gb|EFX05871.1| tRNA dihydrouridine synthase [Grosmannia clavigera kw1407]
Length = 752
Score = 201 bits (512), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 180/652 (27%), Positives = 269/652 (41%), Gaps = 128/652 (19%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECV----NETDKRKLEELEVEDDGTAKKKFKKNKQVLKG 59
+G+A IK+E++++ +E + R E G K K KNK G
Sbjct: 65 TGIAPIKEEYLIDGGGSDDRRGGDVFDDDEAEGRGSNEAAPVSAGGRKGKRGKNK----G 120
Query: 60 QNKARGPTFVTKPEDCYCPFLKDST--LEQTCKYGEKCKFVHDKNVFM----KSKPEDIS 113
QNK R + ++ C + +S + C+ GE+C+ +H ++ + +
Sbjct: 121 QNKERDFGW-SRDAVRLCTSVANSPEFSPKPCRSGERCRCLHSVREYLSTGRRGDVDTFD 179
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGN-----------K 161
+C VF +G CP G CRF SSH++E + KE VL E + G
Sbjct: 180 GRCPVFELYGRCPSGWRCRFVSSHMEEVEHPDGRKELVLVEKETAAGRLAGSEDDDARPG 239
Query: 162 TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINT 221
VN++A E + +L + +KSE + E K+ + IEG + +
Sbjct: 240 VVNVVAAEEKHNLMRKRTTLDKSEAFIQ---WLDRETSIIKKIFKDPTGRSIEGEQSLLK 296
Query: 222 PNTDDVIKVQEE-TKSGPVLDTDIIKIKN-----SEKKKIDWQGKL-YLSPLTTVGNLPF 274
P V E+ K P +D + + SEK+++ + + L+PLTT GNLPF
Sbjct: 297 PPGPRVDDAAEDGAKDEPTIDDYRAQFVDPPFLPSEKRRLYFGPETPTLAPLTTQGNLPF 356
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------------- 315
RRLC + G + T SEMA+ +LL P EWAL+K H +E +
Sbjct: 357 RRLCVELGCEATYSEMALGLDLLTGKPSEWALLKAHATEAVPPRVDSVRSAQTAGYDNGR 416
Query: 316 ---FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
FG Q+ N P++ K T+ L + + VD+N GCPIE ++K G GSGLL+ N
Sbjct: 417 DLRFGAQIAANQPWMAIKATEALSRLVPHLRLVDMNCGCPIEMLFKTGGGSGLLEAHNKL 476
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
E+M+ V+ PI + G G +++ +
Sbjct: 477 --------------------ERMIRGMNAVSGEVPITAKLRVGVRDGSPTAHKVIERLAF 516
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + R G G + ITLHGRTR QRY K ADW YI
Sbjct: 517 GG-------VETRGRLGAP----------------GCAAITLHGRTRNQRYKKPADWRYI 553
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+CA L N R+ + GR
Sbjct: 554 AECAALVRSYNESRDKITDTVREPDDRTLPPGGRIF------------------------ 589
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+E Y + ++ + VMIGRGAL+KPWIF+EI + D A
Sbjct: 590 FLGNGDCFSHEQYRAQIDQA-DVDTVMIGRGALVKPWIFEEIAAGQYLDKSA 640
>gi|70996182|ref|XP_752846.1| tRNA dihydrouridine synthase [Aspergillus fumigatus Af293]
gi|74672269|sp|Q4WRX4.1|DUS3_ASPFU RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|66850481|gb|EAL90808.1| tRNA dihydrouridine synthase, putative [Aspergillus fumigatus
Af293]
gi|159131599|gb|EDP56712.1| tRNA dihydrouridine synthase, putative [Aspergillus fumigatus
A1163]
Length = 726
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 179/658 (27%), Positives = 275/658 (41%), Gaps = 158/658 (24%)
Query: 5 GVAKIKQEFIVEDHVK-------VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVL 57
GVA IK EF+V+ + LS+ + + +E E + +K K+
Sbjct: 58 GVAPIKAEFLVQKSARSQPVEESALSLSADDAAEAAHYQEREGD---------QKGKKKA 108
Query: 58 KGQNKARGPTFVTKPEDC--YCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDI 112
GQNK R + ED CP S + CK+GEKC+F HD ++K K ED+
Sbjct: 109 SGQNKGRD---FGRSEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDL 165
Query: 113 SE---QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
+ C ++ G CP G CR SH+ E + G K + +L +E
Sbjct: 166 TTFGGICPIWDAKGRCPYGFKCRLVGSHMTER-------------DTSDGRKELILLEDE 212
Query: 170 VRQDLRKHTYNF----------EKSEKICKENKASKNENKDTDDCCKNQDSKVIE----- 214
R+ + + +KI + + D ++ SK +E
Sbjct: 213 ERKKKARPVVPYASEDGLVNIVSNEDKIAVARRKTTTPRSDVYLAWLDKMSKALEKNLHG 272
Query: 215 ------GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLT 267
G +E T+D + EE ++ V + SEK++I + + L+PLT
Sbjct: 273 RHLEEGGADEGARAQTNDQV---EENRAAYVEPPFL----PSEKRRIYFGPETPTLAPLT 325
Query: 268 TVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------ 315
T GNLPFRRLC +G T SEMA+ L++ EWAL+K HESE L
Sbjct: 326 TQGNLPFRRLCIDYGCQFTYSEMAMGMSLIQGQKSEWALMKAHESEALPPTISSTADVVQ 385
Query: 316 ---------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLL 365
FG Q+ GN P+ K T+LL + +D+N GCPI+ ++++G+GS LL
Sbjct: 386 GYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFREGAGSALL 445
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
++P L E+M+ V+ PI + G+ +
Sbjct: 446 ------------DHPSKL--------EKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKL 485
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
++ ++ +E L N P G + +TLHGR+R+QRYTK
Sbjct: 486 IERLVLGGHESGIL------------------NIGPP----GVAAVTLHGRSRQQRYTKM 523
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW YI +CA L R N + R+ ++ G+
Sbjct: 524 ADWSYIAECAALIKRLNEKKDDVTDTVREPDERMLPNGGKVF------------------ 565
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+ DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 566 ------FLGNGDCYSHYDYDDHINNA-GVDAVMVGRGAIIKPWVFEEIQAGQYLDKSA 616
>gi|261329882|emb|CBH12865.1| tRNA-dihydrouridine synthase 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 528
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 135/442 (30%), Positives = 200/442 (45%), Gaps = 128/442 (28%)
Query: 180 NFEKSEKICKENKASKNENKDT-----DDC------CKNQDSKVIEGREEINTPNTDDVI 228
NF E + + + + KDT +DC ++ KV EE TP +
Sbjct: 72 NFFHGEVLQRIKAVVRGKRKDTKRDRREDCQAPSGEAESTAGKVKHDDEERGTP----AL 127
Query: 229 KVQEETKSGPVLDTDIIKIKNSE--------KKKIDWQGKLYLSPLTTVGNLPFRRLCKK 280
+ +S + + + + N+E + K + KL L+PLTTVGNLPFRR+CK+
Sbjct: 128 QQTNTDESHITVKSAVARASNTEESMRERIAQHKALFSNKLVLAPLTTVGNLPFRRVCKE 187
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ-M 339
+GADIT EMA+ L + EW+L++RH SED+FG+Q+ + P+ Q +EE
Sbjct: 188 YGADITVGEMAIVHNLNRLQKSEWSLLRRHSSEDIFGLQIAVSRPHDAITWAQAVEESGF 247
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
+ DFVD+N GCP++ + G G GL +R GN
Sbjct: 248 SYDFVDINCGCPVDKVVLSGCGCGLWERK--------GN--------------------- 278
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
+ +++QS++ S P+T+K R G ++N +H
Sbjct: 279 ---------------------RLRDVVQSLVAHQ----SKPVTIKCRMGPDEENPDLHKH 313
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+ + WGA+ +T+HGR+R QRYTK A+W YI+ CA L S
Sbjct: 314 IADYETWGAAAVTIHGRSRRQRYTKLANWSYIDNCASLTS-------------------- 353
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
P+ GNGDI S ED E +S ++S MI
Sbjct: 354 ------------------------------LPVIGNGDIFSCEDIVEHRAQSKNVSSFMI 383
Query: 580 GRGALIKPWIFQEIKEKKLFDI 601
GRGALIKPWIF+EIK +++DI
Sbjct: 384 GRGALIKPWIFEEIKTGRVWDI 405
>gi|209875549|ref|XP_002139217.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
gi|209554823|gb|EEA04868.1| dihydrouridine synthase family protein [Cryptosporidium muris RN66]
Length = 716
Score = 201 bits (511), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 167/577 (28%), Positives = 254/577 (44%), Gaps = 131/577 (22%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQ-----------CYVFLQHGYCPMGIACRFGSSH 137
C GEKC + H+ F+++K ISE+ C F +G C G+ C F H
Sbjct: 101 CTKGEKCNYDHNIQSFLENKV--ISEEELSWKYQYGNICPRFENYGICNYGLNCIFWLQH 158
Query: 138 LDENGGNIVKED----VLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
D++ +K+ L + + N +N + NEVR L + T F KS+ K K
Sbjct: 159 WDKHLNRNIKKSGEVVTLYDIEVFRKNHELNYIDNEVRNQLLRKTVRFPKSDDFIKNWKE 218
Query: 194 SK-NENKDTDDCCKNQ------------DSKVI---EGREEINTPNT------------- 224
SK N N + K Q D K I E ++I NT
Sbjct: 219 SKYNPNISLFNKDKKQKNIIFKHGNPLLDQKHIGCTEKNKDIFFENTSSKTESSLSTNIL 278
Query: 225 -----DDVIKVQEETKS------------GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPL 266
+D +E+TKS P +D+DI N E +K + KL L+PL
Sbjct: 279 KNLGCNDNKSNKEDTKSCSEVKQPCLITCNPGIDSDIFYESNVESQKPSFFDNKLILAPL 338
Query: 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY 326
TT+GNLPFRRLC + GADIT SEM + E+L E AL++RH E FG+QL G N
Sbjct: 339 TTLGNLPFRRLCVRLGADITFSEMTLCNEILAGKSSELALLRRHSEERCFGIQLAGGNFE 398
Query: 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
+ K + + E DF+D+N+ CP++ ++ +G+GS L+ R L ++T
Sbjct: 399 TIAKTGEFINEYCDYDFLDINVACPLKSLHDRGAGSILIDRPKLL--------ESIITGL 450
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
+++++ + + N P + + + +I+ S
Sbjct: 451 KKVIDKPLTIKLRMANSASPPNLKFYENTYINNPLNWDIIYS------------------ 492
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
N H + ++ + I +HGRT QRY K ADW+Y+ C++ I+
Sbjct: 493 ------NMAAHKLIKPLVNYNINGIIIHGRTSSQRYNKSADWNYLRYCSK-------ILK 539
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
N ++D + I C L G GD+L+Y DY +
Sbjct: 540 NEYLTYKDTNKN---------------------ITYCPSLI------GCGDVLNYCDYYK 572
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
L + ++ VMIGRGAL+KPWIF EIKE++++DI A
Sbjct: 573 HLNED-DVNAVMIGRGALLKPWIFTEIKEQRIWDISA 608
>gi|154335122|ref|XP_001563801.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134060830|emb|CAM37846.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 590
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 167/343 (48%), Gaps = 106/343 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
KL L+PLTTVGNLPFRR+CK +GAD+T SEMAV L + EW+L++RHESED+FG+Q
Sbjct: 231 KLVLAPLTTVGNLPFRRICKSFGADVTLSEMAVVFNLNRLQKSEWSLLRRHESEDIFGIQ 290
Query: 320 LCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
L + P Q+LE + DF+D+N GCP+E + K G G GL +R
Sbjct: 291 LAVSRPQEAATFAQVLEASGFSYDFLDINCGCPVEKLVKSGCGCGLWERTGRL------- 343
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+ VV+ + ++ P+
Sbjct: 344 --------------RDVVENLAIHQSRPV------------------------------- 358
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
T+K R G + +H + ++ WGA+ +T+HGR+R+QRYTK A+WDY+++CAQL
Sbjct: 359 ---TIKCRIGFDEAMPTLHQQIHQYSTWGAAAVTVHGRSRKQRYTKFANWDYVDQCAQL- 414
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
SL+ P+ GNGDI
Sbjct: 415 -------------------SLL------------------------------PVIGNGDI 425
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+S ED E ++ P I+ MIGRGALIKPW+F+EIK ++ DI
Sbjct: 426 MSLEDVLEHRRRQPHITSHMIGRGALIKPWLFEEIKSGQVKDI 468
>gi|225561539|gb|EEH09819.1| tRNA-dihydrouridine synthase 3-like protein [Ajellomyces capsulatus
G186AR]
Length = 741
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 179/645 (27%), Positives = 281/645 (43%), Gaps = 126/645 (19%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + +D G AK+K ++ K+ GQN
Sbjct: 65 GVAPIKKEYLIEVSQSTGQASPRAIADDDAAEAAKHHEQDGGGAKQKGRREKK--GGQNI 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK----SKPEDISEQ 115
R TF ++ C C +G+ CKF HD ++K + +
Sbjct: 123 KR--TFGRSQDEKQLCQTVAYYPEFSPNACPFGKSCKFEHDIRKYLKNYRRADLDTFGGV 180
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGNK-----TVN 164
C V+ G CP G CRF SH+ E ++ ED + T N VN
Sbjct: 181 CPVWGAKGRCPSGWKCRFVGSHMAERETEDGRKELVLVEDASRMKHPTSANGIEVDGVVN 240
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
++ E + L K Y K++ + S+ ++ +++ + ++ T +
Sbjct: 241 VVTTEAKLALAKKRYQTPKADSYTTWIDTVSREVERNLHGRIQDELASAPGNADDQGTSD 300
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+ D ++E + + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 301 SKD----EKEDNRARYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLG 353
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 354 AQLTYSEMAMSMSLVQGSKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQIT 413
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V + T+ + Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 414 GNKPWVALRATEAMTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL------- 464
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
E+M+ V+ PI + G+ +++ +I M V S
Sbjct: 465 -------------EKMLRGMNAVSGEIPITVKIRMGTKDSNPTATKLIERLI--MGGVES 509
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
I G + ITLHGR+R+QRY++QADW+YI +CA L
Sbjct: 510 HEIGRGPA--------------------GVAAITLHGRSRQQRYSRQADWEYISQCAALV 549
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R N D G I K+ D ++ GNGD
Sbjct: 550 KRLNEQT--------DIGTDTI------------KEPDARDQPSAGKVF----FLGNGDC 585
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+EDY ++KS + VM+ RGAL+KPWIF+EI++ + D A
Sbjct: 586 YSHEDYFSGIQKS-GVDTVMVARGALVKPWIFEEIEKGQYLDKSA 629
>gi|336262846|ref|XP_003346205.1| hypothetical protein SMAC_05742 [Sordaria macrospora k-hell]
gi|380093534|emb|CCC08497.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 739
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 183/638 (28%), Positives = 260/638 (40%), Gaps = 131/638 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK E++V +V V + D + + G A K KK + KGQNK R
Sbjct: 75 GIAPIKAEYLVVPPSQVAKTAEVVDDDAAEGRTAPDAETGAAGKDGKKKRP--KGQNKER 132
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCYVF 119
F C + CK+G++C +HD ++K +P+ +C V+
Sbjct: 133 EFGIFADAQRLCNSVAWTPEFSPRNCKHGDRCNALHDIRKYLKEGRRPDLKVFGGKCPVW 192
Query: 120 LQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTV-NMLANEVRQDLRKH 177
HG C G C F SH+ E + KE VL E + + +T ++ E D R
Sbjct: 193 ETHGKCSSGWRCLFVESHMKEIEHEDGRKELVLTEDPSKIKPETTPSVPPEEESMDARAG 252
Query: 178 TYNF-EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
YN + K+ K ++E D +DS++ + DDV K
Sbjct: 253 VYNVVAPAVKLALSRKKIQHEKSDQYLKWMAKDSELARIHYHKQK-DDDDVAKDYAAMYV 311
Query: 237 GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
P L K SEK++I + + L+PLTT GNLPFRRLC + GA+IT SEMA+
Sbjct: 312 EPPL-------KPSEKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLP 364
Query: 296 LLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLTKCTQL 334
LL+ +W L++ HESE DL FGVQ+ N P++ K +
Sbjct: 365 LLQGQKADWTLMRAHESEITPPRYTPTGMVDPLYDNSKDLKFGVQITANAPWIAIKSAET 424
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPI+ +YK G+GS LL + + G N
Sbjct: 425 LSRYLPHLRVIDLNCGCPIDMVYKSGAGSALLDAPSKLERMIRGMN-------------- 470
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
T EV P+T K R GI D
Sbjct: 471 -------------------------------------TVSGEV---PVTAKIRMGIRDDR 490
Query: 454 NIIHNFM-------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
+ P R G + +TLHGRTR+QRYTK ADW YI +CA L N
Sbjct: 491 LTAQKLVERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSFN 550
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
++ R+ + GR GNGD S+
Sbjct: 551 KTSNSLQDTIREADERTLPNGGRMY------------------------FVGNGDCYSHV 586
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
DY + + + VM+GRGA+IKPWIF+EI + D
Sbjct: 587 DYFNHVDNA-GVDSVMVGRGAIIKPWIFEEISAGQYLD 623
>gi|239612845|gb|EEQ89832.1| tRNA-dihydrouridine synthase 3 [Ajellomyces dermatitidis ER-3]
Length = 737
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 186/657 (28%), Positives = 280/657 (42%), Gaps = 149/657 (22%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK+E+++E S + + D + + E +G + ++ ++ GQN
Sbjct: 60 GVAPIKKEYLIEVSPGAAQASPRAIPDDDAAEAAKHH-EQEGNSGRQKGGKREKKGGQNT 118
Query: 63 ARGPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE--- 114
R TF + +D C + C +G+ CKF HD ++K K D+
Sbjct: 119 KR--TF-GRSQDAKQLCQTVAYHSEFSPKPCPWGKSCKFEHDIRKYLKDYKRADLDTFGG 175
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGG-NIVKEDVLKEWKNTVGNKT----------V 163
C V+ G CP G CRF SH+ E + KE VL E + + N T V
Sbjct: 176 VCPVWGAKGRCPAGWKCRFVGSHMAERETEDGRKELVLVEDASRMKNPTSENGIGIDGAV 235
Query: 164 NMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
N+++ E + L K Y K++ D + K + GR N
Sbjct: 236 NVVSTEDKLALAKKRYKTPKADSYTT-----------WIDTVSREVEKKLHGR------N 278
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKN-----------SEKKKIDWQGKL-YLSPLTTVGN 271
DD V ++T D K N SEK+++ + + L+PLTT GN
Sbjct: 279 QDDTASVPDKTDGQGAFDIKDEKEDNRAQYTEPPFLPSEKRRVYFGPETPVLAPLTTQGN 338
Query: 272 LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------- 315
LPFRRLC GA +T SEMA++ L++ S EWAL+K HESE L
Sbjct: 339 LPFRRLCVDLGAQLTYSEMAMSMSLVQGSKSEWALMKAHESEILPPTVNPQQTIVKDYDN 398
Query: 316 -----FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
FGVQ+ GN P+V + T+ L + +D+N GCPI+ ++++GSGS LL A+
Sbjct: 399 SRDLKFGVQITGNKPWVALRATEALTALCPHLRVIDMNCGCPIDMVFREGSGSALLDHAS 458
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
E+M+ V+ PI + G+ +++ +
Sbjct: 459 KL--------------------EKMLRGMNAVSGEIPITAKIRMGTKDSNPTATKLVERL 498
Query: 430 I---TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
I +E+ P G + ITLHGR+R+QRY++QA
Sbjct: 499 ICGGVESHEIGQGPA-------------------------GVAAITLHGRSRQQRYSRQA 533
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW+YI +CA L R N D I K+ D Y ++
Sbjct: 534 DWEYISQCAALVKRLNEQT--------DIAIDTI------------KEPDARYQPAAGKV 573
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY ++KS + VM+ RGAL+KPWIF+E+++ + D A
Sbjct: 574 F----FLGNGDCYSHEDYFNGIQKS-GVDTVMVARGALMKPWIFEEVEKGQYLDKSA 625
>gi|322695939|gb|EFY87739.1| tRNA-dihydrouridine synthase 3 [Metarhizium acridum CQMa 102]
Length = 764
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 168/571 (29%), Positives = 241/571 (42%), Gaps = 136/571 (23%)
Query: 87 QTCKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENG 142
CK+G++C+ HD +++ + ED+ +C VF Q+G C G CRF SH+ E
Sbjct: 166 HPCKFGDECRMSHDLRKYLEEGRREDVEAFGGKCPVFEQYGVCFSGWKCRFVKSHMKE-- 223
Query: 143 GNIVKEDVLKEW-------------KNTVGNKT----------------------VNMLA 167
+ ED KE +N N T N ++
Sbjct: 224 --LEHEDGRKELVLIDNSNMTKSNGENGASNGTKPTPTPTKVADGDELDARRAGIYNNVS 281
Query: 168 NEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
+ DL + +F K+++ K N K+Q + EG E++ D
Sbjct: 282 MSTKIDLNRKRIDFTKADEYIKWMDDEATLNNAFHHRRKDQSN---EGIEDLRAQFVDPP 338
Query: 228 IKVQEETK--SGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
K E+ + GP T L+PLTT GNLPFRRLC + G ++
Sbjct: 339 FKPSEKRRLYFGPETPT--------------------LAPLTTQGNLPFRRLCVELGCEL 378
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVD 345
T SEMA+ LL+ + +W L+K HESE +N YV
Sbjct: 379 TYSEMAMGMPLLQGTKADWTLLKAHESEIQPPAFKPSSNNYVFENYDN------------ 426
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLG 404
R FG Q+ GN P+V+TK +L + +D+N G
Sbjct: 427 --------------------SRDLRFGAQISGNQPWVVTKAADVLNRYCPHLRLIDLNCG 466
Query: 405 CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF 463
CPI+ ++K G GS LL+ L+ +I MN +S +PIT K RTG+ + + K
Sbjct: 467 CPIDMVFKSGGGSALLESQGKLERMIRGMNAMSGEIPITAKIRTGVKSSRPTAPSVISKL 526
Query: 464 ----RDW-------GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
R+ G + +TLHGR+REQRYTK+ADW YI +CA L N
Sbjct: 527 AFGSREHRERLGAPGCAALTLHGRSREQRYTKRADWSYIGECAALIKTYNEQKDALADTA 586
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
+ AS TL + Y GNGD S+ +Y E + KS
Sbjct: 587 AEPDAS--TLPNSKDGRMY--------------------FLGNGDCYSHTEYFEHVSKS- 623
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ VMIGRGALIKPW+F+EI++ + D A
Sbjct: 624 RVDTVMIGRGALIKPWLFEEIQQGQYLDKSA 654
>gi|154282833|ref|XP_001542212.1| hypothetical protein HCAG_02383 [Ajellomyces capsulatus NAm1]
gi|187471044|sp|A6QYC6.1|DUS3_AJECN RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|150410392|gb|EDN05780.1| hypothetical protein HCAG_02383 [Ajellomyces capsulatus NAm1]
Length = 741
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 181/645 (28%), Positives = 283/645 (43%), Gaps = 126/645 (19%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA +K+E+++E S + + D + + +D G AK+K ++ K+ GQN
Sbjct: 65 GVAPVKKEYLIEVSQSTGQASPRAIADDDAAEAAKHHEKDGGGAKQKGRREKK--GGQNI 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
R TF ++ C C +G+ CKF HD ++K+ K D+
Sbjct: 123 KR--TFGRSQDEKQLCQTVAYYPEFSPNPCAFGKSCKFEHDIRKYLKNYKRADLDTFGGV 180
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGNK-----TVN 164
C V+ G CP G CRF SH+ E ++ ED + T N VN
Sbjct: 181 CPVWEAKGRCPSGWKCRFVGSHMAERETEDGRKELVLVEDASRMRHPTSTNGIEVDGVVN 240
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
++ E + L K Y K++ + S+ ++ +++ + V + T +
Sbjct: 241 VVTTEAKLALAKKRYQTPKADSYTTWIDTVSREVERNLHGRNQDEAASVPGNADGQGTSD 300
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+ D ++E + + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 301 SKD----RKEDNRAQYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLG 353
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 354 AQLTYSEMAMSMSLVQGSKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQIT 413
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V + T+ + Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 414 GNKPWVALRATEAMTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL------- 464
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
E+M+ V+ PI + G+ +++ +I M V S
Sbjct: 465 -------------EKMLRGMNAVSGEIPITAKIRMGTKDSNPTATKLIERLI--MGGVES 509
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
I G + ITLHGR+R+QRY++QADW+YI +CA L
Sbjct: 510 HEIGRGPA--------------------GVAAITLHGRSRQQRYSRQADWEYISQCAALV 549
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R N D G I K+ D ++ GNGD
Sbjct: 550 KRLNEQT--------DIGTDTI------------KEPDARDQPSAGKVF----FLGNGDC 585
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+EDY ++KS + VM+ RGAL+KPWIF+EI++ + D A
Sbjct: 586 YSHEDYFNGIQKS-GVDTVMVARGALVKPWIFEEIEKGQYLDKSA 629
>gi|148706255|gb|EDL38202.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 351
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 51/233 (21%)
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q
Sbjct: 61 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQ 120
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
++ +NEV +P+TVK RTG+ + ++ H +P+ RDWG +L+TLHGR+REQRYT+ ADW
Sbjct: 121 IVRGVNEVLDVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADW 180
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YIE+CA++ S
Sbjct: 181 PYIEQCAKV-------------------------------------------------AS 191
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 192 PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIKEQRHWDI 242
>gi|322712093|gb|EFZ03666.1| tRNA-dihydrouridine synthase 3 [Metarhizium anisopliae ARSEF 23]
Length = 782
Score = 198 bits (503), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 171/577 (29%), Positives = 242/577 (41%), Gaps = 155/577 (26%)
Query: 87 QTCKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDE-N 141
CK+G++C+ HD +++ + ED+ +C VF Q+G C G CRF SH+ E
Sbjct: 168 HPCKFGDECRMSHDLRKYLEEGRREDVETFGGKCPVFEQYGVCFSGWKCRFVKSHMRELE 227
Query: 142 GGNIVKEDVLKEWKNTV-GNKT----------------------VNMLANEVRQDLRKHT 178
+ KE VL + NT N T N +A + DL +
Sbjct: 228 HEDGRKELVLIDNSNTTESNGTEPMPTSTKVSGGDELDERRAGIYNNVAMSTKIDLNRKR 287
Query: 179 YNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK--S 236
+F K+++ K N K+Q + EG E++ D K E+ +
Sbjct: 288 IDFAKADEYIKWMNDEATLNNSFHHRRKDQSN---EGIEDLRAQFVDPPFKPSEKRRLYF 344
Query: 237 GPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
GP T L+PLTT GNLPFRRLC + G ++T SEMA+ L
Sbjct: 345 GPETPT--------------------LAPLTTQGNLPFRRLCVELGCELTYSEMAMGMPL 384
Query: 297 LKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY 356
L+ + +W L+K HESE +N YV
Sbjct: 385 LQGTKADWTLLKAHESEIQPPAFKPSSNNYVFENYDN----------------------- 421
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGS 415
R FG Q+ GN P+++TK +L + +D+N GCPI+ ++K G
Sbjct: 422 ---------SRDLRFGAQISGNQPWIVTKAADVLNRYCPHLRLIDLNCGCPIDMVFKSGG 472
Query: 416 GSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT-L 473
GS LL+ L+ +I MN +S +PIT K RTG+ R S+I+ L
Sbjct: 473 GSALLESQGKLERMIRGMNAMSGEIPITAKIRTGVKSS-----------RPTAPSVISKL 521
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
+RE R A G + +TLHGR+REQRYTK
Sbjct: 522 AFGSREHRERLGAP----------------------------GCAALTLHGRSREQRYTK 553
Query: 534 QADWDYIEKCAQL-------------------CSPAP--------LYGNGDILSYEDYTE 566
+ADW YI +CA L S P GNGD S+ +Y E
Sbjct: 554 RADWSYIGECAALIKTYNEQRDALADTAAEPDASTLPNSKDGRMYFLGNGDCYSHTEYFE 613
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ KS + VMIGRGALIKPW+F+EI++ + D A
Sbjct: 614 HVSKS-RVDTVMIGRGALIKPWLFEEIQQGQYLDKSA 649
>gi|149028167|gb|EDL83605.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_b
[Rattus norvegicus]
Length = 304
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 51/233 (21%)
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q
Sbjct: 14 DIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQ 73
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
++ MNEV +P+TVK RTG+ + ++ H +P+ R+WG +L+TLHGR+REQRYT+ ADW
Sbjct: 74 IVRGMNEVLDVPLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRLADW 133
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YIE+CA++ S
Sbjct: 134 PYIEQCAKV-------------------------------------------------AS 144
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 145 PMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIKEQRHWDI 195
>gi|223997918|ref|XP_002288632.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975740|gb|EED94068.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 378
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 184/369 (49%), Gaps = 119/369 (32%)
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
E+K ID++ K+Y++PLTTVGNLPFRR+ K +GADITC EMA+A +LL+ P EWAL+KRH
Sbjct: 5 ERKLIDFRNKVYIAPLTTVGNLPFRRIMKGFGADITCGEMAIADQLLQGKPSEWALLKRH 64
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLL--EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
SED+FGVQ+ + T+ +L+ E ++ VDFVD+NLGCPI+ + ++G+G+ L+ R
Sbjct: 65 SSEDVFGVQIATGHADQYTRVAELIANEPEIEVDFVDMNLGCPIDLVCEKGAGASLMLR- 123
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
E ++ +GS GL + N
Sbjct: 124 ----------------------ERKL------------------KGSVEGLTKTLNC--- 140
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW---GASLITLHGRTREQRYTKQ 485
P+T+K RTG +++ I H + + W G + +HGR+R QRY++
Sbjct: 141 -----------PVTIKIRTGWNENEPIAHKLVQTIQAWGYDGIGAVMIHGRSRLQRYSRL 189
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
A+WDYI + A+ C N +H
Sbjct: 190 ANWDYIAEVAK-CQAAN--LHQI------------------------------------- 209
Query: 546 LCSPAPLYGNGDILSYEDYTESLKK-----------SPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGD+ SY DY +++ K SP+ M+GRGALIKPW+ EIK
Sbjct: 210 -----PVIGNGDLFSYTDYEQNVLKRVNDCDDSNCLSPT---AMLGRGALIKPWLPTEIK 261
Query: 595 EKKLFDIYA 603
E++ +DI A
Sbjct: 262 ERRHWDISA 270
>gi|426386785|ref|XP_004059861.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
isoform 2 [Gorilla gorilla gorilla]
Length = 407
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/357 (34%), Positives = 172/357 (48%), Gaps = 113/357 (31%)
Query: 248 KNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
K + ++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 52 KTCRETELDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAV--------------- 96
Query: 308 KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
CT LL+ QM S LL+R
Sbjct: 97 -----------------------CTNLLQGQM--------------------SEWALLKR 113
Query: 368 ---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
++FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+
Sbjct: 114 HQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRST 173
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
Q ++ MN+V L +++ + ++ + + W L LHGR+REQRYTK
Sbjct: 174 KFQQIVRGMNQVLRLCLSLSLSAWLSWSLSLCVSLSASYPAW-RLLPQLHGRSREQRYTK 232
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 233 LADWQYIEECVQ------------------------------------------------ 244
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 245 -AASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 298
>gi|407925143|gb|EKG18162.1| Zinc finger CCCH-type protein [Macrophomina phaseolina MS6]
Length = 765
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 198/662 (29%), Positives = 287/662 (43%), Gaps = 177/662 (26%)
Query: 5 GVAKIKQEFIVED----HVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
GVA IK E++V+ H +V++ + + D V +DG K K K +GQ
Sbjct: 100 GVAPIKPEYLVDPASLRHGRVVAQK--DPDDDAAEASKHVAEDGEQKAGKKGKKNKERGQ 157
Query: 61 NKARGPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDIS-- 113
NKAR KP D C + + C++G KCK+ HD ++K K ED+S
Sbjct: 158 NKARE---YGKPRDALQLCSTVAFSNEFSPKECQFGAKCKYEHDIRKYLKEGKREDLSTF 214
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKE----------WKNTVGNKT 162
+ C V+ G+C G CR +H +E + KE VL E K +G++
Sbjct: 215 KICPVWDVRGWCSAGWKCRLAGTHSEEVTHPDGRKELVLIEDPERKARADKAKAELGDEL 274
Query: 163 --VNMLANEVRQDLRKHTYNFEKS----EKICKENKASKNENKDTDDCCKNQDSKVIEGR 216
VN+++ + + DL K K+ E + + N+ +K T D DSK + R
Sbjct: 275 GHVNVVSPQAKIDLSKKKTKTPKADAYLEYLNQFNEEAKRAAGPTTD---ESDSK--QAR 329
Query: 217 EEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFR 275
E+ + K P L SEK++I + + L+PLTT GNLPFR
Sbjct: 330 EDNRA-----------QYKEPPFLP--------SEKRRIYYGPETPVLAPLTTQGNLPFR 370
Query: 276 RLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE--------------------DL 315
RLC GA +T SEMA+ L++ + EWALIK HESE DL
Sbjct: 371 RLCVDLGAQVTWSEMAMGMPLVQGAKSEWALIKAHESEATPPRFLGKNDVVAGYDNSRDL 430
Query: 316 -FGVQLCGNNPYVLTKCTQLLEE-QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
FG Q+ GN P++ K ++L + +D+N GCPI+ +Y+QG+GS LL
Sbjct: 431 KFGAQIAGNKPWIALKTVEVLTALAPTLRAIDLNCGCPIDLVYRQGAGSALLDAHGKLDK 490
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
L G N + EQ+
Sbjct: 491 MLRGMN---------AVSEQI--------------------------------------- 502
Query: 434 NEVSSLPITVKTRTGIHKDNN-----IIHNFM---PKFRDW-----GASLITLHGRTREQ 480
PITVK R G+ KDN ++ + P+ R G + ITLHGR+R+Q
Sbjct: 503 ------PITVKIRMGV-KDNEPTAEKLVQRLVLGTPEARKSGDGPCGVAAITLHGRSRQQ 555
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
RYT+ ADW YI + A L R N R + AD D
Sbjct: 556 RYTRSADWGYISEVAALIKRLNA----------------------ERAEAIDTAADVD-- 591
Query: 541 EKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
L + +Y GNGD S+ DY ++ ++ + VM+ RGALIKPWIF+EI++++
Sbjct: 592 --PRHLPNGGKVYFVGNGDCYSHADYFRAVNEN-KVDSVMVARGALIKPWIFEEIEKEQY 648
Query: 599 FD 600
D
Sbjct: 649 LD 650
>gi|429853650|gb|ELA28710.1| tRNA dihydrouridine [Colletotrichum gloeosporioides Nara gc5]
Length = 766
Score = 196 bits (498), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 170/565 (30%), Positives = 250/565 (44%), Gaps = 142/565 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMK-SKPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDENG 142
+ C++G++C VHD ++K + ED+ + +C VF + G CP G CRF SH+ E
Sbjct: 186 RECRFGDRCNLVHDLRKYLKEGRREDLDTFAGKCPVFEEWGICPSGWKCRFVKSHMKE-- 243
Query: 143 GNIVKED------VLKEWKNTVGNKTVNMLANEVRQDLRKHTYN-FEKSEKICKENKASK 195
+ ED +++E K T G+ V R+DLR YN E KI K
Sbjct: 244 --VEHEDGRKELVLVEEPKKTTGDAPVEA----GREDLRPGVYNNTENQLKIDLSRKRID 297
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
D N+D+++ +E + D I ++ ++ V +K SEK+++
Sbjct: 298 FTETDKYITWMNKDTRL---GDEFHQRRKDQRIGNNDDLRAQYVEPP----LKPSEKRRL 350
Query: 256 DWQGK--LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+ GK L+PLTT GNLPFRRLC GA +T SEMA+ L++ +WAL+K HESE
Sbjct: 351 -YFGKETPALAPLTTQGNLPFRRLCVDLGAQLTYSEMALGMPLVQGVKNDWALMKAHESE 409
Query: 314 ---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGC 350
DL FG Q+ GN + K LL + + +D+N GC
Sbjct: 410 ISPPKVNPESASIVKGYDNSRDLKFGAQISGNQAWHCVKSADLLSRFVPHLRLIDLNCGC 469
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI+ IYK G GS LL+
Sbjct: 470 PIDMIYKSGGGSALLE-------------------------------------------- 485
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFR----- 464
G L+R ++ MN VS +PITVK RTG+ + + + K
Sbjct: 486 -----SHGKLER------MVRGMNTVSGEIPITVKLRTGVKSNRPTASSIIGKLAFGSRE 534
Query: 465 ------DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
G + ITLHGR+REQRYTK+ADW YI +CA + N R+ S
Sbjct: 535 NRERAGAPGCAAITLHGRSREQRYTKKADWSYIAECAVMIKDYNEQKDKLTDTAREPDES 594
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
+ +++ R GNGD S+ +Y E ++K+ + +M
Sbjct: 595 TLP---NSKDGRMF-------------------FLGNGDCYSHIEYYEHIEKA-KVDTIM 631
Query: 579 IGRGALIKPWIFQEIKEKKLFDIYA 603
IGRGAL+KPW+F+EI++ + D A
Sbjct: 632 IGRGALVKPWLFEEIEKGQYLDKSA 656
>gi|350296901|gb|EGZ77878.1| FMN-linked oxidoreductase [Neurospora tetrasperma FGSC 2509]
Length = 737
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 264/639 (41%), Gaps = 134/639 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK+E++V +V + + D + + T K+ KK KGQNK R
Sbjct: 74 GIAPIKKEYLVVPPSQVAKTAEIVDDDAAEGRTAPGAEAATGKEGKKKRP---KGQNKER 130
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCYVF 119
F C + CK+GE+C +HD ++K +P+ +C V+
Sbjct: 131 EFGIFADAQRLCNSVAWTPEFSPRHCKHGERCNALHDIRKYLKEGRRPDLNVFGGKCPVW 190
Query: 120 LQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTVNMLA-NEVRQDLRKH 177
HG C G C F SH+ E + KE VL E + + +++ E D R
Sbjct: 191 ETHGKCSSGWRCLFVESHMKEIEHEDGRKELVLTEDPTKIKPEAASLVPPEEESMDARAG 250
Query: 178 TYNF-EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
YN + K+ K ++E D +DS++ + DDV K
Sbjct: 251 VYNVVAPAVKLALSRKKIQHEKSDQYLKWMAKDSELARIHYHKQK-DDDDVAKDYASQYV 309
Query: 237 GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
P L K SEK++I + + L+PLTT GNLPFRRLC + GA+IT SEMA+
Sbjct: 310 EPPL-------KPSEKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLP 362
Query: 296 LLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLTKCTQL 334
LL+ +W L++ HESE DL FGVQ+ + P++ K +
Sbjct: 363 LLQGQKADWTLMRAHESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAET 422
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPI+ +YK G+GS LL + + G N
Sbjct: 423 LARYLPHLRVIDLNCGCPIDMVYKSGAGSALLDAPSKLERMIRGMN-------------- 468
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
T EV P+T K R G+ +DN
Sbjct: 469 -------------------------------------TVSGEV---PVTAKIRMGV-RDN 487
Query: 454 NIIHNFM--------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
++ + P R G + +TLHGRTR+QRYTK ADW YI +CA L
Sbjct: 488 HLTAQKLVERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSF 547
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
N + R+ + GR GNGD S+
Sbjct: 548 NEKTDSLQDTIREADERSLPNGGRMY------------------------FVGNGDCYSH 583
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
DY + + + + VM+GRGA+IKPWIF+EI+ + D
Sbjct: 584 VDYFDHVDNA-KVDSVMVGRGAIIKPWIFEEIRAGQYLD 621
>gi|402077899|gb|EJT73248.1| tRNA-dihydrouridine synthase 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 720
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 180/652 (27%), Positives = 283/652 (43%), Gaps = 171/652 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-AKKKFKKNKQVLKGQNKA 63
G+A IK E++++ V +D R + + + + T K ++ KGQN+A
Sbjct: 69 GLAPIKAEYLID----------VVPSDHRNVPDDDAAEGRTPTDAPVKVGRKGKKGQNQA 118
Query: 64 RGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM----KSKPEDISEQC 116
R F ++ C D + C +G++C HD ++ ++ + +C
Sbjct: 119 R--DFGRSNDNFRLCQSRMTSDEFSPKPCNFGDRCNLSHDLRRYLAEGRRADLDTFGGKC 176
Query: 117 YVFLQHGYCPMGIACRFGSSHLDE----NGGN--IVKEDVLKEWKN-TVGNKTVNMLANE 169
+F HG+C G CRF SH++E +G ++ D +E +N T VN++A E
Sbjct: 177 PIFEAHGWCNAGWKCRFVKSHMNEVEREDGKKELVLVRDASREQQNDTESFGVVNVVAAE 236
Query: 170 VRQDLRKHTYNFEKS-EKICKENKASKN----ENKDTDDCCKNQDSKVIEGREEINTPNT 224
+ + ++ + +KS E + +K SK N T++ + +DS++ E R + P
Sbjct: 237 HKHKMSRNKLDLKKSIEYVAWLDKHSKLIKDLHNARTEE--RKKDSELSELRAQYTEP-- 292
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGA 283
++ SEK+++ + + L+PLTT GNLPFRRLC + GA
Sbjct: 293 ---------------------PLRPSEKRRVYFGRETPVLAPLTTQGNLPFRRLCVELGA 331
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESE----------------------DL-FGVQL 320
T SEMA+A L++ EWAL+K HESE DL FG Q+
Sbjct: 332 QGTYSEMAMAMPLVQGKQGEWALMKAHESETKPPRFTPRPEDPVVKVYDNSRDLKFGAQI 391
Query: 321 CGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
++ V K + L + + +D+N GCPI+ +YK G+GSGLL++ N
Sbjct: 392 SASSHTVAAKAAECLSTFLPHLRLIDLNCGCPIDLVYKSGAGSGLLEQPN---------- 441
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
IE I ++++ T EV
Sbjct: 442 --------------------------KIERI---------------VRAMNTVSGEV--- 457
Query: 440 PITVKTRTGI-------HKDNNIIHNFMPKFRDW----GASLITLHGRTREQRYTKQADW 488
PIT K R G+ K+ + P FR G + ITLHGRTR+QRY K ADW
Sbjct: 458 PITAKLRIGVKEGFATAKKNIERLAFGAPDFRAEMGAPGCAAITLHGRTRQQRYKKPADW 517
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YI +CA L +R+ G +L +D Y
Sbjct: 518 SYIAECAALVQ-----------SYREAGDALADTASAPDPNTMAGGSDRMY--------- 557
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ DY +++ ++ + VM+ RGALIKPWIF+EI++ + D
Sbjct: 558 ---FLGNGDCFSHIDYFKAVDEA-GVDTVMVARGALIKPWIFEEIEKGQYLD 605
>gi|444323675|ref|XP_004182478.1| hypothetical protein TBLA_0I03030 [Tetrapisispora blattae CBS 6284]
gi|387515525|emb|CCH62959.1| hypothetical protein TBLA_0I03030 [Tetrapisispora blattae CBS 6284]
Length = 667
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 160/576 (27%), Positives = 250/576 (43%), Gaps = 146/576 (25%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQT-CKYGEKCKFVHDKNVFMK-SKPEDISE- 114
+GQNK R K ++ CP L L QT C E C+ HD + ++ KPE I+
Sbjct: 96 RGQNKDRD-NRQPKEQNALCPNL---VLGQTTCPRRETCRHEHDVSKYLSLKKPEIITSY 151
Query: 115 --QCYVFLQHGYCPMGIACRFGSSH---LDENGGNIVKEDVLKEWKNTV----------- 158
C F GYCPMG CRF S+H ++ N D+ + + +
Sbjct: 152 FPTCPNFSTLGYCPMGFRCRFLSTHSANTTDSSTNNPNSDLHADPQPQLLPNAAMSAENP 211
Query: 159 ---GNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEG 215
N +N + + +++L + F KS+ + ++E
Sbjct: 212 LWLANHEINKIDPQKKRELARKQIAFVKSDFVVD----------------------IMEA 249
Query: 216 REEINTPNTDDV---IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
PN + V + Q++ + + + EKK +D GK L+PLTTVGNL
Sbjct: 250 LRNAPIPNANPVSGPTQSQQDRRKELINKYKDTRFFAQEKKPLDLHGKKILAPLTTVGNL 309
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL-FGVQLCGNNPYVLTKC 331
P+RRL +K GAD+T SEMA+A +++ + EWAL H SE +G+QL + P+ K
Sbjct: 310 PYRRLMRKLGADVTYSEMALALPMIQGTSAEWALPTSHISESQGYGIQLACSKPWQAAKA 369
Query: 332 TQL----LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCT 387
+ L+ A+ +++N GCPI+ +++QG+G +++ NP L +C
Sbjct: 370 CEAISTCLDTTSAISEINLNSGCPIDLLHRQGAGCAMME------------NPAKLIRC- 416
Query: 388 QLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTR 446
+ MN S+ +PIT+K R
Sbjct: 417 ------------------------------------------LNAMNYTSNDIPITLKLR 434
Query: 447 TGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
TG ++ I + + ++ + TLHGR+R+QRYT+ ADW+YI + A
Sbjct: 435 TGAKDNHPIADTLITRIVQETDVAAFTLHGRSRQQRYTRDADWNYISQTA---------- 484
Query: 506 HNFMPKFRDWGASLITLHGRTREQ-RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDY 564
A+L R EQ R + D D + Q GNGDI +Y+D+
Sbjct: 485 -----------AAL-----RMAEQTRLENKDDRDSSQSRIQFV------GNGDIDNYQDW 522
Query: 565 TESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
L +I +M+ R ALIKPWIF+EI ++ D
Sbjct: 523 HRILDSDSNIDSLMVARSALIKPWIFEEIDAQQHLD 558
>gi|452983221|gb|EME82979.1| hypothetical protein MYCFIDRAFT_153683 [Pseudocercospora fijiensis
CIRAD86]
Length = 742
Score = 195 bits (495), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 162/557 (29%), Positives = 246/557 (44%), Gaps = 133/557 (23%)
Query: 88 TCKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGG 143
TC +G +CK HD ++K K ED+ QC +F Q G C G CR+ SH G
Sbjct: 166 TCSFGARCKHEHDVRRYLKHGKREDMQTFNGQCPIFEQKGKCRDGWKCRWAMSH----GK 221
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
I ED KE V ++ N LA + D ++E+
Sbjct: 222 EIEHEDGRKELVQIVKDE-ANALAEHGKADC--------------------EDEDSVGVV 260
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIK--------------IKN 249
+ K+I +++ TP +D ++K ++T++G D+ K ++
Sbjct: 261 NVVSNADKIILRKKKWPTPKSDKMVKWLDQTQTGGD-DSKQAKEERQNNAARFTEPPLRP 319
Query: 250 SEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK 308
SEK++I + + L+PLTT GNLP+RRLC + GA +T SEMA+ L++ QEWAL+K
Sbjct: 320 SEKRRIYYGPETPVLAPLTTQGNLPYRRLCVELGAQVTWSEMAMGLPLIQGEKQEWALVK 379
Query: 309 RHESE-------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
HESE D+ FGVQ+ N P++ K T+ L + +D+N
Sbjct: 380 AHESELQSPAYFPKNIVHDYDNSKDIRFGVQMAANKPWLALKTTECLTALCPNLRAIDLN 439
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL E+++ V+ PI
Sbjct: 440 CGCPIDLVYRTGAGSALLDAHGKL--------------------EKILRGMNTVSGEVPI 479
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG 467
+ G+ + + Q +I +E + N P G
Sbjct: 480 TVKIRMGTKDKVPTAEKLCQKLILGGHEAQDM------------------NLGPA----G 517
Query: 468 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527
+ ITLHGR+R+QRYT+ ADW+YI +CA L K R A +
Sbjct: 518 VAAITLHGRSRQQRYTRSADWEYIAECATLVK-----------KLRADSA---------K 557
Query: 528 EQRYTKQADWDYIEKCAQLCSPAPLY-GNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
Q ++ D P + GNGDILS+ DY E + + + +MIGRGAL+K
Sbjct: 558 AQDTIREPD---ARDMPNTSDGLPYFCGNGDILSHIDYNEHISNA-KVDSIMIGRGALVK 613
Query: 587 PWIFQEIKEKKLFDIYA 603
PW+F+EI++ + D A
Sbjct: 614 PWVFEEIEKNQYLDKSA 630
>gi|187471073|sp|Q2HDP2.2|DUS3_CHAGB RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
Length = 713
Score = 195 bits (495), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 173/597 (28%), Positives = 257/597 (43%), Gaps = 159/597 (26%)
Query: 58 KGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE- 114
+GQNK R TF C + CK+G++C +HD ++K + DI+
Sbjct: 107 RGQNKEREFGTFSDAQRLCNTIAWTPEFSPRPCKHGDRCNALHDLRKYLKEGRRPDITTF 166
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL------------KEWKNTVGN 160
+C V+ ++G CP G C F SH+DE + +++ +E +
Sbjct: 167 GGKCPVWEKYGKCPSGWRCLFVHSHMDEIKHEDGRSELVLVGDASKAPEGGEEAAGEIKP 226
Query: 161 KTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKA-SKNENKDTDDCCKNQDSKVIEG 215
VNM+ ++ DL K EKSE+ + K+ K +K+ K DD D +
Sbjct: 227 GVVNMVPVGIKYDLSKKRIPLEKSEQYLAWLAKDTKHLAKHYQKHKDDETNPNDYRA--- 283
Query: 216 REEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPF 274
+ + P K SEK+++ + + L+PLTT GNLPF
Sbjct: 284 -QYVEPP------------------------FKPSEKRRLYFGRETPVLAPLTTQGNLPF 318
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQL 334
RRLC + GA +T SEMA+ LL+ +W L++ HESE
Sbjct: 319 RRLCVELGAQVTYSEMALGLPLLQGLKADWTLMRAHESE--------------------- 357
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
+ N G PI Y + FG Q+ N P+V K T+ L + +
Sbjct: 358 ------IVPPRFNPGGPIVQGYDN-------SKDVKFGAQIAANAPWVAVKATEALSQLL 404
Query: 395 V-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKD 452
+ VD+N GCP++ ++K GSGS LL + L+ +I MN VS +PIT K R G
Sbjct: 405 PHLRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEVPITAKIRMG---- 460
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+R+ + T Q +E+ A L S D
Sbjct: 461 ------------------------SRDGKLTAQ---KLVERLA-LGSED----------L 482
Query: 513 RDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLC--------------------- 547
RD G + +TLHGRTR QRYTK ADW YI +CA L
Sbjct: 483 RDMIGAPGCAAVTLHGRTRLQRYTKAADWGYIAECAALIKQFNEKSNDLADTIREADENT 542
Query: 548 --SPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ +Y GNGD S+ +Y + + + + VMIGRGAL+KPW+F+EI++ + D
Sbjct: 543 LPNGGKMYFLGNGDCYSHVEYFDHVDNA-KVDSVMIGRGALVKPWVFEEIEKGQYLD 598
>gi|212533435|ref|XP_002146874.1| tRNA dihydrouridine synthase, putative [Talaromyces marneffei ATCC
18224]
gi|210072238|gb|EEA26327.1| tRNA dihydrouridine synthase, putative [Talaromyces marneffei ATCC
18224]
Length = 716
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 184/659 (27%), Positives = 275/659 (41%), Gaps = 164/659 (24%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEV--EDDGTAKKKFKKNKQVLKGQNK 62
G+A +K EF+V + + NE D V E D KK+ KN+ GQN
Sbjct: 50 GIAPVKPEFLVTFNGNQTETKASNEDDDMAEGAAHVGKEQDQDNKKRKPKNR----GQNV 105
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM-KSKPEDI---SEQ 115
R F ++ C + C+YG+KCKF HD V++ + K E++ ++
Sbjct: 106 GR--KFGRSKDERGLCASRSTQPEFSPDQCQYGDKCKFEHDLRVYLSEHKRENLHTFNDV 163
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL--------KEWKN---TVGNKTVN 164
C V+ G C G CRF SH+ E K +++ K+W + + N
Sbjct: 164 CPVWEVRGTCSSGWKCRFVHSHMTERDTPDGKRELVLVEDEERKKQWTAKPFSNDDGMAN 223
Query: 165 MLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT 224
++ + LR+ Y K+E D K D K + G+ T
Sbjct: 224 VVPIVHKDTLRRRKYPMPKAEAYIAW----------FDQTTKELD-KFVHGKRANETEGA 272
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGA 283
+ + ++E + + SEK+++ + + L+PLTT GN PFRRLC GA
Sbjct: 273 ESEARQEKEDNRAQYTEPPFLP---SEKRRVYFGAETPVLAPLTTQGNTPFRRLCMDLGA 329
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESE--------------------DL-FGVQLCG 322
T SEMA+ L++ EWAL+K HESE D FG Q+
Sbjct: 330 QFTYSEMAMGMPLVQGHKPEWALLKAHESELAPPTISSKANIVQGYDNSRDFKFGAQIAA 389
Query: 323 NNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
N P+V K ++L + +D+N GCPI+ ++K+GSGS LL ++P
Sbjct: 390 NKPHVALKTVEILAALTPHLRVIDLNCGCPIDLVFKEGSGSALL------------DSPS 437
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LP 440
L K ++ MN VS +P
Sbjct: 438 KLEK-------------------------------------------ILRGMNAVSGEIP 454
Query: 441 ITVKTRTGIHKDNNI-------------IHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
ITVK R G KDN I + G + ITLHGR+R+QRYTK AD
Sbjct: 455 ITVKIRMGT-KDNQPTALKLAERLVLGGIDSQTMGIGPPGIAAITLHGRSRQQRYTKNAD 513
Query: 488 WDYIEKCAQLCSR---DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
W YI +CA L R +++++ + + R ++R Y
Sbjct: 514 WGYISECAALVKRLRSESDVLADTV---------------REPDERLQPNGGKIY----- 553
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY + ++ + ++ VMIGRGALIKPW+F+EI+ + D A
Sbjct: 554 -------FLGNGDCYSHEDYNDHVQNA-NVDTVMIGRGALIKPWLFEEIQTGQYLDKSA 604
>gi|358391049|gb|EHK40454.1| hypothetical protein TRIATDRAFT_128481 [Trichoderma atroviride IMI
206040]
Length = 650
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 165/546 (30%), Positives = 234/546 (42%), Gaps = 149/546 (27%)
Query: 89 CKYGEKCKFVHDKNVFM-KSKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C YGEKC+ HD ++ + + ED+ +C F HG+C G CRF SH++E
Sbjct: 107 CPYGEKCRMCHDLRKYLSEGRREDVEALGGKCPAFEAHGFCSSGWKCRFVKSHMEE---- 162
Query: 145 IVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDC 204
I ED KE L + +F K+++ N ++D
Sbjct: 163 IEHEDGRKELIQ-----------------LNRKRIDFTKTDQYITWLNHESNISQDFHHR 205
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YL 263
K+Q G E++ D K SEK+++ + + L
Sbjct: 206 RKDQPEL---GLEDLRARYVDP-------------------PFKPSEKRRLYFGAETPTL 243
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+PLTT GNLPFRRLC + G T SEMA+ LL+ S +W L++ H+SE +
Sbjct: 244 APLTTQGNLPFRRLCVELGCQATYSEMALGMPLLQGSKPDWTLMRAHKSE----ITPPKM 299
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
NP + F D N R FG Q+ G+ +V+
Sbjct: 300 NPGAIPL------------FDDYNH-----------------SRDLKFGAQISGSAHWVV 330
Query: 384 TKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPI 441
TK +L + +D+N GCPI+ ++K G+GS LL+ + ++ +I MN VS +PI
Sbjct: 331 TKAADVLNRFCPHLRLIDLNCGCPIDKVFKSGAGSALLEASGKMERMIRGMNAVSGEIPI 390
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
T K RTG+ KD + K +GA RE R A
Sbjct: 391 TAKIRTGVRKDRPTASQVIGKLA-FGA---------REHRERLGAP-------------- 426
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-------------- 547
G + +TLHGR+REQRYTK ADW YI +CA L
Sbjct: 427 --------------GCAALTLHGRSREQRYTKTADWGYIGECAALIKTYNDEKAKITDTI 472
Query: 548 -----SPAP--------LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
S P GNGD S+ DY E ++K+ + VMIGRGALIKPWIF+EI+
Sbjct: 473 AEPDESTLPNAKDGRMYFLGNGDCYSHVDYYEHIEKA-RVDTVMIGRGALIKPWIFEEIE 531
Query: 595 EKKLFD 600
+ + D
Sbjct: 532 KGQYLD 537
>gi|407838161|gb|EKF99972.1| hypothetical protein TCSYLVIO_009102 [Trypanosoma cruzi]
Length = 529
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 121/385 (31%), Positives = 178/385 (46%), Gaps = 114/385 (29%)
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSE--------KKKIDWQGKLYLSPLTTVGNLPFRRLC 278
V++ EE + ++D+ + K SE +++ ++ KL L+PLTTVGNLPFRR+C
Sbjct: 130 VLQKNEENERDATRNSDLARTKQSEENVRENAVRRRALFKNKLVLAPLTTVGNLPFRRVC 189
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K +GADIT S M++ L EW+L++RHESED+FG+Q+ + P + +E
Sbjct: 190 KGYGADITVSSMSLVHNLNHLQKSEWSLLRRHESEDVFGLQIAVSQPQSAQTWAKAIEAS 249
Query: 339 -MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+ DF+D+N GCP++ I G G GL +R + + D
Sbjct: 250 GYSYDFIDINCGCPVQMIMSAGCGCGLWER-----------------------RDNRLRD 286
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI-I 456
V S L+Q S P+++K R G ++N +
Sbjct: 287 IV-----------------SSLVQH--------------QSKPVSIKCRIGAGANSNASL 315
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H + + WGA +T+HGR R QRYTK A+W+YI+ CA S
Sbjct: 316 HEKIGDYEGWGADAVTIHGRFRAQRYTKLANWEYIDSCAARTS----------------- 358
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P+ GNGDI SYED + ++ P +S
Sbjct: 359 ---------------------------------LPVIGNGDIFSYEDIIDHRERYPHVSS 385
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
MIGRGALIKPWIF+EIK+++ DI
Sbjct: 386 YMIGRGALIKPWIFEEIKQEQPRDI 410
>gi|380480397|emb|CCF42457.1| dihydrouridine synthase [Colletotrichum higginsianum]
Length = 772
Score = 194 bits (492), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 175/593 (29%), Positives = 254/593 (42%), Gaps = 137/593 (23%)
Query: 58 KGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE- 114
KGQNK R F C + CK+G++C +HD ++K + ED+
Sbjct: 160 KGQNKERSFGHFDDALRLCNSRAYTPEFSPRDCKFGDRCNMLHDLRKYLKEGRREDLDTF 219
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW----KNTVGNKTVNMLAN 168
+C +F + G CP G CRF SH+ E + ED KE + N A+
Sbjct: 220 EGKCPIFEKLGTCPSGWKCRFVKSHMRE----VDHEDGRKELVLVDEPKDANSGGEAPAD 275
Query: 169 EVRQDLRKHTYN-FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV 227
R+DLR YN E KI K D N+++++ +E + D +
Sbjct: 276 AGREDLRPGVYNNTENQLKIDLSRKRVDFTETDKYITWMNKEARL---GDEFHQRRKDQM 332
Query: 228 IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGK--LYLSPLTTVGNLPFRRLCKKWGADI 285
E+ ++ V +K SEK+K+ + GK L+PLTT GNLPFRRLC GA +
Sbjct: 333 TSTHEDLRAQFV----DPPLKPSEKRKL-YFGKETPALAPLTTQGNLPFRRLCVDLGAQL 387
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESE---------------------DL-FGVQLCGN 323
T SEMA+ L++ +WAL+K HESE DL FG Q+ G+
Sbjct: 388 TYSEMALGLPLVQGVKNDWALMKAHESEISPPKVNPDSSSIVQGYENSRDLRFGAQISGS 447
Query: 324 NPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
+ K LL + + +D+N GCPI+ ++K G GS LL+
Sbjct: 448 QAWHCVKSADLLNRYVPHLRLIDLNCGCPIDMVFKAGGGSALLE---------------- 491
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPI 441
G L+R ++ MN VS +PI
Sbjct: 492 ---------------------------------AHGKLER------MVRGMNTVSGEIPI 512
Query: 442 TVKTRTGIHKDNNIIHNFMPKF-------RDW----GASLITLHGRTREQRYTKQADWDY 490
TVK RTG+ ++ + K RD G + ITLHGR+REQRYTK+ADW Y
Sbjct: 513 TVKLRTGVRQNRPTATTILGKLAFGSRENRDRLGAPGCAAITLHGRSREQRYTKKADWGY 572
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I +CA + N R+ S + ++ R
Sbjct: 573 IAECAAMIKSYNEQKDEITDTVREPDESTLP---NAKDGRMF------------------ 611
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+ +Y E + K+ + VM+GRGAL+KPW+F+EI++ + D A
Sbjct: 612 -FLGNGDCYSHVEYYEHIDKA-KVDTVMVGRGALVKPWLFEEIEKGQYLDKSA 662
>gi|242778111|ref|XP_002479173.1| tRNA dihydrouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
gi|218722792|gb|EED22210.1| tRNA dihydrouridine synthase, putative [Talaromyces stipitatus ATCC
10500]
Length = 712
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 185/655 (28%), Positives = 273/655 (41%), Gaps = 158/655 (24%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETD--KRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
G+A IK EF+V + + NE D E E D KK+ +KN+ GQN
Sbjct: 48 GIAPIKPEFLVAFNGNQAIPKASNEEDDIAEGAAHAEKEQDQDNKKRKQKNR----GQNV 103
Query: 63 ARGPTFVTKPEDCYCP----FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDI---SEQ 115
R +K E C + + S E C+YGE CKF H+ V+++ K E++ +
Sbjct: 104 GRK-FGRSKDEKGLCASRATYPEFSPAE--CQYGEGCKFEHNLRVYLEHKRENLHTFDDV 160
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL--------KEWKNTV---GNKTVN 164
C V+ G C G CRF SH+ E K +++ ++W +T + N
Sbjct: 161 CPVWQVRGTCSSGWKCRFVHSHMTERDTPDGKRELVLVDDEERKQKWLSTPFAEDDGMAN 220
Query: 165 MLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT 224
++ + LR+ + K+E D K D K + G+ + T T
Sbjct: 221 VVPIVHKDALRRRKFPMPKAEAYVAW----------FDQTAKELD-KFVHGKNK-ETEGT 268
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGA 283
+ + ++E + + SEK+++ + + L+PLTT GN PFRRLC GA
Sbjct: 269 ETEAQQEKEDNRAQYTEPPFLP---SEKRRVYFGAETPALAPLTTQGNTPFRRLCTDLGA 325
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESE--------------------DL-FGVQLCG 322
T SEMA+ L++ EWAL+K H SE D+ FG Q+
Sbjct: 326 QFTYSEMAMGMPLVQGHKPEWALLKAHASELTPPTISSKANVVQGYDHSRDMKFGAQIAA 385
Query: 323 NNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
N P+V K ++L + +D+N GCPI+ ++K+GSGS LL ++P
Sbjct: 386 NKPHVALKTVEILAALTPHLRVIDLNCGCPIDLVFKEGSGSALL------------DSPS 433
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LP 440
L K ++ MN VS +P
Sbjct: 434 KLEK-------------------------------------------ILRGMNAVSGEIP 450
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGA------------SLITLHGRTREQRYTKQADW 488
ITVK R G + + GA + ITLHGR+R+QRYT+ ADW
Sbjct: 451 ITVKIRMGTKDNQPTALRLAERLVLGGADAQTMGIGPPGIAAITLHGRSRQQRYTRSADW 510
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YI +CA L R R +L R E+R Y
Sbjct: 511 GYISECAALVKR-----------LRSQSDALADTV-REPEERLQPNGSKIY--------- 549
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY ++ + ++ VMIGRGALIKPW+F+EI+ + D A
Sbjct: 550 ---FLGNGDCYSHEDYYGHVQNA-NVDTVMIGRGALIKPWLFEEIQAGQYLDKSA 600
>gi|46107564|ref|XP_380841.1| hypothetical protein FG00665.1 [Gibberella zeae PH-1]
Length = 767
Score = 193 bits (491), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 187/654 (28%), Positives = 277/654 (42%), Gaps = 154/654 (23%)
Query: 5 GVAKIKQEFIVE-DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQ-------- 55
G+A IK+E++V+ K +S + VN+ D E GTA + + + +
Sbjct: 97 GIAPIKKEYLVDLSTFKDISTDVVNDDDA-------AEARGTADNEGQGDNRKAGKGKKD 149
Query: 56 ----VLKGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM----K 106
KGQN R F C + C++G++C HD ++ +
Sbjct: 150 KKDKKKKGQNTERDFGKFDDAFRLCNSRAFYPEFSPRECRFGDRCNLSHDLRKYLEEGRR 209
Query: 107 SKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWK--NTVGNKTVN 164
E +C VF HG+CP G CRF SH+ E I ED KE +T N N
Sbjct: 210 GDVETFEGKCPVFEAHGHCPAGWKCRFVKSHMKE----IEHEDGRKELVLISTSANGGEN 265
Query: 165 -MLANEVRQDLRKHTYNFEK-SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP 222
A+E ++ R YN +KI K + + N+++K+ E
Sbjct: 266 GEPADEGSEEKRPAIYNVVGIDKKIALNRKRTDFTQSEQYIGWLNKEAKLSEEFMNRRKN 325
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKW 281
+D+ I+ P K SEK+++ + + L+PLTT GNLPFRRLC +
Sbjct: 326 QSDEGIEDLRARYIDP-------PFKPSEKRRLYFGAETPTLAPLTTQGNLPFRRLCVEL 378
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESE---------------------DL-FGVQ 319
GA +T SEM ++ L++ + +W L+K HESE D+ FG Q
Sbjct: 379 GAQLTYSEMVLSMPLIQGTKADWTLVKAHESEITPPKFNPGSVPIFDNYNHSKDIKFGAQ 438
Query: 320 LCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
+ GNN +V+TK +L + +D+N GCPI+ ++K G GS LL+
Sbjct: 439 ISGNNHWVVTKAADVLNRFCPHLRLIDLNCGCPIDMVFKSGGGSALLE------------ 486
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
SG L+R +I MN VS
Sbjct: 487 -------------------------------------NSGKLER------MIRGMNAVSG 503
Query: 439 -LPITVKTRTGIHKDNNIIHNFMPKF----RDW-------GASLITLHGRTREQRYTKQA 486
+PIT K RTGI + K R+ G + +TLHGR+REQRYTK+A
Sbjct: 504 EVPITAKIRTGIRNSRPTATQLIGKLAFGAREHRERLGAPGCAALTLHGRSREQRYTKKA 563
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW YI +CA L N + + AS + ++ R
Sbjct: 564 DWGYISECAALIKTYNKEKDSLTDTIAEPDASSLP---NAKDGRMY-------------- 606
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ +Y E ++K+ + VMIGRGALIKPW+F+EI++ + D
Sbjct: 607 -----FLGNGDCYSHVEYYEHIEKA-RVDTVMIGRGALIKPWLFEEIEKGQYLD 654
>gi|408400075|gb|EKJ79162.1| hypothetical protein FPSE_00637 [Fusarium pseudograminearum CS3096]
Length = 767
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 190/647 (29%), Positives = 278/647 (42%), Gaps = 140/647 (21%)
Query: 5 GVAKIKQEFIVE-DHVKVLSIECVNETDK---RKLEELEVEDDG--TAKKKFKKNKQVLK 58
G+A IK+E++V+ K S + VN+ D R + E +DD K K K + K
Sbjct: 97 GIAPIKKEYLVDLSTFKDTSTDVVNDDDAAEARGTADNEGQDDNRKAGKGKKDKKDKKKK 156
Query: 59 GQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM----KSKPEDIS 113
GQN R F C + C++G++C HD ++ + E
Sbjct: 157 GQNTERDFGKFDDAFRLCNSRAFYPEFSPRECRFGDRCNLSHDLRKYLDEGRRGDVETFE 216
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWK--NTVGNKTVN-MLANEV 170
+C VF HG+C G CRF SH+ E I ED KE +T N N A+E
Sbjct: 217 GKCPVFEAHGHCSAGWKCRFVKSHMKE----IEHEDGRKELVLISTSANDGENGEPADEG 272
Query: 171 RQDLRKHTYNFEK-SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
++ R YN +KI K + + N+++K+ E +D+ I+
Sbjct: 273 SEEKRPAIYNVVGIDKKIALNRKRTDFTQSEQYIGWLNKEAKLSEEFMNRRKNQSDEGIE 332
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
P K SEK+++ + + L+PLTT GNLPFRRLC + GA +T S
Sbjct: 333 DLRARYVDP-------PFKPSEKRRLYFGAETPTLAPLTTQGNLPFRRLCVELGAQLTYS 385
Query: 289 EMAVATELLKSSPQEWALIKRHESE---------------------DL-FGVQLCGNNPY 326
EMA++ L++ + +W L+K HESE D+ FG Q+ GNN +
Sbjct: 386 EMALSMPLIQGTKADWTLLKAHESEITPPKFNPGSVPIFDDYNHSKDIKFGAQISGNNHW 445
Query: 327 VLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
V+TK +L + +D+N GCPI+ ++K G GS LL+
Sbjct: 446 VVTKAADVLNRFCPHLRLIDLNCGCPIDMVFKSGGGSALLE------------------- 486
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVK 444
SG L+R +I MN VS +PIT K
Sbjct: 487 ------------------------------NSGKLER------MIRGMNAVSGEVPITAK 510
Query: 445 TRTGIHKDNNIIHNFMPKF----RDW-------GASLITLHGRTREQRYTKQADWDYIEK 493
RTGI + K R+ G + +TLHGR+REQRYTK+ADW YI +
Sbjct: 511 IRTGIRNSRPTATQLIGKLAFGAREHRERLGAPGCAALTLHGRSREQRYTKKADWGYISE 570
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
CA L N + + AS + ++ R
Sbjct: 571 CAALIKTYNKEKDSLTDTIAEPDASSLP---NAKDGRMY-------------------FL 608
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ +Y E ++K+ + VMIGRGALIKPW+F+EI++ + D
Sbjct: 609 GNGDCYSHVEYYEHIEKA-RVDTVMIGRGALIKPWLFEEIEKGQYLD 654
>gi|425770630|gb|EKV09098.1| tRNA dihydrouridine synthase, putative [Penicillium digitatum Pd1]
gi|425771936|gb|EKV10364.1| tRNA dihydrouridine synthase, putative [Penicillium digitatum
PHI26]
Length = 729
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 162/553 (29%), Positives = 246/553 (44%), Gaps = 120/553 (21%)
Query: 89 CKYGEKCKFVHDKNVFMKS-KPEDISEQ---CYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C++GEKC+F HD V++K K ED++ C V+ G C G CR SH E
Sbjct: 143 CQFGEKCRFEHDLRVYLKDHKREDLATLNNICPVYEALGKCSSGWRCRMVGSHSTERETE 202
Query: 145 ------IVKEDV--LKEWKNTVGNKT----VNMLANEVRQDLRKHTYNFEKSEKICKENK 192
I+ ED +++ + V N T VN+++NE + L + K E + +
Sbjct: 203 EGKKELILLEDAERMEKARPRVANATPDGIVNIISNEDKMALMR------KREDTPRADA 256
Query: 193 ASKNENKDTDDCCK--NQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
+ + + + K +Q S + E + E+ P+ I +QE L+ + S
Sbjct: 257 YTTWATQVSAELEKAIHQRSTIRE-KGELVEPSEQANIDLQENRAQ--FLEPPFMP---S 310
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK++I + + L+PLTT GN+PFRRLC GA T SEMA++ L++ S EW L+K
Sbjct: 311 EKRRIYFGPETPVLAPLTTQGNMPFRRLCGDLGAQFTYSEMAMSMPLIQGSKSEWTLLKA 370
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
HESE FG Q+ N P+ K T++L + + +D+N
Sbjct: 371 HESEMAPPTVIPGDNIVQGYDNSKDFKFGAQIAANKPWQALKATEVLSKFTPNLRVIDLN 430
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPIE +++ G+GS LL + E+M+ V+ PI
Sbjct: 431 CGCPIELVFRDGAGSALLDHHSKL--------------------EKMIRGMNTVSQEIPI 470
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG 467
+ G+ +++ ++ E S L + G
Sbjct: 471 TVKIRMGTKDNQPTAQKLVERMVLGGYESSVLGLGPP----------------------G 508
Query: 468 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527
A+ ITLHGR+R+QRYT+QADW YI +CA L R N K +D + I R
Sbjct: 509 AAAITLHGRSRQQRYTRQADWGYISECAALIKRLN--------KKQDALSDTI----REP 556
Query: 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587
+ RY Y GNGD S+ DY + + + + VM+ RGALIKP
Sbjct: 557 DARYMPNGGKTY------------FIGNGDCYSHTDYDDHVNNA-GVDSVMVARGALIKP 603
Query: 588 WIFQEIKEKKLFD 600
WIF+EI+ + D
Sbjct: 604 WIFEEIQTGQYLD 616
>gi|346321645|gb|EGX91244.1| tRNA-dihydrouridine synthase 3 [Cordyceps militaris CM01]
Length = 733
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 162/566 (28%), Positives = 234/566 (41%), Gaps = 149/566 (26%)
Query: 89 CKYGEKCKFVHDKNVFM----KSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDE-NGG 143
C++G++C+ HD ++ + E +C VF QHG CP G CRF SH++E
Sbjct: 156 CRFGDRCRLCHDIRQYLAEGRRGDVETFEGKCPVFSQHGRCPSGWKCRFVRSHMEEITRA 215
Query: 144 NIVKEDVLKEWKNTVGNK--------------TVNMLANEVRQDLRKHTYNFEKSEKICK 189
+ KE VL + G VN++ V+ D+ + +F +EK
Sbjct: 216 DGRKELVLVDKSGRDGETNEDGGADVDDARPDVVNIVPMSVKIDMNRKRLDFGDAEKYIA 275
Query: 190 ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKN 249
A N+ KN + E EE D+ + + P L
Sbjct: 276 WMDAESKINQ------KNHHRRKDEAGEEETATAEDNRAQYVDP----PFLP-------- 317
Query: 250 SEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK 308
SEK+++ + + L+PLTT GNLPFRRLC + G +T SEMA+ LL+ +W L+K
Sbjct: 318 SEKRRLYFGRETPTLAPLTTQGNLPFRRLCVELGCQLTYSEMALGMPLLQGVKADWTLMK 377
Query: 309 RHESEDL------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLG 349
H SE + FG Q+ G+ +V TK L + +D+N G
Sbjct: 378 AHTSETVPPTYTSTVPLYDHARDLRFGAQISGSAHWVTTKAASALARFCPHLRLIDLNCG 437
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +YK G GS LL+
Sbjct: 438 CPIDMVYKSGGGSALLE------------------------------------------- 454
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFM-------- 460
G L+R +I MN VS +PIT K RTG+ +
Sbjct: 455 ------SHGKLER------MIRGMNAVSGEVPITAKIRTGVRSSRPTAPTVIDRLAFGSK 502
Query: 461 ---PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
+ G + ITLHGR+REQRYTK ADW YI +C A
Sbjct: 503 EHRARLGAPGCAAITLHGRSREQRYTKLADWGYIGEC----------------------A 540
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577
+LI H TR+ A+ D + A GNGD S+ DY ++ ++ + V
Sbjct: 541 ALIRAHNATRDALADTAAEPDARTQAA--AGRLFFLGNGDCYSHVDYHRNIDEA-RVDTV 597
Query: 578 MIGRGALIKPWIFQEIKEKKLFDIYA 603
MIGRGAL+KPW+F+EI++ + D A
Sbjct: 598 MIGRGALVKPWLFEEIEKGQYLDKSA 623
>gi|85116240|ref|XP_965022.1| hypothetical protein NCU02619 [Neurospora crassa OR74A]
gi|74629110|sp|Q7SG01.1|DUS3_NEUCR RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|28926822|gb|EAA35786.1| hypothetical protein NCU02619 [Neurospora crassa OR74A]
gi|38567151|emb|CAE76445.1| conserved hypothetical protein [Neurospora crassa]
Length = 737
Score = 192 bits (488), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 182/639 (28%), Positives = 262/639 (41%), Gaps = 134/639 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK+E++V +V V + D + +G A K KK + KGQNK R
Sbjct: 74 GIAPIKKEYLVVPPSQVAKTAEVVDDDAAE-GRTAPGAEGAAGKDGKKKRP--KGQNKER 130
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCYVF 119
F C + CK+GE+C +HD ++K +P+ +C V+
Sbjct: 131 EFGIFADAQRLCNSVAWTPEFSPRHCKHGERCNALHDIRKYLKEGRRPDLNVFGGKCPVW 190
Query: 120 LQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTVNMLA-NEVRQDLRKH 177
HG C G C F SH+ E + KE VL E + + ++ E D R
Sbjct: 191 ETHGKCSSGWRCLFVESHMKEIEHEDGRKELVLTEDPTKIKPEAAPLVPPEEESMDARAG 250
Query: 178 TYNF-EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
YN + K+ K ++E D +DS++ + DDV K
Sbjct: 251 VYNVVAPAVKLALSRKKIQHEKSDQYLKWMAKDSELARIHYHKQK-DDDDVAKDYAAQYV 309
Query: 237 GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
P L K SEK++I + + L+PLTT GNLPFRRLC + GA+IT SEMA+
Sbjct: 310 EPPL-------KPSEKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLP 362
Query: 296 LLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLTKCTQL 334
LL+ +W L++ HESE DL FGVQ+ + P++ K +
Sbjct: 363 LLQGQKADWTLMRAHESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAET 422
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPI+ +YK G+GS LL + + G N
Sbjct: 423 LARYLPHLRVIDLNCGCPIDMVYKSGAGSALLDAPSKLERMIRGMN-------------- 468
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
T EV P+T K R G+ +DN
Sbjct: 469 -------------------------------------TVSGEV---PVTAKIRMGV-RDN 487
Query: 454 NIIHNFM--------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
++ + P R G + +TLHGRTR+QRYTK ADW YI +CA L
Sbjct: 488 HLTAQKLVERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSF 547
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
N + R+ + GR GNGD S+
Sbjct: 548 NEKADSLQDTIREADERSLPNGGRMY------------------------FVGNGDCYSH 583
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
DY + + + VM+GRGA+IKPWIF+EI + D
Sbjct: 584 VDYFNHVDNA-KVDSVMVGRGAIIKPWIFEEISAGQYLD 621
>gi|397615410|gb|EJK63418.1| hypothetical protein THAOC_15928 [Thalassiosira oceanica]
Length = 523
Score = 192 bits (488), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 138/477 (28%), Positives = 220/477 (46%), Gaps = 99/477 (20%)
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
KN + +GQNK R E+ C + + C++ HD ++ ++P D
Sbjct: 99 KNGKKRRGQNKKRPRDSKISNEEKLCLAVVKGLACPFSSSSKGCRYNHDLKAYLSTRPAD 158
Query: 112 ISE----------QCYVFLQHGYCPMGIACRFGSSHLD-ENGGNIVKEDVLKEWKNTVGN 160
+ + +C + GYC G+ CR G H++ G N+ + + G
Sbjct: 159 LCDGPDGVTWLKGECPFWKTRGYCDFGVMCRLGQCHINMSTGQNLCRT------TDASGV 212
Query: 161 KTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE--GREE 218
+ + + +N + + + S E K + + +K S+V+ R+
Sbjct: 213 EVIGLPSNLI------DSASGSMSTTGTAEKKPAASGDKLEPSWTFAHQSEVLNTISRDT 266
Query: 219 INTPNTD----------DVIKVQEETKSGPVL----DTDIIKIKNSEKKKIDWQGKLYLS 264
I D +V K +E K+G V+ DT + E+K ID+ K+Y++
Sbjct: 267 ITLLRKDQYPFVCKRHFEVKKEKEAQKNGLVIPKIEDTSKPTLPLKERKLIDFSNKVYIA 326
Query: 265 PLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNN 324
PLTTVGNLP+RR+ K +GADITC EMA+A +LL+ EWAL+KRH SED+FGVQ+ +
Sbjct: 327 PLTTVGNLPYRRIMKNFGADITCGEMALADQLLQGRQSEWALLKRHASEDVFGVQIASGH 386
Query: 325 PYVLTKCTQLL--EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
P T+ ++L EE + VDFVD+NLGCP++ + +G+G+ L+ R +
Sbjct: 387 PDQYTRICEVLANEESLDVDFVDMNLGCPLDLVCDKGAGAKLMLRDSKL----------- 435
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+GS G+L +V+ C P+T
Sbjct: 436 ------------------------------KGSVKGML-------NVLNC-------PVT 451
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDW---GASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+K RTG ++ I H + + W G LHGR+R QRY++ ADWDYI + A+
Sbjct: 452 IKMRTGWSSEHPIAHELQRRVQGWQLDGIGAFMLHGRSRLQRYSRNADWDYIVQVAK 508
>gi|432102013|gb|ELK29833.1| tRNA-dihydrouridine synthase 3-like protein [Myotis davidii]
Length = 593
Score = 192 bits (487), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 157/281 (55%), Gaps = 36/281 (12%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNKAR P+ K + CP + + + C +G++C+F+HD + ++++KP D+
Sbjct: 108 RGQNKARPHIKPSHYDK--NRLCPSIVQESAAK-CFFGDRCRFLHDVSCYLETKPADLGP 164
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F +G CP G+ CRF +HL G N+V+E+V+ N L ++Q L
Sbjct: 165 RCVLFENYGRCPYGVTCRFAGAHLGPEGQNLVREEVVP------APPVRNGLDKALQQQL 218
Query: 175 RKHTYNFEKSEKICKE---------------NKASKNENKDTDDCCKNQDSKVIEGREEI 219
RK FE++E+ + + E+ D C Q + +
Sbjct: 219 RKRKIRFERAEQALHQLGKGHLPSPTPSATVPEVPGAESAPGQDNCDTQQAPLAPC---T 275
Query: 220 NTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCK 279
TP + + GP+ D DI+++++ EK+++D GKLYL+PLTT GNLPFRR+CK
Sbjct: 276 GTPPSSPM------QTCGPLTDEDIVRLRSCEKRQLDISGKLYLAPLTTCGNLPFRRICK 329
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++GAD+TC EMAV T LL+ EWAL+KRH ED+FGVQ+
Sbjct: 330 RYGADVTCGEMAVCTNLLQGQTSEWALLKRHPCEDIFGVQV 370
Score = 138 bits (348), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 78/99 (78%), Gaps = 2/99 (2%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +PK R+WGA+L+TLHGR+REQRYTK ADW YI++C SP PL+GNGDILSYE
Sbjct: 388 NLAHRLLPKLREWGAALVTLHGRSREQRYTKLADWQYIKQCVAAASPMPLFGNGDILSYE 447
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 448 DANCAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 484
>gi|258563178|ref|XP_002582334.1| potential tRNA dihydrouridine synthase [Uncinocarpus reesii 1704]
gi|237907841|gb|EEP82242.1| potential tRNA dihydrouridine synthase [Uncinocarpus reesii 1704]
Length = 726
Score = 191 bits (486), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 187/659 (28%), Positives = 275/659 (41%), Gaps = 159/659 (24%)
Query: 5 GVAKIKQEFIV----EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
G+A IK E+++ +D +E + L E A ++ K ++ KGQ
Sbjct: 57 GMAPIKAEYLMSRGGQDVATTFDARDDDEAEAAPLRE-------RADERGAKQRKKQKGQ 109
Query: 61 NKARGPTF-VTKPEDCYCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDISE-- 114
N R F ++ E C + S + C++GE C+F HD ++K K ED++
Sbjct: 110 NTGR--RFGQSRDEKGLCQSVSHSPEFSPKACQFGEGCRFEHDLRKYLKEYKREDLTTFD 167
Query: 115 -QCYVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKE-----------WKNTVGNK 161
C V+ HG C G CRF SH+ E G+ KE VL E + V
Sbjct: 168 GVCPVWNAHGVCFSGWKCRFVGSHMMERETGDGKKELVLVEDEERKKSAKPLVEGGVEAG 227
Query: 162 TVNMLANEVRQDLRKHTYNFEKSEKICK--ENKASKNENKDTDDCCKNQDSKVIEGREEI 219
N + E + L K + KS+ + + + E + + Q EG E
Sbjct: 228 VFNSITTEHKTQLMKKKFKISKSDAYVPWLDETSRQLEMRMHGRKFEGQGD---EGNAET 284
Query: 220 NTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLC 278
N + + + K P L SEK+++ + + L+PLTT GN+PFRRLC
Sbjct: 285 NGGAENVAEDNRAQYKEPPFLP--------SEKRRLYFGPETPVLAPLTTQGNMPFRRLC 336
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FG 317
+ GA T SEMA++ L++ EWAL+K HESE L FG
Sbjct: 337 AELGAQFTYSEMAMSLPLIQGHKSEWALVKAHESEVLPPTINPNQAVVKDYDRTRDLKFG 396
Query: 318 VQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLC 376
VQ+ N P+ K T+++ + VD+N GCPI+ +Y+ G+GS LL+
Sbjct: 397 VQISANKPWQALKATEVITTLCPHIRVVDLNCGCPIDLVYRDGAGSALLE---------- 446
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
+P L K IL+ + EV
Sbjct: 447 --HPSKLEK---------------------------------------ILRGMNAVSGEV 465
Query: 437 SSLPITVKTRTGIHKDNNIIHNFM-------PKFRDW-----GASLITLHGRTREQRYTK 484
P++ K R G + P+FR G + +TLHGR+R+QRYT+
Sbjct: 466 ---PVSAKIRMGTKDKSPTALKLAERLILGGPEFRKIGQGPPGVAALTLHGRSRQQRYTR 522
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
QADW YI +CA L R L+ RT E T Q + E+
Sbjct: 523 QADWGYISECAALIKR---------------------LNERTDEVTDTVQ---EPDERHQ 558
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY +++S + VMI RGAL+KPWIF+EI+ + D A
Sbjct: 559 APGRKVFFLGNGDCYSHEDYYRDIRES-GVDTVMIARGALMKPWIFEEIQAGQYLDKSA 616
>gi|71422193|ref|XP_812059.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70876795|gb|EAN90208.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 529
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 179/385 (46%), Gaps = 114/385 (29%)
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSE--------KKKIDWQGKLYLSPLTTVGNLPFRRLC 278
V++ EE + ++++ + K SE +++ ++ KL L+PLTTVGNLPFRR+C
Sbjct: 130 VLQKNEEDERDATRNSELARTKQSEENVRENAARRRALFKNKLVLAPLTTVGNLPFRRVC 189
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K +GADIT S M++ L + EW+L++RHESED+FG+Q+ + P + +E
Sbjct: 190 KSYGADITVSSMSLVHNLNRLQKGEWSLLRRHESEDVFGLQIAVSQPQSAQTWAKAIEAS 249
Query: 339 -MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+ DF+D+N GCP++ I G G GL +R + + D
Sbjct: 250 GYSYDFIDINCGCPVQMIMSAGCGCGLWER-----------------------RDNRLRD 286
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI-I 456
V S L+Q S P+++K R G +++ +
Sbjct: 287 IV-----------------SSLVQH--------------QSKPVSIKCRIGAGANSSASL 315
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H + + WGA +T+HGR R QRYTK A+W+YI+ CA S
Sbjct: 316 HEKIGDYEGWGADAVTIHGRFRAQRYTKLANWEYIDSCAARTS----------------- 358
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P+ GNGDI SYED + ++ P +S
Sbjct: 359 ---------------------------------LPVIGNGDIFSYEDIIDHRERYPHVSS 385
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
MIGRGALIKPWIF+EIK+++ DI
Sbjct: 386 YMIGRGALIKPWIFEEIKQEQPRDI 410
>gi|302924043|ref|XP_003053802.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734743|gb|EEU48089.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 770
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 164/555 (29%), Positives = 238/555 (42%), Gaps = 131/555 (23%)
Query: 89 CKYGEKCKFVHDKNVFM----KSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
CK+G++CK HD ++ + E +C VF HG+CP G CRF SH+ E
Sbjct: 191 CKFGDRCKLSHDLRKYLEDGRRGDVETFEGKCPVFTAHGHCPSGWKCRFVKSHMKE---- 246
Query: 145 IVKEDVLKEWK--NTVGNKTVNMLA-NEVRQDLRKHTYNFEKSEKICKENKASKNENK-D 200
I ED KE NT + N NE ++ R N +K N+ + K D
Sbjct: 247 IEHEDGRKELVLINTSADSGQNGEPQNEESEEQRPDISNIVSMDKKIDLNRKRTDFTKAD 306
Query: 201 TDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGK 260
N+++K+ E +D+ I+ P K SEK+++ + +
Sbjct: 307 QYITWLNKEAKLSEEFMNRRKNQSDEGIEDLRARYVDPPF-------KPSEKRRLYFGPE 359
Query: 261 L-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE------ 313
L+PLTT GNLPFRRLC + GA +T SEMA+ L++ + +W L+K H+SE
Sbjct: 360 TPTLAPLTTQGNLPFRRLCVELGAQLTYSEMAIGMPLIQGTKADWTLLKVHDSELTPPKM 419
Query: 314 ---------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIY 356
DL FG Q+ GNN +V++K +L + +D+N GCPI+ ++
Sbjct: 420 NTGSVPIFEDYDHSRDLKFGAQISGNNHWVVSKAADVLNRYCPHLRLIDLNCGCPIDMVF 479
Query: 357 KQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG 416
K G GS LL+ G
Sbjct: 480 KSGGGSALLE---------------------------------------------NHGKM 494
Query: 417 SGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF----RDW------ 466
+++ N + I PIT K RTGI + + + R+
Sbjct: 495 ERMIRGMNAMSGEI---------PITAKIRTGIRNNRPTATQLIGRLAFGAREHRERLGA 545
Query: 467 -GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
G + +TLHGR+REQRYTK+ADW YI +CA L N K +D SL
Sbjct: 546 PGCAALTLHGRSREQRYTKKADWGYIGECAALIKSYN--------KQKD---SLTDTAAE 594
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
E D GNGD S+ +Y E+++K+ + VMIGRGALI
Sbjct: 595 PDESSLPNAKDGRMY-----------FLGNGDCYSHTEYYENIEKA-RVDTVMIGRGALI 642
Query: 586 KPWIFQEIKEKKLFD 600
KPWIF+EI++ + D
Sbjct: 643 KPWIFEEIEKGQYLD 657
>gi|452844367|gb|EME46301.1| hypothetical protein DOTSEDRAFT_51822 [Dothistroma septosporum
NZE10]
Length = 755
Score = 190 bits (483), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 197/680 (28%), Positives = 282/680 (41%), Gaps = 203/680 (29%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK+E++V+ S + D E + D G + + ++ GQNK+R
Sbjct: 86 GVAPIKKEYLVQVGKGTWS---EAQYDDDAAEGRDSRDSGQGQAAGRGGQKTKGGQNKSR 142
Query: 65 GPTFVTKP---EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE----QC 116
F + E C + TC +G KCK HD ++K K ED+ C
Sbjct: 143 --QFGSSRDAIELCRSRQTANEFAPITCSFGAKCKHAHDIRKYLKDGKREDLQTFNKGTC 200
Query: 117 YVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKE----------------------- 153
VF G C G CRF SH E I +ED KE
Sbjct: 201 PVFELKGKCKAGWRCRFAGSHSQE----IAREDGRKELIQLIRRDDGDVKGHDQAQQQEE 256
Query: 154 -WKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK--ENKASKNENK--DTDDCCKNQ 208
W++ N VN + + + L+K + KSEK + E + K++ K ++D N
Sbjct: 257 DWESA--NGVVNTVEYKNKITLKKKKWPAPKSEKYLRWLEKYSFKDDGKKLESDGNATNG 314
Query: 209 DSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLT 267
DS+ D+ E+ + SEK++I + + L+PLT
Sbjct: 315 DSE-----------KADNSANYVEQPP------------RPSEKRRIYYGPETPVLAPLT 351
Query: 268 TVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-------------- 313
T GNLPFRRLC + GA IT SEMA+ LL+ QEWAL+K HESE
Sbjct: 352 TQGNLPFRRLCVELGAQITWSEMAMGLPLLQGENQEWALMKAHESELAPPAFYPKNIVHD 411
Query: 314 -----DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQ 366
D+ FG Q+ GN P++ K T+ L + + +D+N GCPI+ +++QG+GS LL
Sbjct: 412 YDNSKDIRFGAQIAGNKPWLAVKTTETLTSLLPNLRAIDLNCGCPIDLVFRQGAGSALL- 470
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+ P L K IL
Sbjct: 471 -----------DAPGKLEK---------------------------------------IL 480
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKD-----------------NNIIHNFMPKFRDWGAS 469
+ + T EV PITVK R G KD ++ N P G +
Sbjct: 481 RGMNTVSGEV---PITVKIRMGT-KDKAPNADKLCQRLIMGGLDSQDANLGPA----GVA 532
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQL-----CSRDNNIIHNFMPKFRDWGASLITLHG 524
ITLHGR+R+QRYT+ ADW+YI +CA L R + + P RD A+ +
Sbjct: 533 AITLHGRSRQQRYTRSADWEYIAECASLVEKLKAERADATDTSRQPDARDLPATNDGM-- 590
Query: 525 RTREQRYTKQADWDYIEKCAQLCSPAPLY-GNGDILSYEDYTESLKKSPSISGVMIGRGA 583
P + GNGDILS+ D+ ++++ + MIGRGA
Sbjct: 591 --------------------------PYFCGNGDILSHVDWNTHMEQA-GVDSAMIGRGA 623
Query: 584 LIKPWIFQEIKEKKLFDIYA 603
L+KPWIF+EI+ + D A
Sbjct: 624 LVKPWIFEEIQSNQYLDKSA 643
>gi|365759250|gb|EHN01050.1| Dus3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 524
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 147/492 (29%), Positives = 230/492 (46%), Gaps = 102/492 (20%)
Query: 127 MGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANEVRQDLRKHTYNFEKS 184
MG CRF SSHL++ ++ + T+ + N ++ E + DL K + F KS
Sbjct: 1 MGFKCRFLSSHLNKEESTLISTKEVDPETQTIWSVKGETNHISPETKLDLIKRRFPFTKS 60
Query: 185 EKICKENKASKNENKDTDDCCKNQDS------KVIEGREEINTPNTDDVIKVQEETKSGP 238
++ + + + E +D+ + DS K E +E P V + +E
Sbjct: 61 NEVLEIIDSFQQECRDSMKAEEEGDSTPKGKGKDQEFDKESGQPVAPQVEQRIKELSEHR 120
Query: 239 VLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
+ ++ +K K++ EKK +D K +SPLTTVGNLP+RRL +K GAD+T SEMA+
Sbjct: 121 IRQREVYLKYKDTRYFAQEKKPLDLHRKKIISPLTTVGNLPYRRLMRKLGADVTYSEMAL 180
Query: 293 ATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQMAVDFVDVNLGC 350
A L++ + EWAL K H+SE FGVQ+ C L + + +++N GC
Sbjct: 181 AIPLIQGTNSEWALPKAHKSEVPGFGVQVACSKAWQAAKAAEALTDSVSDISEINLNSGC 240
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI+ +Y+QGSGS LL +NP + +C
Sbjct: 241 PIDLLYRQGSGSALL------------DNPARMIRC------------------------ 264
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKF-RDWGA 468
+ MN VS +PITVK RTG + + I + + +
Sbjct: 265 -------------------LNAMNYVSKEIPITVKIRTGTKEGHPIAEGLVKRLVNETDV 305
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+ ITLHGR+R+QRYTK ADW+Y+ + A + + + F++ T G +E
Sbjct: 306 AAITLHGRSRQQRYTKSADWEYVSQVA-------DTLRSAEADFKE------TEQG--KE 350
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
R +K+ GNGD+ ++ED+ L+ + +I VM+ RGALIKPW
Sbjct: 351 SRDSKKR--------------IQFVGNGDVNNFEDWYRYLEGNTNIDSVMVARGALIKPW 396
Query: 589 IFQEIKEKKLFD 600
IF+E+ ++ D
Sbjct: 397 IFEEVDSQQYLD 408
>gi|336464800|gb|EGO53040.1| hypothetical protein NEUTE1DRAFT_126438 [Neurospora tetrasperma
FGSC 2508]
Length = 737
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 180/633 (28%), Positives = 261/633 (41%), Gaps = 122/633 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK+E++V +V V + D E D A K+ KGQNK R
Sbjct: 74 GIAPIKKEYLVVPPSQVAKTAEVVDDDA---AEGRTAPDAEAATGKDGKKKRPKGQNKER 130
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCYVF 119
F C + CK+GE+C +HD ++K +P+ +C V+
Sbjct: 131 EFGIFADAQRLCNSVAWTPEFSPRHCKHGERCNALHDIRKYLKEGRRPDLNVFGGKCPVW 190
Query: 120 LQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTVNMLA-NEVRQDLRKH 177
HG C G C F SH+ E + KE VL E + + +++ E D R
Sbjct: 191 ETHGKCSSGWRCLFVESHMKEIEHEDGRKELVLTEDLTKIKPEAASLVPPEEESMDARAG 250
Query: 178 TYNF-EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
YN + K+ K ++E D +DS++ + DDV K
Sbjct: 251 VYNVVAPAVKLALSRKKIQHEKSDQYLKWMAKDSELARIHYHKQK-DDDDVAKDYAAQYV 309
Query: 237 GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
P L K SEK++I + + L+PLTT GNLPFRRLC + GA+IT SEMA+
Sbjct: 310 EPPL-------KPSEKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLP 362
Query: 296 LLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLTKCTQL 334
LL+ +W L++ HESE DL FGVQ+ + P++ K +
Sbjct: 363 LLQGQKADWTLMRAHESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAET 422
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPI+ +YK G+GS LL + P L E+
Sbjct: 423 LARYLPHLRVIDLNCGCPIDMVYKSGAGSALL------------DAPSKL--------ER 462
Query: 394 MVVDFVDVNLGCPIEFIYKQG------SGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447
M+ V+ P+ + G + L++R + I VS P
Sbjct: 463 MIRGMNTVSGDVPVTAKIRMGVRDNHQTAQKLVERLALGAPDIRA---VSGAP------- 512
Query: 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
G + +TLHGRTR+QRYTK ADW YI +CA L N +
Sbjct: 513 -------------------GCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSFNEKADS 553
Query: 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567
R+ + GR GNGD S+ DY
Sbjct: 554 LQDTIREADERSLPNGGRMY------------------------FVGNGDCYSHVDYFNH 589
Query: 568 LKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ + + VM+GRGA+IKPWIF+EI + D
Sbjct: 590 VDNA-KVDSVMVGRGAIIKPWIFEEISAGQYLD 621
>gi|255941804|ref|XP_002561671.1| Pc16g13720 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586294|emb|CAP94042.1| Pc16g13720 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 729
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 157/554 (28%), Positives = 240/554 (43%), Gaps = 116/554 (20%)
Query: 89 CKYGEKCKFVHDKNVFMKS-KPEDISEQ---CYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C+YGEKC+F HD V++K K ED++ C V+ G C G CR SH E
Sbjct: 143 CQYGEKCRFEHDLRVYLKEHKREDLTTMNNICPVYEALGKCYSGWKCRMVGSHSTERETE 202
Query: 145 ------IVKEDV--LKEWKNTVGNKT----VNMLANEVRQDLRKHTYNFEKSEKICKENK 192
I+ ED +++ + + N T VN+++NE + L T E++ +
Sbjct: 203 DGKKELILLEDAERMEKARPRIANATPDGIVNIISNEDKISL---TRKREETPRADAYTT 259
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEK 252
+ + + + + + +G E+ P+ I +QE L+ + SEK
Sbjct: 260 WTIQVSAELEKAIHQRSTTREKG--ELVEPDEQAKIDMQENRAQ--FLEPPFMP---SEK 312
Query: 253 KKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
++I + + L+PLTT GN+PFRRLC GA T SEMA++ L++ S EW L+K HE
Sbjct: 313 RRIYFGPETPVLAPLTTQGNMPFRRLCADLGAQFTYSEMAMSMPLIQGSKSEWTLLKAHE 372
Query: 312 SEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLG 349
SE FG Q+ N P+ K T++L + + +D+N G
Sbjct: 373 SEMAPPTVIPGDNIVQGYDNSKDCRFGAQIAANKPWQALKATEVLSKFTPNLRVIDLNCG 432
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPIE +++ G+GS LL + E+M+ V+ PI
Sbjct: 433 CPIELVFRDGAGSALLDHHSKL--------------------EKMIRGMNTVSQEIPITV 472
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+ G+ +++ ++ E S L + GA+
Sbjct: 473 KIRMGTKDNQPTAQKLVERMVLGGYESSVLDLGPP----------------------GAA 510
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYT+QADW YI CA L R N R+ A + G+T
Sbjct: 511 AITLHGRSRQQRYTRQADWGYISDCAALIKRLNKKQDALSDTIREPDARHMPNGGKTY-- 568
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD S+ DY + + + + VM+ RGALIKPWI
Sbjct: 569 ----------------------FIGNGDCYSHVDYDDHVNNA-GVDSVMVARGALIKPWI 605
Query: 590 FQEIKEKKLFDIYA 603
F+EI+ + D A
Sbjct: 606 FEEIQTGQYLDKSA 619
>gi|327295134|ref|XP_003232262.1| tRNA-dihydrouridine synthase [Trichophyton rubrum CBS 118892]
gi|326465434|gb|EGD90887.1| tRNA-dihydrouridine synthase [Trichophyton rubrum CBS 118892]
Length = 755
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 185/663 (27%), Positives = 276/663 (41%), Gaps = 154/663 (23%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEV----EDDGTAKKKFKKNKQVLKGQ 60
G+A IK E+I+ K S N R + E + DG K+ KK ++ KG+
Sbjct: 66 GLAPIKAEYIIT-FPKDGSDAPANNNSGRDDDAAEAAGYNDRDGEGKQG-KKRREKQKGK 123
Query: 61 NKARG-----------PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-K 108
N R T PE + P + C+YG+ CKF H+ ++K K
Sbjct: 124 NTNRRFQRSHDEKGLCGTITHNPE--FSP--------KPCQYGDNCKFEHNLRKYLKEHK 173
Query: 109 PEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWK---- 155
D++ C V+ G C G CRF SH+ E I+ ED K+ K
Sbjct: 174 KADLTTFGGICPVWDAFGVCSAGWRCRFVGSHMAEREHEDGRKELILVEDEEKKKKALSS 233
Query: 156 -------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKASKNENKDTDDC 204
N VN+++ E +Q + + Y K++ I +K + +
Sbjct: 234 SATTSSINATELGVVNLVSTENKQLMTRKKYLTPKADAFNDWITVTSKELEERFHGRNFE 293
Query: 205 CKNQDSKVIEGREEINTPNTDDVIKVQEETKS----GPVLDTDIIKIKNSEKKKIDWQGK 260
+ D K G+EE N + EE ++ P L SEK+++ + +
Sbjct: 294 EEEADGKETNGKEETNGNGETKAKESSEENRARYTEPPFLP--------SEKRRLYFGPE 345
Query: 261 L-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL---- 315
L+PLTT GNLPFRRLC + GA T SEMA++ L++ + EWAL+K HESE L
Sbjct: 346 TPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPLMQGTKGEWALMKAHESEILPPTI 405
Query: 316 -----------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYK 357
FG Q+ GN P+ K T++L + VD+N GCPI+ +Y+
Sbjct: 406 SPKQPVVKGYDHSRDLKFGAQIAGNRPWQALKATEILTALCPHLRVVDLNCGCPIDLVYR 465
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
G+GS LL+ + L G N V+ PI + G
Sbjct: 466 DGAGSALLEHPSKLEKILRGMNA--------------------VSGEVPISAKIRMG--- 502
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
T N ++L + + G ++ N + G +TLHGR+
Sbjct: 503 -------------TKDNYPTALKLAERLVIGGYESNELGQGPA------GIGALTLHGRS 543
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRYT++ADW+YI +C+ L R N R+ L+ G+
Sbjct: 544 RQQRYTREADWEYISECSALVKRLNTKRDEVSDTVREPDERLLPPGGKVY---------- 593
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
GNGD S+ DY ++ KS + VM+ RGALIKPWIF+EI+ +
Sbjct: 594 --------------FIGNGDCYSHADYNTAIDKS-GVDSVMVARGALIKPWIFEEIQAGQ 638
Query: 598 LFD 600
D
Sbjct: 639 YLD 641
>gi|344234736|gb|EGV66604.1| hypothetical protein CANTEDRAFT_100359 [Candida tenuis ATCC 10573]
Length = 613
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 145/536 (27%), Positives = 234/536 (43%), Gaps = 138/536 (25%)
Query: 77 CPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
C L D + C++G E C+ H+ F+ SK D+ C VF GYCP G+ CR+
Sbjct: 90 CTSLVDPDNAKECRFGAENCRSSHNIEEFLASKEPDVEGICPVFDAIGYCPAGLKCRWLG 149
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEK-ICKENKAS 194
SH D+ ++K+ L + + + +N + N+ + L+K Y F+ + K I +
Sbjct: 150 SHYDKETNKLLKD--LAKIEVNQEPRELNRITNDAKIALQKKKYEFKTATKMISYLDSQV 207
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
KNE KN + K E + P + +EKK+
Sbjct: 208 KNEA-----YMKNLEEKKDNQAEFVEVP------------------------FRVAEKKR 238
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE- 313
++++ +SPLTTVGNLP+RRL K GAD+T EMA+ LL+ + EWAL K H+SE
Sbjct: 239 LNFKNAKIVSPLTTVGNLPYRRLMKTLGADVTYGEMALTVPLLQGTNAEWALPKAHKSEY 298
Query: 314 DLFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN--- 369
FGVQ + K +++ E V +++N GCPI+ +Y+QG GS L+++ +
Sbjct: 299 PGFGVQFAAGKHWSAAKAAEIIYRETPNVSELNLNCGCPIDLLYRQGQGSALMEQPSKLM 358
Query: 370 --LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
L G+ C + V K +G N +
Sbjct: 359 RILKGMNYCSGDIPVTVKIR-----------------------------TGTKDNKNTAK 389
Query: 428 SVITCM---NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
S++ + NEV+++ + HGR+R+QRY++
Sbjct: 390 SLVGRLLEENEVAAITL--------------------------------HGRSRQQRYSR 417
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
+ADW Y+ + AQ+ +DW R++ +D
Sbjct: 418 EADWGYVGEVAQVV--------------QDWN---------NRKEENKDMSD-------- 446
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD+ ++ED+ + +P I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 447 --TQATQFLGNGDVYTFEDWY-AATNTPGIDSVMVARGALIKPWIFEEVEAQQYLD 499
>gi|67517075|ref|XP_658422.1| hypothetical protein AN0818.2 [Aspergillus nidulans FGSC A4]
gi|74598677|sp|Q5BF62.1|DUS3_EMENI RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|40746492|gb|EAA65648.1| hypothetical protein AN0818.2 [Aspergillus nidulans FGSC A4]
gi|259488899|tpe|CBF88723.1| TPA: tRNA-dihydrouridine synthase 3 (EC 1.-.-.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5BF62] [Aspergillus
nidulans FGSC A4]
Length = 714
Score = 189 bits (480), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 177/636 (27%), Positives = 270/636 (42%), Gaps = 120/636 (18%)
Query: 5 GVAKIKQEFIV----EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
GVA IK EF++ + V S + E K E E + KN+ + Q
Sbjct: 52 GVAPIKAEFLIPKPKQGQAAVSSTDDAAEAAAYKDREDEKKGKKKKTTGQNKNRTFGRSQ 111
Query: 61 N-KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
+ K + V PE + P C +G+KC+F HD ++K K ED++
Sbjct: 112 DSKGLCASRVYSPE--FSP--------AECPFGDKCRFEHDLRTYLKEHKREDLNTFNGV 161
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW---KNTVGNKTVNMLANEVRQ 172
C V+ G C G CRF SH E V ED KE ++ K + +
Sbjct: 162 CPVWSARGKCDAGWKCRFVGSHSIER----VTEDGRKELVLVEDEERRKKAQPVFPSAAE 217
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTD--DCCKNQDSKVIEGREEINTPNTDDVIKV 230
D +T + + K + + + +D D + K G ++ N D +
Sbjct: 218 DGTVNTTSPADKIALAKRQRPTPRADAYSDWLDLTSKELEKYFHGGQQ-NKDAHPDTAQD 276
Query: 231 QEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSE 289
+EE + T+ SEK+++ + + L+PLTT GNLPFRRLC + GA +T SE
Sbjct: 277 KEEKEENRATYTEA-PFMPSEKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSE 335
Query: 290 MAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYVL 328
MA++ L++ EWAL++ HE+E L FG Q+ GN +
Sbjct: 336 MALSMPLIQGHKPEWALMRAHETEALPPTVSARASVVQDYDNSKDMKFGAQIAGNKYRWV 395
Query: 329 TKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCT 387
K T++L + +D+N GCPI+ +Y++GSGS LL + L G N
Sbjct: 396 MKATEVLSSLTPNLRVIDLNCGCPIDLLYREGSGSALLDAPSKLEKMLRGMN-------- 447
Query: 388 QLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447
+ EQ+ PI + G+ +++ +I +E S L
Sbjct: 448 -AVSEQI-----------PITVKIRTGTRDNTPNAQKLVERLILGGHEASML-------- 487
Query: 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
N P G + ITLHGR+R+QRYT++A+W+YI + A L R N
Sbjct: 488 ----------NCGPS----GVAAITLHGRSRQQRYTREANWEYISETAALIKRLNEKSDE 533
Query: 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567
R+ + G+T W GNGD S+ DY +
Sbjct: 534 VTDTIREPEERMRPNGGKT----------W--------------FLGNGDCYSHVDYEDH 569
Query: 568 LKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+K + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 570 IKNA-KVDSVMVGRGALIKPWLFEEIQAGQYLDKSA 604
>gi|115492659|ref|XP_001210957.1| hypothetical protein ATEG_00871 [Aspergillus terreus NIH2624]
gi|121742521|sp|Q0CZL3.1|DUS3_ASPTN RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|114197817|gb|EAU39517.1| hypothetical protein ATEG_00871 [Aspergillus terreus NIH2624]
Length = 719
Score = 188 bits (478), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 273/639 (42%), Gaps = 128/639 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK E++V+ + +S N D + E +D KK K ++GQN R
Sbjct: 59 GVAPIKAEYLVDINAIPVSAPEENTDDAAEAAHHEEREDD------KKKKPKIRGQNTNR 112
Query: 65 GPTFVT-KPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF + E CP C++G+KC+F HD ++K K ED++ C
Sbjct: 113 --TFGRYQDEKGLCPSRVFAPEFSPGECRFGDKCRFEHDLRTYLKEHKREDLTTFGGVCP 170
Query: 118 VFLQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVL-------KEWKNTVGNKTVNMLANE 169
V+ G C G CRF SH+ E + + KE VL K+ V + LAN
Sbjct: 171 VWDARGKCYAGWKCRFVGSHMTERDTPDGRKELVLVEDEERKKKSPRLVPYASEEGLANT 230
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ D R S K K +A + D Q K + GR + N V++
Sbjct: 231 ISVDDRNAL-----SRKKIKTPRA--DAYSSWLDKTSKQLEKTLHGRRQ----NDGGVVE 279
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
+E + + SEK+++ + + L+PLTT GNLPFRRLC + GA S
Sbjct: 280 FTKEEREEQRANYTEPPFLPSEKRRLYFGPETPTLAPLTTQGNLPFRRLCVELGAQFVYS 339
Query: 289 EMAVATELLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYV 327
EMA++ L++ + EWAL++ HE+E D+ FG Q+ N P+
Sbjct: 340 EMAMSMPLIQGTKSEWALLRSHETELTPPTISPSDKIVQGYDNSKDMKFGAQIAANKPWQ 399
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 400 ALKATEVLSKFTPNLRVIDLNCGCPIDLLFREGAGSALLEHHSKLEKILRGMN------- 452
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G +++ ++ +E L +
Sbjct: 453 -------------AVSEEIPISVKIRLGVRDNAPNAQKLVERLVLGGHESHLLGLG---- 495
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + ITLHGR+R+QRYTKQADW YI + A L N
Sbjct: 496 ------------------PCGTAAITLHGRSRQQRYTKQADWGYIAETAALIKNLN---- 533
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY--GNGDILSYEDY 564
+R + D Y L + +Y GNGD S++DY
Sbjct: 534 ----------------------KRKDELTDTIYEPDERMLPNGGKVYFLGNGDCFSHQDY 571
Query: 565 TESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + + VMIGRGALIKPW+F+EI+ + D A
Sbjct: 572 DDHINNA-GVDSVMIGRGALIKPWLFEEIQTGQYLDKSA 609
>gi|167519967|ref|XP_001744323.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777409|gb|EDQ91026.1| predicted protein [Monosiga brevicollis MX1]
Length = 353
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 164/355 (46%), Gaps = 111/355 (31%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
++IDW KLYL+PLTTV
Sbjct: 1 RQIDWHNKLYLAPLTTV------------------------------------------- 17
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---AN 369
GN P+ + L +++ D + + S L++R +
Sbjct: 18 ---------GNLPF------RRLCKRLGADVTCSEMAMASSLLQGSSSDWALVRRHESED 62
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
LFG+Q+CGN P +L +C +LL E+ F+D+N GCPI+ I+++G GS LL R L+ +
Sbjct: 63 LFGIQICGNQPDMLARCAELLSEETDASFIDLNCGCPIDQIFQKGCGSALLARRQRLKDI 122
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ M S +PITVK RTG+H D H + + R WG S +T+HGR+R+QRYTK A+WD
Sbjct: 123 VQGMRVCSKIPITVKVRTGVHGDRPTTHKMVHEMRSWGVSALTIHGRSRQQRYTKYANWD 182
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
YI+ C +E L
Sbjct: 183 YIKDC---------------------------------------------VEAAPDL--- 194
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAI 604
P++GNGDILS+E + + S +SGVM+ RGALIKPW+F EIKE++ +DI ++
Sbjct: 195 -PIFGNGDILSWEHAVQH-QASTGVSGVMLARGALIKPWLFTEIKEQRTWDISSM 247
>gi|320038928|gb|EFW20863.1| dihydrouridine synthase [Coccidioides posadasii str. Silveira]
Length = 698
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 168/569 (29%), Positives = 242/569 (42%), Gaps = 144/569 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENG 142
+TC++G+ C+F HD ++K K ED+ C V+ +G C G CRF SH+ E
Sbjct: 138 RTCQFGDNCRFEHDLRKYLKEYKREDLKTFDGMCPVWDAYGLCFSGWKCRFVGSHMTER- 196
Query: 143 GNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE-KICKENKASKNENKDT 201
ED KE + N V +N +E K+ K K D
Sbjct: 197 ---ELEDGRKELVLVEDEERKNAAMPLVEGGAEGGVFNSISTEQKVDLMKKRRKTPKSDA 253
Query: 202 DDCCKNQDSKVIE----GRE-------EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
++ SK +E GR E N D+V + + K P L S
Sbjct: 254 YTTWLDETSKQLEIHNHGRRFADENNVEANDEAGDEVEDRRAQFKEPPFLP--------S 305
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++ +++ EWAL+K
Sbjct: 306 EKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMKA 365
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
H+SE L FGVQ+ N P+ K T+++ + VD+N
Sbjct: 366 HQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDLN 425
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL+ +P L K
Sbjct: 426 CGCPIDLVYRDGAGSALLE------------HPSKLEK---------------------- 451
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN-----IIHNFM-- 460
IL+ + NEV P++ K R G KDN+ +I +
Sbjct: 452 -----------------ILRGMNAVSNEV---PVSAKIRMGT-KDNSPTALKLIERLVLG 490
Query: 461 -PKFRD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
P+F + G + ITLHGR+R+QRYT++ADW YI +CA L R N + R+
Sbjct: 491 GPEFSEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIKRLNERSDDLTDTIRE 550
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
L R GNGD S+EDY ++ +S +
Sbjct: 551 PDDRLQAPGRRVY------------------------FLGNGDCYSHEDYYRAIGES-GV 585
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
VMI RGAL+KPWIF+EI+ + D A
Sbjct: 586 DTVMIARGALMKPWIFEEIQAGQYLDKSA 614
>gi|303317776|ref|XP_003068890.1| hypothetical protein CPC735_009210 [Coccidioides posadasii C735
delta SOWgp]
gi|240108571|gb|EER26745.1| hypothetical protein CPC735_009210 [Coccidioides posadasii C735
delta SOWgp]
Length = 724
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 166/569 (29%), Positives = 246/569 (43%), Gaps = 144/569 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENG 142
+TC++G+ C+F HD ++K K ED+ C V+ +G C G CRF SH+ E
Sbjct: 138 RTCQFGDNCRFEHDLRKYLKEYKREDLKTFDGMCPVWDAYGLCFSGWKCRFVGSHMTERE 197
Query: 143 -GNIVKEDVL---KEWKNTV--------GNKTVNMLANEVRQDLRKHTYNFEKSEKICKE 190
+ KE VL +E KN N ++ E + DL K KS+
Sbjct: 198 LEDGRKELVLVEDEERKNAAMPLVEGGAEGGVFNSISTEQKVDLMKKRRKTPKSDAYTTW 257
Query: 191 NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
+ + + + + D +E +E D+V + + K P L S
Sbjct: 258 LDETSKQLEIHNHGRRFADENNVEANDEAG----DEVEDRRAQFKEPPFLP--------S 305
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++ +++ EWAL+K
Sbjct: 306 EKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMKA 365
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
H+SE L FGVQ+ N P+ K T+++ + VD+N
Sbjct: 366 HQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDLN 425
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL+ +P L K
Sbjct: 426 CGCPIDLVYRDGAGSALLE------------HPSKLEK---------------------- 451
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN-----IIHNFM-- 460
IL+ + NEV P++ K R G KDN+ +I +
Sbjct: 452 -----------------ILRGMNAVSNEV---PVSAKIRMGT-KDNSPTALKLIERLVLG 490
Query: 461 -PKFRD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
P+F + G + ITLHGR+R+QRYT++ADW YI +CA L R N + R+
Sbjct: 491 GPEFSEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIKRLNERSDDLTDTIRE 550
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
L R GNGD S+EDY ++ +S +
Sbjct: 551 PDDRLQAPGRRVY------------------------FLGNGDCYSHEDYYRAIGES-GV 585
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
VMI RGAL+KPWIF+EI+ + D A
Sbjct: 586 DTVMIARGALMKPWIFEEIQAGQYLDKSA 614
>gi|298710301|emb|CBJ31922.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 743
Score = 187 bits (475), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 119/378 (31%), Positives = 178/378 (47%), Gaps = 124/378 (32%)
Query: 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
++K+ +D++GK+Y++PLTTVGNLPFRR+ K GADITC EMA++ LLK + EWAL++R
Sbjct: 346 AQKRTVDFEGKVYIAPLTTVGNLPFRRVMKDQGADITCGEMALSHHLLKGNGSEWALLRR 405
Query: 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
H SED+FGVQ+ G +P +T+ +LLE+ +DFVD+N+GCPI+ + +G G+ L+ R+
Sbjct: 406 HPSEDVFGVQVAGAHPDQMTRVAELLEKNAKMDFVDINMGCPIDLVCDKGMGAALMGRSR 465
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
+ G + S
Sbjct: 466 KLRGIIAG------------------------------------------------MSSQ 477
Query: 430 ITCMNEVSSLPITVKTRTGIHKDN-------NIIHNFMPKFRDWG----ASLITLHGRTR 478
+TC P+TVK R G + + + R G + + +HGR+R
Sbjct: 478 LTC-------PLTVKMRVGWDEKKPNADVVVRTVQREADRCRKRGFPGSVARVMIHGRSR 530
Query: 479 EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538
QRY+K ADWDY+ + A S+D P R
Sbjct: 531 LQRYSKLADWDYVRQVA--VSQD--------PALR------------------------- 555
Query: 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG-------------VMIGRGALI 585
P P+ GNGDILS+ D+ E L+++ + M+ RGALI
Sbjct: 556 ----------PLPVIGNGDILSWRDHEERLEQARELQSQQGEGEGSQWSTCCMLARGALI 605
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPW+ E+KEK+ +DI +
Sbjct: 606 KPWLPTEVKEKRDWDISS 623
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 74 DCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRF 133
D C L D + C YGE+C+F HD +++ KP DI+E C ++ G CP G+ CRF
Sbjct: 69 DTLCQHLSDG---RPCTYGERCRFAHDVKAYLEKKPPDIAETCPIWDARGSCPSGLKCRF 125
Query: 134 GSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNF 181
G +H D +K V + +N L+ +++ LR++ F
Sbjct: 126 GGAHTDL---ETLKPVVREGGPAPSSFNYINDLSRDLQGKLRRNQVPF 170
>gi|396481859|ref|XP_003841340.1| similar to tRNA-dihydrouridine synthase 3 [Leptosphaeria maculans
JN3]
gi|312217914|emb|CBX97861.1| similar to tRNA-dihydrouridine synthase 3 [Leptosphaeria maculans
JN3]
Length = 725
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 169/586 (28%), Positives = 263/586 (44%), Gaps = 129/586 (22%)
Query: 58 KGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE- 114
+GQN +R + K C L + + C +G+KCKF HD +++ + ED++
Sbjct: 117 RGQNTSRNFGSSRDKTPLCSSRALFNEFSAKECPFGQKCKFEHDLRRYLREGRREDLTTM 176
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGN-----K 161
QC VF G+C MG CRF SH +E ++KED E K V +
Sbjct: 177 NGQCPVFEVKGFCHMGWKCRFVGSHSEERTTEDGRKELVLKEDA--ERKAQVADVEEEVG 234
Query: 162 TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINT 221
VN+++ +V+ L + + +S++ + + +K ++ D DSK + +EE+
Sbjct: 235 VVNIVSKDVKFGLSRRKISTPRSDQYIEWIEKNKGLEREVFDSTMG-DSKAL--KEELEA 291
Query: 222 PNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKK 280
+ V P + SEK++I + + L+PLTT GN+P+RRLC
Sbjct: 292 RRAEYV--------EAP--------FRPSEKRRIYYGPETPVLAPLTTQGNMPYRRLCVD 335
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESE--------------------DL-FGVQ 319
G +T SEMA+ L++ EWAL+K HESE D+ FG Q
Sbjct: 336 LGCQVTWSEMAMGMPLIQGERGEWALMKAHESEITPPAFQSKNKVVQGYDNSTDMKFGAQ 395
Query: 320 LCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLL-QRANLFGVQLCG 377
+ N P++ TK ++L + + +D+N GCPI + ++G+GS LL Q A L
Sbjct: 396 IAANKPWLATKTVEVLTDHCPKLRAIDLNCGCPINLVCEKGAGSALLDQEAKL------- 448
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
EQ++ V+ PI + G+ +++ ++ E
Sbjct: 449 --------------EQILRGMNYVSKEVPITVKIRMGTKDNQPTAQKLIKRLVLGGRE-- 492
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+++T G G + ITLHGR+++QRY++ ADW YI +CA L
Sbjct: 493 ----SIETGKGT----------------CGIAAITLHGRSKQQRYSRSADWSYIAECASL 532
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+R + K RD A + TL E Q + + GNGD
Sbjct: 533 ITR--------LKKERD--AQIDTLA----EPDARDQPNGGTVY----------FVGNGD 568
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ DY +L S + VMIGRGALIKPWIF+EI + D A
Sbjct: 569 CYSHTDYYNAL-DSAHVDSVMIGRGALIKPWIFEEITTNQYLDKSA 613
>gi|398412385|ref|XP_003857517.1| hypothetical protein MYCGRDRAFT_65640 [Zymoseptoria tritici IPO323]
gi|339477402|gb|EGP92493.1| hypothetical protein MYCGRDRAFT_65640 [Zymoseptoria tritici IPO323]
Length = 686
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 189/667 (28%), Positives = 271/667 (40%), Gaps = 197/667 (29%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKR-KLEELEVEDDGTA---KKKFKKNKQVLKGQ 60
G+A IK+EF+V+ V TD R + ++ E G A K + ++ GQ
Sbjct: 37 GIAPIKKEFLVD----------VKTTDNRSQYDDDAAEAGGKAEQGKAAGRGGQKTKGGQ 86
Query: 61 NKARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE-- 114
NK+R F + + C + + C + CK HD ++K K ED+S
Sbjct: 87 NKSR--NFGSSRDAISLCRSREAANEFAKTVCPFDPTCKHEHDIRKYLKDGKREDLSTFN 144
Query: 115 -QCYVFLQHGYCPMGIACRFGSSHLDE----------------NGGNIVKEDVL---KEW 154
C +F G C G CRF SH E +G +V+E +W
Sbjct: 145 GMCPIFETKGQCGAGWRCRFAGSHSKERELEDGRKELVQLVKKDGEVVVREGEAVGSNDW 204
Query: 155 K---NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDS 210
K NT G VN++ N+ + LRK Y+ KS+++ K N EN D QD
Sbjct: 205 KDDENTAG--IVNVVDNKDKITLRKKKYDLPKSDQLMKWYNLQYDIENGKAD----KQDD 258
Query: 211 KVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTV 269
+ + + P ++ SEK++I + + L+PLTT
Sbjct: 259 RA----DYVEPP------------------------LRPSEKRRIYYGPETPVLAPLTTQ 290
Query: 270 GNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL-------------- 315
GNLPFRRL + GA IT SEMA+ LL+ EWAL+K HESE
Sbjct: 291 GNLPFRRLAVELGAQITWSEMAMGMPLLQGDKGEWALMKAHESEMAPPAFSPKNVVRDYD 350
Query: 316 ------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
FG Q+ N P++ K ++L + + +D+N GCPI+ + QG+GS LL
Sbjct: 351 NGKDFRFGAQIAANKPWLAMKTAEVLTDLCPRLRAIDLNCGCPIDLVCNQGAGSQLL--- 407
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
G L++ +L+
Sbjct: 408 ----------------------------------------------DAHGKLEK--MLRG 419
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK------FRDWGASLITLHGRTREQRY 482
+ T EV PITVK R GI + G + ITLHGR+R+QRY
Sbjct: 420 MNTVSKEV---PITVKIRMGIRDKQPTAVKLCKRLILGDDLGPAGVAAITLHGRSRQQRY 476
Query: 483 TKQADWDYIEKCAQL-----CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
TK ADW+YI +CA L RD+ P RD AS +
Sbjct: 477 TKDADWEYIAECASLVKNLRAERDDVTDTTREPDARDLPASNDGM--------------- 521
Query: 538 DYIEKCAQLCSPAPLY-GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
P + GNGD+LS+ DY ++ + + MIGRGAL+KPW+F+EI
Sbjct: 522 -------------PYFCGNGDVLSHVDYNNHMEHA-GVDSCMIGRGALVKPWLFEEISSN 567
Query: 597 KLFDIYA 603
+ D A
Sbjct: 568 QYLDKSA 574
>gi|302664204|ref|XP_003023736.1| hypothetical protein TRV_02123 [Trichophyton verrucosum HKI 0517]
gi|291187746|gb|EFE43118.1| hypothetical protein TRV_02123 [Trichophyton verrucosum HKI 0517]
Length = 957
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 178/648 (27%), Positives = 278/648 (42%), Gaps = 125/648 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNET--DKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
G+A IK E+I+ N + D E D K+ KK ++ KG+N
Sbjct: 66 GLAPIKAEYIITFPKDGYDAPANNNSGRDDDAAEAAGYNDRDGEGKQGKKRREKQKGKNT 125
Query: 63 ARGPTF-VTKPEDCYCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
R F ++ E C + + + C+YG+ CKF H+ ++K K D++
Sbjct: 126 NR--RFQRSQDEKGLCGTITHNPEFSPKPCQYGDNCKFEHNLRKYLKEHKKADLTTFGGV 183
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWK-----------NTV 158
C V+ G C G CRF SH+ E I+ ED K+ K N
Sbjct: 184 CPVWDAFGVCSAGWRCRFVGSHMAEREHEDGRKKLILVEDEEKKKKAISSSATTSSINAT 243
Query: 159 GNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDT---DDCCKNQDSKVIEG 215
VN+++ E +Q + + Y K++ + E ++ + + D K G
Sbjct: 244 ELGVVNLVSTENKQLMTRKKYLTPKADAFNDWITVTSKELEERFHGRNFEEEADGKETNG 303
Query: 216 REEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPF 274
+ E++ N + K E + + SEK+++ + + L+PLTT GNLPF
Sbjct: 304 KAEVDG-NGEAKAKENSEENRARYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPF 359
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------------- 315
RRLC + GA T SEMA++ L++ + EWAL+K HESE L
Sbjct: 360 RRLCVELGAQFTYSEMAMSLPLMQGTKGEWALMKAHESEILPPTISPKQPVVKGYDHSRD 419
Query: 316 --FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
FG Q+ GN P+ K T++L + VD+N GCPI+ +Y+ G+GS LL+ +
Sbjct: 420 LKFGAQIAGNRPWQALKATEILTALCPHLRVVDLNCGCPIDLVYRDGAGSALLEHPSKL- 478
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
E+++ V+ PI + G T
Sbjct: 479 -------------------EKILRGMNAVSGEVPISAKIRMG----------------TK 503
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
N ++L + + G ++ N + G +TLHGR+R+QRYT++ADW+YI
Sbjct: 504 DNYPTALKLAERLVIGGYESNELGQG------PAGIGALTLHGRSRQQRYTREADWEYIS 557
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+C+ L R N RD + I R ++R+ Y
Sbjct: 558 ECSALVKRLNAK--------RDEVSDTI----REPDERHLPPGGKVY------------F 593
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ DY ++ KS + VM+ RGALIKPWIF+EI+ + D
Sbjct: 594 IGNGDCYSHADYNTAVDKS-GVDSVMVARGALIKPWIFEEIQAGQYLD 640
>gi|302499860|ref|XP_003011925.1| hypothetical protein ARB_01907 [Arthroderma benhamiae CBS 112371]
gi|291175479|gb|EFE31285.1| hypothetical protein ARB_01907 [Arthroderma benhamiae CBS 112371]
Length = 911
Score = 186 bits (473), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 183/655 (27%), Positives = 283/655 (43%), Gaps = 138/655 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEV----EDDGTAKKKFKKNKQVLKGQ 60
G+A IK E+I+ K S N R + E + DG K+ KK ++ KG+
Sbjct: 66 GLAPIKAEYIIT-FPKDGSDAPANNNSGRDDDAAEAAGYNDRDGEGKQG-KKRREKQKGK 123
Query: 61 NKARGPTF-VTKPEDCYCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDISE-- 114
N R F ++ E C + + + C+YG+ CKF H+ ++K K D++
Sbjct: 124 NTNR--RFQRSQDEKGLCGTITHNPEFSPKPCQYGDNCKFEHNLRKYLKEHKKADLTTFG 181
Query: 115 -QCYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWK-----------N 156
C V+ G C G CRF SH+ E I+ ED K+ K N
Sbjct: 182 GICPVWDAFGVCSAGWRCRFVGSHMAEREHEDGRKELILVEDEEKKKKAISSSATTSSIN 241
Query: 157 TVGNKTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKASKNENKDTDDCCKNQDSKV 212
VN+++ E +Q + + Y K++ I +K + + + D K
Sbjct: 242 ATELGVVNLVSTENKQLMTRKKYLTPKADAFNDWITVTSKELEERFHGRNFEEEEADGKE 301
Query: 213 IEGREEINTPNTDDVIKVQEETKS----GPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLT 267
G+ E++ + EE ++ P L SEK+++ + + L+PLT
Sbjct: 302 TNGKAEVDGNGETKAKESSEENRARYTEPPFLP--------SEKRRLYFGPETPVLAPLT 353
Query: 268 TVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------ 315
T GNLPFRRLC + GA T SEMA++ L++ + EWAL+K HESE L
Sbjct: 354 TQGNLPFRRLCVELGAQFTYSEMAMSLPLMQGTKGEWALMKAHESEILPPTISPKQPVVK 413
Query: 316 ---------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLL 365
FG Q+ GN P+ K T++L + VD+N GCPI+ +Y+ G+GS LL
Sbjct: 414 EYDHSRDLKFGAQIAGNRPWQALKATEILTALCPHLRVVDLNCGCPIDLVYRDGAGSALL 473
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+ + E+++ V+ PI + G
Sbjct: 474 EHPSKL--------------------EKILRGMNAVSGEVPISAKIRMG----------- 502
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
T N ++L + + G ++ N + G +TLHGR+R+QRYT++
Sbjct: 503 -----TKDNYPTALKLAERLVIGGYESNELGQGPA------GIGALTLHGRSRQQRYTRE 551
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW+YI +C+ L R N RD + I R ++R+ Y
Sbjct: 552 ADWEYISECSALVKRLN--------AKRDEVSDTI----REPDERHLPPGGKVY------ 593
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ DY ++ KS + VM+ RGALIKPWIF+EI+ + D
Sbjct: 594 ------FIGNGDCYSHADYNTAIDKS-GVDSVMVARGALIKPWIFEEIQAGQYLD 641
>gi|392870535|gb|EJB12039.1| tRNA-dihydrouridine synthase 3, variant [Coccidioides immitis RS]
Length = 698
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/569 (29%), Positives = 243/569 (42%), Gaps = 144/569 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDENG 142
+TC++G+ C+F H+ ++K K ED+ + C V+ +G C G CRF SH+ E
Sbjct: 138 RTCQFGDNCRFEHNLRKYLKEYKREDLKTFNGMCPVWDAYGLCFSGWKCRFVGSHMTER- 196
Query: 143 GNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE-KICKENKASKNENKDT 201
ED KE + N V +N +E K+ K K D
Sbjct: 197 ---ELEDGRKELVLVEDEERKNAAMPLVEGGAEGGVFNSISTEQKVDLMKKRRKTPKSDA 253
Query: 202 DDCCKNQDSKVIE----GRE-------EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
++ SK +E GR E N D+V + + K P L S
Sbjct: 254 YTTWLDETSKQLEIHNHGRRFADENNVEANGEARDEVEDRRAQFKEPPFLP--------S 305
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++ +++ EWAL+K
Sbjct: 306 EKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMKA 365
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
H+SE L FGVQ+ N P+ K T+++ + VD+N
Sbjct: 366 HQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDLN 425
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL+ +P L K
Sbjct: 426 CGCPIDLVYRDGAGSALLE------------HPSKLEK---------------------- 451
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN-----IIHNFM-- 460
IL+ + NEV P++ K R G KDN+ +I +
Sbjct: 452 -----------------ILRGMNAVSNEV---PVSAKIRMGT-KDNSPTALKLIERLVLG 490
Query: 461 -PKFRD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
P+F + G + ITLHGR+R+QRYT++ADW YI +CA L R N + R+
Sbjct: 491 GPEFTEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIRRLNERSDDLTDTIRE 550
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
L R GNGD S+EDY ++ +S +
Sbjct: 551 ADDRLQAPGRRVY------------------------FLGNGDCYSHEDYYRAIGES-GV 585
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
VMI RGAL+KPWIF+EI+ + D A
Sbjct: 586 DTVMIARGALMKPWIFEEIQAGQYLDKSA 614
>gi|406865469|gb|EKD18511.1| dihydrouridine synthase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 749
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 185/656 (28%), Positives = 283/656 (43%), Gaps = 163/656 (24%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLE----ELEVEDDGTAKKKFKKNKQVLKGQ 60
G+A +K EF+V+ + + + + D E + + D G K + K ++ KGQ
Sbjct: 88 GIAMVKPEFLVDTYTTRTATDSTFQVDDDAAEARKDDRDSNDAGGKKNRGDKKQKKQKGQ 147
Query: 61 NKARG-----------PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SK 108
NKAR T PE + P + C +G+ CK HD ++K K
Sbjct: 148 NKAREFGSWYDAIRLCNTLANSPE--FSP--------KKCNFGDSCKCCHDLRKYLKDGK 197
Query: 109 PEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKE----WKNTVGNK 161
E ++ +C V+ +HG C G CRF +SH E I +ED KE +++ +
Sbjct: 198 REGLTTFEGKCPVWEKHGICHAGWKCRFVASHSKE----IEREDGRKELVLIYRDGAEDT 253
Query: 162 TV---------NMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV 212
+ N+++ + + DL + +N +KSE+ + + + E
Sbjct: 254 PIEGEDRKEVYNVVSTKDKLDLARRRFNVDKSEEYTRWLEDEQKE--------------- 298
Query: 213 IEGREEINTPNTDDVIKVQEET---KSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTT 268
E+I DDV +E K P L SEK++I + + L+PLTT
Sbjct: 299 ---MEKIYHRKKDDVEDREENRAMFKDPPFL--------PSEKRRIYFGPETPVLAPLTT 347
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE--------------- 313
GNLPFRR+C ++GA +T SEMA+ T L++ EWAL+K HESE
Sbjct: 348 QGNLPFRRMCVEFGAQLTYSEMAMTTPLIQGQKSEWALMKAHESELSPPRYAPTSVVQNY 407
Query: 314 ----DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQR 367
DL F Q+ N P+ TK +++ + + V +D+N GCPIE +Y+ G+GS LL
Sbjct: 408 DNSKDLKFATQVSANKPWQATKAAEIMAKLLPHVRLMDLNCGCPIEMVYQSGAGSALL-- 465
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
+ P L E+M+ V+ P+ + G+ + I++
Sbjct: 466 ----------DAPSKL--------EKMIRGMNTVSGEIPVTAKIRMGTKTEKPNAKKIIE 507
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
+ GI N I G + ITLHGR+R+QRYTK AD
Sbjct: 508 RLAF---------------GGIESQNRIGAP--------GCAAITLHGRSRQQRYTKTAD 544
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W YI +CA L + N N + R Q K +I
Sbjct: 545 WGYIAECAALINGYNQDKDNLVDTIS---------APDERTQANGKDGKMYFI------- 588
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+ DY + ++ + + VM+ RGALIKPWIF+EI+ + D A
Sbjct: 589 ------GNGDCYSHVDYLDHIQNA-GVDSVMVARGALIKPWIFEEIETGQYLDKSA 637
>gi|119186423|ref|XP_001243818.1| hypothetical protein CIMG_03259 [Coccidioides immitis RS]
gi|121927069|sp|Q1E2F4.1|DUS3_COCIM RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|392870534|gb|EJB12038.1| tRNA-dihydrouridine synthase 3 [Coccidioides immitis RS]
Length = 724
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 167/569 (29%), Positives = 243/569 (42%), Gaps = 144/569 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDENG 142
+TC++G+ C+F H+ ++K K ED+ + C V+ +G C G CRF SH+ E
Sbjct: 138 RTCQFGDNCRFEHNLRKYLKEYKREDLKTFNGMCPVWDAYGLCFSGWKCRFVGSHMTER- 196
Query: 143 GNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE-KICKENKASKNENKDT 201
ED KE + N V +N +E K+ K K D
Sbjct: 197 ---ELEDGRKELVLVEDEERKNAAMPLVEGGAEGGVFNSISTEQKVDLMKKRRKTPKSDA 253
Query: 202 DDCCKNQDSKVIE----GRE-------EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
++ SK +E GR E N D+V + + K P L S
Sbjct: 254 YTTWLDETSKQLEIHNHGRRFADENNVEANGEARDEVEDRRAQFKEPPFLP--------S 305
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++ +++ EWAL+K
Sbjct: 306 EKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMKA 365
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
H+SE L FGVQ+ N P+ K T+++ + VD+N
Sbjct: 366 HQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDLN 425
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL+ +P L K
Sbjct: 426 CGCPIDLVYRDGAGSALLE------------HPSKLEK---------------------- 451
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN-----IIHNFM-- 460
IL+ + NEV P++ K R G KDN+ +I +
Sbjct: 452 -----------------ILRGMNAVSNEV---PVSAKIRMGT-KDNSPTALKLIERLVLG 490
Query: 461 -PKFRD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
P+F + G + ITLHGR+R+QRYT++ADW YI +CA L R N + R+
Sbjct: 491 GPEFTEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIRRLNERSDDLTDTIRE 550
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
L R GNGD S+EDY ++ +S +
Sbjct: 551 ADDRLQAPGRRVY------------------------FLGNGDCYSHEDYYRAIGES-GV 585
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
VMI RGAL+KPWIF+EI+ + D A
Sbjct: 586 DTVMIARGALMKPWIFEEIQAGQYLDKSA 614
>gi|326476902|gb|EGE00912.1| tRNA-dihydrouridine synthase [Trichophyton tonsurans CBS 112818]
gi|326481010|gb|EGE05020.1| tRNA-dihydrouridine synthase [Trichophyton equinum CBS 127.97]
Length = 755
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 181/663 (27%), Positives = 273/663 (41%), Gaps = 154/663 (23%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNET--DKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
G+A IK E+I+ N + D E D K+ KK ++ KG+N
Sbjct: 66 GLAPIKAEYIITFPKDGADAPANNNSGRDDDAAEAAGYNDRDGEGKQGKKRREKQKGKNT 125
Query: 63 AR-----------------GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM 105
R P F KP C+YG+ CKF H+ ++
Sbjct: 126 NRRFQRSHDEKGLCGTITHNPEFSPKP----------------CQYGDNCKFEHNLRKYL 169
Query: 106 KS-KPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWK 155
K K D++ C V+ G C G CRF SH+ E I+ ED K+ K
Sbjct: 170 KEHKKADLTTFGGICPVWDAFGVCSAGWRCRFVGSHMAEREHEDGRKELILVEDEEKKKK 229
Query: 156 -----------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKASKNENKD 200
N VN+++ E +Q + + Y K++ I +K +
Sbjct: 230 ALSSSTTASSINATELGVVNLVSTENKQLMTRKKYLTPKADAFNDWITVTSKELEERFHG 289
Query: 201 TDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGK 260
+ + D K G+ E++ N + K E + + SEK+++ + +
Sbjct: 290 RNFEEEEADGKETNGKAEVDG-NGEAKAKDSSEENRARYTEPPFLP---SEKRRLYFGPE 345
Query: 261 L-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL---- 315
L+PLTT GNLPFRRLC + GA T SEMA++ L++ + EWAL+K HESE L
Sbjct: 346 TPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPLMQGTKGEWALMKAHESEILPPAI 405
Query: 316 -----------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYK 357
FG Q+ GN P+ K T++L + VD+N GCPI+ +Y+
Sbjct: 406 SPKQPIVKGYDHSRDLKFGAQIAGNRPWQALKATEILTALCPHLRVVDLNCGCPIDLVYR 465
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
G+GS LL+ + L G N V+ PI + G
Sbjct: 466 DGAGSALLEHPSKLEKILRGMNA--------------------VSGEVPISAKIRMG--- 502
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
T N ++L + + G ++ N + G +TLHGR+
Sbjct: 503 -------------TKDNYPTALKLAERLVIGGYESNELGQGSA------GIGALTLHGRS 543
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRYT++ADW+YI +C+ L R N RD + + R ++R+
Sbjct: 544 RQQRYTREADWEYISECSALVKRLNAK--------RDEVSDTV----REPDERHLPPGGK 591
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
Y GNGD S+ DY ++ KS + VM+ RGALIKPWIF+EI+ +
Sbjct: 592 VY------------FIGNGDCYSHADYNTAIDKS-GVDSVMVARGALIKPWIFEEIQAGQ 638
Query: 598 LFD 600
D
Sbjct: 639 YLD 641
>gi|407404442|gb|EKF29893.1| hypothetical protein MOQ_006305 [Trypanosoma cruzi marinkellei]
Length = 527
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 118/384 (30%), Positives = 178/384 (46%), Gaps = 112/384 (29%)
Query: 227 VIKVQEETKSGPVLDTDIIKIKNSE--------KKKIDWQGKLYLSPLTTVGNLPFRRLC 278
V++ +E + ++D+ + K SE +++ ++ KL L+PLTTVGNLPFRR+C
Sbjct: 129 VLQKNDEGERDATRNSDLARTKESEENVRENAARRRALFKNKLVLAPLTTVGNLPFRRVC 188
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K +GADIT S M++ L + EW+L++RHESED+FG+Q+ + P + +E
Sbjct: 189 KGYGADITVSSMSLVYNLNRLQKSEWSLLRRHESEDIFGLQIAVSQPQSAHTWAKAIEAS 248
Query: 339 -MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+ DF+D+N GCP++ I G G GL +R + + ++ +
Sbjct: 249 GYSYDFIDINCGCPVQMIMSAGCGCGLWERRD--------------NRLRDIVRSLVQHQ 294
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
V++ C I G+G+ N +SL H
Sbjct: 295 SKPVSIKCRI------GAGA----------------NSNASL-----------------H 315
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
+ + +WGA +T+HGR R QRYTK A+W+YI+ CA S
Sbjct: 316 EKIGDYEEWGAEAVTIHGRFRAQRYTKLANWEYIDNCAARTS------------------ 357
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577
P+ GNGDI SYED + ++ P IS
Sbjct: 358 --------------------------------LPVIGNGDIFSYEDIIDHRERYPHISSY 385
Query: 578 MIGRGALIKPWIFQEIKEKKLFDI 601
MIGRGALIKPWIF+EIK+++ DI
Sbjct: 386 MIGRGALIKPWIFEEIKQEQPRDI 409
>gi|407041361|gb|EKE40687.1| dihydrouridine synthase (dus) protein [Entamoeba nuttalli P19]
Length = 515
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 140/509 (27%), Positives = 217/509 (42%), Gaps = 172/509 (33%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
E CK+ HD ++ + + + C +F ++G+CP G C + SH++E G I +V+K
Sbjct: 67 ENCKYSHDLKEYLSKRTDLLEGICPLFKEYGFCPNGYTCEWYKSHINEQGELITNNEVMK 126
Query: 153 EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV 212
+ +N E LR + ++F
Sbjct: 127 LHP---FKEPLNTQKPETLHVLRTNKFDF------------------------------- 152
Query: 213 IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
K+ EE PV + I+ +K GKL L L T GNL
Sbjct: 153 ----------------KIPEEF---PVPEKKILDLK----------GKLILPSLCTFGNL 183
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFR++ K++G D+T +EM +A L++ EWAL+KR SED+FG+QLC N + K
Sbjct: 184 PFRKVVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDPSEDIFGIQLCVGNSMLAAKAC 243
Query: 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
Q+L + DF ++N CPI+++YK+G G+ L++R L + + T+
Sbjct: 244 QVL-NSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLL-----HAMRSVTER--- 294
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
P+ + G S N +Q V+
Sbjct: 295 -------------PVAIKVRTGKSS------NTIQDVL---------------------- 313
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+P D+GA+++++HGRTR+QRYTK ADWD+I++
Sbjct: 314 -------LPNCADYGAAMVSIHGRTRDQRYTKSADWDFIKQ------------------- 347
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
A+ IT +C P+ G GDI Y+DY ++L
Sbjct: 348 ----ATTIT--------------------QC-------PVIGVGDIYGYKDYQKAL--DC 374
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ V IGRGALIKPWI+ EIKEK+ +DI
Sbjct: 375 GVTTVAIGRGALIKPWIYTEIKEKRDWDI 403
>gi|3859982|gb|AAC72941.1| unknown [Homo sapiens]
Length = 223
Score = 185 bits (470), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/215 (40%), Positives = 124/215 (57%), Gaps = 51/215 (23%)
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
T+LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MN+V +P+TVK R
Sbjct: 2 TRLLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIR 61
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
TG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW YIE+C Q
Sbjct: 62 TGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQ---------- 111
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
SP PL+GNGDILS+ED
Sbjct: 112 ---------------------------------------AASPMPLFGNGDILSFEDANR 132
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 133 AMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 165
>gi|71414125|ref|XP_809176.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70873517|gb|EAN87325.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 529
Score = 185 bits (470), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 118/392 (30%), Positives = 181/392 (46%), Gaps = 112/392 (28%)
Query: 219 INTPNTDDVIKVQEETKSGPVLDTDIIKIKNSE--------KKKIDWQGKLYLSPLTTVG 270
I++ + V++ EE + ++D+ + K SE +++ ++ KL L+PLTTVG
Sbjct: 122 IDSHADEIVLQKNEEDERDATRNSDLARTKQSEENVRENAARRRALFKNKLVLAPLTTVG 181
Query: 271 NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330
NLPFRR+CK +GADIT S M++ + L + EW+L++RHESED+FG+Q+ + P
Sbjct: 182 NLPFRRVCKGYGADITVSSMSLVSNLNRLQKGEWSLLRRHESEDVFGLQIAVSQPQSAQT 241
Query: 331 CTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQL 389
+ +E + DF+D+N GCP++ I G G GL +R
Sbjct: 242 WAKAIEASGYSYDFIDINCGCPVQMIMSAGCGCGLWER---------------------- 279
Query: 390 LEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449
+ + D V S L+Q ++ + I + G
Sbjct: 280 -RDNRLRDIV-----------------SSLVQ------------HQSKPVSIKCRIGAGA 309
Query: 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFM 509
+ + ++ H + + WGA +T+HGR R QRYTK A+W+YI+ CA S
Sbjct: 310 NSNASL-HEKIGDYEGWGADAVTIHGRFRAQRYTKLANWEYIDSCAARTS---------- 358
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
P+ GNGDI SYED +
Sbjct: 359 ----------------------------------------LPVIGNGDIFSYEDIIGHRE 378
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ P +S MIGRGALIKPWIF+EIK+++ DI
Sbjct: 379 RYPHVSSYMIGRGALIKPWIFEEIKQEQPRDI 410
>gi|307105362|gb|EFN53612.1| hypothetical protein CHLNCDRAFT_25754 [Chlorella variabilis]
Length = 385
Score = 185 bits (469), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/332 (33%), Positives = 155/332 (46%), Gaps = 108/332 (32%)
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQL 334
RR+CK GAD+TC EMA+A T L
Sbjct: 7 RRVCKGLGADVTCGEMALA--------------------------------------TNL 28
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLE 391
L+ Q P E+ LL+R + FGVQLCG L +C QL+E
Sbjct: 29 LQGQ------------PSEW--------ALLKRHPSEDCFGVQLCGGYADSLARCAQLVE 68
Query: 392 EQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451
EQ VDFVDVN GCPI+ + +G+GS L + +Q+++ M+ V S P+T K+R G H
Sbjct: 69 EQCCVDFVDVNFGCPIDVVCSKGAGSACLLKPQRMQAIVRGMSSVLSCPVTFKSRKGYHD 128
Query: 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPK 511
++ H +P+ WGA+ +TLHGRTREQRY++ ADW YI++C +
Sbjct: 129 GQDMAHTLIPQAAGWGAAAVTLHGRTREQRYSRLADWPYIKRCVEAAE------------ 176
Query: 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
G L + GNGD+ S+ED+ L++
Sbjct: 177 ----GTGLQVV-------------------------------GNGDVFSFEDHYRHLEEC 201
Query: 572 PSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
P ++ I RGALIKPWIF EIKE++ +DI A
Sbjct: 202 PGLATTYIARGALIKPWIFTEIKERRHWDISA 233
>gi|451846485|gb|EMD59795.1| hypothetical protein COCSADRAFT_100973 [Cochliobolus sativus
ND90Pr]
Length = 711
Score = 185 bits (469), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 154/557 (27%), Positives = 247/557 (44%), Gaps = 132/557 (23%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGG- 143
C +GEKCKF HD ++K + ED++ QC ++ G+C G CRF SH +E
Sbjct: 133 CPFGEKCKFEHDLRKYLKEGRREDLTTFDGQCPIYAVKGFCHFGWKCRFVGSHSEERTTE 192
Query: 144 NIVKEDVLKE----WKNTVGN------KTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
+ KE VLKE GN + VN++ EV+ L + +S++ + ++
Sbjct: 193 DGRKELVLKENAELKAKLSGNDDEAEAEVVNIVPKEVKFGLSRRKIGTPRSDQYLQWIES 252
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
+ +D D + +++K ++E + ++ + SEK+
Sbjct: 253 NSRNERDMFDAAQMDP----------------EILKEEKEARRAEYVEA---PFRPSEKR 293
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
++ + + L+PLTT GNLP+RRLC +G +T SEMA+ L++ EWAL+K HES
Sbjct: 294 RLYYGPETPMLAPLTTQGNLPYRRLCIDFGCQVTWSEMAMGMPLIQGDKGEWALMKAHES 353
Query: 313 E--------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGC 350
E DL FG Q+ N P++ TK ++L + + +D+N GC
Sbjct: 354 EISPPKFLAENTVVQGYDNSTDLKFGAQIAANKPWLATKTVEVLTDHCPKLRAIDLNCGC 413
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI + ++GSGS LL ++ E ++ V+ PI
Sbjct: 414 PINLVCEKGSGSALLD--------------------SEAKLEHILRGMAYVSKEVPITVK 453
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
+ G+ +++ ++ +E V++ G G +
Sbjct: 454 IRMGTKDNHPTAQKLIKRLVLGGHEA------VESGKGTS----------------GIAA 491
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
ITLHGR+++QRYTK ADW YI +C+ L +R R
Sbjct: 492 ITLHGRSKQQRYTKSADWSYIAECSALINR----------------------------LR 523
Query: 531 YTKQADWDYIEKC--AQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
K A D I + L + +Y GNGD S+ DY L+ + + VM GRGALIK
Sbjct: 524 KEKDAQTDTIAEADPRDLANGGHVYFVGNGDFYSHIDYYNHLENA-KVDTVMAGRGALIK 582
Query: 587 PWIFQEIKEKKLFDIYA 603
PW+F+EI++ + D A
Sbjct: 583 PWLFEEIEQGQYLDKSA 599
>gi|342883360|gb|EGU83873.1| hypothetical protein FOXB_05587 [Fusarium oxysporum Fo5176]
Length = 670
Score = 184 bits (468), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 183/640 (28%), Positives = 271/640 (42%), Gaps = 154/640 (24%)
Query: 3 ASGVAKIKQEFIVEDHV-KVLSIECVNETDK---RKLEELEVEDDGTAKKKFKKNKQVLK 58
+ GVA IK+E++V+ K S + VN+ D R E E+ G K K ++ K
Sbjct: 95 SKGVAPIKKEYLVDMSTQKDASNDAVNDDDAAEARGTAEGNAEN-GDRKPGKGKKEKKKK 153
Query: 59 GQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFM----KSKPEDIS 113
GQN R F C + CK+G++C+ HD ++ + E
Sbjct: 154 GQNTERDFGKFDDAFRLCNSRAFYPEFSPRECKFGDRCRLCHDIRKYLEEGRRGDVETFE 213
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWK--NTVGNK---------- 161
+C VF HG+CP G CRF SH++E I ED KE +T N
Sbjct: 214 GKCPVFEAHGHCPSGWKCRFVKSHMEE----IEHEDGRKELVLISTSANSGENGEPKDEG 269
Query: 162 -------TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE 214
N+++ + + DL + +F +S++ NE K +++ + ++ E
Sbjct: 270 SEEQRPAIFNVVSMDKKIDLNRKRTDFTRSDQYIT---WLNNEAKLSEEFMNRRKNQSTE 326
Query: 215 GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLP 273
G E++ D K SEK+++ + Q L+PLTT GNLP
Sbjct: 327 GIEDLRARFVDP-------------------PFKPSEKRRLYFGQETPTLAPLTTQGNLP 367
Query: 274 FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQ 333
FRRLC + GA +T SEMA+++ + IK FG Q+ GNN +V+TK
Sbjct: 368 FRRLCVELGAQLTYSEMALSSVPIFDDYDHSKDIK-------FGAQISGNNHWVVTKAAD 420
Query: 334 LLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
+L + +D+N GCPI+ ++K G GS LL+
Sbjct: 421 VLNRYCPHLRLIDLNCGCPIDMVFKSGGGSALLE-------------------------- 454
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHK 451
SG L+R +I MN VS +PIT K RTGI
Sbjct: 455 -----------------------NSGKLER------MIRGMNAVSGEVPITAKIRTGIRN 485
Query: 452 DNNIIHNFMPKF----RDW-------GASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+ K R+ G + +TLHGR+REQRYTK+ADW YI +CA L
Sbjct: 486 SRPTATQLIGKLAFGAREHRERLGAPGCAALTLHGRSREQRYTKKADWGYISECAALIKT 545
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N + AS + ++ R GNGD S
Sbjct: 546 YNKQKDTLTDTIAEPDASSLP---NAKDGRMY-------------------FLGNGDCYS 583
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ +Y E ++K+ + VMIGRGALIKPW+F+EI++ + D
Sbjct: 584 HTEYYEHIEKA-RVDTVMIGRGALIKPWLFEEIEKGQYLD 622
>gi|67471577|ref|XP_651736.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56468508|gb|EAL46349.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 515
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 217/509 (42%), Gaps = 172/509 (33%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
E CK+ HD ++ + + + C +F ++G+CP G C + SH++E G I +++K
Sbjct: 67 ENCKYSHDLKEYLSKRTDLLEGICPLFKEYGFCPNGYTCEWYKSHINEQGELITNNELMK 126
Query: 153 EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV 212
+ +N E LR + ++F
Sbjct: 127 LHP---FKEPLNTQKPETLHVLRTNKFDF------------------------------- 152
Query: 213 IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
K+ EE PV + I+ +K GKL L L T GNL
Sbjct: 153 ----------------KIPEEF---PVPEKKILDLK----------GKLILPSLCTFGNL 183
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFR++ K++G D+T +EM +A L++ EWAL+KR SED+FG+QLC N + K
Sbjct: 184 PFRKVVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDSSEDIFGIQLCVGNSMLAAKAC 243
Query: 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
Q+L + DF ++N CPI+++YK+G G+ L++R L + + T+
Sbjct: 244 QVL-NSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLL-----HAMRSVTER--- 294
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
P+ + G S N +Q V+
Sbjct: 295 -------------PVAIKVRTGKSS------NTIQDVL---------------------- 313
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+P D+GA+++++HGRTR+QRYTK ADWD+I++
Sbjct: 314 -------LPNCADYGAAMVSIHGRTRDQRYTKSADWDFIKQ------------------- 347
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
A+ IT +C P+ G GDI Y+DY ++L
Sbjct: 348 ----ATTIT--------------------QC-------PVIGVGDIYGYKDYQKAL--DC 374
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ V IGRGALIKPWI+ EIKEK+ +DI
Sbjct: 375 GVATVAIGRGALIKPWIYTEIKEKRDWDI 403
>gi|345571095|gb|EGX53910.1| hypothetical protein AOL_s00004g569 [Arthrobotrys oligospora ATCC
24927]
Length = 682
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 163/624 (26%), Positives = 259/624 (41%), Gaps = 142/624 (22%)
Query: 5 GVAKIKQEFIVE-DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKF-KKNKQVLKGQNK 62
G+A IK E++++ V+ L ++ + + ++ + +KF K K+ GQNK
Sbjct: 63 GIAPIKVEYLLQPGSVQSLPPAPDDDAAEARSNTIDGSEAPAGGRKFTKAEKKARTGQNK 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVF 119
AR F E C L + + C +G+KC+ HD ++ + C V+
Sbjct: 123 AR--RFGKYGEYVGLCRSRALVNEFSKADCGFGDKCRESHDIREYLDQRENLNDTVCPVW 180
Query: 120 LQHGYCPMGIACRFGSSHL--------DENGGN-------IVKEDVLKEW--KNTVGNKT 162
G CP+G C++ SH+ D G I+ ED ++ V
Sbjct: 181 ADIGKCPVGWKCKWIKSHMQDVEVPSADPTTGATRKELQLIIDEDKYDKYIAAQGVAGSL 240
Query: 163 VNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTP 222
N ++ E ++ L + + +E+S+ K + E + ++ ++ E R
Sbjct: 241 KNEISAETKRALSRKQFTYERSDPFLKYLDETSGEER------RDNNASYREAR------ 288
Query: 223 NTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKW 281
+ SEK+++ + L+PLTT GNLPFRRLC
Sbjct: 289 ------------------------FRPSEKRRLHISAETPLLAPLTTTGNLPFRRLCTTL 324
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ-MA 340
GA IT SEMA++ L+K EWALI+ H SE FGVQ+ P+ K T++L +
Sbjct: 325 GASITYSEMAMSIPLIKGEKSEWALIRAHSSEKNFGVQISAKKPWEALKATEVLAHYCPS 384
Query: 341 VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
++ +D+N GCPI+ + + G G+ LL++ + + G N YV + + V
Sbjct: 385 LNLIDMNSGCPIDLVCRPGGGAALLEQQSKLSKMMRGMN-YVSGE---------IPITVK 434
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVI-TCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
+ GC + + Q VI ++E IT
Sbjct: 435 IRTGCS--------------DKHPVAQKVIRRLIDEGDVAAIT----------------- 463
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
LHGR+R+QRY+++ADW YI +CA L
Sbjct: 464 -------------LHGRSRQQRYSREADWGYIAECAAL---------------------- 488
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
+H E++ D EK GNGD SYEDY ++ + V+I
Sbjct: 489 --IHRLKEEKQEAMDTSEDDKEKSESRRLVPYFIGNGDCYSYEDYYRAVDDC-HVDSVLI 545
Query: 580 GRGALIKPWIFQEIKEKKLFDIYA 603
RGAL+KPWIF+EI K+ D A
Sbjct: 546 ARGALMKPWIFEEIHAKQYLDKTA 569
>gi|449701838|gb|EMD42583.1| tRNA-dihydrouridine synthase, putative [Entamoeba histolytica KU27]
Length = 515
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 139/509 (27%), Positives = 217/509 (42%), Gaps = 172/509 (33%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
E CK+ HD ++ + + + C +F ++G+CP G C + SH++E G I +++K
Sbjct: 67 ENCKYSHDLKEYLSKRTDLLEGICPLFKEYGFCPNGYTCEWYKSHINEQGELITNNELMK 126
Query: 153 EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV 212
+ +N E LR + ++F
Sbjct: 127 LHP---FKEPLNTQKPETLHVLRTNKFDF------------------------------- 152
Query: 213 IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
K+ EE PV + I+ +K GKL L L T GNL
Sbjct: 153 ----------------KIPEEF---PVPEKKILDLK----------GKLILPSLCTFGNL 183
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFR++ K++G D+T +EM +A L++ EWAL+KR SED+FG+QLC N + K
Sbjct: 184 PFRKVVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDPSEDIFGIQLCVGNSMLAAKAC 243
Query: 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
Q+L + DF ++N CPI+++YK+G G+ L++R L + + T+
Sbjct: 244 QVL-NSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLL-----HAMRSVTER--- 294
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
P+ + G S N +Q V+
Sbjct: 295 -------------PVAIKVRTGKSS------NTIQDVL---------------------- 313
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+P D+GA+++++HGRTR+QRYTK ADWD+I++
Sbjct: 314 -------LPNCADYGAAMVSIHGRTRDQRYTKSADWDFIKQ------------------- 347
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
A+ IT +C P+ G GDI Y+DY ++L
Sbjct: 348 ----ATTIT--------------------QC-------PVIGVGDIYGYKDYQKAL--DC 374
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ V IGRGALIKPWI+ EIKEK+ +DI
Sbjct: 375 GVATVAIGRGALIKPWIYTEIKEKRDWDI 403
>gi|315043164|ref|XP_003170958.1| hypothetical protein MGYG_06949 [Arthroderma gypseum CBS 118893]
gi|311344747|gb|EFR03950.1| hypothetical protein MGYG_06949 [Arthroderma gypseum CBS 118893]
Length = 734
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 157/568 (27%), Positives = 245/568 (43%), Gaps = 131/568 (23%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENG 142
+ C+YG+ CKF H+ ++K K +D++ C V+ G C G CRF SH+ E
Sbjct: 130 KPCQYGDNCKFEHNLRKYLKEHKKQDLTTFGGICPVWDAFGVCSAGWRCRFVGSHMAERE 189
Query: 143 GN------IVKEDVLKEWK-----------NTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
I+ ED K+ K N VN+++ E +Q + + Y K++
Sbjct: 190 HEDGRKELILVEDEEKKKKALSASAVTSSINATELGVVNLVSTENKQLMTRKKYLTPKAD 249
Query: 186 K------ICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS--- 236
+ + + ++ +D + + K G+ E+ + + EE K+
Sbjct: 250 AFNEWITVTSKELEERFHGRNFED--EEAEGKETNGKAEVEGNGESEAKERSEENKARYT 307
Query: 237 -GPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
P L SEK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++
Sbjct: 308 EPPFLP--------SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSL 359
Query: 295 ELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYVLTKCTQ 333
L++ + EWAL+K HESE L FG Q+ GN P+ K T+
Sbjct: 360 PLMQGTKGEWALMKAHESEILPPTISPKQPIVKGYDHSRDLKFGAQIAGNRPWQALKATE 419
Query: 334 LLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
+L + VD+N GCPI+ +Y+ G+GS LL+ + L G N
Sbjct: 420 ILTALCPHLRVVDLNCGCPIDLVYRDGAGSALLEHPSKLEKILRGMNA------------ 467
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
V+ PI + G T N ++L + + G ++
Sbjct: 468 --------VSGEVPISAKIRMG----------------TKDNYPTALKLAERLVIGGYES 503
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
N + G +TLHGR+R+QRYT++ADW+YI +C+ L R N
Sbjct: 504 NELRQGPA------GIGALTLHGRSRQQRYTREADWEYISECSALVKRLNAKGDEVSDTI 557
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
R+ + G+ GNGD S+ DY +++KS
Sbjct: 558 REPDERHLPPDGKVF------------------------FIGNGDCYSHADYNSAVEKS- 592
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ VM+ RGALIKPWIF+EI+ + D
Sbjct: 593 GVDSVMVARGALIKPWIFEEIQAGQYLD 620
>gi|358387738|gb|EHK25332.1| hypothetical protein TRIVIDRAFT_31898 [Trichoderma virens Gv29-8]
Length = 741
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 162/562 (28%), Positives = 242/562 (43%), Gaps = 145/562 (25%)
Query: 89 CKYGEKCKFVHDKNVFM-KSKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDE-NGG 143
C YG+ CK HD ++ + + ED+ +C F +GYC G CRF SH+ E
Sbjct: 162 CPYGDGCKMCHDLRKYLSEGRREDVEALGGKCPAFEAYGYCASGWKCRFVKSHMQEIEHA 221
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
+ KE VL + + G+K + +E +LR +N + + N+ + K TD
Sbjct: 222 DGRKELVLSDNRPPKGSKFEDRGKSE--DELRPGIFNVVTMGQKIELNRKRLDFTK-TDQ 278
Query: 204 CCK--NQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIK-------IKNSEKKK 254
+ N ++ + + K P L + ++ K SEK++
Sbjct: 279 YIQWLNHEAGISQ--------------DFHHRRKDQPALGIEDLRARFVDPPFKPSEKRR 324
Query: 255 IDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+ + + L+PLTT GNLPFRRLC + G T SEMA+ LL+ S +W L++ H+SE
Sbjct: 325 LYFGPETPTLAPLTTQGNLPFRRLCVELGCQATYSEMALGMPLLQGSKPDWTLMRAHKSE 384
Query: 314 ---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGC 350
DL FG Q+ G+ +V+TK +L + +D+N GC
Sbjct: 385 ITPPKMNPGAIPLFDDYNHSRDLKFGAQISGSAHWVVTKAADVLNRYCPHLRVIDLNCGC 444
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI+ ++K G+GS LL
Sbjct: 445 PIDKVFKSGAGSALL--------------------------------------------- 459
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF----RD 465
SG ++R +I MN VS +PI+ K RTG+ KD + + K R+
Sbjct: 460 ----DASGKMER------MIRGMNAVSGEIPISAKIRTGVRKDRSTATQIIGKLAFGSRE 509
Query: 466 W-------GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
G + +TLHGR+REQRYTK ADW YI +CA L + + D A
Sbjct: 510 HRERLGAPGCAALTLHGRSREQRYTKTADWGYIGECAAL-----------IKTYNDEKAK 558
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
+ E + D GNGD S+ DY E ++K+ + VM
Sbjct: 559 ITDTIAEPDESTLSNAKDGRMY-----------FLGNGDCYSHVDYYEHIEKA-RVDTVM 606
Query: 579 IGRGALIKPWIFQEIKEKKLFD 600
IGRGALIKPWIF+EI++ + D
Sbjct: 607 IGRGALIKPWIFEEIEKGQYLD 628
>gi|451994606|gb|EMD87076.1| hypothetical protein COCHEDRAFT_1114296 [Cochliobolus
heterostrophus C5]
Length = 709
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/557 (27%), Positives = 246/557 (44%), Gaps = 132/557 (23%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGG- 143
C +GEKCKF HD ++K + ED++ QC ++ G+C G CRF SH +E
Sbjct: 131 CPFGEKCKFEHDLRKYLKEGRREDLTTFDGQCPIYAVKGFCHFGWKCRFVGSHSEERTTE 190
Query: 144 NIVKEDVLKEWK----------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
+ KE VLKE + + VN++ EV+ L + +S++ + ++
Sbjct: 191 DGRKELVLKENAELKAKLSGDDDEAEAEVVNIVPKEVKFGLSRRKIGTPRSDQYLQWIES 250
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
+ +D D + +++K ++E + ++ K SEK+
Sbjct: 251 NSRNERDMFDAAQMDP----------------EILKEEKEARRAEYVEA---PFKPSEKR 291
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
++ + + L+PLTT GNLP+RRLC +G +T SEMA+ L++ EWAL+K HES
Sbjct: 292 RLYYGPETPMLAPLTTQGNLPYRRLCIDFGCQVTWSEMAMGMPLIQGDKGEWALMKAHES 351
Query: 313 E--------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGC 350
E DL FG Q+ N P++ TK ++L + + +D+N GC
Sbjct: 352 EISPPKFLAKNTVVQGYDNSTDLKFGAQIAANKPWLATKTVEVLTDHCPKLRAIDLNCGC 411
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI + ++GSGS LL ++ E ++ V+ PI
Sbjct: 412 PINLVCEKGSGSALLD--------------------SEAKLEHILRGMTYVSKEVPITVK 451
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
+ G+ +++ ++ +E V++ G G +
Sbjct: 452 IRMGTKDNHPTAQKLIKRLVLGGHEA------VESGKGTS----------------GIAA 489
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
ITLHGR+++QRYTK ADW YI +C+ L +R R
Sbjct: 490 ITLHGRSKQQRYTKSADWSYIAECSALINR----------------------------LR 521
Query: 531 YTKQADWDYIEKC--AQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
K A D I + L + +Y GNGD S+ DY L+ + + VM GRGALIK
Sbjct: 522 KEKDAQTDTIAEADPRDLANGGHVYFVGNGDCYSHIDYYNHLENA-KVDTVMAGRGALIK 580
Query: 587 PWIFQEIKEKKLFDIYA 603
PW+F+EI++ + D A
Sbjct: 581 PWLFEEIEKGQYLDKSA 597
>gi|238487170|ref|XP_002374823.1| tRNA dihydrouridine synthase, putative [Aspergillus flavus
NRRL3357]
gi|220699702|gb|EED56041.1| tRNA dihydrouridine synthase, putative [Aspergillus flavus
NRRL3357]
Length = 730
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 180/637 (28%), Positives = 264/637 (41%), Gaps = 119/637 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA +K EFI+ + E TD E + ++ KK K+ GQN R
Sbjct: 63 GVAPVKPEFIIP---RATGTEPQPNTDD--AAEAARHEGAQGQEAGKKKKKKPTGQNTNR 117
Query: 65 GPTF-VTKPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF ++ E CP C++GEKC+F HD ++K K D++ C
Sbjct: 118 --TFGSSQDEKGLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLKEYKRGDLTTFDGVCP 175
Query: 118 VFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
V+ G C G CR SH+ E + KE VL E + K L +D
Sbjct: 176 VWDAKGKCLSGWKCRLLGSHMTERETADGRKELVLVE--DEERKKKAQPLVPFAVEDGTA 233
Query: 177 HTYNFEKSEKICKENKASKNENKDTD----DCCKNQDSKVIEGRE---EINTPNTDDVIK 229
+ E KI K K D D + KVI RE E + D +
Sbjct: 234 NIAPIEA--KIALNRKKVKTPRADAYGSWLDKTSRELEKVIHNREVHEERGAESKTDQAE 291
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
++E L+ + SEK++I + + L+PLTT GNLPFRRLC + GA T S
Sbjct: 292 REKEDNRAQYLEPPFLP---SEKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYS 348
Query: 289 EMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYV 327
EMA++ L++ EWAL++ HE+E L FG Q+ N +
Sbjct: 349 EMALSMPLIQGQRGEWALMRAHETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQ 408
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 409 ALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKLERILRGMN------- 461
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G+ + + +I E S+L +
Sbjct: 462 -------------AVSQEIPITAKIRMGTRDNSPNALKLAERLILGGYESSTLGLGAP-- 506
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + +TLHGR+R+QRYT+QADW YI +CA L R N
Sbjct: 507 --------------------GVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTD 546
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
+ R+ G+T W GNGD S+ DY +
Sbjct: 547 HVTDTVREPDPRTQPNGGKT----------W--------------FLGNGDCYSHLDYDD 582
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 583 HVNNA-GVDTVMVGRGALIKPWLFEEIQAGQYLDKSA 618
>gi|169770417|ref|XP_001819678.1| tRNA-dihydrouridine synthase 3 [Aspergillus oryzae RIB40]
gi|121804085|sp|Q2UL89.1|DUS3_ASPOR RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|83767537|dbj|BAE57676.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 730
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 180/637 (28%), Positives = 263/637 (41%), Gaps = 119/637 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA +K EFI+ + E TD E + ++ KK K+ GQN R
Sbjct: 63 GVAPVKPEFIIP---RATGTEPQPNTDD--AAEAARHEGAQGQEAGKKKKKKPTGQNTNR 117
Query: 65 GPTF-VTKPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF ++ E CP C++GEKC+F HD ++K K D++ C
Sbjct: 118 --TFGSSQDEKGLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLKEYKRGDLTTFDGVCP 175
Query: 118 VFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
V+ G C G CR SH+ E + KE VL E + K L +D
Sbjct: 176 VWDAKGKCLSGWKCRLVGSHMTERETADGRKELVLVE--DEERKKKAQPLVPFAVEDGTA 233
Query: 177 HTYNFEKSEKICKENKASKNENKDTD----DCCKNQDSKVIEGRE---EINTPNTDDVIK 229
+ E KI K K D D + KVI RE E + D +
Sbjct: 234 NIAPIEA--KIALNRKKVKTPRADAYGSWLDKTSRELEKVIHNREVHEERGAESKTDQAE 291
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
++E L+ + SEK++I + + L+PLTT GNLPFRRLC + GA T S
Sbjct: 292 REKEDNRAQYLEPPFLP---SEKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYS 348
Query: 289 EMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYV 327
EMA++ L++ EWAL++ HE+E L FG Q+ N +
Sbjct: 349 EMALSMPLIQGQRGEWALMRAHETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQ 408
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 409 ALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKLERILRGMN------- 461
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G+ + + +I E S+L +
Sbjct: 462 -------------AVSQEIPITAKIRMGTRDNSPNALKLAERLILGGYESSTLGLGAP-- 506
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + +TLHGR+R+QRYT+QADW YI +CA L R N
Sbjct: 507 --------------------GVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTD 546
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
R+ G+T W GNGD S+ DY +
Sbjct: 547 QVTDTVREPDPRTQPNGGKT----------W--------------FLGNGDCYSHLDYDD 582
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 583 HVNNA-GVDTVMVGRGALIKPWLFEEIQAGQYLDKSA 618
>gi|169616904|ref|XP_001801867.1| hypothetical protein SNOG_11628 [Phaeosphaeria nodorum SN15]
gi|187471071|sp|Q0U9D6.2|DUS3_PHANO RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|160703286|gb|EAT81336.2| hypothetical protein SNOG_11628 [Phaeosphaeria nodorum SN15]
Length = 739
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 247/552 (44%), Gaps = 123/552 (22%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C++G+KCKF HD ++K + ED++ QC ++ GYC +G CRF SH +E
Sbjct: 162 CRFGDKCKFEHDLRKYLKEGRREDLTTFDGQCPIYEVRGYCHLGWKCRFVGSHSEERATE 221
Query: 145 ------IVKEDVLKEWKNTVGN----KTVNMLANEVRQDLRKHTYNFEKSEKICKENKAS 194
+++ED ++ K + VN+L EVR L + +S++ + ++
Sbjct: 222 HGRQELVLREDAERKAKFAGLEDDEVEVVNILPKEVRFGLSRRKIGTPRSDQYLEWINSN 281
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
K++ ++ D N + +K + + + ++ + SEK++
Sbjct: 282 KDQERELFD----------------NNQGDTEALKEERDARRAEYVEA---PFRPSEKRR 322
Query: 255 IDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+ + + L+PLTT GN+P+RRLC G +T SEMA+ L++ EWAL+K HESE
Sbjct: 323 LYYGPETPVLAPLTTQGNMPYRRLCVDLGCQVTWSEMAMGMPLIQGERGEWALMKAHESE 382
Query: 314 --------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCP 351
D+ FG Q+ N P++ K ++L + + +D+N GCP
Sbjct: 383 IAAPRFQSKGTVVQGYDNAADIRFGAQIAANKPWLANKTVEVLTDNCPKLRAIDLNCGCP 442
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I + ++GSGS LL L G N YV + PI
Sbjct: 443 INLVCEKGSGSALLDSEAKLENILRGMN-YVSKE-------------------VPITVKV 482
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
+ G+ +++ ++ E + + K +G+ + I
Sbjct: 483 RMGTKDNHPTAQKLIKRLVLGGYEALA---SDKGTSGV-------------------AAI 520
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGR+++QRY+K ADW YI +CA L +R + K +D E
Sbjct: 521 TLHGRSKQQRYSKSADWSYIAECASLINR--------LKKEKDAQTDTAA------EADP 566
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
QA+ ++ GNGD S+EDY + + ++ VMIGRGALIKPWIF+
Sbjct: 567 RDQANGGHVY----------FVGNGDCYSHEDYYNHMNNA-NVDSVMIGRGALIKPWIFE 615
Query: 592 EIKEKKLFDIYA 603
EI++ + D A
Sbjct: 616 EIEKGQYLDKSA 627
>gi|453085972|gb|EMF14014.1| FMN-linked oxidoreductase [Mycosphaerella populorum SO2202]
Length = 725
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 165/574 (28%), Positives = 239/574 (41%), Gaps = 166/574 (28%)
Query: 88 TCKYGEKCKFVHDKNVFMK-SKPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDE-NG 142
TC +GEKC+ HD ++K K ED+ + C F G C G CR+ SH +E
Sbjct: 148 TCPFGEKCRMEHDIRKYVKEGKREDMQTFNGVCPNFETKGKCKEGWKCRWAGSHSEEIER 207
Query: 143 GNIVKEDVLKEWKNTV---------------GNKTVNMLANEVRQDLRKHTYNFEKSEKI 187
+ KE V K+ ++T N VN+++N + LRK + S+K
Sbjct: 208 DDGRKELVQKQKRDTAEQCAANDHGDDEEDQDNGVVNIVSNGDKITLRKKKWATPLSDKY 267
Query: 188 CK--ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDII 245
K ++ ++ N+ +D D+ S P L
Sbjct: 268 LKWLNSQVGEDGNRISDH----------------------DLNHDHRAAYSDPPL----- 300
Query: 246 KIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+ SEK++I + + L+PLTT GNLPFRRLC + GA +T SEMA+ LL EW
Sbjct: 301 --RPSEKRRIYYGPETPVLAPLTTQGNLPFRRLCTELGAQVTWSEMAMGLPLLNGEKGEW 358
Query: 305 ALIKRHESE-------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDF 343
AL+K HESE D+ FGVQ+ N P++ K T++L +
Sbjct: 359 ALVKAHESELAPPSYFPKNPVQGYDNSKDIRFGVQIAANKPWLAMKTTEVLAALCPQIRA 418
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
+D+N GCPI+ +++ G+GS LL
Sbjct: 419 IDLNCGCPIDLVFRTGAGSALL-------------------------------------- 440
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK 462
G G L++ ++ MN VS +PITVK R G + +
Sbjct: 441 -----------DGHGKLEK------ILRGMNTVSGEIPITVKIRMGTKDKQPTAQKLVER 483
Query: 463 F-------RD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMP 510
RD G + ITLHGR+R+QRYT+ ADW YI +CA L
Sbjct: 484 LVLGGNEARDANLGPAGVAAITLHGRSRQQRYTRDADWSYIAECATLVK----------- 532
Query: 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY-GNGDILSYEDYTESLK 569
H R + T A P + GNGDIL DY + +
Sbjct: 533 ------------HLRAQHADLTDTVREPDARDTANTKEGLPYFCGNGDILCPGDYNKHID 580
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
++ + +MIGRGAL+KPWIF+EI++ + D A
Sbjct: 581 EA-KVDSIMIGRGALVKPWIFEEIEKNQDLDKSA 613
>gi|391867317|gb|EIT76563.1| tRNA-dihydrouridine synthase 3 [Aspergillus oryzae 3.042]
Length = 730
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 180/637 (28%), Positives = 263/637 (41%), Gaps = 119/637 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA +K EFI+ + E TD E + ++ KK K+ GQN R
Sbjct: 63 GVAPVKPEFIIP---RATGTEPQPNTDD--AAEAARHEGAQGQEAGKKKKKKPTGQNTNR 117
Query: 65 GPTF-VTKPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF ++ E CP C++GEKC+F HD ++K K D++ C
Sbjct: 118 --TFGSSQDEKGLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLKEYKRGDLTTFDGVCP 175
Query: 118 VFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
V+ G C G CR SH+ E + KE VL E + K L +D
Sbjct: 176 VWDAKGKCLSGWKCRLLGSHMTERETADGRKELVLVE--DEERKKKAQPLVPFAVEDGTA 233
Query: 177 HTYNFEKSEKICKENKASKNENKDTD----DCCKNQDSKVIEGRE---EINTPNTDDVIK 229
+ E KI K K D D + KVI RE E + D +
Sbjct: 234 NIAPIEA--KIALNRKKVKTPRADAYGSWLDKTSRELEKVIHNREVHEERGAESKTDQAE 291
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
++E L+ + SEK++I + + L+PLTT GNLPFRRLC + GA T S
Sbjct: 292 REKEDNRAQYLEPPFLP---SEKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYS 348
Query: 289 EMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYV 327
EMA++ L++ EWAL++ HE+E L FG Q+ N +
Sbjct: 349 EMALSMPLIQGQRGEWALMRAHETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQ 408
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 409 ALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKLERILRGMN------- 461
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G+ + + +I E S+L +
Sbjct: 462 -------------AVSQEIPITAKIRMGTRDNSPNALKLAERLILGGYESSTLGLGAP-- 506
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + +TLHGR+R+QRYT+QADW YI +CA L R N
Sbjct: 507 --------------------GVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTD 546
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
R+ G+T W GNGD S+ DY +
Sbjct: 547 QVTDTVREPDPRTQPNGGKT----------W--------------FLGNGDCYSHLDYDD 582
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 583 HVNNA-GVDTVMVGRGALIKPWLFEEIQAGQYLDKSA 618
>gi|145230842|ref|XP_001389685.1| tRNA-dihydrouridine synthase 3 [Aspergillus niger CBS 513.88]
gi|187471046|sp|A2QAU6.1|DUS3_ASPNC RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|134055808|emb|CAK37330.1| unnamed protein product [Aspergillus niger]
Length = 748
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 188/674 (27%), Positives = 280/674 (41%), Gaps = 180/674 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK EFI++ + DG A ++ K K+ GQN R
Sbjct: 69 GVAPIKPEFIIDQQP---TRGQTASDANADDAAEAAHHDGRADEQNGKKKKKKTGQNTNR 125
Query: 65 GPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QC 116
TF + ED C + C +GEKC++ HD ++K K ED++ C
Sbjct: 126 --TF-GRSEDAKGLCSSVNFRPEFSPAECTFGEKCRYEHDLRTYLKEHKREDLTTFNGMC 182
Query: 117 YVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVL---KEWKNTVG--------NKTVN 164
V+ HG C +G CRF SH +E + KE VL +E K V + VN
Sbjct: 183 PVWDVHGKCFVGWKCRFVGSHSEERETADGRKELVLIEDEERKKKVQRLVPFAGEDGAVN 242
Query: 165 MLANEVRQDLRKHTYNFEKS---------------EKICKENKASKNENKDTDDCCKNQD 209
+ + E + L + +F ++ +++ K ++A+ + D K+ +
Sbjct: 243 VASMEDKIALARRKMDFPRAGPYSAWLENTSRTIEKELHKRHRAAPVGAETKDGESKDAE 302
Query: 210 SKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTT 268
SK + ++E +EE ++ V SEK+++ + + L+PLTT
Sbjct: 303 SKDADSKDE------------KEENRAMYVEPP----FMPSEKRRLYFGPETPALAPLTT 346
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------- 315
GN+PFRRLC + GA T SEMA++ L++ + EWAL++ HESE L
Sbjct: 347 QGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALMRAHESEMLPPTMLPGADIVQG 406
Query: 316 --------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQ 366
FG Q+ N P+ K T+ L + + +D+N GCPI+ ++K G+GS LL+
Sbjct: 407 YDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVIDLNCGCPIDLVFKDGAGSALLE 466
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+P L K
Sbjct: 467 ------------HPSKLEK----------------------------------------- 473
Query: 427 QSVITCMNEVS-SLPITVKTRTGIHKDNN-----IIHNFMPKFRDWGASL---------- 470
+I MN VS +PITVK R G KDNN + + + SL
Sbjct: 474 --IIRGMNTVSDQIPITVKIRMGT-KDNNPNALKLTERLL--LGGYETSLLHHDGAAGAA 528
Query: 471 -ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYT+QADW+YI +CA L R N R+ A G+
Sbjct: 529 AITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDAVTDTIREPDARTQPNGGKVY-- 586
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD S+ DY + + + VM+GRG LIKPW+
Sbjct: 587 ----------------------FLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLIKPWL 623
Query: 590 FQEIKEKKLFDIYA 603
F+EI+ + D A
Sbjct: 624 FEEIQAGQYLDKSA 637
>gi|350638673|gb|EHA27029.1| hypothetical protein ASPNIDRAFT_46331 [Aspergillus niger ATCC 1015]
Length = 742
Score = 181 bits (460), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 188/674 (27%), Positives = 280/674 (41%), Gaps = 180/674 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK EFI++ + DG A ++ K K+ GQN R
Sbjct: 63 GVAPIKPEFIIDQQP---TRGQTASDANADDAAEAAHHDGRADEQNGKKKKKKTGQNTNR 119
Query: 65 GPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QC 116
TF + ED C + C +GEKC++ HD ++K K ED++ C
Sbjct: 120 --TF-GRSEDAKGLCSSVNFRPEFSPAECTFGEKCRYEHDLRTYLKEHKREDLTTFNGMC 176
Query: 117 YVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVL---KEWKNTVG--------NKTVN 164
V+ HG C +G CRF SH +E + KE VL +E K V + VN
Sbjct: 177 PVWDVHGKCFVGWKCRFVGSHSEERETADGRKELVLIEDEERKKKVQRLVPFAGEDGAVN 236
Query: 165 MLANEVRQDLRKHTYNFEKS---------------EKICKENKASKNENKDTDDCCKNQD 209
+ + E + L + +F ++ +++ K ++A+ + D K+ +
Sbjct: 237 VASMEDKIALARRKMDFPRAGPYSAWLENTSRTIEKELHKRHRAAPVGAETKDGESKDAE 296
Query: 210 SKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTT 268
SK + ++E +EE ++ V SEK+++ + + L+PLTT
Sbjct: 297 SKDADSKDE------------KEENRAMYVEPP----FMPSEKRRLYFGPETPALAPLTT 340
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------- 315
GN+PFRRLC + GA T SEMA++ L++ + EWAL++ HESE L
Sbjct: 341 QGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALMRAHESEMLPPTMLPGADIVQG 400
Query: 316 --------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQ 366
FG Q+ N P+ K T+ L + + +D+N GCPI+ ++K G+GS LL+
Sbjct: 401 YDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVIDLNCGCPIDLVFKDGAGSALLE 460
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+P L K
Sbjct: 461 ------------HPSKLEK----------------------------------------- 467
Query: 427 QSVITCMNEVS-SLPITVKTRTGIHKDNN-----IIHNFMPKFRDWGASL---------- 470
+I MN VS +PITVK R G KDNN + + + SL
Sbjct: 468 --IIRGMNTVSDQIPITVKIRMGT-KDNNPNALKLTERLL--LGGYETSLLHHDGAAGAA 522
Query: 471 -ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYT+QADW+YI +CA L R N R+ A G+
Sbjct: 523 AITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDAVTDTIREPDARTQPNGGKVY-- 580
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD S+ DY + + + VM+GRG LIKPW+
Sbjct: 581 ----------------------FLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLIKPWL 617
Query: 590 FQEIKEKKLFDIYA 603
F+EI+ + D A
Sbjct: 618 FEEIQAGQYLDKSA 631
>gi|296808361|ref|XP_002844519.1| tRNA-dihydrouridine synthase 3 [Arthroderma otae CBS 113480]
gi|238844002|gb|EEQ33664.1| tRNA-dihydrouridine synthase 3 [Arthroderma otae CBS 113480]
Length = 737
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 161/572 (28%), Positives = 243/572 (42%), Gaps = 138/572 (24%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDENG 142
+ C+YG+ CKF H+ ++K K ED+ C V+ G C G CRF SH+ E
Sbjct: 131 RPCQYGDNCKFEHNLRKYLKEHKKEDLKTFGGICPVWEAFGVCSAGWRCRFVGSHMAERE 190
Query: 143 -GNIVKEDVLKEWK----------------NTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
+ KE VL E + N VN+++ E +Q + + + K++
Sbjct: 191 LEDGRKELVLVEDEEKKKKAAPASAATSSINATELGVVNLVSTENKQLMTRKKFLTPKAD 250
Query: 186 ----------KICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK 235
K +E +N D D + K G+ E N + EE K
Sbjct: 251 AFNDWITVTSKELEERFHGRNFEDDED-----TEGKDTNGKAEGNGEGESEAKASSEENK 305
Query: 236 S----GPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEM 290
+ P L SEK+++ + + L+PLTT GNLPFRRLC + GA T SEM
Sbjct: 306 ARYTEPPFLP--------SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVELGAQFTYSEM 357
Query: 291 AVATELLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLT 329
A++ L++ + EWAL+K HESE DL FG Q+ GN P+
Sbjct: 358 AMSLPLMQGTKGEWALMKAHESEIQPPTISPKQPVVKGYDNSRDLKFGAQIAGNRPWQAL 417
Query: 330 KCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQ 388
K T++L + VD+N GCPI+ +Y+ G+GS LL+ +
Sbjct: 418 KATEILTALCPHLRVVDLNCGCPIDLVYRDGAGSALLEHPSKL----------------- 460
Query: 389 LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448
E+++ V+ PI + G T N ++L + + G
Sbjct: 461 ---EKILRGMNSVSGEVPITAKIRMG----------------TKDNYPTALKLAERLVIG 501
Query: 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNF 508
++ N + G +TLHGR+R+QRYT++ADW YI +C+ L R N
Sbjct: 502 GYESNELGQGPA------GIGALTLHGRSRQQRYTREADWGYISECSALVKRLNVKRDEV 555
Query: 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
+ R+ L+ G+ GNGD S+ DY ++
Sbjct: 556 VDTVREPDERLLPSAGKVY------------------------FIGNGDCYSHADYNNAI 591
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
S + VM+ RGALIKPWIF+EI+ + D
Sbjct: 592 TNS-GVDSVMVARGALIKPWIFEEIQAGQYLD 622
>gi|387194104|gb|AFJ68744.1| hypothetical protein NGATSA_3021200, partial [Nannochloropsis
gaditana CCMP526]
Length = 381
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 122/354 (34%), Positives = 173/354 (48%), Gaps = 97/354 (27%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+Y++PLTTVGNLPFRR+ K GADITC EMA+A +L E AL++RH SED+FG+QL
Sbjct: 1 VYIAPLTTVGNLPFRRVMKTMGADITCGEMALAGNILAGQKSETALLRRHPSEDVFGIQL 60
Query: 321 CGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G + +LT+ ++LL E + +DF+D+NLGCP++ + QG G+ L+ R++ +L G
Sbjct: 61 AGAHADMLTRTSELLVREGIQMDFIDLNLGCPLDLVNNQGMGAALMCRSS----KLRG-- 114
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
+L+ + +L Y G SS
Sbjct: 115 --ILSGMSSVLRH------------------YHPAEGGA---------------RRFSSF 139
Query: 440 --PITVKTRTGIHKDNNIIHNFMPKFRDWGA------SLITLHGRTREQRYTKQADWDYI 491
P+T+K RTG H +P+ + W A I +HGR+R+QRYTK+A+WDY
Sbjct: 140 APPLTLKMRTGWDDKKPTAHYLVPQVQQWAADGACDVGAIFIHGRSRQQRYTKKANWDY- 198
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
IHN +TL + L S P
Sbjct: 199 -------------IHN------------VTL------------------AQDPALPS-LP 214
Query: 552 LYGNGDILSYEDYTESLKKSPSISG--VMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ GNGDILSY ++ P M+GRGALIKPW+ EIKE++ +DI A
Sbjct: 215 IIGNGDILSYTEFQAHQTSYPDTLTPCAMLGRGALIKPWLPTEIKEQRHWDISA 268
>gi|156054034|ref|XP_001592943.1| hypothetical protein SS1G_05865 [Sclerotinia sclerotiorum 1980]
gi|187471050|sp|A7EKL8.1|DUS3_SCLS1 RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|154703645|gb|EDO03384.1| hypothetical protein SS1G_05865 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 750
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 159/554 (28%), Positives = 247/554 (44%), Gaps = 123/554 (22%)
Query: 89 CKYGEKCKFVHD-KNVFMKSKPEDIS---EQCYVFLQHGYCPMGIACRFGSSHLDE---N 141
C +GE CK HD + + K D++ +C V+ +G C G CRF SH E
Sbjct: 169 CSFGESCKCEHDLRKYLAEGKRGDLTTFNSKCPVWEDNGTCLAGWKCRFVGSHSKEVKRE 228
Query: 142 GGN---IVKEDVLKEWKNTVGNK-----TVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
G ++ ED+ + G++ VN+++ + + DL + EKS+ N
Sbjct: 229 DGRMELVLIEDLERMRTTVAGDEEALGGVVNVVSTKDKLDLARRRTKMEKSDLYT--NWL 286
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
KN + +D K + +EE +EE ++ V + SEK+
Sbjct: 287 DKNSEEVNRQSNLRKDQKNDQTQEE------------KEENRARYVEPPFLP----SEKR 330
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
+I + + L+PLTT GNLPFRRLC + GA +T SEMA++ L + EWAL+K HES
Sbjct: 331 RIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLFQGQKSEWALMKAHES 390
Query: 313 E---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLG 349
E DL FG Q+ N P+ K ++L + + +D+N G
Sbjct: 391 EITPPRINPDRSSIVQNYNNSKDLKFGTQISANKPFQAIKAAEILSRFVPHLRVIDLNCG 450
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPIE +Y+QG+GS LL + P L E+M+ V+ PI
Sbjct: 451 CPIELVYRQGAGSALL------------DAPSKL--------EKMIRGMNAVSGEVPITA 490
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+ G+ +G + + + ++ + + R G G +
Sbjct: 491 KIRMGTMTG-------KPTALKTIERLAFGGVESRERLGAP----------------GCA 527
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYTK ADW YI +CA L + ++ K D +++ RT
Sbjct: 528 AITLHGRSRQQRYTKNADWSYIAECAAL-------VKSYNQKKDDLTDTIMEPDARTLPN 580
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
+I GNGD S+ DY + ++ + S+ VM+ RGALIKPW+
Sbjct: 581 --APDGKLHFI-------------GNGDCYSHVDYLDHIQNA-SVDSVMVARGALIKPWL 624
Query: 590 FQEIKEKKLFDIYA 603
F+EI++ + D A
Sbjct: 625 FEEIEKGQTLDKSA 638
>gi|340517054|gb|EGR47300.1| hypothetical protein TRIREDRAFT_109015 [Trichoderma reesei QM6a]
Length = 763
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 162/571 (28%), Positives = 238/571 (41%), Gaps = 140/571 (24%)
Query: 89 CKYGEKCKFVHDKNVFM-KSKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDE-NGG 143
C+YG+ CK HD ++ + + ED+ +C F +GYC G CRF SH+ E
Sbjct: 161 CRYGDSCKMCHDLRKYLSEGRREDVEALGGKCPAFEAYGYCASGWKCRFVKSHMQEIEHA 220
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
+ KE VL + + K A + ++D E+ +E S++E +
Sbjct: 221 DGRKELVLSDNRPP---KAEPKEAPKPKEDESAEPEASEEKGPNTEERAKSEDELRPDIY 277
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIK-----------VQEETKSGPVLDTDIIK------ 246
K+ R+ ++ D I+ K P + + ++
Sbjct: 278 NVVTMGQKIQLNRKRLDFTKADQYIQWLNHEGGISQDFHHRRKDQPAMGLEDLRARFVDP 337
Query: 247 -IKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
K SEK+++ + + L+PLTT GNLPFRRLC + G T SEMA+ LL+ S +W
Sbjct: 338 PFKPSEKRRLYFGPETPTLAPLTTQGNLPFRRLCVELGCQATYSEMALGMPLLQGSKPDW 397
Query: 305 ALIKRHESE---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-V 341
L++ H+SE DL FG Q+ G+ +V+TK +L +
Sbjct: 398 TLMRAHKSEITPPKMNPGAIPLFDDYDNSRDLKFGAQISGSAHWVVTKAADVLNRYCPHL 457
Query: 342 DFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV 401
+D+N GCPI+ ++K G+GS LL+
Sbjct: 458 RLIDLNCGCPIDKVFKGGAGSALLE----------------------------------- 482
Query: 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKD----NNII 456
SG L+R +I MN VS +PIT K RTG+ KD II
Sbjct: 483 --------------ASGKLER------MIRGMNAVSGEIPITAKIRTGVRKDRPTATQII 522
Query: 457 HNFMPKFRDW-------GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFM 509
R+ G + +TLHGR+REQRYTK ADW YI +CA L
Sbjct: 523 GKLAFGAREHRERLGAPGCAALTLHGRSREQRYTKTADWGYIGECAALIK---------- 572
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
+ + A + E D GNGD S+ DY E +
Sbjct: 573 -TYNEEKAKVTDTIAEPDESTLPNAKDGRMY-----------FLGNGDCFSHVDYYEHID 620
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ + VMIGRGALIKPWIF+EI++ + D
Sbjct: 621 NA-RVDTVMIGRGALIKPWIFEEIEKGQYLD 650
>gi|296421752|ref|XP_002840428.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636644|emb|CAZ84619.1| unnamed protein product [Tuber melanosporum]
Length = 707
Score = 180 bits (456), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 239/539 (44%), Gaps = 141/539 (26%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHL--DENGGNIV---- 146
+KC F H+ ++KSK +D C V+ GYC G CR+ SH DENG +
Sbjct: 171 KKCGFSHNLREYLKSKRDDSEGVCPVWELRGYCGSGWRCRWVGSHSKEDENGELYMVVDE 230
Query: 147 -KEDVLKEWKNTVG--------NKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNE 197
K+ + ++W+ V + +N + ++ LRK+ + +KSE + +++
Sbjct: 231 GKKKIPQQWEEEVPIGGFYDPYGEIINSVPMSLKIRLRKNEFPTKKSEVYAE----WEHK 286
Query: 198 NKDTDDCCKNQDSKVIEGREE-INTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKID 256
K T D +D + R ++ P + +EK++I
Sbjct: 287 EKTTRDGLGYEDKG--DARASFVDAP------------------------VNAAEKRRI- 319
Query: 257 WQGK--LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE- 313
+ GK L+PLTT GNLPFRRLC + GA +T SEMA++ LL+ EWAL++ H SE
Sbjct: 320 YIGKETPLLAPLTTTGNLPFRRLCSRLGAALTYSEMAMSVPLLQGHKPEWALLRAHASEI 379
Query: 314 DLFGVQLCGNNPYVLTKCTQLL--------EEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
FG Q+CG + T++L + + VD+N GCPI+ +Y+QG GS LL
Sbjct: 380 PNFGAQICGTKIGTAVRATEVLTTLFPSAASSRHGLSLVDLNCGCPIDLVYRQGGGSALL 439
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+ + L G N YV SG
Sbjct: 440 DQPSKLIKMLKGMN-YV--------------------------------SG--------- 457
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWG-ASLITLHGRTREQRYTK 484
++ ITC K R G + + + + D G ITLHGR+R+QRY++
Sbjct: 458 -ETPITC-----------KIRLGTRDSSPVAKKLVQRIYDAGDVQAITLHGRSRQQRYSR 505
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YI + A L I +F ++R AD I+K A
Sbjct: 506 DADWTYIAETAAL-------IKDF-------------------KRRSDTTAD-TAIDKEA 538
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ GNGD S+ DY S+ + ++ GVM+ RGALIKPW+F+EI++ + D A
Sbjct: 539 RDKPNVFFVGNGDCYSHVDYYNSIDQG-NVDGVMLARGALIKPWLFEEIQKGQYLDKSA 596
>gi|221486656|gb|EEE24917.1| tRNA-dihydrouridine synthase, putative [Toxoplasma gondii GT1]
Length = 1220
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 156/346 (45%), Gaps = 105/346 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L L+PLTTVGNLPFRRLC + GA++T SEMAVA ++ E +L+KRH+SE FGVQ
Sbjct: 820 RLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIVDGKQSELSLLKRHKSETFFGVQ 879
Query: 320 LCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
+ G P VL CT +L E ++ DF+D+N CP+ ++++ F C
Sbjct: 880 IAGGTPEVLNACTDILASEDVSCDFIDLNAACPLVQLHRR------------FKAGAC-- 925
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM-NEVS 437
+L L+S++ M
Sbjct: 926 ----------------------------------------MLDHPKRLESLVESMTTRHP 945
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK RT ++H+F+ + D GA+ + +HGRT +QRYTK ADW Y+ +C +
Sbjct: 946 EVPVTVKLRTANQGKKQVLHSFIRRLGDAGAAALIVHGRTAQQRYTKAADWSYVAQCREA 1005
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
L S PL G GD
Sbjct: 1006 ------------------------------------------------LDSSTPLIGCGD 1017
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
I S ++ L S G+MI R AL+KPW+F EI E+K++DI A
Sbjct: 1018 IFSSPEFEFRLASGAS-DGLMIARAALVKPWVFTEISERKVWDISA 1062
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 95 CKFVHDKNVFMKSKPEDISEQCYVFLQHGY--CPMGIACRFGSSHLDENGGNI 145
C+ HD F+K++PEDI + F G+ CP G CRFG+ H+D G N+
Sbjct: 614 CRRPHDLKAFLKTRPEDIQTRSCPFFDAGFPLCPFGACCRFGACHIDAEGFNL 666
>gi|237834267|ref|XP_002366431.1| hypothetical protein TGME49_028080 [Toxoplasma gondii ME49]
gi|211964095|gb|EEA99290.1| hypothetical protein TGME49_028080 [Toxoplasma gondii ME49]
Length = 1220
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 156/346 (45%), Gaps = 105/346 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L L+PLTTVGNLPFRRLC + GA++T SEMAVA ++ E +L+KRH+SE FGVQ
Sbjct: 820 RLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIVDGKQSELSLLKRHKSETFFGVQ 879
Query: 320 LCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
+ G P VL CT +L E ++ DF+D+N CP+ ++++ F C
Sbjct: 880 IAGGTPEVLNACTDILASEDVSCDFIDLNAACPLVQLHRR------------FKAGAC-- 925
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM-NEVS 437
+L L+S++ M
Sbjct: 926 ----------------------------------------MLDHPKRLESLVESMTTRHP 945
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK RT ++H+F+ + D GA+ + +HGRT +QRYTK ADW Y+ +C +
Sbjct: 946 EVPVTVKLRTANQGKKQVLHSFIRRLGDAGAAALIVHGRTAQQRYTKAADWSYVAQCRE- 1004
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
L S PL G GD
Sbjct: 1005 -----------------------------------------------ALDSSTPLIGCGD 1017
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
I S ++ L S G+MI R AL+KPW+F EI E+K++DI A
Sbjct: 1018 IFSSPEFEFRLASGAS-DGLMIARAALVKPWVFTEISERKVWDISA 1062
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 95 CKFVHDKNVFMKSKPEDISEQCYVFLQHGY--CPMGIACRFGSSHLDENGGNI 145
C+ HD F+K++PEDI + F G+ CP G CRFG+ H+D G N+
Sbjct: 614 CRRPHDLKAFLKTRPEDIQTRSCPFFDAGFPLCPFGACCRFGACHIDAEGFNL 666
>gi|221508413|gb|EEE34000.1| tRNA-dihydrouridine synthase, putative [Toxoplasma gondii VEG]
Length = 1220
Score = 179 bits (454), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 156/346 (45%), Gaps = 105/346 (30%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L L+PLTTVGNLPFRRLC + GA++T SEMAVA ++ E +L+KRH+SE FGVQ
Sbjct: 820 RLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIVDGKQSELSLLKRHKSETFFGVQ 879
Query: 320 LCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
+ G P VL CT +L E ++ DF+D+N CP+ ++++ F C
Sbjct: 880 IAGGTPEVLNACTDILASEDVSCDFIDLNAACPLVQLHRR------------FKAGAC-- 925
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM-NEVS 437
+L L+S++ M
Sbjct: 926 ----------------------------------------MLDHPKRLESLVESMTTRHP 945
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK RT ++H+F+ + D GA+ + +HGRT +QRYTK ADW Y+ +C +
Sbjct: 946 EVPVTVKLRTANQGKKQVLHSFIRRLGDAGAAALIVHGRTAQQRYTKAADWSYVAQCRE- 1004
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
L S PL G GD
Sbjct: 1005 -----------------------------------------------ALDSSTPLIGCGD 1017
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
I S ++ L S G+MI R AL+KPW+F EI E+K++DI A
Sbjct: 1018 IFSSPEFEFRLASGAS-DGLMIARAALVKPWVFTEISERKVWDISA 1062
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 95 CKFVHDKNVFMKSKPEDISEQCYVFLQHGY--CPMGIACRFGSSHLDENGGNI 145
C+ HD F+K++PEDI + F G+ CP G CRFG+ H+D G N+
Sbjct: 614 CRRPHDLKAFLKTRPEDIQTRSCPFFDAGFPLCPFGACCRFGACHIDAEGFNL 666
>gi|171695442|ref|XP_001912645.1| hypothetical protein [Podospora anserina S mat+]
gi|170947963|emb|CAP60127.1| unnamed protein product [Podospora anserina S mat+]
Length = 769
Score = 179 bits (453), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 152/558 (27%), Positives = 235/558 (42%), Gaps = 135/558 (24%)
Query: 87 QTCKYGEKCKFVHDKNVFMK----SKPEDISEQCYVFLQHGYCPMGIACRFGSSH----- 137
++CK+GE+C +HD ++K + E +C + G CP G C F SSH
Sbjct: 145 RSCKFGERCNGLHDIRKYLKEGRRADLETFGGKCPTLEKFGKCPSGWRCLFVSSHSKEVE 204
Query: 138 ---------LDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKIC 188
L + GN +D NT + VN + +++ DL + FEKS+K
Sbjct: 205 HEDGRKELVLTDKDGNTYPDDGDTGDANT---EVVNNVEGQIKIDLSRKRVQFEKSDKYL 261
Query: 189 KENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIK 248
+ + +D K+ ++ ++ R P K
Sbjct: 262 RWLEKDTQIFRDHHHKQKDGGAEALDYRAMYAEP-----------------------PFK 298
Query: 249 NSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
SEKK++ + + L+PLTT GNLPFRRLC G ++T SEMA+ LL+ + +W L+
Sbjct: 299 PSEKKRLYFGRETPALAPLTTQGNLPFRRLCVDLGCELTYSEMAMGMPLLQGAKSDWTLM 358
Query: 308 KRHESE--------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVD 345
+ H+SE DL FG Q+ N P+V K T+ L + + +D
Sbjct: 359 RAHKSETTPPRFNGDGPVAQGYDNSKDLKFGAQIAANVPWVAIKSTEALARFLPHLRLID 418
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N GCPI+ +YK G+GS LL + P L E+M+ V+
Sbjct: 419 LNCGCPIDMLYKSGAGSALL------------DAPSKL--------ERMIRGMNAVSDDV 458
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
PI + G + T + L + G + +I+ P
Sbjct: 459 PITAKIRMG----------VRDDKFTAQKNIERLAL------GSEEHRDILG--AP---- 496
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
G + +TLHGRTR+QRYT+ A+W+YI + A + R N + R+ + GR
Sbjct: 497 -GCAAVTLHGRTRQQRYTRAANWEYIAETAAMIKRLNEKTDSLTDTIREVDERTLPNGGR 555
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
GNGD S+ DY + + + + VMIGRGA+I
Sbjct: 556 MF------------------------FIGNGDCYSHIDYFDHVDNT-KVDTVMIGRGAII 590
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPWI++EI+ + D A
Sbjct: 591 KPWIYEEIQTGQYLDKSA 608
>gi|440638572|gb|ELR08491.1| hypothetical protein GMDG_00555 [Geomyces destructans 20631-21]
Length = 735
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 177/628 (28%), Positives = 280/628 (44%), Gaps = 118/628 (18%)
Query: 5 GVAKIKQEFIVEDHVK--VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA IK E+++ K S + D+ + ++ V+D KK K+ +GQN
Sbjct: 78 GVAMIKAEYLIHRPAKEATPSEPAAAQDDEAEGKKYAVDDRDNRDGGDKKKKKKERGQNT 137
Query: 63 ARGPTFVTKPEDC-YCPFLKDST--LEQTCKYGEKCKFVHD-KNVFMKSKPEDI---SEQ 115
+R F + + C + +S+ + C +GE+C HD +N + K ED+ S +
Sbjct: 138 SR--NFGSSNDFIKLCNSVANSSEFSPKPCSFGERCNLSHDLRNYLKEGKREDLITFSGK 195
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
C V+ +G C G CRF SSH+++ I +ED KE T+ E ++
Sbjct: 196 CPVWEVNGRCYAGWKCRFVSSHMEK----IEREDGRKELVLTIDPARATAAELEDEENRA 251
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK 235
++K+ + K D + +++K E +T+D
Sbjct: 252 GVANIVSTADKLDLARRRFKTVRSDQYNAWLEKETKASEIFHNQKKGDTED--------H 303
Query: 236 SGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
+D + SEK+++ + + L+PLTT GNLPFRRLC + GA+IT SEMA++
Sbjct: 304 RAQFVDP---PFRASEKRRLYYGPETPVLAPLTTQGNLPFRRLCVELGAEITYSEMAMSE 360
Query: 295 ELLKSSPQEWALIKRHESE-------------------DL-FGVQLCGNNPYVLTKCTQL 334
++K EWAL+K HESE DL FGVQ+ + P++ K T+
Sbjct: 361 SIIKGGKGEWALMKAHESELTPPKYTPTSTVHNYDNAKDLKFGVQISSSKPWMAFKATEA 420
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPIE +Y+ G+GSGLL + P L E+
Sbjct: 421 LVTLVPNLRSIDLNCGCPIELVYQTGAGSGLL------------DAPSKL--------EK 460
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
M+ V+L P+ + G+ R N + T + ++ + + R G
Sbjct: 461 MIRGMNAVSLDVPVTAKIRMGT------RDNKPTATKT-IERLAFGGLESRDRLGPP--- 510
Query: 454 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFR 513
G + ITLHGR+R+QRYTK ADW YI +CA
Sbjct: 511 -------------GCAAITLHGRSRQQRYTKSADWSYIAECA------------------ 539
Query: 514 DWGASLITLHGRTREQRYT-KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
A + + H + E T + D + +L GNGD S+ DY + ++
Sbjct: 540 ---AQIKSYHKKKDELTDTINEPDARDLPNGEKLY----FIGNGDCYSHVDYFDHVQNG- 591
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ VM+ RGALIKPW+F+EI+ + D
Sbjct: 592 GVDSVMLARGALIKPWLFEEIQAGQYID 619
>gi|167394491|ref|XP_001740985.1| tRNA-dihydrouridine synthase [Entamoeba dispar SAW760]
gi|165894630|gb|EDR22551.1| tRNA-dihydrouridine synthase, putative [Entamoeba dispar SAW760]
Length = 515
Score = 178 bits (451), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 137/509 (26%), Positives = 215/509 (42%), Gaps = 172/509 (33%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLK 152
E CK+ HD ++ + + + C ++ ++G+CP G C + SH +E G I +++K
Sbjct: 67 ENCKYSHDLKEYLSKRTDLLEGICPLYKEYGFCPNGYTCGWYKSHTNEQGELITNNELMK 126
Query: 153 EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV 212
+ +N E LR + + F
Sbjct: 127 LHP---FKEPLNTQKPETLHVLRTNKFEF------------------------------- 152
Query: 213 IEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
K+ EE PV + I+ +K GKL L L T GNL
Sbjct: 153 ----------------KIPEEF---PVPEKKILDLK----------GKLILPSLCTFGNL 183
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFR+ K++G D+T +EM +A L++ EWAL+KR SED+FG+QLC N + K
Sbjct: 184 PFRKAVKRFGCDVTMTEMIMAESLVEGKTSEWALVKRDPSEDIFGIQLCVGNSLLAAKAC 243
Query: 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEE 392
Q+L + DF ++N CPI+++YK+G G+ L++R L + + T+
Sbjct: 244 QVL-NSVDCDFYELNCACPIDYVYKKGMGAQLIERPKRIESLL-----HAMRSVTER--- 294
Query: 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452
P+ + G S N +Q V+
Sbjct: 295 -------------PVAIKVRTGKSS------NTIQDVL---------------------- 313
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+P ++GA+++++HGRTR+QRYTK ADWD+I++
Sbjct: 314 -------LPNCANYGAAMVSIHGRTRDQRYTKSADWDFIKQ------------------- 347
Query: 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSP 572
A+ IT +C P+ G GDI Y+DY ++L+
Sbjct: 348 ----ATTIT--------------------QC-------PVIGVGDIYGYKDYQKALE--C 374
Query: 573 SISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ V IGRGALIKPWI+ EIKEK+ +DI
Sbjct: 375 GVATVAIGRGALIKPWIYTEIKEKRDWDI 403
>gi|68491772|ref|XP_710328.1| possible tRNA dihydrouridine synthase fragment [Candida albicans
SC5314]
gi|68491789|ref|XP_710320.1| possible tRNA dihydrouridine synthase fragment [Candida albicans
SC5314]
gi|46431504|gb|EAK91057.1| possible tRNA dihydrouridine synthase fragment [Candida albicans
SC5314]
gi|46431513|gb|EAK91065.1| possible tRNA dihydrouridine synthase fragment [Candida albicans
SC5314]
Length = 487
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 152/494 (30%), Positives = 227/494 (45%), Gaps = 103/494 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED-DGTAKKKFKKNKQVLKGQNKA 63
GVA IK E++V S+ V D +E E D +G +K + NK+ KGQN
Sbjct: 85 GVAAIKAEYLVP----TSSLTVVEYDD----DEAEGGDREGESKPR---NKKKQKGQNHK 133
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + + +D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF
Sbjct: 134 RD---LKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFE 190
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
GYCP GI CR+ SH + ++K+ D ++ K T N VN + + + +++K Y
Sbjct: 191 ALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKY 248
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
F+ S+ + K DS++ N ++ K +EE K
Sbjct: 249 FFKISQPVIKY-----------------LDSRI---------QNEANLAKQKEERKDNEA 282
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
+ +EKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 283 SYVEA-PFTIAEKKKLYLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQG 341
Query: 300 SPQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
EWAL K H SE FGVQ+ + + + V +++N GCPI+ +YK
Sbjct: 342 HNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYK 401
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
QG GS LL + + L G M D+ + I K+G
Sbjct: 402 QGQGSALLDQPSKLLRILSG----------------MNASSGDIPVTVKIRTGIKEGKN- 444
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
T +N VS + + A+ ITLHGR+
Sbjct: 445 -------------TAVNLVSRV-----------------------LEEGNAAAITLHGRS 468
Query: 478 REQRYTKQADWDYI 491
R+QRY+K+ADW+YI
Sbjct: 469 RQQRYSKEADWNYI 482
>gi|361125353|gb|EHK97399.1| putative tRNA-dihydrouridine synthase 3 [Glarea lozoyensis 74030]
Length = 687
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 162/551 (29%), Positives = 245/551 (44%), Gaps = 124/551 (22%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDE-NGG 143
C++G KC+ HD +++ K ED++ +C V+ +G C G CRF SH E
Sbjct: 182 CQFGAKCRMSHDLREYLREGKSEDLTTFNGKCPVWEVNGKCHAGWKCRFVGSHSKEVERE 241
Query: 144 NIVKEDVLKEWKNTV----GNK-----TVNMLANEVRQDLRKHTYNFEKSEKICKENKAS 194
+ KE VL E +N + GN N+++ + + DL + EK+++ K +A
Sbjct: 242 DGRKELVLIENENLIEPQDGNDENRKGIFNIISTKDKLDLSRKRTVTEKADQYTKWMEA- 300
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
D + Q KV + R+E N D Q E ++ + SEK++
Sbjct: 301 --------DAAQMQ--KVYQARKE----NLAD----QREENRAQYIEPPFLP---SEKRR 339
Query: 255 IDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
I + + L+PLTT GNLPFRR+C + GA +T SEMA+ L++ EWAL+K HESE
Sbjct: 340 IYFGPETPVLAPLTTQGNLPFRRMCVELGAQLTYSEMAMTLPLIQGQKSEWALMKAHESE 399
Query: 314 -------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPI 352
DL FG Q+ N + K ++++ + + +D+N GCPI
Sbjct: 400 ISPPKYNPTSIVQNYDNSKDLKFGAQVSANKAWAALKAAEVMQRYIPHLRLIDLNCGCPI 459
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ +YK G+GS LL L+K E+MV V+ PI +
Sbjct: 460 DLVYKSGAGSALLDS---------------LSKL-----EKMVRGMNAVSGEVPITAKIR 499
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472
G+ + + T + L GI + I G + IT
Sbjct: 500 MGT----------MTAKPTAQKTIERLAF-----GGIETADRIGAP--------GCAAIT 536
Query: 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532
LHGR+R+QRYTK ADW YI +C+ L + N R+ A TL + Y
Sbjct: 537 LHGRSRQQRYTKNADWSYIAECSALIASYNKKKDEITDTVREPDAR--TLSNSADGKLY- 593
Query: 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
GNGD S+ Y +S++ + + VMI RGALIKPW+F+E
Sbjct: 594 -------------------FIGNGDCYSHVQYLDSVQNA-GVDSVMIARGALIKPWLFEE 633
Query: 593 IKEKKLFDIYA 603
I++ + D A
Sbjct: 634 IEKGQYLDKSA 644
>gi|189196893|ref|XP_001934784.1| tRNA-dihydrouridine synthase B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187980732|gb|EDU47358.1| tRNA-dihydrouridine synthase B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 643
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/550 (26%), Positives = 245/550 (44%), Gaps = 124/550 (22%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +GEKCKF HD ++K + D++ QC V+ G+C G CRF SH +E
Sbjct: 93 CPFGEKCKFEHDLRRYLKEGRRADLTTLNGQCPVYSVKGFCHFGWKCRFVGSHSEERTTE 152
Query: 145 ------IVKEDVLKEWK-----NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
++KED ++ K + + VN+++ +++ L + +S++ + +
Sbjct: 153 DGRQELVLKEDAERKAKLSGLDDEAEAEVVNVVSKDIKIGLSRRKIGTPRSDQYLEWIET 212
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
+ ++ D +++T +++K ++E + ++ + SEK+
Sbjct: 213 NARNEREMFDAA------------QMDT----EILKEEKEARRAEYVEA---PFRPSEKR 253
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
++ + + L+PLTT GN+P+RRLC +G +T SEMA+ L++ EW L+K HES
Sbjct: 254 RLYYGPETPMLAPLTTQGNMPYRRLCVDFGCQVTWSEMAMGMPLIQGDKGEWPLMKAHES 313
Query: 313 E--------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGC 350
E DL FG Q+ N P++ TK ++L E + +D+N GC
Sbjct: 314 EISPPKFLGKNTVVQGYDNSKDLKFGAQIAANKPWLATKTVEVLTEYCPKLRAIDLNCGC 373
Query: 351 PIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
PI + ++GSGS LL ++ E ++ V+ PI
Sbjct: 374 PINLVCEKGSGSALLD--------------------SEAKLEHILRGMSYVSKEVPITVK 413
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
+ G+ +++ ++ +E V++ G G +
Sbjct: 414 IRMGTKDNHPTAQKLIKRLVLGGHEA------VESGKGTS----------------GVAA 451
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
ITLHGR+++QRY++ ADW YI +C+ L SR + D A + + R
Sbjct: 452 ITLHGRSKQQRYSRSADWSYIAECSALISR----LRKEQAAATDTAAEI--------DPR 499
Query: 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
Y GNGD S+EDY L + + VM+GRGALIKPW+F
Sbjct: 500 DLANGGHVY------------FVGNGDCYSHEDYYTHLANA-GVDTVMVGRGALIKPWLF 546
Query: 591 QEIKEKKLFD 600
+EI++ + D
Sbjct: 547 EEIEKGQYLD 556
>gi|400601854|gb|EJP69479.1| dihydrouridine synthase [Beauveria bassiana ARSEF 2860]
Length = 772
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 158/578 (27%), Positives = 233/578 (40%), Gaps = 158/578 (27%)
Query: 89 CKYGEKCKFVHDKNVFM----KSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C++G++C+ HD ++ ++ + +C VF+++G+CP G CRF SH+ E
Sbjct: 160 CRFGDRCRLCHDIRKYLAEGRRADAKTFEGKCPVFVKYGWCPSGWKCRFVRSHMKE---- 215
Query: 145 IVKEDVLKEW------KNTVGNKT--------------------VNMLANEVRQDLRKHT 178
+ ED KE GN VN++ ++ D+ +
Sbjct: 216 VEHEDGRKELILVDNSGQDYGNPNKDTGVDAAEGAETEDSRRGIVNVVPMSIKIDMNRKR 275
Query: 179 YNFEKSEK-ICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSG 237
+F ++K I + +K NK N K + + T E+ ++
Sbjct: 276 LDFSDADKYIAWLDSVAKTNNK-------NHHRKKDQAEGDAAAAETTTTTTPAEDNRAQ 328
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL 296
V K +EK+++ + + L+PLTT GNLPFRRLC + G +T SEMA+ L
Sbjct: 329 FVDPP----FKPAEKRRLYFGPETPTLAPLTTQGNLPFRRLCVEMGCQLTYSEMALGMPL 384
Query: 297 LKSSPQEWALIKRHESE-----------------DL-FGVQLCGNNPYVLTKCTQLLEEQ 338
L+ +W L+K HESE DL FG Q+ G+ +V TK L
Sbjct: 385 LQGVKADWTLMKAHESEIAPPAYSGKVPLYDNTRDLRFGAQISGSAHWVTTKAASALSRF 444
Query: 339 MA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+ +D+N GCPI+ +YK G GS LL+
Sbjct: 445 CPHLRLIDLNCGCPIDMVYKSGGGSALLE------------------------------- 473
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNII 456
G L+R +I MN VS +PIT K R G+
Sbjct: 474 ------------------AHGKLER------MIRGMNAVSGEVPITAKIRMGVRSSRPTA 509
Query: 457 HNFMPKFR-----------DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
+ + G + ITLHGR+REQRYTK ADW YI CA L N
Sbjct: 510 PAVIERLAFGSKEHRERLGAPGCAAITLHGRSREQRYTKLADWGYIADCAALIRGYNEQR 569
Query: 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565
D S + GR GNGD S+ DY
Sbjct: 570 DALADTAADPDPSTLPAGGRLF------------------------FLGNGDCYSHVDYQ 605
Query: 566 ESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
++++ + VMIGRGALIKPW+F+EI++ + D A
Sbjct: 606 RHIEQA-RVDTVMIGRGALIKPWLFEEIEKGQYLDKSA 642
>gi|154321557|ref|XP_001560094.1| hypothetical protein BC1G_01653 [Botryotinia fuckeliana B05.10]
gi|187471047|sp|A6RMI1.1|DUS3_BOTFB RecName: Full=tRNA-dihydrouridine(47) synthase [NAD(P)(+)];
AltName: Full=tRNA-dihydrouridine synthase 3
gi|347831030|emb|CCD46727.1| similar to tRNA-dihydrouridine synthase 3 [Botryotinia fuckeliana]
Length = 750
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 150/558 (26%), Positives = 248/558 (44%), Gaps = 131/558 (23%)
Query: 89 CKYGEKCKFVHD-KNVFMKSKPEDIS---EQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +G+ CK H+ + + + D++ +C V+ +G C G CRF SH E
Sbjct: 169 CSFGDSCKCEHNLRKYLAEGRRADLTTFNSKCPVWEDNGTCLAGWKCRFVGSHSKE---- 224
Query: 145 IVKED-----VLKEWKNTVGN----------KTVNMLANEVRQDLRKHTYNFEKSEKICK 189
I +ED VL + + +G+ VN+++ + + DL K EKS
Sbjct: 225 IQREDGRMELVLIDDSDRMGDTALGYEEALGSVVNVISTKDKIDLAKKKTPMEKS----- 279
Query: 190 ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKN 249
D +Q+S+ + + + +D + +++ ++ +
Sbjct: 280 ----------DLYTTWLDQNSEEVNRQSNLRKDQKNDQTEEEKQENRARYVEPPFLP--- 326
Query: 250 SEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK 308
SEK++I + + L+PLTT GNLPFRRLC + GA +T SEMA++ LL+ EWAL+K
Sbjct: 327 SEKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLLQGQKSEWALMK 386
Query: 309 RHESE---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVD 345
H+SE DL FG Q+ + P++ K ++L + + +D
Sbjct: 387 AHKSEVTPPRVNSDRTSIVRKYDNSKDLKFGTQISASKPFMAIKAAEVLSRFVPHLRVID 446
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N GCPIE +Y+QG+GS LL + P L E+M+ V+
Sbjct: 447 LNCGCPIELVYRQGAGSALL------------DAPSKL--------EKMIRGMNAVSGEV 486
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
PI + G+ +G + + ++ + + R G
Sbjct: 487 PITAKIRMGTMTG-------KPTAFKTIERLAFGGVESRERLGAP--------------- 524
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
G + ITLHGR+R+QRYTK ADW YI +CA L + ++ K D +++ R
Sbjct: 525 -GCAAITLHGRSRQQRYTKSADWSYIAECAAL-------VKSYNQKKDDLTDTVMEPDAR 576
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
T + + GNGD S+ DY + ++ + + VM+ RGALI
Sbjct: 577 TLPNAPDGKIHF---------------IGNGDCYSHIDYLDHIQNA-GVDSVMVARGALI 620
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPW+F+EI++ ++ D A
Sbjct: 621 KPWLFEEIEKGQVLDKSA 638
>gi|358370106|dbj|GAA86718.1| tRNA dihydrouridine synthase [Aspergillus kawachii IFO 4308]
Length = 747
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 155/558 (27%), Positives = 243/558 (43%), Gaps = 109/558 (19%)
Query: 89 CKYGEKCKFVHDKNVFMKS-KPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDEN-GG 143
C +GEKC++ HD ++K K ED++ C V+ +G C +G CRF SH +E
Sbjct: 145 CTFGEKCRYEHDLRKYLKEHKREDLTTFNGVCPVWDINGKCFVGWKCRFVGSHSEERETA 204
Query: 144 NIVKEDVL---KEWKNTVG--------NKTVNMLANEVRQDLRKHTYNFEKSEKICK--E 190
+ KE VL +E K V + VN+ + E + L + +F ++E E
Sbjct: 205 DGRKELVLIEDEERKKKVQRLVPFAGEDGAVNVASMEDKIALARRKMDFPRAEPYSNWLE 264
Query: 191 NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIK--IK 248
N + E + +G E+ + D K E + ++
Sbjct: 265 NTSRTIERELHKRHRAAPVGAETKGEEKKDAETKDAETKDAENKEEKEENRALYVEPPFM 324
Query: 249 NSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALI 307
SEK+++ + + L+PLTT GN+PFRRLC + GA T SEMA++ L++ + EWAL+
Sbjct: 325 PSEKRRLYFGPETPALAPLTTQGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALM 384
Query: 308 KRHESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVD 345
+ HESE L FG Q+ N P+ K T+ L + + +D
Sbjct: 385 RAHESEMLPPTMLPGADIVQGYDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVID 444
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N GCPI+ ++K G+GS LL+ + E+++ V+
Sbjct: 445 LNCGCPIDLVFKDGAGSALLEHPSKL--------------------EKIIRGMNTVSDQI 484
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
PI + G T N ++L +T + G ++ + + H+
Sbjct: 485 PITVKIRMG----------------TKDNNPNALKLTERLLLGGYETSLLHHDGAAG--- 525
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
A+ ITLHGR+R+QRYT+QADW+YI +CA L R N R+ A G+
Sbjct: 526 --AAAITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDAVTDTIREPDARTQPNGGK 583
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
GNGD S+ DY + + + VM+GRG LI
Sbjct: 584 VY------------------------FLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLI 618
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPW+F+EI+ + D A
Sbjct: 619 KPWLFEEIQAGQYLDKSA 636
>gi|401409366|ref|XP_003884131.1| Dihydrouridine synthase, related [Neospora caninum Liverpool]
gi|325118549|emb|CBZ54100.1| Dihydrouridine synthase, related [Neospora caninum Liverpool]
Length = 1295
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 104/345 (30%), Positives = 160/345 (46%), Gaps = 103/345 (29%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L L+PLTTVGNLPFRRLC + GA++T SEMAVA +++ E +L+KRH+SE FGVQ
Sbjct: 894 RLILAPLTTVGNLPFRRLCVELGAEVTVSEMAVAKSIVEGKQSELSLLKRHKSEKFFGVQ 953
Query: 320 LCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
+ G P VL C +L E+++ DF+D+N CP+ ++++ F C
Sbjct: 954 IAGGTPEVLNACADVLASEEVSCDFIDLNAACPLVQLHRR------------FKAGAC-- 999
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+L+ ++ ++++ V E++
Sbjct: 1000 ----------MLDHPARLE--------------------------SLIEGVTMRQPEIA- 1022
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+TVK RT ++HNF+ + GA+ + +HGRT +QRYTK ADW Y+ +C +
Sbjct: 1023 --LTVKLRTANQGKKQVLHNFIQRLGQAGAAALIIHGRTAQQRYTKAADWGYVAQCREAL 1080
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
D ++ P+ G GDI
Sbjct: 1081 --DPSV----------------------------------------------PIIGCGDI 1092
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S ++ L S + +MI R ALIKPW+F EI E+K++DI A
Sbjct: 1093 FSSPEFEFRL-SSGAADALMIARAALIKPWVFTEISEQKVWDISA 1136
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 95 CKFVHDKNVFMKSKPEDISEQCYVFLQHGY--CPMGIACRFGSSHLDENGGNI 145
C+ HD F++++P D+ + FL G+ CP G CRFG+ H+D G NI
Sbjct: 681 CRRPHDLKAFLRTRPADVQTRACPFLDAGFPLCPFGACCRFGARHIDAEGFNI 733
>gi|428167331|gb|EKX36292.1| hypothetical protein GUITHDRAFT_158684 [Guillardia theta CCMP2712]
Length = 343
Score = 169 bits (429), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 91/249 (36%), Positives = 138/249 (55%), Gaps = 57/249 (22%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+++ EK + + L+PLTTVGNLPFRRLCK G DIT EMA+A+++++ + EWAL
Sbjct: 1 MEDYEKNMLPRDLQTILAPLTTVGNLPFRRLCKLQGCDITVGEMALASKIVEGNGGEWAL 60
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+RH SED+FG+Q+ G P V+ KC +L E + + DF D+N GCP++ I +G G+ LL+
Sbjct: 61 FRRHVSEDVFGIQIAGGWPDVVAKCAELFERECSADFFDLNCGCPLDGICGKGMGAELLE 120
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+ Q L+E
Sbjct: 121 KP-------------------QRLQE---------------------------------- 127
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNI--IHNFMPKFRDWGASLITLHGRTREQRYTK 484
++T + +SLP+TVK R G H+D + H +P+ DWGAS +T+HGR+R+QRY++
Sbjct: 128 --IVTIASRTTSLPMTVKIRVGQHEDPSRRNAHLLVPRLADWGASAVTIHGRSRQQRYSR 185
Query: 485 QADWDYIEK 493
A+W+YIE+
Sbjct: 186 LANWEYIEE 194
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/233 (37%), Positives = 129/233 (55%), Gaps = 55/233 (23%)
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
++FG+Q+ G P V+ KC +L E + DF D+N GCP++ I +G G+ LL++ LQ
Sbjct: 68 DVFGIQIAGGWPDVVAKCAELFERECSADFFDLNCGCPLDGICGKGMGAELLEKPQRLQE 127
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
++T + +SLP+TVK R G H+D
Sbjct: 128 IVTIASRTTSLPMTVKIRVGQHEDP----------------------------------- 152
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
SR N H +P+ DWGAS +T+HGR+R+QRY++ A+W+YIE+
Sbjct: 153 ----------SRRNA--HLLVPRLADWGASAVTIHGRSRQQRYSRLANWEYIEE------ 194
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+ GNGD+LS+EDY + L+ + MIGRGALIKPWIF+E+KE+K +DI
Sbjct: 195 -RPVIGNGDVLSWEDYEQHLQGG-KVQTCMIGRGALIKPWIFKEVKERKYWDI 245
>gi|405122501|gb|AFR97268.1| tRNA dihydrouridine synthase [Cryptococcus neoformans var. grubii
H99]
Length = 721
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/309 (34%), Positives = 151/309 (48%), Gaps = 40/309 (12%)
Query: 111 DISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKED---------VLKEW------- 154
D+ C V GYCP G CRF +H+ + E+ + EW
Sbjct: 174 DLETVCPVLKDLGYCPFGWRCRFLGAHVKHMAAAVDGEEKEKEAGPEKRMGEWQVEHWEQ 233
Query: 155 ---KNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSK 211
K K N +EV LR+ T +F SE K+ K K Q K
Sbjct: 234 SEVKKGWKQKETNWPEHEVLNALRRSTASFPFSEAYLKKVDPDKPFTLQNKKPTKQQPPK 293
Query: 212 ----VIEGREEINTPNTDDVIKVQEET----------KSGPVL-DTDIIKI--KNSEKKK 254
V++ E N P + EE+ + G V +T+ I + + EK++
Sbjct: 294 RKNIVLDEEEAANGPTSVPFAGDDEESAMNATENERNEKGRVYGETEAIDVPLRPEEKRR 353
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++W+G YL+PLTTVGNLPFRRLC +GA IT SEMA+A L+ + +EWAL++RHESE
Sbjct: 354 LNWEGGRYLAPLTTVGNLPFRRLCVDYGATITISEMALAQPLVYGAKEEWALVRRHESEK 413
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQM----AVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+FGVQ+ G P + +++ + VDFVDVN+GCPI+ ++ QG+GS L+
Sbjct: 414 MFGVQVAGGFPNRMVPAAEVIANTIGKGGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGR 473
Query: 371 FGVQLCGNN 379
G L G N
Sbjct: 474 LGKLLVGMN 482
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 10/94 (10%)
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLC---------SPAPLYGNGDILSYEDYTESLKK 570
+ +HGR+R+QRY+K ADW+YI+ C P P++GNGD S Y E +++
Sbjct: 517 LQIHGRSRQQRYSKPADWEYIKNCVTALRESVADANLPPVPIFGNGDCFSAASYYEEMER 576
Query: 571 SPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAI 604
S + GVM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 577 S-GVDGVMVARGALIKPWIFTEIKERREWDISAV 609
>gi|449302771|gb|EMC98779.1| hypothetical protein BAUCODRAFT_58554, partial [Baudoinia
compniacensis UAMH 10762]
Length = 694
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 165/589 (28%), Positives = 235/589 (39%), Gaps = 174/589 (29%)
Query: 88 TCKYGEKCKFVHDKNVFMK----SKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
TC YGEKC++ HD +++ + E C G CP G CRF SH E G
Sbjct: 89 TCAYGEKCRYEHDIRKYLREGKRADLETFGGVCPQLEGKGKCPAGWRCRFAGSHSREVEG 148
Query: 144 NIVKEDVLKEWKNTVG--NKTVNMLANEV---------------------RQDLRKHTYN 180
+ ++++ VG +K VN A + LRK +
Sbjct: 149 LDGRRELVQ-----VGFDDKQVNGHAAGGGDEEEEDGGGVGVVNVVSHVDKIQLRKKKFP 203
Query: 181 FEKSEK----ICKENKASKNENKDT--DDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
KS+K + +N N K T D + +D NT + I
Sbjct: 204 TPKSDKYMHWLNTQNLDPTNGKKVTIEHDHIEAEDGPF----------NTTNGIHDHRAR 253
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
P L + SEK+++ + + L+PLTT GNLPFRRLC GA IT SEMA+
Sbjct: 254 FVSPPL-------RASEKRRLHYGPETPVLAPLTTQGNLPFRRLCVSLGAQITWSEMAMG 306
Query: 294 TELLKSSPQEWALIKRHESE---------------------DL-FGVQLCGNNPYVLTKC 331
L++ EWAL+K ESE DL FG Q+ N P++ K
Sbjct: 307 LPLIQGDKGEWALMKACESEMAPPAYHPTNVVDEYGYDNSKDLKFGAQIAANKPWLALKT 366
Query: 332 TQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
T++L ++ +D+N GCPI+ + +QG+GS LL + P L K
Sbjct: 367 TEVLTALCPSLRAIDLNSGCPIDLVCRQGAGSALL------------DTPAKLEK----- 409
Query: 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGI 449
+ MN VS +PITVK R G
Sbjct: 410 --------------------------------------TLRGMNAVSGEVPITVKIRMGT 431
Query: 450 HKDNNIIHNFM-------PKFRDW-----GASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+ P+ +++ G + ITLHGR+++QRYT+ ADW YI CA L
Sbjct: 432 RDKQPTAEKLVQRLVLGGPEAKEYGEGPAGVAAITLHGRSKQQRYTRSADWGYIASCASL 491
Query: 498 C----SRDNNIIHNFM-PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ N++ P RD + S P
Sbjct: 492 VKNLKAERNSVADTIREPDARDLAPTASG--------------------TGTGTGSGLPF 531
Query: 553 Y-GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ GNGDILS+ DY+ + ++ + MI RGALIKPWIF+EI + D
Sbjct: 532 FCGNGDILSHLDYSTHIAEA-GVDSCMIARGALIKPWIFEEIAAGQYLD 579
>gi|323449937|gb|EGB05821.1| hypothetical protein AURANDRAFT_1138 [Aureococcus anophagefferens]
Length = 367
Score = 164 bits (416), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 109/354 (30%), Positives = 160/354 (45%), Gaps = 94/354 (26%)
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
E+K +D+ GK+Y++PLTTVGNLPFRR+ K+GADITC EMA+ L EWAL++RH
Sbjct: 1 ERKLVDFSGKVYVAPLTTVGNLPFRRVLTKYGADITCGEMALCPNLNDGQSSEWALLRRH 60
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ E FGVQL + + +++++ VDFVD+N+GCPI+ + +G G+ L++R
Sbjct: 61 KDEKCFGVQLSAAHGDQFGRACEVVDKYGDVDFVDLNMGCPIDLVCSKGGGAALMRRNK- 119
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
K +LE + L P+ + G
Sbjct: 120 --------------KVRSILEMGL------ERLSVPMTLKMRTGWDED------------ 147
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
P T G + H P + + +HGR+R RY++ A+W Y
Sbjct: 148 ---------PKLAHTMAGYAQ--AWAHELGPG----SVACVFVHGRSRTARYSRAANWAY 192
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+E A+ C D +PK
Sbjct: 193 VETVAR-CQDDA------IPKL-------------------------------------- 207
Query: 551 PLYGNGDILSYEDYTESLKKSPSISG-VMIGRGALIKPWIFQEIKEKKLFDIYA 603
P+ GNGDI+SY D+ E K +PS M+ RGALIKPW+ E+ EK+ +DI A
Sbjct: 208 PIIGNGDIMSYADWEEKRKTAPSTCDCAMLARGALIKPWLPTELHEKRAWDISA 261
>gi|241649968|ref|XP_002411233.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
gi|215503863|gb|EEC13357.1| tRNA-dihydrouridine synthase, putative [Ixodes scapularis]
Length = 326
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 75/144 (52%), Positives = 104/144 (72%), Gaps = 9/144 (6%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
I + +SE+ + W K LS + VGNLPFRR+CK++GAD+TC EMA+A+ LL+ EW
Sbjct: 15 IVLSSSERTR--WASKNVLS--SQVGNLPFRRICKEFGADVTCGEMAMASNLLQGQQSEW 70
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH SEDLFGVQ+CG + +T+C QLL E+ +VDFVD+N+GCPI+F+YK+G+GSGL
Sbjct: 71 ALLKRHASEDLFGVQVCGAHADQMTRCAQLLTEKCSVDFVDINMGCPIDFVYKKGAGSGL 130
Query: 365 LQRAN-----LFGVQLCGNNPYVL 383
+ RA +FG+ + P L
Sbjct: 131 MGRAKKLSEIVFGMSSVMDVPLTL 154
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDI 601
S V RGALIKPWIF EIKE++ +DI
Sbjct: 190 SAVCSSRGALIKPWIFMEIKEQRHWDI 216
>gi|409047259|gb|EKM56738.1| hypothetical protein PHACADRAFT_183331 [Phanerochaete carnosa
HHB-10118-sp]
Length = 291
Score = 152 bits (383), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 137/259 (52%), Gaps = 17/259 (6%)
Query: 118 VFLQHGYCPMGI----ACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+FLQH + ++ D +G + K+ +N V +N + + +
Sbjct: 17 IFLQHARSSRRLESADTVSDAATSADTSG-----KGTTKKARNIVAETELNFVTGDTLKQ 71
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTD-----DVI 228
+R + ++ KE + ++NE K ++ E E + P D
Sbjct: 72 IRSKKFPHPIADACLKELQEAQNEGNGAK-FEKPALAETAEAGTETSEPTQDASHPESTS 130
Query: 229 KVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
K E ++ DT + ++ +EKK++ W+GK YL+PLTTVGNLPFRRLC +GADITC
Sbjct: 131 KPSENSEGLSQADTPDVPLRAAEKKRLHWKGKTYLAPLTTVGNLPFRRLCVDYGADITCG 190
Query: 289 EMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE--QMAVDFVDV 346
EM +A L+ S +E++LI+RH E FG+Q+ G+ P +L ++L + + +DFVD+
Sbjct: 191 EMGLANSFLQGSKEEYSLIRRHPEERTFGIQVAGSKPQLLVPAAEILGKVCEGNLDFVDL 250
Query: 347 NLGCPIEFIYKQGSGSGLL 365
N GCPI+ +YK GSGS +
Sbjct: 251 NCGCPIDLVYKTGSGSARM 269
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEE--QMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
FG+Q+ G+ P +L ++L + + +DFVD+N GCPI+ +YK GSGS +
Sbjct: 218 FGIQVAGSKPQLLVPAAEILGKVCEGNLDFVDLNCGCPIDLVYKTGSGSARM 269
>gi|302409896|ref|XP_003002782.1| tRNA-dihydrouridine synthase [Verticillium albo-atrum VaMs.102]
gi|261358815|gb|EEY21243.1| tRNA-dihydrouridine synthase [Verticillium albo-atrum VaMs.102]
Length = 466
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 157/334 (47%), Gaps = 51/334 (15%)
Query: 185 EKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKV-QEETKSGPVLDTD 243
E+ K K +++ S+ G + P DV + +SG
Sbjct: 12 ERAAKRVKIDALPPLESETPSGQNGSRANGGEQAAEKPQGGDVAMADAPKGESGHDGSVP 71
Query: 244 IIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
+K SEK+K+ + + L+PLTT GNLPFRRL + GA++T SEMA+ L++ +
Sbjct: 72 EAPLKPSEKRKLYFGRDTPALAPLTTQGNLPFRRLAVELGAELTYSEMAMGLPLIQGTKA 131
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
+W L+K HESE V G PI Y
Sbjct: 132 DWTLLKAHESE-----------------------------LVPPKAGGPIVQGYDNA--- 159
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQ 421
+ FG Q+ N P+V K + L+ + + +D+N GCPI+ ++K G GS LL+
Sbjct: 160 ----KDIKFGAQISANQPWVAVKAAECLKRFVPHLRVIDLNCGCPIDMLFKAGGGSALLE 215
Query: 422 RANILQSVITCMNEVSS-LPITVKTRTGIHKD----NNIIHNFMPKFRDW-------GAS 469
L+ ++ MN VS +P+TVK RTG+ + +II+ R+ G +
Sbjct: 216 AHGKLERMVRGMNTVSGEIPVTVKIRTGVRNNRPTATSIINKLAFGAREHRERLGAPGCA 275
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503
ITLHGR+REQRYT++ADW Y+ +CA L N+
Sbjct: 276 AITLHGRSREQRYTRRADWSYVAECAALIKSYND 309
>gi|443920613|gb|ELU40503.1| zinc finger dihydrouridine synthase [Rhizoctonia solani AG-1 IA]
Length = 667
Score = 149 bits (377), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 155/611 (25%), Positives = 235/611 (38%), Gaps = 201/611 (32%)
Query: 51 KKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPE 110
K+ ++ KG NKAR V + E C ++ + C GE C+F HD ++ +KP
Sbjct: 107 KEKRKEQKGSNKARKFARV-QDEVALC---HGASRGEGCIDGEGCRFSHDIARYLSTKPT 162
Query: 111 DIS-------------------------------EQCYVFLQHGYCPMGIACRFGSSHLD 139
D++ C F G C G CR+ SH++
Sbjct: 163 DLAFPSKDLLTSQPFVSLPENQALSESHPSINKASACPNFACSGKCQSGFKCRYLGSHVE 222
Query: 140 ---ENGGNIVK--EDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKAS 194
NI K +D K K + N ++ +++ LR H Y F S+ E
Sbjct: 223 LQESETSNIFKLIKDEEKYEKMKSNSLEFNFPSSGLQKVLRTHKYPFPISDAYVAELSLL 282
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
NENK +VIE E + V E ++ DT + ++ SEKK+
Sbjct: 283 MNENKS---------GQVIEPPLEPH----QKTEGVDPEAQN----DTPDVPLRASEKKR 325
Query: 255 IDWQGKLYLSPLTTVGNL-PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+ WQG + + L PFRRLC
Sbjct: 326 LRWQGMSCMGAFGLIPYLSPFRRLCAG--------------------------------- 352
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS--GLLQR---A 368
FG Q+ C+++ Q + QG+ S L++R
Sbjct: 353 --FGAQIT---------CSEMALSQSLL----------------QGANSEWSLVRRHPSE 385
Query: 369 NLFGVQLCGNNPYVLTKCTQLL---------EEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419
+FGVQ+ G+ L + +LL E+ +DFVDVN GCPI+ ++K G+GS
Sbjct: 386 KIFGVQIAGSKIPQLVRAAELLANEFGPKSGRERAQIDFVDVNCGCPIDMVFKSGAGS-- 443
Query: 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT--LHGRT 477
+P+T+K RTGI N H MP+ WG + T +HGRT
Sbjct: 444 -------------------VPLTIKVRTGIKDGRNTSHKLMPRLARWGVNAFTVGIHGRT 484
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRYTK ADWDYI++C + TL T ++ D
Sbjct: 485 RQQRYTKFADWDYIKECVE------------------------TLRTSTEDE------DR 514
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
Y C ++E Y +++++ + G+M+GRGALIKPWIF +
Sbjct: 515 KY-RNCGG--------------AFEQYWANVEQT-GVDGIMVGRGALIKPWIFSGLVTSA 558
Query: 598 LFDIYAIVWKW 608
+ + + W
Sbjct: 559 IRETHESSSHW 569
>gi|109126451|ref|XP_001113869.1| PREDICTED: tRNA-dihydrouridine synthase 3-like, partial [Macaca
mulatta]
Length = 246
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 102/188 (54%), Gaps = 51/188 (27%)
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
G G L+ R+ Q ++ MN+V +P+TVK RTG+ +
Sbjct: 1 GGGCALMNRSTKFQQIVRGMNQVLDVPLTVKIRTGVQERV-------------------- 40
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 41 -----------------------------NLAHRLLPELRDWGVALVTLHGRSREQRYTK 71
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ADW YIE+C + SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EI
Sbjct: 72 LADWQYIEECVKAASPMPLFGNGDILSFEDANRAMQT--GVAGIMIARGALLKPWLFTEI 129
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 130 KEQRHWDI 137
>gi|440800662|gb|ELR21697.1| Dihydrouridine synthase (Dus) [Acanthamoeba castellanii str. Neff]
Length = 354
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/325 (30%), Positives = 142/325 (43%), Gaps = 94/325 (28%)
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MA+A LL+ P EWAL++RH SED+FGVQLCG +P LTKC Q+L+E ++VDFVD+N G
Sbjct: 1 MALAENLLQGQPSEWALLRRHPSEDIFGVQLCGPHPDHLTKCGQVLDETISVDFVDINCG 60
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ + +G+GS LL R + +V + L CP+
Sbjct: 61 CPIDLVVNKGAGSALLDRPRRL---------------------EGIVRGMATVLSCPLTV 99
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVK-----------TRTGIHKDNNIIHN 458
K L + + + P +K RTG + H
Sbjct: 100 --KVLLLLLCLLAHPLSHARYHLVAPPRPAPPQLKLFGAHARRAQQIRTGKDEKAPNAHK 157
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518
+P + GA+ +T RY+++ADW YI +CA+
Sbjct: 158 LIPLLAECGAAAVT--------RYSREADWSYIRQCAE---------------------- 187
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
SP P+ GNGDI + E+ K+ +S +M
Sbjct: 188 ----------------------------TSPIPIIGNGDIYGPQQAAEA--KAAGVSTIM 217
Query: 579 IGRGALIKPWIFQEIKEKKLFDIYA 603
+ RGALIKPW+F EIKE + +DI A
Sbjct: 218 VARGALIKPWVFTEIKENRDWDISA 242
>gi|307110528|gb|EFN58764.1| hypothetical protein CHLNCDRAFT_140504 [Chlorella variabilis]
Length = 451
Score = 145 bits (366), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 104/340 (30%), Positives = 152/340 (44%), Gaps = 107/340 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+G+L L+PLT G LPFRRLC GA +T SEMA A +LLK + +E A+++R +E +G
Sbjct: 67 RGQLMLAPLTRGGCLPFRRLCAAHGAKVTYSEMAFARQLLKGNRKELAILRRAGNEQCYG 126
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
V Q+A + +D +G +G+L V G
Sbjct: 127 V-------------------QIATNVID------------EGVRAGVL-------VAEAG 148
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
DF+D+N GCPI ++G G+ LL++ + L ++ +
Sbjct: 149 ------------------ADFLDLNCGCPIYEATRRGLGAALLRKPHKLARLVNGIAARL 190
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+TVK R G
Sbjct: 191 PLPLTVKIRLGE------------------------------------------------ 202
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S D +H + GA+ +T+HGRT EQRY K ADW+ +++ A S PL GNGD
Sbjct: 203 -SADKINVHEMVGLLEQAGAAAVTVHGRTMEQRYKKAADWELVQQVAAQHS-VPLVGNGD 260
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
+L++ + L S + VM+GRGALIKPW+FQE+KE +
Sbjct: 261 VLTHYEVRRRL-DSHGLLTVMVGRGALIKPWLFQEVKEGR 299
>gi|296418297|ref|XP_002838778.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634739|emb|CAZ82969.1| unnamed protein product [Tuber melanosporum]
Length = 689
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 144/538 (26%), Positives = 223/538 (41%), Gaps = 157/538 (29%)
Query: 93 EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSH------------LDE 140
+KC F H+ ++KSK +D C V+ GYC G CR+ SH +DE
Sbjct: 171 KKCGFSHNLREYLKSKRDDSEGVCPVWELRGYCGGGWRCRWVGSHSKEDENGELYMVVDE 230
Query: 141 NGGNIVKEDVLKEWKNTVGN-KTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
+ E + +E K + N K +N ++ ++ LRK+ + +KSE I E + + +
Sbjct: 231 GKKKMYGEKIAEERKAKLANSKIINSVSMSLKIRLRKNEFPTKKSE-IYAEWEHKEKTTR 289
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQG 259
D D++ ++ P + +EK++I + G
Sbjct: 290 DGLGYEDKGDARA----SFVDAP------------------------VNAAEKRRI-YIG 320
Query: 260 K--LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA---TELLKSSPQEWALIKRHESED 314
K L+PLTT GNLPFRRL CS + A +E+ S P
Sbjct: 321 KETPLLAPLTTTGNLPFRRL---------CSRLGAALTYSEMAMSVPL------------ 359
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L G+ P E+ + S + FG Q
Sbjct: 360 -----LQGHKP---------------------------EWALLRAHASEIPN----FGAQ 383
Query: 375 LCGNNPYVLTKCTQLL--------EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+CG + T++L + + VD+N GCP++ +Y+QG GS LL + + L
Sbjct: 384 ICGTKIGTAVRATEVLTTLFPSAASSRHGLSLVDLNCGCPVDLVYRQGGGSALLDQPSKL 443
Query: 427 QSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
++ MN VS PIT K R I+ ++ ITLHGR+R+QRY++
Sbjct: 444 IKMLKGMNYVSGETPITCKIR--IYDAGDV-------------QAITLHGRSRQQRYSRD 488
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW YI + A L + ++R AD I+K A+
Sbjct: 489 ADWTYIAETAALI--------------------------KDLKRRSDTTAD-TAIDKEAR 521
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+ DY S+ + ++ GVM+ RGALIKPW+F+EI++ + D A
Sbjct: 522 DKPNVFFVGNGDCYSHVDYYNSIDQG-NVDGVMLARGALIKPWLFEEIQKGQYLDKSA 578
>gi|303277773|ref|XP_003058180.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460837|gb|EEH58131.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 229
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/336 (31%), Positives = 142/336 (42%), Gaps = 107/336 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GKL L+PLT GNLPFRRLC G ++T SEM A LK +P E A +++H+SE LFGV
Sbjct: 1 GKLLLAPLTKGGNLPFRRLCVSLGCEVTVSEMVFARFALKKNPVELARLRKHDSETLFGV 60
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ N +L E A DFVD+N GCPI +K+G G+ LL++
Sbjct: 61 QIATNQITEGVNAGRLAHEAGA-DFVDLNCGCPIHETWKRGLGAALLKK----------- 108
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
P L E++V D G PI
Sbjct: 109 -PRKL--------ERLVRGIAD---GIPI------------------------------- 125
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P+TVK R G H + GA+ + +HGRT+E RYTK A+W+ I
Sbjct: 126 -PLTVKIRLGAGSSEAPAHALAEAVENAGAAAVVIHGRTKEARYTKAANWETI------- 177
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + +R P+ GNGDI
Sbjct: 178 -------------------------GAIQAERGI------------------PVVGNGDI 194
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
L+ + + + S + ++GRGALIKPWIF+E K
Sbjct: 195 LTRYELNDRMGIS-NAHAAIVGRGALIKPWIFKEAK 229
>gi|431922346|gb|ELK19437.1| tRNA-dihydrouridine synthase 3-like protein [Pteropus alecto]
Length = 219
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 59/99 (59%), Positives = 79/99 (79%), Gaps = 2/99 (2%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW YIE+C + SP PL+GNGDILSYE
Sbjct: 8 NLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWQYIEQCVAVASPMPLFGNGDILSYE 67
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 68 DANRAMQT--GVAGIMIARGALLKPWLFTEIKEQRHWDI 104
>gi|440290626|gb|ELP83991.1| tRNA-dihydrouridine synthase, putative [Entamoeba invadens IP1]
Length = 538
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 114/231 (49%), Gaps = 54/231 (23%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
FG+QLC NP K LL +F ++N CPI+ + G G+ LL+R + ++
Sbjct: 250 FGIQLCVGNPVECAKAISLLN-GFDCNFYELNCACPIDLVCDTGMGARLLERPKKIAGLL 308
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
V+ P+ +K RTG
Sbjct: 309 AAARGVTERPVALKVRTG------------------------------------------ 326
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
C ++ I N +P D+G ++++HGRTR+QRYTK ADWDYI+ C L +
Sbjct: 327 ---CDEI-----TIAKNLVPFVEDYGCGMLSIHGRTRKQRYTKSADWDYIQTCCGL-TQC 377
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P+ G GDI +Y+DYT+++ S + V IGRGAL+KPWIF EIKEK+ +DI
Sbjct: 378 PVVGVGDIYTYDDYTKAM--STGVKSVAIGRGALMKPWIFTEIKEKRNWDI 426
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 89/173 (51%), Gaps = 10/173 (5%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+ KK + KL L L T GNLPFR+ K++G D+T SEM +A L++ + +WAL
Sbjct: 181 FETPSKKLMTMDNKLILPSLCTFGNLPFRKTAKRYGCDVTMSEMVMANALVEGNKSDWAL 240
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
I++ ED FG+QLC NP K LL +F ++N CPI+ + G G+ LL+
Sbjct: 241 IRKDPLEDNFGIQLCVGNPVECAKAISLL-NGFDCNFYELNCACPIDLVCDTGMGARLLE 299
Query: 367 RAN-----LFGVQLCGNNPYVL---TKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
R L + P L T C ++ + +V FV+ + GC + I+
Sbjct: 300 RPKKIAGLLAAARGVTERPVALKVRTGCDEITIAKNLVPFVE-DYGCGMLSIH 351
>gi|424513198|emb|CCO66782.1| TIM-barrel protein, nifR3 family [Bathycoccus prasinos]
Length = 530
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 146/333 (43%), Gaps = 108/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+PLT GNLPFRRLC + A + SEM+ A L + +P E ++RH+SE++FG Q+
Sbjct: 146 LWLAPLTKGGNLPFRRLCATFEAKVLVSEMSYARFLNRGNPVEKTHLRRHDSEEIFGAQI 205
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N + ++ E A DFVD+N GCP + K+G G+ LL++
Sbjct: 206 ATNIIEEGVRSARMAYEFNA-DFVDLNCGCPTHEVTKRGLGARLLRKP------------ 252
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +L+E G +G S LP
Sbjct: 253 ---AKLAKLVE----------------------GLANG------------------SPLP 269
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
++VK R G+ D + + + GAS++ +HGRT+EQRYTK A+W+ I ++ SR
Sbjct: 270 LSVKIRLGVEDDKPAL-KLAEEIENAGASVLIVHGRTKEQRYTKSANWNLI---GEIKSR 325
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
S P+ GNGDIL+
Sbjct: 326 -----------------------------------------------SKIPIIGNGDILT 338
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ + + + S + G M GRGALIKPWIF+E
Sbjct: 339 WYEARDKMALS-GVDGAMTGRGALIKPWIFKEF 370
>gi|145352754|ref|XP_001420702.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580937|gb|ABO98995.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 287
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 150/343 (43%), Gaps = 110/343 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLC-KKWGADITCSEMAVATELLKSSPQEWALIKRHESE--D 314
+G+L+L+PLT GN PFRRLC ++GA++ SEMA A L K + E A ++RHE + D
Sbjct: 1 RGQLWLAPLTKGGNAPFRRLCASEFGAEVVVSEMAFARFLAKGARVERARVRRHEGDAGD 60
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FG Q+ N + + DFVD+N GCPI +K+G G+ LL++
Sbjct: 61 CFGAQIATNAIEEGVNAALIASGEFGADFVDLNCGCPIHETWKRGLGAALLKKP------ 114
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
K +L+E G+ R ++
Sbjct: 115 ---------AKLERLVE--------------------------GIASRIDV--------- 130
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
P+TVK R GI + + GAS + +HGRT+EQRYTK AD+D I
Sbjct: 131 -----PLTVKIRLGIDSSSQ-ARRIAEGLENAGASAVVVHGRTKEQRYTKAADYDVIRDI 184
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R+ NI P+ G
Sbjct: 185 V----RERNI----------------------------------------------PIIG 194
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
NGD+L++ D + ++ S ++ +M+GRGALIKPWIF+E +E+K
Sbjct: 195 NGDVLTWYDARDRMEHS-GVAAMMVGRGALIKPWIFKEYRERK 236
>gi|222530304|ref|YP_002574186.1| NifR3 family protein [Caldicellulosiruptor bescii DSM 6725]
gi|222457151|gb|ACM61413.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor bescii DSM
6725]
Length = 328
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 106/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D +GK++L+P+ + FRRLC ++GAD+T +EM + L+ S + LI E E
Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMISSKALVLGSAKTKDLISFSEEEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ GVQ+ GN+P V+ + ++L+++ F+D+N+GCP+ + + G G L++
Sbjct: 62 IRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS P++VK R G +N F ++ GAS +T+HGRTR Q Y+ +ADW+ I K
Sbjct: 127 KVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEIIRKV 186
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +L P +
Sbjct: 187 KE------------------------------------------------KLKIP--VIA 196
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI+ +E ++ + + + S +MIGR AL PW+F +IKE
Sbjct: 197 NGDIVDFESAKKAYEVTRADS-IMIGRAALGNPWVFLQIKE 236
>gi|330914420|ref|XP_003296632.1| hypothetical protein PTT_06777 [Pyrenophora teres f. teres 0-1]
gi|311331132|gb|EFQ95267.1| hypothetical protein PTT_06777 [Pyrenophora teres f. teres 0-1]
Length = 698
Score = 133 bits (335), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 74/385 (19%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +GEKCKF HD ++K + D++ QC V+ G+C G CRF SH +E
Sbjct: 158 CPFGEKCKFEHDLRRYLKEGRRADLTTLNGQCPVYSVKGFCHFGWKCRFVGSHSEERTTE 217
Query: 145 ------IVKEDVLKEWK-----NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
++KED ++ K + + VN+++ +++ L + +S++ + +
Sbjct: 218 DGRQELVLKEDAERKAKLSGLDDEAEAEVVNVVSKDIKIGLSRRKIGTPRSDQYLEWIET 277
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
+ ++ D +++T +++K ++E + ++ + SEK+
Sbjct: 278 NARNEREMFDAA------------QMDT----EILKEEKEARRAEYVEA---PFRPSEKR 318
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
++ + + L+PLTT GN+P+RRLC +G +T SEMA+ L++ EW L+K HES
Sbjct: 319 RLYYGPETPMLAPLTTQGNMPYRRLCVDFGCQVTWSEMAMGMPLIQGDKGEWPLMKAHES 378
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL-F 371
E P +F+ K G +L F
Sbjct: 379 EI-----------------------------------SPPKFLGKNTVVQGYDNSKDLKF 403
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G Q+ N P++ TK ++L E + +D+N GCPI + ++GSGS LL L+ ++
Sbjct: 404 GAQIAANKPWLATKTVEVLTEYCPKLRAIDLNCGCPINLVCEKGSGSALLDSEAKLEHIL 463
Query: 431 TCMNEVS-SLPITVKTRTGIHKDNN 454
M+ VS +PITVK R G KDN+
Sbjct: 464 RGMSYVSKEVPITVKIRMGT-KDNH 487
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+EDY +L + + VM+GRGALIKPW+F+EI++ + D A
Sbjct: 538 GNGDCYSHEDYYNNLANA-GVDTVMVGRGALIKPWLFEEIEKGQYLDKSA 586
>gi|159110381|ref|XP_001705451.1| Dihydrouridine synthase, putative [Giardia lamblia ATCC 50803]
gi|157433536|gb|EDO77777.1| Dihydrouridine synthase, putative [Giardia lamblia ATCC 50803]
Length = 555
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 130/522 (24%), Positives = 199/522 (38%), Gaps = 136/522 (26%)
Query: 85 LEQTCKYGEKCKFVHDKNVF-MKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
L + CK KC HD + F + P S C+ +G CP + C + SSH E+
Sbjct: 52 LNKQCK-NPKCNAYHDLDEFSVYYTPPQTSISCHFLKTYGKCPFSVNCMYASSHFQESLD 110
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
++ + + + V +N DLR+ Y
Sbjct: 111 DLFAKKSVPTKEEVV--PLLNAFPGATLADLRRGEYR----------------------- 145
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
K+ E R + P+T + + K+S ++K L L
Sbjct: 146 -------KLGEKRSSV-MPSTS--------------FTSAFTRSKSSSEQK-----PLML 178
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ TVG +PFRRLC +G +IT EM A ++L QE IKRH E FG+QL G
Sbjct: 179 APMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQELRKIKRHPDEKCFGIQLAGR 238
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
L + + + + DF+D+N CP + K+ G+ L ANL
Sbjct: 239 G-QELMEIVNFISQCCSCDFIDLNAACPQDIATKKCCGAALA--ANL------------- 282
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM---NEVSSLP 440
+ +V VD CM E +P
Sbjct: 283 ---------KKLVSSVD-------------------------------CMVRGGEHYGVP 302
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCS 499
+ +K R G + + + R G +++H RT +QRY+K A+WDY+ L +
Sbjct: 303 VFLKIRAGDLRGDWTGDSVAQALRLSGLYGLSVHLRTAKQRYSKLANWDYLVSMRHALDN 362
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
+ + + P+ + +S T R +P L GNGDI
Sbjct: 363 CEESTAPDLEPQLKHDISSSTTNRPIIR--------------------TPPLLGGNGDIF 402
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
Y D ++ +I RGAL+KPWIFQEIKE + D+
Sbjct: 403 DYTDLHRD--DHSTVDYYLIARGALVKPWIFQEIKEGRRIDM 442
>gi|312621326|ref|YP_004022939.1| tim-barrel protein, nifr3 family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312201793|gb|ADQ45120.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 328
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 149/341 (43%), Gaps = 106/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D +GK++L+P+ + FRRLC ++GAD+T +EM + L+ S + LI + E
Sbjct: 2 LDIRGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMVSSKALVLGSAKTKELISFSDEEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ GVQ+ GN+P V+ + ++L+++ F+D+N+GCP+ + + G G L++
Sbjct: 62 IRGVQIFGNDPEVMAQSVKILQDEFEYHFIDINMGCPVPKLVRSGEGCALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS P++VK R G +N F ++ GAS +T+HGRTR Q Y+ +ADW+ I K
Sbjct: 127 KVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEIIRKV 186
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +L P +
Sbjct: 187 KE------------------------------------------------KLKIP--VIA 196
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI+ +E ++ + + + S +MIGR AL PW+F +IKE
Sbjct: 197 NGDIVDFESAKKAYEVTRADS-IMIGRAALGNPWVFLQIKE 236
>gi|308159933|gb|EFO62447.1| Dihydrouridine synthase, putative [Giardia lamblia P15]
Length = 556
Score = 132 bits (331), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 129/523 (24%), Positives = 189/523 (36%), Gaps = 137/523 (26%)
Query: 85 LEQTCKYGEKCKFVHDKNVF-MKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
L + CK KC HD + F + P S C+ +G CP + C + SSH E+
Sbjct: 52 LNKRCK-NPKCNAYHDLDEFSVHYTPPQTSIPCHFLKTYGKCPFSVNCMYASSHFQESLD 110
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
++ + + + V +N DLR+ Y
Sbjct: 111 DLFAKKPVPTKEEIV--PLLNAFPGATLADLRRGEYR----------------------- 145
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
K+ E+ S V+ + + K Q L L
Sbjct: 146 -------------------------KLGEKGSS--VMPSSSFISAFAHSKSSSEQRPLIL 178
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ TVG +PFRRLC +G +IT EM A ++L QE IKRH E
Sbjct: 179 APMCTVGTVPFRRLCIHYGCEITLCEMVFARDILHGDAQELRKIKRHPDE---------- 228
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
KC FG+QL G L
Sbjct: 229 ------KC---------------------------------------FGIQLAGRG-QEL 242
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM---NEVSSLP 440
+ + + DFVD+N CP + K+ G+ L L + + CM E +P
Sbjct: 243 MEIVNFISKCCSCDFVDLNAACPQDIATKKCCGAALAANLKKLVNSVDCMVRGGEHYGIP 302
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE--KCAQLC 498
+ +K R G N + R G +++H RT +QRY+K A+WDY + A
Sbjct: 303 VFLKIRAGDLHGNWTGSSVAHALRLSGLYGLSVHLRTAKQRYSKLANWDYSASMRHALDS 362
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+N + P+ + S T+ TR +P L GNGDI
Sbjct: 363 CEENTAKPDLEPQLKYDVGSSTTVTPSTR--------------------TPPLLGGNGDI 402
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
Y D ++ +I RGAL+KPWIFQEIKE + D+
Sbjct: 403 FDYTDLYRD--DHSTVDYYLIARGALVKPWIFQEIKEGRRIDM 443
>gi|312136045|ref|YP_004003383.1| tim-barrel protein, nifr3 family [Caldicellulosiruptor owensensis
OL]
gi|311776096|gb|ADQ05583.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor owensensis
OL]
Length = 328
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 112/343 (32%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
D +GK++L+P+ + FRRLC ++GA++T +EM + L+ S
Sbjct: 3 DIRGKIFLAPMAGFTDKVFRRLCSRFGANVTVTEMVSSKALVLGS--------------- 47
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
TK +L+ Q + GVQ+
Sbjct: 48 -------------TKTKELI---------------------------SFSQEEKIRGVQI 67
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++ ++ ++ + +
Sbjct: 68 FGSDPKVMAQSVKILQDEFEYDFIDINMGCPVPKLVKSGEGCALMKNPSLASRIVESIAK 127
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
VS P++VK R G +++ ++ YI
Sbjct: 128 VSRKPVSVKIRKGFDEES-----------------------------INAPEFAYI---- 154
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
++ GAS +T+HGRTR Q Y+ +ADW+ I K + P+ N
Sbjct: 155 ----------------LQESGASFVTVHGRTRTQLYSGKADWEIIRKVKEKVK-IPVVAN 197
Query: 556 GDILSYEDYTESLKKSPSISG---VMIGRGALIKPWIFQEIKE 595
GDI + ES K+ ++G +MIGR AL PW+F +IKE
Sbjct: 198 GDITDF----ESAKRVYEVTGADSIMIGRAALGNPWVFLQIKE 236
>gi|31789402|gb|AAP58518.1| hypothetical protein [uncultured Acidobacteria bacterium]
Length = 355
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/330 (27%), Positives = 132/330 (40%), Gaps = 106/330 (32%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
++P+T NLP+RRLC + GA IT SEM +A L + E+ALI+R E FGVQL G
Sbjct: 1 MAPMTKGSNLPYRRLCVELGARITVSEMTLARRLKQKRNSEFALIRRFPGEPCFGVQLAG 60
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
N P L+E + A DFVD+N GCPI++ ++G G+ + G P
Sbjct: 61 NKPDETAWAAALVESRGA-DFVDINFGCPIDYFTRKGLGASI------------GRQPQR 107
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+ + + ++ V+++P+T
Sbjct: 108 MRRLVEAIK------------------------------------------GSVTNIPVT 125
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
K R G + D+ D GA+ + +HGRTR RY ADWD I +
Sbjct: 126 AKIRLGWNDDDRNYLQQAQAAVDGGAAALFVHGRTRNARYRFAADWDAIARIVA------ 179
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
P P+ GNGD+L
Sbjct: 180 --------------------------------------------AVPVPVIGNGDLLFPH 195
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ + ++S + VM+ R ALIKPWIF+E
Sbjct: 196 EIAAARERS-GCAAVMVARAALIKPWIFRE 224
>gi|302872718|ref|YP_003841354.1| nifR3 family TIM-barrel protein [Caldicellulosiruptor obsidiansis
OB47]
gi|302575577|gb|ADL43368.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor obsidiansis
OB47]
Length = 328
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 147/343 (42%), Gaps = 112/343 (32%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
D +GK++L+P+ + FRRLC ++GAD+T +EM + L+ S
Sbjct: 3 DIRGKVFLAPMAGFTDKVFRRLCSRFGADVTVTEMVSSKALVLGS--------------- 47
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
TK +L+ Q + GVQ+
Sbjct: 48 -------------TKTKELI---------------------------SFSQEEKIRGVQI 67
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++ ++ ++ + +
Sbjct: 68 FGSDPEVMAQAAEILQDEFEYDFIDINMGCPVPKLVKSGEGCALMKNPSLASRIVERVAK 127
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
VS P++VK R G +++ F ++ GAS +T+HGRTR+Q Y+ +ADW+ I K
Sbjct: 128 VSRKPVSVKIRKGFDEESINAPEFAYILQESGASFVTVHGRTRKQLYSGKADWEIIRKVK 187
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ +L P + N
Sbjct: 188 E------------------------------------------------RLKIP--VVAN 197
Query: 556 GDILSYEDYTESLKKSPSISG---VMIGRGALIKPWIFQEIKE 595
GDI + ES K+ I+G +MIGR AL PW+F +IKE
Sbjct: 198 GDITDF----ESAKRVYEITGADSIMIGRAALGNPWVFLQIKE 236
>gi|15896446|ref|NP_349795.1| NifR3 family protein [Clostridium acetobutylicum ATCC 824]
gi|337738405|ref|YP_004637852.1| NifR3 family protein [Clostridium acetobutylicum DSM 1731]
gi|384459915|ref|YP_005672335.1| NifR3 family enzyme [Clostridium acetobutylicum EA 2018]
gi|15026269|gb|AAK81135.1|AE007815_5 NifR3 family enzyme [Clostridium acetobutylicum ATCC 824]
gi|325510604|gb|ADZ22240.1| NifR3 family enzyme [Clostridium acetobutylicum EA 2018]
gi|336293008|gb|AEI34142.1| NifR3 family protein [Clostridium acetobutylicum DSM 1731]
Length = 321
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 89/340 (26%), Positives = 137/340 (40%), Gaps = 106/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ ++G ++L+P+ V ++ FR++CK GAD+T +EM A L S L+K +
Sbjct: 6 LSFEGNVFLAPMAGVTDIVFRKICKGMGADLTYTEMVSAKALYYGSENTEELMKISD--- 62
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
EE+ A VQ
Sbjct: 63 ---------------------EEEYA-------------------------------AVQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G+ P ++ K + E + +D+N+GCP I K G GS L++ + ++ +
Sbjct: 71 MFGSEPDIMAKACEKFNEDDKICIIDINMGCPAHKIVKNGEGSALMKSPKLAYEIVKAVK 130
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ S+ P+TVK R G +DN F D GA +IT+HGRTR Q Y +ADWD I+
Sbjct: 131 KASNKPVTVKFRKGFDEDNINAVEFAKVIEDAGADMITVHGRTRAQMYEGKADWDIIKAV 190
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 191 KKSVS--------------------------------------------------IPVIG 200
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI+S ED L+ + + GVM+ R A+ PWIF+EIK
Sbjct: 201 NGDIVSGEDAVRMLEYT-NCDGVMVARAAMGNPWIFREIK 239
>gi|253748358|gb|EET02530.1| Dihydrouridine synthase, putative [Giardia intestinalis ATCC 50581]
Length = 553
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 189/520 (36%), Gaps = 134/520 (25%)
Query: 85 LEQTCKYGEKCKFVHDKNVF-MKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG 143
L + CK KC HD + F + P S C+ +G CP + C + SSH E+
Sbjct: 52 LNKECK-NPKCDAYHDLDEFSVHYTPPQTSIPCHFLSTYGKCPFSVNCMYASSHFQESLD 110
Query: 144 NIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDD 203
++ + + + V +N +LR+ Y K +
Sbjct: 111 DLFNKRPVPTKEEIV--PLLNTFPGATLANLRRGEYR------------------KLGEK 150
Query: 204 CCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYL 263
C + S P I K S + K L L
Sbjct: 151 CSSDMPS---------------------------PSFKNAFIGSKQSSECK-----PLML 178
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ TVG +PFRRLC +G +IT EM A ++L QE IKRH E FG+QL G
Sbjct: 179 APMCTVGTIPFRRLCIHYGCEITLCEMVFARDILHGDAQELRKIKRHPDEKCFGIQLAGR 238
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383
L + + + + DFVD+N CP + K+ G+ L +NL
Sbjct: 239 G-QDLMEIINFIAQCCSCDFVDLNAACPQDIATKKCCGAALA--SNL------------- 282
Query: 384 TKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV 443
+ +V VD + + GS G LPI +
Sbjct: 283 ---------KKLVSSVDC--------MVRGGSHYG--------------------LPIFL 305
Query: 444 KTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS--RD 501
K R G N + R +++H RT +QRY+K A+WDY+ Q +
Sbjct: 306 KIRAGDMYGNWTGDSVAQALRLSRLYGLSVHARTAKQRYSKMANWDYLASMRQTLEDHEE 365
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
P+ + I L T P L GNGDI Y
Sbjct: 366 GAAKSEVEPQLKQG----IALDSTTTHD-------------------PPLLGGNGDIFDY 402
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D ++ +I RGAL+KPWIFQEIKE + D+
Sbjct: 403 TDLYRD--DHSTVDYYLIARGALVKPWIFQEIKEGRRIDM 440
>gi|255071937|ref|XP_002499643.1| dihydrouridine synthase-like family protein [Micromonas sp. RCC299]
gi|226514905|gb|ACO60901.1| dihydrouridine synthase-like family protein [Micromonas sp. RCC299]
Length = 495
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 140/336 (41%), Gaps = 107/336 (31%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L L+PLT GNLPFRRLC +G ++T SEM A LL+ +P E A ++RH SE LFGVQ
Sbjct: 112 ELLLAPLTKGGNLPFRRLCVDFGCNVTVSEMVFARFLLRRNPVEKARLRRHPSEKLFGVQ 171
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L N V L DF+D+N GCPI +K+G G+ LL++
Sbjct: 172 LA-TNQIVEGVNAAALAADAGADFIDLNCGCPIHETWKRGLGAALLKKPKKL-------- 222
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
E++V D P+ + G+G + ++V
Sbjct: 223 ------------ERLVRGIAD-GTRLPLTVKIRLGAGGSEAPARQLAEAV---------- 259
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+ GA+ + +HGRT+EQRYT+ A+WD I +
Sbjct: 260 ------------------------ENAGAAAVIIHGRTKEQRYTRAANWDLIGE----IQ 291
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
R+ I P+ GNGDIL
Sbjct: 292 RERGI----------------------------------------------PVVGNGDIL 305
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
++ ++ + L +S M GRGALIKPWIF+E+ E
Sbjct: 306 THYEHRDRLARS-GAHAAMTGRGALIKPWIFKEVAE 340
>gi|302769492|ref|XP_002968165.1| hypothetical protein SELMODRAFT_409324 [Selaginella moellendorffii]
gi|300163809|gb|EFJ30419.1| hypothetical protein SELMODRAFT_409324 [Selaginella moellendorffii]
Length = 325
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/307 (31%), Positives = 152/307 (49%), Gaps = 28/307 (9%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A GVA +K+EF+V V+ +++ D K+ +++KK K+ ++ K + +
Sbjct: 26 AKGVAPVKKEFLVSAQVR----STISDKDAAKI---------SSEKKSKR--KIRKERKQ 70
Query: 63 ARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQH 122
AR K E C + + C +GE C+F HD ++ KPED+ C +
Sbjct: 71 AR------KLE--VCNAVVRAGDPNACPFGENCRFSHDLEGYLAQKPEDLPGVCPSVNLN 122
Query: 123 GYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFE 182
CP G+ CRF +H ++ E + + T G +N+L + ++ L K +F
Sbjct: 123 VPCPYGVRCRFYGTHTKQDLPKENPEGAMDGDEETSGAGEINVLRKDFQKSLWKKLESFP 182
Query: 183 KSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT 242
K++ + ++ E +E N + D V +++ PV D
Sbjct: 183 KADSQLQAMGLKNKVYGPKKGATTEGENGGAETHDENNDVSDDAVPPLKKPKLVDPVEDA 242
Query: 243 ----DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK 298
D K+ + EKK ID +GKLYL+PLTTVGNLPFRRLCKK GAD+TC EMA+ T LL+
Sbjct: 243 KEQGDDCKLNSREKKIIDLKGKLYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMCTNLLQ 302
Query: 299 SSPQEWA 305
+ QE A
Sbjct: 303 LA-QEAA 308
>gi|133778319|gb|AAH23942.1| Dus3l protein [Mus musculus]
Length = 274
Score = 129 bits (323), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 103/168 (61%), Gaps = 16/168 (9%)
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLH----GRTREQRYTKQADWDYIEKCAQLC--S 499
RTG+ + ++ H +P+ RDWG +L+T+ G T + + + + C C S
Sbjct: 2 RTGVQERVSLAHRLLPELRDWGVALVTVGVGQCGHT--SGFLWLSRFLVLSLCLVSCCLS 59
Query: 500 RDNNIIHNFMPK--FRDWGASLIT----LHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+H +P + SL+ LHGR+REQRYT+ ADW YIE+CA++ SP PL+
Sbjct: 60 VPPPALHLLIPSACYLHLQPSLLLPHPQLHGRSREQRYTRLADWPYIEQCAKVASPMPLF 119
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 120 GNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIKEQRHWDI 165
>gi|255527649|ref|ZP_05394509.1| TIM-barrel protein, nifR3 family [Clostridium carboxidivorans P7]
gi|296186914|ref|ZP_06855315.1| TIM-barrel protein, nifR3 family [Clostridium carboxidivorans P7]
gi|255508662|gb|EET85042.1| TIM-barrel protein, nifR3 family [Clostridium carboxidivorans P7]
gi|296048628|gb|EFG88061.1| TIM-barrel protein, nifR3 family [Clostridium carboxidivorans P7]
Length = 326
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 138/352 (39%), Gaps = 111/352 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++IKN E KK ++L+P+ V ++ FR LCK+ G ++ +EM A L S
Sbjct: 1 MRIKNLEFKK-----NVFLAPMAGVTDIAFRELCKEMGCELVYTEMISAKALFYGSKNTK 55
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
++ + E VQ+ GN+P V+ K + + VD+N+GCP I K G GS L
Sbjct: 56 DMLVISKQEAPAAVQIFGNDPLVMAKACDFFNDNEDICLVDINMGCPAPKIVKNGEGSAL 115
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
++ L Q+++E
Sbjct: 116 MKDPKL---------------AAQIVKE-------------------------------- 128
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+ + SS P+T K R G DN F + G +T+HGRTREQ Y
Sbjct: 129 --------VKKASSKPVTAKFRKGFDSDNINAVEFAKELEQAGVDAVTVHGRTREQMYEG 180
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
+ADW+ IEK Q S
Sbjct: 181 KADWNMIEKVKQAVS--------------------------------------------- 195
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
P+ GNGD+++ ED S+ K+ + +MIGRGA+ PWIF +I EK
Sbjct: 196 -----IPVIGNGDVVTPEDAV-SIFKTTNCDAIMIGRGAMGNPWIFNQIDEK 241
>gi|168049709|ref|XP_001777304.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671280|gb|EDQ57834.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 99/203 (48%), Gaps = 51/203 (25%)
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
+GCPI+ + +G GS LL + LQ ++ + + P+TVK R G + N
Sbjct: 1 VGCPIDVVVNKGGGSSLLTKPQRLQEIVRAASGSINTPLTVKLRMGFFEGRN-------- 52
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
CA H+ +P WGA+ +T+
Sbjct: 53 -------------------------------CA----------HSLLPDLGSWGATAVTI 71
Query: 523 HGRTREQRYTKQADWDYIEKCA-QLCSPAPLYGNGDILSYEDYTESLKKSPS-ISGVMIG 580
HGRTR+QRY+K ADWDYI +C S L GNGD+ SY DY L+ S ++ MI
Sbjct: 72 HGRTRQQRYSKLADWDYINQCVTNGPSDVQLIGNGDVFSYTDYNGHLESSGGKLATCMIA 131
Query: 581 RGALIKPWIFQEIKEKKLFDIYA 603
RGALIKPW+F EIKE++ +DI A
Sbjct: 132 RGALIKPWLFTEIKEQRHWDITA 154
>gi|344995402|ref|YP_004797745.1| nifR3 family TIM-barrel protein [Caldicellulosiruptor lactoaceticus
6A]
gi|343963621|gb|AEM72768.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 328
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 55/242 (22%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D +GK++L+P+ + FRRLC K+GAD+T +EM + L+ S + LI E E
Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSKFGADVTVTEMVSSKALVLGSAKTKELISFSEEEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ G+Q+ G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++
Sbjct: 62 IRGIQIFGSDPEVMAQSVKILQDEFEYDFIDINMGCPVPKLVKSGEGCALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS P++VK R G +++ F ++ GAS +T+HGRTR Q Y+ +ADW+ I K
Sbjct: 127 KVSRKPVSVKIRKGFDEEDINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEIIRKV 186
Query: 495 AQ 496
+
Sbjct: 187 KE 188
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 51/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++ ++ ++
Sbjct: 64 GIQIFGSDPEVMAQSVKILQDEFEYDFIDINMGCPVPKLVKSGEGCALMKNPSLAAKIVE 123
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +VS P++VK R G +++ ++ YI
Sbjct: 124 EVAKVSRKPVSVKIRKGFDEED-----------------------------INAPEFAYI 154
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++ GAS +T+HGRTR Q Y+ +ADW+ I K + P
Sbjct: 155 --------------------LQESGASFVTVHGRTRAQLYSGKADWEIIRKVKEKVK-IP 193
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ NGDI +E + + + + G+MIGR AL PW+F +IKE
Sbjct: 194 VVANGDITDFESAKRAYEVTRA-DGIMIGRAALGNPWVFLQIKE 236
>gi|312794505|ref|YP_004027428.1| tim-barrel protein, nifr3 family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181645|gb|ADQ41815.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 328
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 55/242 (22%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D +GK++L+P+ + FRRLC K+GAD+T +EM + L+ S + LI E E
Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSKFGADVTVTEMVSSKALVLGSAKTKELISFSEEEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ G+Q+ G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++
Sbjct: 62 IRGIQIFGSDPEVMAQSVKILQDEFEYDFIDINMGCPVPKLVKSGEGCALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS P++VK R G +++ F ++ GAS +T+HGRTR Q Y+ +ADW+ I K
Sbjct: 127 KVSRKPVSVKIRKGFDEEDINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEIIRKV 186
Query: 495 AQ 496
+
Sbjct: 187 KE 188
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 51/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G++P V+ + ++L+++ DF+D+N+GCP+ + K G G L++ ++ ++
Sbjct: 64 GIQIFGSDPEVMAQSVKILQDEFEYDFIDINMGCPVPKLVKSGEGCALMKNPSLAAKIVE 123
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +VS P++VK R G +++ ++ YI
Sbjct: 124 EVAKVSRKPVSVKIRKGFDEED-----------------------------INAPEFAYI 154
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++ GAS +T+HGRTR Q Y+ +ADW+ I K + P
Sbjct: 155 --------------------LQESGASFVTVHGRTRAQLYSGKADWEIIRKVKEKVK-IP 193
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ NGDI +E + + + + G+MIGR AL PW+F +IKE
Sbjct: 194 VVANGDITDFESAKRAYEVTRA-DGIMIGRAALGNPWVFLQIKE 236
>gi|146295635|ref|YP_001179406.1| putative TIM-barrel protein, nifR3 family [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409211|gb|ABP66215.1| putative TIM-barrel protein, nifR3 family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 328
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 55/237 (23%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ +GKL+L+P+ + FR LC ++GAD+T +EM A + S + LI E E
Sbjct: 2 LNIKGKLFLAPMAGFTDKVFRSLCSRFGADVTVTEMVSAKAITMGSQKTKELISFSEDEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ GVQ+ G++P+V+ + ++++++ DF+D+N+GCP+ + K G GS L++
Sbjct: 62 IKGVQIFGSDPHVMAEAVKIIQDEFEYDFIDINMGCPVPKVVKSGEGSALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+VS P++VK R G ++N F ++ GAS IT+HGRTR Q Y+ +ADW+ I
Sbjct: 127 KVSRKPVSVKIRKGFDEENINAPEFACIMQESGASFITVHGRTRTQMYSGKADWEII 183
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 8/87 (9%)
Query: 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
++ GAS IT+HGRTR Q Y+ +ADW+ I+ + P+ NGDI+ + ES KK+
Sbjct: 155 MQESGASFITVHGRTRTQMYSGKADWEIIKMVKEKVK-IPVVANGDIVDF----ESAKKA 209
Query: 572 PSIS---GVMIGRGALIKPWIFQEIKE 595
I+ +MIGR AL PW+F +IKE
Sbjct: 210 YEITEADSIMIGRAALGNPWVFLQIKE 236
>gi|116182068|ref|XP_001220883.1| hypothetical protein CHGG_01662 [Chaetomium globosum CBS 148.51]
gi|88185959|gb|EAQ93427.1| hypothetical protein CHGG_01662 [Chaetomium globosum CBS 148.51]
Length = 641
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 124/261 (47%), Gaps = 74/261 (28%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FG Q+ N P+V K T+ L + + + VD+N GCP++ ++K GSGS LL + L+ +
Sbjct: 309 FGAQIAANAPWVAVKATEALSQLLPHLRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERM 368
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
I MN VS +PIT K R G +R+ + T Q
Sbjct: 369 IRGMNAVSGEVPITAKIRMG----------------------------SRDGKLTAQK-- 398
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCA 544
+E+ A L S D RD G + +TLHGRTR QRYTK ADW YI +CA
Sbjct: 399 -LVERLA-LGSED----------LRDMIGAPGCAAVTLHGRTRLQRYTKAADWGYIAECA 446
Query: 545 QLC-----------------------SPAPLY--GNGDILSYEDYTESLKKSPSISGVMI 579
L + +Y GNGD S+ +Y + + + + VMI
Sbjct: 447 ALIKQFNEKSNDLADTIREADENTLPNGGKMYFLGNGDCYSHVEYFDHVDNA-KVDSVMI 505
Query: 580 GRGALIKPWIFQEIKEKKLFD 600
GRGAL+KPW+F+EI++ + D
Sbjct: 506 GRGALVKPWVFEEIEKGQYLD 526
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 58 KGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE- 114
+GQNK R TF C + CK+G++C +HD ++K + DI+
Sbjct: 107 RGQNKEREFGTFSDAQRLCNTIAWTPEFSPRPCKHGDRCNALHDLRKYLKEGRRPDITTF 166
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL------------KEWKNTVGN 160
+C V+ ++G CP G C F SH+DE + +++ +E +
Sbjct: 167 GGKCPVWEKYGKCPSGWRCLFVHSHMDEIKHEDGRSELVLVGDASKAPEGGEEAAGEIKP 226
Query: 161 KTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKA-SKNENKDTDDCCKNQDSKVIE 214
VNM+ ++ DL K EKSE+ + K+ K +K+ K DD D + E
Sbjct: 227 GVVNMVPVGIKYDLSKKRIPLEKSEQYLAWLAKDTKHLAKHYQKHKDDETNPNDYRAHE 285
>gi|403389170|ref|ZP_10931227.1| NifR3 family protein [Clostridium sp. JC122]
Length = 324
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 137/340 (40%), Gaps = 106/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V ++ +R +CK+ G + +EM A L S
Sbjct: 6 LEFENNVFLAPMAGVTDIAYRGICKEMGCGLVYTEMVSAKGLFYGS-------------- 51
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
N VL + + EE+ V +Q
Sbjct: 52 --------RNTEVLMRTS---EEERPV------------------------------AIQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G++P ++ ++ E+ + VDVN+GCP+ I K G GS L++ + +I M
Sbjct: 71 IFGSDPKIMAHACEVFNEREDISIVDVNMGCPVPKIVKNGEGSALMKNPKLASEIIREMK 130
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS+ P+TVK R G +DN F D G I +HGRTR Q Y ADW+ I K
Sbjct: 131 KVSNKPVTVKFRKGFDEDNINAVEFAKYVEDAGVDAIAIHGRTRAQMYNGNADWNIIGKV 190
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 191 KEAVS--------------------------------------------------IPVIG 200
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGD+ SYED + +K+ + G+M+ RGA+ PWIF+EI+
Sbjct: 201 NGDVFSYEDALK-MKELTNCDGIMVARGAMGNPWIFREIQ 239
>gi|289449752|ref|YP_003474753.1| TIM-barrel protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184299|gb|ADC90724.1| TIM-barrel protein, nifR3 family [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 367
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 146/352 (41%), Gaps = 97/352 (27%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATEL-LKSSPQEW 304
+I N+ + + L+PL +LPFR LC+ +GA +TC+E+ A L + W
Sbjct: 24 RIDNTSNPVLSLPSNILLAPLAGASDLPFRHLCQTYGAGLTCTELVSARGLHYAGVAKSW 83
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLL---EEQMAVDFVDVNLGCPIEFIYKQGSG 361
++ E E +QL G +P +L+ E D +D+N+GCP+ + K G+G
Sbjct: 84 RYLRLGEDETPRAIQLFGYDPTDFAAAIELILKTAELPRPDIIDINMGCPVPKVTKTGAG 143
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L+ R L +++ C L +G+ +L
Sbjct: 144 SALMLRPELAA--------KIISACKNTL------------------------NGTDIL- 170
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+T K R G +KD+NI F + GA++IT+HGRTREQ
Sbjct: 171 -------------------VTCKFRRGYNKDSNIAAEFALAMAEAGAAMITVHGRTREQG 211
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y+ ADW+ I + + +H F+ + R
Sbjct: 212 YSGTADWECIAEVVE-------AVHGFLARHR---------------------------- 236
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
SP P+ NGDI+ ++L+ + GVMIGR AL PWIF+EI
Sbjct: 237 -----YSPIPVIANGDIIDGPTARKALETT-GADGVMIGRAALGHPWIFREI 282
>gi|344302898|gb|EGW33172.1| hypothetical protein SPAPADRAFT_60480 [Spathaspora passalidarum
NRRL Y-27907]
Length = 339
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 124/234 (52%), Gaps = 39/234 (16%)
Query: 371 FGVQLCGNNPYVLTKCTQ-LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FGVQ+ + ++ K + + +E V +++N GCPI+ +Y+QG GS LL + + L +
Sbjct: 28 FGVQIAASKHWMAAKAAETIYKETSNVSELNLNCGCPIDLLYRQGQGSALLDQPSRLMRI 87
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQAD 487
+ MN S +P+TVK RTG N + + + ++ + ITLHGR+R+QRYT++AD
Sbjct: 88 LRGMNASSGDIPVTVKIRTGTKDGKNTAKSLVERVLKEGDVAAITLHGRSRQQRYTREAD 147
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
W+YI + Q+ + N+ +++ + +D
Sbjct: 148 WEYISEVGQVVKQWND-----------------------KKEEDKESSD----------- 173
Query: 548 SPAPLY-GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+P + GNGD+ ++ D+ ++ + I VM+ RGALIKPWIF+E++ + D
Sbjct: 174 TPRTFFVGNGDVFTHLDWHTAV-DTDGIDSVMVARGALIKPWIFEEVEAGQYLD 226
>gi|340347248|ref|ZP_08670360.1| tRNA-dihydrouridine synthase [Prevotella dentalis DSM 3688]
gi|433652443|ref|YP_007278822.1| putative TIM-barrel protein, nifR3 family [Prevotella dentalis DSM
3688]
gi|339609818|gb|EGQ14681.1| tRNA-dihydrouridine synthase [Prevotella dentalis DSM 3688]
gi|433302976|gb|AGB28792.1| putative TIM-barrel protein, nifR3 family [Prevotella dentalis DSM
3688]
Length = 334
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 145/335 (43%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR+LCK++GAD+ +E A +++S ++ E E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKLCKRFGADMMYTEFVSADAIIRSIKSTLDKMRIDEDERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ E + D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGRDVEAMVEAAKIV-ESVQPDIIDLNFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I ++V+ ++ P
Sbjct: 121 LML----------------------------------------DITRAVVAAVHT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + N +I + + +D G +T+HGRTR Q YT QADW I + +
Sbjct: 137 VTVKTRLGWDQSNLVITDLAEQLQDCGIQALTIHGRTRAQMYTGQADWTLIGEVKR---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ R P+ GNGDI +
Sbjct: 193 --------NPRLR------------------------------------IPIIGNGDIAT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E+ E+ + + GVMIGR +PWIF+E+K+
Sbjct: 209 PEEAREAFDRY-GVDGVMIGRATFGRPWIFKEVKD 242
>gi|312126436|ref|YP_003991310.1| tim-barrel protein, nifr3 family [Caldicellulosiruptor
hydrothermalis 108]
gi|311776455|gb|ADQ05941.1| TIM-barrel protein, nifR3 family [Caldicellulosiruptor
hydrothermalis 108]
Length = 328
Score = 123 bits (309), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 117/242 (48%), Gaps = 55/242 (22%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D +GK++L+P+ + FRRLC ++GAD+T +EM + L+ S + LI E E
Sbjct: 2 LDIKGKIFLAPMAGFTDKVFRRLCSRFGADVTVTEMVSSKALVLGSAKTKELISFSEEEK 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G++ ++ + ++L+++ DF+D+N+GCP+ + K G GS L++
Sbjct: 62 IRSVQIFGSDAKIMAESVKILQDEFEYDFIDINMGCPVPKVVKSGEGSALMK-------- 113
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K ++EE +
Sbjct: 114 ----NPSLAAK---IVEE----------------------------------------VA 126
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+VS P++VK R G +N F ++ GAS +T+HGRTR Q Y+ +ADW+ I K
Sbjct: 127 KVSRKPVSVKIRKGFDDENINAPEFAYILQESGASFVTVHGRTRAQLYSGKADWEIIRKV 186
Query: 495 AQ 496
+
Sbjct: 187 KE 188
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 51/223 (22%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++ ++ + ++L+++ DF+D+N+GCP+ + K G GS L++ ++ ++
Sbjct: 65 VQIFGSDAKIMAESVKILQDEFEYDFIDINMGCPVPKVVKSGEGSALMKNPSLAAKIVEE 124
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +VS P++VK R G +N ++ YI
Sbjct: 125 VAKVSRKPVSVKIRKGFDDEN-----------------------------INAPEFAYI- 154
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
++ GAS +T+HGRTR Q Y+ +ADW+ I K + P+
Sbjct: 155 -------------------LQESGASFVTVHGRTRAQLYSGKADWEIIRKVKEKVK-IPV 194
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI+ +E + + + + S +MIGR AL PW+F +IKE
Sbjct: 195 IANGDIVDFESAKRAYEVTRADS-IMIGRAALGNPWVFLQIKE 236
>gi|332800061|ref|YP_004461560.1| nifR3 family TIM-barrel protein [Tepidanaerobacter acetatoxydans
Re1]
gi|438003359|ref|YP_007273102.1| tRNA dihydrouridine synthase B [Tepidanaerobacter acetatoxydans
Re1]
gi|332697796|gb|AEE92253.1| TIM-barrel protein, nifR3 family [Tepidanaerobacter acetatoxydans
Re1]
gi|432180153|emb|CCP27126.1| tRNA dihydrouridine synthase B [Tepidanaerobacter acetatoxydans
Re1]
Length = 323
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 136/334 (40%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+P+ + ++PFR +CK+ GAD+ +EM L+ + + L++ + E+ GVQL
Sbjct: 10 LYLAPMAGITDMPFRTICKQMGADVLMTEMISTRGLVYNDNKTAKLLQVNPDENPIGVQL 69
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
GN P + + +++ + DF+++N+GCP I K G G L++
Sbjct: 70 FGNAPKDFEESVKKIDD-LPFDFININMGCPTPKIVKNGDGCALMK-------------- 114
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
DV L S+I S P
Sbjct: 115 -------------------DVKLA----------------------SSIIKVTARASRKP 133
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
++VK R G KD+ F D GAS+I +HGRTRE Y+ +ADWD I+ +
Sbjct: 134 VSVKIRKGWDKDSINAVEFSSAAEDSGASMIIIHGRTREMFYSGKADWDIIKSVKD--AV 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D ++ N GD+ +
Sbjct: 192 DIAVVGN------------------------------------------------GDVFT 203
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED E LKK+ G+MIGRGAL PWIF+E+K
Sbjct: 204 SEDAVEMLKKT-GCDGIMIGRGALGNPWIFREVK 236
>gi|118442953|ref|YP_877134.1| NifR3 family protein [Clostridium novyi NT]
gi|118133409|gb|ABK60453.1| nifR3 family enzyme [Clostridium novyi NT]
Length = 321
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/342 (25%), Positives = 135/342 (39%), Gaps = 106/342 (30%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ + ++L+P+ V ++ +R LCK+ G + +EM A + + L+K
Sbjct: 5 KLSFNNNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYDNENTKKLLK----- 59
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
L EE+ V
Sbjct: 60 --------------------LSEEEKPV------------------------------AA 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ G++P V+ + ++L E V VD+N+GCP I K G GS L++ + ++ M
Sbjct: 70 QIFGSDPKVMARACEILNEDDGVGIVDINMGCPAPKIVKNGEGSALMKNPKLAGEIVREM 129
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS+ P+TVK R G DN +F GA + +HGRTR Q Y +ADWD I K
Sbjct: 130 KKVSNKPVTVKFRKGFDNDNINAVDFAMAMEQAGADAVAIHGRTRAQMYEGKADWDIIRK 189
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 190 VKESVS--------------------------------------------------IPVI 199
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S ED +LK S + G+M+ RGA+ PWIF++I++
Sbjct: 200 GNGDVFSAED-AFALKNSTNCDGIMVARGAMGNPWIFKQIQQ 240
>gi|260903895|ref|ZP_05912217.1| putative TIM-barrel protein, nifR3 family [Brevibacterium linens
BL2]
Length = 396
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 107/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P+ + N FRRLC+++GA + +EM + L++ SP+ +I RHE
Sbjct: 25 IELSSPVVLAPMAGITNTAFRRLCREYGAGLYVTEMVTSRALVERSPKSMRII-RHE--- 80
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
PY + VQ
Sbjct: 81 ----------PYETPRS-----------------------------------------VQ 89
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM- 433
L G +P + + ++L E+ D +D+N GCP+ + ++G GS L + ++ +S++T
Sbjct: 90 LYGVDPVTIGQAVRMLVEEDRADHIDLNFGCPVPKVTRKGGGSALPWKKDLFESIVTTAV 149
Query: 434 --NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +P+TVK R GI KD+ + R+ G + + LHGR+ Y+ QADWD I
Sbjct: 150 TEADRGGIPLTVKMRKGIDKDHQTFLDAGETARNAGVAAVALHGRSAADLYSGQADWDAI 209
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ L P
Sbjct: 210 ARLKD------------------------------------------------HLGDTVP 221
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGDI + ED E ++++ GV+IGRG +PW+F ++
Sbjct: 222 VLGNGDIFAAEDALEMMRRT-GCDGVVIGRGCQGRPWLFGDL 262
>gi|383807485|ref|ZP_09963045.1| transcriptional regulator, NifR3/Smm1 family protein [Candidatus
Aquiluna sp. IMCC13023]
gi|383298839|gb|EIC91454.1| transcriptional regulator, NifR3/Smm1 family protein [Candidatus
Aquiluna sp. IMCC13023]
Length = 373
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 104/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + SEM + L++ + + LI HESE+ VQL
Sbjct: 3 VVLAPMAGITNTAFRRLCREYGNGLFVSEMVTSRALVERTEESMRLIGHHESEEFRSVQL 62
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P +++ ++L ++ D +D+N GCP+ + ++G G+ L ++ LF
Sbjct: 63 YGVDPTTISRAIEMLVQEDRADHIDLNFGCPVAKVTRKGGGAALPWKSELF--------- 113
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I+Q+ + ++P
Sbjct: 114 ------------------------------------------EAIVQAAVKA---AGTIP 128
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI + + + RD G + + LHGRT E Y+ +ADWD I +
Sbjct: 129 VTVKMRKGIDQGHLTFLDAGKAARDAGVTAVALHGRTAEDFYSGRADWDAIAE------- 181
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +P + + GNGDI S
Sbjct: 182 ----LRESLPDVQ--------------------------------------VLGNGDIWS 199
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
D + K+ + G+++GRG L +PW+FQ+++
Sbjct: 200 AHDAVSMMDKT-GVDGIVVGRGCLGRPWLFQDLE 232
>gi|442803624|ref|YP_007371773.1| tRNA-dihydrouridine synthase 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442739474|gb|AGC67163.1| tRNA-dihydrouridine synthase 1 [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 324
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 135/339 (39%), Gaps = 108/339 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++PFR LC + GA +T +EM + + + + L H E VQ+
Sbjct: 16 IFLAPMAGVTDMPFRYLCSRMGAGLTYTEMVSSKGMYYNDKKTELLTVTHPEEAPCAVQI 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ K + L + + +D+N+GCP I K G L++ L
Sbjct: 76 FGSEPEIMAKAAEKLSMRDDIAIIDINMGCPAPKIVKNNEGCALMRNLKL---------- 125
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ I+++V+ + SS P
Sbjct: 126 -----------------------------------------ASEIIKAVV----KASSKP 140
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G ++DN + F + GAS +T+HGRTREQ Y+ +ADWD I + Q S
Sbjct: 141 VTVKFRKGFNEDNAV--EFAKMAEESGASAVTVHGRTREQMYSGKADWDVIARVKQAVS- 197
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI +
Sbjct: 198 -------------------------------------------------VPVIGNGDIFT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
ED E L+K+ VM+GRGA PWIF+ I L+
Sbjct: 209 PEDAREMLEKT-GCDAVMVGRGAQGNPWIFKRILHYILY 246
>gi|291458632|ref|ZP_06598022.1| tRNA-dihydrouridine synthase B [Oribacterium sp. oral taxon 078
str. F0262]
gi|291419165|gb|EFE92884.1| tRNA-dihydrouridine synthase B [Oribacterium sp. oral taxon 078
str. F0262]
Length = 316
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 134/338 (39%), Gaps = 108/338 (31%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K++ +G L L+P+ V +LPFR LC++ G ++C+EM A +L +ES
Sbjct: 5 KLELRGNLVLAPMAGVTDLPFRILCEEQGIALSCTEMVSAKAVL------------YESR 52
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ E I ++G G L V
Sbjct: 53 N-------------------------------------TEAILERGKGESPL------AV 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
QL G++P ++ + LEE+ D +DVN+GCP+ I + G GS L+++ + +I M
Sbjct: 70 QLFGSDPEIMGEIAVRLEERF--DVLDVNMGCPVPKIVRNGEGSALMRKPELAGRIIKAM 127
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
P+TVK R G + F + D GA+ +T+HGRTREQ Y+ +ADW+ +
Sbjct: 128 VSRVHKPVTVKFRKGFSAGESTAPEFAKRMEDAGAAAVTVHGRTREQYYSGKADWEVLRS 187
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 188 VKEAVS--------------------------------------------------IPVI 197
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
GNGD+ S ED L KS + G+ + R PW+ +
Sbjct: 198 GNGDVFSPEDAKRML-KSTGVDGIALARAVRGNPWLIR 234
>gi|226227146|ref|YP_002761252.1| putative tRNA-dihydrouridine synthase [Gemmatimonas aurantiaca
T-27]
gi|226090337|dbj|BAH38782.1| putative tRNA-dihydrouridine synthase [Gemmatimonas aurantiaca
T-27]
Length = 349
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 106/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+P+ V PFRRLC GAD+ V TE L + I+R
Sbjct: 16 LYLAPMAGVSESPFRRLCHAHGADV------VVTEFLSAEG-----IRR----------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N ++K EE+ PI GVQ+ G+ P
Sbjct: 54 --ENEATISKLRFAPEER------------PI-------------------GVQIFGSEP 80
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ L+ + DFVD+N GCP++ + ++ GSG L+ ++++ +I +++ + LP
Sbjct: 81 SAMADAAALVTDMFSPDFVDINFGCPVKKVVRRNGGSGCLKDLDLVEEIIRAVSKATPLP 140
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR+G +++ + +D GA + LH RTR Q Y+ A+WD I + A+
Sbjct: 141 VTVKTRSGWNEEMRDPVGIALRMQDAGAKVFALHARTRTQMYSGSANWDEIARVAEALD- 199
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI +
Sbjct: 200 -------------------------------------------------IPVLGNGDIKT 210
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
D L + + G+MIGRG+ +PW+F++ +
Sbjct: 211 ALDAKRMLDHTKA-DGIMIGRGSYGQPWVFKQTR 243
>gi|440785133|ref|ZP_20962083.1| putative TIM-barrel protein, nifR3 family [Clostridium pasteurianum
DSM 525]
gi|440218505|gb|ELP57725.1| putative TIM-barrel protein, nifR3 family [Clostridium pasteurianum
DSM 525]
Length = 323
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 128/342 (37%), Gaps = 106/342 (30%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
++ + ++L+PL V ++ FR +CK G + +EM A L S LIK E
Sbjct: 5 ELKFYNNVFLAPLAGVTDIIFRGICKDMGCGLVYTEMVSAKALYYGSENTKELIKVSHKE 64
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
VQ+ G+ P V+ K + + +D+N+GCP I K G GS L++ L
Sbjct: 65 SPIAVQIFGSEPMVMAKACDYFNDNKDICLIDINMGCPAPKIVKNGEGSALMKTPEL--- 121
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
NI++ V
Sbjct: 122 ------------------------------------------------AVNIVKEV---- 129
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+ S P+TVK R G N F + D GA +T+HGRTREQ Y +ADW+ I++
Sbjct: 130 KKTSVKPVTVKFRKGFDSSNINAVEFAKRLEDAGADAVTVHGRTREQMYEGKADWNIIKQ 189
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 190 VKEQVS--------------------------------------------------IPVI 199
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI S ED E + + + G+M+ RGAL PWIF+EI +
Sbjct: 200 GNGDIFSAEDALE-MTRETNCDGIMVARGALGNPWIFREINQ 240
>gi|331091971|ref|ZP_08340803.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402870|gb|EGG82437.1| hypothetical protein HMPREF9477_01446 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 321
Score = 119 bits (297), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 86/350 (24%), Positives = 139/350 (39%), Gaps = 112/350 (32%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
I+KI N ++ + + L+P+ V +LPFR LCK+ GA + C EM A + +
Sbjct: 2 ILKIGN-----VELENRYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYKNKNT 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
AL+K H E CP+
Sbjct: 57 QALLKIHPEE------------------------------------CPVSL--------- 71
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
QL G++P V+++ + +EE + +D+N+GCP+ I K G GS L+Q
Sbjct: 72 ----------QLFGSDPDVMSEVAKSIEE-LPFAILDINMGCPVPKIVKNGEGSALMQNP 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ ++ ++ P+TVK R G + ++ G + + +HGRTREQ Y+
Sbjct: 121 KLVEQIVKKVSGAIQKPVTVKIRKGFNDESVNAVEIAKIIEASGGAAVAVHGRTREQYYS 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADWD I + + S
Sbjct: 181 GKADWDIIRQVKEAVS-------------------------------------------- 196
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGD+ +D E ++K + G+MIGRGA PWIF E+
Sbjct: 197 ------IPVIANGDVTCGQDAIE-IQKQTNCDGIMIGRGAQGNPWIFSEL 239
>gi|307564816|ref|ZP_07627344.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
gi|307346538|gb|EFN91847.1| TIM-barrel protein, nifR3 family [Prevotella amnii CRIS 21A-A]
Length = 325
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 142/330 (43%), Gaps = 105/330 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR +CK++GA + +E A ++++ + + ++E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRSMCKRYGAAMVYTEFVSADAIIRNIKSTLSKMVIDDNERPTGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
GNN + + +++EE D +D+N GCP++ + +G+G+GLL+ N P
Sbjct: 73 YGNNVESMVEAAKIVEEAKP-DVIDINFGCPVKKVAGKGAGAGLLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L NI++ V+ +N +P
Sbjct: 121 LLL----------------------------------------NIVREVVKAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + N II + + +D GA +T+HGRTREQ YT +ADW I K A+
Sbjct: 137 VTVKTRLGWDEHNLIITDLAEQIQDCGAKALTIHGRTREQMYTGKADWTLIGKVAK---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
IT+ P+ GNGDI+S
Sbjct: 193 ----------------NPHITI----------------------------PIIGNGDIVS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+D + K + VMIGR PW+F
Sbjct: 209 VKDAYDHFDKY-GVDAVMIGRATFGCPWLF 237
>gi|449491950|ref|XP_004174700.1| PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
[Taeniopygia guttata]
Length = 229
Score = 119 bits (297), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/92 (59%), Positives = 69/92 (75%), Gaps = 3/92 (3%)
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
P RD S LHGR+REQRYT+ ADW YI +CA+L SP PL+GNGDILSYED +++
Sbjct: 55 PHLRDPSGS-SRLHGRSREQRYTRSADWHYIAECARLASPMPLFGNGDILSYEDANRAMQ 113
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+SG+MI RGALIKPW+F EIKE++ +DI
Sbjct: 114 M--GVSGIMIARGALIKPWLFTEIKEQRHWDI 143
>gi|169335415|ref|ZP_02862608.1| hypothetical protein ANASTE_01827 [Anaerofustis stercorihominis DSM
17244]
gi|169258153|gb|EDS72119.1| TIM-barrel protein, nifR3 family [Anaerofustis stercorihominis DSM
17244]
Length = 329
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 141/353 (39%), Gaps = 111/353 (31%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
KIKN+ + + K L+P+ V LP+R ++ G I SEM A L S +
Sbjct: 3 KIKNNYFEDLLKINKAILAPMAGVTTLPYRLFMREMGCKIFISEMVSAKGLYYKSKNTFP 62
Query: 306 LIKRHESE---DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
L++ +E E + G+Q+ G+ P ++ + T+ A DF+D+N+GCP++ I G GS
Sbjct: 63 LMETNELEHKDSVTGIQIFGSEPEIMGEITERYINDTAFDFIDINMGCPMKKIVNNGDGS 122
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
LL+ L +
Sbjct: 123 ALLKD----------------------------------------------------LDK 130
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
AN V+ + SS P++VK R G ++ NII + + D GA +IT+HGRTREQ +
Sbjct: 131 AN---KVVREVKSASSKPVSVKVRLGFNE--NIIEDIIKAIEDGGADMITVHGRTREQVF 185
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
T + D+D I+K + S
Sbjct: 186 TGEVDYDGIKKAKETAS------------------------------------------- 202
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
PL NGD+ +Y E + + + GVMIGRGA P+IF + E
Sbjct: 203 -------VPLIANGDLDNYLKAKEKMDYTGA-DGVMIGRGANYDPFIFSQFNE 247
>gi|392390991|ref|YP_006427594.1| tRNA-U20-dihydrouridine synthase [Ornithobacterium rhinotracheale
DSM 15997]
gi|390522069|gb|AFL97800.1| tRNA-U20-dihydrouridine synthase [Ornithobacterium rhinotracheale
DSM 15997]
Length = 326
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 142/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRR+CK+ GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRVCKENGADLMYSEFISSEGLIRDA------IKSKKKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G +
Sbjct: 68 ------------------------------PI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + + +SLP
Sbjct: 79 EAMALSARIVE-TVKPDLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTESVVKSTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN I+ + +D G +++HGRTR Q Y +ADW I + +
Sbjct: 138 VTVKTRLGWDHDNINIYEVAERLQDVGIQALSIHGRTRAQMYKGEADWSEIARV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K + G+MIGR A+ PWIF+EIK
Sbjct: 210 PEKALE-YKNRYGVDGIMIGRAAIGYPWIFREIK 242
>gi|387819803|ref|YP_005680150.1| tRNA dihydrouridine synthase B [Clostridium botulinum H04402 065]
gi|322807847|emb|CBZ05422.1| tRNA dihydrouridine synthase B [Clostridium botulinum H04402 065]
Length = 323
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 97/225 (43%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPEIMANAVEFFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F GA IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKVMEQSGADAITIHGRTREQMYEGKADWTII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNAVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ + GVM+GRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSAEDAIEMINKT-NCDGVMVGRGAQGNPWIFKQINEK 241
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPEIMANAVEFFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|363897730|ref|ZP_09324268.1| hypothetical protein HMPREF9624_00830 [Oribacterium sp. ACB7]
gi|361958195|gb|EHL11497.1| hypothetical protein HMPREF9624_00830 [Oribacterium sp. ACB7]
Length = 352
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 143/340 (42%), Gaps = 108/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ G + ++P+ V +LP+R LCK+ G +TC+EM A +L + +L+++ E
Sbjct: 43 VQLPGNILMAPMAGVTDLPYRILCKEMGVSLTCTEMVSAKAILYGNKNTDSLLEKGEEPG 102
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQL G++P ++ + + +EE D +DVN+GCP+ + + G GS L++
Sbjct: 103 KRAVQLFGSDPEIMAEMAKRVEEDF--DIIDVNMGCPVPKVVRNGEGSALME-------- 152
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
N P L E+ +L+S++ +
Sbjct: 153 ---NLP---------LAEK-------------------------------VLRSMVKAV- 168
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
S+PITVK R G D+ + +F+ + G S I +HGRTREQ Y +ADW++I +
Sbjct: 169 ---SVPITVKCRLGFTDDHINVLDFVKSAENAGVSAIVVHGRTREQYYRGKADWEWIRRA 225
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +H PL+G
Sbjct: 226 KE-------AVH-------------------------------------------IPLFG 235
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI + ED L S + G+ +GRG P++ + I+
Sbjct: 236 NGDIFTEEDAMAML-LSTGVDGISLGRGVQGNPFLIRRIR 274
>gi|424835875|ref|ZP_18260534.1| dihydrouridine synthase [Clostridium sporogenes PA 3679]
gi|365977745|gb|EHN13843.1| dihydrouridine synthase [Clostridium sporogenes PA 3679]
Length = 323
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 97/225 (43%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPDIMANAVEFFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F GA IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGADAITIHGRTREQMYEGKADWTII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNAVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ + GVM+GRGA PWIF++I EK
Sbjct: 198 IIGNGDVFSAEDAIEMINKT-NCDGVMVGRGAQGNPWIFKQINEK 241
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYGSNNTTELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPDIMANAVEFFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|187777496|ref|ZP_02993969.1| hypothetical protein CLOSPO_01071 [Clostridium sporogenes ATCC
15579]
gi|187774424|gb|EDU38226.1| TIM-barrel protein, nifR3 family [Clostridium sporogenes ATCC
15579]
Length = 323
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 98/225 (43%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ ++ + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPDIMANAVEIFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASQIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F GA IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGADAITIHGRTREQMYEGKADWTII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNAVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ + GVM+GRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSAEDAIEMINKT-NCDGVMVGRGAQGNPWIFKQINEK 241
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYGSNNTTELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ ++ + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPDIMANAVEIFNDNNDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|359776968|ref|ZP_09280268.1| putative tRNA-dihydrouridine synthase [Arthrobacter globiformis
NBRC 12137]
gi|359305822|dbj|GAB14097.1| putative tRNA-dihydrouridine synthase [Arthrobacter globiformis
NBRC 12137]
Length = 393
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 136/334 (40%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + +EM + L++ +P+ +I E E + VQL
Sbjct: 28 VVLAPMAGITNTAFRRLCREYGGGLYVAEMVTSRALVERTPESLRIISHDEDEKVRSVQL 87
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 88 YGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF--------- 138
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I+Q+ + ++ +P
Sbjct: 139 ------------------------------------------TSIVQTAVREASK-GGIP 155
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R GI D+ + RD G + + LHGRT Q Y+ QADW I +
Sbjct: 156 LTIKMRKGIDDDHLTYVDAGRIARDSGVAAVALHGRTAAQFYSGQADWSAIAR------- 208
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +P P+ GNGDI S
Sbjct: 209 ----LREALPDI--------------------------------------PVLGNGDIWS 226
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ I GV+IGRG +PW+F +++
Sbjct: 227 AEDAVRMVRET-GIDGVVIGRGCQGRPWLFGDLQ 259
>gi|26451942|dbj|BAC43063.1| unknown protein [Arabidopsis thaliana]
gi|30017287|gb|AAP12877.1| At4g38890 [Arabidopsis thaliana]
Length = 265
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 98/200 (49%), Gaps = 50/200 (25%)
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
+GCPI+ + + +GS LL + +++++ + + PIT+K RT
Sbjct: 1 MGCPIDMVVNKSAGSALLNKPLRMKNIVEVSSSIVETPITIKVRTAF------------- 47
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
G+ R I + + +WGA+ +T+
Sbjct: 48 ----------FEGKNR--------------------------IDSLIADIGNWGATAVTI 71
Query: 523 HGRTREQRYTKQADWDYIEKCAQ-LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
HGR+R+QRY+K ADWDYI +C + + + GNGD+ SY D+ + P +S MI R
Sbjct: 72 HGRSRQQRYSKSADWDYIYQCTKNATTNLQVIGNGDVYSYLDWNKHKSDCPELSSCMIAR 131
Query: 582 GALIKPWIFQEIKEKKLFDI 601
GALIKPWIF EIKE++ +DI
Sbjct: 132 GALIKPWIFTEIKEQRHWDI 151
>gi|429752723|ref|ZP_19285563.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429175823|gb|EKY17240.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 328
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + +SLP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGDI S
Sbjct: 193 NNPRMH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E K SI G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALEYRNKY-SIDGIMIGRAAIGYPWIFNEIKH 243
>gi|297275877|ref|XP_001085581.2| PREDICTED: tRNA-dihydrouridine synthase 3-like, partial [Macaca
mulatta]
Length = 318
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 32/260 (12%)
Query: 29 ETDKRKLEELEVEDDGTAK----KKFKKNKQVLKGQNKARG---PTFVTKPEDCYCPFLK 81
E + +LE+ + ED T + ++ + ++ +GQNK R PT K + CP L
Sbjct: 71 EAKRIRLEDGQTEDGQTEEAAEPREQPQTQKRARGQNKGRPHVKPTHYDK--NRLCPSLI 128
Query: 82 DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141
+ + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF +HL
Sbjct: 129 QESAAK-CFFGDRCRFLHDVRRYLETKPADLGPRCVLFQTFGRCPYGVTCRFAGAHLGPE 187
Query: 142 GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDT 201
G N+V+E++ + N L ++Q LRK FE++E+ ++ S+ +
Sbjct: 188 GQNLVQEELA--ARGAQPPPVRNGLDKALQQQLRKREVRFERAEQAL--HRFSQGQPPGP 243
Query: 202 DDCCKNQDSKVIEGREEINTPNTDDVIKVQEET-------------KSGPVLDTDIIKIK 248
+ V EG P D+ Q T GP+ D D+++++
Sbjct: 244 TPA-----AAVPEGTAAEGAPRQDNCGAQQVPTGLGTSTPPSSPVRTCGPLTDEDVVRLR 298
Query: 249 NSEKKKIDWQGKLYLSPLTT 268
EKK++D +GKLYL+PLTT
Sbjct: 299 PCEKKRLDIRGKLYLAPLTT 318
>gi|404372914|ref|ZP_10978195.1| nifR3 family putative TIM-barrel protein [Clostridium sp.
7_2_43FAA]
gi|226914289|gb|EEH99490.1| nifR3 family putative TIM-barrel protein [Clostridium sp.
7_2_43FAA]
Length = 328
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 136/341 (39%), Gaps = 107/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V ++ FR LCK+ G + +EM A L + +L++ + E
Sbjct: 6 LEFENNVFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGNENTKSLLRIADEET 65
Query: 315 LFGVQLCGNNPYVLTKCTQ-LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
Q+ GN+P ++ + Q E+ + VD+N+GCP+ I K G GS LL+ L
Sbjct: 66 PVAAQIFGNDPRIMAEVVQRYFNEREDICLVDINMGCPVNKITKNGEGSALLKHPEL--- 122
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
ANI++ +
Sbjct: 123 ------------------------------------------------AANIVREI---- 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS+ P+TVK R G + N F + + G +T+HGRT+EQ Y +ADWD I K
Sbjct: 131 KKVSTKPVTVKFRKGWDEGNINAVEFAKRLEEAGVDAVTVHGRTKEQMYEGKADWDIIGK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S P+
Sbjct: 191 VKDSVS--------------------------------------------------IPVL 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGD+ + ED E LK + G+MI RG++ PWIF++I+
Sbjct: 201 GNGDVFTSEDAIE-LKNKTNCDGIMIARGSMGNPWIFKQIE 240
>gi|302876583|ref|YP_003845216.1| nifR3 family TIM-barrel protein [Clostridium cellulovorans 743B]
gi|307687258|ref|ZP_07629704.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
gi|302579440|gb|ADL53452.1| TIM-barrel protein, nifR3 family [Clostridium cellulovorans 743B]
Length = 321
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/342 (23%), Positives = 135/342 (39%), Gaps = 106/342 (30%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V + PFR LC + G + +EM A L S AL+K
Sbjct: 6 LEFKNNVFLAPMAGVTDSPFRTLCLEQGCGLVYTEMVSAKGLFYGSENTEALLK------ 59
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+++E+ V VQ
Sbjct: 60 -------------------VIDEERPV------------------------------AVQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G +PY++ K + +++ +DVN+GCP I K G GS L++ + ++ +
Sbjct: 71 IFGRDPYIMAKACEYFDKKDEFCIIDVNMGCPAPKIVKNGEGSALMKEPELAYEIVKTLK 130
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+S P+TVK R G +DN F + GA I +HGRTR Q Y +ADW+ I +
Sbjct: 131 NTTSKPVTVKFRKGFDEDNINAVEFAKVIEEAGADAIAVHGRTRAQMYQGKADWNIIAQV 190
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ + P+ G
Sbjct: 191 KKAVT--------------------------------------------------IPVIG 200
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
NGD+ S+ED ++L + G+M+ RG+ PW+F +IK+K
Sbjct: 201 NGDVFSHED-AQNLIHISNCDGIMVARGSQGNPWLFNQIKQK 241
>gi|373111083|ref|ZP_09525343.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus
CCUG 10230]
gi|423135905|ref|ZP_17123550.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus CIP
101113]
gi|371639640|gb|EHO05255.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus CIP
101113]
gi|371641144|gb|EHO06731.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus
CCUG 10230]
Length = 338
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 151/353 (42%), Gaps = 109/353 (30%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
T++IKI N E L L+P+ V + PFRRLCKK GAD+ SE + L++ +
Sbjct: 7 TNMIKIGNIELP----DHPLLLAPMEDVSDPPFRRLCKKHGADLMYSEFISSEGLIRDA- 61
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
++ +M +D D P+
Sbjct: 62 ---------------------------------MKSKMKLDIFDYE--RPV--------- 77
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
G+Q+ G + + + +++E + D VD+N GCP++ + +G+G+G+L+
Sbjct: 78 ----------GIQIFGGDEEAMAESARIVE-TVQPDLVDINFGCPVKKVVSKGAGAGVLK 126
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+++ + + + + LP+TVKTR G +++ I + +D G +T+H RTR Q
Sbjct: 127 DIDLMIRLTKAVVQSTHLPVTVKTRLGWDEESINIDEVAERLQDVGVQALTIHARTRAQM 186
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y +DW +IE+ NN P+ +
Sbjct: 187 YKGHSDWTHIERIK------NN------PRIQ---------------------------- 206
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S + E K++ + G+MIGR A+ PWIF EIK
Sbjct: 207 --------IPIFGNGDIDSPQKALE-YKETFGLDGMMIGRAAIGYPWIFDEIK 250
>gi|398332042|ref|ZP_10516747.1| tRNA-dihydrouridine synthase [Leptospira alexanderi serovar Manhao
3 str. L 60]
Length = 318
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 144/341 (42%), Gaps = 107/341 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKAFKMFRFHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++T+ ++++E + D +D+N+GC + +G+G+GLL++ + +I M + +
Sbjct: 76 RLEIITEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPALAGKIIEAMKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+PIT K R G ++ + G + +T+HGRT+E YT ADWD I
Sbjct: 135 VPITAKIRIGWDSESKNYLEVSKILEESGVNALTVHGRTKEMAYTGLADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + +R P++GNGDI
Sbjct: 188 -------------------------GEVKARRKI------------------PVFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
SYE+ +++ S+ GV+IGR A+ PWIF +IK+++L+
Sbjct: 205 KSYEEANSKMREY-SLDGVLIGRKAIGNPWIFSKIKKEELY 244
>gi|373456867|ref|ZP_09548634.1| TIM-barrel protein, nifR3 family [Caldithrix abyssi DSM 13497]
gi|371718531|gb|EHO40302.1| TIM-barrel protein, nifR3 family [Caldithrix abyssi DSM 13497]
Length = 347
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 135/334 (40%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + PFR +CK+ GAD+ SE + L++ E+E F
Sbjct: 14 LFLAPMENVSDYPFRMICKELGADVVYSEFISSEALIR------------EAEKAF---- 57
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K T +E PI G+Q+ GN
Sbjct: 58 --------LKMTIKAQEH------------PI-------------------GIQIYGNRV 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K QL EE+ DF+D+N GCP++ + +G+G+GLL+ ++ + + SLP
Sbjct: 79 EAMVKAAQLAEEKGP-DFIDINFGCPVKKVALKGAGAGLLRDIPLMVKISAAVARAVSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T KTR G + I + + D G ITLH RTR Q Y QADW++I K + S
Sbjct: 138 VTAKTRLGWDAHSIQIVDVAKRLEDVGIEAITLHARTRAQGYKGQADWEWIRKVKEAVS- 196
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+ +
Sbjct: 197 -------------------------------------------------IPVIGNGDVTT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ + +++ VMIGRGA+ PW+F++ +
Sbjct: 208 PQLAKQMFEQT-GCDAVMIGRGAINNPWLFRDAR 240
>gi|429727233|ref|ZP_19262011.1| TIM-barrel protein, nifR3 family [Prevotella sp. oral taxon 473
str. F0040]
gi|429144584|gb|EKX87694.1| TIM-barrel protein, nifR3 family [Prevotella sp. oral taxon 473
str. F0040]
Length = 344
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/350 (26%), Positives = 150/350 (42%), Gaps = 109/350 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++ FR LC++ GA + SE VA++ L V++
Sbjct: 13 VLLAPMEDVTDIGFRLLCRRLGASMVYSEF-VASDAL--------------------VRM 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ LT C +E+ V +Q+ G +P
Sbjct: 52 VNKSLQKLTVCD---DERPVV-------------------------------IQIYGRDP 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-TCMNEVSS- 438
+ + +++ E+ D +D+N GCP++ + +G+GSG+LQ ++Q +I +N VSS
Sbjct: 78 GAMAEAAEIVVEKAQPDILDLNFGCPVKKVAGKGAGSGMLQTPELMQEIIRAVVNRVSSR 137
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+TVKTR G ++ II + + +D GA +T+HGRTR Q YT +ADW I + +
Sbjct: 138 VPVTVKTRLGWDHEHRIIVDLAERIQDCGAEALTIHGRTRCQMYTGEADWSLIGEVKR-- 195
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
N +H P+ GNGDI
Sbjct: 196 ---NPRMH-------------------------------------------IPIIGNGDI 209
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK---KLFDIYAIV 605
S D ++ + VM+GR +PWIF+EI++ FD+ A V
Sbjct: 210 TSGADALRGFEEY-GVDAVMVGRATFGRPWIFKEIRDTLDGTPFDVSAAV 258
>gi|451817014|ref|YP_007453215.1| tRNA-dihydrouridine synthase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451782993|gb|AGF53961.1| tRNA-dihydrouridine synthase B [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 321
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 131/340 (38%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ + ++L+P+ V ++ FR LCK+ G + +EM A L S L++
Sbjct: 6 LTFDNNVFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTQTLLR------ 59
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ EE+ V VQ
Sbjct: 60 -------------------IAEEEKPV------------------------------AVQ 70
Query: 375 LCGNNPYVLTK-CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+ G P ++ C Q L + + +D+N+GCP I K G GS L++ N+ ++ +
Sbjct: 71 IFGREPEIMASICEQYLNYRDDICIIDINMGCPAPKIVKNGEGSALMKEPNLAYDIVKAI 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
++S P+TVK R G +DN F + GA IT+HGRTR+Q Y ADWD I+K
Sbjct: 131 KKISKKPVTVKFRKGFDEDNINAVEFANIMEEAGADAITVHGRTRKQMYQGVADWDIIKK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S P+
Sbjct: 191 VKDTVS--------------------------------------------------IPVI 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ S ED + +KK + G+MI RG+ PWIF+EI
Sbjct: 201 GNGDVFSTEDAIK-IKKITNCDGIMIARGSQGNPWIFREI 239
>gi|378548747|ref|ZP_09823963.1| hypothetical protein CCH26_01622 [Citricoccus sp. CH26A]
Length = 399
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 134/334 (40%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + SEM A L++ P+ +I E VQ+
Sbjct: 34 VVLAPMAGITNTAFRRLCREYGGGLYVSEMVTARALVERRPESLRIIHHDPDETPRSVQV 93
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+P + ++L E+ D VD+N GCP+ + K+G GS L ++ LF
Sbjct: 94 YSVDPVTTGQAVRMLVEEDRADHVDLNFGCPVPKVTKRGGGSALPWKSELF--------- 144
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
A+I+ + + ++ +P
Sbjct: 145 ------------------------------------------ASIVGAAVREASK-KDIP 161
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI +D+ + RD G + + LHGRT EQ Y+ ADWD I +
Sbjct: 162 VTVKMRRGIDEDHLTYLDAGRTARDLGVAAVALHGRTMEQHYSGTADWDSIAR------- 214
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +P P+ GNGDI S
Sbjct: 215 ----LREALPDI--------------------------------------PVLGNGDIWS 232
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ + GV+IGRG +PW+F +++
Sbjct: 233 AEDAIAMVRQT-GVDGVVIGRGCQGRPWLFGDLQ 265
>gi|423132415|ref|ZP_17120065.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus
CCUG 12901]
gi|371639486|gb|EHO05102.1| nifR3 family putative TIM-barrel protein [Myroides odoratimimus
CCUG 12901]
Length = 338
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 90/353 (25%), Positives = 150/353 (42%), Gaps = 109/353 (30%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
T++IKI N E L L+P+ V + PFRRLCKK GAD+ SE + L++ +
Sbjct: 7 TNMIKIGNIELP----DHPLLLAPMEDVSDPPFRRLCKKHGADLMYSEFISSEGLIRDA- 61
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
++ +M +D D P+
Sbjct: 62 ---------------------------------MKSKMKLDIFDYE--RPV--------- 77
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
G+Q+ G + + + +++E + D VD+N GCP++ + +G+G+G+L+
Sbjct: 78 ----------GIQIFGGDEEAMAESARIVE-TVQPDLVDINFGCPVKKVVSKGAGAGVLK 126
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+++ + + + LP+TVKTR G +++ I + +D G +T+H RTR Q
Sbjct: 127 DIDLMIRLTKAVVNSTHLPVTVKTRLGWDEESINIDEVAERLQDVGVQALTIHARTRAQM 186
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
Y +DW +IE+ NN P+ +
Sbjct: 187 YKGHSDWTHIERIK------NN------PRIQ---------------------------- 206
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S + E K++ + G+MIGR A+ PWIF EIK
Sbjct: 207 --------IPIFGNGDIDSPQKALE-YKETFGLDGMMIGRAAIGYPWIFDEIK 250
>gi|163815371|ref|ZP_02206746.1| hypothetical protein COPEUT_01536 [Coprococcus eutactus ATCC 27759]
gi|158449345|gb|EDP26340.1| TIM-barrel protein, nifR3 family [Coprococcus eutactus ATCC 27759]
Length = 324
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/343 (24%), Positives = 142/343 (41%), Gaps = 107/343 (31%)
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
+K +D++ KL L+P+ V + PFR LCK+ G DI SEM A +
Sbjct: 2 EKFMDFRDKLILAPMAGVCDQPFRLLCKEQGCDILYSEMVSAKAI--------------- 46
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
Y K T+ L +A+D +R F
Sbjct: 47 --------------YYNNKNTKPL---LAMD-----------------------EREKPF 66
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+QL G++P ++ + + +E F+D+N+GCP+ + G GS L++ ++ ++
Sbjct: 67 GLQLFGSDPVIMAEMAKKIEGNGY-SFIDINMGCPVPKVVNNGEGSALMKDPLLVGRIVE 125
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ S+P+T+K R+G ++ ++ GA+ + +HGRTR+Q Y ADWD I
Sbjct: 126 TVANAISIPLTIKIRSGFDPEHINAPEIAHIAQESGAAAVAVHGRTRQQYYQGHADWDVI 185
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ Q+C+ P
Sbjct: 186 ARVKQVCN--------------------------------------------------IP 195
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGDI + +D + ++ G MIGRGA PWIF+++K
Sbjct: 196 VIGNGDINTPKDIID-MRNQTDCDGFMIGRGARGNPWIFRDMK 237
>gi|299142013|ref|ZP_07035147.1| dehydrogenase [Prevotella oris C735]
gi|298576475|gb|EFI48347.1| dehydrogenase [Prevotella oris C735]
Length = 336
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 147/343 (42%), Gaps = 106/343 (30%)
Query: 254 KIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ + L+L+P+ V ++ FR LCK++GA + +E A +++S + +++
Sbjct: 5 KLDFGERPLFLAPMEDVTDIGFRMLCKRYGAAMVYTEFVSADAIIRSIKSTLDKMTINDA 64
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E G+Q+ G N + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+
Sbjct: 65 ERPVGIQIYGRNVESMVEAAKIV-EQVKPDLIDLNFGCPVKKVAGKGAGSGMLR------ 117
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
N P +L +I ++V+
Sbjct: 118 -----NIPLLL----------------------------------------DITRNVVKA 132
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ S P+TVKTR G D+ II + + +D G +T+HGRTR Q YT +ADW I
Sbjct: 133 V----STPVTVKTRLGWDNDSLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIG 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
K + N IH P+
Sbjct: 189 KV-----KSNPRIH-------------------------------------------IPI 200
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI + E+ + + VM+GR +PW+F+E+++
Sbjct: 201 IGNGDITTPEEAKRAFDDY-GVDAVMVGRATFGRPWVFKEMRD 242
>gi|373460962|ref|ZP_09552711.1| nifR3 family putative TIM-barrel protein [Prevotella maculosa OT
289]
gi|371954451|gb|EHO72263.1| nifR3 family putative TIM-barrel protein [Prevotella maculosa OT
289]
Length = 327
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 147/343 (42%), Gaps = 106/343 (30%)
Query: 254 KIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
KID+ + ++L+P+ V ++ FR LCK++GA + +E A +++S I+ +++
Sbjct: 5 KIDFGERPIFLAPMEDVTDIGFRMLCKRYGAAMVYTEFVSADAIVRSIKSTLNKIEINDA 64
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E GVQ+ G N + + +Q++ ++ D +D+N GCP++ + +G+GSG+L+
Sbjct: 65 ERPIGVQIYGRNVESMVQASQII-SRVKPDLIDLNFGCPVKKVAGKGAGSGMLK------ 117
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
N P +L D+ N++QSV
Sbjct: 118 -----NVPLLL----------------DIT--------------------RNVVQSV--- 133
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+P+TVKTR G D+ II + +D G +T+HGRTR Q YT ADW I
Sbjct: 134 -----DVPVTVKTRLGWDNDHLIITELAEQLQDCGVQALTIHGRTRAQMYTGAADWRLIG 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + N IH P+
Sbjct: 189 EVKR-----NPRIH-------------------------------------------IPI 200
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI + E+ + + VM+GR +PWIF+E+++
Sbjct: 201 IGNGDISTPEEAKRAFDDY-GVDAVMVGRATFGRPWIFKEMRD 242
>gi|282858670|ref|ZP_06267828.1| TIM-barrel protein, nifR3 family [Prevotella bivia JCVIHMP010]
gi|424900061|ref|ZP_18323603.1| putative TIM-barrel protein, nifR3 family [Prevotella bivia DSM
20514]
gi|282588588|gb|EFB93735.1| TIM-barrel protein, nifR3 family [Prevotella bivia JCVIHMP010]
gi|388592261|gb|EIM32500.1| putative TIM-barrel protein, nifR3 family [Prevotella bivia DSM
20514]
Length = 325
Score = 116 bits (290), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 105/340 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + + E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRYGAAMVYTEFVSADAIIRSIKSTLSKMVIDDEERPTGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
GNN + + +++EE D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGNNVESMVEAAKIVEEAKP-DVIDINFGCPVKKVAGKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N +P
Sbjct: 121 LLL----------------------------------------DITREVVKAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++N +I + +D GA +T+HGRTR Q YT ADW I + +
Sbjct: 137 VTVKTRLGWDENNLVITELAEQIQDCGAKALTIHGRTRAQMYTGNADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+D E K + VMIGR PW+F + ++ D
Sbjct: 209 VKDAYEHFDKY-GVDAVMIGRATFGCPWLFSKEQDALTLD 247
>gi|295093088|emb|CBK82179.1| tRNA-U20-dihydrouridine synthase [Coprococcus sp. ART55/1]
Length = 322
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D++ KL L+P+ V + PFR LCK+ G DI SEM A +
Sbjct: 1 MDFRDKLILAPMAGVCDQPFRLLCKEQGCDILYSEMVSAKAI------------------ 42
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
Y K T+ L +A+D +R FG+Q
Sbjct: 43 -----------YYKNKNTKPL---LAMD-----------------------EREKPFGLQ 65
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++ + + +E F+DVN+GCP+ + G GS L++ ++ ++ M
Sbjct: 66 LFGSDPEIMAEMAKRIESNGY-SFIDVNMGCPVPKVVNNGEGSALMKDPVLVGRIVEAMA 124
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ S+P+T+K R+G ++ ++ GA+ + +HGRTR+Q Y ADW I +
Sbjct: 125 KAISIPLTIKIRSGFDSEHINAPEIAHIAQESGAAAVAVHGRTRQQYYQGHADWSVIARV 184
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ C II P+ G
Sbjct: 185 KEAC-----II---------------------------------------------PIIG 194
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI + +D + ++ + G MIGRGA PWIF+++K
Sbjct: 195 NGDINTPQDIID-MRAQTNCDGFMIGRGARGNPWIFRDMK 233
>gi|405947256|gb|EKC17796.1| tRNA-dihydrouridine synthase 3-like protein [Crassostrea gigas]
Length = 144
Score = 115 bits (289), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/80 (62%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Query: 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
LHGR+REQRYT+ ADWDYI +CA+ P P++GNGDILSYED LK + ++G M+ R
Sbjct: 4 LHGRSREQRYTRLADWDYINQCAEAGKPMPVFGNGDILSYEDLDRHLKNT-QVTGCMVAR 62
Query: 582 GALIKPWIFQEIKEKKLFDI 601
GALIKPWIF E+KEK+ +DI
Sbjct: 63 GALIKPWIFTELKEKRHWDI 82
>gi|302345940|ref|YP_003814293.1| TIM-barrel protein, nifR3 family [Prevotella melaninogenica ATCC
25845]
gi|302150111|gb|ADK96373.1| TIM-barrel protein, nifR3 family [Prevotella melaninogenica ATCC
25845]
Length = 318
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 143/338 (42%), Gaps = 106/338 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLSKLVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N P
Sbjct: 121 LLL----------------------------------------DITREVVKAVNT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNDNLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
E+ E + + VMIGR PW+F + EK+L
Sbjct: 209 IEEAHEKFDRY-GVDAVMIGRATFGCPWLFNQ-GEKQL 244
>gi|228473706|ref|ZP_04058454.1| tRNA-dihydrouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
gi|228274853|gb|EEK13670.1| tRNA-dihydrouridine synthase B [Capnocytophaga gingivalis ATCC
33624]
Length = 324
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCKK+GAD+ SE + L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRRLCKKYGADMLYSEFISSEGLIRDAIKSRKKLDIFDDERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++ E ++ D VD+N GCP++ + +G+G+ +L+ +L
Sbjct: 74 FGGDEEAMALSARIV-ETVSPDVVDINFGCPVKKVVAKGAGAAVLKDIDLM--------- 123
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ Q+V+ + LP
Sbjct: 124 ------------------------------------------VRLTQAVVKS----THLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + +D G +++H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDSETINIEEVAERLQDVGIQALSIHARTRVQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K+ + G+MIGR A+ PWIFQEIK
Sbjct: 210 PEKALE-YKERYGVDGIMIGRAAIGYPWIFQEIK 242
>gi|163841639|ref|YP_001626044.1| tRNA-dihydrouridine synthase [Renibacterium salmoninarum ATCC
33209]
gi|162955115|gb|ABY24630.1| tRNA-dihydrouridine synthase [Renibacterium salmoninarum ATCC
33209]
Length = 393
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 140/354 (39%), Gaps = 106/354 (29%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
TD +++ I + L+P+ + N FRRLC+++G + +EM + L++ +P
Sbjct: 10 TDRLELPPLRLGNITVDTPVVLAPMAGITNTAFRRLCREYGGGLYVAEMVTSRALVERTP 69
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ +I E E + VQL G +P + K ++L E+ D +D+N GCP+ + ++G G
Sbjct: 70 ESLRIISHDEDEKVRSVQLYGVDPITVGKAVRMLVEEDHADHIDLNFGCPVAKVTRRGGG 129
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
+ L + LF
Sbjct: 130 AALPWKTELF-------------------------------------------------- 139
Query: 422 RANILQSVITCMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
A+I++ T + E S +P+T+K R GI D+ RD G + + LHGRT
Sbjct: 140 -ASIVR---TAVREASKGDIPLTIKMRKGIDDDHLTYLEAGKIARDSGVAAVALHGRTAS 195
Query: 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539
Q Y+ ADW I R RE
Sbjct: 196 QFYSGTADWSAI--------------------------------ARLREA---------- 213
Query: 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ P+ GNGDI S ED ++++ I GV+IGRG +PW+F ++
Sbjct: 214 -------VTDIPVLGNGDIWSAEDAIRMVRET-GIDGVVIGRGCQGRPWLFGDL 259
>gi|393778666|ref|ZP_10366930.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392611642|gb|EIW94374.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 327
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E +E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKASE-YRNTYGVDGIMIGRAAIGYPWIFNEIK 242
>gi|154489885|ref|ZP_02030146.1| hypothetical protein PARMER_00114 [Parabacteroides merdae ATCC
43184]
gi|423346346|ref|ZP_17324034.1| hypothetical protein HMPREF1060_01706 [Parabacteroides merdae
CL03T12C32]
gi|423722902|ref|ZP_17697055.1| hypothetical protein HMPREF1078_01115 [Parabacteroides merdae
CL09T00C40]
gi|154089327|gb|EDN88371.1| TIM-barrel protein, nifR3 family [Parabacteroides merdae ATCC
43184]
gi|409221144|gb|EKN14097.1| hypothetical protein HMPREF1060_01706 [Parabacteroides merdae
CL03T12C32]
gi|409242175|gb|EKN34940.1| hypothetical protein HMPREF1078_01115 [Parabacteroides merdae
CL09T00C40]
Length = 343
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 143/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E A L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVADEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + Q+ E D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGRDVPTMVEAAQICEAAHP-DILDINFGCPVKRVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N +P
Sbjct: 121 LML----------------------------------------DITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G + +++HGRTR Q YT +ADW I +
Sbjct: 137 VTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRIQ------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + VMIGRG++ +PWIF+E++
Sbjct: 209 AEICKQRFEQY-GVDAVMIGRGSIGRPWIFREVR 241
>gi|126696436|ref|YP_001091322.1| nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. MIT 9301]
gi|126543479|gb|ABO17721.1| putative nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. MIT 9301]
Length = 335
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/338 (27%), Positives = 141/338 (41%), Gaps = 111/338 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ K+ LSPL V ++ FRRL +KW + + +EM AT L K +
Sbjct: 17 KSKVMLSPLAGVTDIIFRRLVRKWAPNSLLFTEMINATSLKKG----------------Y 60
Query: 317 GVQLCGNNPYVLTKCTQL-LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
G Q K Q+ LEE PI GVQ+
Sbjct: 61 GTQ----------KINQIDLEE------------GPI-------------------GVQI 79
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
N PY +++ + E+ +D+N+GCP++ I K+G GS L++ + ++ + +
Sbjct: 80 FDNRPYAVSEAAKQAEDSGAF-LIDINMGCPVKKIAKKGGGSALIKDRKLAIELVKNVVK 138
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
+P+TVKTR G I +F+ K +D GA++ITLHGRTR+Q ++ ++DW+ I +
Sbjct: 139 AVRVPVTVKTRLGWDSKEENIEDFLFKLQDAGATMITLHGRTRKQGFSGKSDWEMIGRLK 198
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+L P+ N
Sbjct: 199 KLLE--------------------------------------------------IPVIAN 208
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GDI + +D LKK+ + GVMIGRG L PW EI
Sbjct: 209 GDIKNPDDALNCLKKTNA-DGVMIGRGILGSPWKIGEI 245
>gi|429755470|ref|ZP_19288122.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|429174208|gb|EKY15694.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 327
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E +E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKASE-YRNTYGVDGIMIGRAAIGYPWIFNEIKH 243
>gi|402831040|ref|ZP_10879733.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. CM59]
gi|402283089|gb|EJU31611.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. CM59]
Length = 324
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 134/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCKK GAD+ SE + L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRRLCKKHGADMLYSEFISSEGLIRDAIKSRKKLDIFDDERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++ E ++ D VD+N GCP++ + +G+G+ +L+ +L
Sbjct: 74 FGGDEEAMALSARIV-ETVSPDVVDINFGCPVKKVVAKGAGAAVLKDIDLM--------- 123
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ Q+V+ + LP
Sbjct: 124 ------------------------------------------VRLTQAVVKS----THLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D I + +D G +++H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDSDTINIEEVAERLQDVGIQALSIHARTRVQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 ENPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K + G+MIGR A+ PWIFQEIK
Sbjct: 210 PEKAFE-YKNKYGVDGIMIGRAAIGYPWIFQEIK 242
>gi|423329624|ref|ZP_17307430.1| hypothetical protein HMPREF9711_03004 [Myroides odoratimimus CCUG
3837]
gi|404603252|gb|EKB02927.1| hypothetical protein HMPREF9711_03004 [Myroides odoratimimus CCUG
3837]
Length = 330
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 149/351 (42%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N E L L+P+ V + PFRRLCKK GAD+ SE + L++ +
Sbjct: 1 MIKIGNIELP----DHPLLLAPMEDVSDPPFRRLCKKHGADLMYSEFISSEGLIRDA--- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ +M +D D P+
Sbjct: 54 -------------------------------MKSKMKLDIFDYE--RPV----------- 69
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + + +++E + D VD+N GCP++ + +G+G+G+L+
Sbjct: 70 --------GIQIFGGDEEAMAESARIVE-TVQPDLVDINFGCPVKKVVSKGAGAGVLKDI 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + + LP+TVKTR G +++ I + +D G +T+H RTR Q Y
Sbjct: 121 DLMIRLTKAVVQSTHLPVTVKTRLGWDEESINIDEVAERLQDVGVQALTIHARTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+DW +IE+ NN P+ +
Sbjct: 181 GHSDWTHIERIK------NN------PRIQ------------------------------ 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S + E K++ + G+MIGR A+ PWIF EIK
Sbjct: 199 ------IPIFGNGDIDSPQKALE-YKETFGLDGMMIGRAAIGYPWIFDEIK 242
>gi|358067282|ref|ZP_09153763.1| hypothetical protein HMPREF9333_00644 [Johnsonella ignava ATCC
51276]
gi|356694454|gb|EHI56114.1| hypothetical protein HMPREF9333_00644 [Johnsonella ignava ATCC
51276]
Length = 321
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 91/341 (26%), Positives = 142/341 (41%), Gaps = 111/341 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ +G L L P+ VG+LPFR+LC++ G +TC+EM A LL ++ L++ + E
Sbjct: 10 VHIKGGLCLGPMAGVGDLPFRKLCREEGCGLTCTEMVSAKALLYNNKNTEKLLEIEKDEH 69
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQL G++P +LT+ LEE M D +D N+GCP+ + K GS L++
Sbjct: 70 PVAVQLFGSDPDILTEMALRLEE-MDFDIIDFNMGCPVNKVVKNNEGSALMK-------- 120
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + K IL+S+ + +
Sbjct: 121 ----NPKLSEK---------------------------------------ILKSMASRLK 137
Query: 435 EVSSLPITVKTRTGIHKDN-NIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIE 492
+ P+TVK R G ++DN N + + K ++ G S I +H RTREQ Y+ +ADW I
Sbjct: 138 K----PLTVKIRKGFNEDNVNAVE--IAKIAEYAGVSAIAVHARTREQFYSGKADWSVIR 191
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
K + + P+
Sbjct: 192 KVKEAVN--------------------------------------------------IPV 201
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI S ++ + ++ G+MI R A PWIF++I
Sbjct: 202 IGNGDIFSGKEAIDMFNET-GCDGIMIARAARGTPWIFRQI 241
>gi|288800405|ref|ZP_06405863.1| TIM-barrel protein, putative, NifR3 family [Prevotella sp. oral
taxon 299 str. F0039]
gi|288332618|gb|EFC71098.1| TIM-barrel protein, putative, NifR3 family [Prevotella sp. oral
taxon 299 str. F0039]
Length = 333
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 141/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A L+++ + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAEALVRNIKSTINKLSIADSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ++ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVESMVEAAKIV-EQVSPDVIDLNFGCPVKKVASKGAGSGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ + P
Sbjct: 121 LML----------------------------------------DITREVVKAVKT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G +T+HGRTR Q YT ADW I++ +
Sbjct: 137 VTVKTRLGWDSENLVITTLAEQLQDCGIEALTIHGRTRAQMYTGNADWSLIKEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
DN IH P+ GNGDI +
Sbjct: 192 DNPRIH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E+ + ++ + VM+GR +PW+F+E+ E
Sbjct: 209 AEEAKMAFEQY-GVDAVMVGRATFGRPWVFKEMNE 242
>gi|213962326|ref|ZP_03390589.1| tRNA-dihydrouridine synthase B [Capnocytophaga sputigena Capno]
gi|213954992|gb|EEB66311.1| tRNA-dihydrouridine synthase B [Capnocytophaga sputigena Capno]
Length = 326
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + ++LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTTLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGDI S
Sbjct: 193 NNPRMH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E + + I G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALE-YRNTYGIDGIMIGRAAIGYPWIFNEIKH 243
>gi|399926332|ref|ZP_10783690.1| tRNA-dihydrouridine synthase [Myroides injenensis M09-0166]
Length = 330
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 142/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCKK GAD+ SE + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKKHGADLMYSEFISSEGLIRDA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ +M +D D P+ G+Q+ G +
Sbjct: 54 --------------MKSKMKLDIFDYE--RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + + + LP
Sbjct: 79 EAMAQSARIVE-TVQPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVDSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G +T+H RTR Q Y +DW +IE+
Sbjct: 138 VTVKTRLGWDEESINIDEVAERLQDVGIQALTVHARTRSQMYKGHSDWTHIERIK----- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN QR P++GNGDI S
Sbjct: 193 -NN-------------------------QRIQ-----------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E K++ + G+MIGR A+ PWIF EIK
Sbjct: 210 PQKALE-YKETFGLDGMMIGRAAIGYPWIFDEIKH 243
>gi|325281330|ref|YP_004253872.1| TIM-barrel protein, nifR3 family [Odoribacter splanchnicus DSM
20712]
gi|324313139|gb|ADY33692.1| TIM-barrel protein, nifR3 family [Odoribacter splanchnicus DSM
20712]
Length = 333
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 142/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V N PFR+ CKK+GAD SE A L++S + + E+E +Q+
Sbjct: 13 LILAPMEDVTNPPFRKFCKKYGADWLYSEFVSADALVRSVNKSLKKLTIDETERPVTIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++EE + DF+D+N GCP++ + ++G+G+G+L+ + P
Sbjct: 73 YGRFIDSMVEAAKIVEE-VRPDFIDINFGCPVKRVAQKGAGAGMLK-----------DIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ Q I+Q+V +P
Sbjct: 121 LMVEMTRQ------------------------------------IVQAV--------KIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T KTR G ++ II + + +D G + +HGRTR Q Y+ +ADW+ I +
Sbjct: 137 VTAKTRLGWDCEHIIIEDIAERLQDVGIQALAIHGRTRSQMYSGEADWEPIARVK----- 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGDI S
Sbjct: 192 -NN------PRIK------------------------------------IPILGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E+ ++ + GVMIGR + PWIF++I+
Sbjct: 209 PEKAKEAFERY-GVDGVMIGRATIGHPWIFKQIR 241
>gi|429749154|ref|ZP_19282294.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429168923|gb|EKY10724.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 327
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + PFRRLCK+ GAD+ SE + L++ + IK + D+F +
Sbjct: 14 VLLAPMEDVSDPPFRRLCKQHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + +SLP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV------ 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN QR P++GNGDI S
Sbjct: 192 KNN-------------------------QRIV-----------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K + G+MIGR A+ PWIF+EIK
Sbjct: 210 AEKALEYRNKY-GVDGIMIGRAAIGYPWIFEEIK 242
>gi|374598969|ref|ZP_09671971.1| tRNA-U20-dihydrouridine synthase [Myroides odoratus DSM 2801]
gi|423322839|ref|ZP_17300681.1| hypothetical protein HMPREF9716_00038 [Myroides odoratimimus CIP
103059]
gi|373910439|gb|EHQ42288.1| tRNA-U20-dihydrouridine synthase [Myroides odoratus DSM 2801]
gi|404610066|gb|EKB09422.1| hypothetical protein HMPREF9716_00038 [Myroides odoratimimus CIP
103059]
Length = 330
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 141/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCKK GAD+ SE + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKKHGADLMYSEFISSEGLIRDA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ +M +D D P+ G+Q+ G +
Sbjct: 54 --------------MKSKMKLDIFDYE--RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + +SLP
Sbjct: 79 EAMAMSARIVE-TVRPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMIRLTKAVVNSTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G +T+H RTR Q Y +DW +IE+ +
Sbjct: 138 VTVKTRLGWDEESINIDEVAERLQDVGVQALTIHARTRAQMYKGHSDWTHIERI-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N+ I P++GNGDI S
Sbjct: 193 NNSRIK-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E K+ + G+MIGR A+ PWIF EIK
Sbjct: 210 PQKALE-YKEKFGLDGMMIGRAAIGYPWIFDEIK 242
>gi|291547778|emb|CBL20886.1| tRNA-U20-dihydrouridine synthase [Ruminococcus sp. SR1/5]
Length = 324
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/334 (26%), Positives = 132/334 (39%), Gaps = 108/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+P+ V +L FRRLCK+ GA + C EM A + + AL++ E +QL
Sbjct: 16 FVLAPMAGVTDLAFRRLCKEQGAGLICMEMVSAKAISFHNKNTEALMEIDPGEHPVSMQL 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ + + +EE+ D +D+N+GCP+ + G GS LL
Sbjct: 76 FGSEPDLMAEVAKSIEER-PFDILDINMGCPVPKVVNNGEGSALL--------------- 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K QL+EE I + SG+ S P
Sbjct: 120 ----KDPQLIEE-----------------IVRSVSGA-------------------VSKP 139
Query: 441 ITVKTRTGIHKDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+TVK R G ++ + + + D GA+ I +HGRTR+Q Y+ QADWD I + + +
Sbjct: 140 VTVKVRIGFDENTPVDVVEIAKRVEDAGAAAIAVHGRTRQQYYSGQADWDAIRRVKEAVT 199
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGDI+
Sbjct: 200 --------------------------------------------------IPVIGNGDIV 209
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S E E++ K VMIGR PWIF+E+
Sbjct: 210 SPET-AEAMFKETGCDAVMIGRAVRGNPWIFREL 242
>gi|288803773|ref|ZP_06409201.1| TIM-barrel protein, putative, NifR3 family [Prevotella
melaninogenica D18]
gi|288333760|gb|EFC72207.1| TIM-barrel protein, putative, NifR3 family [Prevotella
melaninogenica D18]
Length = 319
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 142/338 (42%), Gaps = 106/338 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRSIKSTLSKLVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N P
Sbjct: 121 LLL----------------------------------------DITREVVKAVNT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNDNLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
E+ E + VMIGR PW+F + EK+L
Sbjct: 209 IEEAHEKFDHY-GVDAVMIGRATFGCPWLFNQ-GEKQL 244
>gi|429747745|ref|ZP_19280993.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429162424|gb|EKY04745.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 380
str. F0488]
Length = 327
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALE-YRNTYGVDGIMIGRAAIGYPWIFNEIK 242
>gi|315224769|ref|ZP_07866591.1| tRNA-dihydrouridine synthase B [Capnocytophaga ochracea F0287]
gi|420160244|ref|ZP_14667029.1| TIM-barrel protein, nifR3 family [Capnocytophaga ochracea str. Holt
25]
gi|314945262|gb|EFS97289.1| tRNA-dihydrouridine synthase B [Capnocytophaga ochracea F0287]
gi|394760824|gb|EJF43315.1| TIM-barrel protein, nifR3 family [Capnocytophaga ochracea str. Holt
25]
Length = 327
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALE-YRNTYGVDGIMIGRAAIGYPWIFNEIK 242
>gi|256819324|ref|YP_003140603.1| nifR3 family TIM-barrel protein [Capnocytophaga ochracea DSM 7271]
gi|256580907|gb|ACU92042.1| TIM-barrel protein, nifR3 family [Capnocytophaga ochracea DSM 7271]
Length = 327
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALE-YRNTYGVDGIMIGRAAIGYPWIFNEIKH 243
>gi|325860196|ref|ZP_08173321.1| TIM-barrel protein, nifR3 family [Prevotella denticola CRIS 18C-A]
gi|325482283|gb|EGC85291.1| TIM-barrel protein, nifR3 family [Prevotella denticola CRIS 18C-A]
Length = 319
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 138/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAIIRSIRSTLSKMVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAARIV-EQAKPDVIDINFGCPVKKVAGKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ + S+P
Sbjct: 121 LLL----------------------------------------EITREVVKAV----SIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G KDN +I + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDKDNLVIADLAEQLQDCGIQALTIHGRTRSQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ E + + VMIGR PWIF++
Sbjct: 209 VREAGEKFDRY-GVDAVMIGRATFGCPWIFRQ 239
>gi|284048925|ref|YP_003399264.1| nifR3 family TIM-barrel protein [Acidaminococcus fermentans DSM
20731]
gi|283953146|gb|ADB47949.1| TIM-barrel protein, nifR3 family [Acidaminococcus fermentans DSM
20731]
Length = 331
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/337 (26%), Positives = 131/337 (38%), Gaps = 107/337 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
Q + L+P+ V +LPFR +C++ GAD T SEM A LL +P+ +A+++ E
Sbjct: 16 QLPIALAPMAGVTDLPFRVICRELGADYTVSEMVSAKALLFKNPKTFAMLEVDPREHPVA 75
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
+QL G+ P L K +++ E A D +D N+GCP+ I G GS L++
Sbjct: 76 IQLFGSVPEELVKGAKIVAEHGA-DIIDFNMGCPVHKIVANGEGSALMK----------- 123
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+P C L VD VD
Sbjct: 124 -DPERAYACLAAL-----VDAVD------------------------------------- 140
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
P+TVK R G +D+ G + + +HGRTR Q Y+ +ADWD I + +
Sbjct: 141 -RPVTVKFRAGWDEDHRNAVEIARLAEKAGVAAVAVHGRTRGQFYSGKADWDIIRQVKEA 199
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P+ GNGD
Sbjct: 200 VS--------------------------------------------------IPVLGNGD 209
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ + +D + L + GVMI RGA PWIF+E++
Sbjct: 210 VFTAQDALDLLAAT-HCDGVMIARGAQGNPWIFREVQ 245
>gi|119589551|gb|EAW69145.1| dihydrouridine synthase 3-like (S. cerevisiae), isoform CRA_d [Homo
sapiens]
Length = 239
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 65/83 (78%), Gaps = 2/83 (2%)
Query: 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578
L LHGR+REQRYTK ADW YIE+C Q SP PL+GNGDILS+ED +++ ++G+M
Sbjct: 50 LPQLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFEDANRAMQT--GVTGIM 107
Query: 579 IGRGALIKPWIFQEIKEKKLFDI 601
I RGAL+KPW+F EIKE++ +DI
Sbjct: 108 IARGALLKPWLFTEIKEQRHWDI 130
>gi|423342662|ref|ZP_17320376.1| hypothetical protein HMPREF1077_01806 [Parabacteroides johnsonii
CL02T12C29]
gi|409216917|gb|EKN09896.1| hypothetical protein HMPREF1077_01806 [Parabacteroides johnsonii
CL02T12C29]
Length = 343
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E A L++S + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + Q+ E D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGRDVPTMVEAAQICEAAHP-DILDINFGCPVKRVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N +P
Sbjct: 121 LML----------------------------------------DITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G + +++HGRTR Q YT +ADW
Sbjct: 137 VTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADW------------ 184
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
TL G ++ + P+ GNGD+ S
Sbjct: 185 --------------------TLIGEVKKNPRMQ----------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + VMIGRG++ +PWIF+E+K
Sbjct: 209 AEICKQRFEQY-GVDAVMIGRGSIGRPWIFREVK 241
>gi|78779403|ref|YP_397515.1| dihydrouridine synthase TIM-barrel protein nifR3 [Prochlorococcus
marinus str. MIT 9312]
gi|78712902|gb|ABB50079.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Prochlorococcus
marinus str. MIT 9312]
Length = 335
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 147/360 (40%), Gaps = 114/360 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IKIK +I + K+ LSPL V + FRRL +KW + + +EM AT L K
Sbjct: 5 IKIKGRGVNRI-IKSKVMLSPLAGVTDNIFRRLVRKWAPNSLLFTEMINATSLKKG---- 59
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
FG Q K Q+ E+ V
Sbjct: 60 ------------FGTQ----------KINQINLEEGPV---------------------- 75
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
GVQ+ N PY +++ + E+ +D+N+GCP++ I K+G GS L++
Sbjct: 76 --------GVQIFDNRPYAVSEAAKQAEDSGAF-LIDINMGCPVKKIAKKGGGSALIKDR 126
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+ ++ + + +P+TVKTR G I +F+ K +D GA++ITLHGRTR+Q ++
Sbjct: 127 KLAIELVKNVVKAVKIPVTVKTRLGWDSKEENIEDFLFKLQDAGATMITLHGRTRKQGFS 186
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
++DW+ I + +L
Sbjct: 187 GKSDWEMIGRLKKLLE-------------------------------------------- 202
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE----IKEKKLF 599
P+ NGDI + +D L K+ + GVMIGRG L PW E IKE K F
Sbjct: 203 ------IPVIANGDIKNPDDALNCLNKTNA-DGVMIGRGILGSPWKLGEIDYAIKENKNF 255
>gi|170760677|ref|YP_001788862.1| dihydrouridine synthase [Clostridium botulinum A3 str. Loch Maree]
gi|169407666|gb|ACA56077.1| dihydrouridine synthase [Clostridium botulinum A3 str. Loch Maree]
Length = 323
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F G IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGKADWAII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNSVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ G+MIGRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSSEDALEMINKT-DCDGIMIGRGAQGNPWIFKQINEK 241
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|168180991|ref|ZP_02615655.1| dihydrouridine synthase [Clostridium botulinum NCTC 2916]
gi|168183602|ref|ZP_02618266.1| dihydrouridine synthase [Clostridium botulinum Bf]
gi|226950978|ref|YP_002806069.1| dihydrouridine synthase [Clostridium botulinum A2 str. Kyoto]
gi|237796983|ref|YP_002864535.1| dihydrouridine synthase [Clostridium botulinum Ba4 str. 657]
gi|421839598|ref|ZP_16273133.1| dihydrouridine synthase [Clostridium botulinum CFSAN001627]
gi|182668088|gb|EDT80067.1| dihydrouridine synthase [Clostridium botulinum NCTC 2916]
gi|182673187|gb|EDT85148.1| dihydrouridine synthase [Clostridium botulinum Bf]
gi|226844028|gb|ACO86694.1| dihydrouridine synthase [Clostridium botulinum A2 str. Kyoto]
gi|229261947|gb|ACQ52980.1| dihydrouridine synthase [Clostridium botulinum Ba4 str. 657]
gi|409733941|gb|EKN35807.1| dihydrouridine synthase [Clostridium botulinum CFSAN001627]
Length = 323
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F G IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGKADWAII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNSVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ G+MIGRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSSEDALEMINKT-DCDGIMIGRGAQGNPWIFKQINEK 241
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|420149034|ref|ZP_14656216.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394754260|gb|EJF37693.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 327
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GADI SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADILYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVNPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDEQSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E + + + G+MIGR A+ PWIF EIK
Sbjct: 210 PKKALE-YRNTYGVDGIMIGRAAIGYPWIFNEIKH 243
>gi|153941130|ref|YP_001392876.1| dihydrouridine synthase [Clostridium botulinum F str. Langeland]
gi|170756229|ref|YP_001783162.1| dihydrouridine synthase [Clostridium botulinum B1 str. Okra]
gi|384463836|ref|YP_005676431.1| dihydrouridine synthase [Clostridium botulinum F str. 230613]
gi|429244698|ref|ZP_19208132.1| dihydrouridine synthase [Clostridium botulinum CFSAN001628]
gi|152937026|gb|ABS42524.1| dihydrouridine synthase [Clostridium botulinum F str. Langeland]
gi|169121441|gb|ACA45277.1| dihydrouridine synthase [Clostridium botulinum B1 str. Okra]
gi|295320853|gb|ADG01231.1| dihydrouridine synthase [Clostridium botulinum F str. 230613]
gi|428758272|gb|EKX80710.1| dihydrouridine synthase [Clostridium botulinum CFSAN001628]
Length = 323
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F G IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGKADWAII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKSSVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ G+MIGRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSSEDALEMINKT-DCDGIMIGRGAQGNPWIFKQINEK 241
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|409047260|gb|EKM56739.1| hypothetical protein PHACADRAFT_194324 [Phanerochaete carnosa
HHB-10118-sp]
Length = 245
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 84/167 (50%), Gaps = 42/167 (25%)
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+TVK RTG+ N H MP+ +WGA+ +TLHGRTR+QRY+K ADWDYI+ C
Sbjct: 5 LGEVPVTVKLRTGVKDGRNNAHKIMPRLSTEWGAAALTLHGRTRQQRYSKLADWDYIKTC 64
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R +E+ + + P++G
Sbjct: 65 VDAV--------------------------RAKEEE--------------EGLATVPIFG 84
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
GD S +DY E + S + GVM+ RGALIKPWIF EIKE +DI
Sbjct: 85 GGDAFSSQDYWEKVNHS-GVDGVMVARGALIKPWIFTEIKEHHEWDI 130
>gi|332879824|ref|ZP_08447513.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332682201|gb|EGJ55109.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 324
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKLHGADMLYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVA-TVRPDLVDINFGCPVKKVVSKGAGAGVLKDIDLMVRLTKAVVRSTDLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G S +T+H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDESSINIEEVAERLQDVGISALTIHARTRSQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI +
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDN 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E K + G+MIGR A+ PWIF+EIK
Sbjct: 210 PEKALEYRNKY-GVDGIMIGRAAIGYPWIFREIKH 243
>gi|123968631|ref|YP_001009489.1| nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. AS9601]
gi|123198741|gb|ABM70382.1| putative nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. AS9601]
Length = 335
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/336 (27%), Positives = 139/336 (41%), Gaps = 111/336 (33%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
K+ LSPL V + FRRL +KW + + +EM AT L K +G
Sbjct: 19 KVMLSPLAGVTDNIFRRLVRKWAPNSLLFTEMINATSLKKG----------------YGT 62
Query: 319 QLCGNNPYVLTKCTQL-LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
Q K Q+ LEE PI GVQ+
Sbjct: 63 Q----------KINQIDLEE------------GPI-------------------GVQIFD 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
N PY +++ + E+ +D+N+GCP++ I K+G GS L++ + ++ + +
Sbjct: 82 NRPYAVSEAAKQAEDSGAF-LIDINMGCPVKKIAKKGGGSALIKDRKLAIELVKNVVKAV 140
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVKTR G I +F+ K +D GA++ITLHGRTR+Q ++ ++DW+ I + +L
Sbjct: 141 RVPVTVKTRLGWDSKEENIEDFLFKLQDAGATMITLHGRTRKQGFSGKSDWEMIGRLKKL 200
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
P+ NGD
Sbjct: 201 LE--------------------------------------------------IPVIANGD 210
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I + +D LKK+ + GVMIGRG L PW EI
Sbjct: 211 IKNPDDALNCLKKTKA-DGVMIGRGILGSPWKIGEI 245
>gi|312130655|ref|YP_003997995.1| tRNA-u20-dihydrouridine synthase [Leadbetterella byssophila DSM
17132]
gi|311907201|gb|ADQ17642.1| tRNA-U20-dihydrouridine synthase [Leadbetterella byssophila DSM
17132]
Length = 348
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/351 (26%), Positives = 146/351 (41%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR++CK+ GAD+ +E + L++++
Sbjct: 7 MVKIGNIELGEF----PLLLAPMEDVSDPPFRQVCKENGADMMYTEFVSSEGLIRNA--- 59
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+K D+F PY
Sbjct: 60 ---VKSVRKLDIF--------PY------------------------------------- 71
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+R G+QL G++ + +CT++ E + D +D+N GCP++ + +G+G+ LLQ
Sbjct: 72 --ERP--IGIQLFGSDVETMAECTKISTE-VNPDLIDINYGCPVKKVACRGAGAALLQDI 126
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
++ + + + + LP+TVKTR G I + +D G +T+HGRTR Q Y
Sbjct: 127 PLMARMTEAVVKATHLPVTVKTRLGWDDSTKNIEEVAERLQDVGIQALTIHGRTRAQLYK 186
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW I K NN P+ +
Sbjct: 187 GEADWSLIAKV------KNN------PRIK------------------------------ 204
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E E K + G+MIGR A+ PWIF EIK
Sbjct: 205 ------IPIFGNGDIDSPEKALE-YKNRFGVDGIMIGRAAIGYPWIFNEIK 248
>gi|238922487|ref|YP_002936000.1| tRNA-dihydrouridine synthase [Eubacterium rectale ATCC 33656]
gi|238874159|gb|ACR73866.1| tRNA-dihydrouridine synthase [Eubacterium rectale ATCC 33656]
Length = 323
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 134/351 (38%), Gaps = 107/351 (30%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
DI +I+ + + L L P+ V +LPFR LCK+ GA + C EM A +
Sbjct: 2 DIHQIRKLQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAI------ 55
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
L K +E L +
Sbjct: 56 ---LYKNKNTESLLSID------------------------------------------- 69
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G++P ++ + + +EE+ D +D+N+GCP+ I G GS L++
Sbjct: 70 ---EREKPVSLQMFGSDPQIMAQIAKQIEER-PFDILDINMGCPVPKIVNNGEGSALMKN 125
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ +I + + P+TVK R G ++ + GAS + +HGRTREQ Y
Sbjct: 126 PLLAGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYY 185
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+ +ADWD I + + S
Sbjct: 186 SGKADWDIIRQVKEAVS------------------------------------------- 202
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGD+LS ED + +++ G MI RGA PWIF +I
Sbjct: 203 -------IPVIGNGDLLSAEDVIK-MQEQTGCDGFMIARGAQGNPWIFSQI 245
>gi|148381462|ref|YP_001256003.1| dihydrouridine synthase [Clostridium botulinum A str. ATCC 3502]
gi|153932994|ref|YP_001385837.1| dihydrouridine synthase [Clostridium botulinum A str. ATCC 19397]
gi|153935504|ref|YP_001389244.1| dihydrouridine synthase [Clostridium botulinum A str. Hall]
gi|148290946|emb|CAL85082.1| putative dihydrouridine synthase [Clostridium botulinum A str. ATCC
3502]
gi|152929038|gb|ABS34538.1| dihydrouridine synthase [Clostridium botulinum A str. ATCC 19397]
gi|152931418|gb|ABS36917.1| dihydrouridine synthase [Clostridium botulinum A str. Hall]
Length = 323
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 94/225 (41%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P ++ + V +DVN+GCP I K G GS L++ + +I
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKLASEIIK 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M +V+ PITVK R G K+N F G IT+HGRTREQ Y +ADW I
Sbjct: 128 AMKKVAKKPITVKFRKGFDKNNINAVEFAKIMEQSGVDAITIHGRTREQMYEGKADWAII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K S P
Sbjct: 188 SKVKNSVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+ GNGD+ S ED E + K+ G+MIGRGA PWIF++I EK
Sbjct: 198 VIGNGDVFSSEDALEMINKT-YCDGIMIGRGAQGNPWIFKQINEK 241
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 52/114 (45%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF 316
+ ++L+P+ ++ FR +CK+ G + +EM A L S L E
Sbjct: 8 FHNNVFLAPMAGFTDIAFREICKELGCGLVYTEMVSAKALYYESNNTKELCVISNKEKPV 67
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G+ P ++ + V +DVN+GCP I K G GS L++ L
Sbjct: 68 ALQLFGHEPEIMANAVEFFNNNDDVCILDVNMGCPAPKIVKNGDGSALMKDPKL 121
>gi|28209975|ref|NP_780919.1| nitrogen regulation protein nifR3 [Clostridium tetani E88]
gi|28202410|gb|AAO34856.1| nitrogen regulation protein nifR3 [Clostridium tetani E88]
Length = 322
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 135/343 (39%), Gaps = 107/343 (31%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+++ +G ++L+PL V +L FR LCK+ G + +EM A L S + ++ R E
Sbjct: 5 RLELKGNVFLAPLAGVTDLAFRGLCKRMGCTLVYTEMVSAKALFYDSDKTKDML-RFSKE 63
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+L PI V
Sbjct: 64 EL-----------------------------------PI-------------------AV 69
Query: 374 QLCGNNPYVLTKCTQ-LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
Q+ G P ++ + V +D+N+GCP I K G GS L++ + ++
Sbjct: 70 QIFGKEPDIMANVVEKYFNSNDNVCLIDINMGCPAPKIVKNGEGSALMKNPKLASDIVES 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +VS+ P+TVK R G DN+ I+
Sbjct: 130 IKKVSTKPVTVKFRKGF--DNDNINAL--------------------------------- 154
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
F + GA +T+HGRTREQ Y +ADW+ I+K + P+
Sbjct: 155 --------------EFAKIMENSGADALTIHGRTREQMYQGKADWEIIKKVKE-SVKIPV 199
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ + ED + +S + GVM+ RGAL PWIF +I E
Sbjct: 200 IGNGDVFTGEDAINMI-ESTNCDGVMVARGALGNPWIFNQISE 241
>gi|308798905|ref|XP_003074232.1| MGC53781 protein (ISS) [Ostreococcus tauri]
gi|116000404|emb|CAL50084.1| MGC53781 protein (ISS), partial [Ostreococcus tauri]
Length = 555
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 88 TCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA---CRFGSSHLDE---- 140
C G+ C F HD F+ KP+D+ G C A R GS +
Sbjct: 48 ACARGDACAFSHDVEGFLTRKPKDLP---------GVCTFARAVDDARMGSVSVSRLARW 98
Query: 141 -NGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE---NKASKN 196
GG +E V E + K +N L ++ LRK Y+F +++ I K+ +++
Sbjct: 99 REGGAATEETVALEPPRAI-EKEINFLDRDLMVKLRKKAYDFTRADSIVKDVLGQMSAET 157
Query: 197 ENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKID 256
+ DD K KV K++ EKKKID
Sbjct: 158 QAAAKDDGAAESAPKRA---------------KVAAADDDDTTQAGAFTKVREGEKKKID 202
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++ KLYL+PLTTVGNLPFRR+CK GADITC EMA+ T LL+ P E+
Sbjct: 203 FKDKLYLAPLTTVGNLPFRRVCKTLGADITCGEMALVTNLLQGQPSEY 250
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 63/100 (63%), Gaps = 2/100 (2%)
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
+ + H PK WGA+ +TLHGRTR QRY ADW+YI K + S PL GNGD+
Sbjct: 334 SRVAHTLSPKVAGWGAAAMTLHGRTRAQRYRSVADWEYI-KLTKEVSSVPLIGNGDVYMQ 392
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
DY + + S+ M+ RGALIKPW+F EIKE++ +DI
Sbjct: 393 SDYYTHMAEH-SVDTCMLARGALIKPWLFTEIKERRDWDI 431
>gi|339441816|ref|YP_004707821.1| hypothetical protein CXIVA_07520 [Clostridium sp. SY8519]
gi|338901217|dbj|BAK46719.1| hypothetical protein CXIVA_07520 [Clostridium sp. SY8519]
Length = 318
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/336 (25%), Positives = 133/336 (39%), Gaps = 107/336 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V +LPFR LCK+ GA + C+EM A +
Sbjct: 12 LILAPMAGVTDLPFRLLCKEQGAGLLCTEMVSAKAI------------------------ 47
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
Y K T EE MA+D R + +QL G++P
Sbjct: 48 -----YYKNKKT---EELMAID-----------------------PREHPVSLQLFGSDP 76
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L ++++ D +D N+GCP+ + G GSGL++ + + ++T + + S P
Sbjct: 77 EILGLIAAQIQDR-PFDILDFNMGCPVPKVVNNGEGSGLMRDPKLAERILTALVKASRKP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G ++ G + + +HGRTR Q Y+ +ADWD I + + S
Sbjct: 136 VTVKFRKGFDDEHVNAVEIAKIAEQCGVAAVAVHGRTRMQYYSGRADWDIIRQVKEAVS- 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+LS
Sbjct: 195 -------------------------------------------------IPVIGNGDLLS 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
+D ++K+ G MIGRGA PWIF++I K
Sbjct: 206 ADDVL-AMKEQTGCDGFMIGRGAQGNPWIFRQILHK 240
>gi|333029581|ref|ZP_08457642.1| TIM-barrel protein, nifR3 family [Bacteroides coprosuis DSM 18011]
gi|332740178|gb|EGJ70660.1| TIM-barrel protein, nifR3 family [Bacteroides coprosuis DSM 18011]
Length = 329
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 143/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKRFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
YV K T+ L+ IY + +R +Q+ G
Sbjct: 51 -----YV-NKTTEKLK------------------IYDE-------ERP--VAIQIYGKET 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE D +D+N GCP+ + +G+GSG+++ + ++ + + +P
Sbjct: 78 DAMVEAAKIVEEAKP-DILDINFGCPVRKVAGKGAGSGMMKTPEKMIAITKAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + +D+G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDDDNKIIVELAEQLQDFGIEALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + +K + +MIGR + +PWIF+E+K
Sbjct: 209 AESAKDHFEKY-GVDAIMIGRASFGRPWIFEEVK 241
>gi|218258330|ref|ZP_03474732.1| hypothetical protein PRABACTJOHN_00387 [Parabacteroides johnsonii
DSM 18315]
gi|218225570|gb|EEC98220.1| hypothetical protein PRABACTJOHN_00387 [Parabacteroides johnsonii
DSM 18315]
Length = 343
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E A L++S + + E +Q+
Sbjct: 13 VFLAPMEDVTDVSFRLMCKRFGADMVYTEFVSADALIRSVNKTQQKLNVANEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + Q+ E D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 73 YGRDVPTMVEAAQICEAAHP-DILDINFGCPVKRVAGKGAGAGMLRNISLM--------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I + V+ +N +P
Sbjct: 123 ------------------------------------------LDITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G + +++HGRTR Q YT +ADW
Sbjct: 137 VTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADW------------ 184
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
TL G ++ + P+ GNGD+ S
Sbjct: 185 --------------------TLIGEVKKNPRMQ----------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + VMIGRG++ +PWIF+E+K
Sbjct: 209 AEICKQRFEQY-GVDAVMIGRGSIGRPWIFREVK 241
>gi|452911343|ref|ZP_21960012.1| tRNA dihydrouridine synthase B [Kocuria palustris PEL]
gi|452833461|gb|EME36273.1| tRNA dihydrouridine synthase B [Kocuria palustris PEL]
Length = 421
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 137/335 (40%), Gaps = 106/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V N FR LC+ G + +EM A AL++R E +Q+
Sbjct: 59 VVLAPMAGVTNKAFRALCRAHGGGLYVTEMVTAR----------ALVERREKS----LQI 104
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++P+ + Q+ VD V+V
Sbjct: 105 VHHDPHETPRSVQI----YGVDAVNVG--------------------------------- 127
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVSSL 439
K +++ E+ + D +D+N GCP+ + K+G GS L + ++ +++++ + E L
Sbjct: 128 ----KAVRMVVEEDIADHIDLNFGCPVPKVTKRGGGSALPWKTDLFEAILSAAVREAQGL 183
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+KTR GI D+ RD G + +TLHGRT EQ Y+ QADW I +
Sbjct: 184 PVTIKTRKGIDDDHLTYLEAGRMARDLGIAGMTLHGRTLEQHYSGQADWSSIAR------ 237
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
+ +P P+ GNGDI
Sbjct: 238 -----LREAIPDM--------------------------------------PILGNGDIW 254
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
S ED + ++ + GV+IGRG +PW+F +++
Sbjct: 255 SAEDAVRMVNET-GVDGVVIGRGCQGRPWLFGDLQ 288
>gi|120437655|ref|YP_863341.1| tRNA-dihydrouridine synthase [Gramella forsetii KT0803]
gi|117579805|emb|CAL68274.1| tRNA-dihydrouridine synthase [Gramella forsetii KT0803]
Length = 330
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 140/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIREA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K T L+ + ++ G+Q+ G N
Sbjct: 54 --------AKSTMKLD---------------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+ M + +SLP
Sbjct: 79 ESMLQSVEIVEKSGP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTEAMVKNTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I++HGRTR Q Y +ADW I + +
Sbjct: 138 ITVKTRLGWDHDSIKIVEVAERLQDVGCKAISIHGRTRAQMYKGEADWAPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + + G MIGR ++ PW F+E+K
Sbjct: 210 PEKAME-MRDNFGLDGAMIGRASIGYPWFFREVK 242
>gi|327312701|ref|YP_004328138.1| nifR3 family TIM-barrel protein [Prevotella denticola F0289]
gi|326945572|gb|AEA21457.1| TIM-barrel protein, nifR3 family [Prevotella denticola F0289]
Length = 355
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 138/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 42 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAIIRSIRSTLSKMVIDDSERPVGIQI 101
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 102 YGRDVASMVEAARIV-EQAKPDVIDINFGCPVKKVAGKGAGSGMLK-----------NIP 149
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ + S+P
Sbjct: 150 LLL----------------------------------------EITREVVKAV----SIP 165
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G KDN +I + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 166 VTVKTRLGWDKDNLVITDLAEQLQDCGIQALTIHGRTRSQMYTGEADWTLIGEV-----K 220
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 221 KNPRIH-------------------------------------------IPIIGNGDVTS 237
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ E + + VMIGR PWIF++
Sbjct: 238 VREAGEKFDRY-GVDAVMIGRATFGCPWIFRQ 268
>gi|150014995|ref|YP_001307249.1| nifR3 family TIM-barrel protein [Clostridium beijerinckii NCIMB
8052]
gi|149901460|gb|ABR32293.1| putative TIM-barrel protein, nifR3 family [Clostridium beijerinckii
NCIMB 8052]
Length = 321
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 130/340 (38%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ ++ ++L+P+ V ++ FR LCK+ G + +EM A L S L++ + E
Sbjct: 6 LTFENNIFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTQTLLRIADEEK 65
Query: 315 LFGVQLCGNNPYVLTK-CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
Q+ G P V+ + C + L + + +D+N+GCP I K G GS L++
Sbjct: 66 PVAAQIFGREPDVMARICEEYLNNRKDICIIDINMGCPAPKIVKNGEGSALMK------- 118
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
E ++ D V +
Sbjct: 119 -----------------EPELAYDIV-------------------------------RTI 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS+ P+TVK R G +DN F GA I +HGRTR+Q Y +ADWD I++
Sbjct: 131 KKVSTKPVTVKFRKGFDEDNINAVEFAKGMEQAGADAIAVHGRTRKQMYQGKADWDIIKR 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S P+
Sbjct: 191 VKDSVS--------------------------------------------------IPVI 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ S ED +K++ + G+MI RG+ PWIF++I
Sbjct: 201 GNGDVFSPEDAIR-MKRTTNCDGIMIARGSQGNPWIFRQI 239
>gi|152990938|ref|YP_001356660.1| tRNA-dihydrouridine synthase [Nitratiruptor sp. SB155-2]
gi|151422799|dbj|BAF70303.1| tRNA-dihydrouridine synthase [Nitratiruptor sp. SB155-2]
Length = 308
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 138/346 (39%), Gaps = 110/346 (31%)
Query: 254 KIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ LY L+PL +LPFR + KK+GAD+T SEM + L+ S + + ++++
Sbjct: 2 KLDFSKPLYVLAPLAGYTDLPFRSVVKKFGADLTISEMISSNALVYDSKKTYKMLEKSPE 61
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E NPY
Sbjct: 62 E----------NPYF--------------------------------------------- 66
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G +P ++ + + L E +D +D+N GCP+ + KQG+GS LL + L ++
Sbjct: 67 VQIAGGDPLIVKEAVERLNEIEGIDGIDLNCGCPVPKVVKQGAGSALLDDLDRLGKIVQT 126
Query: 433 MNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ E S T VK R G + N + + + GA IT+HGRTR + D++ I
Sbjct: 127 IKETSEKNYTSVKIRLGFTE--NRVVEIVKVLEEAGADFITIHGRTRSGGFKAPVDYEAI 184
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + S P
Sbjct: 185 ARAKESVS--------------------------------------------------IP 194
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
+ NGDI +++ E L + + GVMIGRGA+ KPWIF ++K K
Sbjct: 195 VIANGDITNFQKTQEVLFITKA-DGVMIGRGAIGKPWIFYQLKHGK 239
>gi|399889902|ref|ZP_10775779.1| putative TIM-barrel protein, nifR3 family [Clostridium arbusti
SL206]
Length = 322
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 97/224 (43%), Gaps = 51/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ G+ P ++ K + +D+N+GCP I K G GS L++ + ++
Sbjct: 68 AVQIFGSEPSIMAKACDYFNNNENICIIDINMGCPAHKIVKNGEGSALMKNPKLAAEIVR 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ S+ P+TVK R G +N +F + GA I +HGRTREQ Y +ADWD I
Sbjct: 128 ETKKASTKPVTVKFRKGFDSENINAVDFAKVIEEAGADAIAVHGRTREQMYEGKADWDII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K + S P
Sbjct: 188 AKVKKEVS--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ GNGDI S ED + +KK + G+MI RG++ PWIF+EIK+
Sbjct: 198 VIGNGDIFSTEDALQ-IKKKTNCDGIMIARGSMGNPWIFREIKQ 240
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+++ ++L+P+ V ++ FR +CK G + +EM A L S L+K + E
Sbjct: 6 LEFSNNVFLAPMAGVTDIIFRGICKDMGCGLVYTEMVSAKALYYGSENTKELLKVSKKER 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VQ+ G+ P ++ K + +D+N+GCP I K G GS L++ L
Sbjct: 66 PVAVQIFGSEPSIMAKACDYFNNNENICIIDINMGCPAHKIVKNGEGSALMKNPKL 121
>gi|326335679|ref|ZP_08201865.1| tRNA-dihydrouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325692108|gb|EGD34061.1| tRNA-dihydrouridine synthase B [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 326
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F
Sbjct: 14 LLLAPMEDVSDPPFRRLCKLHGADMLYSEFISSEGLIRDA------IKSRKKLDIF---- 63
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
E++ V G+Q+ G +
Sbjct: 64 ---------------EDERPV------------------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ +++E + D VD+N GCP++ + +G+G+ +L+ +++ + + ++LP
Sbjct: 79 EAMSLSARIVE-TVSPDVVDINFGCPVKKVVAKGAGAAVLKDIDLMVRLAKAVVRSTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G +++H RTR Q Y +DW YI K +
Sbjct: 138 VTVKTRLGWDTDSINIEEVAERLQDVGIQALSIHARTRVQMYKGHSDWSYIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E K + G+MIGR A+ PWIF EIK+
Sbjct: 210 PEK-ALVYKNKYGVDGIMIGRAAIGYPWIFHEIKQ 243
>gi|78777367|ref|YP_393682.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sulfurimonas
denitrificans DSM 1251]
gi|78497907|gb|ABB44447.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Sulfurimonas
denitrificans DSM 1251]
Length = 318
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 88/344 (25%), Positives = 135/344 (39%), Gaps = 110/344 (31%)
Query: 253 KKIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KK+ + +Y L+PL +LPFR + KK+GAD+T SEM + L+ S + +I++
Sbjct: 4 KKLTFDKPVYVLAPLAGYTDLPFRSVVKKFGADLTVSEMLSSNALVHGSSKTLGMIEKSP 63
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+E +PY
Sbjct: 64 NE----------DPY--------------------------------------------- 68
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ G V+ + ++L EQ +D +D+N GCP+ I GSGS LL ++ +I
Sbjct: 69 SVQIAGAEVNVIRRAVEILNEQDGIDIIDLNCGCPVPKIVGHGSGSSLLLNLPLMGEIIR 128
Query: 432 CMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ S+ +T VK R G K N++ + D GA I +HGRTR ++ D+D
Sbjct: 129 TIKNTSNKNLTSVKIRLGFEKKNHV--DIAKMVEDSGADFIAVHGRTRAGKFKAPVDYDA 186
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + + +
Sbjct: 187 IREIKEAIN--------------------------------------------------I 196
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ NGDI SYE E + + GVMIGRGA+ PWIF ++K
Sbjct: 197 PVIANGDIDSYEK-AEWVLEHTGADGVMIGRGAVGAPWIFHQLK 239
>gi|153853506|ref|ZP_01994886.1| hypothetical protein DORLON_00875 [Dorea longicatena DSM 13814]
gi|149753661|gb|EDM63592.1| TIM-barrel protein, nifR3 family [Dorea longicatena DSM 13814]
Length = 318
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 131/333 (39%), Gaps = 107/333 (32%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ V +LPFR LCK+ GA + C EM A L + AL+ H E +QL G
Sbjct: 14 LAPMAGVTDLPFRLLCKEQGAGLLCMEMISAKALQYKNKNTKALLAIHPEEYPVSLQLFG 73
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
++P ++++ +++EE + +D+N+GCP+ + + G GS L++ L +
Sbjct: 74 SDPKIMSEMAKMIEE-LPFQILDINMGCPVPKVVRNGEGSALMKNPKLVH--------EI 124
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
++ ++ +E+ + V
Sbjct: 125 VSAVSKAIEKPVTV---------------------------------------------- 138
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
K R G D+ D G + + +HGRTREQ Y+ +ADWD I + + S
Sbjct: 139 -KIRKGFDDDHINAVEIAKIIEDAGGAAVAVHGRTREQYYSGKADWDIIRQVKEAVS--- 194
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
P+ GNGD++S E
Sbjct: 195 -----------------------------------------------IPVIGNGDVISGE 207
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ +++ GVMIGRGA PWIF E++E
Sbjct: 208 KALQ-MRRETGCDGVMIGRGAQGNPWIFHELQE 239
>gi|302390600|ref|YP_003826421.1| tRNA-U20-dihydrouridine synthase [Thermosediminibacter oceani DSM
16646]
gi|302201228|gb|ADL08798.1| tRNA-U20-dihydrouridine synthase [Thermosediminibacter oceani DSM
16646]
Length = 340
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 103/224 (45%), Gaps = 52/224 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
GVQL GN+P + +E+ + DF+++N+GCP I K G G L++ + +I
Sbjct: 79 GVQLFGNDPEFFAHAVKKIED-IPFDFININMGCPTPKIVKNGDGCALMKDPELAGKIIE 137
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ S P+TVK R G +D+ F ++ GA+++ +HGRTREQ Y+ +ADWD I
Sbjct: 138 ATAKASDRPVTVKIRKGWDEDSANAVEFSRMAQESGAAMVIIHGRTREQFYSGKADWDII 197
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + S P
Sbjct: 198 RRVKEAVS--------------------------------------------------IP 207
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ GNGD+ S +D + L+ + GVM+GRGAL P+IF+EIK
Sbjct: 208 VIGNGDVFSAQDAAKMLEYT-GCDGVMVGRGALGNPFIFREIKH 250
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ + +LPFR +CK+ GAD+ +EM + + + AL+ E GVQL
Sbjct: 23 VFLAPMAGITDLPFRTICKELGADVVITEMVSTRGIYYNDSKTAALLTIDPCEHPIGVQL 82
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
GN+P + +E+ + DF+++N+GCP I K G G L++ L G
Sbjct: 83 FGNDPEFFAHAVKKIED-IPFDFININMGCPTPKIVKNGDGCALMKDPELAG 133
>gi|345884926|ref|ZP_08836321.1| hypothetical protein HMPREF0666_02497 [Prevotella sp. C561]
gi|345042172|gb|EGW46278.1| hypothetical protein HMPREF0666_02497 [Prevotella sp. C561]
Length = 318
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 140/338 (41%), Gaps = 106/338 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A ++++ A I +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAVIRNIKSTLAKIVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVRPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ + P
Sbjct: 121 LLL----------------------------------------DITREVVKAVKT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNDNLIITELAEQLQDCGIQALTIHGRTRSQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
E E + + VMIGR PW+F + EK+L
Sbjct: 209 IEQANERFDRY-GVDAVMIGRATFGCPWLFYQ-GEKQL 244
>gi|261878855|ref|ZP_06005282.1| tRNA-dihydrouridine synthase [Prevotella bergensis DSM 17361]
gi|270334534|gb|EFA45320.1| tRNA-dihydrouridine synthase [Prevotella bergensis DSM 17361]
Length = 336
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 149/352 (42%), Gaps = 109/352 (30%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E KK L+L+P+ V ++ FR+LCK++GAD+ +E A ++++
Sbjct: 1 MMKIGNIEFKK----QPLFLAPMEDVTDIGFRKLCKRYGADMMYTEFVSAEAIIRNIKST 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ + E G+Q+ G + + + +++ E + D +D+N GCP++ + +G+G+G
Sbjct: 57 LDKMQIDDDERPVGIQIYGRDVESMVEAAKMV-ETVEPDVIDINFGCPVKKVAGKGAGAG 115
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+L+ N P +L
Sbjct: 116 MLK-----------NIPLML---------------------------------------- 124
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+I ++V+ + +P+T KTR G DN II + + +D G +T+HGRTR Q YT
Sbjct: 125 DITRAVVDAVR----VPVTAKTRLGWDLDNLIITDLAEQLQDCGIRALTIHGRTRSQMYT 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
ADW I + + N IH
Sbjct: 181 GDADWSLIGEVKR-----NPRIH------------------------------------- 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ GNGDI + E ++ ++ + VMIGR PWIF+E+++
Sbjct: 199 ------IPIIGNGDITTPEQAKQAFERY-GVDAVMIGRATFGCPWIFKEMRD 243
>gi|325261220|ref|ZP_08127958.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
gi|324032674|gb|EGB93951.1| TIM-barrel protein, NifR3 family [Clostridium sp. D5]
Length = 319
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ Q L P+ V +LPFR LCK+ GA + C EM A +L ++ +L++ H E
Sbjct: 9 VQLQNSYILGPMAGVTDLPFRLLCKEQGAGLVCMEMVSAKGILYNNKNTESLLEIHPDEM 68
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+QL G++P ++++ + +EE+ +D+N+GCP+ + + G GS L++
Sbjct: 69 PASLQLFGSDPKIVSEMAKKIEER-PFAILDINMGCPVPKVVRNGEGSALMK-------- 119
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP + +Y+ ++ +V+ +
Sbjct: 120 ----NP---------------------------KLVYE------------LVSAVVKAIK 136
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+TVK R G +D+ + GA+ + +HGRTREQ Y+ +ADW+ I K
Sbjct: 137 K----PVTVKIRKGFDEDHVNAVEIAKIIEEAGAAAVGVHGRTREQYYSGKADWEIIRKV 192
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 193 KEAVS--------------------------------------------------IPVIG 202
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGD+ S E ++++ GVMI RGA PWIF E+
Sbjct: 203 NGDVTSGEKAI-AMREQTGCDGVMIARGAQGNPWIFSEL 240
>gi|317504340|ref|ZP_07962326.1| tRNA-dihydrouridine synthase [Prevotella salivae DSM 15606]
gi|315664531|gb|EFV04212.1| tRNA-dihydrouridine synthase [Prevotella salivae DSM 15606]
Length = 335
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 147/343 (42%), Gaps = 106/343 (30%)
Query: 254 KIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ + L+L+P+ V ++ FR LCK++GA + +E A +++S + +++
Sbjct: 5 KLDFGERPLFLAPMEDVTDIGFRMLCKRYGAAMVYTEFVSADAIIRSIKSTLDKMSINDA 64
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E GVQ+ G + + + +++ E++ D +D+N GCP++ + +G+GSG+L+
Sbjct: 65 ERPVGVQIYGRDVESMVEAARIV-ERVNPDLIDLNFGCPVKKVAGKGAGSGMLR------ 117
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
N P +L D+ N++Q+V
Sbjct: 118 -----NIPLLL----------------DIT--------------------RNVVQAV--- 133
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
S P+TVKTR G D+ +I + +D G +T+HGRTR Q YT +ADW I
Sbjct: 134 -----STPVTVKTRLGWDNDSLVITELAEQLQDCGIKALTIHGRTRAQMYTGEADWRLIG 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + N IH P+
Sbjct: 189 EVKR-----NPRIH-------------------------------------------IPI 200
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI + E+ + + VM+GR +PW+F+E+++
Sbjct: 201 IGNGDITTPEEAKRAFDDY-GVDAVMVGRATFGRPWVFKEMRD 242
>gi|406884809|gb|EKD32149.1| hypothetical protein ACD_77C00169G0004 [uncultured bacterium]
Length = 324
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + FR +CK++GAD+ +E + L++ + ++ E G+Q+
Sbjct: 13 LFLAPMEDVTDASFRYICKEYGADVMYTEFVSSDALVRDIKRSLDKLETFPYERPIGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P + + + + E F+D+N GCP+ I +G+GSG+++
Sbjct: 73 YGHIPEAMEEAAK-IAELANPSFIDINFGCPVNKIANRGAGSGMMRYP------------ 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
E+M +D+ I+Q+V LP
Sbjct: 120 -----------EKM----LDIT--------------------KRIVQAV--------KLP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ II + +D G + +T+HGRTR Q Y +ADW
Sbjct: 137 VTVKTRLGWDENSKIIVELAEQLQDLGTTALTVHGRTRMQMYKGEADW------------ 184
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
TL G ++ K P+ GNGDI S
Sbjct: 185 --------------------TLIGEIKKNPRIK----------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E+ K + GVMIGR +PWIF+EIK
Sbjct: 209 PEGAKEAFDKY-GVDGVMIGRATYGRPWIFKEIK 241
>gi|300727518|ref|ZP_07060909.1| TIM-barrel protein, NifR3 family [Prevotella bryantii B14]
gi|299775221|gb|EFI71822.1| TIM-barrel protein, NifR3 family [Prevotella bryantii B14]
Length = 333
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 143/348 (41%), Gaps = 112/348 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR+LCK++GA + +E A +++S + + E G+Q+
Sbjct: 13 VFLAPMEDVTDIGFRKLCKRYGAAMMYTEFVSADAIIRSIKSTLNKMIIDDDERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++E Q D +D+N GCP++ + +G+G+GLL+ N P
Sbjct: 73 YGKEVESMVEAAKIVE-QFHPDVIDINFGCPVKKVAGKGAGAGLLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I + V+ +N +P
Sbjct: 121 LML----------------------------------------DIAKHVVEAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T KTR G +DN +I + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTAKTRLGWDQDNLVITDLAEQLQDCGIQALTIHGRTRSQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI +
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK-------EKKLFDI 601
E+ + + VM+GR +PWIF+EI+ + KL DI
Sbjct: 209 PEECKRAFDDF-GVDAVMVGRATFGRPWIFKEIRDYLDGKPDDKLLDI 255
>gi|357043468|ref|ZP_09105161.1| hypothetical protein HMPREF9138_01633 [Prevotella histicola F0411]
gi|355368360|gb|EHG15779.1| hypothetical protein HMPREF9138_01633 [Prevotella histicola F0411]
Length = 319
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 136/332 (40%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK +GA + +E A +++S + + + E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKHFGAAMVYTEFVSADAIIRSIKSTLSKMVIDDGERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LLL----------------------------------------EITREVVKAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDHDHLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
ED E + + VMIGR PW+F +
Sbjct: 209 VEDAHEKFDRY-GVDAVMIGRATFGCPWLFNQ 239
>gi|150009773|ref|YP_001304516.1| TIM-barrel enzyme [Parabacteroides distasonis ATCC 8503]
gi|149938197|gb|ABR44894.1| putative TIM-barrel enzyme [Parabacteroides distasonis ATCC 8503]
Length = 329
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 141/341 (41%), Gaps = 119/341 (34%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGKDVASMVEAARICEEARP-DILDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LML----------------------------------------EITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN +I + + +D G + +++HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIRAV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTS 208
Query: 561 -------YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+EDY + VMIGR ++ +PWIF+E+K
Sbjct: 209 AEICKQRFEDY--------GVDAVMIGRASIGRPWIFREVK 241
>gi|344248723|gb|EGW04827.1| tRNA-dihydrouridine synthase 3-like [Cricetulus griseus]
Length = 120
Score = 111 bits (278), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
++ H+ +P+ DWG +L+T +G ++EQRYT A W YIE+C ++ SP L+GN DILS+E
Sbjct: 10 SLAHHLLPELWDWGVALVTFNGSSQEQRYTTLAVWPYIEQCTKVASPMLLFGNRDILSFE 69
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
D +++ + GVMI GAL+KPW+ EIKE+K +DI++
Sbjct: 70 DANSAMQM--GVEGVMIAGGALLKPWLLTEIKEQKHWDIWS 108
>gi|327402492|ref|YP_004343330.1| tRNA-U20-dihydrouridine synthase [Fluviicola taffensis DSM 16823]
gi|327318000|gb|AEA42492.1| tRNA-U20-dihydrouridine synthase [Fluviicola taffensis DSM 16823]
Length = 333
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCKK GAD+ +E + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRALCKKHGADLMYTEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G +
Sbjct: 67 -----------------------------KPI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++++ D +D+N GCP++ + +G+G+G+L+ +++ + + +SLP
Sbjct: 79 EAMAMSAKIVDAT-APDLLDINFGCPVKKVVSKGAGAGVLKDVDLMVRLTQACIKSTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G I + +D G +++HGRTR Q Y +ADW YI +
Sbjct: 138 VTVKTRLGWDDSMINIMEVAERLQDIGVEALSIHGRTRSQMYKGEADWSYI------AAV 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P++GNGDI S
Sbjct: 192 KNN------PRIK------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K + G+M+GR ++ PWIF EIK
Sbjct: 210 PEKAVE-YKNRYGVDGIMVGRASIGYPWIFNEIK 242
>gi|258648271|ref|ZP_05735740.1| tRNA-dihydrouridine synthase B [Prevotella tannerae ATCC 51259]
gi|260852187|gb|EEX72056.1| tRNA-dihydrouridine synthase B [Prevotella tannerae ATCC 51259]
Length = 343
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 104/336 (30%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+ L L+P+ V ++ FRRLC++ GA + SE + L+++ + + ++E
Sbjct: 10 ESPLLLAPMEDVTDIGFRRLCRQMGAAMAYSEFVASDALVRNVRRSLDKLAVSDAERPVA 69
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
+Q+ G P + + +++EE D +D+N GCP++ + +G+G+GLLQ
Sbjct: 70 IQIYGRFPDAMAEAAKIVEETSHPDILDLNFGCPVKRVAGKGAGAGLLQ----------- 118
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
N P +L I + V+ E
Sbjct: 119 NVPLML----------------------------------------EITRRVV----EAV 134
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVKTR G ++ II + +D G S +T+HGRTR Q Y +ADW I +
Sbjct: 135 KIPVTVKTRLGWDSEHEIITELAEQLQDCGISALTIHGRTRAQMYKGEADWRLIGEV--- 191
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ N IH P+ GNGD
Sbjct: 192 --KRNPRIH-------------------------------------------IPIIGNGD 206
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ + ED + + + M+GR +PWIF+E+
Sbjct: 207 LTTGEDVRRAFEHY-GVDACMVGRATFGRPWIFKEM 241
>gi|422325340|ref|ZP_16406376.1| hypothetical protein HMPREF0737_01486 [Rothia mucilaginosa M508]
gi|353343344|gb|EHB87662.1| hypothetical protein HMPREF0737_01486 [Rothia mucilaginosa M508]
Length = 437
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 133/334 (39%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V N FRRLC ++G + +EM A L++ P+ +I+ E + +Q+
Sbjct: 73 VVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEHDPDEKIRSIQI 132
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + K +++ E+ D +D+N GCP + ++G G+ L + +LF
Sbjct: 133 YGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLF--------- 183
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I+Q+ + + + +P
Sbjct: 184 ------------------------------------------TAIVQTAVKEASR-NDIP 200
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI D+ RD G + I LHGRT Q Y+ +ADWD I AQL
Sbjct: 201 LTVKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQHYSGKADWDSI---AQL--- 254
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+L P+ GNGDI S
Sbjct: 255 -------------------------------------------RELIPDVPILGNGDIFS 271
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ + GV+IGRG +PW+F +++
Sbjct: 272 AEDAVRMVEQT-GVDGVVIGRGCQGRPWLFGDLQ 304
>gi|350566413|ref|ZP_08935086.1| tRNA-dihydrouridine synthase [Peptoniphilus indolicus ATCC 29427]
gi|348662803|gb|EGY79443.1| tRNA-dihydrouridine synthase [Peptoniphilus indolicus ATCC 29427]
Length = 313
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 108/226 (47%), Gaps = 58/226 (25%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQL G+ PY + K +++ + DF+ D+N+GCP I K SGS LL + N++ V
Sbjct: 64 VQLFGDEPYFMAKAAEIVSK---FDFIGIDINMGCPAPKIVKNNSGSALLDQPNLVYEVT 120
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + LP++VK R GI + N M ++ A+
Sbjct: 121 RAVVNATDLPVSVKIRKGIRET-----NSMEAAKEIEAA--------------------- 154
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
GA IT+HGRTRE+ YT +DW+YI + A+L
Sbjct: 155 -------------------------GAKRITVHGRTREEYYTGVSDWEYISEIAKLVK-I 188
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
P+ GNGD+ SY++ E + S ++GV IGR A+ P+IF+EI K
Sbjct: 189 PVIGNGDVDSYQNALEKV-MSYGVNGVSIGRAAIGNPFIFEEIATK 233
Score = 95.1 bits (235), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 130/315 (41%), Gaps = 82/315 (26%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PL ++ FR +C + GA +EM ++ + L+K +E VQL G
Sbjct: 9 LAPLAGYTDIAFREICSRMGASEVVTEMVSCKGIVYGDRKTNDLLKTSPNEKNVVVQLFG 68
Query: 323 NNPYVLTKCTQLLEEQMAVDF--VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ PY + K +++ + DF +D+N+GCP I K SGS LL + NL
Sbjct: 69 DEPYFMAKAAEIVSK---FDFIGIDINMGCPAPKIVKNNSGSALLDQPNLV--------- 116
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
Y +T+ VV+ D LP
Sbjct: 117 YEVTRA--------VVNATD--------------------------------------LP 130
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-- 498
++VK R GI + N++ + GA IT+HGRTRE+ YT +DW+YI + A+L
Sbjct: 131 VSVKIRKGIRETNSM--EAAKEIEAAGAKRITVHGRTREEYYTGVSDWEYISEIAKLVKI 188
Query: 499 ----SRDNNIIHNFMPKFRDWGASLIT--------------LHGRTREQRYTKQADWDYI 540
+ D + N + K +G + ++ + ++R + Y + + D I
Sbjct: 189 PVIGNGDVDSYQNALEKVMSYGVNGVSIGRAAIGNPFIFEEIATKSRGEEYFEPSFVDRI 248
Query: 541 EKCAQLCSPAPLYGN 555
EK + A Y N
Sbjct: 249 EKAREHLRLAVEYKN 263
>gi|347535103|ref|YP_004842528.1| putative tRNA-dihydrouridine synthase [Flavobacterium
branchiophilum FL-15]
gi|345528261|emb|CCB68291.1| Probable tRNA-dihydrouridine synthase [Flavobacterium
branchiophilum FL-15]
Length = 329
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 142/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK+ GAD+ SE + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKRHGADLMYSEFISSEGLIRDA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ +M +D D PI G+Q+ G +
Sbjct: 54 --------------IKSKMKLDIFDYE--RPI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++++ + D +D+N GCP++ + +G+G+G+L+ +++ + + + + LP
Sbjct: 79 EAMALSSKIVS-AVNPDLIDINFGCPVKKVVTKGAGAGVLKDVDLMIKLTKAVIDATHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G +++H RTR Q Y QADW ++ +
Sbjct: 138 VTVKTRLGWDENSINIDEVAERLQDIGVQALSIHARTRSQMYKGQADWSHVARI------ 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ IT+ P++GNGDI S
Sbjct: 192 KNN------PR--------ITM----------------------------PIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ + K I G+MIGR A+ PWIF EIK
Sbjct: 210 PQKALQ-YKNEYGIDGIMIGRAAIGYPWIFDEIKH 243
>gi|317474747|ref|ZP_07934021.1| dihydrouridine synthase [Bacteroides eggerthii 1_2_48FAA]
gi|316909428|gb|EFV31108.1| dihydrouridine synthase [Bacteroides eggerthii 1_2_48FAA]
Length = 327
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK +GAD+ +E + L++S + +K + E +Q+
Sbjct: 13 VLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTDTMVEAARIV-EQARPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I +SV+ + +P
Sbjct: 121 KML----------------------------------------EITRSVVDAVK----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G N II + + +D G + +T+HGRTR Q YT +ADW I + R
Sbjct: 137 VTVKTRLGWDASNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----R 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +MIGR + +PWIF+E+K
Sbjct: 209 PQRAKECFDRY-GVDAIMIGRASFGRPWIFKEVK 241
>gi|212692328|ref|ZP_03300456.1| hypothetical protein BACDOR_01824 [Bacteroides dorei DSM 17855]
gi|237711412|ref|ZP_04541893.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|265752818|ref|ZP_06088387.1| dehydrogenase [Bacteroides sp. 3_1_33FAA]
gi|345514118|ref|ZP_08793632.1| dehydrogenase [Bacteroides dorei 5_1_36/D4]
gi|423230712|ref|ZP_17217116.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T00C15]
gi|423240664|ref|ZP_17221778.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL03T12C01]
gi|423244423|ref|ZP_17225498.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T12C06]
gi|212665205|gb|EEB25777.1| TIM-barrel protein, nifR3 family [Bacteroides dorei DSM 17855]
gi|229435935|gb|EEO46012.1| dehydrogenase [Bacteroides dorei 5_1_36/D4]
gi|229454107|gb|EEO59828.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|263236004|gb|EEZ21499.1| dehydrogenase [Bacteroides sp. 3_1_33FAA]
gi|392630362|gb|EIY24355.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T00C15]
gi|392641997|gb|EIY35769.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL02T12C06]
gi|392643626|gb|EIY37375.1| tRNA dihydrouridine synthase A [Bacteroides dorei CL03T12C01]
Length = 329
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 153/367 (41%), Gaps = 111/367 (30%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+KI+N + K ++L+P+ V + FR +CKK+GAD+ +E A L++S +
Sbjct: 1 MKIRNIDLDKY----PIFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTM 56
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
+ ++ E VQ+ G + + + +++EE D +D+N GCP++ + +G+G+G+
Sbjct: 57 QKLNINDEERPVAVQIYGRDTETMVEAAKIVEEAHP-DILDINFGCPVKRVAGKGAGAGM 115
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
LQ N P +L + VVD V +
Sbjct: 116 LQ-----------NIPLMLEIT------RAVVDAVKI----------------------- 135
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
P+TVKTR G ++ II + + +D G +T+HGRTR Q YT
Sbjct: 136 ---------------PVTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQMYTG 180
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
+ADW I + + N +H
Sbjct: 181 EADWSLIGEV-----KKNPRMH-------------------------------------- 197
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDIY 602
P+ GNGDI + + E + +MIGR + +PWIF+EIK + ++
Sbjct: 198 -----IPIIGNGDITTPQRAKECFDLY-GVDAIMIGRASFGRPWIFKEIKHYIETGKELP 251
Query: 603 AIVWKWR 609
A+ ++WR
Sbjct: 252 ALSFEWR 258
>gi|256838548|ref|ZP_05544058.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298374169|ref|ZP_06984127.1| hypothetical protein HMPREF0104_00320 [Bacteroides sp. 3_1_19]
gi|423333781|ref|ZP_17311562.1| hypothetical protein HMPREF1075_03213 [Parabacteroides distasonis
CL03T12C09]
gi|256739467|gb|EEU52791.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|298268537|gb|EFI10192.1| hypothetical protein HMPREF0104_00320 [Bacteroides sp. 3_1_19]
gi|409227091|gb|EKN19993.1| hypothetical protein HMPREF1075_03213 [Parabacteroides distasonis
CL03T12C09]
Length = 329
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 119/341 (34%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGKDVASMVEAARICEEAHP-DILDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LML----------------------------------------EITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN +I + + +D G + +++HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGAV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTS 208
Query: 561 -------YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+EDY + VMIGR ++ +PWIF+EIK
Sbjct: 209 AEICKQRFEDY--------GVDAVMIGRASIGRPWIFREIK 241
>gi|384097172|ref|ZP_09998293.1| putative tRNA-dihydrouridine synthase 1 [Imtechella halotolerans
K1]
gi|383837140|gb|EID76540.1| putative tRNA-dihydrouridine synthase 1 [Imtechella halotolerans
K1]
Length = 330
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADMLYSEFISSEGLIRDA------IKSKQKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 68 ------------------------------PV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D +D+N GCP++ + +G+G+G+L+ +++ + + + + LP
Sbjct: 79 EAMAMSAKIVE-TVQPDVLDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVIDSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G +++HGRTR Q Y +ADW +I + +
Sbjct: 138 VTVKTRLGWDENSINIDEVAERLQDIGVQALSIHGRTRAQLYKGEADWSHIARV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGD+ +
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E K + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALEYRNKY-GVDGIMIGRAAIGYPWIFNEIKH 243
>gi|218131619|ref|ZP_03460423.1| hypothetical protein BACEGG_03239 [Bacteroides eggerthii DSM 20697]
gi|217985922|gb|EEC52261.1| TIM-barrel protein, nifR3 family [Bacteroides eggerthii DSM 20697]
Length = 327
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK +GAD+ +E + L++S + +K + E +Q+
Sbjct: 13 VLLAPMEDVTDPAFRLMCKNFGADMVYTEFVSSDALIRSVSKTEQKLKISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTDTMVEAARIV-EQAHPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I +SV+ + +P
Sbjct: 121 KML----------------------------------------EITRSVVDAVK----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G N II + + +D G + +T+HGRTR Q YT +ADW I + R
Sbjct: 137 VTVKTRLGWDASNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----R 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +MIGR + +PWIF+E+K
Sbjct: 209 PQRAKECFDRY-GVDAIMIGRASFGRPWIFKEVK 241
>gi|294777525|ref|ZP_06742976.1| TIM-barrel protein, nifR3 family [Bacteroides vulgatus PC510]
gi|319640124|ref|ZP_07994851.1| hypothetical protein HMPREF9011_00448 [Bacteroides sp. 3_1_40A]
gi|345517145|ref|ZP_08796623.1| dehydrogenase [Bacteroides sp. 4_3_47FAA]
gi|254833910|gb|EET14219.1| dehydrogenase [Bacteroides sp. 4_3_47FAA]
gi|294448593|gb|EFG17142.1| TIM-barrel protein, nifR3 family [Bacteroides vulgatus PC510]
gi|317388402|gb|EFV69254.1| hypothetical protein HMPREF9011_00448 [Bacteroides sp. 3_1_40A]
Length = 329
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 147/351 (41%), Gaps = 107/351 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ +E A L++S + + ++ E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGRDTETMVEAAKIVEEAHP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDTVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDIYAIVWKWR 609
+ E + + +MIGR + +PWIF+E+K + ++ A+ ++WR
Sbjct: 209 PQRAKECFDQY-GVDAIMIGRASFGRPWIFKEVKHYIETGKELPALSFEWR 258
>gi|383811997|ref|ZP_09967444.1| TIM-barrel protein, nifR3 family [Prevotella sp. oral taxon 306
str. F0472]
gi|383355383|gb|EID32920.1| TIM-barrel protein, nifR3 family [Prevotella sp. oral taxon 306
str. F0472]
Length = 318
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 138/330 (41%), Gaps = 105/330 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRYGAAMVYTEFVSADAIIRSIKSTLSKMVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LLL----------------------------------------EITREVVKAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G +T+HGRTR Q YT QADW
Sbjct: 137 VTVKTRLGWDTEHLIITDLAEQLQDCGIQALTIHGRTRSQMYTGQADW------------ 184
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
TL G ++ K P+ GNGD+++
Sbjct: 185 --------------------TLIGEVKKNTRIK----------------IPIIGNGDVMN 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+ +E + + VMIGR PWIF
Sbjct: 209 RLEASEKF-DTYGVDAVMIGRATFGCPWIF 237
>gi|373107723|ref|ZP_09522015.1| nifR3 family putative TIM-barrel protein [Stomatobaculum longum]
gi|371650308|gb|EHO15768.1| nifR3 family putative TIM-barrel protein [Stomatobaculum longum]
Length = 332
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 128/335 (38%), Gaps = 108/335 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V +LPFR LC++ GA++ TE++ + + K +E+L +
Sbjct: 12 LMLAPMAGVSDLPFRLLCREQGAELAV------TEMVSAKALHY---KNKATEELL--KS 60
Query: 321 C-GNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
C G+ P VQL G+
Sbjct: 61 CEGDRP---------------------------------------------LAVQLFGSE 75
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P + + + L E+ +D N+GCP+ I G GS L+ + + +I M + S
Sbjct: 76 PEICAEAAEALSERSAFALIDFNMGCPMPKIVNNGDGSKLMTKPELAAEIIAAMAKKSKK 135
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+ VK R G ++ + GA+++T+HGRTREQ Y ADWD I + + S
Sbjct: 136 PVCVKMRAGFTEEEKNAPELAKRLEAAGAAMLTVHGRTREQYYAGTADWDIIRQVKEAVS 195
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGD++
Sbjct: 196 --------------------------------------------------IPVIGNGDVV 205
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
S E L+++ G+ +GR A PWIF+EI+
Sbjct: 206 SGESAARMLRET-GCDGIAVGRAAEGNPWIFREIQ 239
>gi|421095654|ref|ZP_15556367.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str.
200801926]
gi|410362364|gb|EKP13404.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str.
200801926]
gi|456887416|gb|EMF98462.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str.
200701203]
Length = 318
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHKAPKAFKMFRFHPEERPITF 70
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ GN ++++ T++++E + D +D+N+GC + +G+G+GLL+R L G
Sbjct: 71 QIFGNRLEIISEATEIIQE-LEPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAG------ 123
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+++E + +R NI
Sbjct: 124 ---------KIIE--------------------------AMKKRVNI------------- 135
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P+T K R G + + G +T+HGRT+E YT ADWD I
Sbjct: 136 -PVTAKIRIGWDATSRNYLEVSKILEESGIDALTVHGRTKEMAYTGFADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + R P++GNGDI
Sbjct: 188 -------------------------GEVKVNRKI------------------PIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K S+ GV+IGR A+ PWIF E+K+++L
Sbjct: 205 KSFQEANSKINKY-SLDGVLIGRNAIGNPWIFSEVKKEEL 243
>gi|330997166|ref|ZP_08321019.1| TIM-barrel protein, nifR3 family [Paraprevotella xylaniphila YIT
11841]
gi|329570961|gb|EGG52668.1| TIM-barrel protein, nifR3 family [Paraprevotella xylaniphila YIT
11841]
Length = 346
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 137/336 (40%), Gaps = 106/336 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR LCK++GA + SE A L++ + + + E +Q+
Sbjct: 13 VFLAPMEDVTDIGFRLLCKRFGAAMVYSEFVAADALVRMVNRSLEKLAVCDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P + +++ E+ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKEPGPVADAARIVVERARPDVLDLNFGCPVKRVAGKGAGAGMLQ-----------NIP 121
Query: 381 YVLTKCTQLLE-EQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
++LE + VVD VD+
Sbjct: 122 -------KMLEITRAVVDAVDI-------------------------------------- 136
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G + + +I + + +D G +T+HGRTR Q YT +ADW I +
Sbjct: 137 PVTVKTRLGWDESSKVIVDLAERLQDCGIRALTIHGRTRAQMYTGEADWTLIGEV----- 191
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
NN R T P+ GNGDI
Sbjct: 192 -KNN-------------------------PRMT-----------------IPIIGNGDIT 208
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
S E E + + VM+GR +PWIF+EI +
Sbjct: 209 SPERARECFDRY-GVDAVMVGRATFGRPWIFKEITD 243
>gi|313894573|ref|ZP_07828136.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
gi|313440763|gb|EFR59192.1| TIM-barrel protein, nifR3 family [Veillonella sp. oral taxon 158
str. F0412]
Length = 328
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 133/340 (39%), Gaps = 109/340 (32%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
KID G+ L+P+ V ++ +R L K+ GA + C+EM A + + + L++ E E
Sbjct: 12 KID--GQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRLEEVE 69
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+Q+ G+NP + Q++ + A D VD+N+GCP++ + G GS L++ +L
Sbjct: 70 RPVSMQIFGSNPEAIALGAQVVADAGA-DIVDINMGCPVKKVVTSGDGSALMKNPDL--- 125
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
A + ++ + +
Sbjct: 126 ------------------------------------------------AARVAEAAVKAV 137
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
N +P+TVK R G D+ + +F + G + I +HGRT+EQ Y+ ADW YI+
Sbjct: 138 N----VPVTVKMRIGWDSDSINVVDFAKRVESTGVAAIAVHGRTKEQMYSGHADWSYIKA 193
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 194 VKEAVS--------------------------------------------------VPVI 203
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+ ED L ++ VM+GRGA PWIF I
Sbjct: 204 GNGDIVEPEDAKRMLDET-GCDAVMVGRGAQGNPWIFGRI 242
>gi|291526763|emb|CBK92349.1| tRNA-U20-dihydrouridine synthase [Eubacterium rectale M104/1]
Length = 323
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 133/351 (37%), Gaps = 107/351 (30%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
DI +I+ + + L L P+ V +LPFR LCK+ GA + C EM A +
Sbjct: 2 DIHQIRKLQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAI------ 55
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
L K +E L +
Sbjct: 56 ---LYKNKNTESLLSID------------------------------------------- 69
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G++P ++ + + +EE+ D +D+N+GCP+ I G GS L++
Sbjct: 70 ---EREKPVSLQMFGSDPQIMAQIAKQIEER-PFDILDINMGCPVPKIVNNGEGSALMKN 125
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ +I + + P+TVK R G ++ + GAS + +HGRTREQ Y
Sbjct: 126 PILAGQIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYY 185
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+ +ADWD I + + S
Sbjct: 186 SGKADWDIIRQVKEAVS------------------------------------------- 202
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGD+L ED + +++ G MI RGA PWIF +I
Sbjct: 203 -------IPVIGNGDLLCAEDVIK-MQEQTGCDGFMIARGAQGNPWIFSQI 245
>gi|255012934|ref|ZP_05285060.1| putative TIM-barrel enzyme [Bacteroides sp. 2_1_7]
gi|410102135|ref|ZP_11297062.1| tRNA dihydrouridine synthase A [Parabacteroides sp. D25]
gi|409238857|gb|EKN31645.1| tRNA dihydrouridine synthase A [Parabacteroides sp. D25]
Length = 329
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 141/341 (41%), Gaps = 119/341 (34%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGKDVASMVEAARICEEARP-DILDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LML----------------------------------------EITKEVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN +I + + +D G + +++HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGAV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTS 208
Query: 561 -------YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+EDY + VMIGR ++ +PWIF+E+K
Sbjct: 209 AEICKQRFEDY--------GVDAVMIGRASIGRPWIFREVK 241
>gi|255327241|ref|ZP_05368315.1| putative tRNA-dihydrouridine synthase [Rothia mucilaginosa ATCC
25296]
gi|255295521|gb|EET74864.1| putative tRNA-dihydrouridine synthase [Rothia mucilaginosa ATCC
25296]
Length = 430
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V N FRRLC ++G + +EM A L++ P+ +I+ E + +Q+
Sbjct: 66 VVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEHDPDEKIRSIQI 125
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + K +++ E+ D +D+N GCP + ++G G+ L + +LF
Sbjct: 126 YGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLF--------- 176
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I+Q+ + + + +P
Sbjct: 177 ------------------------------------------TAIVQTAVKEASR-NDIP 193
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R GI D+ RD G + I LHGRT Q Y+ +ADWD I AQL
Sbjct: 194 LTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQHYSGKADWDSI---AQL--- 247
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+L P+ GNGDI S
Sbjct: 248 -------------------------------------------RELIPDVPILGNGDIFS 264
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ + GV+IGRG +PW+F +++
Sbjct: 265 AEDAVRMVEQT-GVDGVVIGRGCQGRPWLFGDLQ 297
>gi|409122675|ref|ZP_11222070.1| tRNA-dihydrouridine synthase [Gillisia sp. CBA3202]
Length = 330
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+ M E +SLP
Sbjct: 79 ESMLQSVEIVEKSGP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTKAMVEHTSLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G + I++HGRTR Q Y ADW I K +
Sbjct: 138 VTVKTRLGWDTDSIKIVEVAERLQDVGCAAISIHGRTRVQMYKGNADWAPIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 ENPRMH-------------------------------------------IPVFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PEKAME-MRDKYGLDGAMIGRASIGYPWFFREVK 242
>gi|291526252|emb|CBK91839.1| tRNA-U20-dihydrouridine synthase [Eubacterium rectale DSM 17629]
Length = 328
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 133/351 (37%), Gaps = 107/351 (30%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
DI +I+ + + L L P+ V +LPFR LCK+ GA + C EM A +
Sbjct: 2 DIHQIRKLQIGSVTLPNNLILGPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAI------ 55
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
L K +E L +
Sbjct: 56 ---LYKNKNTESLLSID------------------------------------------- 69
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G++P ++ + + +EE+ D +D+N+GCP+ I G GS L++
Sbjct: 70 ---EREKPVSLQMFGSDPQIMAQIAKQIEER-PFDILDINMGCPVPKIVNNGEGSALMKN 125
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ +I + + P+TVK R G ++ + GAS + +HGRTREQ Y
Sbjct: 126 PILAGRIIESIVKAIDKPVTVKIRKGFDDEHVNAVELAHVAEESGASAVAVHGRTREQYY 185
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+ +ADWD I + + S
Sbjct: 186 SGKADWDIIRQVKEAVS------------------------------------------- 202
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGD+L ED + +++ G MI RGA PWIF +I
Sbjct: 203 -------IPVIGNGDLLCAEDVIK-MQEQTGCDGFMIARGAQGNPWIFSQI 245
>gi|424665655|ref|ZP_18102691.1| hypothetical protein HMPREF1205_01530 [Bacteroides fragilis HMW
616]
gi|404573908|gb|EKA78659.1| hypothetical protein HMPREF1205_01530 [Bacteroides fragilis HMW
616]
Length = 325
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V +L FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDLAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + +MIGRG++ +PWIF+E+K
Sbjct: 209 ATGAKECFERY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|123966327|ref|YP_001011408.1| nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. MIT 9515]
gi|123200693|gb|ABM72301.1| putative nitrogen regulation protein NifR3 family-like protein
[Prochlorococcus marinus str. MIT 9515]
Length = 335
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 116/242 (47%), Gaps = 56/242 (23%)
Query: 356 YKQGSGSGLLQRANL----FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
K+G G+ +++ L GVQ+ N P+ +++ +L E+ +D+N+GCP++ I
Sbjct: 56 LKEGHGTQKIKQLELEQGPIGVQIFDNRPFAVSEAAKLAEDSGAF-LIDINMGCPVKKIS 114
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
K+G GS L++ + ++ +++ +P+TVKTR G I F+ +D GA++I
Sbjct: 115 KKGGGSALIKDRLLAVELVKRVSKAVKIPVTVKTRLGWDNKEENIEEFLLSLQDSGATMI 174
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGRTR++ ++ ADWD I GR +E
Sbjct: 175 TLHGRTRKEGFSGAADWDMI--------------------------------GRIKE--- 199
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
++E P+ NGDI + ED LKK+ + G+MIGRG L PW
Sbjct: 200 -------HLE--------IPVIANGDIKTPEDAFNCLKKTNA-DGLMIGRGILGSPWKIG 243
Query: 592 EI 593
EI
Sbjct: 244 EI 245
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 76/137 (55%), Gaps = 7/137 (5%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSS 300
+ +IK++ +I K+ LSPL V + FR+L +KW D + +EM AT L +
Sbjct: 2 SSVIKLRGKGLSRI-INSKVMLSPLAGVTDKVFRKLVRKWAPDSLLFTEMINATSLKEGH 60
Query: 301 PQEWALIKRHESED-LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
+ IK+ E E GVQ+ N P+ +++ +L E+ A +D+N+GCP++ I K+G
Sbjct: 61 GTQK--IKQLELEQGPIGVQIFDNRPFAVSEAAKLAEDSGAF-LIDINMGCPVKKISKKG 117
Query: 360 SGSGLLQRANLFGVQLC 376
GS L+ + L V+L
Sbjct: 118 GGSALI-KDRLLAVELV 133
>gi|313149838|ref|ZP_07812031.1| dehydrogenase [Bacteroides fragilis 3_1_12]
gi|313138605|gb|EFR55965.1| dehydrogenase [Bacteroides fragilis 3_1_12]
Length = 325
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 139/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V +L FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDLAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + +MIGRG++ +PWIF+E+K
Sbjct: 209 ATGAKECFERY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|116326862|ref|YP_796582.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116329809|ref|YP_799527.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116119606|gb|ABJ77649.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123498|gb|ABJ74769.1| tRNA-dihydrouridine synthase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 318
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHKAPKAFKMFRFHPEERPITF 70
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ GN ++++ T++++E + D +D+N+GC + +G+G+GLL+R L G
Sbjct: 71 QIFGNRLEIISEATEIIQE-LEPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAG------ 123
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+++E + +R NI
Sbjct: 124 ---------KIIE--------------------------AMKKRVNI------------- 135
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P+T K R G + + G +T+HGRT+E YT ADWD I
Sbjct: 136 -PVTAKIRIGWDATSRNYLEVSKILEESGIDALTVHGRTKEMAYTGFADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + R P++GNGDI
Sbjct: 188 -------------------------GEVKVNRKI------------------PIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K S+ GV+IGR A+ PWIF E+K+++L
Sbjct: 205 KSFQEANSKINKY-SLDGVLIGRNAIGNPWIFSEVKKEEL 243
>gi|88802043|ref|ZP_01117571.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Polaribacter irgensii 23-P]
gi|88782701|gb|EAR13878.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Polaribacter irgensii 23-P]
Length = 333
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/352 (25%), Positives = 149/352 (42%), Gaps = 109/352 (30%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR LCK+ GAD+ V TE + S
Sbjct: 1 MVKIGNIELPEF----PLLLAPMEDVSDPPFRALCKENGADV------VYTEFISSE--- 47
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
LI R ++ L M +D
Sbjct: 48 -GLI-RDAAKSL-----------------------MKLD--------------------- 61
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+ ++ G+Q+ G N + + +++E+ D +D+N GCP++ + +G+G+G+L+
Sbjct: 62 IYEKERPVGIQIFGANLESMLRTIEIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILKDI 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ S+ M + ++LPITVKTR G D+ I + +D G + I++HGRTR Q Y
Sbjct: 121 DLMVSLTEAMVKHTNLPITVKTRLGWDHDSIRIVEVAERLQDVGCAAISIHGRTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW I ++N +H
Sbjct: 181 GEADWKPIAAV-----KNNQRMH------------------------------------- 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P++GNGD+ + E E ++ S + G MIGR A+ PW F E+K
Sbjct: 199 ------IPVFGNGDVTTPEKAME-MRDSYGLDGAMIGRAAIGYPWFFNEVKH 243
>gi|418735567|ref|ZP_13291977.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410748701|gb|EKR01595.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 318
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHKAPKAFKMFRFHPEERPITF 70
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ GN ++++ T++++E + D +D+N+GC + +G+G+GLL+R L G
Sbjct: 71 QIFGNRLEIISEATEIIQE-LEPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAG------ 123
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+++E + +R NI
Sbjct: 124 ---------KIIE--------------------------AMKKRVNI------------- 135
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P+T K R G + + G +T+HGRT+E YT ADWD I
Sbjct: 136 -PVTAKMRIGWDATSRNYLEVSKILEESGIDALTVHGRTKEMAYTGFADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + R P++GNGDI
Sbjct: 188 -------------------------GEVKVNRKI------------------PIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K S+ GV+IGR A+ PWIF E+K+++L
Sbjct: 205 KSFQEANSKINKY-SLDGVLIGRNAIGNPWIFSEVKKEEL 243
>gi|150003654|ref|YP_001298398.1| dehydrogenase [Bacteroides vulgatus ATCC 8482]
gi|149932078|gb|ABR38776.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Bacteroides vulgatus ATCC 8482]
Length = 329
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 107/351 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ +E A L++S + + ++ E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGRDTETMVAAAKIVEEAHP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDTVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDIYAIVWKWR 609
+ E + + +MIGR + +PWIF+E+K + ++ A+ ++WR
Sbjct: 209 PQRAKECFDQY-GVDAIMIGRASFGRPWIFKEVKHYIETGKELPALSFEWR 258
>gi|418721174|ref|ZP_13280358.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str. UI
09149]
gi|410742241|gb|EKQ90990.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str. UI
09149]
Length = 318
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHKAPKAFKMFRFHPEERPITF 70
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ GN ++++ T++++E + D +D+N+GC + +G+G+GLL+R L G
Sbjct: 71 QIFGNRLEIISEATEIIQE-LEPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAG------ 123
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+++E + +R NI
Sbjct: 124 ---------KIIE--------------------------AMKKRVNI------------- 135
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P+T K R G + + G +T+HGRT+E YT ADWD I
Sbjct: 136 -PVTAKIRIGWDATSRNYLEVSKILEESGIDALTVHGRTKEMAYTGFADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + R P++GNGDI
Sbjct: 188 -------------------------GEVKVNRKI------------------PIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K S+ GV+IGR A+ PWIF E+K+++L
Sbjct: 205 KSFQEANSKINKY-SLDGVLIGRNAIGNPWIFSEVKKEEL 243
>gi|365960847|ref|YP_004942414.1| tRNA-dihydrouridine synthase [Flavobacterium columnare ATCC 49512]
gi|365737528|gb|AEW86621.1| tRNA-dihydrouridine synthase [Flavobacterium columnare ATCC 49512]
Length = 327
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D +D+N GCP++ + +G+G+G+L+ +++ + + ++LP
Sbjct: 79 EAMAMSAKIVE-TVQPDLLDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + +D G +T+HGRTR Q Y +DW +I +
Sbjct: 138 VTVKTRLGWDDASINIDEVAERLQDVGIQALTIHGRTRAQMYKGHSDWSHIARVK----- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P++GNGDI S
Sbjct: 193 -NN------PRIK------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E K + + G+MIGR A+ PWIF EIK
Sbjct: 210 AEKALE-YKNTYGLDGIMIGRAAIGYPWIFNEIKH 243
>gi|335044796|ref|ZP_08537819.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
gi|333758582|gb|EGL36139.1| TIM-barrel protein, nifR3 family [Oribacterium sp. oral taxon 108
str. F0425]
Length = 352
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/344 (23%), Positives = 138/344 (40%), Gaps = 114/344 (33%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ G + ++P+ V +LP+R LCK+
Sbjct: 42 KVQLPGNILMAPMAGVTDLPYRILCKE--------------------------------- 68
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG- 372
GV L CT+++ + +Y + LL++ G
Sbjct: 69 --MGVSLT---------CTEMVSAK--------------AILYGNKNTDSLLEKGEEPGK 103
Query: 373 --VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQL G++P ++ + + +EE D +DVN+GCP+ + + G GS L++ + + V+
Sbjct: 104 RAVQLFGSDPEIMAEMAKRVEEDF--DIIDVNMGCPVPKVVRNGEGSALMENLPLAEKVL 161
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
M + S+PITVK R G D+ + +F+ + G S I +HGRTREQ Y +ADW++
Sbjct: 162 RSMVKAVSIPITVKCRLGFTDDHINVLDFVKSAENAGVSAIVVHGRTREQYYRGKADWEW 221
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + + +H
Sbjct: 222 IRRAKE-------AVH-------------------------------------------I 231
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
PL+GNGDI + ED L S + G+ +GRG P++ + I+
Sbjct: 232 PLFGNGDIFTEEDAMAML-LSTGVDGISLGRGVQGNPFLIRRIR 274
>gi|153815945|ref|ZP_01968613.1| hypothetical protein RUMTOR_02190 [Ruminococcus torques ATCC 27756]
gi|317500709|ref|ZP_07958927.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089816|ref|ZP_08338709.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336438499|ref|ZP_08618132.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
gi|145846764|gb|EDK23682.1| TIM-barrel protein, nifR3 family [Ruminococcus torques ATCC 27756]
gi|316897903|gb|EFV19956.1| tRNA-dihydrouridine synthase B [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403513|gb|EGG83071.1| hypothetical protein HMPREF1025_02292 [Lachnospiraceae bacterium
3_1_46FAA]
gi|336019133|gb|EGN48865.1| hypothetical protein HMPREF0990_00526 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 319
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/339 (24%), Positives = 139/339 (41%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + + L P+ V +LPFR LCK+ GA + EM A +L + L++ H
Sbjct: 9 VELENRYLLGPMAGVTDLPFRLLCKEQGAGLLGMEMVSAKAILYQNKNTEKLMEIHP--- 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
EEQ P+ Q
Sbjct: 66 ---------------------EEQ------------PVSL-------------------Q 73
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++++ + +EE+ +D+N+GCP+ + K G GS L++ +++ ++ +
Sbjct: 74 LFGSDPKIMSEMAKRIEERPFA-ILDINMGCPVPKVVKNGEGSALMKNPSLVYEIVNAIV 132
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+TVK R G F D + + + R ++A
Sbjct: 133 KAIEKPVTVKIRKG--------------FDDAHVNAVEV------ARAAEEA-------- 164
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
GAS + +HGRTREQ Y+ +ADWD I + + S P+ G
Sbjct: 165 ---------------------GASAVAVHGRTREQYYSGEADWDIIRQVKEAVS-IPVIG 202
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGD+ + E E L ++ G+MI RGA PWIF E+
Sbjct: 203 NGDVTTPEK-AEELVQTTGCDGIMIARGAQGNPWIFSEM 240
>gi|410938954|ref|ZP_11370794.1| TIM-barrel protein, nifR3 family [Leptospira noguchii str.
2006001870]
gi|410786155|gb|EKR75106.1| TIM-barrel protein, nifR3 family [Leptospira noguchii str.
2006001870]
Length = 325
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 142/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GK+ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + E
Sbjct: 11 GKISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRYKPEEH---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL+R + +I + + +
Sbjct: 76 RLEIIAEAAEIVQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G W A+ +Y+E L
Sbjct: 135 VPVTAKIRIG-----------------WDAT-----------------SRNYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ G +T+HGRT+E YT ADWD I + +L P++GNGDI
Sbjct: 160 --------------EESGVDALTVHGRTKEMAYTGFADWDAIGEV-KLNRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K S+ GV+IGR A+ PWIF +K++KL
Sbjct: 205 KSFQEANSKIDKY-SLDGVLIGRNAIGNPWIFSGVKKEKL 243
>gi|331268356|ref|YP_004394848.1| putative TIM-barrel protein, nifR3 family [Clostridium botulinum
BKT015925]
gi|329124906|gb|AEB74851.1| putative TIM-barrel protein, nifR3 family [Clostridium botulinum
BKT015925]
Length = 320
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 98/223 (43%), Gaps = 51/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
Q+ G++P V+ + ++L E V +D+N+GCP I K G GS L++ + ++
Sbjct: 68 AAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIVKNGEGSALMKTPELAAEIVL 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M ++S P+TVK R G DN F + GA I +HGRTR Q Y +ADWD I
Sbjct: 128 EMKKISKKPVTVKFRKGFDNDNINAIEFAKRMEQAGADAIAIHGRTRAQMYEGKADWDII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + + P
Sbjct: 188 RRVKESVN--------------------------------------------------IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGD+ S E + L++ + G+MI RGA+ PWIF++I+
Sbjct: 198 VIGNGDVFSAEKAFQ-LREETNCDGIMIARGAMGNPWIFKQIQ 239
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 63/116 (54%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V ++ +R LCK+ G + +EM A + ++ L+ + E
Sbjct: 6 LNFENNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYNNENTKKLLMLSKEEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
Q+ G++P V+ + ++L E V +D+N+GCP I K G GS L++ L
Sbjct: 66 PVAAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIVKNGEGSALMKTPEL 121
>gi|283458530|ref|YP_003363158.1| tRNA -dihydrouridine synthase [Rothia mucilaginosa DY-18]
gi|283134573|dbj|BAI65338.1| tRNA-dihydrouridine synthase [Rothia mucilaginosa DY-18]
Length = 442
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V N FRRLC ++G + +EM A L++ P+ +I+ E + +Q+
Sbjct: 78 VVLAPMAGVTNKAFRRLCSEYGGGLYVTEMVTARALVERKPESMRIIEHDPDEKIRSIQI 137
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + K +++ E+ D +D+N GCP + ++G G+ L + +LF
Sbjct: 138 YGVDAVNVGKAVRMVVEEDRADHIDLNFGCPAPKVTRRGGGAALPWKTDLF--------- 188
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I+Q+ + + + +P
Sbjct: 189 ------------------------------------------TAIVQTAVKEASR-NDIP 205
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R GI D+ RD G + I LHGRT Q Y+ +ADWD I AQL
Sbjct: 206 LTIKMRKGIDDDHITFLESAKIARDAGVAAIALHGRTAAQHYSGKADWDSI---AQL--- 259
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+L P+ GNGDI S
Sbjct: 260 -------------------------------------------RELIPDVPILGNGDIFS 276
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ + GV+IGRG +PW+F +++
Sbjct: 277 AEDAVRMVEQT-GVDGVVIGRGCQGRPWLFGDLQ 309
>gi|295394807|ref|ZP_06805022.1| dihydrouridine synthase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972403|gb|EFG48263.1| dihydrouridine synthase [Brevibacterium mcbrellneri ATCC 49030]
Length = 382
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 134/341 (39%), Gaps = 105/341 (30%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P+ + N FRRLC+++GA + +EM L++ SP+ +I HE
Sbjct: 13 IELDSPVVLAPMAGITNTAFRRLCREYGAGLYVTEMVTTRALVERSPKSMRIIH-HE--- 68
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
PY + VQ
Sbjct: 69 ----------PYETPRS-----------------------------------------VQ 77
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-TCM 433
L G +P + + ++L E+ D +D+N GCP+ + ++G GS L + ++ +++ T +
Sbjct: 78 LYGVDPVTVGQAVRMLVEEDRADHIDLNFGCPVPKVTRKGGGSALPWKIDLFTAIVTTAV 137
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E +P+TVK R GI D+ + G + +TLHGRT Y+ ADWD I +
Sbjct: 138 REAGDIPVTVKMRKGIDADHLTYLDAGQIAARAGVAAMTLHGRTTADLYSGTADWDAIAR 197
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
K D I P+
Sbjct: 198 L--------------------------------------KDTIGDAI----------PVL 209
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGDI S ED + K+ GV+IGRG +PW+F +++
Sbjct: 210 GNGDIFSAEDAQAMMAKT-GCDGVVIGRGCQGRPWLFGDLQ 249
>gi|423313199|ref|ZP_17291135.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
gi|392686413|gb|EIY79719.1| tRNA dihydrouridine synthase A [Bacteroides vulgatus CL09T03C04]
Length = 329
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 146/351 (41%), Gaps = 107/351 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ +E A L++S + + ++ E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVGKTMQKLNINDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGRDTETMVEAAKIAEEAHP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDTVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDNEHKIIVDLAEQLQDCGIEALTIHGRTRAQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDIYAIVWKWR 609
+ E + + +MIGR + +PWIF+E+K + ++ A+ ++WR
Sbjct: 209 PQRAKECFDQY-GVDAIMIGRASFGRPWIFKEVKHYIETGKELPALSFEWR 258
>gi|253681232|ref|ZP_04862030.1| tRNA-dihydrouridine synthase B [Clostridium botulinum D str. 1873]
gi|253562470|gb|EES91921.1| tRNA-dihydrouridine synthase B [Clostridium botulinum D str. 1873]
Length = 320
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 98/223 (43%), Gaps = 51/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
Q+ G++P V+ + ++L E V +D+N+GCP I K G GS L++ + ++
Sbjct: 68 AAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIVKNGEGSALMKTPELAAKIVM 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M ++S P+TVK R G DN F + G + +HGRTR Q Y +ADWD I
Sbjct: 128 EMKKISKKPVTVKFRKGFDNDNINAVEFAKRMEQAGVDAVAIHGRTRAQMYEGKADWDII 187
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
R K+A P
Sbjct: 188 --------------------------------------RRVKEA------------VDIP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGD+ S E + LK+ + G+MI RGA+ PWIF++I+
Sbjct: 198 VIGNGDVFSAEKAFQ-LKEETNCDGIMIARGAMGNPWIFKQIQ 239
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 63/116 (54%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V ++ +R LCK+ G + +EM A + ++ L+ + E
Sbjct: 6 LNFKNNVFLAPMAGVTDIAYRGLCKEMGCGLVYTEMISAKGMYYNNENTKKLLMLSKEEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
Q+ G++P V+ + ++L E V +D+N+GCP I K G GS L++ L
Sbjct: 66 PVAAQIFGSDPLVMARACEILNEDNGVCIIDINMGCPAPKIVKNGEGSALMKTPEL 121
>gi|224537320|ref|ZP_03677859.1| hypothetical protein BACCELL_02198 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521051|gb|EEF90156.1| hypothetical protein BACCELL_02198 [Bacteroides cellulosilyticus
DSM 14838]
Length = 329
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ +E A L++S + + + E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAARIVEEARP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI S
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PWIF+E++
Sbjct: 209 PQRAKECFDLY-GVDAIMIGRASFGRPWIFKEVR 241
>gi|83814729|ref|YP_446617.1| NifR3 family protein [Salinibacter ruber DSM 13855]
gi|83756123|gb|ABC44236.1| NifR3 family enzyme [Salinibacter ruber DSM 13855]
Length = 443
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + PFR LCK++GAD+ +E + LL+ + HE + L
Sbjct: 77 LFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLRE--------QEHEHQKL----- 123
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ +E+ + G+Q+ G
Sbjct: 124 ------------EIFDEERPI------------------------------GIQVWGGGI 141
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ T +++ D +D+N GCP+ I ++ G+G+L+ + ++++ + E ++ P
Sbjct: 142 DEVRNATPMVD-AAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNITAAVMEEATRP 200
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + D G + +T+H RTREQ+Y A W+++ + +R
Sbjct: 201 VTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGDARWEWLRTIKEEGTR 260
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D MP GNGD L
Sbjct: 261 D-------MP-----------------------------------------FIGNGDALD 272
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E++ + + GVM+GRGAL PWIF+ K
Sbjct: 273 PE-AIEAMFEETGVDGVMLGRGALGNPWIFERAK 305
>gi|451948385|ref|YP_007468980.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
gi|451907733|gb|AGF79327.1| tRNA-U20-dihydrouridine synthase [Desulfocapsa sulfexigens DSM
10523]
Length = 311
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 130/329 (39%), Gaps = 107/329 (32%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PL +LPFR LC+++GA + SEM L+
Sbjct: 15 LAPLAGYSDLPFRLLCREYGAGLVVSEMISCHGLI------------------------- 49
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
Y K Q+L +A P+ F QL G++P +
Sbjct: 50 ---YGQKKTFQMLASSVAER--------PVSF-------------------QLFGSDPVI 79
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+ K LL E F+D+N+GCP+ + K+G+GS L++ + + +I + S++P+T
Sbjct: 80 MGKAAALLCEHSP-SFIDINMGCPVRKVTKKGAGSALMKDIPLAEKIIQAVIAHSTVPVT 138
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
VKTR GI + +F G + IT+HGRT Q ++ ADW+ I + S
Sbjct: 139 VKTRAGIDNGHITAIDFAKMCESSGVAAITVHGRTWAQAFSGSADWNIIRQVKDTVS--- 195
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
P+ GNGD+ SY+
Sbjct: 196 -----------------------------------------------IPVIGNGDVHSYK 208
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQ 591
+ + ++ G+MIGR AL PW+FQ
Sbjct: 209 EGLLRMDET-GCDGIMIGRAALGNPWVFQ 236
>gi|294508555|ref|YP_003572614.1| tRNA-dihydrouridine synthase B [Salinibacter ruber M8]
gi|294344884|emb|CBH25662.1| tRNA-dihydrouridine synthase B [Salinibacter ruber M8]
Length = 492
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + PFR LCK++GAD+ +E + LL+ + HE + L
Sbjct: 126 LFLAPMEDVSDPPFRILCKRYGADMMYTEFVSSAGLLRE--------QEHEHQKL----- 172
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ +E+ + G+Q+ G
Sbjct: 173 ------------EIFDEERPI------------------------------GIQVWGGGI 190
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ T +++ D +D+N GCP+ I ++ G+G+L+ + ++++ + E ++ P
Sbjct: 191 DEVRNATPMVD-AAGPDVIDINFGCPVRKIVQKDGGAGVLRNLDKMRNITAAVMEEATRP 249
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + D G + +T+H RTREQ+Y A W+++ + +R
Sbjct: 250 VTVKTRLGWDDDSIHIVDVARMLEDMGVAALTVHARTREQKYKGDARWEWLRTIKEEGTR 309
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D MP GNGD L
Sbjct: 310 D-------MP-----------------------------------------FIGNGDALD 321
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E++ + + GVM+GRGAL PWIF+ K
Sbjct: 322 PE-AIEAMFEETGVDGVMLGRGALGNPWIFERAK 354
>gi|210610329|ref|ZP_03288358.1| hypothetical protein CLONEX_00548 [Clostridium nexile DSM 1787]
gi|210152559|gb|EEA83565.1| hypothetical protein CLONEX_00548 [Clostridium nexile DSM 1787]
Length = 324
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 135/341 (39%), Gaps = 107/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LCK+ GA + C EM A + ++ AL++ H E
Sbjct: 9 VELENPYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQYNNKNTKALLEIHPEEL 68
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+QL G++P V+++ + +EE + +D+N+GCP+ I K G GS L++ L
Sbjct: 69 PVSLQLFGSDPDVISEIAKRIEE-LPFSILDINMGCPVPKIVKNGEGSALMKNPKLV--- 124
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
Y + + T ++ P+ ++G TC+N
Sbjct: 125 ------YEIVRKTARAIQK------------PVTVKIRKGFDD-------------TCIN 153
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
V I D G + +HGRTREQ Y+ +ADWD I +
Sbjct: 154 AVEIAKI---------------------IEDAGGKAVAVHGRTREQYYSGKADWDIIRQV 192
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 193 KEAVS--------------------------------------------------IPVIG 202
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGD++S E +++K GVMIGRGA PWIF E+ E
Sbjct: 203 NGDVVSGESAI-AIQKETGCDGVMIGRGAQGNPWIFSELLE 242
>gi|110636783|ref|YP_676990.1| NifR3 family TIM-barrel protein [Cytophaga hutchinsonii ATCC 33406]
gi|110279464|gb|ABG57650.1| tRNA-U20-dihydrouridine synthase [Cytophaga hutchinsonii ATCC
33406]
Length = 329
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/334 (25%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E A L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKQQGADMMYTEFIAAEGLIRDAAKSVHKLDIFDYERPMGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ V+ + EE + VD+N GCP++ + +G+GSG L
Sbjct: 74 FGDKIDVMCDAAAIAEEA-GPELVDINFGCPVKKVACKGAGSGALLD------------- 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K ++ EE +++R + P
Sbjct: 120 --IPKMVKMTEE--------------------------IVKRCTL--------------P 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + + +D G +T+HGRTR+Q Y +ADW +I K +
Sbjct: 138 VTVKTRLGWDHDSIHIVDIARRLQDVGIKALTIHGRTRQQMYKGEADWSWIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ IH P++GNGDI S
Sbjct: 193 EQQDIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K + G+MIGR A+ PWIF+E+K
Sbjct: 210 PEKALE-YKNRYGVDGIMIGRAAIGYPWIFKEVK 242
>gi|423226122|ref|ZP_17212588.1| tRNA dihydrouridine synthase A [Bacteroides cellulosilyticus
CL02T12C19]
gi|392630551|gb|EIY24542.1| tRNA dihydrouridine synthase A [Bacteroides cellulosilyticus
CL02T12C19]
Length = 329
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ +E A L++S + + + E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADMVYTEFVSADALIRSVSKTEQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAARIVEEARP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI S
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PWIF+E++
Sbjct: 209 PQRAKECFDLY-GVDAIMIGRASFGRPWIFKEVR 241
>gi|299144544|ref|ZP_07037623.1| tRNA-dihydrouridine synthase [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517632|gb|EFI41372.1| tRNA-dihydrouridine synthase [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 313
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/347 (26%), Positives = 139/347 (40%), Gaps = 111/347 (31%)
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KKKID LSPL ++ FR +C + A +T +EM A L + L+K
Sbjct: 2 KKKIDGA---ILSPLAGYTDIAFREICSQKNAYMTVTEMISAKALYYGDKKTNELLKVSP 58
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
E VQ+ G++P ++ + + +D+N+GCP I K +GS LL + NL
Sbjct: 59 FEKNVAVQIFGDDPDIMGYVVKNSLNSLNFSCIDINMGCPAPKIVKNNNGSALLDQPNL- 117
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+I++SV+
Sbjct: 118 --------------------------------------------------AYSIIRSVV- 126
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
E S++P++VK R GI N++ + GAS IT+HGRTRE+ Y+ +DW+YI
Sbjct: 127 ---ENSNVPVSVKIRKGIRNTNSM--EVARLAQKAGASFITVHGRTREEYYSGLSDWNYI 181
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ +L P
Sbjct: 182 KSVVD------------------------------------------------ELTIP-- 191
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
+ GNGD+ SYED E +K S +SGV IGRGA+ P+IF EI +K +
Sbjct: 192 VIGNGDVQSYEDAMEKIKFS-GVSGVSIGRGAIGNPFIFDEIYKKSI 237
>gi|429737900|ref|ZP_19271737.1| TIM-barrel protein, nifR3 family [Prevotella saccharolytica F0055]
gi|429161527|gb|EKY03920.1| TIM-barrel protein, nifR3 family [Prevotella saccharolytica F0055]
Length = 326
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 137/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A L++S + + E G+QL
Sbjct: 13 LFLAPMEDVTDIGFRLLCKRFGAAMVYTEFVSAEALVRSIKATVNKLTISDDERPVGIQL 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGRDADAMVEAARIV-EQSRPDVIDLNFGCPVKKVASKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L D+ ++Q+V T P
Sbjct: 121 LML----------------DIT--------------------RRVVQAVKT--------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN +I + +D G +T+HGRTR Q YT QADW I + +
Sbjct: 137 VTVKTRLGWDSDNLVITTLAEQLQDCGIQALTIHGRTRAQMYTGQADWTLIGEVKR---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI +
Sbjct: 193 -NPRIH-------------------------------------------IPIIGNGDIST 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
ED + + + VMIGR + W+F+EI +
Sbjct: 209 PEDARAAF-DTYGVDAVMIGRATFGRAWVFKEIHD 242
>gi|333384100|ref|ZP_08475743.1| hypothetical protein HMPREF9455_03909 [Dysgonomonas gadei ATCC
BAA-286]
gi|332826846|gb|EGJ99646.1| hypothetical protein HMPREF9455_03909 [Dysgonomonas gadei ATCC
BAA-286]
Length = 330
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L++ + A + E E +Q+
Sbjct: 13 VFLAPMEDVTDMGFRLMCKRFGADMVYTEFVSSDALIRHVNKTQAKLTISEEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + ++ EE + D +D+N GCP++ + +G+GSG+++ L
Sbjct: 73 YGREVDAMVEAAKICEEA-SPDILDINFGCPVKKVAGKGAGSGMMRTPELM--------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I +V+ +N +P
Sbjct: 123 ------------------------------------------VEITAAVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + +D G +TLHGRTR Q Y+ +ADW I +
Sbjct: 137 VTVKTRLGWDNDSKIIVELAEQLQDTGIQALTLHGRTRAQMYSGEADWSLIGAV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + VMIGRG++ PWIF+E+K
Sbjct: 209 PEICKRRFDET-GVDAVMIGRGSIGGPWIFEEVK 241
>gi|374307804|ref|YP_005054235.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
gi|291166185|gb|EFE28231.1| TIM-barrel protein, NifR3 family [Filifactor alocis ATCC 35896]
Length = 319
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/349 (23%), Positives = 139/349 (39%), Gaps = 111/349 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+KI N E K G ++L+P+ + + PFR +C ++GA +T +EM A L W
Sbjct: 1 MKIGNYETK-----GNIFLAPMAGINDFPFRLMCHRYGAVLTYTEMINAKALCYGDENTW 55
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
+++ H E +Q+ GN P + + + +E+ +D+N+GCP + K G GS L
Sbjct: 56 KMMQVHPDEGDVAIQIFGNEPEFIAEAVRKIEQLSRFVLIDINMGCPAPKVVKNGDGSAL 115
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+++ L Q +V+ N P+ +++G S
Sbjct: 116 MKKPEL---------------------AQKIVETAKQNTILPVTVKFRKGWDS------- 147
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+V++L F + ++ GA +T+HGRTRE+ Y+
Sbjct: 148 ---------TQVNAL------------------EFAKQMQEAGADAVTVHGRTREEFYSG 180
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW+ +++ + YI
Sbjct: 181 VADWNIVKEIKKAL----------------------------------------YI---- 196
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDI E + E +K S S+ VMIGRGA P++F +
Sbjct: 197 ------PVIGNGDIKDQETFEERVKLS-SVDAVMIGRGAQGNPFLFNSL 238
>gi|298372677|ref|ZP_06982667.1| hypothetical protein HMPREF0156_00722 [Bacteroidetes oral taxon 274
str. F0058]
gi|298275581|gb|EFI17132.1| hypothetical protein HMPREF0156_00722 [Bacteroidetes oral taxon 274
str. F0058]
Length = 325
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/338 (24%), Positives = 137/338 (40%), Gaps = 105/338 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CK++GAD+ +E A L++ + + + E +Q+
Sbjct: 13 VFLAPMEDVTDPAFRLVCKEFGADLVYTEFVSADALVRFVNRTMQKLTIVDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + +++ E D +D+N GCP++ I +G+G+GLL+ + P
Sbjct: 73 YGKDPQTMVDAAKIVAESNP-DIIDINFGCPVKKIASKGAGAGLLR-----------DIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L +I QSV+ +N LP
Sbjct: 121 RLL----------------------------------------DITQSVVKAVN----LP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + +D G + + +HGRTR Q YT +ADW
Sbjct: 137 VTVKTRLGWDDNSKIICTLARQLQDCGIAALAIHGRTRSQMYTGEADW------------ 184
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
TL G + K P+ GNGDI +
Sbjct: 185 --------------------TLIGEVKNDPKIK----------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
E + + + +M+GRGA+ WIF EIK + L
Sbjct: 209 PEVAEDKFHRY-GVDAIMVGRGAIGNAWIFAEIKNRLL 245
>gi|294056396|ref|YP_003550054.1| nifR3 family TIM-barrel protein [Coraliomargarita akajimensis DSM
45221]
gi|293615729|gb|ADE55884.1| TIM-barrel protein, nifR3 family [Coraliomargarita akajimensis DSM
45221]
Length = 333
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 131/338 (38%), Gaps = 105/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
Q LYL+P+ ++ FR+ CK+ GAD+ +E A + + + W + ES+ G
Sbjct: 9 QFPLYLAPMARFTDIVFRQFCKEQGADVMVTEFVQADAITRGDDRLWETVDFTESQRPMG 68
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
VQ+ G+NP + + +++ ++M DF+D+N GCP E + +GS +L+
Sbjct: 69 VQIFGSNPVTMGQAARMIVDRMQPDFIDINFGCPAERVICMDAGSSMLR----------- 117
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
NP L ++ +VI V
Sbjct: 118 -NPRKL---------------------------------------GTVVAAVIKA---VP 134
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
P+T K RTG D + G + +HGRT+ Q Y +A+W I + A+
Sbjct: 135 DTPVTAKIRTGWDDDTIVAKEVGHIVESEGGQALAIHGRTKMQGYRGEANWPIIAEVAEE 194
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ P+ GNG+
Sbjct: 195 LT--------------------------------------------------IPVIGNGN 204
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
I S ED ++++ +G+MIGR AL PWIF++IK
Sbjct: 205 IRSAEDVIR-IRETTRCAGLMIGRAALGYPWIFRDIKH 241
>gi|301312349|ref|ZP_07218266.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 20_3]
gi|423337218|ref|ZP_17314962.1| hypothetical protein HMPREF1059_00887 [Parabacteroides distasonis
CL09T03C24]
gi|300829771|gb|EFK60424.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 20_3]
gi|409238406|gb|EKN31199.1| hypothetical protein HMPREF1059_00887 [Parabacteroides distasonis
CL09T03C24]
Length = 329
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 140/341 (41%), Gaps = 119/341 (34%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK +GAD+ +E + L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKSFGADMVYTEFVSSDALIRSVNKTQQKLNVSDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGKDVASMVEAARICEEARP-DILDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LML----------------------------------------EITKEVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN +I + + +D G + +++HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDADNRVIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGAV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTS 208
Query: 561 -------YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+EDY + VMIGR ++ +PWIF+E+K
Sbjct: 209 AEICKQRFEDY--------GVDAVMIGRASIGRPWIFREVK 241
>gi|262382918|ref|ZP_06076055.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295796|gb|EEY83727.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 329
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 141/341 (41%), Gaps = 119/341 (34%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L+++ + + + E +Q+
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADMVYTEFVSSDALIRNVNKTQQKLNVSDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + ++ EE D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGKDVASMVEAARICEEARP-DILDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LML----------------------------------------EITREVVKAVN----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G + +++HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDADNRIIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGAV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ S
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTS 208
Query: 561 -------YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+EDY + VMIGR ++ +PWIF+E+K
Sbjct: 209 AEICKQRFEDY--------GVDAVMIGRASIGRPWIFREVK 241
>gi|372209513|ref|ZP_09497315.1| nifR3 family TIM-barrel protein [Flavobacteriaceae bacterium S85]
Length = 334
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDAAKSVKKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G N + + +++E D +D+N GCP++ + +G+G+G+L+ +L V+L
Sbjct: 74 FGANLESMLRTVEIVEASKP-DIIDINFGCPVKKVVSRGAGAGILKDIDLM-VKLTD--- 128
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K T+L P
Sbjct: 129 -AMVKHTKL--------------------------------------------------P 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ +I + +D G + I++HGRTR Q Y ADW I +
Sbjct: 138 VTVKTRLGWDENSIMIEEVAERLQDVGCAAISIHGRTRAQMYKGNADWTRIAAV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVNT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PERAIE-MRDEYGLDGAMIGRASIGNPWFFKEVK 242
>gi|238019651|ref|ZP_04600077.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
gi|237863692|gb|EEP64982.1| hypothetical protein VEIDISOL_01525 [Veillonella dispar ATCC 17748]
Length = 328
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 133/340 (39%), Gaps = 109/340 (32%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
KID G+ L+P+ V ++ +R L K+ GA + C+EM A + + + L++ E E
Sbjct: 12 KID--GQAILAPMAGVSDIAYRLLAKEHGAALVCTEMVSAMGIKYKNERTHELLRIEEVE 69
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+Q+ G+NP + +++ + A D VD+N+GCP++ + G GS L++
Sbjct: 70 RPVSMQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVTSGDGSALMK------- 121
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
NP + + + V VDV
Sbjct: 122 -----NPDLAARVA-----EAAVKAVDV-------------------------------- 139
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
P+TVK R G D+ + +F + G + I +HGRT+EQ Y+ ADW YI+
Sbjct: 140 ------PVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSGHADWSYIKA 193
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 194 VKEAVS--------------------------------------------------VPVI 203
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+ ED + L ++ VM+GRGA PWIF I
Sbjct: 204 GNGDIVEPEDAKQMLDET-GCDAVMVGRGAQGNPWIFNRI 242
>gi|167745535|ref|ZP_02417662.1| hypothetical protein ANACAC_00226 [Anaerostipes caccae DSM 14662]
gi|167655256|gb|EDR99385.1| TIM-barrel protein, nifR3 family [Anaerostipes caccae DSM 14662]
Length = 332
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 134/340 (39%), Gaps = 109/340 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P+ V +LP+R LCK+ GA + +EM A + +SP L+ + E E
Sbjct: 15 IEIEHPFLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWER 74
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
Q+ G+ P ++ ++E M D +D+N+GCP+ I G GS L++
Sbjct: 75 PIAAQIFGSEPELMADMAVRVQE-MGFDLIDINMGCPVPKIVNNGDGSALMK-------- 125
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+P + K + + +++
Sbjct: 126 ----DPVLAGKIIKAMADRL---------------------------------------- 141
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEK 493
S+P+TVK R G D ++ M K + GA+ + +HGRTREQ Y+ +ADWD I +
Sbjct: 142 ---SVPVTVKIRKGF-DDEHVNAVEMAKIAEQSGAAAVAVHGRTREQYYSGKADWDIIRQ 197
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 198 VKEAVS--------------------------------------------------IPVI 207
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI S D E++ + G MI RGA PWIF+E+
Sbjct: 208 GNGDINSPLD-AEAMLRETGCDGFMIARGAKGNPWIFKEL 246
>gi|291534721|emb|CBL07833.1| tRNA-U20-dihydrouridine synthase [Roseburia intestinalis M50/1]
Length = 330
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 107/348 (30%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
+I+ + + + L L+P+ V +LPFR LCK+ GA + C EM A +L
Sbjct: 3 EIRRLQIGNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIL-------- 54
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
K +E+L +
Sbjct: 55 -YKNRNTEELLTID---------------------------------------------- 67
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+R N +QL G++P ++++ + +E++ D +D+N+GCP+ + G GS L++ +
Sbjct: 68 KRENPVSLQLFGSDPDIMSEIAKQIEDR-PFDILDINMGCPVPKVVNNGDGSALMKNPKL 126
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
+I P+TVK R G +++ ++ GA+ + +HGRTR Q Y+ +
Sbjct: 127 AGEIIEKTARAIKKPVTVKIRKGFDEEHVNAVEMAHIAQESGAAAVAVHGRTRSQFYSGK 186
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADWD I + + S
Sbjct: 187 ADWDIIRQVKEAVS---------------------------------------------- 200
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDIL+ D +++K G MI RGA PWIF +I
Sbjct: 201 ----IPVIGNGDILTAADVI-AMQKQTGCDGFMIARGAEGNPWIFAQI 243
>gi|399023913|ref|ZP_10725962.1| putative TIM-barrel protein, nifR3 family [Chryseobacterium sp.
CF314]
gi|398081641|gb|EJL72414.1| putative TIM-barrel protein, nifR3 family [Chryseobacterium sp.
CF314]
Length = 331
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 89/351 (25%), Positives = 145/351 (41%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N E + L L+P+ V + PFRRLCK GAD+ SE + L++ +
Sbjct: 1 MIKIGNIELPEF----PLLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA--- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
IK + D+F + P+
Sbjct: 54 ---IKSRKKLDIFDYER------------------------------PV----------- 69
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + +++E + D VD+N GCP++ + +G+G+G+L+
Sbjct: 70 --------GIQIFGGDEEAMAMSARIVE-TVNPDLVDINFGCPVKKVVCKGAGAGVLKDI 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + LP+TVKTR G ++ I + ++ G +T+H RTR Q Y
Sbjct: 121 DLMVRLTKAVVSSTHLPVTVKTRLGWDSNSINIDEVAERLQETGIKALTIHARTRGQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW++I + Q + NI
Sbjct: 181 GEADWEHISRIKQ----NPNI--------------------------------------- 197
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E E K+ + G+MIGR A+ PWIF EIK
Sbjct: 198 -----EIPIFGNGDIDSPEKALE-YKQKYACDGIMIGRAAIGYPWIFNEIK 242
>gi|365876402|ref|ZP_09415924.1| tRNA-u20-dihydrouridine synthase [Elizabethkingia anophelis Ag1]
gi|442589709|ref|ZP_21008516.1| tRNA-dihydrouridine synthase [Elizabethkingia anophelis R26]
gi|365756014|gb|EHM97931.1| tRNA-u20-dihydrouridine synthase [Elizabethkingia anophelis Ag1]
gi|442560597|gb|ELR77825.1| tRNA-dihydrouridine synthase [Elizabethkingia anophelis R26]
Length = 329
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 139/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA------IKSRKKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 68 ------------------------------PV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMAMSARIVE-TVEPDLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + ++ G +T+H RTR Q Y +ADW++I + +
Sbjct: 138 VTVKTRLGWDTESINIDEVAERLQETGIKALTIHARTRAQMYKGEADWNHISRI-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N+ I P++GNGDI S
Sbjct: 193 NNSNIE-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E K+ G+MIGRGA+ PWIF EIK
Sbjct: 210 PEKALE-YKQKYDCDGIMIGRGAIGYPWIFNEIK 242
>gi|240143461|ref|ZP_04742062.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
gi|257204494|gb|EEV02779.1| tRNA-dihydrouridine synthase [Roseburia intestinalis L1-82]
Length = 330
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 135/348 (38%), Gaps = 107/348 (30%)
Query: 246 KIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWA 305
+I+ + + + L L+P+ V +LPFR LCK+ GA + C EM A +L
Sbjct: 3 EIRRLQIGNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIL-------- 54
Query: 306 LIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
K +E+L +
Sbjct: 55 -YKNRNTEELLTID---------------------------------------------- 67
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+R N +QL G++P ++++ + +E++ D +D+N+GCP+ + G GS L++ +
Sbjct: 68 KRENPVSLQLFGSDPDIMSEIAKQIEDR-PFDILDINMGCPVPKVVNNGDGSALMKNPKL 126
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
+I P+TVK R G +++ ++ GA+ + +HGRTR Q Y+ +
Sbjct: 127 AGEIIEKTARAIKKPVTVKIRKGFDEEHVNAVEMAHIAQESGAAAVAVHGRTRSQFYSGK 186
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADWD I + + S
Sbjct: 187 ADWDIIRQVKEAVS---------------------------------------------- 200
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDIL+ D +++K G MI RGA PWIF +I
Sbjct: 201 ----IPVIGNGDILTAADVI-AMQKQTGCDGFMIARGAEGNPWIFAQI 243
>gi|354615295|ref|ZP_09033082.1| TIM-barrel protein, nifR3 family [Saccharomonospora paurometabolica
YIM 90007]
gi|353220348|gb|EHB84799.1| TIM-barrel protein, nifR3 family [Saccharomonospora paurometabolica
YIM 90007]
Length = 384
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 133/334 (39%), Gaps = 102/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N+ FRRLC+++GA + EM A +++ P W ++ E E +QL
Sbjct: 26 VVLAPMAGITNVAFRRLCREYGAGLYVCEMITARAVVERHPGTWHMMTFDEGEYPRSMQL 85
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + + +++ + D +D N GCP+ + ++G G+ L + LFG
Sbjct: 86 YGVDPATMREAVKIIVGEGLADHIDANFGCPVAKVTRKGGGAALPFKRKLFG-------- 137
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
D V RA++ + E + +P
Sbjct: 138 ----------------DIV----------------------RASVEAA------EPAGVP 153
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
TVK R GI D++ + GA+ + LH RT QRY+ QADW +I + + +
Sbjct: 154 FTVKFRVGIDDDHHTYVDAGRIAEAEGAASVALHARTAAQRYSGQADWSHIARLKEAVTT 213
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI +
Sbjct: 214 -------------------------------------------------VPVLGNGDIFT 224
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D + ++ G+++GRG L +PW+F E++
Sbjct: 225 ADDALRMVAET-GCDGIVVGRGCLGRPWLFGELE 257
>gi|239917156|ref|YP_002956714.1| TIM-barrel protein, nifR3 family [Micrococcus luteus NCTC 2665]
gi|281414375|ref|ZP_06246117.1| putative TIM-barrel protein, nifR3 family [Micrococcus luteus NCTC
2665]
gi|239838363|gb|ACS30160.1| putative TIM-barrel protein, nifR3 family [Micrococcus luteus NCTC
2665]
Length = 436
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 139/357 (38%), Gaps = 102/357 (28%)
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
P TD + + + + L+P+ + N FRRLC+++G + +EM A L+
Sbjct: 48 PAPTTDRLTLPPLRLGPLTIDVPVVLAPMAGITNTAFRRLCREYGGGLYVNEMVTARALV 107
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
+ P+ +I+ E VQL +P ++L E+ D +D+N GCP+ + +
Sbjct: 108 ERKPESMRIIQHDPDEVPRSVQLYSVDPVTTGAAVRMLVEEDRCDHIDMNFGCPVPKVTR 167
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
+G GS L ++ LF
Sbjct: 168 RGGGSALPWKSELF---------------------------------------------- 181
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
A+I+++ +T + +P+TVK R GI +D+ + RD G + + LHGRT
Sbjct: 182 -----ASIVKAAVTEAAK-KDIPVTVKMRRGIDEDHLTFLDAGRTARDLGVAAVALHGRT 235
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
Q Y+ A WD I + + +P
Sbjct: 236 TRQFYSGTAVWDDIAR-----------LREALPDI------------------------- 259
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ + GV+IGRG +PW+F +++
Sbjct: 260 -------------PVLGNGDIWSAEDAIAMVERT-GVDGVVIGRGCQGRPWLFGDLQ 302
>gi|289705787|ref|ZP_06502170.1| TIM-barrel protein, nifR3 family [Micrococcus luteus SK58]
gi|289557503|gb|EFD50811.1| TIM-barrel protein, nifR3 family [Micrococcus luteus SK58]
Length = 436
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 139/357 (38%), Gaps = 102/357 (28%)
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL 297
P TD + + + + L+P+ + N FRRLC+++G + +EM A L+
Sbjct: 48 PAPTTDRLALPPLRLGPLTIDVPVVLAPMAGITNTAFRRLCREYGGGLYVNEMVTARALV 107
Query: 298 KSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
+ P+ +I+ E VQL +P ++L E+ D +D+N GCP+ + +
Sbjct: 108 ERKPESMRIIQHDPDEVPRSVQLYSVDPVTTGAAVRMLVEEDRCDHIDMNFGCPVPKVTR 167
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
+G GS L ++ LF
Sbjct: 168 RGGGSALPWKSELF---------------------------------------------- 181
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
A+I+++ +T + +P+TVK R GI +D+ + RD G + + LHGRT
Sbjct: 182 -----ASIVKAAVTEAAK-RDIPVTVKMRRGIDEDHLTFLDAGRTARDLGVAAVALHGRT 235
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
Q Y+ A WD I + + +P
Sbjct: 236 TRQFYSGTAVWDDIAR-----------LREALPDI------------------------- 259
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ + GV+IGRG +PW+F +++
Sbjct: 260 -------------PVLGNGDIWSAEDAIAMVEQT-GVDGVVIGRGCQGRPWLFGDLQ 302
>gi|304383997|ref|ZP_07366453.1| tRNA-dihydrouridine synthase B [Prevotella marshii DSM 16973]
gi|304334889|gb|EFM01163.1| tRNA-dihydrouridine synthase B [Prevotella marshii DSM 16973]
Length = 326
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V ++ FR LCK++GA + +E A AL++ S
Sbjct: 13 LLLAPMEDVTDIGFRLLCKRYGASMVYTEFVSAE----------ALVRSIRS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G +
Sbjct: 55 ------TMSKLTICDEER------------PV-------------------GIQIYGRDK 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E D +D+N GCP++ + +G+G+G+L+ ++ + + + + P
Sbjct: 78 DAMVEAARIVERAKP-DVIDLNFGCPVKKVAGKGAGAGMLRNVPLMLEITREVVKAVNTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW +I K +
Sbjct: 137 VTVKTRLGWDAENIIIEDLAEQLQDCGIQALTIHGRTRSQMYTGEADWSWIGKV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI S
Sbjct: 192 ANPRLH-------------------------------------------IPVIGNGDIAS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E+ ++ + VMIGR +PWIF+EI +
Sbjct: 209 PEQAKEAFEQY-GVDAVMIGRATFGRPWIFKEIND 242
>gi|399030237|ref|ZP_10730743.1| putative TIM-barrel protein, nifR3 family [Flavobacterium sp.
CF136]
gi|398071743|gb|EJL62990.1| putative TIM-barrel protein, nifR3 family [Flavobacterium sp.
CF136]
Length = 330
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 145/352 (41%), Gaps = 109/352 (30%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFRRLCK GAD+ SE + L++ +
Sbjct: 1 MVKIGNIELPEF----PLLLAPMEDVSDPPFRRLCKTHGADLMYSEFISSEGLIRDA--- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ +M +D D P+
Sbjct: 54 -------------------------------IKSRMKLDIFDYER--PV----------- 69
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + ++++ + D VD+N GCP++ + +G+G+G+L+
Sbjct: 70 --------GIQIFGGDEEAMALSSKIVS-TVKPDLVDINFGCPVKKVVCKGAGAGVLKDV 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + LP+TVKTR G ++ I + +D G +T+H RTR Q Y
Sbjct: 121 DLMVRLTKAVIRSTDLPVTVKTRLGWDDNSINIDEVAERLQDIGVQALTIHARTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
ADW +I + NN P+ IT+
Sbjct: 181 GHADWSHIARVK------NN------PR--------ITM--------------------- 199
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P++GNGDI S E + K I G+MIGR A+ PWIF EIK
Sbjct: 200 -------PIFGNGDIDSPEKALK-YKNEYGIDGIMIGRAAIGYPWIFNEIKH 243
>gi|256419707|ref|YP_003120360.1| hypothetical protein Cpin_0661 [Chitinophaga pinensis DSM 2588]
gi|256034615|gb|ACU58159.1| TIM-barrel protein, nifR3 family [Chitinophaga pinensis DSM 2588]
Length = 354
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++ + IK D+F +
Sbjct: 14 LLLAPMEDVSDPPFRAVCKEKGADLMYTEFISSEGLIRDA------IKSRRKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+Q+ G +
Sbjct: 67 ------------------------------------------------RPVGIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ Q++E D +D+N GCP++ + +G+GSG+L+ + + + + + LP
Sbjct: 79 EPMAMAAQIVEATNP-DLLDINYGCPVKKVVCKGAGSGILKDIPKMVKLTAAVVKATKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D I + +D G +T+HGRTR Q Y ADW I K +
Sbjct: 138 VTVKTRLGWDDDTKNIEEVAERLQDVGIQALTIHGRTRTQMYKGHADWTLIGKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI +
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDICT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E + +K + GVMIGR A+ PWIF EIK
Sbjct: 210 PEQAIAAREKY-GVDGVMIGRAAIGYPWIFNEIKH 243
>gi|366163380|ref|ZP_09463135.1| nifR3 family TIM-barrel protein [Acetivibrio cellulolyticus CD2]
Length = 325
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/347 (25%), Positives = 143/347 (41%), Gaps = 112/347 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++PFR LCK+ G + + TE++ + + D+ +L
Sbjct: 12 IFLAPMAGVTDMPFRILCKEQGCGL------LYTEMISAKGIYY--------NDVKSFKL 57
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+P LEE A+ Q+ G+ P
Sbjct: 58 TEIDP---------LEEPTAI--------------------------------QIFGSEP 76
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ K + L Q+ +D+N+GCP I K G GS L++ +++ +I+ ++ SS P
Sbjct: 77 DIMAKVAERLS-QLNTAIIDINMGCPTPKITKNGEGSALMRNPLLVRKIISEVSRASSKP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G +++ D GA+ I +HGRTREQ Y+ +ADWD I+K + S
Sbjct: 136 VTVKIRKGWDENSVNAVEIAKIAEDSGAAAIAVHGRTREQFYSGKADWDIIKKVKEAVS- 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI +
Sbjct: 195 -------------------------------------------------IPVIGNGDIFT 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE-----KKLFDIY 602
ED + L+++ +M+GRGA PWIF+ I E KL DIY
Sbjct: 206 EEDARKMLEET-GCDAIMVGRGAQGNPWIFKNILEYLKFNPKLSDIY 251
>gi|393782659|ref|ZP_10370842.1| hypothetical protein HMPREF1071_01710 [Bacteroides salyersiae
CL02T12C01]
gi|392672886|gb|EIY66352.1| hypothetical protein HMPREF1071_01710 [Bacteroides salyersiae
CL02T12C01]
Length = 326
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEARP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E L + + +MIGRG++ +PWIF+E+K
Sbjct: 209 AIRAKECLDRY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|308176716|ref|YP_003916122.1| tRNA-dihydrouridine synthase [Arthrobacter arilaitensis Re117]
gi|307744179|emb|CBT75151.1| putative tRNA-dihydrouridine synthase [Arthrobacter arilaitensis
Re117]
Length = 394
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 144/357 (40%), Gaps = 108/357 (30%)
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
+T +K+ + K+ + L+P+ V N FRRLC+++G + +EM A
Sbjct: 10 NTPTLKLPPLQLGKLTIDTPVVLAPMAGVTNRAFRRLCREYGGGLYVTEMVTAR------ 63
Query: 301 PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS 360
AL++R NP L + +E+
Sbjct: 64 ----ALVER--------------NPESLRIISHDPDEE---------------------- 83
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
+ +Q+ G +P + +++ ++ + D VD+N GCP+ + ++G GS L
Sbjct: 84 ---------IRSIQIYGVDPGTVRAAVRMVVDENLADHVDLNFGCPVPKVTRKGGGSALP 134
Query: 421 QRANILQSVITCMNEVSS---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
++++ S+I ++ +P+TVK R GI KD+ RD GA+ +TLH RT
Sbjct: 135 WKSDLYTSIIEAATSEAAKGDIPLTVKMRIGIDKDHLTYLESAKIARDHGAAAVTLHART 194
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
Q Y +DWD I + + MP
Sbjct: 195 AGQYYAGHSDWDAITTLREAM--------DDMP--------------------------- 219
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGDI S ED E ++++ +GVM+GRG +PWIF +++
Sbjct: 220 --------------VLGNGDIFSAEDAIEMVEQT-GAAGVMVGRGCQGRPWIFGDLQ 261
>gi|282879049|ref|ZP_06287809.1| TIM-barrel protein, nifR3 family [Prevotella buccalis ATCC 35310]
gi|281298783|gb|EFA91192.1| TIM-barrel protein, nifR3 family [Prevotella buccalis ATCC 35310]
Length = 329
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 141/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++ FR+LCK++G + +E A L++S + ++E G+Q+
Sbjct: 13 ILLAPMEDVTDIGFRQLCKRFGVSMVYTEFVSAEALVRSIQASLNKLTISDAERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+L+ N P
Sbjct: 73 YGRDVESMVEAAKIV-EQAHPDVIDINFGCPVKKVAGKGAGAGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ ++ P
Sbjct: 121 LLL----------------------------------------EITREVVKAVHT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++N II + +D G +T+HGRTR Q YT ADW I + +
Sbjct: 137 VTVKTRLGWDENNLIITELAEQLQDCGIQALTIHGRTRSQMYTGNADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
++ ++ ++ + +M+GR A +PWIF+E+++
Sbjct: 209 PQEAKQAFERF-GVDAIMVGRAAFGQPWIFKEMRD 242
>gi|302382892|ref|YP_003818715.1| hypothetical protein Bresu_1781 [Brevundimonas subvibrioides ATCC
15264]
gi|302193520|gb|ADL01092.1| TIM-barrel protein, nifR3 family [Brevundimonas subvibrioides ATCC
15264]
Length = 352
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 134/343 (39%), Gaps = 110/343 (32%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ ++P+T + +LPFR+L + GA +EM + EL + P +++R D
Sbjct: 14 GRVLMAPMTGITDLPFRQLACRLGAAYVATEMVASAELARGRPD---VMRRAAVGD---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
G P+ I QL G
Sbjct: 67 ------------------------------GLPLTVI------------------QLVGR 78
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+P + + ++ E D VD+N GCP + + SGS L++ ++ ++ + +S
Sbjct: 79 DPAAMAQGARMAEAAGA-DIVDLNFGCPAKEVTGSASGSALMRTPDLAGRIMAAVVAATS 137
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK-CAQL 497
P+TVK R G WD + A+L
Sbjct: 138 RPVTVKMRLG---------------------------------------WDDASRNAAEL 158
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+R D G +T+HGRTR+Q YT ADWD I + P+ NGD
Sbjct: 159 AARAE-----------DLGVKAVTVHGRTRQQFYTGHADWDAIAAV-KTAVGIPVIVNGD 206
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
I++ + E+L+KS +M+GRG +PW+ + E+ L D
Sbjct: 207 IITADQAREALQKS-GADALMLGRGVYGRPWLAAHL-ERALRD 247
>gi|237721929|ref|ZP_04552410.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229448798|gb|EEO54589.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 331
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ +E + L+++ + + ++E +Q+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADMAYTEFVSSDALIRAVSKTAQKLSISDAERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAAKIV-EQAQPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + + VMIGR + +PWIF+E+K
Sbjct: 209 PERCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|408490597|ref|YP_006866966.1| tRNA dihydrouridine synthase Dus [Psychroflexus torquis ATCC
700755]
gi|408467872|gb|AFU68216.1| tRNA dihydrouridine synthase Dus [Psychroflexus torquis ATCC
700755]
Length = 330
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 137/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK++GAD+ +E + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRALCKEYGADMVYTEFVSSEGLIRDA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K Q L+ + +R G+Q+ G N
Sbjct: 54 --------AKSMQKLD---------------------------IYERERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ + M + + LP
Sbjct: 79 DSMLRSVEIVEKTKP-DVIDINFGCPVKKVVSKGAGAGILKDIDLMVKLTGEMVKHTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I+ + +D G I++HGRTR Q Y +ADW I + +
Sbjct: 138 ITVKTRLGWDHDSIKIYEVAERLQDVGCKAISIHGRTRAQMYKGEADWKPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVNS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E ++ + G MIGR ++ PW F+ +K
Sbjct: 210 PEK-AALMRDEYGLDGAMIGRSSIGSPWFFKAVKH 243
>gi|329962719|ref|ZP_08300642.1| putative tRNA-dihydrouridine synthase B [Bacteroides fluxus YIT
12057]
gi|328529553|gb|EGF56456.1| putative tRNA-dihydrouridine synthase B [Bacteroides fluxus YIT
12057]
Length = 325
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 137/333 (41%), Gaps = 105/333 (31%)
Query: 262 YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLC 321
+L+P+ V + FR +CK++GAD+ +E A L++S + + ++E +Q+
Sbjct: 14 FLAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVGKTRQKLNISDAERPVTIQIY 73
Query: 322 GNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 74 GRDTETMVEAARIV-EQARPDILDINFGCPVKRVAGKGAGAGMLQ-----------NVPL 121
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI 441
+L + VVD V + P+
Sbjct: 122 MLEIT------RAVVDAVKI--------------------------------------PV 137
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 138 TVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEVKK----- 192
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
P+ R P+ GNGDI +
Sbjct: 193 -------NPRMR------------------------------------IPIIGNGDITTP 209
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PWIF+E+K
Sbjct: 210 QRAKECFDLY-GVDAIMIGRASFGRPWIFKEVK 241
>gi|374596066|ref|ZP_09669070.1| tRNA-U20-dihydrouridine synthase [Gillisia limnaea DSM 15749]
gi|373870705|gb|EHQ02703.1| tRNA-U20-dihydrouridine synthase [Gillisia limnaea DSM 15749]
Length = 330
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ +M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSRMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+ M + ++LP
Sbjct: 79 ESMLQSVEIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTAAMVKHTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
IT+KTR G +D+ I + +D GA I +HGRTR Q Y ADW I +
Sbjct: 138 ITIKTRLGWDQDSIRIVEVAERLQDAGAKSIAIHGRTRAQMYKGVADWGPIADV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 NNPRMH-------------------------------------------IPIFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PEKAME-MRDKYGLDGAMIGRASIGYPWFFREVK 242
>gi|225375159|ref|ZP_03752380.1| hypothetical protein ROSEINA2194_00783 [Roseburia inulinivorans DSM
16841]
gi|225213033|gb|EEG95387.1| hypothetical protein ROSEINA2194_00783 [Roseburia inulinivorans DSM
16841]
Length = 327
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 83/347 (23%), Positives = 133/347 (38%), Gaps = 107/347 (30%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
I+ + + + L L+P+ V +LPFR LCK+ GA + C EM A + L
Sbjct: 4 IRKLQIGNVTLENNLILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAI---------L 54
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
K +E+L +
Sbjct: 55 YKNKNTEELLTID----------------------------------------------P 68
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
R +QL G++P ++++ + +EE+ D +D+N+GCP+ + G GS L++ +
Sbjct: 69 REKPVSLQLFGSDPDIMSEIAKQIEER-PFDILDINMGCPVPKVVNNGDGSALMKNPLLA 127
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
+I + P+TVK R G D+ + GA+ I +HGRTREQ Y+ +A
Sbjct: 128 GKIIEKTAKAIKKPVTVKIRKGFDDDHINAVEMAHIAEESGAAAIAVHGRTREQFYSGKA 187
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DWD I + + S
Sbjct: 188 DWDIIRQVKEAVS----------------------------------------------- 200
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDIL+ +D ++ + G MI RGA PWIF++I
Sbjct: 201 ---IPVIGNGDILTADDVIR-MQDETNCDGFMIARGAEGNPWIFKQI 243
>gi|332881487|ref|ZP_08449136.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357045562|ref|ZP_09107197.1| TIM-barrel protein, nifR3 family [Paraprevotella clara YIT 11840]
gi|332680485|gb|EGJ53433.1| TIM-barrel protein, nifR3 family [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355531424|gb|EHH00822.1| TIM-barrel protein, nifR3 family [Paraprevotella clara YIT 11840]
Length = 341
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 134/335 (40%), Gaps = 104/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR LCK++GA + SE A L++ + + + E +Q+
Sbjct: 13 VFLAPMEDVTDIGFRLLCKRFGAAMVYSEFVAADALVRMVNRSLEKLAVCDDERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P + +++ E+ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKEPGPVADAARIVVERARPDMLDLNFGCPVKRVAGKGAGAGMLQ-----------NIP 121
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD VD+ P
Sbjct: 122 KMLEIT------RAVVDAVDI--------------------------------------P 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + +I + + +D G +T+HGRTR Q YT +ADW I +
Sbjct: 138 VTVKTRLGWDESSKVIVDLAERLQDCGIRALTIHGRTRAQMYTGEADWTLIGEV------ 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN R T P+ GNGDI S
Sbjct: 192 KNN-------------------------PRMT-----------------IPIIGNGDITS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E + VM+GR +PWIF+EI +
Sbjct: 210 PERARECF-DCYGVDAVMVGRATFGRPWIFKEIMD 243
>gi|443293441|ref|ZP_21032535.1| tRNA-dihydrouridine synthase [Micromonospora lupini str. Lupac 08]
gi|385883299|emb|CCH20686.1| tRNA-dihydrouridine synthase [Micromonospora lupini str. Lupac 08]
Length = 410
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 126/334 (37%), Gaps = 103/334 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N+ FRRLC++ G I EM L++ +P+ +I + E +QL
Sbjct: 43 VVLAPMAGITNVGFRRLCREQGGGIYVCEMITTRALVERNPKTLRMIAFGDDEQPRSLQL 102
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P V +++ E+ D +D+N GCP+ + ++G G+ L R LF
Sbjct: 103 YGTDPEVTAAAVRIVVERDLADHIDLNFGCPVPKVTRRGGGAALPWRRRLF--------- 153
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
A ++++ + S +P
Sbjct: 154 ------------------------------------------ARLVRAAVDAAAP-SGVP 170
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI D+ +D G + + LHGRT QRY+ ADWD I Q
Sbjct: 171 VTVKMRKGIDDDHLTYVEAGLAAQDAGVAAVALHGRTASQRYSGTADWDAIATLKQALD- 229
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI
Sbjct: 230 -------------------------------------------------VPVLGNGDIWE 240
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D + + + GV+IGRG L +PW+F +++
Sbjct: 241 ADDALRMVAHT-GVDGVVIGRGCLGRPWLFADLE 273
>gi|260591922|ref|ZP_05857380.1| tRNA-dihydrouridine synthase [Prevotella veroralis F0319]
gi|260536206|gb|EEX18823.1| tRNA-dihydrouridine synthase [Prevotella veroralis F0319]
Length = 318
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 140/340 (41%), Gaps = 105/340 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S + + +SE G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRYGAAMVYTEFVSADAIIRSIKSTLSKMVIDDSERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGRDVASMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N +P
Sbjct: 121 LLL----------------------------------------EITREVVKAVN----VP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G +T+HGRTR Q YT QADW I + +
Sbjct: 137 VTVKTRLGWDTEHLIITDLAEQLQDCGIQALTIHGRTRSQMYTGQADWTLIGEVTK---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ + P+ GNGD+ +
Sbjct: 193 --------NPRIK------------------------------------IPIIGNGDVTN 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ +E + + VMIGR PWIF E+ D
Sbjct: 209 RLEASEKF-DTYGVDAVMIGRATFGCPWIFSPRAEEISLD 247
>gi|238917594|ref|YP_002931111.1| hypothetical protein EUBELI_01673 [Eubacterium eligens ATCC 27750]
gi|238872954|gb|ACR72664.1| Hypothetical protein EUBELI_01673 [Eubacterium eligens ATCC 27750]
Length = 321
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 132/341 (38%), Gaps = 107/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + + L+P+ V +LPFR LCK+ G + C+EM A +L ++ +ED
Sbjct: 6 VEIKNNIALAPMAGVTDLPFRLLCKEQGCGLMCTEMVSAKAVLYNN---------KNTED 56
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L + G P L Q
Sbjct: 57 LMKT-VPGERPLAL---------------------------------------------Q 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++ + L E+ D +DVN+GCP+ + G GS L++ ++ ++ M
Sbjct: 71 LFGSDPDIMADIAKRLSEREF-DIIDVNMGCPVPKVVNNGEGSALMKDPVLVGRIVEKMA 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+T+K R G +++ + G + + +H RTR+Q Y+ ADWD I +
Sbjct: 130 DALDKPLTIKIRAGFDENSINAPEIAHVIEESGGAAVAVHARTRQQYYSGHADWDIIRQV 189
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 190 KEAVS--------------------------------------------------IPVIG 199
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI S ED +K++ G+MIGR A PWIF+++ E
Sbjct: 200 NGDIKSGEDAVNMMKQT-GCDGIMIGRAARGNPWIFRQVSE 239
>gi|168335421|ref|ZP_02693512.1| predicted TIM-barrel enzyme, possibly dehydrogenase, nifR3 family
protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 315
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 107/241 (44%), Gaps = 57/241 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ LLQ A+ QL G++P +L+ Q + E V DF+D+N+GCP I
Sbjct: 47 LLYENDKTCVLLQVADTEHPVAAQLFGSDPSILSAMAQQVSESSV-DFIDLNMGCPAPKI 105
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
K G GS LL ++ ++++ + + S P+TVK R G + N I GAS
Sbjct: 106 TKNGEGSALLANPKLVYTIVSAVAKASPKPVTVKIRKGYTEVNAI--EVAQAIEAAGASA 163
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
ITLHGRTR+Q Y+ ADWD I+K
Sbjct: 164 ITLHGRTRDQFYSGVADWDIIKKVK----------------------------------- 188
Query: 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+++ P L GNGDI S ED L + + +MIGR AL PWIF
Sbjct: 189 -------------SKIAIP--LIGNGDIKSPEDAKAMLDYT-NCDAIMIGRAALGNPWIF 232
Query: 591 Q 591
Q
Sbjct: 233 Q 233
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P+ +LP+R +CK++GA + +EM A LL + + L++ ++E
Sbjct: 6 IEIPNNIALAPMAGFTDLPYRNICKEFGAGLVYTEMVSAKALLYENDKTCVLLQVADTEH 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
QL G++P +L+ Q + E +VDF+D+N+GCP I K G GS LL L
Sbjct: 66 PVAAQLFGSDPSILSAMAQQVSES-SVDFIDLNMGCPAPKITKNGEGSALLANPKL 120
>gi|258655080|ref|YP_003204236.1| hypothetical protein Namu_4974 [Nakamurella multipartita DSM 44233]
gi|258558305|gb|ACV81247.1| TIM-barrel protein, nifR3 family [Nakamurella multipartita DSM
44233]
Length = 398
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 131/340 (38%), Gaps = 104/340 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V N PFR LC+++GA + EM L+ P+ A+++ E VQL
Sbjct: 39 VVLAPMAGVTNAPFRSLCREFGAGLYVCEMITTRALVAGDPKSRAMMRFEPDEHPRSVQL 98
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P V+ + +L+ EQ D +D+N GCP+ + ++G GS + + LF
Sbjct: 99 YGVDPVVVGQAVRLVVEQDLADHIDLNFGCPVPKVTRKGGGSAIPYKRRLF--------- 149
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
E +V VD Q + G +P
Sbjct: 150 -----------ESIVRSAVD------------QATPHG--------------------VP 166
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI D+ + D G + + LH RT Q Y+ QADW+ I
Sbjct: 167 VTVKMRIGIDSDHITYLDAGRIAEDAGVAAVALHARTAIQHYSGQADWETI--------- 217
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
GR + Q + P+ GNGDI +
Sbjct: 218 -----------------------GRLK-----------------QAVTSVPVLGNGDIFA 237
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
D + + GV++GRG +PW+F E+ FD
Sbjct: 238 ASDALTMMAMT-GCDGVVVGRGCQGRPWLFAELAAA--FD 274
>gi|251780604|ref|ZP_04823524.1| tRNA-dihydrouridine synthase B [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243084919|gb|EES50809.1| tRNA-dihydrouridine synthase B [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 321
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 131/342 (38%), Gaps = 107/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ + ++L+P+ V +L FR LCK+ G + C+EM A L S L++ + E
Sbjct: 6 LSFDNNVFLAPMAGVTDLSFRGLCKEMGCGLVCTEMVSAKALYYGSENTQTLLRVSDKEA 65
Query: 315 LFGVQLCGNNPYVLTK-CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
VQ+ G P ++ + C + L + V +D+N+GCP I K GS L
Sbjct: 66 PVAVQIFGREPEIMAEICEKYLNPREDVCIIDINMGCPAPKIVKNKEGSAL--------- 116
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+LE + D V +
Sbjct: 117 ---------------MLEPDLAYDIV-------------------------------KAI 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS P+TVK R G ++ F + GA I +HGRTR+Q Y +DW+ I+K
Sbjct: 131 KKVSKKPVTVKFRKGYDDEHINAVEFGKALEEAGADAIAVHGRTRKQMYEGHSDWEIIKK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 191 VKEAVS--------------------------------------------------IPVL 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S ED + +K+ + G++I RG++ PWIF++I++
Sbjct: 201 GNGDVFSPEDAIK-MKELTNCDGILIARGSMGNPWIFKQIQD 241
>gi|150026283|ref|YP_001297109.1| tRNA-dihydrouridine synthase [Flavobacterium psychrophilum
JIP02/86]
gi|149772824|emb|CAL44308.1| Probable tRNA-dihydrouridine synthase [Flavobacterium psychrophilum
JIP02/86]
Length = 330
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKLHGADLMYSEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++++ + D VD+N GCP++ + +G+G+G+L+ +++ + + ++LP
Sbjct: 79 EAMAMSAKIVD-AVHPDLVDINYGCPVKKVVCKGAGAGVLKDVDLMVRLTKAVIRSTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + +D G +T+H RTR Q Y +DW +IE+
Sbjct: 138 VTVKTRLGWDDNSINIDEVAERLQDIGVQALTVHARTRAQMYKGHSDWTHIERVK----- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ IT+ P++GNGDI S
Sbjct: 193 -NN------PR--------ITM----------------------------PIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E K + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALE-YKNKFGLDGMMIGRAAIGYPWIFNEIKH 243
>gi|148272765|ref|YP_001222326.1| putative tRNA-dihydrouridine synthase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147830695|emb|CAN01635.1| putative tRNA-dihydrouridine synthase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 410
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++GA + SEM + L++ +P+ LI H SE + +QL
Sbjct: 40 VVLAPMAGITNTAFRRLCREFGAGLYVSEMITSRALVERTPESMRLITHHPSEKVRSIQL 99
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + + +L + D +D+N GCP+ + ++G G+ L + LF
Sbjct: 100 YGVDPKTVREAVTMLVAEDRADHIDLNFGCPVAKVTRKGGGAALPWKLGLF--------- 150
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I++ + ++ P
Sbjct: 151 ------------------------------------------TDIVEGAVKAAGDI---P 165
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI D+ G + I LH RT Y+ ADW I K
Sbjct: 166 LTVKMRKGIDADHLTYLEAGRAAEGAGVASIALHARTAADYYSGHADWSAIAKL------ 219
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
KQA IE P+ GNGDI +
Sbjct: 220 --------------------------------KQA----IESV-------PVLGNGDIWA 236
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ED + ++ GV++GRG L +PW+F ++
Sbjct: 237 AEDAIRMMDET-GADGVVVGRGCLGRPWLFGDL 268
>gi|423281400|ref|ZP_17260311.1| hypothetical protein HMPREF1203_04528 [Bacteroides fragilis HMW
610]
gi|404583104|gb|EKA87787.1| hypothetical protein HMPREF1203_04528 [Bacteroides fragilis HMW
610]
Length = 325
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + +MIGRG++ +PWIF+E+K
Sbjct: 209 ATGAKECFERY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|340351738|ref|ZP_08674641.1| nitrogen regulation protein Nifr3 [Prevotella pallens ATCC 700821]
gi|339616952|gb|EGQ21587.1| nitrogen regulation protein Nifr3 [Prevotella pallens ATCC 700821]
Length = 323
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A +++S I E E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSADAIIRSIKSTLNKIVIDEDERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ E++ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGKDVDSMVEAAKIV-ERVNPDVIDINFGCPVKKVANKGAGSGMLR-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ ++ P
Sbjct: 121 LLL----------------------------------------EITREVVKAVHT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDDNNLVITELAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D E + + +MIGR PW+F E E
Sbjct: 209 VSDAQERFNRY-GVDAIMIGRATFGCPWLFSETAE 242
>gi|383124673|ref|ZP_09945336.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 1_1_6]
gi|251841170|gb|EES69251.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 1_1_6]
Length = 330
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------SISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAIVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW IE+ +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIEEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNQRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|58584719|ref|YP_198292.1| tRNA-dihydrouridine synthase [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419035|gb|AAW71050.1| tRNA-dihydrouridine synthase [Wolbachia endosymbiont strain TRS of
Brugia malayi]
Length = 310
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 132/332 (39%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + ++L VQL
Sbjct: 6 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---MQKAKVDELTAVQL 62
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P ++ + + L E M +D+N GCP++ + +GS L++
Sbjct: 63 AGCEPDIMAEAAK-LNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEK----------- 110
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E +V+ +N +P
Sbjct: 111 ----KAAEIIE------------------------------------AVVKAVN----VP 126
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW +I
Sbjct: 127 VTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFIRNV------ 180
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI S
Sbjct: 181 --------------------------KEQ------------------VKIPVIVNGDIKS 196
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D +LK+S + GVMIGRGA +PW+ +
Sbjct: 197 LNDIQNALKESRA-DGVMIGRGAYGRPWLINQ 227
>gi|325662824|ref|ZP_08151393.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470876|gb|EGC74105.1| hypothetical protein HMPREF0490_02133 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 325
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 136/343 (39%), Gaps = 111/343 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LCK+ GA + C EM A + K ++D
Sbjct: 12 VELENPYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQ---------YKNKNTQD 62
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L + EE+ V Q
Sbjct: 63 LLRIH----------------EEERPVSL------------------------------Q 76
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G+ P +++ + +EE + +D+N+GCP+ I K G GS L+++ ++ +++
Sbjct: 77 LFGSEPDTISEIAKQIEE-LPFAILDINMGCPVPKIVKNGEGSALMKQPKLVYEIVSKTV 135
Query: 435 EVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ P+TVK R G D++ I+ + G + + +HGRTREQ Y+ +ADW+ I
Sbjct: 136 KAIQKPVTVKIRKGF--DDSCINAVEIAKVIEEAGGAAVAVHGRTREQYYSGKADWEIIR 193
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
K + S P+
Sbjct: 194 KVKEAVS--------------------------------------------------IPV 203
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S ED ++K GVM+GRGA PWIF+E+ E
Sbjct: 204 IGNGDVTSAEDAVR-MQKLTGCDGVMVGRGAQGNPWIFRELVE 245
>gi|348174950|ref|ZP_08881844.1| dihydrouridine synthase TIM-barrel protein nifR3 [Saccharopolyspora
spinosa NRRL 18395]
Length = 387
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/337 (24%), Positives = 137/337 (40%), Gaps = 108/337 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N+ FRRLC+++GA + EM + AL++RH
Sbjct: 29 VVLAPMAGITNVAFRRLCREYGAGLYVCEMITSR----------ALVERH---------- 68
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P L T +E R+ +QL G +P
Sbjct: 69 ----PKTLEMITFDADEH---------------------------PRS----MQLYGVDP 93
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC---MNEVS 437
+ K Q++ ++ + D VD+N GCP+ + ++G GS L + + +++ E +
Sbjct: 94 VTMGKAVQMIVDENLADHVDMNFGCPVPKVTRKGGGSALPYKRRLFADIVSAAVRAAEPA 153
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R GI D+ + + GA+ + LHGRT QRY+ ADW I + +
Sbjct: 154 GIPVTVKFRIGIDDDHITYLDAGRLAEENGAAAVALHGRTAAQRYSGTADWSAIARLKE- 212
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
H RT P+ GNGD
Sbjct: 213 -------------------------HVRT-----------------------IPVLGNGD 224
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
I S +D + ++ GV++GRG L +PW+F++++
Sbjct: 225 IFSADDALRMMAET-GCDGVVVGRGCLGRPWLFRDLQ 260
>gi|313676850|ref|YP_004054846.1| tRNA-u20-dihydrouridine synthase [Marivirga tractuosa DSM 4126]
gi|312943548|gb|ADR22738.1| tRNA-U20-dihydrouridine synthase [Marivirga tractuosa DSM 4126]
Length = 332
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDA------IKSRQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G +
Sbjct: 67 -----------------------------KPI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ T ++ D VD+N GCP++ + +G+G+G+L+ +++ + + + + LP
Sbjct: 79 EAMSMATSIVNVTQP-DLVDINFGCPVKKVVTKGAGAGVLKDVDLMVRLTEAVVKSTDLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + I + +D G +++HGRTR+Q Y +ADW I K
Sbjct: 138 VTVKTRLGWDESSKNIEEVAERLQDVGIKALSIHGRTRQQMYKGEADWSLIAKVK----- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ P++GNGDI S
Sbjct: 193 -NN------PRIN------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + G+MIGR A+ PWIF EIK
Sbjct: 210 PQKALE-YRNRYGVDGLMIGRAAIGYPWIFNEIK 242
>gi|336287978|gb|AEI30274.1| TIM-barrel protein nifR3 family [uncultured microorganism]
Length = 265
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 129/340 (37%), Gaps = 106/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I GK+ L+PL + N FR++ + GADI SEM + ++++ IK E E
Sbjct: 7 ISLTGKILLAPLAGISNSIFRKINRLHGADIVFSEMVSSEGTVRNNKSTIDYIKFSEEER 66
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
G+Q+ G +P ++ + + +EE + +D+N GCP+ + + GS LL+ L G
Sbjct: 67 PIGIQIFGADPRIMAEAARYVEEIFKPELIDINFGCPVRKVISKNGGSALLKDPPLLG-- 124
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
I+ SV+ +
Sbjct: 125 -------------------------------------------------KIVNSVVAAVK 135
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
P+TVK R+G ++ + GA+ ITLH RT+E +T +A+WD I +
Sbjct: 136 T----PVTVKIRSGWRRNKINVIETTKIIEQNGAAAITLHPRTQEDGFTGKANWDLIAEI 191
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 192 KKNIS--------------------------------------------------IPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDIL D LK++ VMI RGAL PWIF+E K
Sbjct: 202 NGDILCGSDAVRMLKET-GCDAVMIARGALGNPWIFEEAK 240
>gi|336436164|ref|ZP_08615877.1| hypothetical protein HMPREF0988_01462 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336008204|gb|EGN38223.1| hypothetical protein HMPREF0988_01462 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 319
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 134/331 (40%), Gaps = 107/331 (32%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L P+ V +LPFR LCK+ G + C EM A +L ++ +L++ H E +QL G
Sbjct: 17 LGPMAGVTDLPFRLLCKEQGVGLICMEMVSAKGILYNNKNTESLLQIHPDETPVSLQLFG 76
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
++P ++++ + +EE+ F+D+N+GCP+ + K GS L++ NP
Sbjct: 77 SDPKIVSEMAKRIEER-PFTFLDINMGCPVPKVVKNKEGSALMK------------NP-- 121
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+Y+ ++ +V+ + + P+T
Sbjct: 122 -------------------------RLVYE------------LVSAVVKAIEK----PVT 140
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
VK R G ++ + GAS + +HGRTREQ Y+ +ADW+ I + +
Sbjct: 141 VKIRKGFDDEHVNAVEIAKIIEEAGASAVAVHGRTREQYYSGKADWEIIRQVKEA----- 195
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
+H P+ GNGD+ S E
Sbjct: 196 --VH-------------------------------------------IPVIGNGDVTSGE 210
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
E+++K G+MI R A PWIF E+
Sbjct: 211 Q-AEAMRKQTGCDGIMIARAAEGNPWIFSEL 240
>gi|317472901|ref|ZP_07932207.1| dihydrouridine synthase [Anaerostipes sp. 3_2_56FAA]
gi|316899621|gb|EFV21629.1| dihydrouridine synthase [Anaerostipes sp. 3_2_56FAA]
Length = 332
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 131/334 (39%), Gaps = 109/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+P+ V +LP+R LCK+ GA + +EM A + +SP L+ + E E Q+
Sbjct: 21 FLLAPMAGVTDLPYRLLCKEMGAGLLYTEMVSAKGMYYNSPNTGPLLAKEEWERPIAAQI 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ ++E M D +D+N+GCP+ I G GS L++ +P
Sbjct: 81 FGSEPELMADMAVRVQE-MGFDLIDINMGCPVPKIVNNGDGSALMK------------DP 127
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K + + +++ S+P
Sbjct: 128 VLAGKIIKAMADRL-------------------------------------------SVP 144
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+TVK R G D ++ M + + GA+ + +HGRTREQ Y+ +ADWD I + + S
Sbjct: 145 VTVKIRKGF-DDEHVNAVEMARIAEQSGAAAVAVHGRTREQYYSGKADWDIIRQVKEAVS 203
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGDI
Sbjct: 204 --------------------------------------------------IPVIGNGDIN 213
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S D E++ + G MI RGA PWIF+E+
Sbjct: 214 SPLD-AEAMLRETGCDGFMIARGAKGNPWIFKEL 246
>gi|294495034|ref|YP_003541527.1| hypothetical protein Mmah_0350 [Methanohalophilus mahii DSM 5219]
gi|292666033|gb|ADE35882.1| TIM-barrel protein, nifR3 family [Methanohalophilus mahii DSM 5219]
Length = 317
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/341 (24%), Positives = 135/341 (39%), Gaps = 108/341 (31%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ G L L+P+ V NL +R +C++ GA +EM + +L + + +
Sbjct: 5 KVRLGGNLLLAPMAEVTNLAYRVVCRRRGASFAFTEMVNSEAILHGNRKSY--------- 55
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
QMA D +FG+
Sbjct: 56 ------------------------QMASSCAD----------------------EGIFGI 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ GN+P + K +LE +D+N GCP I K G+GS L+++ ++L++++ C+
Sbjct: 70 QIFGNSPVSMAKAAGILENTKFPSIIDINAGCPSPRIRKTGAGSMLMEKPDVLENIVRCV 129
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E ++P+TVK R FRD + +
Sbjct: 130 VESVTVPVTVKIRV---------------FRD-------------------------VSQ 149
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+L SR N GAS IT+HGRT Q+Y+ AD Y + + S P+
Sbjct: 150 TVELASRLEN-----------AGASAITVHGRTATQQYSGLADHLYARRIKEELS-IPVI 197
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI + + L + G+MIGR A+ P +F I+
Sbjct: 198 ANGDIRN-GAFAAQLLEYTGCDGLMIGRAAMGDPDVFLRIE 237
>gi|157413462|ref|YP_001484328.1| dihydrouridine synthase TIM-barrel protein nifR3 [Prochlorococcus
marinus str. MIT 9215]
gi|157388037|gb|ABV50742.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Prochlorococcus
marinus str. MIT 9215]
Length = 341
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 135/335 (40%), Gaps = 109/335 (32%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
K+ LSPL V + FRRL +KW + + +EM AT L K FG
Sbjct: 19 KVMLSPLAGVTDDIFRRLVRKWAPNSLLFTEMINATSLKKG----------------FGT 62
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q K Q+ E+ V G+Q+
Sbjct: 63 Q----------KINQIDLEEGPV------------------------------GIQIFDY 82
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
P+ +++ + E+ +D+N+GCP++ I K+G GS L++ + ++ + +
Sbjct: 83 RPHAVSEAAKQAEDSGAF-LIDINMGCPVKKIAKKGGGSALIKDRKLAMELVKNVVKAVK 141
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+TVKTR G I +F+ K +D GA++IT+HGRTR+Q ++ ++DW+ I + L
Sbjct: 142 IPVTVKTRLGWDSKEENIEDFLFKLQDAGATMITIHGRTRKQGFSGKSDWEMIGRLKSLL 201
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
P+ NGDI
Sbjct: 202 E--------------------------------------------------IPVIANGDI 211
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ +D LKK+ + GVMIGRG L PW EI
Sbjct: 212 KNPDDALNCLKKTNA-DGVMIGRGILGSPWKIGEI 245
>gi|331086547|ref|ZP_08335625.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410380|gb|EGG89812.1| hypothetical protein HMPREF0987_01928 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 325
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 136/343 (39%), Gaps = 111/343 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LCK+ GA + C EM A + K ++D
Sbjct: 12 VELENPYILAPMAGVTDLPFRLLCKEQGAGLLCMEMVSAKAIQ---------YKNKNTQD 62
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L + EE+ V Q
Sbjct: 63 LLRIH----------------EEERPVSL------------------------------Q 76
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G+ P +++ + +EE + +D+N+GCP+ I K G GS L+++ ++ +++
Sbjct: 77 LFGSEPDTISEIAKQIEE-LPFAILDINMGCPVPKIVKNGEGSALMKQPKLVYEIVSKTV 135
Query: 435 EVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ P+TVK R G D++ I+ + G + + +HGRTREQ Y+ +ADW+ I
Sbjct: 136 KAIQKPVTVKIRKGF--DDSCINAVEIAKVIEEAGGAAVAVHGRTREQYYSGKADWEIIR 193
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
K + S P+
Sbjct: 194 KVKEAVS--------------------------------------------------IPV 203
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S ED ++K GVM+GRGA PWIF+E+ E
Sbjct: 204 IGNGDVTSAEDAVR-MQKLTGCDGVMVGRGAQGNPWIFRELVE 245
>gi|333378038|ref|ZP_08469771.1| hypothetical protein HMPREF9456_01366 [Dysgonomonas mossii DSM
22836]
gi|332884058|gb|EGK04338.1| hypothetical protein HMPREF9456_01366 [Dysgonomonas mossii DSM
22836]
Length = 331
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ +E + L++ + A + E E +Q+
Sbjct: 13 VFLAPMEDVTDMGFRLMCKQFGADMVYTEFVSSDALIRHVNKTQAKLTISEEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + ++ EE + +D+N GCP++ + +G+GSG+++ P
Sbjct: 73 YGREVDAMVEAAKICEEANP-NILDINFGCPVKKVAGKGAGSGMMK------------TP 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ + T A ++++V +P
Sbjct: 120 ELMVEIT-----------------------------------AAVVKAV--------KIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + +D G +T+HGRTR Q YT ADW+ I +
Sbjct: 137 VTVKTRLGWDHESKIIVELAEQLQDVGIQALTIHGRTRSQMYTGDADWELIGDV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIVGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + VMIGRG++ PWIF+E+K
Sbjct: 209 PEICKRRFDET-GVDAVMIGRGSIGSPWIFEEVK 241
>gi|395802632|ref|ZP_10481884.1| nifR3 family TIM-barrel protein [Flavobacterium sp. F52]
gi|395435073|gb|EJG01015.1| nifR3 family TIM-barrel protein [Flavobacterium sp. F52]
Length = 330
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 147/351 (41%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFRRLCK GAD+ SE + L++ +
Sbjct: 1 MVKIGNIELPEF----PLLLAPMEDVSDPPFRRLCKTHGADLMYSEFISSEGLIRDA--- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ +M +D D P+
Sbjct: 54 -------------------------------IKSRMKLDIFDYER--PV----------- 69
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + ++++ + D VD+N GCP++ + +G+G+G+L+
Sbjct: 70 --------GIQIFGGDEEAMEMSSKIVS-TVKPDLVDINFGCPVKKVVCRGAGAGVLKDV 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + + LP+TVKTR G +++ I + +D G +T+H RTR Q Y
Sbjct: 121 DLMVRLTKAVIKGTDLPVTVKTRLGWDENSINIDEVAERLQDIGIQALTIHARTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+DW +I + NN P+ IT+
Sbjct: 181 GHSDWSHIARVK------NN------PR--------ITM--------------------- 199
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + K I G+MIGR A+ PWIF EIK
Sbjct: 200 -------PIFGNGDIDSPEKALQ-YKNEYGIDGIMIGRAAIGYPWIFNEIK 242
>gi|281422351|ref|ZP_06253350.1| tRNA-dihydrouridine synthase B [Prevotella copri DSM 18205]
gi|281403582|gb|EFB34262.1| tRNA-dihydrouridine synthase B [Prevotella copri DSM 18205]
Length = 328
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 144/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAE----------ALVRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRTT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + + ++P
Sbjct: 78 EDMVEAAKIVE-QAKPDVIDINFGCPVKKVAGKGAGAGMLRNIPLMLDITREVVKAVNVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDCENLIITDLAEQLQDCGIQALTIHGRTRSQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI +
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E+ + ++ + VMIGR +PWIF+EI++
Sbjct: 209 PEEAKLAFERY-GVDAVMIGRATFGRPWIFKEIRD 242
>gi|189464643|ref|ZP_03013428.1| hypothetical protein BACINT_00986 [Bacteroides intestinalis DSM
17393]
gi|189436917|gb|EDV05902.1| TIM-barrel protein, nifR3 family [Bacteroides intestinalis DSM
17393]
Length = 329
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GA++ +E A L++S + + + E +Q+
Sbjct: 13 IFLAPMEDVTDPAFRLMCKKFGANMVYTEFVSADALIRSVSKTEQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++EE D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAARIVEEARP-DILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGD+ +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +MIGR + +PWIF+E++
Sbjct: 209 PQRAKECFELY-GVDAIMIGRASFGRPWIFKEVR 241
>gi|386761125|ref|YP_006234760.1| transcriptional regulator [Helicobacter cinaedi PAGU611]
gi|385146141|dbj|BAM11649.1| transcriptional regulator [Helicobacter cinaedi PAGU611]
Length = 328
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 133/341 (39%), Gaps = 108/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+++ L L+PL +LPFR + K +G DIT SEM + L+ S+ + + ++ E
Sbjct: 2 IEFKNLLMLAPLAGYTDLPFRSVVKDFGVDITVSEMISSHALVYSNKRTLKMTEKSPQEQ 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G+ V+ + ++L Q +D +D+N GCP + G+GSGLL+ NL
Sbjct: 62 PYSVQISGSKEEVIKQAVEILNTQKDIDIIDLNCGCPAPKVANHGNGSGLLKDLNL---- 117
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L K L++E N P
Sbjct: 118 --------LVKIANLIKE---------NAKTPYT-------------------------- 134
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ-ADWDYIEK 493
++K R G D I H +D + + +HGRTR Y K+ D+D I
Sbjct: 135 -------SLKVRLGF--DKKIPHEIAQALKDVKSDFVVVHGRTRADGYKKEKIDYDAIA- 184
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
Y KQ P PL
Sbjct: 185 -------------------------------------YIKQ------------NIPMPLI 195
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NG+I S E + L+ + + +GVMIGR A+ PWIF +IK
Sbjct: 196 ANGEIDSVEKAQKVLEHTGA-NGVMIGRAAITSPWIFWQIK 235
>gi|53715845|ref|YP_101837.1| hypothetical protein BF4566 [Bacteroides fragilis YCH46]
gi|60683764|ref|YP_213908.1| TIM-barrel protein, dihydrouridine synthase [Bacteroides fragilis
NCTC 9343]
gi|265764712|ref|ZP_06092987.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|336407524|ref|ZP_08588021.1| hypothetical protein HMPREF1018_00035 [Bacteroides sp. 2_1_56FAA]
gi|375360668|ref|YP_005113440.1| dihydrouridine synthase [Bacteroides fragilis 638R]
gi|383116343|ref|ZP_09937093.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 3_2_5]
gi|423259675|ref|ZP_17240598.1| hypothetical protein HMPREF1055_02875 [Bacteroides fragilis
CL07T00C01]
gi|423263350|ref|ZP_17242353.1| hypothetical protein HMPREF1056_00040 [Bacteroides fragilis
CL07T12C05]
gi|423270103|ref|ZP_17249075.1| hypothetical protein HMPREF1079_02157 [Bacteroides fragilis
CL05T00C42]
gi|423272441|ref|ZP_17251388.1| hypothetical protein HMPREF1080_00041 [Bacteroides fragilis
CL05T12C13]
gi|423282688|ref|ZP_17261573.1| hypothetical protein HMPREF1204_01111 [Bacteroides fragilis HMW
615]
gi|52218710|dbj|BAD51303.1| putative TIM-barrel enzyme [Bacteroides fragilis YCH46]
gi|60495198|emb|CAH10019.1| putative TIM-barrel protein, possible dihydrouridine synthase
[Bacteroides fragilis NCTC 9343]
gi|251948400|gb|EES88682.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. 3_2_5]
gi|263254096|gb|EEZ25530.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|301165349|emb|CBW24921.1| putative TIM-barrel protein, possible dihydrouridine synthase
[Bacteroides fragilis 638R]
gi|335947428|gb|EGN09219.1| hypothetical protein HMPREF1018_00035 [Bacteroides sp. 2_1_56FAA]
gi|387775985|gb|EIK38088.1| hypothetical protein HMPREF1055_02875 [Bacteroides fragilis
CL07T00C01]
gi|392699648|gb|EIY92822.1| hypothetical protein HMPREF1079_02157 [Bacteroides fragilis
CL05T00C42]
gi|392707645|gb|EIZ00761.1| hypothetical protein HMPREF1056_00040 [Bacteroides fragilis
CL07T12C05]
gi|392708871|gb|EIZ01973.1| hypothetical protein HMPREF1080_00041 [Bacteroides fragilis
CL05T12C13]
gi|404582256|gb|EKA86951.1| hypothetical protein HMPREF1204_01111 [Bacteroides fragilis HMW
615]
Length = 324
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + +MIGRG++ +PWIF+E+K
Sbjct: 209 AAGAKECFERY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|340622501|ref|YP_004740953.1| putative tRNA-dihydrouridine synthase 1 [Capnocytophaga canimorsus
Cc5]
gi|339902767|gb|AEK23846.1| Probable tRNA-dihydrouridine synthase 1 [Capnocytophaga canimorsus
Cc5]
Length = 325
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 139/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++++ IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKIHGADMLYSEFISSEGLIRNA------IKSKQKLDIFDYE- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 67 -----------------------------RPV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D +D+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMALSAKIVE-TVNPDLLDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G +++H RTR Q Y +DW +I + +
Sbjct: 138 VTVKTRLGWDENSINIDEVAERLQDVGIKALSIHARTRAQLYKGHSDWSHIARI-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 ENPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E +K + G+MIGR A+ PWIF EIK
Sbjct: 210 PEKALEYRQKY-GVDGIMIGRAAIGYPWIFNEIKH 243
>gi|146298835|ref|YP_001193426.1| nifR3 family TIM-barrel protein [Flavobacterium johnsoniae UW101]
gi|146153253|gb|ABQ04107.1| tRNA-dihydrouridine synthase B-like protein [Flavobacterium
johnsoniae UW101]
Length = 332
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 146/351 (41%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFRRLCK GAD+ SE + L++ +
Sbjct: 3 MVKIGNIELPEF----PLLLAPMEDVSDPPFRRLCKTHGADMMYSEFISSEGLIRDA--- 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ +M +D D P+
Sbjct: 56 -------------------------------IKSRMKLDIFDYER--PV----------- 71
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + ++++ + D VD+N GCP++ + +G+G+G+L+
Sbjct: 72 --------GIQIFGGDEEAMEMSSKIVS-TVKPDLVDINFGCPVKKVVCRGAGAGVLKDV 122
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + + LP+TVKTR G + + I + +D G +T+H RTR Q Y
Sbjct: 123 DLMVRLTKAVIKGTDLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTIHARTRAQMYK 182
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+DW +I + NN P+ IT+
Sbjct: 183 GHSDWSHIARVK------NN------PR--------ITM--------------------- 201
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + K I G+MIGR A+ PWIF EIK
Sbjct: 202 -------PIFGNGDIDSPEKALQ-YKNEYGIDGIMIGRAAIGYPWIFNEIK 244
>gi|159489528|ref|XP_001702749.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280771|gb|EDP06528.1| predicted protein [Chlamydomonas reinhardtii]
Length = 198
Score = 107 bits (267), Expect = 2e-20, Method: Composition-based stats.
Identities = 65/201 (32%), Positives = 97/201 (48%), Gaps = 53/201 (26%)
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
F+D+N GCPI ++G GS +L++ L ++ + S LP+TVK R G + ++
Sbjct: 1 FLDINCGCPIYEATRRGMGSAMLRKPRALAKMVAGIAADSELPVTVKIRLGENDKKIVVD 60
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
+ DY+ + GA
Sbjct: 61 TVV----------------------------DYLHRA---------------------GA 71
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS-ISG 576
+ +T+HGRT EQRY K ADW + + A+ +P P+ GNGDIL++ Y +++ S +
Sbjct: 72 AAVTVHGRTAEQRYKKAADWAKVGEVAR-STPVPIIGNGDILTH--YEAHARRTESGCTA 128
Query: 577 VMIGRGALIKPWIFQEIKEKK 597
VM GRGALIKPWIFQE KE +
Sbjct: 129 VMAGRGALIKPWIFQEYKEGR 149
>gi|359410023|ref|ZP_09202488.1| TIM-barrel protein, nifR3 family [Clostridium sp. DL-VIII]
gi|357168907|gb|EHI97081.1| TIM-barrel protein, nifR3 family [Clostridium sp. DL-VIII]
Length = 321
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 125/340 (36%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ ++ ++L+P+ V ++ FR LCK+ G + +EM A L S AL++ + E
Sbjct: 6 LTFENNIFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTQALLRIADEEK 65
Query: 315 LFGVQLCGNNPYVLTK-CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
Q+ G P ++ C + L + + +D+N+GCP I K G GS L+ +L
Sbjct: 66 PVAAQIFGREPEIMADICEKYLNSREDICIIDINMGCPAPKIVKNGEGSALMMEPDL--- 122
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Y + K +
Sbjct: 123 ------AYQIVKAIK--------------------------------------------- 131
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS+ P+TVK R G DN F G I +HGRTR+Q Y ADWD I+K
Sbjct: 132 -KVSTKPVTVKFRKGFDDDNVNAVEFAKGMEQAGVDAIAVHGRTRKQMYQGVADWDIIKK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S P+
Sbjct: 191 VKDSVS--------------------------------------------------IPVI 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ S D + LK+ + G+M+ RG+ PWIF++I
Sbjct: 201 GNGDVFSANDAIK-LKRLTNCDGIMVARGSQGNPWIFKQI 239
>gi|254526611|ref|ZP_05138663.1| NifR3 family enzyme [Prochlorococcus marinus str. MIT 9202]
gi|221538035|gb|EEE40488.1| NifR3 family enzyme [Prochlorococcus marinus str. MIT 9202]
Length = 345
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 135/335 (40%), Gaps = 109/335 (32%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
K+ LSPL V + FRRL +KW + + +EM AT L K FG
Sbjct: 23 KVMLSPLAGVTDDIFRRLVRKWAPNSLLFTEMINATSLKKG----------------FGK 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q K Q+ E+ V GVQ+
Sbjct: 67 Q----------KINQIDLEEGPV------------------------------GVQIFDY 86
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
P+ +++ + E+ +D+N+GCP++ I K+G GS L++ + ++ + +
Sbjct: 87 RPHAVSEAAKQAEDSGAF-LIDINMGCPVKKIAKKGGGSALIKDRKLAIELVKNVVKAVK 145
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+TVKTR G I +F+ K +D GA++ITLHGRTR+Q ++ ++DW+ I + L
Sbjct: 146 IPVTVKTRLGWDSKEENIEDFLFKLQDAGATMITLHGRTRKQGFSGKSDWEMIGRLKSLL 205
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
P+ NGDI
Sbjct: 206 E--------------------------------------------------IPVIANGDI 215
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ +D LKK+ + GVMIGRG L PW EI
Sbjct: 216 KNPDDALNCLKKTNA-DGVMIGRGILGSPWKIGEI 249
>gi|188588843|ref|YP_001919615.1| tRNA-dihydrouridine synthase B [Clostridium botulinum E3 str.
Alaska E43]
gi|188499124|gb|ACD52260.1| tRNA-dihydrouridine synthase B [Clostridium botulinum E3 str.
Alaska E43]
Length = 321
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/342 (23%), Positives = 131/342 (38%), Gaps = 107/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ + ++L+P+ V +L FR LCK+ G + C+EM A L S L++ + E
Sbjct: 6 LSFDNNVFLAPMAGVTDLSFRGLCKEMGCGLVCTEMVSAKALYYGSENTQTLLRVSDKEA 65
Query: 315 LFGVQLCGNNPYVLTK-CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
VQ+ G P ++ + C + L + V +D+N+GCP I K GS L
Sbjct: 66 PVAVQIFGREPEIMAEICEKYLNPREDVCIIDINMGCPAPKIVKNKEGSAL--------- 116
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+LE + D V +
Sbjct: 117 ---------------MLEPDLAHDIV-------------------------------KAI 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS P+TVK R G ++ F + GA I +HGRTR+Q Y +DW+ I+K
Sbjct: 131 KKVSKKPVTVKFRKGYDDEHINAVEFGKALEEAGADAIAVHGRTRKQMYEGHSDWEIIKK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 191 VKEAVS--------------------------------------------------IPVL 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S ED + +K+ + G++I RG++ PWIF++I++
Sbjct: 201 GNGDVFSPEDAIK-MKELTNCDGILIARGSMGNPWIFKQIQD 241
>gi|423248012|ref|ZP_17229028.1| hypothetical protein HMPREF1066_00038 [Bacteroides fragilis
CL03T00C08]
gi|423252963|ref|ZP_17233894.1| hypothetical protein HMPREF1067_00538 [Bacteroides fragilis
CL03T12C07]
gi|392657490|gb|EIY51123.1| hypothetical protein HMPREF1067_00538 [Bacteroides fragilis
CL03T12C07]
gi|392660886|gb|EIY54484.1| hypothetical protein HMPREF1066_00038 [Bacteroides fragilis
CL03T00C08]
Length = 324
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLT---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + +MIGRG++ +PWIF+E+K
Sbjct: 209 ATGAKECFERY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|392399022|ref|YP_006435623.1| tRNA-U20-dihydrouridine synthase [Flexibacter litoralis DSM 6794]
gi|390530100|gb|AFM05830.1| tRNA-U20-dihydrouridine synthase [Flexibacter litoralis DSM 6794]
Length = 334
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 139/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK GAD+ +E L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRAVCKACGADMMYTEFISVEGLIRDADKSVEKLDIFDYERPIGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + K T+++E++ + +D+N GCP++ + +G+G+G+L+
Sbjct: 74 FGAELDSMLKATEIVEQENP-EVLDINFGCPVKKVVGKGAGAGILKD------------- 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+LL +++V R+N LP
Sbjct: 120 ---IPKMELLSKEIV-------------------------NRSN--------------LP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + + G +++HGRTR+Q YT +ADW YI + +
Sbjct: 138 VTVKTRLGWDHDSIKILEVAKRLQGVGVQALSIHGRTRKQMYTGEADWSYIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPDIH-------------------------------------------IPIFGNGDINS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E K + G+MIGR A+ PWIF+EIK
Sbjct: 210 PQKALE-YKNRFGVDGIMIGRAAIGYPWIFREIK 242
>gi|313144635|ref|ZP_07806828.1| transcriptional regulator [Helicobacter cinaedi CCUG 18818]
gi|313129666|gb|EFR47283.1| transcriptional regulator [Helicobacter cinaedi CCUG 18818]
Length = 328
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 132/341 (38%), Gaps = 108/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+++ L L+PL +LPFR + K +G DIT SEM + L+ S+ + + ++ E
Sbjct: 2 IEFKNLLMLAPLAGYTDLPFRSVVKGFGVDITVSEMISSHALVYSNKRTLKMTEKSPQEQ 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G+ V+ + ++L Q +D +D+N GCP + G+GSGLL+ NL
Sbjct: 62 PYSVQISGSKEEVIKQAVEILNTQKDIDIIDLNCGCPAPKVANHGNGSGLLKDLNL---- 117
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L K L++E +
Sbjct: 118 --------LVKIANLIKENAKTPYT----------------------------------- 134
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ-ADWDYIEK 493
++K R G D I H +D + + +HGRTR Y K+ D+D I
Sbjct: 135 -------SLKVRLGF--DKKIPHEIAQALKDVKSDFVVVHGRTRADGYKKEKIDYDAIA- 184
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
Y KQ P PL
Sbjct: 185 -------------------------------------YIKQ------------NIPMPLI 195
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NG+I S E + L+ + + +GVMIGR A+ PWIF +IK
Sbjct: 196 ANGEIDSVEKAQKVLEHTGA-NGVMIGRAAITSPWIFWQIK 235
>gi|302339678|ref|YP_003804884.1| hypothetical protein Spirs_3192 [Spirochaeta smaragdinae DSM 11293]
gi|301636863|gb|ADK82290.1| TIM-barrel protein, nifR3 family [Spirochaeta smaragdinae DSM
11293]
Length = 327
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 139/339 (41%), Gaps = 113/339 (33%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G L+L+PL + + FRR+C + GA T +EM L + + + AL++R + E L GV
Sbjct: 5 GNLFLAPLAGITDRGFRRICIEHGAPFTYTEMVSGEALARGNAKTIALLRRAKGEKLLGV 64
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
Q+ ++P + ++E+ +D+N GCP+ + K G+G+ L++
Sbjct: 65 QIFLSSPEQAERALPVIEKADPT-LIDLNCGCPVPKVVKTGAGAALMR------------ 111
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+P E IY+ +++ +++ SS
Sbjct: 112 SP---------------------------ETIYR----------------IVSLLSKSSS 128
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFR---DWGASLITLHGRTREQRYTKQADWDYIEKCA 495
PITVK RTG D+ I N++ + GAS+ITLHGR+R Q Y+ ADWD I +
Sbjct: 129 RPITVKIRTGW--DSKTI-NYLEAAQASESAGASMITLHGRSRSQGYSGSADWDTIAELV 185
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
Q P+ GN
Sbjct: 186 QTVR--------------------------------------------------VPVIGN 195
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GD S E L ++ SGVM RGA+ P+IF++ +
Sbjct: 196 GDAFSPEAAKRLLMET-GCSGVMFARGAMGNPFIFEQTR 233
>gi|422004868|ref|ZP_16352079.1| tRNA-dihydrouridine synthase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|417256464|gb|EKT85884.1| tRNA-dihydrouridine synthase [Leptospira santarosai serovar
Shermani str. LT 821]
Length = 318
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E A EL+ +P+ + + E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNADELVHRAPKALNMFRFDPKER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGLADWDAIGEI-KTRRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|295136512|ref|YP_003587188.1| tRNA-dihydrouridine synthase [Zunongwangia profunda SM-A87]
gi|294984527|gb|ADF54992.1| tRNA-dihydrouridine synthase [Zunongwangia profunda SM-A87]
Length = 330
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+ M + ++LP
Sbjct: 79 ESMLESVEIVEKSGP-DIIDINFGCPVKKVVSKGAGAGILKDVDLMVSLTKAMVKHTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I++HGRTR Q Y ADW I +
Sbjct: 138 ITVKTRLGWDHDSIKIMEVAERLQDVGCKAISIHGRTRAQMYKGVADWKPIADV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PEKAVE-MRDQYGLDGAMIGRASIGNPWFFREVK 242
>gi|456862040|gb|EMF80626.1| TIM-barrel protein, nifR3 family [Leptospira weilii serovar Topaz
str. LT2116]
Length = 318
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 107/341 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSSTRRICRKFGAAFSYTEFVNTDELVHRAPKAFKMFRFHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLETIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPALAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G WD
Sbjct: 135 VPVTAKIRIG---------------------------------------WD--------- 146
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
S+ N + + G +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 147 SKSRNYLE-VSKILEESGVDALTVHGRTKEMAYTGLADWDAIGEV-KTQRKIPVFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
SYE+ +++ ++ GV+IGR A+ PWIF +IK+++L+
Sbjct: 205 KSYEEANSRMREY-NLDGVLIGRNAIGNPWIFSKIKKEELY 244
>gi|198274476|ref|ZP_03207008.1| hypothetical protein BACPLE_00624 [Bacteroides plebeius DSM 17135]
gi|198272678|gb|EDY96947.1| TIM-barrel protein, nifR3 family [Bacteroides plebeius DSM 17135]
Length = 328
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 144/351 (41%), Gaps = 107/351 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ +E + L++S + + E E +Q+
Sbjct: 13 VLLAPMEDVTDPAFRLMCKQFGADMVYTEFVSSDALIRSVGKTMLKLNISEKERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+GSG+LQ N P
Sbjct: 73 YGKDTDTMVEAARIV-EQAKPDILDLNFGCPVKRVAGKGAGSGMLQ-----------NVP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDAEHKIIVELAEQLQDCGIEALTIHGRTRAQMYTGEADWTLIGEVKK---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ R P+ GNGDI +
Sbjct: 193 --------NPRMR------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDIYAIVWKWR 609
+ E ++ + +MIGR + +PWIF+E+K + ++ + +KWR
Sbjct: 209 PQRAKECFEQY-GVDAIMIGRASFGRPWIFKEVKHYLETGEELPPLSFKWR 258
>gi|340617654|ref|YP_004736107.1| tRNA-dihydrouridine synthase B [Zobellia galactanivorans]
gi|339732451|emb|CAZ95719.1| tRNA-dihydrouridine synthase B [Zobellia galactanivorans]
Length = 331
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++E Q D +D+N GCP++ + +G+G+G+L+ +++ S+ M E ++LP
Sbjct: 79 DSMLQSVDIVE-QSKPDIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTKAMVERTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I +HGRTR Q Y +ADW I + +
Sbjct: 138 ITVKTRLGWDHDSIKIVEVAERLQDVGCKAIAIHGRTRVQMYKGEADWKPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PE-AAMRMRDEYGLDGAMIGRASIGYPWFFDEVK 242
>gi|421112629|ref|ZP_15573086.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str. JET]
gi|410802274|gb|EKS08435.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str. JET]
Length = 318
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E A EL+ +P+ + + E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNADELVHRAPKALNMFRFDPKER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGLADWDAIGEI-KTRRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|373450680|ref|ZP_09542653.1| tRNA-dihydrouridine synthase (similar to nitrogen regulation
protein nifR3) [Wolbachia pipientis wAlbB]
gi|371932115|emb|CCE77665.1| tRNA-dihydrouridine synthase (similar to nitrogen regulation
protein nifR3) [Wolbachia pipientis wAlbB]
Length = 316
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 131/332 (39%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + ++L VQL
Sbjct: 14 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---MQKAKVDELTAVQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P V+ + + L E M +D+N GCP++ + +GS L++
Sbjct: 71 AGCEPDVMAEAAK-LNEGMGAKIIDINFGCPVKKVVNGYAGSALMRDEK----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E VV V V P
Sbjct: 119 ----KAAEIIEA--VVKAVSV--------------------------------------P 134
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 135 VTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV------ 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI S
Sbjct: 189 --------------------------KEQ------------------VKIPVIVNGDIKS 204
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+D +LK+S + GVMIGRGA KPW+ +
Sbjct: 205 LDDVQSALKESGA-DGVMIGRGAYGKPWLINQ 235
>gi|85817905|gb|EAQ39073.1| dihydrouridine synthase (Dus) [Dokdonia donghaensis MED134]
Length = 330
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 133/334 (39%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDAAKSVMKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++E D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGAVEESMLRSVEIVEAS-GPDIIDINFGCPVKKVVSKGAGAGILKDIDL---------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K T+ M E + LP
Sbjct: 123 --MVKLTK-------------------------------------------SMVEHTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + +D G + I++HGRTR Q Y ADW I +
Sbjct: 138 VTVKTRLGWDHESIKIVEVAERLQDVGCAAISIHGRTRAQMYKGDADWKPIAAV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVNS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PERAVE-MRDEYGLDGAMIGRASIGYPWFFNEVK 242
>gi|160939910|ref|ZP_02087257.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
gi|158437344|gb|EDP15109.1| hypothetical protein CLOBOL_04801 [Clostridium bolteae ATCC
BAA-613]
Length = 321
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 130/333 (39%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR LC++ GA +EM A +L ++ L++ +E VQL
Sbjct: 14 VILAPMAGVTDLPFRVLCREQGAGCVVTEMVSAKAVLYNNKNTRELLQIDPAERPAAVQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ + LEE D++DVN+GCP+ I G GS L++ NP
Sbjct: 74 FGSEPDIMAEIAARLEEG-PYDYIDVNMGCPVPKIVNNGEGSALMK------------NP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+RA + V+T M + P
Sbjct: 121 ----------------------------------------ERA---KEVLTAMVKAVKKP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + + F G + + +HGRTREQ Y+ +ADWD I
Sbjct: 138 VTVKFRKGFNDLSVNAVEFAKMAESCGVAAVAVHGRTREQYYSGKADWDII--------- 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
R K+A P+ GNGDI +
Sbjct: 189 -----------------------------RQVKEA------------VRIPVIGNGDIFT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ED LK++ G+M+ RGA PW+F I
Sbjct: 208 PEDAGRMLKET-GCDGIMVARGAKGNPWLFGRI 239
>gi|436835179|ref|YP_007320395.1| TIM-barrel protein, nifR3 family [Fibrella aestuarina BUZ 2]
gi|384066592|emb|CCG99802.1| TIM-barrel protein, nifR3 family [Fibrella aestuarina BUZ 2]
Length = 330
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/336 (26%), Positives = 134/336 (39%), Gaps = 107/336 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++ + + + E E G+QL
Sbjct: 14 LLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++ + +C + + + D +D+N GCP++ + +G+G+ LLQ
Sbjct: 74 FGSDVQTMGECAK-IATRANPDLIDINYGCPVKQVACRGAGAALLQD------------- 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K Q+ + VVD + LP
Sbjct: 120 --IPKMVQM--TKAVVD--------------------------------------ATHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + +D G +T+HGRTR Q Y ADW
Sbjct: 138 VTVKTRLGWDDNTKNILEVAERLQDIGIQALTIHGRTRAQLYKGDADW------------ 185
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQ-RYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
TL GR +E R T P++GNGDI
Sbjct: 186 --------------------TLIGRVKENPRIT-----------------IPIFGNGDID 208
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
S E E K + GVMIGR ++ PWIF EIK
Sbjct: 209 SPEKAVE-YKNRYGVDGVMIGRASIGYPWIFNEIKH 243
>gi|426402132|ref|YP_007021103.1| transcription regulator-like protein yacF [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425858800|gb|AFX99835.1| transcription regulator-like protein yacF [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 337
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 54/222 (24%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+QL G P ++ + Q+ E DFVD+N GCP+ + K+G+GS +L+ +Q +++
Sbjct: 68 GIQLFGEEPEIVARAAQVAEADGC-DFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVS 126
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +P+T+K RTG WD
Sbjct: 127 TVKAAIKIPLTIKIRTG---------------------------------------WDAN 147
Query: 492 EKCA-QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+ A ++C NI +N G S + +HGRTR Q YT ADWD+I + +
Sbjct: 148 SRNATEIC----NIAYN-------EGVSWVAIHGRTRAQSYTGLADWDFIADV-KANTKI 195
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
P+ GNGDIL+ L++S GVMIGRG L P+IF +
Sbjct: 196 PILGNGDILTPRQANLRLQQS-GCDGVMIGRGCLKNPFIFMD 236
>gi|42521773|ref|NP_967153.1| transcription regulator homolog yacF [Bdellovibrio bacteriovorus
HD100]
gi|39574303|emb|CAE77807.1| transcription regulator homolog yacF [Bdellovibrio bacteriovorus
HD100]
Length = 337
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 104/222 (46%), Gaps = 54/222 (24%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+QL G P ++ + Q+ E DFVD+N GCP+ + K+G+GS +L+ +Q +++
Sbjct: 68 GIQLFGEEPEIVARAAQVAEADGC-DFVDLNFGCPVPKVVKKGAGSAILKDPAAVQKMVS 126
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +P+T+K RTG WD
Sbjct: 127 TVKAAIKIPLTIKIRTG---------------------------------------WDAN 147
Query: 492 EKCA-QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+ A ++C NI +N G S + +HGRTR Q YT ADWD+I + +
Sbjct: 148 SRNATEIC----NIAYN-------EGVSWVAIHGRTRAQSYTGLADWDFIADV-KANTKI 195
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
P+ GNGDIL+ L++S GVMIGRG L P+IF +
Sbjct: 196 PILGNGDILTPRQANLRLQQS-GCDGVMIGRGCLKNPFIFMD 236
>gi|340350395|ref|ZP_08673387.1| tRNA-dihydrouridine synthase [Prevotella nigrescens ATCC 33563]
gi|339608473|gb|EGQ13368.1| tRNA-dihydrouridine synthase [Prevotella nigrescens ATCC 33563]
Length = 323
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 133/332 (40%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++ K++GA + +E A +++S I E E G+Q+
Sbjct: 13 LFLAPMEDVTDIGFRKMSKRFGAAMVYTEFVSADAVIRSIKSTLNKIVIDEEERPVGIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ+ D +D+N GCP++ + +G+GSG+L+ N P
Sbjct: 73 YGKDVESMVEAAKIV-EQVKPDVIDINFGCPVKKVANKGAGSGMLK-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I + V+ +N P
Sbjct: 121 LLL----------------------------------------EITREVVKAVNT----P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D + S + VMIGR PW+F E
Sbjct: 209 VADAQKRF-DSYGVDAVMIGRATFGCPWLFSE 239
>gi|396078227|dbj|BAM31603.1| transcriptional regulator [Helicobacter cinaedi ATCC BAA-847]
Length = 246
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 86/341 (25%), Positives = 132/341 (38%), Gaps = 108/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+++ L L+PL +LPFR + K +G DIT SEM + L+ S+ + + ++ E
Sbjct: 2 IEFKNLLMLAPLAGYTDLPFRSVVKGFGVDITVSEMISSHALVYSNKRTLKMTEKSPQEQ 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G+ V+ + ++L Q +D +D+N GCP + G+GSGLL+ NL
Sbjct: 62 PYSVQISGSKEEVIKQAVEILNTQKDIDIIDLNCGCPAPKVANHGNGSGLLKDLNL---- 117
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L K L++E +
Sbjct: 118 --------LVKIANLIKENAKTPYT----------------------------------- 134
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ-ADWDYIEK 493
++K R G D I H +D + + +HGRTR Y K+ D+D I
Sbjct: 135 -------SLKVRLGF--DKKIPHEIAQALKDVKSDFVVVHGRTRADGYKKEKIDYDAIA- 184
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
Y KQ P PL
Sbjct: 185 -------------------------------------YIKQ------------NIPMPLI 195
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NG+I S E + L+ + + +GVMIGR A+ PWIF +IK
Sbjct: 196 ANGEIDSVEKAQKVLEHTGA-NGVMIGRAAITSPWIFWQIK 235
>gi|293373770|ref|ZP_06620116.1| TIM-barrel protein, nifR3 family [Bacteroides ovatus SD CMC 3f]
gi|292631260|gb|EFF49892.1| TIM-barrel protein, nifR3 family [Bacteroides ovatus SD CMC 3f]
Length = 331
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ +E + L+++ + + ++E +Q+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADMAYTEFVSSDALIRAVSKTAQKLSISDAERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAAKIV-EQAQPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 KMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E I VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDHY-GIDAVMIGRASFGRPWIFKEVK 241
>gi|298482601|ref|ZP_07000786.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. D22]
gi|298271308|gb|EFI12884.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. D22]
Length = 331
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+EIK
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEIK 241
>gi|410099087|ref|ZP_11294060.1| hypothetical protein HMPREF1076_03238 [Parabacteroides goldsteinii
CL02T12C30]
gi|409219568|gb|EKN12529.1| hypothetical protein HMPREF1076_03238 [Parabacteroides goldsteinii
CL02T12C30]
Length = 328
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V ++ FR +CK++GAD+ V TE + S
Sbjct: 13 VFLAPMEDVTDISFRLMCKRFGADM------VYTEFVSSD-------------------- 46
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L + +E++ V + +Q+ G
Sbjct: 47 ------ALIRSVNKTQEKLTV-----------------------AEDERPVAIQIYGKEV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++ E D +D+N GCP++ + +G+G+G+L+ ++ + + + ++P
Sbjct: 78 DAMVEAAKICEAARP-DILDINFGCPVKKVAGKGAGAGMLRNIPLMLEITKEVVKAVNIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G DN II + + +D G + +++HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADNKIIVDLAEQLQDCGIAALSIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGD+ S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + + GVMIGRG++ +PWIF+E+K
Sbjct: 209 AEICKQRFDNY-GVDGVMIGRGSIGRPWIFREVK 241
>gi|406673399|ref|ZP_11080622.1| hypothetical protein HMPREF9700_01164 [Bergeyella zoohelcum CCUG
30536]
gi|405586585|gb|EKB60345.1| hypothetical protein HMPREF9700_01164 [Bergeyella zoohelcum CCUG
30536]
Length = 329
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR+LCK GAD+ SE + L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRKLCKMHGADLMYSEFISSEGLIRDAIKSRKKLDIFDYERPIGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + EE MA+ V++ P
Sbjct: 74 FGGD-----------EEAMAMSAKIVDIVQP----------------------------- 93
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 94 ----------------DLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTDLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + ++ G +T+H RTR Q Y +ADW++I + Q
Sbjct: 138 VTVKTRLGWDTASINIDEVAERLQETGIKALTIHARTRAQMYKGEADWEHISRIKQ---- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ NI P++GNGDI S
Sbjct: 194 NPNI--------------------------------------------EIPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E +K + G+MIGR A+ PWIF EIK+
Sbjct: 210 PKKAQEYREKY-ACDGIMIGRAAIGYPWIFNEIKQ 243
>gi|359729027|ref|ZP_09267723.1| tRNA-dihydrouridine synthase [Leptospira weilii str. 2006001855]
Length = 318
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 107/341 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKAFKMFRFHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PIAF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPALAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G W + E R +Y+E L
Sbjct: 135 VPVTAKIRIG-----------------WDS----------ESR-------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ G S +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGVSALTVHGRTKEMAYTGLADWDAIGEV-KARRKIPVFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
SYE+ +++ ++ GV+IGR A+ PWIF +IK+++L+
Sbjct: 205 KSYEEANSRMREY-NLDGVLIGRNAIGNPWIFSKIKKEELY 244
>gi|187736076|ref|YP_001878188.1| nifR3 family TIM-barrel protein [Akkermansia muciniphila ATCC
BAA-835]
gi|187426128|gb|ACD05407.1| TIM-barrel protein, nifR3 family [Akkermansia muciniphila ATCC
BAA-835]
Length = 334
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 124/296 (41%), Gaps = 82/296 (27%)
Query: 315 LFGVQLCG-NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR------ 367
LF + G +P T C +L + M +FV S G+LQ
Sbjct: 19 LFLAPMAGVTDPIFRTICKELGVDVMVTEFV---------------SAEGILQAWERNRR 63
Query: 368 -------ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G+QL G + + + +++ + DF+D+N GCP+ + + GS LL
Sbjct: 64 YTKIENAHRPIGIQLFGADGNHMGEAARIILDHEKPDFIDINFGCPVPKVVGKNGGSSLL 123
Query: 421 QRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTR 478
+ +L SV + + +P+T K R G
Sbjct: 124 KDLPLLASVAGGVVKAVGERIPVTAKIRIG------------------------------ 153
Query: 479 EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538
WD+ CA R + G S+IT+HGRTR Q+Y+ A+WD
Sbjct: 154 ---------WDFQSLCAMDACR----------LLENEGISMITIHGRTRSQQYSGTANWD 194
Query: 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
I++CA+ S P+ GNGDI S +K++ ++SGVMIGR A+ PWIF + K
Sbjct: 195 IIDECARAMS-VPVIGNGDI-STPQAVAYVKENTAVSGVMIGRAAMENPWIFGDAK 248
>gi|300776181|ref|ZP_07086040.1| tRNA-dihydrouridine synthase B [Chryseobacterium gleum ATCC 35910]
gi|300505314|gb|EFK36453.1| tRNA-dihydrouridine synthase B [Chryseobacterium gleum ATCC 35910]
Length = 331
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/351 (25%), Positives = 143/351 (40%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N E + L L+P+ V + PFRRLCK GAD+ SE + L++ +
Sbjct: 1 MIKIGNIELPEF----PLLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA--- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
IK + D+F + P+
Sbjct: 54 ---IKSRKKLDIFDYER------------------------------PV----------- 69
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
G+Q+ G + + +++E + D VD+N GCP++ + +G+G+G+L+
Sbjct: 70 --------GIQIFGGDEEAMAMSARIVE-TVNPDLVDINFGCPVKKVVCKGAGAGVLKDI 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + + + L +TVKTR G + I + ++ G +T+H RTR Q Y
Sbjct: 121 DLMVRLTKAVVSSTHLSVTVKTRLGWDSTSINIDEVAERLQETGIKALTIHARTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW++I + Q + NI
Sbjct: 181 GEADWEHISRIKQ----NPNI--------------------------------------- 197
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E E K+ + G+MIGR A+ PWIF EIK
Sbjct: 198 -----EIPIFGNGDIDSAEKALE-YKQKYACDGIMIGRAAIGYPWIFNEIK 242
>gi|393785777|ref|ZP_10373923.1| hypothetical protein HMPREF1068_00203 [Bacteroides nordii
CL02T12C05]
gi|392661396|gb|EIY54982.1| hypothetical protein HMPREF1068_00203 [Bacteroides nordii
CL02T12C05]
Length = 326
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K TQ L + +Q+ G +
Sbjct: 52 -------VNKTTQKLS---------------------------ICDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 EAMVGAARIVEEAQP-DILDINFGCPVKKVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + + +HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALAIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ + +MIGRG++ +PWIF+E+K
Sbjct: 209 VATAKACFDRY-GVDAIMIGRGSIGRPWIFREVK 241
>gi|417780200|ref|ZP_12427966.1| TIM-barrel protein, nifR3 family [Leptospira weilii str.
2006001853]
gi|410779667|gb|EKR64279.1| TIM-barrel protein, nifR3 family [Leptospira weilii str.
2006001853]
Length = 318
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 148/341 (43%), Gaps = 107/341 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKAFKMFRFHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPALAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G W + E R +Y+E L
Sbjct: 135 VPVTAKIRIG-----------------WDS----------ESR-------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ G S +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGVSALTVHGRTKEMAYTGLADWDAIGEV-KARRKIPVFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
SYE+ +++ ++ GV+IGR A+ PWIF +IK+++L+
Sbjct: 205 KSYEEANSRMREY-NLDGVLIGRNAIGNPWIFSKIKKEELY 244
>gi|212550478|ref|YP_002308795.1| tRNA-dihydrouridine synthase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548716|dbj|BAG83384.1| tRNA-dihydrouridine synthase [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 340
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 122/360 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V N+ FR LCK +GAD+ V TE + + ALI RH +
Sbjct: 20 VFLAPMEGVTNVYFRSLCKSFGADM------VYTEFISAD----ALI-RHVDK------- 61
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++ ++ + +N PI VQ+ G +
Sbjct: 62 --------------IQGKLKI----INSEHPI-------------------AVQIYGQDK 84
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ----RANILQSVITCMNEV 436
+ + ++ EE M DF+D+N GCP++ I ++ +G+G+L+ I Q V+ +N
Sbjct: 85 DTMVEAARICEE-MQPDFLDLNFGCPVKKIVRRNAGAGMLRVPKKMIEITQQVVHSVN-- 141
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+PITVKTR G +++ II + + +D G +L+T+HGRT Q Y+ +ADW+ I
Sbjct: 142 --IPITVKTRLGWDENSKIIVDLAERLQDTGIALLTIHGRTGSQMYSGKADWNLIGAV-- 197
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
NN P+ YI P+ GNG
Sbjct: 198 ----KNN------PRM--------------------------YI----------PICGNG 211
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK---------EKKLFDIYAIVWK 607
DI+S + ++ + + VMIGR ++ PWIFQE+K KK F+ Y V K
Sbjct: 212 DIVSPQQCEQAFNRY-GVDAVMIGRASIGAPWIFQEVKYYLKYNDLAPKKSFEYYLSVLK 270
>gi|353327911|ref|ZP_08970238.1| NifR3 family protein [Wolbachia endosymbiont wVitB of Nasonia
vitripennis]
Length = 316
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + ++L VQL
Sbjct: 14 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---MQKAKVDELTAVQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P V+ + + L E M +D+N GCP++ + +GS L++
Sbjct: 71 AGCEPDVMAEAAK-LNEGMGAKIIDINFGCPVKKVVNGYAGSALMRDEK----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E VV V V P
Sbjct: 119 ----KAAEIIEA--VVKAVSV--------------------------------------P 134
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 135 VTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV------ 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI S
Sbjct: 189 --------------------------KEQ------------------VKIPVIVNGDIKS 204
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D +LK+S + GVMIGRGA KPW+ +
Sbjct: 205 LNDVQSALKESGA-DGVMIGRGAYGKPWLINQ 235
>gi|281424760|ref|ZP_06255673.1| tRNA-dihydrouridine synthase [Prevotella oris F0302]
gi|281401130|gb|EFB31961.1| tRNA-dihydrouridine synthase [Prevotella oris F0302]
Length = 334
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 148/343 (43%), Gaps = 106/343 (30%)
Query: 254 KIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ + L+L+P+ V ++ FR LCK++GA + V TE + + A+I+ +S
Sbjct: 5 KLDFGERPLFLAPMEDVTDIGFRMLCKRYGAAM------VYTEFVSAD----AIIRSIKS 54
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
++MA++ + P+ G
Sbjct: 55 T----------------------LDKMAIN----DAERPV-------------------G 69
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ G + + + +++E Q+ D +D+N GCP++ + +G+GSG+L+ +L +
Sbjct: 70 IQIYGRDVESMVEAAKIVE-QVKPDLIDLNFGCPVKKVAGKGAGSGMLRNIPLLLDITRN 128
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + S P+TVKTR G D+ II + + +D G +T+HGRTR Q YT +ADW I
Sbjct: 129 VVKAVSTPVTVKTRLGWDNDSLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIG 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ N IH P+
Sbjct: 189 NV-----KSNPRIH-------------------------------------------IPI 200
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI + E+ + + VM+GR +PW+F+E+++
Sbjct: 201 IGNGDITTPEEAKHAFDDY-GVDAVMVGRATFGRPWVFKEMRD 242
>gi|408500741|ref|YP_006864660.1| tRNA-dihydrouridine synthase [Bifidobacterium asteroides PRL2011]
gi|408465565|gb|AFU71094.1| tRNA-dihydrouridine synthase [Bifidobacterium asteroides PRL2011]
Length = 392
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/359 (22%), Positives = 136/359 (37%), Gaps = 104/359 (28%)
Query: 236 SGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVAT 294
+G D +K+ + I + LSP+ V N PFR LC+++G D + EM A
Sbjct: 2 AGTETDRLTLKVAPVQLGPITVPVPVMLSPMAGVTNWPFRLLCREYGPDGLYVGEMVTAR 61
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
L+ +P+ + L + E + +QL G +P ++ + T+++ + VD +D+N GCP+
Sbjct: 62 ALVARNPKAFRLCRFAPKEKVRSLQLYGVDPQIMEQATRMVVDAGWVDHIDMNFGCPVPK 121
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
+ + G GS L + +LF
Sbjct: 122 VTRHGGGSALPWKTDLF------------------------------------------- 138
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
S L+ R + + + +P+T K R GI + ++ G + ITLH
Sbjct: 139 --SELVHR-------VVAVCSPAGIPVTAKIRVGIDHQHETFLEAAHIAQEEGCAAITLH 189
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
RT + Y ADWD I + Q
Sbjct: 190 ARTTAEYYGGHADWDRIAELVQAVD----------------------------------- 214
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P++GNGDI + ED + ++ +GV IGRG +PW+F +I
Sbjct: 215 ---------------IPVFGNGDIWTAEDALDMFAQT-GCAGVAIGRGCQGRPWLFADI 257
>gi|421099530|ref|ZP_15560182.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str.
200901122]
gi|410797515|gb|EKR99622.1| TIM-barrel protein, nifR3 family [Leptospira borgpetersenii str.
200901122]
Length = 318
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 144/341 (42%), Gaps = 109/341 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHKAPKAFKMFRLHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I M + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPVLAGKIIEAMKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G W + A +Y+E L
Sbjct: 135 VPVTAKIRIG-----------------WDS-----------------ASRNYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI-EKCAQLCSPAPLYGNGD 557
+ G +T+HGRT+E YT ADWD I E AQ P++GNGD
Sbjct: 160 --------------EESGIDALTVHGRTKEMAYTGFADWDAIGELKAQ--RKIPVFGNGD 203
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
I SYE+ + K S+ GV+IGR A+ PWIF + K++KL
Sbjct: 204 IKSYEEANSKINKY-SLDGVLIGRNAIGNPWIFSKTKKEKL 243
>gi|376316743|emb|CCG00126.1| tRNA-dihydrouridine synthase B [uncultured Flavobacteriia
bacterium]
Length = 331
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 134/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CKK+GAD+ +E + L++ + + + E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRAVCKKYGADLMYTEFISSEGLIRDAAKSTMKLDIFEYERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + + EQ D +D+N GCP++ + +G+G+G+L+
Sbjct: 74 FGADIGPMREAAA-IAEQAGPDIIDINYGCPVKQVALKGAGAGILRD------------- 119
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K ++ +E V TC SLP
Sbjct: 120 --IPKMVEMTKE-----------------------------------IVNTC-----SLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + +D G + I++HGRTR Q Y ADW I +
Sbjct: 138 VTVKTRLGWDDGSRHIVEVAERLQDVGIAAISIHGRTRAQMYKGDADWSLI------AAV 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN N P++GNGDI +
Sbjct: 192 KNNHRMNI------------------------------------------PVFGNGDINT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E ++ + G+MIGR ++ PWIF EIK
Sbjct: 210 PEKTVE-YRERFGVDGIMIGRASIGSPWIFNEIKH 243
>gi|189459730|ref|ZP_03008515.1| hypothetical protein BACCOP_00358 [Bacteroides coprocola DSM 17136]
gi|189433577|gb|EDV02562.1| TIM-barrel protein, nifR3 family [Bacteroides coprocola DSM 17136]
Length = 328
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 113/368 (30%)
Query: 245 IKIKNSEKKKIDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+KI+N ID K + L+P+ V + FR LCK++GAD+ +E + L++S +
Sbjct: 1 MKIRN-----IDLGDKPVLLAPMEDVTDPAFRLLCKEFGADMVYTEFVSSDALIRSVGKT 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ ++E +Q+ G + + + +++ EQ D +D+N GCP++ + +G+GSG
Sbjct: 56 MLKLNISDAERPVAIQIYGKDTDTMVEAARIV-EQANPDILDLNFGCPVKRVAGKGAGSG 114
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+LQ N P +L + VVD V +
Sbjct: 115 MLQ-----------NVPKMLEIT------KAVVDAVKI---------------------- 135
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
P+TVKTR G ++ II + +D G +T+HGRTR Q YT
Sbjct: 136 ----------------PVTVKTRLGWDAEHKIIVELAEQLQDCGIEALTIHGRTRAQMYT 179
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW I + ++N +H
Sbjct: 180 GEADWTLIGEV-----KNNPRMH------------------------------------- 197
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE--KKLFDI 601
P+ GNGD+ + + E + + +MIGR + +PWIF+E+K K ++
Sbjct: 198 ------IPIIGNGDVTTPQRAQECFDRY-GVDAIMIGRASFGRPWIFKEVKHYLKTGEEL 250
Query: 602 YAIVWKWR 609
+ +KW+
Sbjct: 251 PPLSFKWK 258
>gi|333999827|ref|YP_004532439.1| tRNA-dihydrouridine synthase [Treponema primitia ZAS-2]
gi|333739529|gb|AEF85019.1| tRNA-dihydrouridine synthase [Treponema primitia ZAS-2]
Length = 325
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 132/342 (38%), Gaps = 104/342 (30%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ G L+L+P+ + FR +C + GAD TC+EM + L + + L+ R E+E
Sbjct: 11 KLIVPGNLFLAPVAGYSDRAFRSVCIEQGADFTCTEMVSSEALTRDGVRTELLLPRAENE 70
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ +QL G NP V+ LL + VD+N GCP+ I K GSGS L++
Sbjct: 71 TRYAIQLFGANPDVMYSAALLLAPWRP-EAVDINCGCPVPKIIKTGSGSALMK------- 122
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
NP +L + I+++V+
Sbjct: 123 -----NPDILGR---------------------------------------IVEAVVRAS 138
Query: 434 NE-VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
E + +P+TVK R G + + GA+L+ LH RTR Q Y+ Q+DW I
Sbjct: 139 REALGGVPVTVKLRAGWDGASLNYRECARIAVEAGAALVGLHPRTRAQGYSGQSDWSLIA 198
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
A C P P+
Sbjct: 199 DLAA--------------------------------------------------CLPVPV 208
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
G+GD+ + ED L+++ + VM RGAL P++F +
Sbjct: 209 AGSGDLFTAEDAERMLRET-GCAAVMFARGALGNPFVFAAAR 249
>gi|325299590|ref|YP_004259507.1| nifR3 family TIM-barrel protein [Bacteroides salanitronis DSM
18170]
gi|324319143|gb|ADY37034.1| TIM-barrel protein, nifR3 family [Bacteroides salanitronis DSM
18170]
Length = 338
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR LCK++GAD+ +E + L++S + + +E +Q+
Sbjct: 13 VVLAPMEDVTDPAFRLLCKEFGADMVYTEFVSSDALIRSVDKTMMKLNISAAERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAARIV-EQARPDILDLNFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L I ++V+ + +P
Sbjct: 121 KML----------------------------------------EITRAVVNAVQ----IP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ +I + +D G +T+HGRTR Q YT +ADW I +
Sbjct: 137 VTVKTRLGWDENHKVIVELAEQLQDCGIEALTIHGRTRSQMYTGEADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ R P+ GNGDI +
Sbjct: 191 KNN------PRMR------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +MIGR + +PWIF+E+K
Sbjct: 209 PQRAKECFDRY-GVDSIMIGRASFGRPWIFKEVK 241
>gi|333993099|ref|YP_004525712.1| tRNA-dihydrouridine synthase B [Treponema azotonutricium ZAS-9]
gi|333735697|gb|AEF81646.1| tRNA-dihydrouridine synthase B [Treponema azotonutricium ZAS-9]
Length = 332
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 102/341 (29%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ G L+L+P+ + PFR +C + GAD+T +E+A + L++ + +AL++R E+E
Sbjct: 12 LSLSGNLFLAPVAGYTDRPFRSICVELGADLTYTELASSEALIRRGAKTFALLRRAENET 71
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQL G++P V+ LL E + + VD+N GCP+ + K G+GS L++
Sbjct: 72 RYAVQLFGSDPEVMYSAALLL-EPLHPEVVDINAGCPVPKVVKSGAGSALMR-------- 122
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+P LG +E + K
Sbjct: 123 ----DP--------------------AKLGRIVEGVAK------------------ASRE 140
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
++ P+TVK R+G + + + GA+L+ LH RTR Q Y+ +++W+++
Sbjct: 141 KLGGAPVTVKMRSGWDASSINYNECARTAVEAGAALVCLHARTRSQGYSGKSNWEHL--- 197
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A L SR P+ G
Sbjct: 198 ADLVSRLK-----------------------------------------------MPVAG 210
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED E + + + +M RGA P+IF+ +E
Sbjct: 211 SGDLYSPED-AERMLRETGCAALMFARGAQGNPFIFRLARE 250
>gi|451980533|ref|ZP_21928922.1| Transcription regulator homolog yacF [Nitrospina gracilis 3/211]
gi|451762269|emb|CCQ90156.1| Transcription regulator homolog yacF [Nitrospina gracilis 3/211]
Length = 351
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 106/331 (32%)
Query: 262 YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLC 321
+++P++ + +L +R L + GA + SE+ A L+ SS + +I+ HE
Sbjct: 29 WMAPMSGITDLCYRHLIDEMGAGVIISELVSAKGLVYSSERTAKMIRVHE---------- 78
Query: 322 GNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
NP L G+QL G +
Sbjct: 79 --NP------------------------------------------GTLVGIQLFGEDAD 94
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI 441
+ ++EQ F+D+NLGCP++ + K+G GS L++ L + + LP+
Sbjct: 95 DYVRVAPQVQEQGA-HFIDINLGCPVKKVVKKGCGSALMRDPEKLYVFLQHIRANIDLPL 153
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
TVK RTG + IH + + G + +HGRTR+Q Y+ QADW+ I R+
Sbjct: 154 TVKMRTGWSHEELTIHECVDAAKQAGCQWVAIHGRTRQQGYSGQADWELIAD----VKRN 209
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
+I P+ GNGDI S
Sbjct: 210 TDI----------------------------------------------PIIGNGDIRSA 223
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ + L++S + VMIGRGAL PWIF+E
Sbjct: 224 DRARQLLEES-GVDAVMIGRGALRDPWIFKE 253
>gi|323343751|ref|ZP_08083978.1| tRNA-dihydrouridine synthase B [Prevotella oralis ATCC 33269]
gi|323095570|gb|EFZ38144.1| tRNA-dihydrouridine synthase B [Prevotella oralis ATCC 33269]
Length = 346
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 105/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ ++
Sbjct: 33 LFLAPMEDVTDIGFRLLCKRFGAAMVYTEFISAE----------ALVRSIKA-------- 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G +
Sbjct: 75 ------TMSKLTISDEER------------PV-------------------GIQIYGRDV 97
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE D +D+N GCP++ + +G+G+G+L+ +L + + + P
Sbjct: 98 VSMVEAAKIVEEAHP-DVIDLNFGCPVKKVASKGAGAGMLRNIPLLLEITREVVKAVHTP 156
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 157 VTVKTRLGWDANNLIIADLAEQLQDCGIHALTIHGRTRSQMYTGKADWTLIGEVKR---- 212
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI S
Sbjct: 213 -NPRIH-------------------------------------------IPIIGNGDIAS 228
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ E+ + + VMIGR +PWIF+EI
Sbjct: 229 PSEAKEAFDRYGT-DAVMIGRATFGRPWIFREI 260
>gi|410726020|ref|ZP_11364280.1| putative TIM-barrel protein, nifR3 family [Clostridium sp.
Maddingley MBC34-26]
gi|410601452|gb|EKQ55963.1| putative TIM-barrel protein, nifR3 family [Clostridium sp.
Maddingley MBC34-26]
Length = 321
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 55/242 (22%)
Query: 356 YKQGSGSGLLQRAN---LFGVQLCGNNPYVLTK-CTQLLEEQMVVDFVDVNLGCPIEFIY 411
Y + LL+ A+ Q+ G P ++ C + L + + +D+N+GCP I
Sbjct: 49 YGSDNTQALLRTADEERPVAAQIFGREPEIMANICEEHLNGREDICIIDINMGCPAPKIV 108
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
K G GS L++ ++ ++ + +VSS P+TVK R G +DN F + + GA I
Sbjct: 109 KNGEGSALMKEPDLAYEIVKAIKKVSSKPVTVKFRKGFDEDNINAVEFAKRMEEAGADAI 168
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
+HGRTR+Q Y ADWD I+K + S
Sbjct: 169 AIHGRTRKQMYQGIADWDIIKKVKEGVS-------------------------------- 196
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
P+ GNGD+ S ED +K+ + G+MI RG+ PWIF+
Sbjct: 197 ------------------VPVIGNGDVFSPEDAIR-MKEITNCDGIMIARGSQGNPWIFK 237
Query: 592 EI 593
+I
Sbjct: 238 QI 239
>gi|283795849|ref|ZP_06345002.1| tRNA-dihydrouridine synthase [Clostridium sp. M62/1]
gi|291076480|gb|EFE13844.1| TIM-barrel protein, nifR3 family [Clostridium sp. M62/1]
gi|295091061|emb|CBK77168.1| tRNA-U20-dihydrouridine synthase [Clostridium cf. saccharolyticum
K10]
Length = 319
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/339 (24%), Positives = 137/339 (40%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LC++ G + C TE++ + AL+ ++ +
Sbjct: 8 VELDSPVALAPMAGVTDLPFRILCREQGCGLMC------TEMVSAK----ALLYKNRN-- 55
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
P + TK EE+ P+ VQ
Sbjct: 56 --------TKPLLETKP----EER------------PV-------------------AVQ 72
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++++ +LEE D +DVN+GCP+ I G GS L++ + +++ M
Sbjct: 73 LFGSDPEIMSEMALMLEEG-PYDIIDVNMGCPVPKIVNNGEGSALMKNPKLAGEILSAMT 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
P+TVK R G + ++ F GA+ + +HGRTREQ Y+ +ADWD I +
Sbjct: 132 RKLKKPVTVKFRKGFNDESVNAVEFAKMAEQSGAAAVAVHGRTREQFYSGKADWDIIRQV 191
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 192 KEAVS--------------------------------------------------IPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI + +D ++++ GVM+ RGA PWIF I
Sbjct: 202 NGDIFTPQDAGRMMEET-GCDGVMVARGAKGNPWIFSRI 239
>gi|182420030|ref|ZP_02951264.1| tRNA-dihydrouridine synthase B [Clostridium butyricum 5521]
gi|237669513|ref|ZP_04529493.1| tRNA-dihydrouridine synthase B [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182376067|gb|EDT73654.1| tRNA-dihydrouridine synthase B [Clostridium butyricum 5521]
gi|237654957|gb|EEP52517.1| tRNA-dihydrouridine synthase B [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 321
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/345 (23%), Positives = 133/345 (38%), Gaps = 113/345 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ ++ ++L+P+ V ++ FR LCK+ G + +EM A L S L++
Sbjct: 6 LTFENNVFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTKELLR------ 59
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ EE+ V VQ
Sbjct: 60 -------------------IAEEEKPV------------------------------AVQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMV----VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
+ G P ++ K ++EE + +D+N+GCP I K G GS L++ + ++
Sbjct: 71 IFGREPEIMAK---MVEEHFNHRDDICIIDINMGCPATKIVKNGEGSALMKEPELAYKIV 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ EVS+ P+TVK R G ++N F GA + +HGRTR+Q Y +ADWD
Sbjct: 128 RKIKEVSTKPVTVKFRKGFDEENINAVEFAKGMEQAGADAVAIHGRTRKQMYQGKADWDI 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I+ + S
Sbjct: 188 IKSVKENVS--------------------------------------------------I 197
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ GNGD+ S ED +K+ + G+MI RG+ PW+F++IK+
Sbjct: 198 PVIGNGDVFSPEDALR-MKELTNCDGIMIARGSQGNPWLFRQIKD 241
>gi|313206097|ref|YP_004045274.1| tRNA-u20-dihydrouridine synthase [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383485409|ref|YP_005394321.1| tRNA-u20-dihydrouridine synthase [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|386321916|ref|YP_006018078.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-GD]
gi|416109640|ref|ZP_11591571.1| tRNA dihydrouridine synthase B [Riemerella anatipestifer RA-YM]
gi|442314712|ref|YP_007356015.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-CH-2]
gi|312445413|gb|ADQ81768.1| tRNA-U20-dihydrouridine synthase [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|315023721|gb|EFT36724.1| tRNA dihydrouridine synthase B [Riemerella anatipestifer RA-YM]
gi|325336459|gb|ADZ12733.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-GD]
gi|380460094|gb|AFD55778.1| tRNA-u20-dihydrouridine synthase [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|441483635|gb|AGC40321.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-CH-2]
Length = 325
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA------IKSKKKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G +
Sbjct: 68 ------------------------------PI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMAMSAKIVE-TVQPDLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + ++ G +T+H RTR Q Y +ADW++I + Q
Sbjct: 138 VTVKTRLGWDTNSINIDEVAERLQEAGIKALTIHARTRAQMYKGEADWEHISRIKQ---- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ NI P++GNGDI S
Sbjct: 194 NPNI--------------------------------------------EIPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ + K + GVMIGR A+ PWIF E+K
Sbjct: 210 PQKALD-YKNKYACDGVMIGRAAIGYPWIFNEVK 242
>gi|357060850|ref|ZP_09121613.1| hypothetical protein HMPREF9332_01170 [Alloprevotella rava F0323]
gi|355375527|gb|EHG22812.1| hypothetical protein HMPREF9332_01170 [Alloprevotella rava F0323]
Length = 352
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 130/333 (39%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + FR LC + GA + SE + L++S + + +K + E +Q+
Sbjct: 13 LLLAPMEDVTDAGFRLLCHRMGAAMVYSEFVASDALVRSVKRSFEKLKISDDERPTAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P + + +++EE D +D+N GCP++ + +G+G+GLLQ N P
Sbjct: 73 YGKKPDAMAEAAKIVEEVAHPDVLDMNFGCPVKRVAGKGAGAGLLQ-----------NIP 121
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V +P
Sbjct: 122 LMLEITRR------VVDAV--------------------------------------KIP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T KTR G ++ II + + +D G +T+HGRTR Q Y ADW I + +
Sbjct: 138 VTAKTRLGWDSEHEIIVDLAEQLQDCGIQALTIHGRTRAQMYKGDADWSLIGEVKR---- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 194 -NPRMH-------------------------------------------IPIIGNGDICT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
E+ + + VM+GR +PWIF+E+
Sbjct: 210 GEEARRAFDDY-GVDAVMVGRATFGQPWIFKEM 241
>gi|225629894|ref|YP_002726685.1| NifR3 family protein [Wolbachia sp. wRi]
gi|225591875|gb|ACN94894.1| NifR3 family protein [Wolbachia sp. wRi]
Length = 320
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 131/332 (39%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + + L VQL
Sbjct: 14 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---LQKAKVDALTAVQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P V+ + + L E M +D+N GCP++ + +GS L++
Sbjct: 71 AGCEPDVMAEAAK-LNEDMGAKIIDINFGCPVKKVVNGYAGSALMRDEK----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E +V+ +N +P
Sbjct: 119 ----KAAEIIE------------------------------------AVVKAVN----MP 134
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 135 VTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV------ 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI +
Sbjct: 189 --------------------------KEQ------------------VKIPVIVNGDIKN 204
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D +LK+S + GVMIGRGA KPW+ +
Sbjct: 205 LNDIQNALKESGA-DGVMIGRGAYGKPWLINQ 235
>gi|313885908|ref|ZP_07819648.1| TIM-barrel protein, nifR3 family [Porphyromonas asaccharolytica
PR426713P-I]
gi|312924663|gb|EFR35432.1| TIM-barrel protein, nifR3 family [Porphyromonas asaccharolytica
PR426713P-I]
Length = 329
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 131/335 (39%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK++GA + +E A L++ P ++ +E +Q+
Sbjct: 13 LLLAPMEDVSDAPFRLLCKQFGASLVYTEFISADALVRYVPSTMRKMRIDPAERPVAIQI 72
Query: 321 CGNNPYVLTKC-TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G + V T C + Q+ D +D+N GCP++ + +G+GSG+L+ +
Sbjct: 73 YGRD--VETMCEAARIACQLEPDLLDLNFGCPVKRVAGKGAGSGMLR------------D 118
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +L + T + +S
Sbjct: 119 PELLLEIT-------------------------------------------AAVVAAASC 135
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G D+ II P+ + G + +T+HGRTR Y ADW
Sbjct: 136 PVTVKTRLGWDHDSLIITELAPRLQACGIAALTIHGRTRSDMYKGSADW----------- 184
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
TL G R + P+ GNGDI
Sbjct: 185 ---------------------TLIGEVRSNPEIQ----------------IPIIGNGDIT 207
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E+ + + GVM+GR A+ +PWIF E++
Sbjct: 208 TGEEVRHAFDTY-GVDGVMVGRAAIGQPWIFGEMR 241
>gi|268315976|ref|YP_003289695.1| nifR3 family TIM-barrel protein [Rhodothermus marinus DSM 4252]
gi|262333510|gb|ACY47307.1| TIM-barrel protein, nifR3 family [Rhodothermus marinus DSM 4252]
Length = 358
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 106/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + PFR LCK++GAD+ +E + L+ HESED
Sbjct: 13 LFLAPMEDVSDPPFRLLCKRYGADMVFTEFISSGGLV------------HESEDA----- 55
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K + +E+ V G+Q+ G
Sbjct: 56 --------VKKLDIYDEERPV------------------------------GIQIFGGEL 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++++ Q+ D +D+N GCP+ + + +G+G+L+ N ++++ + EV++ P
Sbjct: 78 EQVREAARIVD-QIGPDVIDINFGCPVRKVVCKDAGAGVLRDLNKMRALTEAVIEVATRP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I D G +T+H RTR Q Y A W+++ + +L
Sbjct: 137 VTVKTRLGWDDRSIRILEVARMLEDCGVQALTVHARTRAQMYKGSARWEWLRRLKEL--- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
G S+ P+ GNGD L+
Sbjct: 194 ---------------GLSI-------------------------------PIIGNGDALT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + GVMIGRGA+ PWIF++ K
Sbjct: 208 PEKVKQMFDET-GVDGVMIGRGAIGNPWIFRDAK 240
>gi|374386519|ref|ZP_09644019.1| nifR3 family putative TIM-barrel protein [Odoribacter laneus YIT
12061]
gi|373224448|gb|EHP46788.1| nifR3 family putative TIM-barrel protein [Odoribacter laneus YIT
12061]
Length = 329
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V N PFR+ CK++GAD SE A L++S + + ESE +Q+
Sbjct: 13 LVLAPMEDVTNPPFRKFCKEFGADWLYSEFVSADALVRSVHKSLKKLTIEESERPVTIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +T+ +++EE + DF+D+N GCP++ + ++G+G+GLL+ + P
Sbjct: 73 YGRYIDSMTEAAKIVEE-VQPDFIDLNFGCPVKRVAQKGAGAGLLK-----------DIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ ++++ V LG E I
Sbjct: 121 LMIEMAERIVKAVKVPVTAKTRLGWDCEHI------------------------------ 150
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
II + + +D G + +HGRTR Q Y +ADW+ I +
Sbjct: 151 --------------IIEDIAERLQDVGIQALAIHGRTRSQMYAGEADWEPIGRV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGDI S
Sbjct: 191 KNN------PRIQ------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E+ K + VMIGRGA+ +PWIF++IK
Sbjct: 209 PQKAKEAFDKY-GVDAVMIGRGAIGRPWIFKQIK 241
>gi|395225002|ref|ZP_10403534.1| tRNA-dihydrouridine synthase [Thiovulum sp. ES]
gi|394446835|gb|EJF07646.1| tRNA-dihydrouridine synthase [Thiovulum sp. ES]
Length = 309
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/324 (25%), Positives = 131/324 (40%), Gaps = 107/324 (33%)
Query: 271 NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330
+LPFRR+ KK+G D+T SEM + L+ S + ++++ E+E+ + VQ+ G++ ++ K
Sbjct: 21 DLPFRRVVKKFGVDLTVSEMISSNALVYGSKKSLKMVEKSENENPYSVQIAGSDFEIVRK 80
Query: 331 CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
+ L + +D +D+N GCP+ + K GSGSGLL+ + L K T+++
Sbjct: 81 AVEYLNGRDGIDIIDLNSGCPVPKVVKGGSGSGLLKDLDK------------LEKMTRII 128
Query: 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH 450
+E T + +S VK R G
Sbjct: 129 KE--------------------------------------TSSKKYTS----VKVRIGF- 145
Query: 451 KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMP 510
D+ + GA IT+HGRTR + + D+ E AQ+ S
Sbjct: 146 -DSKYPVEIGKAVENGGADFITVHGRTRSGGFKSEVDY---EAIAQIKS----------- 190
Query: 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKK 570
P+ NGDI S + E LK
Sbjct: 191 ------------------------------------AVSIPVVANGDITSVQKSDEVLKI 214
Query: 571 SPSISGVMIGRGALIKPWIFQEIK 594
+ + G+MIGRGA+ PWIF +I+
Sbjct: 215 TNA-DGIMIGRGAVGNPWIFHQIR 237
>gi|302843625|ref|XP_002953354.1| hypothetical protein VOLCADRAFT_105870 [Volvox carteri f.
nagariensis]
gi|300261451|gb|EFJ45664.1| hypothetical protein VOLCADRAFT_105870 [Volvox carteri f.
nagariensis]
Length = 307
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 106/228 (46%), Gaps = 52/228 (22%)
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
+FG Q+ ++L +E F+D+N GCPI ++G GS +L++ L +
Sbjct: 1 MFGFQVACKTIADGIAASKLAKEAGA-QFLDINCGCPIHEATRRGMGSAMLRKPRALAKM 59
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ + S LP+TVK R G D I + + +F
Sbjct: 60 VAGIAAESELPVTVKVRLG-ENDKKINVDSVVRF-------------------------- 92
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
+E+ GA+ +T+HGRT EQRY K ADW + + A+ S
Sbjct: 93 -LERA---------------------GAAAVTVHGRTAEQRYKKAADWGRVGELAR-SSS 129
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P+ GNGDIL++ + L++S + VM GRGALIKPW+F E KE +
Sbjct: 130 VPIIGNGDILTHYEARARLEES-GCAAVMAGRGALIKPWLFLEFKEGR 176
>gi|42519943|ref|NP_965858.1| NifR3 family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409680|gb|AAS13792.1| NifR3 family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 320
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 131/332 (39%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + + L VQL
Sbjct: 14 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---LQKAKVDALTAVQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P V+ + + L E M +D+N GCP++ + +GS L++
Sbjct: 71 AGCEPDVMAEAAK-LNEDMGAKIIDINFGCPVKKVVNGYAGSALMRDEK----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E +V+ +N +P
Sbjct: 119 ----KAAEIIE------------------------------------AVVKAVN----MP 134
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 135 VTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV------ 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI +
Sbjct: 189 --------------------------KEQ------------------VKIPVIVNGDIKN 204
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D +LK+S + GVMIGRGA KPW+ +
Sbjct: 205 LNDIQNALKESGA-DGVMIGRGAYGKPWLINQ 235
>gi|329956495|ref|ZP_08297092.1| TIM-barrel protein, nifR3 family [Bacteroides clarus YIT 12056]
gi|328524392|gb|EGF51462.1| TIM-barrel protein, nifR3 family [Bacteroides clarus YIT 12056]
Length = 325
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK +GAD+ +E + L++S + + + E +Q+
Sbjct: 13 VLLAPMEDVTDPAFRLMCKGFGADMVYTEFVSSDALIRSVSKTEQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++E Q D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTDTMVEAARIVE-QARPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + + + +P
Sbjct: 121 KML--------------------------------------------EITRAVADAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDAGNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPVIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +MIGR + +PWIF+E+K
Sbjct: 209 PQRAKECFDRY-GVDAIMIGRASFGRPWIFKEVK 241
>gi|296272247|ref|YP_003654878.1| dihydrouridine synthase [Arcobacter nitrofigilis DSM 7299]
gi|296096422|gb|ADG92372.1| dihydrouridine synthase DuS [Arcobacter nitrofigilis DSM 7299]
Length = 316
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 135/344 (39%), Gaps = 110/344 (31%)
Query: 253 KKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
KK+D+ Q + L+PL +LPFR + KK+GAD+T SEM + L+ +S + + +I++
Sbjct: 2 KKLDFSQPLMVLAPLAGYTDLPFRAVVKKFGADLTISEMISSNALVYNSQKTFKMIEKSP 61
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
SED PY
Sbjct: 62 SED----------PYF-------------------------------------------- 67
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ GN ++ ++L + +D +D+N GCP ++ GSGS LL L+ ++
Sbjct: 68 -VQIAGNKAELVRDAVEILNDMEGIDGIDLNCGCPAPKVFNHGSGSNLLGDLKKLEEILG 126
Query: 432 CMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + + L + K R G+++ I + G I++HGRTR +Y D+D
Sbjct: 127 TVKKYNKKLYTSAKVRIGVNE--KIPVDIAKAVESCGVDFISVHGRTRAGKYKAPVDYDA 184
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I+ + S
Sbjct: 185 IKAIKEAVS--------------------------------------------------I 194
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ NGDI Y E L + + G+MIGRGA+ KPWIF ++K
Sbjct: 195 PVIANGDIKDYAKAKEVLAHTKA-DGLMIGRGAIGKPWIFYQLK 237
>gi|429760345|ref|ZP_19292825.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
gi|429177679|gb|EKY18987.1| TIM-barrel protein, nifR3 family [Veillonella atypica KON]
Length = 330
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 130/334 (38%), Gaps = 107/334 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
QGK L+P+ V ++ +R L K+ GA + C+EM A + + + L++ E
Sbjct: 13 QGKAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAVEHPVS 72
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
+Q+ G+NP + +++ + A D VD+N+GCP++ + G GS L++ +L
Sbjct: 73 MQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVSSGDGSALMKTPDL------- 124
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
A + ++ + ++
Sbjct: 125 --------------------------------------------AARVAEAAVKAVD--- 137
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R G D+ + +F + G + + +HGRTREQ Y +ADW YI+
Sbjct: 138 -VPVTVKMRIGWDDDHINVVDFAKRIESTGVAAVAVHGRTREQMYMGRADWSYIKAVKDS 196
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P+ GNGD
Sbjct: 197 LS--------------------------------------------------IPVIGNGD 206
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
+ + ED ++++ VMIGRGA PWIF+
Sbjct: 207 VWTPEDALRMMQET-GCDAVMIGRGAQGNPWIFE 239
>gi|260910934|ref|ZP_05917575.1| dihydrouridine synthase [Prevotella sp. oral taxon 472 str. F0295]
gi|260634925|gb|EEX52974.1| dihydrouridine synthase [Prevotella sp. oral taxon 472 str. F0295]
Length = 333
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 141/335 (42%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRLLCKRFGAAMVYTEFVSAE----------ALVRSVKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G +
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + P
Sbjct: 78 ESMVEAARIVE-QSHPDVIDINFGCPVKRVAGKGAGAGMLRNVPLMLEITREVVRAVRTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + + II + +D G + +T+HGRTR Q YT +ADW YI + +
Sbjct: 137 VTVKTRLGWNCEEIIIPTLAEQLQDCGIAALTIHGRTRSQMYTGEADWRYIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI +
Sbjct: 192 ANPRIH-------------------------------------------IPIIGNGDICT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E+ + + VM+GR +PW+F+E+K+
Sbjct: 209 PQQAKEAFDRY-GVDAVMVGRATFGRPWVFKEMKD 242
>gi|298385818|ref|ZP_06995375.1| hypothetical protein HMPREF9007_02527 [Bacteroides sp. 1_1_14]
gi|298261046|gb|EFI03913.1| hypothetical protein HMPREF9007_02527 [Bacteroides sp. 1_1_14]
Length = 330
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------SISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNQRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|359684327|ref|ZP_09254328.1| tRNA-dihydrouridine synthase [Leptospira santarosai str.
2000030832]
Length = 318
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 142/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRFDPKER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGFADWDAIGEI-KTRRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|395493244|ref|ZP_10424823.1| nifR3 family TIM-barrel protein [Sphingomonas sp. PAMC 26617]
Length = 326
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 132/335 (39%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+T V ++PFR L +++G+ + +EM + ++ + Q H ED +QL
Sbjct: 12 VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSIQKAAWHPIEDPVSMQL 71
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P+ + + +L E++ A VD+N+GCP+ + +GS L++ +L + G
Sbjct: 72 VGCTPFEMGEAAKLSEDRGAA-IVDINMGCPVRKVTNGDAGSALMRDLDLAAAIIKG--- 127
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
VVD V S+P
Sbjct: 128 --------------VVDAV--------------------------------------SVP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R G D +D G L+T+HGRTR Q Y ADW +I + +
Sbjct: 136 VTLKMRMGWDLDRLNAPELAKIAQDLGCKLVTVHGRTRNQMYKGNADWAFIRRV-----K 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D I P+ NGDI S
Sbjct: 191 DAVTI---------------------------------------------PVIANGDICS 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
ED +L++S + +GVMIGRGA +PW+ ++ E
Sbjct: 206 IEDAETALEQSGA-NGVMIGRGAYGRPWLLGQVME 239
>gi|403251624|ref|ZP_10917956.1| tRNA-dihydrouridine synthase [actinobacterium SCGC AAA027-L06]
gi|402915075|gb|EJX36066.1| tRNA-dihydrouridine synthase [actinobacterium SCGC AAA027-L06]
Length = 388
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 133/336 (39%), Gaps = 106/336 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC++ GA + SEM A ALI+R E
Sbjct: 28 VVLAPMAGITNAAFRRLCREQGAGLFVSEMVTAR----------ALIERREET------- 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ L K G G R+ +QL +P
Sbjct: 71 -----FRLIK-----------------------------PGVGESPRS----IQLYAVDP 92
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-- 438
VL K LL + + D +D+N GCP+ + ++G G+ L + + +++ + +S
Sbjct: 93 TVLAKAVDLLGSEDLADHIDLNFGCPVPKVTRRGGGAALPYKRRLFSAIVEAAVKTASKY 152
Query: 439 -LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R GI D++ D G + + LH RT Q Y +ADW+ I
Sbjct: 153 GIPVTVKMRVGIDSDHHTFLESAKSAADLGVTWVALHARTAAQLYEGRADWNKIT----- 207
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
D +E + + P+ GNGD
Sbjct: 208 ----------------------------------------DLVEHLSN--TSVPVLGNGD 225
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED + + ++ +GV++GRG L +PW+F ++
Sbjct: 226 IWSGEDAVKMISQT-GCAGVVVGRGCLGRPWLFADL 260
>gi|256424776|ref|YP_003125429.1| hypothetical protein Cpin_5809 [Chitinophaga pinensis DSM 2588]
gi|256039684|gb|ACU63228.1| TIM-barrel protein, nifR3 family [Chitinophaga pinensis DSM 2588]
Length = 345
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +C++ GAD+ + TE + S L+K E
Sbjct: 14 LLLAPMEDVSDPPFRVVCRENGADL------LYTEFISSE----GLVKDTE--------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
KC + L + GVQ+ G +
Sbjct: 55 ---------KCRRKL---------------------------AIFDEERPAGVQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
L+ ++++ D +D+N GCPI+ I +G+GSG+L+ +++ + + + LP
Sbjct: 79 GKLSMAARIVDMTQP-DLLDINFGCPIKGIVSKGAGSGVLKDIDLMVRLTAACVKSTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +D I + +D G + +HGRTR Q Y +A W+ I K +
Sbjct: 138 VTVKTRLGWDEDTQNIEEVAERLQDVGIKALAIHGRTRTQMYKGEASWELIAKV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P++GNGDI S
Sbjct: 193 NNPRIH-------------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E K + G+MIGR A+ PWIF+E+K
Sbjct: 210 PQKALE-YKNRYGVDGIMIGRAAIGYPWIFREVK 242
>gi|29348482|ref|NP_811985.1| dehydrogenase [Bacteroides thetaiotaomicron VPI-5482]
gi|29340386|gb|AAO78179.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Bacteroides thetaiotaomicron VPI-5482]
Length = 330
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------SISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNQRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|33861565|ref|NP_893126.1| nitrogen regulation protein NifR3 family protein [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33634142|emb|CAE19468.1| putative nitrogen regulation protein NifR3 family homolog
[Prochlorococcus marinus subsp. pastoris str. CCMP1986]
Length = 340
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/352 (25%), Positives = 143/352 (40%), Gaps = 108/352 (30%)
Query: 242 TDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP 301
+ IIK++ +I K+ LSPL V + FR+L +KW E + TE++ ++
Sbjct: 7 SSIIKLRGKGVSRI-INSKVMLSPLAGVTDKIFRKLVRKW-----APESLLFTEMINATS 60
Query: 302 QEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ +G Q K QL E+ PI
Sbjct: 61 LKHG----------YGTQ----------KIKQLELEK-----------GPI--------- 80
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
GVQ+ N P+ +++ +L E+ +D+N+GCP++ I ++G GS L+
Sbjct: 81 ----------GVQIFDNRPFAVSEAAKLAEDSGAF-LIDINMGCPVKKISRKGGGSALIN 129
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+ ++ ++ +P+TVKTR G I F+ +D GA +ITLHGRTR++
Sbjct: 130 DRLLAIELVKRVSNAVKVPVTVKTRLGWENKEENIEEFLLSLQDAGAEMITLHGRTRKEG 189
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
++ +ADW+ I K +L
Sbjct: 190 FSGKADWEMIGKIKELLE------------------------------------------ 207
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGDI + +D LKK+ + G+MIGRG L PW EI
Sbjct: 208 --------IPVIANGDIKNPKDAYNCLKKTNA-DGLMIGRGILGSPWKIGEI 250
>gi|294790522|ref|ZP_06755680.1| putative tRNA-dihydrouridine synthase [Scardovia inopinata F0304]
gi|294458419|gb|EFG26772.1| putative tRNA-dihydrouridine synthase [Scardovia inopinata F0304]
Length = 398
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 128/333 (38%), Gaps = 104/333 (31%)
Query: 263 LSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLC 321
LSP+ V N PFR LC+ +G D + +EM A L+ +P+ + L + SE +QL
Sbjct: 35 LSPMAGVTNWPFRVLCEDYGPDGLYVAEMITARALVAGNPKAFRLTRFAPSEKFRSLQLY 94
Query: 322 GNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
G NP ++ + ++ + D +D+N GCP+ + ++G GS L + +L
Sbjct: 95 GVNPAIVQQAAAMIVDGNLADHLDLNFGCPVPKVTRRGGGSALPWKTDLL---------- 144
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI 441
+I+ V+ + + + +P+
Sbjct: 145 -----------------------------------------QDIIHRVVA-VCQPAGIPV 162
Query: 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
T K RTGI D++ + G + +TLH RT Q Y +DW I + QL S
Sbjct: 163 TAKIRTGIDDDHSTMREAATIIEGEGCACVTLHARTTAQYYGGHSDWSKIAELKQLVS-- 220
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
P+ GNGDI S
Sbjct: 221 ------------------------------------------------IPVIGNGDIWSA 232
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED ++++ GV +GRG +PW+F ++K
Sbjct: 233 EDALAMVEQT-GCDGVAVGRGCQGRPWLFADLK 264
>gi|160884735|ref|ZP_02065738.1| hypothetical protein BACOVA_02724 [Bacteroides ovatus ATCC 8483]
gi|156109770|gb|EDO11515.1| TIM-barrel protein, nifR3 family [Bacteroides ovatus ATCC 8483]
Length = 331
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+EIK
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEIK 241
>gi|196228193|ref|ZP_03127060.1| TIM-barrel protein, nifR3 family [Chthoniobacter flavus Ellin428]
gi|196227596|gb|EDY22099.1| TIM-barrel protein, nifR3 family [Chthoniobacter flavus Ellin428]
Length = 328
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 131/338 (38%), Gaps = 108/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
Q LYL+P+ + + FR+LCK+ GAD+ +E A + +R+E
Sbjct: 8 QFPLYLAPMAGITDTIFRQLCKEQGADVMVTEFVSAE----------GIFRRNE------ 51
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
+ LE +EFI + GVQL G
Sbjct: 52 ---------------RTLEY--------------LEFIEAE----------RPLGVQLFG 72
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-TCMNEV 436
+P L + +++ E DF+D+N GCP+ + + GS LL+ +L+ V +
Sbjct: 73 GDPEHLGEAARMVGEWKQPDFIDLNFGCPVNKVVSKNGGSSLLRDCPLLERVARAVVKGA 132
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
+ LP+T K R G + D G I +HGRT+EQ Y+ +A+WD I + A
Sbjct: 133 APLPVTAKIRIGWCEQTINATTTARILEDCGVQAIAVHGRTKEQGYSGRANWDVIAEVAA 192
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
S P+ GNG
Sbjct: 193 ATS--------------------------------------------------LPVIGNG 202
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
DI S D ++K + G+MIGR A+ PWIF+EIK
Sbjct: 203 DIASAADAVGAMKC--GVRGLMIGRAAMSTPWIFREIK 238
>gi|404253572|ref|ZP_10957540.1| tRNA-dihydrouridine synthase [Sphingomonas sp. PAMC 26621]
Length = 334
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 129/335 (38%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+T V ++PFR L +++G+ + +EM + ++ + Q H ED +QL
Sbjct: 20 VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSIQKAAWHPIEDPVSMQL 79
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P+ + + +L E++ A VD+N+GCP+ + +GS L++ +L + G
Sbjct: 80 VGCTPFEMGEAAKLSEDRGAA-IVDINMGCPVRKVTNGDAGSALMRDLDLAAAIIKG--- 135
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
VVD V S+P
Sbjct: 136 --------------VVDAV--------------------------------------SVP 143
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R G D +D G L+T+HGRTR Q Y ADW +I + + +
Sbjct: 144 VTLKMRMGWDLDRLNAPELAKIAQDLGCKLVTVHGRTRNQMYKGNADWAFIRQVKEAVT- 202
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ NGDI S
Sbjct: 203 -------------------------------------------------IPVIANGDICS 213
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
ED +L++S GVMIGRGA +PW+ ++ E
Sbjct: 214 IEDAETALEQS-GADGVMIGRGAYGRPWLLGQVME 247
>gi|423316506|ref|ZP_17294411.1| hypothetical protein HMPREF9699_00982 [Bergeyella zoohelcum ATCC
43767]
gi|405583556|gb|EKB57496.1| hypothetical protein HMPREF9699_00982 [Bergeyella zoohelcum ATCC
43767]
Length = 329
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR+LCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRKLCKMHGADLMYSEFISSEGLIRDA------IKSRKKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G +
Sbjct: 68 ------------------------------PI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++++ + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMAMSAKIVD-TVQPDLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTDLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + ++ G +T+H RTR Q Y +ADW++I + Q
Sbjct: 138 VTVKTRLGWDTASINIDEVAERLQETGIKALTIHARTRAQMYKGEADWEHISRIKQ---- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ NI P++GNGDI S
Sbjct: 194 NPNI--------------------------------------------EIPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E +K + G+MIGR A+ PWIF EIK+
Sbjct: 210 PQKAQEYREKY-ACDGIMIGRAAIGYPWIFNEIKQ 243
>gi|302672113|ref|YP_003832073.1| tRNA dihydrouridine synthase A DusA2 [Butyrivibrio proteoclasticus
B316]
gi|302396586|gb|ADL35491.1| tRNA dihydrouridine synthase A DusA2 [Butyrivibrio proteoclasticus
B316]
Length = 325
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 132/334 (39%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L P+ V +LPFR LC++ GA + C EM A + + L++ HE E +QL
Sbjct: 18 IILGPMAGVSDLPFRLLCREMGAGLVCMEMVSAKAITYKNKNTNMLMEIHEDEHPVSLQL 77
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ + ++++++ D +DVN+GCP+ + G GS L++ NP
Sbjct: 78 FGSEPEIMQQAVEMIKDR-PYDILDVNMGCPVPKVVGNGEGSALMK------------NP 124
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ K ++ + EVS P
Sbjct: 125 ELIEK-------------------------------------------IVKALTEVSDRP 141
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + + ++ GA+ + +HGRTREQ Y+ +ADW I
Sbjct: 142 VTVKIRRGFTEASVNAVECALAAQEGGAAAVAVHGRTREQYYSGRADWTII--------- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
R K+A P+ GNGD++
Sbjct: 193 -----------------------------RQVKEA------------LKIPVIGNGDVVD 211
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
T+ + + GVM+ R A P++F+EIK
Sbjct: 212 GPS-TKRMFEETGCDGVMVARAAQGNPFLFREIK 244
>gi|345881324|ref|ZP_08832846.1| hypothetical protein HMPREF9431_01510 [Prevotella oulorum F0390]
gi|343919989|gb|EGV30729.1| hypothetical protein HMPREF9431_01510 [Prevotella oulorum F0390]
Length = 333
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + V TE + + A+I+ +S
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRYGAAM------VYTEFVSAD----AIIRNIQS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L K EE+ P+ GVQ+ G +
Sbjct: 55 ------TLNKMKINAEER------------PV-------------------GVQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE + D +D+N GCP++ + +G+GSG+L+ +L + + + P
Sbjct: 78 DSMVEAARVVEE-IHPDVIDLNFGCPVKKVAGKGAGSGMLKNIPLLLEITKRVVQAVKTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G +T+HGRTR Q YT +ADW I + Q
Sbjct: 137 VTVKTRLGWDAENLVIETLCEQLQDCGIQALTIHGRTRAQMYTGKADWTLIGRVKQ---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI S
Sbjct: 193 -NPRIH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D + + + VM+GR PWIF E+++
Sbjct: 209 GADAVRAFQDY-GVDAVMVGRATFGCPWIFSEMRD 242
>gi|406878803|gb|EKD27610.1| hypothetical protein ACD_79C00655G0003 [uncultured bacterium]
Length = 316
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 136/341 (39%), Gaps = 108/341 (31%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K ++ + L+P+ V +L FR + KK GADI +E A A AL+++ +
Sbjct: 5 KYKFKQPIALAPMEDVTDLAFRTISKKHGADILYTEFASAE----------ALVRKAKKT 54
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ ++LEE+ + +
Sbjct: 55 ---------------VEKVRVLEEERPI------------------------------AI 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ G+ + + +++EE + DF+D+N GC ++ + +G G+GLL+ +SVI+
Sbjct: 70 QIFGSKEDAIHRSIEVVEE-LKPDFIDINCGCWVKKVVNRGEGAGLLRDLEKFKSVISTA 128
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+ + LP+TVKTR G DN +I D GA +T+H RTREQ Y ADW ++EK
Sbjct: 129 VKATKLPVTVKTRLGWDADNIVILKAAKIVEDCGAKALTVHCRTREQGYKGLADWSWLEK 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S PL
Sbjct: 189 IKNEIS--------------------------------------------------IPLI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGDI D + + GVMIGRGA+ PWIF + K
Sbjct: 199 GNGDIKQPADAVKMF--NSGCDGVMIGRGAIGNPWIFSQCK 237
>gi|423291225|ref|ZP_17270073.1| hypothetical protein HMPREF1069_05116 [Bacteroides ovatus
CL02T12C04]
gi|392663836|gb|EIY57381.1| hypothetical protein HMPREF1069_05116 [Bacteroides ovatus
CL02T12C04]
Length = 331
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + + VMIGR + +PWIF+E+K
Sbjct: 209 PERSKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|407474805|ref|YP_006789205.1| tRNA-dihydrouridine synthase B [Clostridium acidurici 9a]
gi|407051313|gb|AFS79358.1| tRNA-dihydrouridine synthase B [Clostridium acidurici 9a]
Length = 322
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 135/341 (39%), Gaps = 113/341 (33%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ ++L+P+ V +L FR +CK+ + +EM + L ED
Sbjct: 6 IEVDNNVFLAPMAGVTDLAFRLMCKEMNVGLLYTEMVSSKALF--------------FED 51
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
Q E M +D QR +Q
Sbjct: 52 ------------------QKTHEIMKID-----------------------QREKPVALQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQM--VVDF--VDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
+ G++P V+ + T EE++ + DF VD+N+GCP I K G GS L+ ++++ ++
Sbjct: 71 IFGSDPKVMARIT---EEKLNKIDDFIIVDINMGCPAPKIVKNGDGSALMNNPDLVKEIV 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ +VS+ P+TVK R G +++ D GAS IT+HGRTREQ Y+ ADW
Sbjct: 128 REVVKVSNKPVTVKIRKGWDENHQNAVEIARIIEDAGASGITVHGRTREQYYSGLADWKM 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + + S
Sbjct: 188 IRRVKESVS--------------------------------------------------I 197
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
P+ GNGDI ED +K++ + VMIGRGA PWIF+
Sbjct: 198 PVTGNGDIFEPEDALRMMKET-NCDAVMIGRGARGNPWIFK 237
>gi|288925390|ref|ZP_06419324.1| TIM-barrel protein, putative, NifR3 family [Prevotella buccae D17]
gi|288337861|gb|EFC76213.1| TIM-barrel protein, putative, NifR3 family [Prevotella buccae D17]
Length = 321
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAE----------ALVRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRTV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + + +P
Sbjct: 78 EDMVEAARIVE-QARPDVIDINFGCPVKKVAGKGAGAGMLKNVPLMLDITREVVKAVKVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDIGS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ E+ + + VMIGR +PW+F E
Sbjct: 209 IAEAHEAFDRY-GVDAVMIGRATFGQPWLFSE 239
>gi|402307481|ref|ZP_10826504.1| TIM-barrel protein, nifR3 family [Prevotella sp. MSX73]
gi|400378531|gb|EJP31386.1| TIM-barrel protein, nifR3 family [Prevotella sp. MSX73]
Length = 321
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAE----------ALVRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRTV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + + +P
Sbjct: 78 EDMVEAARIVE-QARPDVIDINFGCPVKKVAGKGAGAGMLKNVPLMLDITREVVKAVKVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDIGS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ E+ + + VMIGR +PW+F E
Sbjct: 209 IAEVHEAFDRY-GVDAVMIGRATFGQPWLFSE 239
>gi|375254877|ref|YP_005014044.1| nifR3 family TIM-barrel protein [Tannerella forsythia ATCC 43037]
gi|363407716|gb|AEW21402.1| TIM-barrel protein, nifR3 family [Tannerella forsythia ATCC 43037]
Length = 350
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++ FR +CK++GAD+ V TE + S ALI++
Sbjct: 29 VMLAPMEDVTDISFRLMCKQFGADM------VYTEFVSSD----ALIRQ----------- 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K EE++ V +Q+ G
Sbjct: 68 -------VSKT----EEKLKVS-----------------------DEERPVAIQIYGREV 93
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + Q+ E D +D+N GCP++ + +G+G+G+L+ ++ + + + ++P
Sbjct: 94 MPMVEAAQICEAAHP-DMLDINFGCPVKKVANKGAGAGMLRNLPLMLEITRAVVKAVNIP 152
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + +D G + +T+HGRTR Q YT +ADW I +
Sbjct: 153 VTVKTRLGWDADHRIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGAV-----K 207
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI S
Sbjct: 208 ENPRMH-------------------------------------------IPIIGNGDITS 224
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E+ + + G+MIGR ++ +PWIF+E+K
Sbjct: 225 AKRCKEAF-ECYGVDGIMIGRASIGQPWIFREVK 257
>gi|315606822|ref|ZP_07881831.1| tRNA-dihydrouridine synthase B [Prevotella buccae ATCC 33574]
gi|315251487|gb|EFU31467.1| tRNA-dihydrouridine synthase B [Prevotella buccae ATCC 33574]
Length = 321
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRMLCKRFGAAMVYTEFVSAE----------ALVRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRTV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + + +P
Sbjct: 78 EDMVEAARIVE-QARPDVIDINFGCPVKKVAGKGAGAGMLKNVPLMLDITREVVKAVKVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDSNNLIISELAEQLQDCGIQALTIHGRTRSQMYTGEADWSLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI S
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDIGS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
+ E+ + + VMIGR +PW+F E
Sbjct: 209 IAEAHEAFDRY-GVDAVMIGRATFGQPWLFSE 239
>gi|300770292|ref|ZP_07080171.1| tRNA-dihydrouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
gi|300762768|gb|EFK59585.1| tRNA-dihydrouridine synthase B [Sphingobacterium spiritivorum ATCC
33861]
Length = 331
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ G D+ +E + L++ + + + E E G+Q+
Sbjct: 16 LLLAPMEDVSDPPFRYVCKQNGVDMMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQI 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG-NN 379
G IE + +Q S ++C N
Sbjct: 76 ---------------------------FGSEIEHM-RQSS-------------EICSLAN 94
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P D +D+N GCP++ + +G+GS LLQ + + ++ + E + L
Sbjct: 95 P----------------DLIDINYGCPVKNVVCKGAGSSLLQDVDKMVAMTKAVVEATHL 138
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G + ++ + +D G +++HGRTR Q Y QADW I +
Sbjct: 139 PVTVKTRLGWDDNTKNVYEVAERLQDVGIKALSIHGRTRAQMYKGQADWSMIRDVKR--- 195
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ + P++GNGDI
Sbjct: 196 ---------NPRIK------------------------------------IPIFGNGDID 210
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
S E + ++ + G+MIGR ++ PWIF+EIK
Sbjct: 211 SVEK-AAAWRQEFEVDGIMIGRASIGYPWIFREIK 244
>gi|89889708|ref|ZP_01201219.1| tRNA-dihydrouridine synthase [Flavobacteria bacterium BBFL7]
gi|89517981|gb|EAS20637.1| tRNA-dihydrouridine synthase [Flavobacteria bacterium BBFL7]
Length = 330
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 136/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKENGADV------VYTEFISSE----GLIRD----------- 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K T L+ + + G+Q+ G N
Sbjct: 53 -------AAKSTMKLD---------------------------IYEAERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E + D +D+N GCP++ + +G+G+G+L+ +++ S+ M + + LP
Sbjct: 79 DSMLQSVEIVE-RTKPDIIDINFGCPVKKVVSRGAGAGILKDIDLMVSLTAAMVKHTDLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I++HGRTR Q Y ADW I +
Sbjct: 138 ITVKTRLGWDDDSIKIVEVAERLQDVGIKAISIHGRTRAQMYKGNADWKPIADV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVNT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PERAVE-MRDEYGLDGAMIGRASIGYPWFFREVKH 243
>gi|407452110|ref|YP_006723835.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-CH-1]
gi|403313094|gb|AFR35935.1| tRNA-dihydrouridine synthase [Riemerella anatipestifer RA-CH-1]
Length = 325
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + IK + D+F +
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDA------IKSKKKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 68 ------------------------------PV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + + LP
Sbjct: 79 EAMAMSAKIVE-TVQPDLVDINFGCPVKKVVCKGAGAGVLKDIDLMVRLTKAVVNSTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I + ++ G +T+H RTR Q Y +ADW++I + Q
Sbjct: 138 VTVKTRLGWDTSSINIDEVAERLQEAGIKALTIHARTRAQMYKGEADWEHISRIKQ---- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ NI P++GNGDI S
Sbjct: 194 NPNI--------------------------------------------EIPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ + K + GVMIGR A+ PWIF E+K
Sbjct: 210 PQKALD-YKNKYACDGVMIGRAAIGYPWIFNEVK 242
>gi|190570967|ref|YP_001975325.1| NifR3 family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|190357239|emb|CAQ54661.1| NifR3 family protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
Length = 316
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 129/332 (38%), Gaps = 110/332 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + SEM + ++ + Q +++ + ++L VQL
Sbjct: 14 VILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---MQKAKVDELTAVQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P V+ + + L E M +D+N GCP++ + +GS L++
Sbjct: 71 AGCEPDVMAEAAK-LNEGMGAKIIDINFGCPVKKVVNGYAGSALMRDEK----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +++E VV V V P
Sbjct: 119 ----KAAEIIEA--VVKAVSV--------------------------------------P 134
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 135 VTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV------ 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+EQ P+ NGDI S
Sbjct: 189 --------------------------KEQ------------------VKIPVIVNGDIKS 204
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D +LK+S + GVMIGRG KPW+ +
Sbjct: 205 LNDVQSALKESGA-DGVMIGRGTYGKPWLINQ 235
>gi|262405851|ref|ZP_06082401.1| dehydrogenase [Bacteroides sp. 2_1_22]
gi|294647812|ref|ZP_06725364.1| TIM-barrel protein, nifR3 family [Bacteroides ovatus SD CC 2a]
gi|294806206|ref|ZP_06765053.1| TIM-barrel protein, nifR3 family [Bacteroides xylanisolvens SD CC
1b]
gi|336405457|ref|ZP_08586136.1| hypothetical protein HMPREF0127_03449 [Bacteroides sp. 1_1_30]
gi|345510362|ref|ZP_08789930.1| dehydrogenase [Bacteroides sp. D1]
gi|229443066|gb|EEO48857.1| dehydrogenase [Bacteroides sp. D1]
gi|262356726|gb|EEZ05816.1| dehydrogenase [Bacteroides sp. 2_1_22]
gi|292636720|gb|EFF55186.1| TIM-barrel protein, nifR3 family [Bacteroides ovatus SD CC 2a]
gi|294446462|gb|EFG15082.1| TIM-barrel protein, nifR3 family [Bacteroides xylanisolvens SD CC
1b]
gi|335938038|gb|EGM99932.1| hypothetical protein HMPREF0127_03449 [Bacteroides sp. 1_1_30]
Length = 331
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|319900676|ref|YP_004160404.1| tRNA-U20-dihydrouridine synthase [Bacteroides helcogenes P 36-108]
gi|319415707|gb|ADV42818.1| tRNA-U20-dihydrouridine synthase [Bacteroides helcogenes P 36-108]
Length = 332
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 134/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ +E A L++S + + E +Q+
Sbjct: 13 VLLAPMEDVTDPAFRLMCKQFGADMVYTEFVSADALIRSVSKTEQKLNISTEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTETMVEAARIV-EQAHPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDADHKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPVIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + +MIGR + +PW F+E++
Sbjct: 209 PERAKECFDLY-GVDAIMIGRASFGRPWFFKEVR 241
>gi|167763922|ref|ZP_02436049.1| hypothetical protein BACSTE_02304 [Bacteroides stercoris ATCC
43183]
gi|167698038|gb|EDS14617.1| TIM-barrel protein, nifR3 family [Bacteroides stercoris ATCC 43183]
Length = 325
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 134/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK +GAD+ +E + L++S + + + E +Q+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKGFGADMVYTEFVSSDALIRSVSKTEQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++E Q D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGKDTDTMVEAARIVE-QARPDILDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + + + +P
Sbjct: 121 KML--------------------------------------------EITRAVADAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDAGSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRAKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|423214380|ref|ZP_17200908.1| hypothetical protein HMPREF1074_02440 [Bacteroides xylanisolvens
CL03T12C04]
gi|392692795|gb|EIY86031.1| hypothetical protein HMPREF1074_02440 [Bacteroides xylanisolvens
CL03T12C04]
Length = 331
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLICKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|407457258|ref|YP_006735831.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci VS225]
gi|405784519|gb|AFS23266.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci VS225]
Length = 264
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + ++LE + D +D+N GCP + I K GSGSGLL+ ++ ++
Sbjct: 4 IGGQLCGSKPEMAGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKIL 62
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G +N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 63 EKIIEAVSIPVTVKIRSGWDCNNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 122
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D
Sbjct: 123 IARAKAAAGKD------------------------------------------------L 134
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + + S GV++ RG + PWI ++I+
Sbjct: 135 PVFGNGDIFSPEA-AKLMMDSTQCDGVLVARGTMGAPWIVRQIE 177
>gi|402846613|ref|ZP_10894924.1| TIM-barrel protein, nifR3 family [Porphyromonas sp. oral taxon 279
str. F0450]
gi|402267829|gb|EJU17220.1| TIM-barrel protein, nifR3 family [Porphyromonas sp. oral taxon 279
str. F0450]
Length = 337
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + FR LC+++GAD+ +E A L++ Q+
Sbjct: 13 LLLAPMEDVTDAAFRLLCRRFGADMVYTEFLSADALIR--------------------QV 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G T+ ++ E+ V +Q+ G
Sbjct: 53 AGT-----TRKLEISAEERPV------------------------------AIQIYGREV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++ E + +D+N GCP++ + +G+GSG+L+ +++ +++ + + +P
Sbjct: 78 EPMVEAARIAEAAGP-EVLDLNFGCPVKRVAGKGAGSGMLRCPDVMLRIVSEIVKAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II +D G +T+HGRTR Q YT ADW I K +
Sbjct: 137 VTVKTRLGWDNDSKIIVELAEALQDVGIQALTIHGRTRAQMYTGSADWTLIGKV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI +
Sbjct: 192 ENPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E+ + + + VM+GR + +PWIF+E+K
Sbjct: 209 GEEVKRAF-DTYGVDAVMVGRATIGQPWIFEEMK 241
>gi|295085714|emb|CBK67237.1| tRNA-U20-dihydrouridine synthase [Bacteroides xylanisolvens XB1A]
Length = 331
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLICKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|398335214|ref|ZP_10519919.1| tRNA-dihydrouridine synthase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 318
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/340 (23%), Positives = 139/340 (40%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + + H E
Sbjct: 11 GRISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMFRFHPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL+R + +I M + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPVLAGKIIEAMKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G + + GA +T+HGRT+E YT ADW+ I
Sbjct: 135 VPVTAKIRIGWDSTSRNYLEVSKILEESGADALTVHGRTKEMAYTGLADWNAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + QR P++GNGDI
Sbjct: 188 -------------------------GEIKAQRKI------------------PIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ +++ + GV+IGR A+ PWIF EIK+++L
Sbjct: 205 KSFQEANSKIQEY-GLDGVLIGRSAIGNPWIFSEIKKEEL 243
>gi|423293659|ref|ZP_17271786.1| hypothetical protein HMPREF1070_00451 [Bacteroides ovatus
CL03T12C18]
gi|392677617|gb|EIY71033.1| hypothetical protein HMPREF1070_00451 [Bacteroides ovatus
CL03T12C18]
Length = 331
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E + + VMIGR + +PWIF+E+K
Sbjct: 209 PERCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|423300888|ref|ZP_17278912.1| tRNA dihydrouridine synthase A [Bacteroides finegoldii CL09T03C10]
gi|408472223|gb|EKJ90751.1| tRNA dihydrouridine synthase A [Bacteroides finegoldii CL09T03C10]
Length = 325
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------SISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVEEAQP-DILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGD+ +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|339498804|ref|YP_004696839.1| TIM-barrel protein, nifR3 family [Spirochaeta caldaria DSM 7334]
gi|338833153|gb|AEJ18331.1| TIM-barrel protein, nifR3 family [Spirochaeta caldaria DSM 7334]
Length = 333
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 104/341 (30%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ +G L+L+P+ + FR +C + GA+ TC+E+ + L++ + + L+KR ++E
Sbjct: 17 LELEGNLFLAPVAGYSDRAFRSVCIELGANFTCTELISSEALIRDAKKSEYLMKRADNEK 76
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ +QL G++P V+ + L + VD+N GCP+ + K G+GS L++ N G
Sbjct: 77 AYAIQLFGSDPEVMYQAALRLASYHP-EVVDINCGCPVPKVVKTGAGSALMRDLNRLG-- 133
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
I+ +V+
Sbjct: 134 -------------------------------------------------KIVAAVVRASR 144
Query: 435 E-VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E + +P+TVK R+G + + + GA+L+ LH RTR Q Y +A W++I
Sbjct: 145 EALGGVPVTVKIRSGWDEKSINYREAAAIAVENGAALVALHARTRAQGYAGKAQWEHI-- 202
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
A L SR +T+ P+
Sbjct: 203 -ADLASR-------------------LTV----------------------------PVV 214
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
G+GD+ S ED L+++ + VM RGA+ P+IF E +
Sbjct: 215 GSGDLFSPEDALRMLQET-GCAAVMFARGAMGNPFIFTETR 254
>gi|227538764|ref|ZP_03968813.1| tRNA-dihydrouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
gi|227241273|gb|EEI91288.1| tRNA-dihydrouridine synthase [Sphingobacterium spiritivorum ATCC
33300]
Length = 331
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 135/335 (40%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ G D+ +E + L++ + + + E E G+Q+
Sbjct: 16 LLLAPMEDVSDPPFRYVCKQNGVDMMYTEFISSEGLIRDAAKSRQKLDIFEYERPIGIQI 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG-NN 379
G IE + +Q S ++C N
Sbjct: 76 ---------------------------FGSEIEHM-RQSS-------------EICSLAN 94
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P D +D+N GCP++ + +G+GS LLQ + + ++ + E + L
Sbjct: 95 P----------------DLIDINYGCPVKNVVCKGAGSSLLQDIDKMVAMTKAVVEATHL 138
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G + ++ + +D G +++HGRTR Q Y QADW I +
Sbjct: 139 PVTVKTRLGWDDNTKNVYEVAERLQDVGIKALSIHGRTRAQMYKGQADWSMIRDVKR--- 195
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ + P++GNGDI
Sbjct: 196 ---------NPRIK------------------------------------IPIFGNGDID 210
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
S E + ++ + G+MIGR ++ PWIF+EIK
Sbjct: 211 SVEK-AAAWRQEFEVDGIMIGRASIGYPWIFREIK 244
>gi|154484004|ref|ZP_02026452.1| hypothetical protein EUBVEN_01712 [Eubacterium ventriosum ATCC
27560]
gi|149735046|gb|EDM50932.1| TIM-barrel protein, nifR3 family [Eubacterium ventriosum ATCC
27560]
Length = 317
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 135/342 (39%), Gaps = 109/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L L P+ V +LPFR LCK+ G + +EM A +L + L+ ++E
Sbjct: 6 VEIENSLALGPMAGVTDLPFRLLCKEQGCGMLYTEMVSAKAILYKNKNTNILLNIDKAEH 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQL G++P ++ + + E DF+D+N+GCP+ I GS LL + L
Sbjct: 66 PIAVQLFGSDPDIMAEIGAKVAEG-PCDFIDINMGCPVPKIVNNHEGSYLLTQPKLV--- 121
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+LTK + +++
Sbjct: 122 -----EQILTKMVKAIKK------------------------------------------ 134
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEK 493
P+T+K R G KD I + + + G S I +HGRTREQ Y+ +ADWD I++
Sbjct: 135 -----PVTIKVRKGF-KDGEIQAPEIARIAESCGVSAIAVHGRTREQYYSGKADWDVIKE 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ P+
Sbjct: 189 VKEAVK--------------------------------------------------IPVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI S +D +++K+ G+M+GR A PWIF++IKE
Sbjct: 199 GNGDIFSAKD-AKAMKEYTGCDGLMVGRAARGNPWIFKQIKE 239
>gi|298207228|ref|YP_003715407.1| TIM-barrel enzyme, dehydrogenase [Croceibacter atlanticus HTCC2559]
gi|83849864|gb|EAP87732.1| putative TIM-barrel enzyme, possible dehydrogenase [Croceibacter
atlanticus HTCC2559]
Length = 330
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K +++E D +D+N GCP++ + +G+G+G+L+ +++ S+ M + + LP
Sbjct: 79 ESMLKSVEIVEASGP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTEAMVKHTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G + I +HGRTR+Q Y A W+ Q+
Sbjct: 138 VTVKTRLGWDEESIKIVEVAERLQDVGCAAIAIHGRTRKQMYKGDAKWE------QIADV 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ P++GNGD+ +
Sbjct: 192 KNN------PRMH------------------------------------IPVFGNGDVNT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PERAVE-MRDKYGLDGAMIGRASIGYPWFFREVK 242
>gi|255693550|ref|ZP_05417225.1| zinc-binding TIM-barrel protein, nifR3 family [Bacteroides
finegoldii DSM 17565]
gi|260620615|gb|EEX43486.1| TIM-barrel protein, nifR3 family [Bacteroides finegoldii DSM 17565]
Length = 325
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKAAQKLS---------------------------ISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVEEAQP-DILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGD+ +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|336412851|ref|ZP_08593204.1| hypothetical protein HMPREF1017_00312 [Bacteroides ovatus
3_8_47FAA]
gi|335942897|gb|EGN04739.1| hypothetical protein HMPREF1017_00312 [Bacteroides ovatus
3_8_47FAA]
Length = 331
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ S
Sbjct: 192 NNPKMH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|325268625|ref|ZP_08135255.1| tRNA-dihydrouridine synthase B [Prevotella multiformis DSM 16608]
gi|324989153|gb|EGC21106.1| tRNA-dihydrouridine synthase B [Prevotella multiformis DSM 16608]
Length = 319
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 135/340 (39%), Gaps = 105/340 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + +E A A+I+ S
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAMVYTEFVSAD----------AIIRSIRS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L+K M +D R G+Q+ G +
Sbjct: 55 ------TLSK--------MVID-----------------------DRERPVGIQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+GSG+L+ +L + + + +P
Sbjct: 78 ASMVEAARIVE-QAGPDVIDINFGCPVKKVANKGAGSGMLKNIPLLLEITREVVKAVKVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G +T+HGRTR Q YT ADW I + +
Sbjct: 137 VTVKTRLGWDHDHLIITDLAEQLQDCGIQTLTIHGRTRAQMYTGSADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+
Sbjct: 192 KNPRIH-------------------------------------------IPVIGNGDVKD 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
D E + + VMIGR PWIF + EK D
Sbjct: 209 VGDAREKFDRY-GVDAVMIGRATFGCPWIFGKGTEKLTLD 247
>gi|345302282|ref|YP_004824184.1| TIM-barrel protein, nifR3 family [Rhodothermus marinus
SG0.5JP17-172]
gi|345111515|gb|AEN72347.1| TIM-barrel protein, nifR3 family [Rhodothermus marinus
SG0.5JP17-172]
Length = 358
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 106/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + PFR LCK++GAD+ +E + L+ HESED
Sbjct: 13 LFLAPMEDVSDPPFRLLCKRYGADMVFTEFISSGGLV------------HESEDA----- 55
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K + +E+ V G+Q+ G
Sbjct: 56 --------VKKLDIYDEERPV------------------------------GIQIFGGEL 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++++ ++ D +D+N GCP+ + + +G+G+L+ N ++++ + EV++ P
Sbjct: 78 EQVREAARIVD-RIGPDVIDINFGCPVRKVVCKDAGAGVLRDLNKMRALTEAVIEVATRP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + I D G +T+H RTR Q Y A W+++ + +L
Sbjct: 137 VTVKTRLGWDDHSIRILEVARMLEDCGVQALTVHARTRAQMYKGSARWEWLRRLKEL--- 193
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
G S+ P+ GNGD L+
Sbjct: 194 ---------------GLSI-------------------------------PIIGNGDALT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + GVMIGRGA+ PWIF++ K
Sbjct: 208 PEKVKQMFDET-GVDGVMIGRGAIGNPWIFRDAK 240
>gi|332287905|ref|YP_004422806.1| dihydrouridine synthase family protein [Chlamydophila psittaci 6BC]
gi|406593942|ref|YP_006741121.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci NJ1]
gi|406594241|ref|YP_006742156.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci MN]
gi|407454571|ref|YP_006733679.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci 84/55]
gi|407455832|ref|YP_006734723.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci GR9]
gi|407461186|ref|YP_006738961.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci WC]
gi|325507219|gb|ADZ18857.1| dihydrouridine synthase family protein [Chlamydophila psittaci 6BC]
gi|405781330|gb|AFS20080.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci 84/55]
gi|405782375|gb|AFS21124.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci GR9]
gi|405782673|gb|AFS21421.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci MN]
gi|405787194|gb|AFS25938.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci WC]
gi|405789814|gb|AFS28556.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci NJ1]
Length = 291
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + ++LE + D +D+N GCP + I K GSGSGLL+ ++ ++
Sbjct: 31 IGGQLCGSKPEMAGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKIL 89
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G +N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 90 EKIIEAVSIPVTVKIRSGWDCNNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 149
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D
Sbjct: 150 IARAKAAAGKD------------------------------------------------L 161
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + + S GV++ RG + PWI ++I+
Sbjct: 162 PVFGNGDIFSPEA-AKLMMDSTQCDGVLVARGTMGAPWIVRQIE 204
>gi|188993880|ref|YP_001928132.1| hypothetical protein PGN_0016 [Porphyromonas gingivalis ATCC 33277]
gi|188593560|dbj|BAG32535.1| putative TIM-barrel protein [Porphyromonas gingivalis ATCC 33277]
Length = 333
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V ++ FR +CK++GAD+ SE A L++ Q+
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIR--------------------QV 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +MA+D + VQ+ G +
Sbjct: 53 AGTF------------RKMAID-----------------------ESERPMAVQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +L E D +D+N GCP++ + +G+GSG+L+ ++ + + + LP
Sbjct: 78 ASMVEAARLCESAGP-DLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREVVKAVKLP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + +T+HGRTR Q YT ADW I +
Sbjct: 137 VTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ +
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++ + + VM+GR ++ +PWIF+++K
Sbjct: 209 PQEARRAFDVY-GVDAVMVGRASIGQPWIFEDMK 241
>gi|163754515|ref|ZP_02161637.1| probable TIM-barrel protein, NifR3 family [Kordia algicida OT-1]
gi|161325456|gb|EDP96783.1| probable TIM-barrel protein, NifR3 family [Kordia algicida OT-1]
Length = 330
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ +
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDA-------------------- 53
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K T L+ + ++ G+Q+ G N
Sbjct: 54 --------AKSTMKLD---------------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+ M + + LP
Sbjct: 79 DSMLKSVEIVEKSGP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTEAMVKHTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + +D G + I +HGRTR Q Y +A+W I +
Sbjct: 138 VTVKTRLGWDENTIKIVEVAERLQDVGCASIAIHGRTRAQMYKGEANWHPIAAV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PEK-AMLMRDKFGLDGAMIGRASIGYPWFFREVK 242
>gi|334145828|ref|YP_004508755.1| NifR3 family TIM-barrel protein [Porphyromonas gingivalis TDC60]
gi|333802982|dbj|BAK24189.1| NifR3 family TIM-barrel protein [Porphyromonas gingivalis TDC60]
Length = 333
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V ++ FR +CK++GAD+ SE A L++ Q+
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIR--------------------QV 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +MA+D + VQ+ G +
Sbjct: 53 AGTF------------RKMAID-----------------------ESERPMAVQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +L E D +D+N GCP++ + +G+GSG+L+ ++ + + + LP
Sbjct: 78 ASMVEAARLCESAGP-DLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREVVKAVKLP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + +T+HGRTR Q YT ADW I +
Sbjct: 137 VTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ +
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++ + + VM+GR ++ +PWIF+++K
Sbjct: 209 PQEARRAFDVY-GVDAVMVGRASIGQPWIFEDMK 241
>gi|383649565|ref|ZP_09959971.1| dihydrouridine synthase TIM-barrel protein nifR3 [Sphingomonas
elodea ATCC 31461]
Length = 332
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 133/338 (39%), Gaps = 107/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+ + L+P+T V +LPFRR +++G+ + +EM + ++ + Q
Sbjct: 15 EAPVLLAPMTGVTDLPFRRAVRRFGSGLNVTEMIASAAAIRETRQS-------------- 60
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
VQ +P +EE +++ QL G
Sbjct: 61 VQKAAWDP---------IEEPVSM--------------------------------QLVG 79
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
P+ + + +L E++ +D+N+GCP+ + +GS L++ + ++I +
Sbjct: 80 CTPHEMAEAAKLNEDRGAA-IIDINMGCPVRKVTNGDAGSALMRDLDHAGAIIRACVDAV 138
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
P+TVK R G D+ + +D GA L+T+HGRTR Q Y ADW ++ +
Sbjct: 139 QAPVTVKMRMGWDHDSLNAPDLAKIAQDLGAKLVTVHGRTRNQMYRGSADWSFVRRVKDA 198
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P+ NGD
Sbjct: 199 VS--------------------------------------------------IPVIVNGD 208
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
I S D E+L +S + GVMIGRGA KPWI +++ +
Sbjct: 209 ICSVADAREALAQSGA-DGVMIGRGAYGKPWILRQVMD 245
>gi|225026968|ref|ZP_03716160.1| hypothetical protein EUBHAL_01224 [Eubacterium hallii DSM 3353]
gi|224955704|gb|EEG36913.1| TIM-barrel protein, nifR3 family [Eubacterium hallii DSM 3353]
Length = 316
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 125/334 (37%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + +LPFR LCK+ GAD+ +EM A L + L++ E E GVQ+
Sbjct: 13 IILAPMAGITDLPFRILCKEQGADVMVTEMISAKALFYGNKNTLPLMQTEEEEKPIGVQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ + +E++ ++D+N+GCP+ I GS L+ L G
Sbjct: 73 FGSEPELMGEMAHKIEDK-GFSYIDINMGCPVPKIVNNKEGSALMLNPELAG-------- 123
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+V V + P+ +++G + + Q
Sbjct: 124 -------------RIVKEVSKAVSLPVTVKFRKGFDADHINAPEFAQ------------- 157
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
I ++N GA+ + +HGRTR Q YT QADWD I S
Sbjct: 158 --------IMEEN-------------GAAAVAVHGRTRVQYYTGQADWDIIRDVKNAVS- 195
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI
Sbjct: 196 -------------------------------------------------IPVIGNGDIFK 206
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED + ++ G+M+ RGA PWIF+E+K
Sbjct: 207 GEDAVK-MRDYTGCDGIMVARGAKGNPWIFREVK 239
>gi|363582693|ref|ZP_09315503.1| TIM-barrel protein, nifR3 family [Flavobacteriaceae bacterium HQM9]
Length = 329
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E D +D+N GCP++ + +G+G+G+L+ +++ + M + + LP
Sbjct: 79 DSMLRSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVKLTEAMVKHTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G I +HGRTR Q Y +ADW I + +
Sbjct: 138 VTVKTRLGWDHDSIRIVEVAERLQDVGCKSIAIHGRTRAQLYKGEADWKPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PERAVE-MRDQYGLDGAMIGRASIGYPWFFNEVK 242
>gi|403714553|ref|ZP_10940456.1| putative tRNA-dihydrouridine synthase [Kineosphaera limosa NBRC
100340]
gi|403211486|dbj|GAB95139.1| putative tRNA-dihydrouridine synthase [Kineosphaera limosa NBRC
100340]
Length = 396
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 138/340 (40%), Gaps = 115/340 (33%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ L+P+ + N FRRLC++WG D + SEM + L++ SP+ LI+ H++
Sbjct: 31 VVLAPMAGITNRAFRRLCRQWGPDCLYVSEMITSRALVERSPETMRLIE-HDA------- 82
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G +P +QL G +
Sbjct: 83 --GESPR---------------------------------------------SIQLYGVD 95
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVSS 438
P + +LL + D +D+N GCP+ + ++G G+ L + + + +++ + E S+
Sbjct: 96 PATVRLAARLLVTEDRADHIDLNFGCPVPKVTRKGGGAALPWKTELFRGIVSAAVGEASA 155
Query: 439 --LPITVKTRTGIHKDNNIIHNFMPKFR---DWGASLITLHGRTREQRYTKQADWDYIEK 493
+P+TVK R GI +D+ H ++ R G + + LH RT Q Y+ QADW I +
Sbjct: 156 RGIPVTVKMRIGIDEDH---HTYLEAGRIAQQEGVAAVALHARTASQAYSGQADWSAIAR 212
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
++ ++ P+
Sbjct: 213 LREVVTQ-------------------------------------------------VPVL 223
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI S D ++ ++ GV++GRG L +PW+F ++
Sbjct: 224 GNGDIWSAADAV-AMVRATGCDGVVVGRGCLGRPWLFADL 262
>gi|228470160|ref|ZP_04055069.1| NifR3 family protein [Porphyromonas uenonis 60-3]
gi|228308298|gb|EEK17153.1| NifR3 family protein [Porphyromonas uenonis 60-3]
Length = 330
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK++GA + +E A L++ P ++ +E +Q+
Sbjct: 13 LLLAPMEDVSDAPFRLLCKQFGASLVYTEFISADALVRYVPSTMRKMRIDPAERPVAIQI 72
Query: 321 CGNNPYVLTKC-TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G + V T C + Q+ D +D+N GCP++ + +G+GSG+L+ L
Sbjct: 73 YGRD--VETMCEAARIACQLEPDLLDLNFGCPVKRVAGKGAGSGMLREPEL--------- 121
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
LLE I +V+ N
Sbjct: 122 ---------LLE---------------------------------ITAAVVAAAN----C 135
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G ++ II P+ + G + +T+HGRTR Y ADW
Sbjct: 136 PVTVKTRLGWDHNSLIITELAPRLQACGIAALTIHGRTRSDMYKGSADW----------- 184
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
TL G R + P+ GNGDI
Sbjct: 185 ---------------------TLIGEVRSNPEIQ----------------IPIIGNGDIT 207
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E+ + + GVM+GR A+ +PWIF E++
Sbjct: 208 TGEEVRHAFDTY-GVDGVMVGRAAIGQPWIFGEMR 241
>gi|288929784|ref|ZP_06423627.1| TIM-barrel protein, putative, NifR3 family [Prevotella sp. oral
taxon 317 str. F0108]
gi|288328885|gb|EFC67473.1| TIM-barrel protein, putative, NifR3 family [Prevotella sp. oral
taxon 317 str. F0108]
Length = 329
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 139/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + +E A AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRLLCKRFGAAMVYTEFVSAE----------ALVRSVKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K T EE+ P+ G+Q+ G +
Sbjct: 55 ------TVSKLTISDEER------------PV-------------------GIQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+L+ ++ + + P
Sbjct: 78 ESMVEAARIVE-QSRPDVIDINFGCPVKKVAGKGAGAGMLRNVPLMLEITREVVRAVRTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + II + +D G + +T+HGRTR Q YT +ADW YI + +
Sbjct: 137 VTVKTRLGWDCEEIIIPTLAEQLQDCGIAALTIHGRTRSQMYTGEADWRYIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI +
Sbjct: 192 ANPRIH-------------------------------------------IPIIGNGDICT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E + + VM+GR +PW+F+E+K+
Sbjct: 209 PQQAKEVFSRY-GVDAVMVGRATFGRPWVFKEMKD 242
>gi|456875424|gb|EMF90625.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str. ST188]
Length = 318
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 142/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P R++C+K+GA + +E EL+ +P+ + + E
Sbjct: 11 GRISLSPMAGISDSPTRKICRKFGAAFSYTEFVNTDELVHRAPKALNMFRFDPEER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGLADWDAIGEI-KTRRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|224372117|ref|YP_002606489.1| tRNA-dihydrouridine synthase B [Nautilia profundicola AmH]
gi|223588677|gb|ACM92413.1| tRNA-dihydrouridine synthase B [Nautilia profundicola AmH]
Length = 313
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/338 (25%), Positives = 135/338 (39%), Gaps = 110/338 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+L+PL +LPFR + KK+G D+T SEM +
Sbjct: 13 FFLAPLAGYTDLPFRSVVKKFGCDMTFSEMTNVNAI------------------------ 48
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
Y K +++E+ P+E N + VQ+ NN
Sbjct: 49 ----AYQNEKTQKMMEK------------SPLE---------------NPYFVQIAANNV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN--ILQSVITCMNEVSS 438
K +++ E +D +D+NLGCP+ + G G LL+ N L+ V+ + + S
Sbjct: 78 ENAVKAVEIINELNWIDGIDINLGCPVNKARRSGFGGVLLKDENRDFLKEVVGTIVKTSK 137
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
P++ K R G D +++ + D G +T+HGRT +Q Y +AD+D I+K
Sbjct: 138 KPVSAKMRIGF--DKSVVEDRAKLLEDLGIVFLTIHGRTVKQMYKGEADYDEIKK----- 190
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + + + P+ NGDI
Sbjct: 191 -----------------GVNAVKI----------------------------PVIANGDI 205
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
YE L+ + + SGV IGRGA+ KPWIF E+K++
Sbjct: 206 TDYEKAKYVLEYTGA-SGVSIGRGAVGKPWIFLEMKQQ 242
>gi|402495828|ref|ZP_10842547.1| nifR3 family TIM-barrel protein [Aquimarina agarilytica ZC1]
Length = 329
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E D +D+N GCP++ + +G+G+G+L+ +++ + M + + LP
Sbjct: 79 DSMLRSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVKLTEAMVKHTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G I +HGRTR Q Y +ADW I + +
Sbjct: 138 VTVKTRLGWDHDSIRIVEVAERLQDVGCKSIAIHGRTRAQLYKGEADWKPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PERAVE-MRDQYGLDGAMIGRASIGYPWFFNEVK 242
>gi|225631215|ref|ZP_03787910.1| NifR3 family protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591088|gb|EEH12275.1| NifR3 family protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 310
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 133/339 (39%), Gaps = 124/339 (36%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V + PFR + KK GA + S E++ S +++ H+S
Sbjct: 4 VILAPMSGVTDYPFRSIVKKLGASLLVS------EMIASRAM---IMQTHQS-------- 46
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN---LFGVQLCG 377
LQ+A L VQL G
Sbjct: 47 --------------------------------------------LQKAKVDALTAVQLAG 62
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ----RANILQSVITCM 433
PYV+ + +L E M +D+N GCP++ + +GS L++ A I+++V+ +
Sbjct: 63 CEPYVMAEAAKL-NEDMGAKIIDINFGCPVKKVVNGYAGSALMRDEKKAAEIIEAVVKAV 121
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
N +P+TVK RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 122 N----VPVTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRN 177
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+EQ P+
Sbjct: 178 V--------------------------------KEQ------------------VKIPVI 187
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
NGDI + D +LK+S + GVMIGRGA KPW+ +
Sbjct: 188 VNGDIKNLNDIQNALKESGA-DGVMIGRGAYGKPWLINQ 225
>gi|118475725|ref|YP_891451.1| tRNA-dihydrouridine synthase B [Campylobacter fetus subsp. fetus
82-40]
gi|261885859|ref|ZP_06009898.1| tRNA-dihydrouridine synthase B [Campylobacter fetus subsp.
venerealis str. Azul-94]
gi|424820155|ref|ZP_18245193.1| tRNA-dihydrouridine synthase B [Campylobacter fetus subsp.
venerealis NCTC 10354]
gi|118414951|gb|ABK83371.1| tRNA-dihydrouridine synthase B [Campylobacter fetus subsp. fetus
82-40]
gi|342326934|gb|EGU23418.1| tRNA-dihydrouridine synthase B [Campylobacter fetus subsp.
venerealis NCTC 10354]
Length = 306
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/348 (25%), Positives = 137/348 (39%), Gaps = 111/348 (31%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+PL +LP R + KK+G D+T SEM + L+ + + ++I+++ E
Sbjct: 2 IDFSSKPLFLAPLAGFSDLPLRGIVKKFGCDVTISEMISSNALVYENTKTVSMIEKNPLE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
PY+ V
Sbjct: 62 ----------TPYI---------------------------------------------V 66
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
QL GN ++ + Q+L + +D +D+N GCP+ + KQ SGS LL L ++ +
Sbjct: 67 QLAGNGSEIIKQAVQILNDIEGIDGIDLNCGCPVPKVVKQNSGSALLNDIKTLCEIVETI 126
Query: 434 NEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ S+ T VK R G ++ HN + GA I +HGRTR Y+ + D++ I
Sbjct: 127 KKTSNKHYTSVKIRLGF--NSKTAHNIAKDIENAGADFICVHGRTRAGGYSAKVDYEAIG 184
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
Q S P+
Sbjct: 185 LVKQSVS--------------------------------------------------IPV 194
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
NGDI + ++ E L+ + + GVMIGR ++ PWIF EIK KK D
Sbjct: 195 IANGDI-NAKNADEILRLT-NCDGVMIGRASIGNPWIFYEIKHKKPVD 240
>gi|380692937|ref|ZP_09857796.1| dehydrogenase [Bacteroides faecis MAJ27]
Length = 330
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K Q L + +Q+ G +
Sbjct: 51 ------AVNKTAQKL---------------------------SISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|302380164|ref|ZP_07268636.1| TIM-barrel protein, nifR3 family [Finegoldia magna ACS-171-V-Col3]
gi|417926354|ref|ZP_12569753.1| TIM-barrel protein, nifR3 family [Finegoldia magna
SY403409CC001050417]
gi|302311947|gb|EFK93956.1| TIM-barrel protein, nifR3 family [Finegoldia magna ACS-171-V-Col3]
gi|341589204|gb|EGS32486.1| TIM-barrel protein, nifR3 family [Finegoldia magna
SY403409CC001050417]
Length = 310
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/348 (24%), Positives = 139/348 (39%), Gaps = 112/348 (32%)
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
K+K++ L+L+PL V ++PFR I C E+
Sbjct: 3 KEKLNLNSNLFLAPLAGVTDIPFR---------IICGEL--------------------- 32
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL---QRA 368
G LC T+++ + Y LL R
Sbjct: 33 -----GAGLC---------FTEMISAK--------------ALYYDDKKTKKLLDTDSRE 64
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
N VQ+ G+ P ++ T+ L E +D+N+GCP I+K G GS L+ N+ +
Sbjct: 65 NDTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAED 124
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
VI + LP++VK R GI +++ N+M
Sbjct: 125 VIRACKNNTDLPVSVKFRLGIDENS---MNYM---------------------------- 153
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
+ AQ+C R ITLH RTR+ Y+ +ADW +I++ +
Sbjct: 154 ----QLAQICER--------------LKVDYITLHARTRKMFYSGEADWSHIKRVVENVD 195
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
P++GNGD + ED ++++ S + GV++ RGA+ P+IF + + K
Sbjct: 196 -IPVFGNGDCFTKEDIRKNMEYS-NCDGVLLARGAMQNPFIFSDDENK 241
>gi|418745797|ref|ZP_13302133.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str.
CBC379]
gi|418752521|ref|ZP_13308780.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str.
MOR084]
gi|409967079|gb|EKO34917.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str.
MOR084]
gi|410793428|gb|EKR91347.1| TIM-barrel protein, nifR3 family [Leptospira santarosai str.
CBC379]
Length = 318
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 142/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P R++C+K+GA + +E EL+ +P+ + + E
Sbjct: 11 GRISLSPMAGISDSPTRKICRKFGAAFSYTEFVNTDELVHRAPKALNMFRFDPKER---- 66
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 67 --------------------------------PITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGLADWDAIGEI-KTRRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|407459813|ref|YP_006737916.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci M56]
gi|405785959|gb|AFS24704.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci M56]
Length = 287
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + ++LE + D +D+N GCP + I K GSGSGLL+ ++ ++
Sbjct: 27 IGGQLCGSKPEMAGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKIL 85
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G +N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 86 EKIIEAVSIPVTVKIRSGWDCNNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 145
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D
Sbjct: 146 IARAKAAAGQD------------------------------------------------L 157
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + + S GV++ RG + PWI ++I+
Sbjct: 158 PVFGNGDIFSPEA-AKLMMDSTQCDGVLVARGTMGAPWIVRQIE 200
>gi|348030855|ref|YP_004873541.1| tRNA-dihydrouridine synthase B [Glaciecola nitratireducens FR1064]
gi|347948198|gb|AEP31548.1| tRNA-dihydrouridine synthase B [Glaciecola nitratireducens FR1064]
Length = 332
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 133/339 (39%), Gaps = 119/339 (35%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK-----RHESED- 314
L L+P+ V + PFR+LCKK GA + SEM L S+P+ W +K HE E
Sbjct: 12 LMLAPMAGVTDRPFRQLCKKMGAGLVVSEM------LSSNPKVWNTVKSQLRMNHEGESG 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G+ P+++ + Q E A +D+N+GCP + + K+ +GS LLQ+ L
Sbjct: 66 VRSVQIAGSEPHLMAQAAQFNVENGA-QIIDINMGCPAKKVNKKLAGSALLQQPELV--- 121
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+I+++V+ +
Sbjct: 122 ------------------------------------------------ESIVKAVVDAVQ 133
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+P+T+K RTG DN G + +HGRTR Y A++D I+K
Sbjct: 134 ----VPVTLKIRTGWDTDNRNGVQIAQIAEANGIQSLAVHGRTRACMYKGNAEYDTIKKI 189
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+
Sbjct: 190 KETIS--------------------------------------------------IPVIA 199
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDILS +D E L+ + + G+MIGRGA PWIF++I
Sbjct: 200 NGDILSVDDAKEVLRYTGA-DGIMIGRGAQGNPWIFRQI 237
>gi|317478240|ref|ZP_07937405.1| dihydrouridine synthase [Bacteroides sp. 4_1_36]
gi|423304598|ref|ZP_17282597.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T00C23]
gi|423310288|ref|ZP_17288272.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T12C37]
gi|316905547|gb|EFV27336.1| dihydrouridine synthase [Bacteroides sp. 4_1_36]
gi|392682484|gb|EIY75829.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T12C37]
gi|392684048|gb|EIY77380.1| tRNA dihydrouridine synthase A [Bacteroides uniformis CL03T00C23]
Length = 326
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CK +GAD+ +E A L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGRDTATMVEAARIV-EQAHPDTLDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PW F+E+K
Sbjct: 209 PQRAKECFDLY-GVDAIMIGRASFGRPWFFKEVK 241
>gi|410858917|ref|YP_006974857.1| putative dihydrouridine synthase [Chlamydia psittaci 01DC12]
gi|410811812|emb|CCO02467.1| putative dihydrouridine synthase [Chlamydia psittaci 01DC12]
Length = 332
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + ++LE + D +D+N GCP + I K GSGSGLL+ ++ ++
Sbjct: 72 IGGQLCGSKPEMAGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKIL 130
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G +N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 131 EKIIEAVSIPVTVKIRSGWDCNNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 190
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D
Sbjct: 191 IARAKAAAGKD------------------------------------------------L 202
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + + S GV++ RG + PWI ++I+
Sbjct: 203 PVFGNGDIFSPEA-AKLMMDSTQCDGVLVARGTMGAPWIVRQIE 245
>gi|160891700|ref|ZP_02072703.1| hypothetical protein BACUNI_04155 [Bacteroides uniformis ATCC 8492]
gi|270295204|ref|ZP_06201405.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|156859107|gb|EDO52538.1| TIM-barrel protein, nifR3 family [Bacteroides uniformis ATCC 8492]
gi|270274451|gb|EFA20312.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 326
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
++L+P+ V + FR +CK +GAD+ +E A L++S + + + E +Q+
Sbjct: 13 VFLAPMEDVTDPAFRLMCKHFGADMVYTEFVSADALIRSVGKTQQKLNISDEERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + +++ EQ D +D+N GCP++ + +G+G+G+LQ N P
Sbjct: 73 YGRDTATMVEAARIV-EQAHPDTLDINFGCPVKRVAGKGAGAGMLQ-----------NIP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L + VVD V + P
Sbjct: 121 LMLEIT------RAVVDAVKI--------------------------------------P 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGDI +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDITT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PW F+E+K
Sbjct: 209 PQRAKECFDLY-GVDAIMIGRASFGRPWFFKEVK 241
>gi|329943329|ref|ZP_08292103.1| TIM-barrel , nifR3 family protein [Chlamydophila psittaci Cal10]
gi|384451075|ref|YP_005663675.1| NifR3/Smm1 family protein [Chlamydophila psittaci 6BC]
gi|384452060|ref|YP_005664658.1| dihydrouridine synthase family protein [Chlamydophila psittaci
01DC11]
gi|384453034|ref|YP_005665631.1| dihydrouridine synthase family protein [Chlamydophila psittaci
08DC60]
gi|384454013|ref|YP_005666609.1| dihydrouridine synthase family protein [Chlamydophila psittaci
C19/98]
gi|384454992|ref|YP_005667587.1| dihydrouridine synthase family protein [Chlamydophila psittaci
02DC15]
gi|392377134|ref|YP_004064912.1| putative dihydrouridine synthase [Chlamydophila psittaci RD1]
gi|406592895|ref|YP_006740075.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci CP3]
gi|407458570|ref|YP_006736875.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci WS/RT/E30]
gi|313848477|emb|CBY17481.1| putative dihydrouridine synthase [Chlamydophila psittaci RD1]
gi|328814876|gb|EGF84866.1| TIM-barrel , nifR3 family protein [Chlamydophila psittaci Cal10]
gi|328915169|gb|AEB56002.1| NifR3/Smm1 family protein [Chlamydophila psittaci 6BC]
gi|334692794|gb|AEG86013.1| dihydrouridine synthase family protein [Chlamydophila psittaci
C19/98]
gi|334693770|gb|AEG86988.1| dihydrouridine synthase family protein [Chlamydophila psittaci
01DC11]
gi|334694749|gb|AEG87966.1| dihydrouridine synthase family protein [Chlamydophila psittaci
02DC15]
gi|334695723|gb|AEG88939.1| dihydrouridine synthase family protein [Chlamydophila psittaci
08DC60]
gi|405785469|gb|AFS24215.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci WS/RT/E30]
gi|405788767|gb|AFS27510.1| TIM-barrel , nifR3 family protein [Chlamydia psittaci CP3]
Length = 332
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + ++LE + D +D+N GCP + I K GSGSGLL+ ++ ++
Sbjct: 72 IGGQLCGSKPEMAGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKIL 130
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G +N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 131 EKIIEAVSIPVTVKIRSGWDCNNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 190
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D
Sbjct: 191 IARAKAAAGKD------------------------------------------------L 202
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + + S GV++ RG + PWI ++I+
Sbjct: 203 PVFGNGDIFSPEA-AKLMMDSTQCDGVLVARGTMGAPWIVRQIE 245
>gi|424825602|ref|ZP_18250589.1| putative dihydrouridine synthase [Chlamydophila abortus LLG]
gi|333410701|gb|EGK69688.1| putative dihydrouridine synthase [Chlamydophila abortus LLG]
Length = 339
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P ++ + ++LE + D +D+N GCPI+ I K GSGSGLL+ ++ V+
Sbjct: 72 IGGQLCGSKPEMVGEAAKVLE-GLGFDLIDLNCGCPIDRITKDGSGSGLLKSPELIGKVL 130
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 131 EKIVEAVSVPVTVKIRSGWDGSNINVEETVRIIRDAGASAVFVHGRTRAQGYVGPSNLEY 190
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D +
Sbjct: 191 IARAKAAAGKDFPV---------------------------------------------- 204
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+GNGD+ S E + + S GV++ RG + PWI ++I+
Sbjct: 205 --FGNGDVFSPEA-AKLMLDSTQCDGVLVARGTMGAPWIVRQIE 245
>gi|157736711|ref|YP_001489394.1| tRNA-dihydrouridine synthase [Arcobacter butzleri RM4018]
gi|315635883|ref|ZP_07891145.1| tRNA-dihydrouridine synthase B [Arcobacter butzleri JV22]
gi|384155137|ref|YP_005537952.1| tRNA-dihydrouridine synthase [Arcobacter butzleri ED-1]
gi|157698565|gb|ABV66725.1| probable tRNA-dihydrouridine synthase [Arcobacter butzleri RM4018]
gi|315479862|gb|EFU70533.1| tRNA-dihydrouridine synthase B [Arcobacter butzleri JV22]
gi|345468691|dbj|BAK70142.1| tRNA-dihydrouridine synthase [Arcobacter butzleri ED-1]
Length = 309
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 138/344 (40%), Gaps = 110/344 (31%)
Query: 254 KIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ L L+PL +LPFR + KK+GAD+T SEM + L+ S + ++++ +
Sbjct: 3 KLDFTRPLVVLAPLAGYTDLPFRSVVKKFGADLTISEMISSNALVYKSARTLKMVEKSPT 62
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED PY
Sbjct: 63 ED----------PYF--------------------------------------------- 67
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ GN+ ++ ++L + +D +D+N GCP ++ GSGS LL L+ +++
Sbjct: 68 VQIAGNSVDLVKAAVEILNDVEGIDGIDLNCGCPAPKVFNHGSGSNLLGDLKKLEEILST 127
Query: 433 MNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + S T K R G+++ + I
Sbjct: 128 VKKYSKKQYTSAKVRLGVNEKIPV----------------------------------EI 153
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K + C G +++HGRTR +Y D+D I++ + S P
Sbjct: 154 GKAVEAC-----------------GVDFVSVHGRTRAGKYKAPVDYDAIKQMKEAIS-IP 195
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ NGDI Y E L+ + + +GVMIGRGA+ KPW+F ++K
Sbjct: 196 VIANGDIKDYAKAKEVLEYTKA-NGVMIGRGAIGKPWVFYQLKH 238
>gi|406987835|gb|EKE08045.1| hypothetical protein ACD_17C00375G0001 [uncultured bacterium]
Length = 309
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 53/229 (23%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + +++E + D +D+N GCP++ + K GSGSG+L+ ++ V+
Sbjct: 40 IGAQLCGSKPQIAAEAARMVE-GLGFDVIDLNCGCPVDKVTKDGSGSGMLKTPELIGEVL 98
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ +P+T+K R G WD
Sbjct: 99 AAIVGAVKIPVTIKIRAG---------------------------------------WD- 118
Query: 491 IEKCAQLCSRDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
D +I+ + K + GA I +HGRTR+Q Y A+WDYI++C ++
Sbjct: 119 ----------DQHIVTRQITKIAEEAGAKAIAIHGRTRQQAYKGNANWDYIKECKEVAKD 168
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
+ GNGD+ E + V+I RG + +PWI ++++ L
Sbjct: 169 IQVIGNGDLFDAESALRMFSYT-GCDAVLIARGTMGQPWIAEDVQRALL 216
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 58/230 (25%)
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
CK + C EM L+++ P + ++ G QLCG+ P + + +++E
Sbjct: 3 CKYLPGIVYC-EMVKIDALVRNDPHTFRMLDYELGMHPIGAQLCGSKPQIAAEAARMVE- 60
Query: 338 QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
+ D +D+N GCP++ + K GSGSG+L+ L G
Sbjct: 61 GLGFDVIDLNCGCPVDKVTKDGSGSGMLKTPELIG------------------------- 95
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
+L +++ + +P+T+K R G + +
Sbjct: 96 --------------------------EVLAAIVGAVK----IPVTIKIRAGWDDQHIVTR 125
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
+ GA I +HGRTR+Q Y A+WDYI++C ++ ++D +I N
Sbjct: 126 QITKIAEEAGAKAIAIHGRTRQQAYKGNANWDYIKECKEV-AKDIQVIGN 174
>gi|325954824|ref|YP_004238484.1| hypothetical protein [Weeksella virosa DSM 16922]
gi|323437442|gb|ADX67906.1| TIM-barrel protein, nifR3 family [Weeksella virosa DSM 16922]
Length = 332
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 139/337 (41%), Gaps = 105/337 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ +E + L++ + IK + D+F
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMNGADLMYTEFISSEGLIRDA------IKSRKKLDIFD--- 64
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
EE+ PI G+Q+ G +
Sbjct: 65 ---------------EER------------PI-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ +++E + D VD+N GCP++ + +G+G+G+L+ +++ + + E + LP
Sbjct: 79 EAMAMSAKIVE-TVEPDLVDINFGCPVKKVVCKGAGAGVLKDVDLMVRLTKSVVESTHLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + ++ G + +HGRTR Q Y +DW +I A++ +
Sbjct: 138 VTVKTRLGWDHDSINIDEVAERLQETGIKALAIHGRTRAQMYKGHSDWSHI---ARVKAN 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N I F GNGDI S
Sbjct: 195 PNIEIPIF---------------------------------------------GNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
+ E K+ + G+MIGR A+ PWIF +IK +
Sbjct: 210 PQKAIE-FKEKYGVDGIMIGRAAIGHPWIFNKIKHYR 245
>gi|365153616|ref|ZP_09350055.1| hypothetical protein HMPREF1019_00738 [Campylobacter sp. 10_1_50]
gi|363651628|gb|EHL90686.1| hypothetical protein HMPREF1019_00738 [Campylobacter sp. 10_1_50]
Length = 307
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 143/349 (40%), Gaps = 112/349 (32%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL-KSSPQEWALIKRHES 312
ID+ K L+L+PL +LP R + KK+G D+T SEM A L+ +SS + +IK+ +
Sbjct: 2 IDFSKKPLFLAPLAGFSDLPLRSVVKKFGCDVTVSEMISANALVYESSDKTLEMIKKSPN 61
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED PYV
Sbjct: 62 ED----------PYV--------------------------------------------- 66
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++ + K Q++ + + +D+N GCP+ + +QG+GS LL + LQS+I+
Sbjct: 67 VQIAGSDIENIKKAVQIINKFDGIYGLDLNCGCPVPKVVRQGAGSALLNDLDKLQSIISA 126
Query: 433 MNEVSSL-PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ VS+ ++VK R G + N
Sbjct: 127 IKSVSNKKSLSVKFRLGFNDKNE------------------------------------- 149
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
EK A+ C + GA I +HGRTR Y+ + D++ I + + P
Sbjct: 150 EKIAKAC--------------EEAGADYIAVHGRTRAGGYSAKVDYEAIARV-KASVKIP 194
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ NGDI + ++ E L + +MIGR ++ PWIF EIK K D
Sbjct: 195 VVANGDI-NAQNADEILNLTKC-DALMIGRASIGNPWIFHEIKTKTSVD 241
>gi|313889105|ref|ZP_07822761.1| TIM-barrel protein, nifR3 family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844845|gb|EFR32250.1| TIM-barrel protein, nifR3 family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 308
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 136/333 (40%), Gaps = 109/333 (32%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ ++ FR + + GADIT +EM A L+
Sbjct: 5 LAPMAGYTDIAFREVATEKGADITVTEMVSAMALV------------------------- 39
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
E + +D +D++ + VQ+ G++P V
Sbjct: 40 ------------YENKKTIDLLDIS------------------PKEKKVAVQIFGSDPDV 69
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+ + ++L + +VD+N+GCP I K SGS LL +++ ++ + + S+ P+T
Sbjct: 70 MGQAARILNDYDF-SYVDINMGCPAPKIVKNNSGSHLLSDPSLVYDIVKSVVKNSNKPVT 128
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
K R GI +++ + GA+ +T+HGRTRE+ YT +ADWD+I+
Sbjct: 129 AKVRKGIGGLSSM--KAIKNIEAAGATFVTVHGRTREEYYTGKADWDFIK---------- 176
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
E A + P + GNGD+ S E
Sbjct: 177 --------------------------------------EVKANVKIP--VIGNGDVDSPE 196
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D E + S + G+ IGRGA+ P+IF +I+E
Sbjct: 197 DAIEKINYS-KVDGLAIGRGAIGNPYIFNQIEE 228
>gi|359405483|ref|ZP_09198246.1| TIM-barrel protein, nifR3 family [Prevotella stercorea DSM 18206]
gi|357558580|gb|EHJ40071.1| TIM-barrel protein, nifR3 family [Prevotella stercorea DSM 18206]
Length = 331
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/335 (24%), Positives = 140/335 (41%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++GA + V TE + + AL++ +
Sbjct: 13 LFLAPMEDVTDIGFRHLCKRFGASM------VYTEFVSAE----ALVRSVNT-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L K T EE+ P+ G+Q+ G +
Sbjct: 55 ------TLRKLTISDEER------------PV-------------------GIQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q+ D +D+N GCP++ + +G+G+G+LQ +L + + + + P
Sbjct: 78 ESMVEAAKIVE-QVKPDVIDINFGCPVKKVAGKGAGAGMLQNIPLLLDITREVVKAVNTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + D +I + +D G +T+HGRTR Q YT ADW I + +
Sbjct: 137 VTVKTRLGWNHDQLVICDLAEALQDCGIQALTIHGRTRAQMYTGDADWTLIGEVKR---- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI +
Sbjct: 193 -NPRIH-------------------------------------------IPIIGNGDICT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E ++ + + VM+GR PWIFQE+++
Sbjct: 209 PEQARDAFDRY-GVDAVMVGRATFGCPWIFQEMRD 242
>gi|239626632|ref|ZP_04669663.1| TIM-barrel protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516778|gb|EEQ56644.1| TIM-barrel protein [Clostridiales bacterium 1_7_47FAA]
Length = 328
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 131/333 (39%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR LC++ GA +EM A +L ++ L++ H E +QL
Sbjct: 14 VILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELMQIHPQERPAAIQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++P ++ + +E+ DF+DVN+GCP+ I G GS L++ NP
Sbjct: 74 FGSDPDIMAQIAARIEDG-PYDFIDVNMGCPVPKIVNNGEGSALMK------------NP 120
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K IL +++ + + P
Sbjct: 121 ELAEK---------------------------------------ILSAMVKAVKK----P 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + F G + + +HGRTREQ Y+ +ADWD I
Sbjct: 138 VTVKFRKGFNDTCVNAVEFAKMAEASGVAAVAVHGRTREQYYSGKADWDII--------- 188
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
R K+A P+ GNGDI +
Sbjct: 189 -----------------------------RQVKEA------------VKIPVIGNGDIFT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+D ++++ G+M+ RGA PWIF+ I
Sbjct: 208 PQDAGRMMEET-GCDGIMVARGAKGNPWIFRRI 239
>gi|329925512|ref|ZP_08280386.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. HGF5]
gi|328939795|gb|EGG36135.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. HGF5]
Length = 343
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 136/348 (39%), Gaps = 111/348 (31%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D +KI N E K ++ L+P+ V N FR + K++G + C+EM ++ + +
Sbjct: 2 DQLKIGNVEMKN-----QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKR 56
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
++ FVD
Sbjct: 57 TQEML-----------------------------------FVD----------------- 64
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G + L + +++++Q D +D+N+GCP + K +G+ L
Sbjct: 65 ---EREKPLSLQIFGGDRVSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLD 121
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+N + ++ + + + P+TVK RTG W
Sbjct: 122 SNKIYEMVAAVVDAVNKPVTVKMRTG-----------------W---------------- 148
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+D Y + AQ R G +++HGRTREQ YT ADWD I +
Sbjct: 149 --DSDHIYAVENAQAVERA--------------GGQAVSVHGRTREQLYTGHADWDIIRQ 192
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+ S P+ GNGD+++ ED L + GVMIGRGAL PW+
Sbjct: 193 VKEAVS-IPVIGNGDVVTPEDARRMLDTT-GCDGVMIGRGALGNPWML 238
>gi|153807028|ref|ZP_01959696.1| hypothetical protein BACCAC_01305 [Bacteroides caccae ATCC 43185]
gi|149130148|gb|EDM21358.1| TIM-barrel protein, nifR3 family [Bacteroides caccae ATCC 43185]
Length = 331
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------NISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPQMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEMK 241
>gi|325286202|ref|YP_004261992.1| nifR3 family TIM-barrel protein [Cellulophaga lytica DSM 7489]
gi|324321656|gb|ADY29121.1| TIM-barrel protein, nifR3 family [Cellulophaga lytica DSM 7489]
Length = 330
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 136/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGANL 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E+ D +D+N GCP++ + +G+G+G+L+ +++ + M + + LP
Sbjct: 79 DSMLRSVEIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVKLTDAMVKHTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G + I +HGRTR Q Y ADW I + +
Sbjct: 138 VTVKTRLGWDTDSIKIVEVAERLQDVGCAAIAIHGRTRVQMYKGNADWKPIAQV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E + ++ + G MIGR ++ PW F E+K
Sbjct: 210 PEAAVK-MRDEYGLDGAMIGRASIGYPWFFNEVKH 243
>gi|270283991|ref|ZP_05965366.2| putative tRNA-dihydrouridine synthase [Bifidobacterium gallicum DSM
20093]
gi|270277877|gb|EFA23731.1| putative tRNA-dihydrouridine synthase [Bifidobacterium gallicum DSM
20093]
Length = 422
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 131/336 (38%), Gaps = 104/336 (30%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ LSP+ V N PFR LC+++G D + +EM A L+ +P+ L + SE + +Q
Sbjct: 57 VILSPMAGVTNWPFRVLCEQYGPDGLYVAEMITARALVARNPKALRLCRFAPSERIRSLQ 116
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G NP ++ + +++ ++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 117 LYGVNPSIMEQAAKIVVDEQMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF-------- 168
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
+++ V+ + + +
Sbjct: 169 -------------------------------------------TDVVSRVVRVCD-AAGI 184
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T K R GI ++ H ++ G +TLH RT + Y +DW I + +
Sbjct: 185 PVTAKIRVGIDHEHETFHEAGHIAQEEGCKAVTLHARTTAEYYGGHSDWSRIGELVE--- 241
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
Q D P++GNGDI
Sbjct: 242 ----------------------------------QLD-------------VPVFGNGDIW 254
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D ++++ +GV IGRG +PW+F +IK
Sbjct: 255 GAADALAMVEQT-GCAGVAIGRGCQGRPWLFADIKH 289
>gi|320535329|ref|ZP_08035448.1| TIM-barrel protein, nifR3 family [Treponema phagedenis F0421]
gi|320147829|gb|EFW39326.1| TIM-barrel protein, nifR3 family [Treponema phagedenis F0421]
Length = 334
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 145/350 (41%), Gaps = 98/350 (28%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ +G L+L+P ++ FR + +WGAD T +EM + +++ S + L KR +E
Sbjct: 14 KLQLKGNLFLAPAAGYSDVTFRSVAVEWGADFTYTEMVSSEAMVRDSQKTENLFKRAPNE 73
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ VQ+ G+NP + + + + E+ + +D+N GCP+ I K G+GS L++
Sbjct: 74 QAYAVQIFGSNPNHMAETAKKILEKASPSCIDINAGCPMPKITKTGAGSALMRNP----- 128
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
N Y +TK V D VD NI
Sbjct: 129 ----QNLYTVTKA--------VRDAVDT---------------------VNI-------- 147
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
S+P+TVK R+G + ++ + D GA+ IT+H RT Q Y +ADW + +
Sbjct: 148 ----SVPVTVKIRSGWNTEHLTWKDAAQAAVDAGAAAITIHPRTASQCYGGKADWTILAQ 203
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
AQ+ LH + ++
Sbjct: 204 LAQM------------------------LHPQG-----------------------ISVF 216
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
G+GD+ + ED L+++ VM RGA+ P+IF+ KE L YA
Sbjct: 217 GSGDLFTPEDAKAMLEQT-DCDAVMFARGAMGNPFIFKRTKELLLHGSYA 265
>gi|423219990|ref|ZP_17206486.1| hypothetical protein HMPREF1061_03259 [Bacteroides caccae
CL03T12C61]
gi|392624253|gb|EIY18346.1| hypothetical protein HMPREF1061_03259 [Bacteroides caccae
CL03T12C61]
Length = 331
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + +Q+ G +
Sbjct: 51 ------AVSKTAQKL---------------------------NISDEERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPQMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDRY-GVDAVMIGRASFGRPWIFKEMK 241
>gi|323485860|ref|ZP_08091195.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
gi|323400848|gb|EGA93211.1| hypothetical protein HMPREF9474_02946 [Clostridium symbiosum
WAL-14163]
Length = 319
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 131/339 (38%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + + L+P+ V +LPFR LC++ G + C+EM A LL ++ ++ E E
Sbjct: 8 VELENNVTLAPMAGVTDLPFRLLCREQGCGLMCTEMVSAKALLYNNRNTKPILAVREQER 67
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQL G++P +++ LEE D +DVN+GCP+ I G GS L++
Sbjct: 68 PVAVQLFGSDPDIMSDMALRLEEG-PYDIIDVNMGCPVPKIVNNGEGSALMK-------- 118
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP +L E IL S++ ++
Sbjct: 119 ----NP-------ELAEA--------------------------------ILTSMVKKLH 135
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+TVK R G F G S + +HGRTREQ Y+ +ADWD I
Sbjct: 136 K----PVTVKFRKGFDDSCVNAVEFARMAESCGVSAVAVHGRTREQYYSGKADWDII--- 188
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R K+A P+ G
Sbjct: 189 -----------------------------------RQVKEA------------VKIPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI + +D + + GVM+ RGA PW+F I
Sbjct: 202 NGDIFTPQDAKRMIDLT-GCDGVMVARGAKGNPWLFGRI 239
>gi|403526471|ref|YP_006661358.1| tRNA-dihydrouridine synthase Dus [Arthrobacter sp. Rue61a]
gi|403228898|gb|AFR28320.1| putative tRNA-dihydrouridine synthase Dus [Arthrobacter sp. Rue61a]
Length = 393
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 52/234 (22%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + +EM + L++ +P+ +I E E + VQL
Sbjct: 28 VILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISHDEDEKVRSVQL 87
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 88 YGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF--------- 138
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I+Q+ + ++ +P
Sbjct: 139 ------------------------------------------TSIVQTAVKEASK-GGIP 155
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+T+K R GI +D+ + RD G + + LHGRT Q Y+ QADW I +
Sbjct: 156 LTIKMRKGIDEDHLTYLDAGRIARDAGVAAVALHGRTAAQFYSGQADWSAIARL 209
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 61/229 (26%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P + ++L E+ D +D+N GCP+ + ++G GS L + ++ S++ T
Sbjct: 85 VQLYGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTSIVQT 144
Query: 432 CMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S +P+T+K R GI +D+
Sbjct: 145 AVKEASKGGIPLTIKMRKGIDEDH------------------------------------ 168
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
L D I RD G + + LHGRT Q Y+ QADW I + +
Sbjct: 169 -------LTYLDAGRIA------RDAGVAAVALHGRTAAQFYSGQADWSAIARLREALPD 215
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ V+ GR PW+F +++
Sbjct: 216 IPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGR-----PWLFGDLQ 259
>gi|407769124|ref|ZP_11116501.1| tRNA-dihydrouridine synthase B [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288044|gb|EKF13523.1| tRNA-dihydrouridine synthase B [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 334
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V +LPFR+ +++G + SEM + + + I+RH+ E
Sbjct: 14 VILAPMSGVTDLPFRQQVRQFGGHLVVSEMIASDAMTR--------IQRHQKE------- 58
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+M D C E + VQL G P
Sbjct: 59 ---------------VRKMHGD-------CAAE---------------SPLSVQLAGTEP 81
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++ E++ + +D+N+GCP + + K +GS L++ N+ +I S+P
Sbjct: 82 DEMALAAKMNEDRGAM-IIDINMGCPAKKVTKGYAGSALMRDENLAADIIEATVNAVSVP 140
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R G DN G +++T+HGRTR Q Y ADWD I Q S
Sbjct: 141 VTLKMRLGWDDDNRNAPRLAKIAEGLGIAMLTIHGRTRCQFYKGDADWDAIALVKQAVS- 199
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+ S
Sbjct: 200 -------------------------------------------------IPVIGNGDVNS 210
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ED E LK+S + GVM+GRGA +PW ++
Sbjct: 211 EEDAAELLKRSGA-DGVMVGRGAQGRPWFLAQV 242
>gi|387793003|ref|YP_006258068.1| putative TIM-barrel protein, nifR3 family [Solitalea canadensis DSM
3403]
gi|379655836|gb|AFD08892.1| putative TIM-barrel protein, nifR3 family [Solitalea canadensis DSM
3403]
Length = 329
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 115/251 (45%), Gaps = 59/251 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + LQ+ ++F G+Q+ G+N + + T ++ ++ D +D+N
Sbjct: 42 EFISSEGLIRDAAKSLQKLDIFEYERPIGIQIFGSNIESMREAT-IVATKVEPDLIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+ LLQ + + + + E + LP+TVKTR G + +H +
Sbjct: 101 GCPVKNVACKGAGASLLQDIDKMVKMTKAVVEATHLPVTVKTRLGWDDNTKNVHEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
++ G +T+HGRTR Q Y ADW I R+ NI
Sbjct: 161 QEVGIKALTIHGRTRAQMYKGSADWTMIRD----IKRNPNI------------------- 197
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
P++GNGD+ S E + +K + G+MIGR +
Sbjct: 198 -------------------------EIPIFGNGDVDSAEK-AFAWRKEYEVDGIMIGRAS 231
Query: 584 LIKPWIFQEIK 594
+ PWIF+E+K
Sbjct: 232 IGYPWIFREVK 242
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR +CK+ G D+ +E + L++ + +
Sbjct: 1 MVKIGNIELGEF----PLLLAPMEDVSDPPFRYVCKQNGVDLMYTEFISSEGLIRDAAKS 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ E E G+Q+ G+N + + T ++ ++ D +D+N GCP++ + +G+G+
Sbjct: 57 LQKLDIFEYERPIGIQIFGSNIESMREAT-IVATKVEPDLIDINYGCPVKNVACKGAGAS 115
Query: 364 LLQ 366
LLQ
Sbjct: 116 LLQ 118
>gi|51894293|ref|YP_076984.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863]
gi|51857982|dbj|BAD42140.1| putative transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
Length = 345
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/331 (24%), Positives = 123/331 (37%), Gaps = 105/331 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V N PFRRLCK+ G + +E LL S + +I+ E GVQL
Sbjct: 23 LALAPMAGVTNWPFRRLCKEHGCGLVVTEFVSDKALLYDSKRTREMIRLLPDERPAGVQL 82
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + + + E D +D+N+GCP + K GS LL+
Sbjct: 83 FGADPDTMARAAARVVELEQPDLIDINMGCPAPKVTKGRGGSSLLK-------------- 128
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
E ++ + V ++Q+V + P
Sbjct: 129 ----------EPELAQEIVR-----------------------RVVQAV-------APTP 148
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + + + GA +IT+HGRT+EQ Y+ +ADW I A+ S
Sbjct: 149 VTVKMRIGWDSRSINAVEVAKRVEEAGARMITVHGRTKEQHYSGRADWGVIAAVARAVS- 207
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI
Sbjct: 208 -------------------------------------------------IPVLGNGDIAD 218
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
+ L+ S ++G+ +GRGAL PWIF
Sbjct: 219 PREAEARLRTS-GVAGLAVGRGALGNPWIFS 248
>gi|393718420|ref|ZP_10338347.1| tRNA-dihydrouridine synthase [Sphingomonas echinoides ATCC 14820]
Length = 321
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 129/335 (38%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+T V ++PFR L +++G+ + +EM + ++ + Q H ED +QL
Sbjct: 7 VILAPMTGVTDMPFRTLVRRYGSGLNVTEMVASQAAIRETRQSLQKAAWHPIEDPVSMQL 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G PY + + +L E++ A +D+N+GCP+ + +GS L++ + G
Sbjct: 67 VGCTPYEMGEAAKLSEDRGAA-IIDINMGCPVRKVTNGDAGSALMRDLDTAGA------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I++ V+ E S+P
Sbjct: 119 --------------------------------------------IIKGVV----EAVSVP 130
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R G + +D G L+T+HGRTR Q Y ADW +I +
Sbjct: 131 VTLKMRMGWDHSSLNAPQLAKIAQDLGVKLVTVHGRTRNQMYKGNADWAFIRSV-----K 185
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D I P+ NGDI S
Sbjct: 186 DAVTI---------------------------------------------PVIANGDICS 200
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
ED +L +S + GVMIGRG+ +PW+ ++ E
Sbjct: 201 IEDAEAALDQSGA-DGVMIGRGSYGRPWLLGQVME 234
>gi|300857284|ref|YP_003782268.1| tRNA-dihydrouridine synthase [Clostridium ljungdahlii DSM 13528]
gi|300437399|gb|ADK17166.1| predicted tRNA-dihydrouridine synthase [Clostridium ljungdahlii DSM
13528]
Length = 320
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 51/225 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
GVQ+ G++P ++ K + +D+N+GCP I K G GS L++ +++ ++
Sbjct: 67 LGVQIFGSDPLIMAKVCDFFNCNEDIAIIDINMGCPAPKIVKNGEGSALMKNSSLASQIV 126
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + S+ P+TVK R G DN + +F
Sbjct: 127 KEVKKASAKPVTVKMRIGFDFDNINVVDF------------------------------- 155
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
AQ+ + GA +T+HGRT Q Y A+WD I + + +
Sbjct: 156 ----AQIMEQS--------------GADAVTVHGRTSTQMYNGSANWDIISQVKKKVN-I 196
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ GNGD+ + ED L + GVM+GRG++ PWIF++I E
Sbjct: 197 PVIGNGDVFTAEDAIR-LFNNTGCDGVMVGRGSMGNPWIFKQICE 240
Score = 89.0 bits (219), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 94/233 (40%), Gaps = 55/233 (23%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR LC + T +EM A L S + ++K E GVQ+
Sbjct: 12 VVLAPMAGVTDRAFRELCIEMKCGFTYTEMISAKALFYDSDRTKQMLKVSSIEKPLGVQI 71
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++P ++ K + +D+N+GCP I K G GS L++ ++L
Sbjct: 72 FGSDPLIMAKVCDFFNCNEDIAIIDINMGCPAPKIVKNGEGSALMKNSSL---------- 121
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+Q+++E + + S+ P
Sbjct: 122 -----ASQIVKE----------------------------------------VKKASAKP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+TVK R G DN + +F GA +T+HGRT Q Y A+WD I +
Sbjct: 137 VTVKMRIGFDFDNINVVDFAQIMEQSGADAVTVHGRTSTQMYNGSANWDIISQ 189
>gi|332300620|ref|YP_004442541.1| nifR3 family TIM-barrel protein [Porphyromonas asaccharolytica DSM
20707]
gi|332177683|gb|AEE13373.1| TIM-barrel protein, nifR3 family [Porphyromonas asaccharolytica DSM
20707]
Length = 331
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 130/335 (38%), Gaps = 107/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK++GA + +E A L++ P ++ +E +Q+
Sbjct: 13 LLLAPMEDVSDAPFRLLCKQFGASLVYTEFISADALVRYVPSTMRKMRIDPAERPVAIQI 72
Query: 321 CGNNPYVLTKC-TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G V T C + Q+ D +D+N GCP++ + +G+GSG+L+ +
Sbjct: 73 YGRE--VETMCEAARIACQLEPDLLDLNFGCPVKRVAGKGAGSGMLR------------D 118
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +L + T + +S
Sbjct: 119 PELLLEIT-------------------------------------------AAVVAAASC 135
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVKTR G ++ II P+ + G + +T+HGRTR Y ADW
Sbjct: 136 PVTVKTRLGWDHNSLIITELAPRLQACGIAALTIHGRTRSDMYKGSADW----------- 184
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
TL G R + P+ GNGDI
Sbjct: 185 ---------------------TLIGEVRSNPEIQ----------------IPIIGNGDIT 207
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E+ + + GVM+GR A+ +PWIF E++
Sbjct: 208 TGEEVRHAFDTY-GVDGVMVGRAAIGQPWIFGEMR 241
>gi|409990663|ref|ZP_11274007.1| nifR3 family TIM-barrel protein [Arthrospira platensis str. Paraca]
gi|291568799|dbj|BAI91071.1| hypothetical protein [Arthrospira platensis NIES-39]
gi|409938479|gb|EKN79799.1| nifR3 family TIM-barrel protein [Arthrospira platensis str. Paraca]
Length = 338
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 100/223 (44%), Gaps = 52/223 (23%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
+QL P L + + E+ D +DVN+GCP+ I K G GS LL++ I + ++
Sbjct: 85 ISIQLFDCRPDFLVEAARKAVEEGA-DTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIV 143
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+NE S+PITVKTR G D I +F + D GA ++T+HGRTR Q YT +A+W++
Sbjct: 144 RSLNEAVSVPITVKTRLGWDDDEINILDFSKRMEDAGAQMLTIHGRTRAQGYTGKANWEW 203
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + Q S
Sbjct: 204 IARVKQSLS--------------------------------------------------I 213
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGDI+S + L+++ + GVM RG L P++ EI
Sbjct: 214 PVIANGDIVSVSSAVQCLQETGA-DGVMCSRGTLGYPFLVGEI 255
>gi|325972614|ref|YP_004248805.1| hypothetical protein [Sphaerochaeta globus str. Buddy]
gi|324027852|gb|ADY14611.1| TIM-barrel protein, nifR3 family [Sphaerochaeta globus str. Buddy]
Length = 332
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 131/342 (38%), Gaps = 106/342 (30%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ G L+L+PL ++PFR LC + GAD T +EM A L + + L+ R +E
Sbjct: 15 VHTTGNLFLAPLAGYTDIPFRTLCIEHGADFTFTEMVSAEGLSREGEKTMELMYRAPNEK 74
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAV--DFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
+ +QL +N L Q LE+ + + +D+N GCP+ + K G+GS +++
Sbjct: 75 QYAIQLFMSNTDSL---KQALEQLLPFHPEVIDINCGCPVPKVTKTGAGSAMMK------ 125
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
P ++T + + + VD+
Sbjct: 126 ------TPSLITDVVRTITAE-----VDI------------------------------- 143
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
P++VK RTG + F D GAS +TLH RTR Q Y ADW +
Sbjct: 144 -------PVSVKFRTGWDAQSENFLEFAQAALDGGASALTLHARTRSQGYAPFADWSKLR 196
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
Q C HG T P+
Sbjct: 197 ALKQYC----------------------LTHGYT-----------------------VPV 211
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+G+GD+ ED L+++ I VM RGA+ P+IF + K
Sbjct: 212 FGSGDLFIAEDAIRMLQET-GIDAVMFARGAIGNPFIFSQAK 252
>gi|338734227|ref|YP_004672700.1| putative tRNA-dihydrouridine synthase 1 [Simkania negevensis Z]
gi|336483610|emb|CCB90209.1| putative tRNA-dihydrouridine synthase 1 [Simkania negevensis Z]
Length = 334
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 51/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + +++E+ + D VD+N GCP++ + K GSGSG+L+ ++ VI
Sbjct: 73 IGAQLCGSKPELAGPTARIIED-LGFDVVDLNCGCPVDKVTKDGSGSGMLKNPQLIGEVI 131
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ M +P+TVK R G +D+ + GA+ I +HGRTR Q+YT +ADWD
Sbjct: 132 SNMVAAVKIPVTVKIRAGWDQDSLNAPEITRIAEEAGATAIAIHGRTRVQKYTGKADWDI 191
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I +C ++ I
Sbjct: 192 IRQCKEVAKSIYVI---------------------------------------------- 205
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGD+ S +D ++S ++ RG + +PWI +++K
Sbjct: 206 ---GNGDVFSAQDGLALFEQS-GCDAILASRGTMGQPWIAEDVK 245
Score = 78.6 bits (192), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 66/126 (52%), Gaps = 1/126 (0%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+K + K + ++ SPL + PFR++ +G + EM L++ P + +
Sbjct: 4 VKPIKFKSLILPSNVFYSPLAGCSDFPFRQMASLYGVGLMYCEMVKMDALIRHEPSTYHI 63
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+ +S G QLCG+ P + +++E+ + D VD+N GCP++ + K GSGSG+L+
Sbjct: 64 LDYRDSMRPIGAQLCGSKPELAGPTARIIED-LGFDVVDLNCGCPVDKVTKDGSGSGMLK 122
Query: 367 RANLFG 372
L G
Sbjct: 123 NPQLIG 128
>gi|119963532|ref|YP_947259.1| IMP dehydrogenase/GMP reductase domain-containing protein
[Arthrobacter aurescens TC1]
gi|119950391|gb|ABM09302.1| putative IMP dehydrogenase / GMP reductase domain protein
[Arthrobacter aurescens TC1]
Length = 401
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 52/234 (22%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + +EM + L++ +P+ +I E E + VQL
Sbjct: 36 VILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISHDEDEKVRSVQL 95
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 96 YGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF--------- 146
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I+Q+ + ++ +P
Sbjct: 147 ------------------------------------------TSIVQTAVKEASK-GGIP 163
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+T+K R GI +D+ + RD G + + LHGRT Q Y+ QADW I +
Sbjct: 164 LTIKMRKGIDEDHLTYLDAGRIARDAGVAAVALHGRTAAQFYSGQADWSAIARL 217
Score = 85.9 bits (211), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 61/229 (26%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P + ++L E+ D +D+N GCP+ + ++G GS L + ++ S++ T
Sbjct: 93 VQLYGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTSIVQT 152
Query: 432 CMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S +P+T+K R GI +D+
Sbjct: 153 AVKEASKGGIPLTIKMRKGIDEDH------------------------------------ 176
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
L D I RD G + + LHGRT Q Y+ QADW I + +
Sbjct: 177 -------LTYLDAGRIA------RDAGVAAVALHGRTAAQFYSGQADWSAIARLREALPD 223
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ V+ GR PW+F +++
Sbjct: 224 IPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGR-----PWLFGDLQ 267
>gi|325002690|ref|ZP_08123802.1| dihydrouridine synthase TIM-barrel protein nifR3 [Pseudonocardia
sp. P1]
Length = 394
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 56/226 (24%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G +P + + Q++ E+ + D +D+N GCP+ + ++G G+ L + + + +++
Sbjct: 94 MQLYGVDPDSMRRAAQMIVERDLADHIDMNFGCPVPKVTRRGGGAALPFKRKLFERIVSA 153
Query: 433 MNE-VSSLPITVKTRTGIHKDNNIIHNFMPKFR---DWGASLITLHGRTREQRYTKQADW 488
E P+TVK R GI D+ H ++ R D GA + LH RT QRY+ QADW
Sbjct: 154 AVEGAGDRPVTVKMRIGIDDDH---HTYLDAARIAVDSGAVAVALHARTASQRYSGQADW 210
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
D I R RE + +
Sbjct: 211 DAIS--------------------------------RLRE----------------HVPA 222
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDI S +D + + ++ GV++GRG L +PW+F +++
Sbjct: 223 HVPVLGNGDIFSAQDALDMVART-GCDGVVVGRGCLGRPWLFGDLE 267
Score = 72.0 bits (175), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC++ GA EM A L++ +P + +I E +QL
Sbjct: 37 VVLAPMAGITNPGFRRLCREQGAGYYVCEMITARGLVEKNPLTFRMIAFDADEHPRSMQL 96
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF------GVQ 374
G +P + + Q++ E+ D +D+N GCP+ + ++G G+ L + LF V+
Sbjct: 97 YGVDPDSMRRAAQMIVERDLADHIDMNFGCPVPKVTRRGGGAALPFKRKLFERIVSAAVE 156
Query: 375 LCGNNPYVL 383
G+ P +
Sbjct: 157 GAGDRPVTV 165
>gi|329934687|ref|ZP_08284728.1| tRNA dihydrouridine synthase B [Streptomyces griseoaurantiacus
M045]
gi|329305509|gb|EGG49365.1| tRNA dihydrouridine synthase B [Streptomyces griseoaurantiacus
M045]
Length = 380
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 133/335 (39%), Gaps = 106/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM L++ + + LI+ SE +
Sbjct: 19 VVLAPMAGITNAPFRTLCREFSAGKGLYVSEMITTRALVERNDKTMQLIRFDASEKPRSI 78
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
QL G +P + K +++ E+ D +D+N GCP+ + ++G GS L + NL
Sbjct: 79 QLYGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLL------- 131
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+L E + SG+G
Sbjct: 132 --------RSILREAV--------------------SGAG-------------------D 144
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
LP+T+K R GI +D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 145 LPVTMKMRKGIDEDHLTYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR----- 199
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ +P+ P+ GNGDI
Sbjct: 200 ------LKEHVPEI--------------------------------------PVLGNGDI 215
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S ED ++++ GV++GRG L +PW+F ++
Sbjct: 216 WSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 249
>gi|148238900|ref|YP_001224287.1| tRNA-dihydrouridine synthase [Synechococcus sp. WH 7803]
gi|147847439|emb|CAK22990.1| Probable tRNA-dihydrouridine synthase [Synechococcus sp. WH 7803]
Length = 338
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/254 (27%), Positives = 111/254 (43%), Gaps = 46/254 (18%)
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
A+ F ++ +E + +G L Q A GVQL + P + + E +
Sbjct: 48 ALLFTEMVNATSLELGHGRGKVEELQQEAGPIGVQLFDHRPEAMADAARRAEAAGAF-LI 106
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
D+N+GCP+ I ++G GSGL++ ++ S++ + +P+TVKTR G D N
Sbjct: 107 DINMGCPVRKIARKGGGSGLIRDPDLACSIVEAVVAAVGIPVTVKTRLGWCSDPQTADN- 165
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+ DW C R GA L
Sbjct: 166 ----------------------HAAAMDW---------CRR-----------LEAAGAQL 183
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
+TLHGRTREQR++ +A+W+ I + P+ NGD+ S ED L+ + GVM+
Sbjct: 184 LTLHGRTREQRFSGRANWEAIAAVKRTLR-IPVIANGDVFSPEDARACLEIT-GADGVMV 241
Query: 580 GRGALIKPWIFQEI 593
GRG + PW+ +I
Sbjct: 242 GRGTMGAPWLVGQI 255
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 102/246 (41%), Gaps = 78/246 (31%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDL--- 315
++ SPL V + FR L ++W D + +EM AT L R + E+L
Sbjct: 23 RVLQSPLAGVSDKIFRALVRRWSLDALLFTEMVNATSLELGH-------GRGKVEELQQE 75
Query: 316 ---FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
GVQL + P + + E A +D+N+GCP+ I ++G GSGL++
Sbjct: 76 AGPIGVQLFDHRPEAMADAARRAEAAGAF-LIDINMGCPVRKIARKGGGSGLIR------ 128
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
D +L C +I+++V+
Sbjct: 129 ---------------------------DPDLAC------------------SIVEAVVAA 143
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW-------GASLITLHGRTREQRYTKQ 485
+ +P+TVKTR G D N DW GA L+TLHGRTREQR++ +
Sbjct: 144 VG----IPVTVKTRLGWCSDPQTADNHAAAM-DWCRRLEAAGAQLLTLHGRTREQRFSGR 198
Query: 486 ADWDYI 491
A+W+ I
Sbjct: 199 ANWEAI 204
>gi|408671988|ref|YP_006871736.1| TIM-barrel protein, nifR3 family [Emticicia oligotrophica DSM
17448]
gi|387853612|gb|AFK01709.1| TIM-barrel protein, nifR3 family [Emticicia oligotrophica DSM
17448]
Length = 342
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 117/254 (46%), Gaps = 65/254 (25%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + + +Q+ ++F G+QL G++ + +C+++ E D +D+N
Sbjct: 42 EFISSEGLIRNAAKSVQKLDIFEYERPIGIQLFGSDVETMGECSRIATEARP-DLIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+ LLQ + + + + + LP+TVKTR G + + I +
Sbjct: 101 GCPVKNVACRGAGAALLQDIPKMAEMTASVVKNTHLPVTVKTRLGWNDETKNIEEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G +T+HGRTR Q Y +ADW I K ++N P+ +
Sbjct: 161 QDVGIQALTVHGRTRAQMYKGEADWTLIAKI-----KEN-------PRIK---------- 198
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE---DYTESLKKSPSISGVMIG 580
P++GNGDI S E DY + G+MIG
Sbjct: 199 --------------------------IPIFGNGDIDSPEKALDYRNRF----GVDGIMIG 228
Query: 581 RGALIKPWIFQEIK 594
R A+ PWIF EIK
Sbjct: 229 RAAIGYPWIFNEIK 242
Score = 68.9 bits (167), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++++ + + E E G+QL
Sbjct: 14 LLLAPMEDVSDPPFRLVCKENGADMMYTEFISSEGLIRNAAKSVQKLDIFEYERPIGIQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G++ + +C+++ E D +D+N GCP++ + +G+G+ LLQ
Sbjct: 74 FGSDVETMGECSRIATEARP-DLIDINYGCPVKNVACRGAGAALLQ 118
>gi|399527233|ref|ZP_10766956.1| TIM-barrel protein, nifR3 family [Actinomyces sp. ICM39]
gi|398362188|gb|EJN45894.1| TIM-barrel protein, nifR3 family [Actinomyces sp. ICM39]
Length = 430
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 145/359 (40%), Gaps = 94/359 (26%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++PFRRLC+ G E + L + WA ES G +
Sbjct: 10 VVLAPMAGVTDVPFRRLCRIMG------ESGLPDHLRPTGIPSWAA----ES----GREA 55
Query: 321 CGNNPYVLTKCTQ----LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR--------- 367
++P + T ++A+ VD G ++ + + L++
Sbjct: 56 TASSPSTPGETTAGEPLAAPHRVAIPRVDAPAGL---YVTEMVTSRALVEENERTLEMVR 112
Query: 368 ----ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR- 422
+ +QL G NP V+ K +L + + D +D+N GCP+ + K+G G+ L +
Sbjct: 113 PDPAERVRSLQLYGVNPAVMAKAATMLVVRDLTDHIDLNFGCPVPKVTKKGGGAALPWKR 172
Query: 423 ---ANILQSVITCMNEVSS-----LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
++++ +V+ +E +P+TVK R GI ++ + + GA+ +TLH
Sbjct: 173 DLFSDLVGAVVRACDEAGERAGREIPVTVKIRIGIDSEHETATDAALAAQKLGAAALTLH 232
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
RT+ Q Y QA WD I + L
Sbjct: 233 ARTQNQHYAGQAHWDEIARLKDLLD----------------------------------- 257
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P++GNGD+ D L+++ G+ +GRGA +PWIF++I
Sbjct: 258 ---------------IPVFGNGDVFEAADALAMLERT-GCDGISVGRGAQGRPWIFRDI 300
>gi|406997929|gb|EKE15919.1| hypothetical protein ACD_11C00076G0012 [uncultured bacterium]
Length = 318
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 54/226 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
Q+ G NP + K ++L+ E + D VD+N+GCP + I KQG+GSGL++ + + + +I
Sbjct: 74 AQIFGANPENIEKASRLVRE-LGYDGVDINMGCPDKNIIKQGAGSGLIKNSQLAREIIRA 132
Query: 433 MNE-VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +P++VKTR G +K N + +++P+ + + +HGRTR++ ADWD I
Sbjct: 133 AKKGAGDIPVSVKTRIGFNK--NEVESWIPEILSEKPACLVIHGRTRKELSAVDADWDVI 190
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++ A++ R+ G ++
Sbjct: 191 KRVAEMG--------------REAGVLVV------------------------------- 205
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
GNGD+ + ED E +K + G+M+GRG +PW F+ KEKK
Sbjct: 206 --GNGDVKTLEDGMEKAEKF-GVDGIMVGRGVFGQPWFFE--KEKK 246
>gi|253580949|ref|ZP_04858211.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847791|gb|EES75759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 321
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 128/333 (38%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+P+ V +LPFR LCK+ GA + C EM A + + AL++ E +QL
Sbjct: 16 FVLAPMAGVTDLPFRTLCKEQGAGLICMEMISAKAISFHNKNTIALMEIDPCEHPVSMQL 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P ++ + + +E++ D +D+N+GCP+ + G GS LL+ NL
Sbjct: 76 FGSEPDLMAEVAKSIEDR-DFDILDINMGCPVPKVVNNGEGSALLKNPNL---------- 124
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
IE I ++ S + S P
Sbjct: 125 --------------------------IEEIVRKVSSA-------------------ISKP 139
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + I + D GA+ + +HGRTR+Q Y+ ADWD I + +
Sbjct: 140 LTVKVRIGFENEPVDIVEIAKRIEDAGAAALAVHGRTRQQYYSGTADWDTIRRVKE---- 195
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
IT+ P+ GNGD+ S
Sbjct: 196 ------------------AITI----------------------------PVIGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
E+L K VM+GR PW+F+E+
Sbjct: 210 PLK-AEALVKQTGCDAVMVGRAVRGNPWLFREL 241
>gi|331003606|ref|ZP_08327102.1| hypothetical protein HMPREF0491_01964 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412326|gb|EGG91718.1| hypothetical protein HMPREF0491_01964 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 320
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/351 (24%), Positives = 134/351 (38%), Gaps = 107/351 (30%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
+K+K + I+ +G L L P+ V +LPFRRLCK+ GA + +EM A + +
Sbjct: 1 MKLKGFKIGNINIEGGLCLGPMAGVSDLPFRRLCKEMGASLLVTEMVSAKAIYFKNKNTE 60
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
L+K + E +QL G++P ++ +E + D D N+GCP+ I G GS L
Sbjct: 61 PLMKIDKDEHPVALQLFGSDPDIIALMAAQIENR-DFDIFDFNMGCPVPKIVNNGEGSAL 119
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
++ NP +L+EE
Sbjct: 120 MK------------NP-------KLVEE-------------------------------- 128
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
IL ++ + + P+T+K R G ++DN G S I +H RTREQ Y+
Sbjct: 129 ILSKLVKSVKK----PVTLKIRKGFNEDNINAVEIAKIAEASGVSAIAVHARTREQYYSG 184
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
+ADW I K
Sbjct: 185 KADWSII--------------------------------------------------KAV 194
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ P+ GNGD+ + E + + G+MI R A PWIF+EI++
Sbjct: 195 KSAVNIPVIGNGDVKDGKS-AEEMYEYTGCDGIMIARAARGNPWIFREIRD 244
>gi|126701180|ref|YP_001090077.1| transfer RNA-dihydrouridine synthase [Clostridium difficile 630]
gi|254977180|ref|ZP_05273652.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-66c26]
gi|255094510|ref|ZP_05323988.1| tRNA-dihydrouridine synthase [Clostridium difficile CIP 107932]
gi|255102766|ref|ZP_05331743.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-63q42]
gi|255308587|ref|ZP_05352758.1| tRNA-dihydrouridine synthase [Clostridium difficile ATCC 43255]
gi|255316261|ref|ZP_05357844.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-76w55]
gi|255518922|ref|ZP_05386598.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-97b34]
gi|255652101|ref|ZP_05399003.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-37x79]
gi|260685074|ref|YP_003216359.1| tRNA-dihydrouridine synthase [Clostridium difficile CD196]
gi|260688732|ref|YP_003219866.1| tRNA-dihydrouridine synthase [Clostridium difficile R20291]
gi|306521835|ref|ZP_07408182.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-32g58]
gi|384362750|ref|YP_006200602.1| tRNA-dihydrouridine synthase [Clostridium difficile BI1]
gi|423089075|ref|ZP_17077441.1| TIM-barrel protein, nifR3 family [Clostridium difficile
70-100-2010]
gi|115252617|emb|CAJ70460.1| transfer RNA-dihydrouridine synthase [Clostridium difficile 630]
gi|260211237|emb|CBA66759.1| tRNA-dihydrouridine synthase [Clostridium difficile CD196]
gi|260214749|emb|CBE07441.1| tRNA-dihydrouridine synthase [Clostridium difficile R20291]
gi|357558750|gb|EHJ40230.1| TIM-barrel protein, nifR3 family [Clostridium difficile
70-100-2010]
Length = 322
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 136/340 (40%), Gaps = 109/340 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + K++LSP+ V +LPFR +CK+ G + +EM L ++K E E
Sbjct: 6 LELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKIEEEEH 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQ+ G+ P + + +++ + + + +D+N+GCP + K G GS L++
Sbjct: 66 PVAVQIFGSEPEFMGRAAEIMND-YSNEILDINMGCPAPKVVKNGDGSALMK-------- 116
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP +L EE +L++V+
Sbjct: 117 ----NP-------KLAEE--------------------------------VLRAVVKN-- 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEK 493
S P+T+K R G DN++ + K D G S + +HGRTREQ YT +ADWD I +
Sbjct: 132 --SKKPVTLKIRKG-WDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGKADWDIIAE 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 189 IKKNLS--------------------------------------------------IPVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ + ED L K+ +MIGRGA PWIF+ I
Sbjct: 199 GNGDVFTIEDSINMLDKT-GCDAIMIGRGAQGNPWIFKRI 237
>gi|403738053|ref|ZP_10950781.1| putative tRNA-dihydrouridine synthase [Austwickia chelonae NBRC
105200]
gi|403192165|dbj|GAB77551.1| putative tRNA-dihydrouridine synthase [Austwickia chelonae NBRC
105200]
Length = 395
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 53/224 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G +P + ++L E+ D VD+N GCP+ + ++G GS L + N+ + +++
Sbjct: 87 VQLYGVDPATVRAAVRMLVEEDRADHVDLNFGCPVPKVTRKGGGSALPWKTNLFRQIVSA 146
Query: 433 MNEVSS---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
E ++ +P+TVK R GI D+
Sbjct: 147 AVEEATQGGIPVTVKMRKGIDADH----------------------------------LT 172
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
Y+E A++ D G + I LHGRT + Y+ +ADW I + +
Sbjct: 173 YLE-AARVAE--------------DEGVAAIALHGRTAAELYSGRADWSAIARLKETVKS 217
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDI S ED E + S GV++GRG L +PW+F ++
Sbjct: 218 IPVLGNGDIWSAEDAVEMI-ASTGCDGVVVGRGCLGRPWLFADL 260
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW-----GAD----ITCSEMAVATELLKSSPQEWALIKRHE 311
+ L+P+ + N FRRLC++ G D + SEM + L++ +P +I
Sbjct: 21 VVLAPMAGITNRAFRRLCREAVSAVPGLDAAGCLYVSEMITSRALVERTPMSLRMITHDP 80
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
E VQL G +P + ++L E+ D VD+N GCP+ + ++G GS L + NLF
Sbjct: 81 DESPRSVQLYGVDPATVRAAVRMLVEEDRADHVDLNFGCPVPKVTRKGGGSALPWKTNLF 140
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVD--VNLGCPIEFIYKQGSGSGLLQRANILQSV 429
Q+V V+ G P+
Sbjct: 141 --------------------RQIVSAAVEEATQGGIPV---------------------- 158
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
TVK R GI D+ D G + I LHGRT + Y+ +ADW
Sbjct: 159 ------------TVKMRKGIDADHLTYLEAARVAEDEGVAAIALHGRTAAELYSGRADWS 206
Query: 490 YIEK 493
I +
Sbjct: 207 AIAR 210
>gi|373486891|ref|ZP_09577562.1| tRNA-U20-dihydrouridine synthase [Holophaga foetida DSM 6591]
gi|372010844|gb|EHP11447.1| tRNA-U20-dihydrouridine synthase [Holophaga foetida DSM 6591]
Length = 331
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 139/348 (39%), Gaps = 111/348 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESE 313
++ + L L+PL + +LPFRR+ ++ G +T SEM A L + + + ++ E E
Sbjct: 13 VEVKPALVLAPLHEITDLPFRRMIREIGGLGLTVSEMISAEALWRQARKAKEMMA-SEGE 71
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
F +QL G P L +CT++ EE A D VD+N+GCP + G+GS LL+
Sbjct: 72 RPFAMQLAGYIPEHLAECTRMCEEAGA-DLVDLNMGCPASNVTSGGAGSALLR------- 123
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
DF + + + M
Sbjct: 124 -----------------------DF-------------------------RLAERCVQAM 135
Query: 434 NEVSSLPITVKTRTG---IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ +P+TVK R G K+ +F+ F G +T+H RTR Q+Y +DW
Sbjct: 136 VKAVKIPVTVKMRVGWDAAQKERGEYQDFLRMFEACGVQAVTIHPRTRVQQYLGHSDWSL 195
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + ++ G S
Sbjct: 196 IARAVEM------------------GLSF------------------------------- 206
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
P+ GNGD+ E+ + ++++ +GVMIGRGA+ P++F++I + L
Sbjct: 207 PIIGNGDVNRPEEAHQMVRET-GCAGVMIGRGAMYNPFLFKQILDPDL 253
>gi|429197733|ref|ZP_19189610.1| TIM-barrel protein, nifR3 family [Streptomyces ipomoeae 91-03]
gi|428666569|gb|EKX65715.1| TIM-barrel protein, nifR3 family [Streptomyces ipomoeae 91-03]
Length = 388
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 16 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 61
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 62 --------------KTMQL-----------------IHFDATEKPRS----------IQL 80
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 81 YGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVS 140
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 141 GAGDLPVTMKMRKGIDDDHITYLDAGRIAAEEGVTAIALHGRTAAQHYGGTADWDAIAR- 199
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 200 ----------LKEHVPEI--------------------------------------PVLG 211
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 212 NGDIWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 249
>gi|425734759|ref|ZP_18853076.1| tRNA -dihydrouridine synthase [Brevibacterium casei S18]
gi|425480695|gb|EKU47859.1| tRNA -dihydrouridine synthase [Brevibacterium casei S18]
Length = 387
Score = 102 bits (254), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/339 (22%), Positives = 129/339 (38%), Gaps = 101/339 (29%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P+ + N FRRLC+++GA + +EM + L++ SP+ +I E
Sbjct: 17 IELSSPVVLAPMAGITNTAFRRLCREYGAGLYVTEMVTSRALVERSPKSMRIIHHEPYET 76
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQL G +P + + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 77 PRSVQLYGVDPVTIGQAVRMLVEEDRADHIDLNFGCPVPKVTRKGGGSALPWKQDLFTA- 135
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
++T + + G P+ ++G
Sbjct: 136 -------IVTTAVREADRG----------GIPLTVKMRKG-------------------- 158
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
I D++ + R+ G + I LHGRT Y+ ADW+ I +
Sbjct: 159 --------------IDADHHTYLDAGETARNAGVAAIALHGRTTADLYSGTADWESIARL 204
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
L P+ G
Sbjct: 205 KD------------------------------------------------HLGDSVPVLG 216
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S ED E + ++ GV+IGRG +PW+F ++
Sbjct: 217 NGDIFSAEDALEMMART-GCDGVVIGRGCQGRPWLFGDL 254
>gi|282880523|ref|ZP_06289230.1| TIM-barrel protein, nifR3 family [Prevotella timonensis CRIS 5C-B1]
gi|281305626|gb|EFA97679.1| TIM-barrel protein, nifR3 family [Prevotella timonensis CRIS 5C-B1]
Length = 327
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR LCK++G + +E V+ E AL++ +S
Sbjct: 13 LFLAPMEDVTDIGFRLLCKRFGVSMVYTEF-VSAE---------ALVRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ K T EE+ P+ G+Q+ G +
Sbjct: 55 ------TVNKLTICEEER------------PV-------------------GIQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + Q++ Q D +D+N GCP++ + +G+G+G+LQ ++ + + + +P
Sbjct: 78 ASMVEAAQIVA-QSKPDVIDLNFGCPVKKVAGKGAGAGMLQNIPLMLEITREVVKAVHIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + II + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDASHLIITELAEQLQDCGIQALTIHGRTRSQMYTGKADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGDI S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E+ + ++ + GVM+GR + PWIF+E++
Sbjct: 209 AEEAKHAF-ETYGVDGVMVGRASFGCPWIFKEMR 241
>gi|305665851|ref|YP_003862138.1| putative TIM-barrel enzyme, putative dehydrogenase [Maribacter sp.
HTCC2170]
gi|88710622|gb|EAR02854.1| putative TIM-barrel enzyme, possible dehydrogenase [Maribacter sp.
HTCC2170]
Length = 332
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 134/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDAAKSVMKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G N + + +++E D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGANLDSMLRSVEIVEASNP-DIIDINFGCPVKKVVSKGAGAGILKDIDL---------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ T+ + E + LP
Sbjct: 123 --MVSLTKAMVEH-------------------------------------------TKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +++ I + +D G I++HGRTR Q Y +A+W I + +
Sbjct: 138 VTVKTRLGWDQESIKIVEVAERLQDVGCKAISIHGRTRVQMYKGEANWVPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ S
Sbjct: 193 NNQRMH-------------------------------------------IPVFGNGDVDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PEAAMR-MRDEFGLDGAMIGRASIGYPWFFNEVK 242
>gi|34539899|ref|NP_904378.1| NifR3 family TIM-barrel protein [Porphyromonas gingivalis W83]
gi|419970900|ref|ZP_14486371.1| TIM-barrel protein, nifR3 family [Porphyromonas gingivalis W50]
gi|34396210|gb|AAQ65277.1| TIM-barrel protein, putative, NifR3 family [Porphyromonas
gingivalis W83]
gi|392609773|gb|EIW92575.1| TIM-barrel protein, nifR3 family [Porphyromonas gingivalis W50]
Length = 333
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V ++ FR +CK++GAD+ SE A L++ Q+
Sbjct: 13 LLLAPMEDVTDVAFRIMCKQFGADLVYSEFLSADALIR--------------------QV 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +MA+D + VQ+ G +
Sbjct: 53 AGTF------------RKMAID-----------------------ESERPMAVQIYGRDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +L E + +D+N GCP++ + +G+GSG+L+ ++ + + + LP
Sbjct: 78 ASMVEAARLCESAGP-NLIDLNFGCPVKRVAGKGAGSGMLRNIPLMIEITREVVKAVKLP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + +T+HGRTR Q YT ADW I +
Sbjct: 137 VTVKTRLGWDNDSKIIVDLAEQLQDCGIAALTIHGRTRAQMYTGTADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P+ GNGD+ +
Sbjct: 191 KNN------PRMQ------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++ + + VM+GR ++ +PWIF+++K
Sbjct: 209 PQEARRAFDVY-GVDAVMVGRASIGQPWIFEDMK 241
>gi|32266316|ref|NP_860348.1| hypothetical protein HH0817 [Helicobacter hepaticus ATCC 51449]
gi|32262366|gb|AAP77414.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 328
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 133/354 (37%), Gaps = 109/354 (30%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I++ L L+PL +LPFR + K +G DIT SEM + L+ ++ + +I++ E
Sbjct: 2 IEFNNLLMLAPLAGYTDLPFRSVVKSFGVDITVSEMISSHALVYNNARTLKMIEKSPEEQ 61
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ VQ+ G+ V+ K ++L Q +D +D+N GCP + G+GSGLL+ +L
Sbjct: 62 PYSVQISGSKEEVIKKAVEILNAQGGIDVIDLNCGCPAPKVANHGNGSGLLKDLHL---- 117
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L K L++++ +
Sbjct: 118 --------LVKIANLIKDRATTPYT----------------------------------- 134
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ-ADWDYIEK 493
++K R G D I + +D + + +HGRTR Y K+ D+D I
Sbjct: 135 -------SLKVRLGF--DKKIPNEIAQALKDVRSDFVVVHGRTRADGYKKERIDYDAIAH 185
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
Q S PL
Sbjct: 186 IKQHIS--------------------------------------------------MPLI 195
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVWK 607
NG+I S D + + +GVMIGR A+ PWIF +IK DI IV K
Sbjct: 196 ANGEIDSV-DKAQKVFSHTGANGVMIGRAAITSPWIFWQIKNHT-HDIPPIVKK 247
>gi|261403946|ref|YP_003240187.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. Y412MC10]
gi|261280409|gb|ACX62380.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. Y412MC10]
Length = 343
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 136/348 (39%), Gaps = 111/348 (31%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D +KI N E K ++ L+P+ V N FR + K++G + C+EM ++ + +
Sbjct: 2 DQLKIGNVEMKN-----QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVHGNKR 56
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
++ FVD
Sbjct: 57 TQEML-----------------------------------FVD----------------- 64
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G + L + +++++Q D +D+N+GCP + K +G+ L
Sbjct: 65 ---EREKPLSLQIFGGDRVSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLD 121
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+N + ++ + + + P+TVK RTG W
Sbjct: 122 SNKIYEMVAAVVDAVNKPVTVKMRTG-----------------W---------------- 148
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+D Y + AQ R G +++HGRTR+Q YT ADWD I +
Sbjct: 149 --DSDHIYAVENAQAVERA--------------GGQAVSVHGRTRDQLYTGHADWDIIRQ 192
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+ S P+ GNGD+++ ED L + GVMIGRGAL PW+
Sbjct: 193 VKEAVS-IPVIGNGDVVTPEDARRMLDTT-GCDGVMIGRGALGNPWML 238
>gi|407775009|ref|ZP_11122305.1| tRNA-dihydrouridine synthase B [Thalassospira profundimaris WP0211]
gi|407281957|gb|EKF07517.1| tRNA-dihydrouridine synthase B [Thalassospira profundimaris WP0211]
Length = 336
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 129/333 (38%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P++ V +LPFR+ +++G + SEM + + + I+RHE E
Sbjct: 14 VVLAPMSGVTDLPFRQQVRQFGGHLVVSEMIASDAMTR--------IQRHEKE------- 58
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+M D C E + VQL G P
Sbjct: 59 ---------------VRKMHGD-------CAAE---------------SPLSVQLAGTEP 81
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++ E + + +D+N+GCP + + K +GS L++ + +I + S+P
Sbjct: 82 EEMAEAAKMNEARGAM-IIDINMGCPAKKVTKGYAGSALMRDEKLAADIIKATVDAVSVP 140
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R G DN D G +++T+HGRTR Q Y ADWD I S
Sbjct: 141 VTLKMRLGWDDDNRNAPKLARIAEDLGIAMLTIHGRTRCQFYKGDADWDAIALVKDAVS- 199
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+ S
Sbjct: 200 -------------------------------------------------IPVLGNGDVNS 210
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ED E L++S + GVMIGRGA +PW ++
Sbjct: 211 EEDAKELLERSGA-DGVMIGRGAQGRPWFLAQV 242
>gi|189501100|ref|YP_001960570.1| nifR3 family TIM-barrel protein [Chlorobium phaeobacteroides BS1]
gi|189496541|gb|ACE05089.1| TIM-barrel protein, nifR3 family [Chlorobium phaeobacteroides BS1]
Length = 346
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 139/341 (40%), Gaps = 107/341 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D + + L+P+ V + FR++CK++GADI +E A L + + + ESE
Sbjct: 6 LDIERPVILAPMEDVTDRSFRKICKRFGADIVYTEFVSAEALRRGVGKSIQKMLFEESER 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+Q+ GN+ + + + D++D+N GCP + + +G+G+ LL+
Sbjct: 66 PAVIQIFGNSGEAMAEAAVIAASAKP-DYLDINFGCPAKKVAGKGAGAALLREP------ 118
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
E+M A I +V+ +
Sbjct: 119 -----------------EKM----------------------------AAITAAVVKAV- 132
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
S+P+TVKTR G +D+ I + +P+ D G + I +HGRTR + Y +ADWD+I +
Sbjct: 133 ---SIPVTVKTRIGWDRDSVNILDIIPRLEDAGIAAIAVHGRTRSEMYKGRADWDWIARV 189
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ H + P+
Sbjct: 190 KE--------------------------HAKI------------------------PVIA 199
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI S +D + + G+MIGRGA+ P+IF+++KE
Sbjct: 200 NGDIWSPQDALAMFSHTGA-DGIMIGRGAIGNPFIFRQVKE 239
>gi|410995798|gb|AFV97263.1| hypothetical protein B649_04745 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 329
Score = 102 bits (253), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 137/342 (40%), Gaps = 108/342 (31%)
Query: 254 KIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+ ++ +Y L+PL +LPFR + KK+GAD+T SEM + L S + +++R +
Sbjct: 4 KLSFETPVYALAPLAGYTDLPFRNVVKKFGADLTVSEMISSNALAYGSEKTIRMLERSPN 63
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED + VQ+ G+ ++ + ++L +D +D+N GCP+ I GSGS LL
Sbjct: 64 EDPYSVQIAGSEEDIVRRAVEVLNGVEDIDIIDLNCGCPVPKIVSHGSGSSLL------- 116
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+ L + A I++++
Sbjct: 117 --------------------------------------------NDLPRMARIIETIKKT 132
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
N+ + ++VK R G N+I +D GA + +HGRTR ++ D+D I
Sbjct: 133 SNKST---LSVKIRLGFESKNHI--EIAKLVQDCGADFLAVHGRTRAGKFKAPVDYDAIA 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
E A + P +
Sbjct: 188 ------------------------------------------------EIKAAVGIP--V 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI S+E L+ + + GVMIGRGA+ PWIF ++K
Sbjct: 198 IANGDIDSFEKAQWVLEHTKA-DGVMIGRGAVGAPWIFHQLK 238
>gi|302560757|ref|ZP_07313099.1| tRNA-dihydrouridine synthase [Streptomyces griseoflavus Tu4000]
gi|302478375|gb|EFL41468.1| tRNA-dihydrouridine synthase [Streptomyces griseoflavus Tu4000]
Length = 390
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 135/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 29 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 71
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 72 -----------KTMQL-----------------IRFDESERPRS----------IQLYGV 93
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L+S++ +
Sbjct: 94 DPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRSILREAVGGAG 153
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R GI D+ + + G + + LHGRT Q Y ADWD I +
Sbjct: 154 DLPVTIKMRKGIDDDHLTYLDAGRIAVEEGVTAVALHGRTTAQHYGGTADWDAIAR---- 209
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 210 -------LKEHVPEI--------------------------------------PVLGNGD 224
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 225 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 259
>gi|383115511|ref|ZP_09936267.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. D2]
gi|313695083|gb|EFS31918.1| nifR3 family putative TIM-barrel protein [Bacteroides sp. D2]
Length = 331
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVRIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VMIGR + +PWIF+E+K
Sbjct: 209 PKRCKECFDRY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|336397635|ref|ZP_08578435.1| tRNA-U20-dihydrouridine synthase [Prevotella multisaccharivorax DSM
17128]
gi|336067371|gb|EGN56005.1| tRNA-U20-dihydrouridine synthase [Prevotella multisaccharivorax DSM
17128]
Length = 349
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 133/342 (38%), Gaps = 106/342 (30%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ + L+L+P+ V ++ FR+LCK++GA + +E VA E
Sbjct: 6 IDFGSRPLFLAPMEDVTDIGFRKLCKRYGAAMVYTEF-VAAE------------------ 46
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ +C +M VD G+
Sbjct: 47 -------------AIIRCISSTLSKMKVD-----------------------DDERPVGI 70
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ G + + + +++E D +D+N GCP++ + +G+G+GLL+ + + +
Sbjct: 71 QIYGKDVDSMVEAAKIVE-TFHPDIIDLNFGCPVKKVAGKGAGAGLLKDIPRMLEIAKAV 129
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
P+T KTR G K+N II + +D G +T+HGRTR Q YT ADW I +
Sbjct: 130 VNAVHTPVTAKTRLGWDKENLIITTLAEQLQDCGIQALTIHGRTRSQMYTGNADWTLIGE 189
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ N IH P+
Sbjct: 190 VKR-----NPRIH-------------------------------------------IPII 201
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI + E E+ K + VMIGR +PW F+E ++
Sbjct: 202 GNGDITTPEMAEEAFDKY-DVDAVMIGRATFGRPWFFKECRD 242
>gi|392964690|ref|ZP_10330110.1| TIM-barrel protein, nifR3 family [Fibrisoma limi BUZ 3]
gi|387846073|emb|CCH52156.1| TIM-barrel protein, nifR3 family [Fibrisoma limi BUZ 3]
Length = 330
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 59/252 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + +Q+ ++F G+QL G++ + C ++ + D +D+N
Sbjct: 42 EFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDIETMGACAEI-ASRANPDLIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+ LLQ + + + + + LP+TVKTR G ++ I +
Sbjct: 101 GCPVKNVACRGAGAALLQDIPKMVRMTEAVVKATHLPVTVKTRLGWDENTKNILEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G +T+HGRTR Q Y +ADW TL
Sbjct: 161 QDIGIQALTVHGRTRVQMYKGEADW--------------------------------TLI 188
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
GR RE P++GNGDI S E E K + GVMIGR
Sbjct: 189 GRIRENPRIN----------------IPIFGNGDIDSPEKALE-YKNRYGVDGVMIGRAT 231
Query: 584 LIKPWIFQEIKE 595
+ PWIF EIK
Sbjct: 232 IGYPWIFNEIKH 243
Score = 65.9 bits (159), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK GAD+ +E + L++ + + + E E G+QL
Sbjct: 14 LLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G++ + C + + + D +D+N GCP++ + +G+G+ LLQ
Sbjct: 74 FGSDIETMGACAE-IASRANPDLIDINYGCPVKNVACRGAGAALLQ 118
>gi|323141551|ref|ZP_08076436.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
gi|322413963|gb|EFY04797.1| TIM-barrel protein, nifR3 family [Phascolarctobacterium
succinatutens YIT 12067]
Length = 360
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 124/339 (36%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ L L+P+ + +LPFR +C++ G +T SEM A LL + + +++ + E
Sbjct: 31 IELSAPLALAPMAGITDLPFRLICRRLGCGMTVSEMVSAKGLLYKNVKTTEMLRIDDGER 90
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+QL G+ P L + +++E A D +D N+GCP+ I G GS L++
Sbjct: 91 PTAIQLFGSVPAELAEAARMVEASGA-DMIDFNMGCPVPKIVNNGEGSALMK-------- 141
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP Q+ D + M
Sbjct: 142 ----NP------------QLAHDIL-------------------------------AAMV 154
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+TVK R G N G S + +HGRTR+Q Y +ADW I
Sbjct: 155 KAVKIPVTVKFRAGWDDANRNAVEVARAVEAAGVSAVAVHGRTRQQFYEGKADWSIIADV 214
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q P++G
Sbjct: 215 KQAVK--------------------------------------------------VPVFG 224
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI + D L+++ G+MIGRGA PW+F +
Sbjct: 225 NGDIFTVADGLRMLEQT-GCDGLMIGRGADGNPWLFTAL 262
>gi|303235002|ref|ZP_07321626.1| TIM-barrel protein, nifR3 family [Finegoldia magna BVS033A4]
gi|302493857|gb|EFL53639.1| TIM-barrel protein, nifR3 family [Finegoldia magna BVS033A4]
Length = 310
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ G+ P ++ T+ L E +D+N+GCP I+K G GS L+ N+ + VI
Sbjct: 68 SVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDVIR 127
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ LP++VK R GI +++ N+M
Sbjct: 128 ACKNNTDLPVSVKFRLGIDENS---MNYM------------------------------- 153
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ AQ+C R ITLH RTR+ Y+ +ADW +I++ + P
Sbjct: 154 -QLAQICER--------------LKVDYITLHARTRKMFYSGEADWSHIKRVVENVD-IP 197
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
++GNGD + ED ++++ S + GV++ RGA+ P+IF + + K
Sbjct: 198 VFGNGDCFTKEDIRKNMEYS-NCDGVLLARGAMQNPFIFSDDENK 241
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE 311
K+K+ L+L+PL V ++PFR +C + GA + +EM A L + L+
Sbjct: 3 KEKLKLNSNLFLAPLAGVTDIPFRIICGELGAGLCFTEMISAKALYYDDKKTKKLLDTDP 62
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
E VQ+ G+ P ++ T+ L E +D+N+GCP I+K G GS L+ NL
Sbjct: 63 REKSTSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLA 122
Query: 372 G--VQLCGNN 379
++ C NN
Sbjct: 123 EDVIRACKNN 132
>gi|302385513|ref|YP_003821335.1| nifR3 family TIM-barrel protein [Clostridium saccharolyticum WM1]
gi|302196141|gb|ADL03712.1| TIM-barrel protein, nifR3 family [Clostridium saccharolyticum WM1]
Length = 326
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 122/331 (36%), Gaps = 107/331 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V +LPFR LC++ G + +EM A + L K + +L V
Sbjct: 14 LILAPMAGVTDLPFRFLCREQGCGMAVTEMVSAKAI---------LYKNRNTNELLKVA- 63
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P L QL G++P
Sbjct: 64 PGEGPVSL---------------------------------------------QLFGSDP 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ +EE F+DVN+GCP+ I G GS L++ + + ++T M + P
Sbjct: 79 EIMADIAAQVEEGPYA-FIDVNMGCPMPKIVNNGEGSALMKDIGLAERILTSMVKAVKKP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G +++ F G + + +HGRTREQ Y+ ADW I K + +
Sbjct: 138 VTVKFRKGFTEEDCNAVEFAKMAESCGVAAVAVHGRTREQYYSGTADWTIIRKVKEAVA- 196
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+
Sbjct: 197 -------------------------------------------------IPVIGNGDVFK 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
ED ++L + GVMI RGA PWIF+
Sbjct: 208 PED-AKALMEETGCDGVMIARGAKGNPWIFK 237
>gi|387132437|ref|YP_006298409.1| nifR3 family TIM-barrel protein [Prevotella intermedia 17]
gi|386375285|gb|AFJ08326.1| TIM-barrel protein, nifR3 family [Prevotella intermedia 17]
Length = 323
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/332 (25%), Positives = 138/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + V TE + + A+I+ +S
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAM------VYTEFVSAD----AVIRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L K EE+ P+ G+Q+ G +
Sbjct: 55 ------TLNKIVIDEEER------------PV-------------------GIQIYGKDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q+ D +D+N GCP++ + +G+GSG+L+ +L + + + + P
Sbjct: 78 ESMVEAAKIVE-QVKPDVIDINFGCPVKKVANKGAGSGMLKNIPLLLEITREVVKAVNTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D + S + VMIGR PW+F E
Sbjct: 209 VADAQKRF-DSYGVDAVMIGRATFGCPWLFSE 239
>gi|266624024|ref|ZP_06116959.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
gi|288864155|gb|EFC96453.1| tRNA-dihydrouridine synthase B [Clostridium hathewayi DSM 13479]
Length = 328
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 127/337 (37%), Gaps = 107/337 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ + L L+P+ V +LPFR LCK+ G + V TE++ + + L K ++
Sbjct: 8 VTLENNLILAPMAGVTDLPFRVLCKEQGCGM------VVTEMVSA---KAILYKNRNTKA 58
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L V+ +R VQ
Sbjct: 59 LLEVE----------------------------------------------ERERPVSVQ 72
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++ +L+E D +DVN+GCP+ I G GS +++ + ++V+ M
Sbjct: 73 LFGSDPEIMADIAKLIEPG-PFDIIDVNMGCPVPKIVNNGEGSAMMKNPRLAEAVLGAMV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+TVK R G + F G + + +HGRTREQ Y+ ADWD I
Sbjct: 132 KAVKKPVTVKFRKGFTDSDVNAVEFAKMAESCGVAAVAVHGRTREQYYSGTADWDII--- 188
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R K+A P+ G
Sbjct: 189 -----------------------------------RRVKEA------------VKIPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
NGD+ + ED ++L G+MI RGA PWIF
Sbjct: 202 NGDVFAPED-AKALLDETGCDGIMIARGAKGNPWIFS 237
>gi|303230948|ref|ZP_07317691.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302514330|gb|EFL56329.1| TIM-barrel protein, nifR3 family [Veillonella atypica
ACS-049-V-Sch6]
Length = 330
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 130/334 (38%), Gaps = 107/334 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
QGK L+P+ V ++ +R L K+ GA + C+EM A + + + L++ E
Sbjct: 13 QGKAILAPMAGVSDIAYRLLAKEHGASMVCTEMVSAMGIKYKNERTHELLRMEAVEHPVS 72
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
+Q+ G++P + +++ + A D VD+N+GCP++ + G GS L++ +L
Sbjct: 73 MQIFGSDPEAIALGAKVVADAGA-DIVDINMGCPVKKVVSSGDGSALMKTPDL------- 124
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
A + ++ + ++
Sbjct: 125 --------------------------------------------AARVAEAAVKAVD--- 137
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R G D+ + +F + G + + +HGRTREQ Y +A+W YI+
Sbjct: 138 -VPVTVKMRIGWDDDHINVVDFAKRIESTGVAAVAVHGRTREQMYMGRANWSYIKAVKDS 196
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P+ GNGD
Sbjct: 197 LS--------------------------------------------------IPVIGNGD 206
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
+ + ED ++++ VMIGRGA PWIF+
Sbjct: 207 VWTPEDALRMMQET-GCDAVMIGRGAQGNPWIFE 239
>gi|86144145|ref|ZP_01062482.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Leeuwenhoekiella blandensis MED217]
gi|85829407|gb|EAQ47872.1| putative TIM-barrel enzyme, possible dehydrogenase, contains a
highly conserved dihydrouridine synthase domain
[Leeuwenhoekiella blandensis MED217]
Length = 334
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 50/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G N + + +++E D +D+N GCP++ + +G+G+G+L+ +++ S+
Sbjct: 70 GIQIFGANLESMLQSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTE 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M + ++LPITVKTR G D+ I + +D G I +HGRTR Q Y ADW I
Sbjct: 129 AMVKHTNLPITVKTRLGWDHDSIKIVEVAERLQDVGCKAIAIHGRTRAQMYKGNADWKPI 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ ++N +H P
Sbjct: 189 AEV-----KNNQRMH-------------------------------------------IP 200
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++GNGD+ + E E ++ + G MIGR ++ PW F+E+K
Sbjct: 201 VFGNGDVDTPERAVE-MRDQYGLDGAMIGRASIGYPWFFREVK 242
>gi|375149803|ref|YP_005012244.1| tRNA-U20-dihydrouridine synthase [Niastella koreensis GR20-10]
gi|361063849|gb|AEW02841.1| tRNA-U20-dihydrouridine synthase [Niastella koreensis GR20-10]
Length = 346
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
FG+Q+ G + + ++++ + D VD+N GCP++ + +G+G+ +L+ + + +
Sbjct: 69 FGIQIFGGDEEAMALSAKIVD-TVQPDLVDINFGCPVKKVVSKGAGAAVLKDIDAMVRLT 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + + +SLP+TVKTR G ++ I + +D G +T+HGRTR Q Y +ADW
Sbjct: 128 SAVVKSTSLPVTVKTRLGWDDNSRNIEEVAERLQDVGIKALTIHGRTRAQLYKGEADWTL 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + NN P+ +
Sbjct: 188 I------AAVKNN------PRIQ------------------------------------I 199
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI + + E K + G+MIGR A+ PWIF+EIK
Sbjct: 200 PIFGNGDIDTPQKALE-YKNRYGVDGIMIGRAAIGYPWIFREIK 242
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 63/106 (59%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ SE + L++ + + A + +E E FG+Q+
Sbjct: 14 LLLAPMEDVSDPPFRFVCKQNGADLMYSEFISSEGLIRDAIKSRAKLDFNEFERPFGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G + + +++ + + D VD+N GCP++ + +G+G+ +L+
Sbjct: 74 FGGDEEAMALSAKIV-DTVQPDLVDINFGCPVKKVVSKGAGAAVLK 118
>gi|406951927|gb|EKD81709.1| tim-barrel protein, , NifR3 family [uncultured bacterium]
Length = 236
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 50/225 (22%)
Query: 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPIT 442
+ K +EE + D +D+N+GCP+ + K G+GS L++ ++ S+I + + +LP+T
Sbjct: 1 MAKAAAFIEELQICDVIDLNMGCPVPKVVKTGAGSALMKTPDLAASIIKAVRQAVTLPVT 60
Query: 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502
+K R G +++ + +F+ D GA +T+H RTR+ Y A W +++ LC
Sbjct: 61 IKCRIGWSENSINVLDFVKVVLDAGAQAVTVHARTRQAGYAGTAQWQHLQGIKDLCGS-- 118
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
P NGDI S
Sbjct: 119 -----------------------------------------------VPFIANGDI-SAP 130
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVWK 607
++ +L + G MIGRG + KPW+F ++ + + I WK
Sbjct: 131 EHIRTLSELTGCDGFMIGRGCVGKPWLFSQLLGHQFYQDKNIQWK 175
>gi|294675099|ref|YP_003575715.1| hypothetical protein PRU_2465 [Prevotella ruminicola 23]
gi|294473955|gb|ADE83344.1| putative TIM-barrel protein, NifR3 family [Prevotella ruminicola
23]
Length = 315
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/333 (24%), Positives = 139/333 (41%), Gaps = 105/333 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
Q ++L+P+ V ++ FR LCK++GA + V TE + + ALI+ +S
Sbjct: 10 QNPVFLAPMEDVTDIGFRLLCKRFGAAM------VYTEFVSAE----ALIRDVKS----- 54
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
++K T E+ P+ G+Q+ G
Sbjct: 55 ---------TISKLTISDTER------------PV-------------------GIQIYG 74
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+ + + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +
Sbjct: 75 RDVEAMVEAAKIVE-QAGPDLIDINFGCPVKKVAGKGAGAGMLQNIPKMLEITSKVVDAV 133
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+TVKTR G + + II + +D G +T+HGRTR Q YT +ADW I +
Sbjct: 134 KLPVTVKTRLGWNHEQLIITELAEQLQDCGIKALTIHGRTRSQMYTGEADWTLIGEV--- 190
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ N IH P+ GNGD
Sbjct: 191 --KRNPRIH-------------------------------------------IPIIGNGD 205
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
I S ++ E+ K+ + +MIGR PWIF
Sbjct: 206 IHSLDEADEAF-KTYGVDAIMIGRATFGCPWIF 237
>gi|254495051|ref|ZP_01053788.2| dihydrouridine synthase (Dus) [Polaribacter sp. MED152]
gi|213690633|gb|EAQ43216.2| dihydrouridine synthase (Dus) [Polaribacter sp. MED152]
Length = 315
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 50/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G N + K +++E+ D +D+N GCP++ + +G+G+G+L+ +++ S+
Sbjct: 52 GIQIFGANLDSMLKTIEIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTE 110
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M + ++LPITVKTR G D+ I + +D G I++HGRTR Q Y ADW
Sbjct: 111 AMVKHTNLPITVKTRLGWDHDSIRIVEVAERLQDVGCKAISIHGRTRAQMYKGNADW--- 167
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + NN P+ P
Sbjct: 168 ---VPIAAVKNN------PRMH------------------------------------IP 182
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
++GNGD+ + E E ++ + G MIGR ++ PW F E+K
Sbjct: 183 VFGNGDVTTPERAME-MRDKYGLDGAMIGRASIGYPWFFNEVKH 225
>gi|225389821|ref|ZP_03759545.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
gi|225044131|gb|EEG54377.1| hypothetical protein CLOSTASPAR_03569 [Clostridium asparagiforme
DSM 15981]
Length = 319
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 127/333 (38%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR LC++ G + +EM A + L K +++L V+
Sbjct: 14 VILAPMAGVTDLPFRLLCREQGCGMVVTEMVSAKAI---------LYKNKNTKELLTVRS 64
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
EE+ A VQL G++P
Sbjct: 65 ---------------EERPA-------------------------------AVQLFGSDP 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ + +E+ D +DVN+GCP+ I G GS L++ ++V++ M P
Sbjct: 79 EIMAEIAAQIEDG-PYDVIDVNMGCPVPKIVNNGEGSALMKDPKRAEAVLSAMVRAVKKP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + ++ F G + + +HGRTREQ Y+ ADWD I + +
Sbjct: 138 VTVKFRKGFNDESVNAVEFAKMAESCGVAAVAVHGRTREQYYSGTADWDIIRRVKEAVK- 196
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGD+ +
Sbjct: 197 -------------------------------------------------IPVIGNGDVFT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
ED L+++ G+M+ RGA PWIF I
Sbjct: 208 PEDAGRLLEQT-GCDGIMVARGAKGNPWIFHRI 239
>gi|443627697|ref|ZP_21112076.1| putative Dihydrouridine synthase [Streptomyces viridochromogenes
Tue57]
gi|443338801|gb|ELS53064.1| putative Dihydrouridine synthase [Streptomyces viridochromogenes
Tue57]
Length = 380
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 16 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 61
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 62 --------------KTMQL-----------------IHFDATEKPRS----------IQL 80
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 81 YGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPFKRNLLRAILREAVS 140
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 141 GAGDLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR- 199
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 200 ----------LKEHVPEI--------------------------------------PVLG 211
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 212 NGDIWSAEDAVRMVRET-GCDGVVVGRGCLGRPWLFADL 249
>gi|418689292|ref|ZP_13250414.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
FPW2026]
gi|418724521|ref|ZP_13283330.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str. UI
12621]
gi|400361437|gb|EJP17403.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
FPW2026]
gi|409961842|gb|EKO25584.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str. UI
12621]
Length = 329
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GK+ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + R++SE+
Sbjct: 11 GKISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMF-RYKSEE---- 65
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 66 -------------------------------RPITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC + +G+G+GLL+R + +I + + +
Sbjct: 76 RLEIIAEAAEIVQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G + + G +T+HGRT+E YT ADWD I
Sbjct: 135 IPVTAKIRIGWDSTSQNYLEVSKILEESGVDALTVHGRTKEMAYTGFADWDAI------- 187
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
G + R P++GNGDI
Sbjct: 188 -------------------------GEIKVNR------------------KIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K + GV+IGR A+ PWIF +K+++L
Sbjct: 205 KSFQEANFKIDKY-LLDGVLIGRNAIGNPWIFSGVKKEEL 243
>gi|62185558|ref|YP_220343.1| dihydrouridine synthase [Chlamydophila abortus S26/3]
gi|62148625|emb|CAH64397.1| putative dihydrouridine synthase [Chlamydophila abortus S26/3]
Length = 339
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 101/224 (45%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P ++ + ++LE + D +D+N GCP + I K GSGSGLL+ ++ V+
Sbjct: 72 IGGQLCGSKPEMVGEAAKVLE-GLGFDLIDLNCGCPTDRITKDGSGSGLLKSPELIGKVL 130
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E S+P+TVK R+G N + + RD GAS + +HGRTR Q Y ++ +Y
Sbjct: 131 EKIVEAVSVPVTVKIRSGWDGSNINVEETVRIIRDAGASAVFVHGRTRAQGYVDPSNLEY 190
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + +D +
Sbjct: 191 IARAKAAAGKDFPV---------------------------------------------- 204
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+GNGD+ S E + + S GV++ RG + PWI ++I+
Sbjct: 205 --FGNGDVFSPEA-AKLMLDSTQCDGVLVARGTMGAPWIVRQIE 245
>gi|29832192|ref|NP_826826.1| dihydrouridine synthase [Streptomyces avermitilis MA-4680]
gi|29609310|dbj|BAC73361.1| putative dihydrouridine synthase [Streptomyces avermitilis MA-4680]
Length = 401
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 103/222 (46%), Gaps = 51/222 (22%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT- 431
+QL G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++
Sbjct: 99 IQLYGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILRE 158
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
++ +LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I
Sbjct: 159 AVSGAGNLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAI 218
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + +P+ P
Sbjct: 219 AR-----------LKEHVPEI--------------------------------------P 229
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 230 VLGNGDIWSAEDAVRMVRET-GCDGVVVGRGCLGRPWLFSDL 270
>gi|332291315|ref|YP_004429924.1| nifR3 family TIM-barrel protein [Krokinobacter sp. 4H-3-7-5]
gi|332169401|gb|AEE18656.1| TIM-barrel protein, nifR3 family [Krokinobacter sp. 4H-3-7-5]
Length = 330
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFISSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G
Sbjct: 52 ------------DAAKSVMKLD---------------------IYEKERPVGIQIFGAVE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E D +D+N GCP++ + +G+G+G+L+ +++ S+ M + LP
Sbjct: 79 ESMLRSVEIVEASGP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTKAMVNHTKLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G + I++HGRTR Q Y ADW I +
Sbjct: 138 VTVKTRLGWDHDSIKIVEVAERLQDVGCAAISIHGRTRAQMYKGDADWGPIAEVK----- 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ + P++GNGD+ +
Sbjct: 193 -NN------PRMQ------------------------------------IPVFGNGDVNT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ + G MIGR ++ PW F E+K
Sbjct: 210 PERAVE-MRDKYGLDGAMIGRASIGYPWFFNEVK 242
>gi|315650052|ref|ZP_07903131.1| tRNA-dihydrouridine synthase [Lachnoanaerobaculum saburreum DSM
3986]
gi|315487681|gb|EFU77985.1| tRNA-dihydrouridine synthase [Lachnoanaerobaculum saburreum DSM
3986]
Length = 334
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/349 (23%), Positives = 134/349 (38%), Gaps = 107/349 (30%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+KN + I+ +G L L P+ V +LPFR LCK+ GA + +EM A + + +L
Sbjct: 16 LKNFKIGNINIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTEMVSAKAIYFKNKNTRSL 75
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+K + E +QL G++P ++ +E+ D D N+GCP+ I G G L++
Sbjct: 76 MKTDKYEHPISLQLFGSDPDIIADMAASIEDG-DFDIFDFNMGCPVPKIVNNGEGCALMK 134
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
NP +L+EE IL
Sbjct: 135 ------------NP-------KLVEE--------------------------------IL 143
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
++ + + P+T+K R G ++ + + G S +T+HGRTREQ Y +A
Sbjct: 144 SKLVKSVKK----PVTLKIRRGFDSESINAVDIAKIAENAGVSAVTVHGRTREQYYLGKA 199
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DWD I+ +
Sbjct: 200 DWDIIKDVKSAVN----------------------------------------------- 212
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ GNGD+ E + + + G+M+ R A PWIF+EI+E
Sbjct: 213 ---IPVIGNGDVADGES-AKRMYEYTGCDGIMVARAARGNPWIFREIRE 257
>gi|224025557|ref|ZP_03643923.1| hypothetical protein BACCOPRO_02297 [Bacteroides coprophilus DSM
18228]
gi|224018793|gb|EEF76791.1| hypothetical protein BACCOPRO_02297 [Bacteroides coprophilus DSM
18228]
Length = 327
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + + ALI R S+ L + +
Sbjct: 13 VLLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSAD----ALI-RSVSKTLLKLNI 61
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+E+ V +Q+ G +
Sbjct: 62 S--------------DEERPV------------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+GSGLLQ + + + +P
Sbjct: 78 ETMVEAARIVE-QAKPDILDLNFGCPVKRVAGKGAGSGLLQNIPKMLEITRAVVNAVRIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II + +D G +T+HGRTR Q YT +ADW I +
Sbjct: 137 VTVKTRLGWDAEHKIIVPLAEQLQDCGIEALTIHGRTRAQMYTGEADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ R P+ GNGD+ +
Sbjct: 191 KNN------PRMR------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + +M+GR + +PWIF+EIK
Sbjct: 209 PQRAQECFDRY-GVDAIMVGRASFGRPWIFKEIK 241
>gi|116669897|ref|YP_830830.1| nifR3 family TIM-barrel protein [Arthrobacter sp. FB24]
gi|116610006|gb|ABK02730.1| putative TIM-barrel protein, nifR3 family [Arthrobacter sp. FB24]
Length = 392
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 52/234 (22%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + +EM + L++ +P+ +I + E + VQL
Sbjct: 28 VILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISHDDDEKVRSVQL 87
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 88 YGVDPVTVGQAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF--------- 138
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I+Q+ + ++ ++P
Sbjct: 139 ------------------------------------------TSIVQTAVKEASK-GNVP 155
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+T+K R GI +D+ + RD G + + LHGRT Q Y+ QADW I +
Sbjct: 156 LTIKMRKGIDEDHLTYLDAGRIARDAGVAAVALHGRTAAQFYSGQADWSAIARL 209
Score = 85.9 bits (211), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 100/229 (43%), Gaps = 61/229 (26%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P + + ++L E+ D +D+N GCP+ + ++G GS L + ++ S++ T
Sbjct: 85 VQLYGVDPVTVGQAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTSIVQT 144
Query: 432 CMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S ++P+T+K R GI +D+
Sbjct: 145 AVKEASKGNVPLTIKMRKGIDEDH------------------------------------ 168
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
L D I RD G + + LHGRT Q Y+ QADW I + +
Sbjct: 169 -------LTYLDAGRIA------RDAGVAAVALHGRTAAQFYSGQADWSAIARLREALPD 215
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ V+ GR PW+F +++
Sbjct: 216 IPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGR-----PWLFGDLQ 259
>gi|397691749|ref|YP_006529003.1| TIM-barrel protein, nifR3 family [Melioribacter roseus P3M]
gi|395813241|gb|AFN75990.1| TIM-barrel protein, nifR3 family [Melioribacter roseus P3M]
Length = 331
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 142/352 (40%), Gaps = 112/352 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E K L L+P+ V ++ FR+LCK+ GADI +E + L++S+ +
Sbjct: 1 MLKIGNIELNK-----PLLLAPMEDVTDIAFRKLCKELGADIVYTEFINSDGLVRSNKKT 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
++ E E G+Q+ G N + + +++ E + D +D+N GC ++ + +G+G+G
Sbjct: 56 HRKMEITEQERPVGIQIYGGNLEPMIESAKIV-EGLNPDIIDINAGCWVKKVANRGAGAG 114
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
LL+ G MV + V N+ P
Sbjct: 115 LLKNPEFMGT--------------------MVKEIVK-NVKLP----------------- 136
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+TVKTR G + I + + GA+ +T+H RTR Q ++
Sbjct: 137 -----------------VTVKTRIGWDETTINIQEVAKRLEEAGAAALTIHCRTRSQGHS 179
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ DW +I++ ++ S
Sbjct: 180 GEPDWSWIDRVKEVVS-------------------------------------------- 195
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ NG I S ED + + S + GVMI RGA+ +PWIF+E KE
Sbjct: 196 ------IPVILNGGIFSAEDVKRAFETSAA-DGVMIARGAIERPWIFREAKE 240
>gi|209526027|ref|ZP_03274560.1| TIM-barrel protein, nifR3 family [Arthrospira maxima CS-328]
gi|376002226|ref|ZP_09780066.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Arthrospira sp. PCC 8005]
gi|209493553|gb|EDZ93875.1| TIM-barrel protein, nifR3 family [Arthrospira maxima CS-328]
gi|375329394|emb|CCE15819.1| putative tRNA-dihydrouridine synthase (Nitrogen regulation protein
nifR3) [Arthrospira sp. PCC 8005]
Length = 335
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 51/197 (25%)
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
D +DVN+GCP+ I K G GS LL++ I + ++ +NE S+PITVKTR G +D I
Sbjct: 107 DTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIVRSLNEAVSVPITVKTRLGWDEDEINI 166
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+F + + GA ++T+HGRTR Q YT +A+W++I + Q S
Sbjct: 167 LDFSKRMENAGAQMLTIHGRTRAQGYTGKANWEWIARVKQNVS----------------- 209
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P+ NGDI+S + L+++ + G
Sbjct: 210 ---------------------------------IPVIANGDIVSVSSAVQCLQETGA-DG 235
Query: 577 VMIGRGALIKPWIFQEI 593
VM RG L P++ EI
Sbjct: 236 VMCSRGTLGYPFLVGEI 252
>gi|255657504|ref|ZP_05402913.1| tRNA-dihydrouridine synthase [Clostridium difficile QCD-23m63]
gi|296452824|ref|ZP_06894511.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP08]
gi|296879924|ref|ZP_06903896.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP07]
gi|296258372|gb|EFH05280.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP08]
gi|296429038|gb|EFH14913.1| tRNA-dihydrouridine synthase [Clostridium difficile NAP07]
Length = 322
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/340 (25%), Positives = 136/340 (40%), Gaps = 109/340 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + K++LSP+ V +LPFR +CK+ G + +EM L ++K + E
Sbjct: 6 LELKNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEMINGKALCYDDENTKKMLKIEDEEH 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQ+ G+ P + + +++ + + + +D+N+GCP + K G GS L++
Sbjct: 66 PVAVQIFGSEPEFMGRAAEIMND-YSNEILDINMGCPAPKVVKNGDGSALMK-------- 116
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP +L EE +L++V+
Sbjct: 117 ----NP-------KLAEE--------------------------------VLRAVVKN-- 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEK 493
S P+T+K R G DN++ + K D G S + +HGRTREQ YT +ADWD I +
Sbjct: 132 --SKKPVTLKIRKG-WDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYTGKADWDIIAE 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S P+
Sbjct: 189 IKKNLS--------------------------------------------------IPVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ + ED L K+ +MIGRGA PWIF+ I
Sbjct: 199 GNGDVFTIEDSINMLDKT-GCDAIMIGRGAQGNPWIFKRI 237
>gi|423061889|ref|ZP_17050679.1| TIM-barrel protein nifR3 family [Arthrospira platensis C1]
gi|406716462|gb|EKD11611.1| TIM-barrel protein nifR3 family [Arthrospira platensis C1]
Length = 342
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 92/197 (46%), Gaps = 51/197 (25%)
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
D +DVN+GCP+ I K G GS LL++ I + ++ +NE S+PITVKTR G +D I
Sbjct: 114 DTIDVNMGCPVNKITKNGGGSSLLRQPEIAEKIVRSLNEAVSVPITVKTRLGWDEDEINI 173
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+F + + GA ++T+HGRTR Q YT +A+W++I + Q S
Sbjct: 174 LDFSKRMENAGAQMLTIHGRTRAQGYTGKANWEWIARVKQNVS----------------- 216
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P+ NGDI+S + L+++ + G
Sbjct: 217 ---------------------------------IPVIANGDIVSVSSAVQCLQETGA-DG 242
Query: 577 VMIGRGALIKPWIFQEI 593
VM RG L P++ EI
Sbjct: 243 VMCSRGTLGYPFLVGEI 259
>gi|163786900|ref|ZP_02181348.1| probable TIM-barrel protein, NifR3 family [Flavobacteriales
bacterium ALC-1]
gi|159878760|gb|EDP72816.1| probable TIM-barrel protein, NifR3 family [Flavobacteriales
bacterium ALC-1]
Length = 331
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ V TE + S LI+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADV------VYTEFVSSE----GLIR------------ 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ M +D + ++ G+Q+ G N
Sbjct: 52 ------------NAAKSVMKLD---------------------IYEKERPVGIQIFGANM 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++E+ D +D+N GCP++ + +G+G+G+L+ +++ + M + ++LP
Sbjct: 79 ESMLQTIDIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILKDICLMEKLTAEMVKRTNLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ I + +D G I +HGRTR Q Y ADW I + +
Sbjct: 138 VTVKTRLGWDHDSIKIVEVAERLQDVGCKSIAIHGRTRAQMYKGDADWKPIAEV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGDI +
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDINT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E E ++ S + G MIGR + PW F+++K
Sbjct: 210 PERAAE-MRDSYGLDGAMIGRATIGNPWFFKQVK 242
>gi|297622174|ref|YP_003710311.1| tRNA-dihydrouridine synthase B [Waddlia chondrophila WSU 86-1044]
gi|297377475|gb|ADI39305.1| putative tRNA-dihydrouridine synthase B [Waddlia chondrophila WSU
86-1044]
gi|337292529|emb|CCB90546.1| putative tRNA-dihydrouridine synthase [Waddlia chondrophila
2032/99]
Length = 326
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 129/340 (37%), Gaps = 106/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I ++ SPL + PFR++C ++ + EM L++ P + ++ E
Sbjct: 13 ISLPNNVFYSPLAGCSDFPFRQMCAQYNPGLIYCEMVKMDALIRHDPATFHILDYEE--- 69
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
G +P G Q
Sbjct: 70 -------GMHP---------------------------------------------IGAQ 77
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
LCG+ P + K ++LE+ + D +D+N GCP++ + K GSGSGLL++ + +++ M
Sbjct: 78 LCGSKPELAGKAAKILED-LGFDVIDLNCGCPVDKVTKDGSGSGLLKQPEKIAEILSEMV 136
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
S+P+TVK R G ++ I GA+ I +HGRTR+Q Y A+WDYI+ C
Sbjct: 137 AAVSVPVTVKIRAGWDDESIIAEEITRLAEKAGAAAIAIHGRTRKQAYRGDANWDYIKAC 196
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ + I G
Sbjct: 197 KETAGKIKVI-------------------------------------------------G 207
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGD+ E E + + V++ RG + KPWI ++I+
Sbjct: 208 NGDVFDAE-AAEQMFRYTGCDAVLVSRGTMGKPWIAEDIQ 246
>gi|443477495|ref|ZP_21067338.1| TIM-barrel protein, nifR3 family [Pseudanabaena biceps PCC 7429]
gi|443017361|gb|ELS31818.1| TIM-barrel protein, nifR3 family [Pseudanabaena biceps PCC 7429]
Length = 357
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/342 (25%), Positives = 135/342 (39%), Gaps = 113/342 (33%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATEL--LKSSPQEWALIKRHE 311
+ Q ++ SPL+ V +L FRRL +++ AD + +EM AT+L +K+ P+ I RHE
Sbjct: 21 VTLQSRVLQSPLSGVTDLVFRRLVRRYAADSMLYTEMISATDLHHMKALPKLME-IDRHE 79
Query: 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ +QL C EF+ + Q+A L
Sbjct: 80 TP--ISIQL---------------------------FDCRPEFLAEAA------QKAVLE 104
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G D VD+N+GCP+ I K+G GS LL++ + ++
Sbjct: 105 GA-----------------------DTVDINMGCPVNKITKKGGGSSLLRQPELAAQIVR 141
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ +P+TVKTR G I +F + D GA +IT+H RTR Q YT QA W++I
Sbjct: 142 SVVAAVDIPVTVKTRLGWDDAEITILDFAKRMEDAGAKMITIHARTRSQGYTGQAKWEWI 201
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K ++ + P
Sbjct: 202 RKVKEVLT--------------------------------------------------IP 211
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ NGDI S E L+ + + GVM RG L P++ E+
Sbjct: 212 VIANGDIFSVEAAIACLEATGA-DGVMCSRGTLGYPFLVGEV 252
>gi|384171411|ref|YP_005552788.1| tRNA-dihydrouridine synthase [Arcobacter sp. L]
gi|345471021|dbj|BAK72471.1| tRNA-dihydrouridine synthase [Arcobacter sp. L]
Length = 299
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 131/336 (38%), Gaps = 109/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+PL +LPFR + KK+GAD+T SEM + L+ S + +I++ +ED
Sbjct: 1 MVLAPLAGYTDLPFRSVVKKFGADLTISEMISSNALVYKSARTLKMIEKSPTED------ 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PY VQ+ GN+
Sbjct: 55 ----PYF---------------------------------------------VQIAGNSV 65
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ Q+L + +D +D+N GCP ++ GSGS LL L+ +++ + + S
Sbjct: 66 ELVRDAVQILNDVEGIDGIDLNCGCPAPKVFNHGSGSNLLGDLKKLEEILSTVKKYSKKQ 125
Query: 441 IT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
T K R G+++ I + G +++HGRTR +Y D+D I++ + S
Sbjct: 126 YTSAKVRLGVNE--KIPVDIGKAVEACGVDFVSVHGRTRAGKYKAPVDYDAIKQMKEAIS 183
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ NGDI
Sbjct: 184 --------------------------------------------------IPVIANGDIK 193
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
Y+ E L + + +GVMIGRGA+ KPW+F ++K
Sbjct: 194 DYDKAKEVLAYTNA-NGVMIGRGAIGKPWVFYQLKH 228
>gi|50954563|ref|YP_061851.1| NifR3/Smm1 family transcriptional regulator [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951045|gb|AAT88746.1| transcriptional regulator, NifR3/Smm1 family [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 408
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/333 (23%), Positives = 127/333 (38%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++GA + SEM + L++ +P+ LI HESE +QL
Sbjct: 36 VVLAPMAGITNTAFRRLCREFGAGLYVSEMITSRALVERTPESLRLIAHHESETPRSIQL 95
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + + LL + D +D+N GCP+ + ++G G+ L + LF
Sbjct: 96 YGVDPKTVREAVTLLVAEDRADHIDLNFGCPVPKVTRKGGGAALPWKLGLF--------- 146
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I++ + ++ P
Sbjct: 147 ------------------------------------------REIVEGAVAAAGDI---P 161
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R GI D+ G + I LH RT + Y+ ADW I
Sbjct: 162 LTVKMRKGIDSDHLTYLEAARAAEGAGVASIALHARTAAEFYSGHADWPAI--------- 212
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
RT ++ T P+ GNGDI S
Sbjct: 213 ------------------------RTLKETITGT----------------PVIGNGDIWS 232
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
D ++++ GV++GRG L +PW+F ++
Sbjct: 233 AADAVRMVEET-GCDGVVVGRGCLGRPWLFGDL 264
>gi|299144973|ref|ZP_07038041.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 3_1_23]
gi|298515464|gb|EFI39345.1| TIM-barrel protein, putative, NifR3 family [Bacteroides sp. 3_1_23]
Length = 331
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKRFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L A V +Q+ G +
Sbjct: 51 ------AVSKTAQKLSISDAERPV---------------------------AIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAAKIVE-QAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N +I + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKVIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + VMIGR + +PWIF+E+K
Sbjct: 209 PQRCKECFDHY-GVDAVMIGRASFGRPWIFKEVK 241
>gi|373955125|ref|ZP_09615085.1| TIM-barrel protein, nifR3 family [Mucilaginibacter paludis DSM
18603]
gi|373891725|gb|EHQ27622.1| TIM-barrel protein, nifR3 family [Mucilaginibacter paludis DSM
18603]
Length = 330
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++ + K + D+FG +
Sbjct: 15 LLLAPMEDVSDPPFRYVCKQNGADMMYTEFISSEGLIRDAA------KSRKKLDIFGYER 68
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PI G+Q+ G++
Sbjct: 69 ------------------------------PI-------------------GIQIFGSDI 79
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + T++ + D +D+N GCP++ + +G+G+ LLQ + + ++ + E + LP
Sbjct: 80 ESMREATRI-ATKAEPDLMDINYGCPVKQVACRGAGASLLQDIDKMVAMTRAVVESTHLP 138
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G + ++ + ++ G +T+HGRTR Q Y +ADW I + +
Sbjct: 139 VTVKTRLGWDDNTKNVYEVAERLQEVGIKALTIHGRTRAQMYKGEADWRLIAE----IKK 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ NI P++GNGDI S
Sbjct: 195 NPNI--------------------------------------------EIPIFGNGDIDS 210
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + + + G+MIGR A+ PWIF+EIK
Sbjct: 211 PEK-AANWRLEYGVDGMMIGRAAIGYPWIFREIK 243
>gi|410448063|ref|ZP_11302149.1| TIM-barrel protein, nifR3 family [Leptospira sp. Fiocruz LV3954]
gi|410017962|gb|EKO80008.1| TIM-barrel protein, nifR3 family [Leptospira sp. Fiocruz LV3954]
Length = 318
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 141/340 (41%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G++ LSP+ + + P R++C+K+GA + +E A E
Sbjct: 11 GRISLSPMAGISDSPTRKICRKFGAAFSYTEFVNADE----------------------- 47
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
L P L K Q E+ + F Q+ GN
Sbjct: 48 -LVHRAPKAL-KMFQFDPEERPITF------------------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
++ + ++++E + D +D+N+GC I +G+G+GLL++ + +I + + +
Sbjct: 76 RLEIIAEAAEIIQE-LKPDIIDLNMGCSTRKISLRGAGAGLLRKPTLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G N +Y+E L
Sbjct: 135 VPVTAKIRLGWDSGNR----------------------------------NYLEVSKIL- 159
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ GA+ +T+HGRT+E YT ADWD I + + P++GNGDI
Sbjct: 160 --------------EESGANALTVHGRTKEMAYTGLADWDAIGEV-KARRKIPIFGNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
SYE+ + K ++ GV++GR A+ PWIF EIK++KL
Sbjct: 205 KSYEEANSKIDKY-ALDGVLVGRAAIGNPWIFSEIKKEKL 243
>gi|456390605|gb|EMF56000.1| dihydrouridine synthase [Streptomyces bottropensis ATCC 25435]
Length = 384
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 23 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 65
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 66 -----------KTMQL-----------------IRFDATEKPRS----------IQLYGV 87
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 88 DPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVSGAG 147
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 148 DLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR---- 203
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 204 -------LKEHVPEI--------------------------------------PVLGNGD 218
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 219 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 253
>gi|302390915|ref|YP_003826735.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
gi|302202992|gb|ADL11670.1| tRNA-U20-dihydrouridine synthase [Acetohalobium arabaticum DSM
5501]
Length = 322
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 128/341 (37%), Gaps = 107/341 (31%)
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
E +++ + L+P+ V +LPFRR+ K++G + C+EM A L+ S + L+
Sbjct: 2 EIGEVELDNPVMLAPMAGVTDLPFRRIVKEFGCGLVCTEMVSAKGLVYGSSRTEELLTIS 61
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ E +Q+ G+ P ++ + + +EE D +DVNLGCP I K G+GS L++ +L
Sbjct: 62 DQERPVSLQIFGSEPEIMAEAVEKIEEYRP-DIIDVNLGCPTPKIVKGGAGSVLMKEPDL 120
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G +VD + PI ++G + I Q+
Sbjct: 121 VG---------------------RIVDALVRATEIPITVKMRKGWDEDHVNAVEIAQTA- 158
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ G + +HGRTREQ Y +ADW+
Sbjct: 159 ---------------------------------EESGVQAVAVHGRTREQFYKGEADWNI 185
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I++ +
Sbjct: 186 IKEVKEAVE--------------------------------------------------V 195
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
P+ GNGDI S +D E + + GVMI RGA PWIF+
Sbjct: 196 PVIGNGDIFSPQD-AEEMIDTTGCDGVMIARGAQGNPWIFK 235
>gi|290960587|ref|YP_003491769.1| dihydrouridine synthase [Streptomyces scabiei 87.22]
gi|260650113|emb|CBG73229.1| putative dihydrouridine synthase [Streptomyces scabiei 87.22]
Length = 384
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 23 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 65
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 66 -----------KTMQL-----------------IRFDATETPRS----------IQLYGV 87
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 88 DPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVSGAG 147
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 148 DLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR---- 203
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 204 -------LKEHVPEI--------------------------------------PVLGNGD 218
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 219 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 253
>gi|171912320|ref|ZP_02927790.1| putative transcriptional regulator [Verrucomicrobium spinosum DSM
4136]
Length = 331
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 126/335 (37%), Gaps = 106/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+P+ V ++ FR LCK+ GAD+ +E A +L++ + + +++ GVQL
Sbjct: 12 LYLAPMAGVTDMVFRSLCKELGADVMVTEFVSAEGILQADERTRKYTEFDDAQRTVGVQL 71
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + + + + + + DF+D+N GCP+ + + GS LL+
Sbjct: 72 FGADGQRMGEAARKIVDWKSPDFIDINFGCPVNKVVAKNGGSSLLK-------------- 117
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
CP +L SV + + +P
Sbjct: 118 -----------------------DCP------------------LLSSVAAGIVKAVPVP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T K R G + D G I +HGRTR Q YT QADW I +CA
Sbjct: 137 VTAKIRIGWDATSINAVEVCRLLEDTGIQAIAIHGRTRAQGYTGQADWGVIAECA----- 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
A + P + GNGDI +
Sbjct: 192 -------------------------------------------AAVKIP--IIGNGDIAT 206
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
D +++ + GVMIGR A+ PW+F+E K
Sbjct: 207 GMDVARRQRET-GVHGVMIGRAAMGNPWVFREAKH 240
>gi|326792443|ref|YP_004310264.1| hypothetical protein Clole_3376 [Clostridium lentocellum DSM 5427]
gi|326543207|gb|ADZ85066.1| TIM-barrel protein, nifR3 family [Clostridium lentocellum DSM 5427]
Length = 324
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 106/241 (43%), Gaps = 55/241 (22%)
Query: 354 FIYKQGSGSGLL---QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ G + LL + + G QL G++P +L++ + +E Q VDF+D+N+GCP I
Sbjct: 47 LLYENGKTNDLLYIDPKEHPIGAQLFGSDPKILSEMAKQVE-QSDVDFIDINMGCPAPKI 105
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470
K G GS LL+ ++ ++ + + + P+TVK R G + + + GAS
Sbjct: 106 TKNGEGSALLKNPELIGEIVYAVAKALTKPLTVKIRKGFNDEMVNAVEVAKIIEEAGASA 165
Query: 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530
I LHGRTREQ Y+ ADWD I++ Q IH
Sbjct: 166 IALHGRTREQFYSGSADWDIIKEVKQH-------IH------------------------ 194
Query: 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
PL GNGDI + +D L + V+I R A PWIF
Sbjct: 195 -------------------IPLIGNGDIRTPQDAKRMLDYT-GCDAVLIARAAQGNPWIF 234
Query: 591 Q 591
+
Sbjct: 235 K 235
>gi|374294853|ref|YP_005045044.1| tRNA-U20-dihydrouridine synthase [Clostridium clariflavum DSM
19732]
gi|359824347|gb|AEV67120.1| tRNA-U20-dihydrouridine synthase [Clostridium clariflavum DSM
19732]
Length = 325
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 133/340 (39%), Gaps = 109/340 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ + ++L+P+ V ++PFR LCK+ G + +EM A + + + + L + E+
Sbjct: 6 VTLENNIFLAPMAGVTDMPFRILCKEQGCGMVYTEMVSAKGIYYNDEKSFKLTQIDPKEE 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+Q+ G+ P ++ K + L Q+ +D+N+GCP I K G G L++ L G
Sbjct: 66 PTALQIFGSEPDIMAKVAERL-SQLNAAIIDINMGCPTPKITKNGEGCALMRNPELAG-- 122
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
I++ V+
Sbjct: 123 -------------------------------------------------KIVREVV---- 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEK 493
+ S P+TVK R G DN + + K + GAS IT+HGRTREQ Y+ +ADW+ I+K
Sbjct: 130 KASGKPVTVKIRKG-WDDNCVNAVEIAKIAEENGASAITVHGRTREQFYSGKADWEIIKK 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ + P+
Sbjct: 189 VKEAVT--------------------------------------------------IPVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI +D L+++ VM+GRGA PWIF +I
Sbjct: 199 GNGDIFQEDDAKRMLEET-GCDAVMVGRGAQGNPWIFDKI 237
>gi|257063743|ref|YP_003143415.1| TIM-barrel protein, nifR3 family [Slackia heliotrinireducens DSM
20476]
gi|256791396|gb|ACV22066.1| putative TIM-barrel protein, nifR3 family [Slackia
heliotrinireducens DSM 20476]
Length = 341
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 93/221 (42%), Gaps = 53/221 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
GVQL G+ P + + +E+ + V DVN+GCP I K+G GS LL ++ Q +
Sbjct: 72 GVQLFGHEPDTMAREAAWVEDSLGEKLVCIDVNMGCPARKIIKKGDGSALLNTPDVAQQI 131
Query: 430 ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ + S P+TVK R G ++ +F + D GA +T+HGRT Q Y+ ADWD
Sbjct: 132 VRQIKSQVSCPVTVKFRKGFAAGEDVACDFAKRMEDAGADWMTVHGRTTAQMYSGDADWD 191
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
+ + + S
Sbjct: 192 VLGRVKRSVS-------------------------------------------------- 201
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
P+ GNGDI ED ++ + + GVMI RGA PWIF
Sbjct: 202 VPVIGNGDIKRGED-ARAMVDATGVDGVMIARGAQGNPWIF 241
>gi|404487163|ref|ZP_11022350.1| hypothetical protein HMPREF9448_02811 [Barnesiella intestinihominis
YIT 11860]
gi|404335659|gb|EJZ62128.1| hypothetical protein HMPREF9448_02811 [Barnesiella intestinihominis
YIT 11860]
Length = 330
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/334 (22%), Positives = 131/334 (39%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + FR +CK++GAD+ +E + L+++ + ++E +Q+
Sbjct: 13 LLLAPMEDVTDESFRLMCKEFGADMVYTEFVSSDALVRNINSTMRKLSIQDAERPVAIQI 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + EE NP
Sbjct: 73 YGRFVDAMVDAARRCEEA----------------------------------------NP 92
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
D +D+N GCP++ + +G+G+G+L+ ++ + + + +P
Sbjct: 93 ----------------DVLDINFGCPVKKVAGKGAGAGMLRDIPLMLKITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + + +D G + +T+HGRTR Q YT +ADW I +
Sbjct: 137 VTVKTRLGWDHDSKIIVDLAERLQDCGIAALTIHGRTRSQMYTGEADWTLIGEV------ 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ R P+ GNGD+ +
Sbjct: 191 KNN------PRMR------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + + VM+GR + PWIF+E+K
Sbjct: 209 PQIAKERFDRY-GVDAVMVGRASFGCPWIFKEMK 241
>gi|296130021|ref|YP_003637271.1| nifR3 family TIM-barrel protein [Cellulomonas flavigena DSM 20109]
gi|296021836|gb|ADG75072.1| TIM-barrel protein, nifR3 family [Cellulomonas flavigena DSM 20109]
Length = 442
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/369 (24%), Positives = 140/369 (37%), Gaps = 120/369 (32%)
Query: 221 TPNTDDVIKVQEETKSGPV-LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCK 279
TP DV V + GP+ +DT ++ L+P+ V N FRRLC+
Sbjct: 54 TPTGPDVRPVLPPLRIGPITVDTPVV-----------------LAPMAGVTNAAFRRLCR 96
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM 339
+ GA + +EM + L++ SP+ + +I E VQ+ G +P + +LL E+
Sbjct: 97 ESGAGLYVAEMLTSRALVERSPESFRIIAFEPDEVPRSVQVYGVDPATVGAAVRLLVEED 156
Query: 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFV 399
D VD+N GCP+ + ++G G+ L + LF
Sbjct: 157 RADHVDLNFGCPVPKVTRRGGGAVLPWKRELF---------------------------- 188
Query: 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459
A+I+++ + +P+TVK R GI +D+
Sbjct: 189 -----------------------ASIVRAAVDAARP-HGVPVTVKMRKGIDEDHLTYVEA 224
Query: 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519
+D G + + LHGRT Y+ ADWD I A+L
Sbjct: 225 GLTAQDAGVAAVALHGRTAADYYSGTADWDAI-------------------------ATL 259
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579
K+A D P+ GNGDI S ED + + GV++
Sbjct: 260 -------------KEAVTDI-----------PVLGNGDIWSAEDALAMVAHT-RCDGVVV 294
Query: 580 GRGALIKPW 588
GRG +PW
Sbjct: 295 GRGCQGRPW 303
>gi|352684182|ref|YP_004896167.1| hypothetical protein Acin_0795 [Acidaminococcus intestini RyC-MR95]
gi|350278837|gb|AEQ22027.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 325
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 52/223 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P L +++E + D +DVN+GCP+ I G GS L++ + + +++
Sbjct: 71 AIQLFGSVPSELAAAGKIVESRGA-DMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILA 129
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + S+P+TVK R G WD
Sbjct: 130 ALVDAVSIPVTVKFRAG---------------------------------------WDEA 150
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K A + ++ G S + +HGRTR Q Y +ADWD I + P
Sbjct: 151 HKNAAVIAQ----------MAEKAGVSAVCVHGRTRAQFYQGKADWDIIRAVKESVG-IP 199
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGDI ED +K+ GVMI RGA PWIF+++K
Sbjct: 200 VLGNGDIFHAEDALR-MKEETGCDGVMIARGAEGNPWIFRDVK 241
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 56/231 (24%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR +C++ GAD T SEM A LL + + +A++ E +QL
Sbjct: 15 VVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTAIQL 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P L +++E + A D +DVN+GCP+ I G GS L++ +
Sbjct: 75 FGSVPSELAAAGKIVESRGA-DMIDVNMGCPVHKIVSNGEGSALMKDPD----------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +L +VD V + P+ ++ G
Sbjct: 123 ----KVYAILAA--LVDAVSI----PVTVKFRAGWDEA---------------------- 150
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
HK+ +I K G S + +HGRTR Q Y +ADWD I
Sbjct: 151 ---------HKNAAVIAQMAEK---AGVSAVCVHGRTRAQFYQGKADWDII 189
>gi|227824807|ref|ZP_03989639.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226905306|gb|EEH91224.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 321
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 97/223 (43%), Gaps = 52/223 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G+ P L +++E + D +DVN+GCP+ I G GS L++ + + +++
Sbjct: 67 AIQLFGSVPSELAAAGKIVESRGA-DMIDVNMGCPVHKIVSNGEGSALMKDPDKVYAILA 125
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + S+P+TVK R G WD
Sbjct: 126 ALVDAVSIPVTVKFRAG---------------------------------------WDEA 146
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K A + ++ G S + +HGRTR Q Y +ADWD I + P
Sbjct: 147 HKNAAVIAQ----------MAEKAGVSAVCVHGRTRAQFYQGKADWDIIRAVKESVG-IP 195
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGDI ED +K+ GVMI RGA PWIF+++K
Sbjct: 196 VLGNGDIFHAEDALR-MKEETGCDGVMIARGAEGNPWIFRDVK 237
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 99/231 (42%), Gaps = 56/231 (24%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR +C++ GAD T SEM A LL + + +A++ E +QL
Sbjct: 11 VVLAPMAGVTDLPFRVICRENGADYTVSEMVSAKALLYKNQKTFAMLTIDPKEHPTAIQL 70
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ P L +++E + A D +DVN+GCP+ I G GS L++ +
Sbjct: 71 FGSVPSELAAAGKIVESRGA-DMIDVNMGCPVHKIVSNGEGSALMKDPD----------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
K +L +VD V + P+ ++ G
Sbjct: 119 ----KVYAILAA--LVDAVSI----PVTVKFRAGWDEA---------------------- 146
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
HK+ +I K G S + +HGRTR Q Y +ADWD I
Sbjct: 147 ---------HKNAAVIAQMAEK---AGVSAVCVHGRTRAQFYQGKADWDII 185
>gi|442323859|ref|YP_007363880.1| putative tRNA-dihydrouridine synthase [Myxococcus stipitatus DSM
14675]
gi|441491501|gb|AGC48196.1| putative tRNA-dihydrouridine synthase [Myxococcus stipitatus DSM
14675]
Length = 338
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 114/288 (39%), Gaps = 76/288 (26%)
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLG---CPIEFIYKQGSGSGLLQRAN----------- 369
NPYVL + E M + +G CP E + QG L RAN
Sbjct: 11 NPYVLAPMAGVSE--MPFRVLAFRMGAALCPTELVSSQG-----LMRANQRTLMYLRFDA 63
Query: 370 ----LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+ +QL G +P + + + +DVN+GCP++ + K G+GS LL
Sbjct: 64 QVEKPYSLQLYGGDPEAMGLAAAVGKSHGA-QLLDVNMGCPVKKVTKNGAGSALLGDPPR 122
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
+++ M E S LP+T K R+G + ++ G + + +H RTREQ Y+
Sbjct: 123 AAAIVRAMREASGLPVTCKIRSGWDAGSRNYLQMAAALQEAGCAGLAIHPRTREQGYSGL 182
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW I + P+
Sbjct: 183 ADWSVIAD-----------VKRHFPEL--------------------------------- 198
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
PL+GNGD+ + ED ++++ VMIGR AL PWIF+E+
Sbjct: 199 -----PLFGNGDVRTPED-ARRMQETTGCDFVMIGRAALGNPWIFREL 240
>gi|78044326|ref|YP_361166.1| nifR3 family TIM-barrel protein [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996441|gb|ABB15340.1| putative TIM-barrel protein, NifR3 family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 321
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 138/347 (39%), Gaps = 111/347 (31%)
Query: 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK 308
++ +++I + + ++P+ V + FR +C+ +GA +T +EM LL + + +I
Sbjct: 2 SATRREIKLKNPVIVAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMI- 60
Query: 309 RHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
DL G E M V
Sbjct: 61 -----DLQG-------------------EAMPV--------------------------- 69
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
VQ+ G++P + + +++EE +D+N+GCP I K G G+ L+ + + +
Sbjct: 70 ---AVQIFGSSPEKMAEAARIVEEAGA-SMIDINMGCPAPKIVKNGEGAALMLKPELAEK 125
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQA 486
++ + S+P++VK R G D+N ++ F + GA LIT+HGRTREQ Y+ +A
Sbjct: 126 IVMAVKNAVSVPVSVKIRKGF--DDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGKA 183
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW+ I + Q
Sbjct: 184 DWEIIRRVKQAVK----------------------------------------------- 196
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGD+ S + E L+ + + VMIGR + PW+ Q+I
Sbjct: 197 ---VKVAGNGDVDSPQKAKEMLELT-GVDFVMIGRAVMGNPWLIQQI 239
>gi|389578837|ref|ZP_10168864.1| putative TIM-barrel protein, nifR3 family [Desulfobacter postgatei
2ac9]
gi|389400472|gb|EIM62694.1| putative TIM-barrel protein, nifR3 family [Desulfobacter postgatei
2ac9]
Length = 322
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/343 (20%), Positives = 126/343 (36%), Gaps = 106/343 (30%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K ++ G +L+PL + NLPFR++ K G + CSEM A + ++ + L+K E+
Sbjct: 4 KDLEINGVTFLAPLAGITNLPFRKMVKDCGCAVVCSEMISAKGIFYNAEKTITLLKSQEN 63
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E VQ+ G++P + + ++ + D +D+N GC + + KQG+G L++
Sbjct: 64 ERPLSVQIFGSDPVSMGQAAAVINDLGTADIIDINFGCSVRKVIKQGAGVALMK------ 117
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
NP + K ++
Sbjct: 118 ------NPALARK-------------------------------------------ILKA 128
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + + LP T+K R+G + D G I H RT Q + +ADW I
Sbjct: 129 VRDATPLPFTIKIRSGWDPSGDQAVTLAKIAEDQGVDAIAFHPRTAVQGFRGKADWQLIA 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ Q P+
Sbjct: 189 RLKQAVR--------------------------------------------------IPV 198
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGDI++ +D + L ++ VM+GR A+ P+I +I++
Sbjct: 199 IGNGDIITPQDAGDMLSRT-GCDAVMVGRAAMANPFILSQIEQ 240
>gi|188584754|ref|YP_001916299.1| nifR3 family TIM-barrel protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349441|gb|ACB83711.1| TIM-barrel protein, nifR3 family [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 327
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 132/334 (39%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ ++P+ V + P+RR+ K+ + C EM A ++ + + ++ H + Q+
Sbjct: 15 IIVAPMAGVTDYPYRRILAKFSPGLICGEMVSAKGMVYGNKKTEEMVIHHNQGVHYSQQI 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++P V+ LE + VD +DVN+GCP I K G GS LL++ +L
Sbjct: 75 FGSDPKVMADAAVKLE-NLGVDSIDVNMGCPAPKIVKNGEGSALLKKPHL---------- 123
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
I++ ++ +N LP
Sbjct: 124 -----------------------------------------AQEIVREIVNSVN----LP 138
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G + ++ + ++ G + +HGRT EQ+Y+ +ADW+ + K
Sbjct: 139 VTVKIRKGFDRKSSDPLELALRLQEVGIKALAVHGRTCEQQYSGKADWEVVAK------- 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ N++ P+ GNGDI S
Sbjct: 192 ----LKNYL---------------------------------------DIPVIGNGDIFS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED +L+ + + G+M+GRG + PW+ ++ K
Sbjct: 209 SEDAVSALEMT-ACDGIMLGRGLMGNPWLIEQTK 241
>gi|374375096|ref|ZP_09632754.1| tRNA-U20-dihydrouridine synthase [Niabella soli DSM 19437]
gi|373231936|gb|EHP51731.1| tRNA-U20-dihydrouridine synthase [Niabella soli DSM 19437]
Length = 346
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/334 (24%), Positives = 136/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK GAD+ +E + L++ + IK D+F +
Sbjct: 14 LLLAPMEDVSDPPFRAVCKDNGADLMYTEFISSEGLIRDA------IKSRRKLDIFDYER 67
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
P+ G+Q+ G +
Sbjct: 68 ------------------------------PV-------------------GIQIFGGDE 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
L+ ++++ D +D+N GCP++ + +G+G+G+L+ +++ + + + ++LP
Sbjct: 79 ESLSLAAKIVDVTQP-DLLDINFGCPVKKVALKGAGAGVLKDVDLMVRLTEAVVKSTTLP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ I + +D G + +HGRTR Q Y +ADW I K
Sbjct: 138 VTVKTRLGWDENTLNIEEVAERLQDVGIKALAIHGRTRCQMYKGEADWALIGKV------ 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ P++GNGDI S
Sbjct: 192 KNN------PRIN------------------------------------IPIFGNGDIDS 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E K + G+MIGR A+ PWIF+EIK
Sbjct: 210 PQKALE-YKNRYGVDGIMIGRAAIGYPWIFREIK 242
>gi|383451781|ref|YP_005358502.1| tRNA-dihydrouridine synthase [Flavobacterium indicum GPTSA100-9]
gi|380503403|emb|CCG54445.1| Probable tRNA-dihydrouridine synthase [Flavobacterium indicum
GPTSA100-9]
Length = 331
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 50/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G + + +++E + D VD+N GCP++ + +G+G+G+L+ +++ +
Sbjct: 70 GIQIFGGDEEAMEMSAKIVE-TVQPDLVDINFGCPVKKVVCKGAGAGVLKDVDLMVRLTK 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + +SLP+TVKTR G +++ I + +D G +T+H RTR Q Y +DW +I
Sbjct: 129 AVIKGTSLPVTVKTRLGWDENSINIDEVAERLQDIGVQALTVHARTRAQMYKGHSDWTHI 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
E+ NN P+ IT+ P
Sbjct: 189 ERIK------NN------PR--------ITM----------------------------P 200
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
++GNGDI S E E K + G+MIGR A+ PWIF EIK
Sbjct: 201 IFGNGDIDSPEKALE-YKNKYGLDGMMIGRAAIGYPWIFNEIKH 243
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFRRLCK GAD+ SE + L++ + + + + E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRRLCKMHGADLMYSEFISSEGLIRDAMKSKKKLDIFDYERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
G + + +++ E + D VD+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGGDEEAMEMSAKIV-ETVQPDLVDINFGCPVKKVVCKGAGAGVLKDVDLM 123
>gi|210623235|ref|ZP_03293674.1| hypothetical protein CLOHIR_01624 [Clostridium hiranonis DSM 13275]
gi|210153772|gb|EEA84778.1| hypothetical protein CLOHIR_01624 [Clostridium hiranonis DSM 13275]
Length = 322
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 96/222 (43%), Gaps = 52/222 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ G+ P + T++L E + +D+N+GCP + K G GS L++ + VI
Sbjct: 68 AVQIFGSEPEFIAGATEILNEHSN-EILDINMGCPAPKVVKNGDGSALMKTPELAAKVIE 126
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ S P+TVK R G +D+ F GA IT+HGRTR Q Y+ ADWD I
Sbjct: 127 AAAKKSKKPVTVKFRKGWDEDSINAVEFAKMAEASGAQAITIHGRTRAQYYSGTADWDII 186
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
E+ I+ ++ P
Sbjct: 187 EE----------------------------------------------IKNAVKI----P 196
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGDI++ ED +++K +MIGRGA PWIF I
Sbjct: 197 VIGNGDIVTIEDAI-NIRKKTGCDAIMIGRGAQGNPWIFNRI 237
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+ +++L+P+ V +L FR +CK++G+ + +EM A L + ++K E E
Sbjct: 9 ENEVFLAPMAGVTDLAFRLICKEYGSGLLYTEMINAKALCYDDEKTKGMLKIEEEEHPVA 68
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VQ+ G+ P + T++L E + + +D+N+GCP + K G GS L++ L
Sbjct: 69 VQIFGSEPEFIAGATEILNEH-SNEILDINMGCPAPKVVKNGDGSALMKTPEL 120
>gi|119358060|ref|YP_912704.1| nifR3 family TIM-barrel protein [Chlorobium phaeobacteroides DSM
266]
gi|119355409|gb|ABL66280.1| tRNA-U20-dihydrouridine synthase [Chlorobium phaeobacteroides DSM
266]
Length = 347
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 132/342 (38%), Gaps = 109/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
ID + L+P+ V + FR+LCK++GADI V TE + + ++R +
Sbjct: 6 IDIDRPVILAPMEDVTDRAFRQLCKRFGADI------VYTEFVSAEA-----LRRGAEKT 54
Query: 315 LFGVQL-CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
L + L G P V
Sbjct: 55 LRKLVLEAGERP---------------------------------------------VAV 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ G+ + + T + EE DF+D+N GCP + + +G+G+ LL+ + ++ +
Sbjct: 70 QIFGSTVESMVEATAVAEE-YAPDFIDINFGCPTKKVAGKGAGAALLREPGKMAAIAEAV 128
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
SSLP+T KTR G D+ I + + + D G + +HGRTR Y +ADW++I +
Sbjct: 129 VRRSSLPVTAKTRIGWDHDSINIIDVLRRLEDAGIQALAIHGRTRSDMYKGRADWNWIAE 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
H R P+
Sbjct: 189 AKN--------------------------HARI------------------------PVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI S ED + + + G+MIGRGA+ P+IF + K
Sbjct: 199 ANGDIWSAEDALAMFRHTGA-DGIMIGRGAIGNPFIFGQAKH 239
>gi|225572777|ref|ZP_03781532.1| hypothetical protein RUMHYD_00968 [Blautia hydrogenotrophica DSM
10507]
gi|225039834|gb|EEG50080.1| TIM-barrel protein, nifR3 family [Blautia hydrogenotrophica DSM
10507]
Length = 320
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 134/333 (40%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V +LPFR LCK+ GA + C EM A + + +L++ H +E +QL
Sbjct: 14 LILAPMAGVTDLPFRLLCKEMGAGLLCMEMVSAKAIYYKNKNTESLMEIHPAEHPVSLQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++ ++ + +EE+ + +D+N+GCP+ + G GS LL+ L
Sbjct: 74 FGSDADLMAQIATQIEER-PFEILDINMGCPVPKVVNNGEGSALLKNPKLIR-------- 124
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++TK + + + + V G P++ + E++ +
Sbjct: 125 EIVTKVSGAIRKPLTVKVRIGFEGYPVDVV------------------------EIAKI- 159
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
D GA+ I +HGRTREQ Y+ ADWD I +
Sbjct: 160 ----------------------IEDSGAAAIAVHGRTREQYYSGHADWDAIRR------- 190
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+++ Q+ P+ GNGD+ S
Sbjct: 191 ---------------------------------------VKEAVQI----PVIGNGDVDS 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ + L+++ G+MIGR A PWIF+EI
Sbjct: 208 PQKAVQLLEET-GCDGIMIGRAAQGNPWIFREI 239
>gi|406899257|gb|EKD42578.1| tRNA-dihydrouridine synthase [uncultured bacterium]
Length = 324
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 128/341 (37%), Gaps = 107/341 (31%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+L ++P+ + +LPFRRL K +GA + ++M A L + L+ SE
Sbjct: 16 RLIMAPMCNITHLPFRRLIKNYGAGLVMTQMVSAKALTMGCVKTKKLLSFDLSER----- 70
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
PI F Q+ GNN
Sbjct: 71 -------------------------------PIAF-------------------QVFGNN 80
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
VL + +L++ + D VD+N+GCP + I G GS LL+ +++ M +V +
Sbjct: 81 ATVLAEAAVILQD-LGADLVDLNMGCPAKKIVNDGGGSALLKNPLFTANILEAMRKVLRI 139
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P T+K R G K N + G ITLHGRT+ Q Y+ ADW+ + +
Sbjct: 140 PFTIKMRAGYDKYNEEFLSIAQMAERCGVDGITLHGRTKTQGYSGLADWELVRQ------ 193
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
L R P+ GNGD+
Sbjct: 194 ----------------------LKAAIR----------------------IPVIGNGDVN 209
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ E L ++ VMIGR A+ +PW F+ + E+K F+
Sbjct: 210 APEKVGLMLSQT-GCDAVMIGRAAVSEPWFFKSVLEEKSFE 249
>gi|169824686|ref|YP_001692297.1| nitrogen regulation protein [Finegoldia magna ATCC 29328]
gi|167831491|dbj|BAG08407.1| nitrogen regulation protein [Finegoldia magna ATCC 29328]
Length = 305
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 105/225 (46%), Gaps = 51/225 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQ+ G+ P ++ T+ L E +D+N+GCP I+K G GS L+ N+ + VI
Sbjct: 63 SVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDVIR 122
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ LP++VK R GI +++ N+M
Sbjct: 123 ACKNNTDLPVSVKFRLGIDENS---MNYM------------------------------- 148
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ AQ+C R ITLH RTR+ Y+ +ADW +I++ + P
Sbjct: 149 -QLAQICER--------------LKVDYITLHARTRKMFYSGEADWLHIKRVVENVD-IP 192
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
++GNGD + ED ++++ S + GV++ RGA+ P+IF + + K
Sbjct: 193 VFGNGDCFTKEDIRKNMEYS-NCDGVLLARGAMQNPFIFSDDENK 236
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ L+L+PL V ++PFR LC + GA + +EM A L + L+ E
Sbjct: 1 MNLNSNLFLAPLAGVTDIPFRILCGELGAGLCFTEMISAKGLYYDDKKTKKLLDTDPREK 60
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG-- 372
VQ+ G+ P ++ T+ L E +D+N+GCP I+K G GS L+ NL
Sbjct: 61 STSVQIFGHEPEIIAYATRFLTENYNFKSIDINMGCPAPKIFKNGDGSALMGDLNLAEDV 120
Query: 373 VQLCGNN 379
++ C NN
Sbjct: 121 IRACKNN 127
>gi|222823251|ref|YP_002574824.1| tRNA-dihydrouridine synthase B [Campylobacter lari RM2100]
gi|222538472|gb|ACM63573.1| tRNA-dihydrouridine synthase B [Campylobacter lari RM2100]
Length = 308
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/345 (26%), Positives = 142/345 (41%), Gaps = 111/345 (32%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LP R L K++GADIT +E++ S+ AL+
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPLRNLVKQFGADITI------SEMISSN----ALV------ 45
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
Y +K ++LE+ + N + V
Sbjct: 46 ------------YESSKTLKMLEKA---------------------------ELENPYIV 66
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ G++ V+ K ++L +D +D N GCP+ + KQ +GS LLQ + LQ ++ +
Sbjct: 67 QIAGSDESVICKAVEILNRFDFIDGIDFNCGCPVNKVIKQCAGSALLQDLDKLQRILELI 126
Query: 434 NEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ S+ T VK R G K + I
Sbjct: 127 KKTSNKKSTSVKVRLGFDKKDPI------------------------------------- 149
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
A+ C + G I++HGRTR+Q Y+ AD++ I A+ PL
Sbjct: 150 AIAKAC--------------ENAGVDFISMHGRTRKQMYSGNADYEAIA-LAKENIKIPL 194
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
NGDI ED + + K + +MIGR ++ KPWIF EIK K
Sbjct: 195 VANGDI--SEDNAKEVFKITNCDALMIGRASVGKPWIFYEIKTGK 237
>gi|427385047|ref|ZP_18881552.1| hypothetical protein HMPREF9447_02585 [Bacteroides oleiciplenus YIT
12058]
gi|425727215|gb|EKU90075.1| hypothetical protein HMPREF9447_02585 [Bacteroides oleiciplenus YIT
12058]
Length = 329
Score = 100 bits (249), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 135/334 (40%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR +CKK+GAD+ V TE + S ALI+
Sbjct: 13 ILLAPMEDVTDPAFRLMCKKFGADM------VYTEFVSSD----ALIRS----------- 51
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
++K Q L + + +Q+ G +
Sbjct: 52 -------VSKTEQKLN---------------------------ISDKERPVAIQIYGKDT 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE D +D+N GCP++ + +G+G+G+LQ + + + + +P
Sbjct: 78 ETMVEAARIVEEARP-DILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + +D G + +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDANNKIIVELAEQLQDCGIAALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N +H P+ GNGD+ +
Sbjct: 192 KNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ E + +MIGR + +PWIF+E++
Sbjct: 209 PQRAKECFDLY-GVDAIMIGRASFGRPWIFKEVR 241
>gi|46447621|ref|YP_008986.1| hypothetical protein pc1987 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401262|emb|CAF24711.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 297
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 100/223 (44%), Gaps = 51/223 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + + +++EE + D VD+N GCP++ I K GSGSGLL+ ++ ++
Sbjct: 27 IGGQLCGSKPSIAGQAAKIIEE-LGFDIVDLNCGCPVDKITKDGSGSGLLKTPELIGEIV 85
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
M +P+TVK R G + + N + GA I +HGRTR+Q Y A+W+Y
Sbjct: 86 CNMVSAVKIPVTVKIRAGWDEQQIQVENIVQIVEQAGAQAICIHGRTRQQGYRGPANWEY 145
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I++ +L ++ II
Sbjct: 146 IKR-GKLAAKSIKII--------------------------------------------- 159
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+L + ++ V++ RG L +PWI Q+I
Sbjct: 160 ---GNGDVLDGPSAAKMFCET-GCDAVLVARGTLGQPWIVQDI 198
>gi|336119016|ref|YP_004573788.1| tRNA-dihydrouridine synthase [Microlunatus phosphovorus NM-1]
gi|334686800|dbj|BAK36385.1| putative tRNA-dihydrouridine synthase [Microlunatus phosphovorus
NM-1]
Length = 394
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 54/224 (24%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G +P ++ + T++L + VD VD+N GCP+ + ++G G L + L+S++T
Sbjct: 91 VQLYGVDPAIMGRATEILITEHEVDHVDLNFGCPVPKVTRKGGGGALPYKRRWLESILTS 150
Query: 433 MNEVSS---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ +S +P+T+KTR GI D+ + G + I LHGRT +Q Y +ADW
Sbjct: 151 VVAAASPHGVPVTMKTRIGIDDDHQTYLDAGRIAEQAGCAAIALHGRTVQQAYAGEADWA 210
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
I Q S
Sbjct: 211 AIAALKQSVS-------------------------------------------------- 220
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDI D E ++++ GV+IGRG L +PW+F+++
Sbjct: 221 IPVLGNGDIWEAADALEMVRQT-GADGVVIGRGCLGRPWLFRDL 263
>gi|58698977|ref|ZP_00373831.1| dihydrouridine synthase [Wolbachia endosymbiont of Drosophila
ananassae]
gi|58534506|gb|EAL58651.1| dihydrouridine synthase [Wolbachia endosymbiont of Drosophila
ananassae]
Length = 302
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 127/327 (38%), Gaps = 110/327 (33%)
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
++ V + PFR + KK GA + SEM + ++ + Q +++ + + L VQL G P
Sbjct: 1 MSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---LQKAKVDALTAVQLAGCEP 57
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
V+ + +L E M +D+N GCP++ + +GS L++ K
Sbjct: 58 DVMAEAAKL-NEDMGAKIIDINFGCPVKKVVNGYAGSALMRDEK---------------K 101
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445
+++E +V+ +N +P+TVK
Sbjct: 102 AAEIIE------------------------------------AVVKAVN----MPVTVKM 121
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 122 RTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV----------- 170
Query: 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565
+EQ P+ NGDI + D
Sbjct: 171 ---------------------KEQ------------------VKIPVIVNGDIKNLNDIQ 191
Query: 566 ESLKKSPSISGVMIGRGALIKPWIFQE 592
+LK+S + GVMIGRGA KPW+ +
Sbjct: 192 NALKESGA-DGVMIGRGAYGKPWLINQ 217
>gi|294629227|ref|ZP_06707787.1| tRNA-dihydrouridine synthase [Streptomyces sp. e14]
gi|292832560|gb|EFF90909.1| tRNA-dihydrouridine synthase [Streptomyces sp. e14]
Length = 416
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 136/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 52 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 97
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 98 --------------KTMQL-----------------IRFDATEQPRS----------IQL 116
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 117 YGVDPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAIVREAVS 176
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G S I LHGRT Q Y ADWD I +
Sbjct: 177 GAGDLPVTMKMRKGIDDDHLTYLDAGRIAVEEGVSAIALHGRTTAQHYGGTADWDAIAR- 235
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 236 ----------LKEHVPEI--------------------------------------PVLG 247
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S D ++++ GV++GRG L +PW+F ++
Sbjct: 248 NGDIWSAGDALRMVRET-GCDGVVVGRGCLGRPWLFADL 285
>gi|116071136|ref|ZP_01468405.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Synechococcus sp.
BL107]
gi|116066541|gb|EAU72298.1| Dihydrouridine synthase TIM-barrel protein nifR3 [Synechococcus sp.
BL107]
Length = 338
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 52/252 (20%)
Query: 343 FVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402
F ++ +E + G LL VQL + P + + EQ VD+N
Sbjct: 55 FTEMVNATSLELGHGYGKMDDLLSEDGPIAVQLFDHRPQAMADAARR-AEQAGAFLVDIN 113
Query: 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK 462
+GCP+ I K+G GSGL++ ++ ++ + E S+P+TVKTR G N+ + +
Sbjct: 114 MGCPVRKIAKKGGGSGLIRDPDLATQILEAVVEAVSIPVTVKTRLGWCGSNSDPITWCRQ 173
Query: 463 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522
++ GA ++TLHGRTREQ + QADW+ I Q +
Sbjct: 174 LQNAGAQMLTLHGRTREQGFKGQADWNAIAAVKQALT----------------------- 210
Query: 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582
P+ NGDI S D + L + GVM+GRG
Sbjct: 211 ---------------------------IPVIANGDINSPTDALQCLDVT-GADGVMVGRG 242
Query: 583 ALIKPWIFQEIK 594
+ PW+ +I+
Sbjct: 243 TMGSPWLVGQIE 254
>gi|166030713|ref|ZP_02233542.1| hypothetical protein DORFOR_00387 [Dorea formicigenerans ATCC
27755]
gi|166029505|gb|EDR48262.1| TIM-barrel protein, nifR3 family [Dorea formicigenerans ATCC 27755]
Length = 318
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 52/223 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G++P ++++ + +E+ + +D+N+GCP+ + K G GS L++ ++ +++
Sbjct: 69 LQLFGSDPKIISEQAKRIED-LPFQILDINMGCPVPKVVKNGEGSALMKNPKLVFEIVSQ 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + P+TVK R G D+ + GAS + +HGRTREQ Y+ +ADWD I
Sbjct: 128 LVKAIEKPVTVKIRKGFDDDHINAVEIAKIAEEAGASAVAVHGRTREQYYSGEADWDIIR 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + +H P+
Sbjct: 188 QVKE------------------------AVH--------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S E E ++K GVMIGRG PWIF+E+ E
Sbjct: 198 IGNGDVTSAEKAAE-MRKITGCDGVMIGRGVQGNPWIFRELAE 239
Score = 74.7 bits (182), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ V +LPFR LCK+ GA + C EM A L + L+ H E +QL G
Sbjct: 14 LAPMAGVTDLPFRLLCKEQGAGLLCMEMISAKALQYKNKNTKVLLAIHPQEYPVSLQLFG 73
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
++P ++++ + +E+ + +D+N+GCP+ + K G GS L++ L
Sbjct: 74 SDPKIISEQAKRIED-LPFQILDINMGCPVPKVVKNGEGSALMKNPKL 120
>gi|429741906|ref|ZP_19275556.1| TIM-barrel protein, nifR3 family [Porphyromonas catoniae F0037]
gi|429158154|gb|EKY00721.1| TIM-barrel protein, nifR3 family [Porphyromonas catoniae F0037]
Length = 333
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 138/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V ++ FR LCK++GAD+ V TE L + ALI+ Q+
Sbjct: 13 LLLAPMEDVTDVAFRLLCKRFGADL------VYTEFLSAD----ALIR----------QV 52
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G K T EE+ P+ +Q+ G
Sbjct: 53 AGTT----RKLTIDPEER------------PV-------------------AIQIYGREV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + ++ E + +D+N GCP++ + +G+GSG+L+ +++ +++ + + +P
Sbjct: 78 EPMVEAARIAEAAGP-ELLDLNFGCPVKRVAGKGAGSGMLRCPDLMLRIVSEVVKAVQIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G ++ II +D G +T+HGRTR Q YT ADW I +
Sbjct: 137 VTVKTRLGWDNESKIIVELAEALQDCGIQALTIHGRTRAQMYTGSADWSLIGAV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGDI S
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDITS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E+ + + VMIGR + +PW+F+++K
Sbjct: 209 GEEARRAFNDY-GVDAVMIGRATIGQPWVFEQMK 241
>gi|307720977|ref|YP_003892117.1| nifR3 family TIM-barrel protein [Sulfurimonas autotrophica DSM
16294]
gi|306979070|gb|ADN09105.1| TIM-barrel protein, nifR3 family [Sulfurimonas autotrophica DSM
16294]
Length = 317
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 139/345 (40%), Gaps = 110/345 (31%)
Query: 252 KKKIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
K+ + + LY L+PL +LPFR + KK+GAD+T S E+L S+ H
Sbjct: 2 KENLSFDKPLYVLAPLAGFTDLPFRSVVKKFGADLTVS------EMLSSNALA------H 49
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
S+ K +LE+ +L P
Sbjct: 50 GSQ----------------KTLHMLEKS--------SLEDP------------------- 66
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
+ VQ+ G + ++ ++L EQ +D +D+N GCP+ + GSGS LL ++ +I
Sbjct: 67 YSVQIAGADVDIVRSAVEILNEQEGIDIIDLNCGCPVPKVVGHGSGSSLLLDLPLMGEII 126
Query: 431 TCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ + S+ +T VK R G + ++ + +D GA I +HGRTR ++ D+D
Sbjct: 127 KTIKDTSNKSMTSVKIRLGFEEKKHV--DIAKVVQDSGADFIAVHGRTRAGKFKAAVDYD 184
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
I R K+A
Sbjct: 185 AI--------------------------------------REIKEA------------VD 194
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ NGDI SYE L+ + + GVMIGRGA+ PWIF ++K
Sbjct: 195 IPVIANGDIDSYEKAKWVLEHTGA-DGVMIGRGAVGAPWIFHQLK 238
>gi|395219899|ref|ZP_10402594.1| nifR3 family TIM-barrel protein [Pontibacter sp. BAB1700]
gi|394453784|gb|EJF08597.1| nifR3 family TIM-barrel protein [Pontibacter sp. BAB1700]
Length = 329
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 141/351 (40%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR++CK GAD+ +E + L++ + +
Sbjct: 1 MVKIANIELGEF----PLLLAPMEDVSDPPFRKVCKANGADLMYTEFISSEGLIRDAAKS 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ + E G+Q+ G++ + + ++ Q D +D+N GCP++ + +G+G+
Sbjct: 57 VQKLDIFDYERPIGIQIFGSDIDSMREAA-IVSSQAGPDLIDINYGCPVKNVACKGAGAA 115
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
LL+ + K ++ EE
Sbjct: 116 LLRD---------------IPKMVKMTEE------------------------------- 129
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+ + + LP+TVKTR G ++ I + +D G +++HGRTR Q Y
Sbjct: 130 ---------IVKATHLPVTVKTRLGWDENTKYIVETAERLQDIGIKALSIHGRTRVQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW I + ++N +H
Sbjct: 181 GEADWSLIAEV-----KNNPRMH------------------------------------- 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S + E K + G+MIGR ++ PWIF EIK
Sbjct: 199 ------IPIFGNGDIDSPQKALE-YKNRYGVDGIMIGRASIGHPWIFNEIK 242
>gi|444306134|ref|ZP_21141906.1| tRNA-dihydrouridine synthase Dus [Arthrobacter sp. SJCon]
gi|443481592|gb|ELT44515.1| tRNA-dihydrouridine synthase Dus [Arthrobacter sp. SJCon]
Length = 393
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/234 (24%), Positives = 103/234 (44%), Gaps = 52/234 (22%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + +EM + L++ +P+ +I + E + VQL
Sbjct: 28 VILAPMAGITNSAFRRLCREYGGGMYVAEMVTSRALVERTPESLRIISHDDDEKVRSVQL 87
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 88 YGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF--------- 138
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+I+Q+ + + ++P
Sbjct: 139 ------------------------------------------TSIVQTAVKEAAK-GNIP 155
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+T+K R GI D+ + RD G + + LHGRT Q Y+ QADW I +
Sbjct: 156 LTIKMRKGIDDDHLTYLDAGRIARDSGVAAVALHGRTAAQFYSGQADWSAIARL 209
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 98/229 (42%), Gaps = 61/229 (26%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P + ++L E+ D +D+N GCP+ + ++G GS L + ++ S++ T
Sbjct: 85 VQLYGVDPVTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTSIVQT 144
Query: 432 CMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E + ++P+T+K R GI D+
Sbjct: 145 AVKEAAKGNIPLTIKMRKGIDDDH------------------------------------ 168
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
L D I RD G + + LHGRT Q Y+ QADW I + +
Sbjct: 169 -------LTYLDAGRIA------RDSGVAAVALHGRTAAQFYSGQADWSAIARLREALPD 215
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ V+ GR PW+F +++
Sbjct: 216 IPVLGNGDIWSAEDAVRMVRETGVDGVVVGRGCQGR-----PWLFGDLQ 259
>gi|445115320|ref|ZP_21378195.1| tRNA dihydrouridine synthase A [Prevotella nigrescens F0103]
gi|444840431|gb|ELX67463.1| tRNA dihydrouridine synthase A [Prevotella nigrescens F0103]
Length = 323
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 138/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + V TE + + A+I+ +S
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAM------VYTEFVSAD----AVIRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L K EE+ P+ G+Q+ G +
Sbjct: 55 ------TLNKIVIDEEER------------PV-------------------GIQIYGKDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++E Q+ D +D+N GCP++ + +G+GSG+L+ +L + + + + P
Sbjct: 78 ESMVEAAKVVE-QVKPDVIDINFGCPVKKVANKGAGSGMLKNIPLLLEITREVVKAVNTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + +D G +T+HGRTR Q YT +ADW I + +
Sbjct: 137 VTVKTRLGWDDNNLIITDLAEQLQDCGIQALTIHGRTRAQMYTGEADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P+ GNGD+ S
Sbjct: 192 KNPRIH-------------------------------------------IPIIGNGDVTS 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D + S + +MIGR PW+F E
Sbjct: 209 VFDAQKRF-DSYGVDAIMIGRATFGCPWLFSE 239
>gi|91774082|ref|YP_566774.1| dihydrouridine synthase, DuS [Methanococcoides burtonii DSM 6242]
gi|91713097|gb|ABE53024.1| tRNA-dihydrouridine synthase [Methanococcoides burtonii DSM 6242]
Length = 318
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 100/237 (42%), Gaps = 57/237 (24%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
++D G L L+PL V NL FR +CKK+GA + TE++ S A++ + S
Sbjct: 5 RVDLPGNLLLAPLAEVTNLAFRLMCKKYGASLC------FTEMISSD----AVVYGNASS 54
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ G+ P FG+
Sbjct: 55 AMRGITCDEERP---------------------------------------------FGL 69
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
QL GN+P V+T+ +LE+ D +D+NLGCP I G GS LL+ ++ + + +
Sbjct: 70 QLFGNSPEVITEAALVLEDMFYPDMIDINLGCPAPVITNAGCGSALLESPELVSDIFSTL 129
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
E P+T K R + + + + D G IT+HGRT EQ Y+ AD Y
Sbjct: 130 CEGVDTPVTAKIR--VLESRAATLDMAHRLEDAGVCAITVHGRTCEQGYSGTADHSY 184
>gi|343494479|ref|ZP_08732740.1| NifR3/Smm1 family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342825138|gb|EGU59638.1| NifR3/Smm1 family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 322
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 128/333 (38%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L ++P+ V + PFR LC ++GA + SEM + S+P+ W K +
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGLAVSEM------MSSNPKVWKTAKSQQ--------- 56
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+++ SG + VQ+ G +P
Sbjct: 57 --------------------------------RMVHEGESG--------IRSVQIAGADP 76
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + Q E +D+N+GCP + + K+ +GS LLQ +I++ ++T + +P
Sbjct: 77 QQMAEAAQYNVENGA-QIIDINMGCPAKKVNKKLAGSALLQHPDIIEKILTAVVNAVDVP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+KTRTG + DN D G + LHGRTR Y +A++D I
Sbjct: 136 VTLKTRTGWNTDNKNCVQIAKMAEDCGIQALALHGRTRACMYKGEAEYDSI--------- 186
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
K A+ P+ NGDI S
Sbjct: 187 -----------------------------------------KAAKAAVSIPVIANGDIDS 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
E L+ + + +MIGR A +PWIFQEI
Sbjct: 206 PEKAKYVLEYTGA-DALMIGRPAQGRPWIFQEI 237
>gi|416113476|ref|ZP_11593333.1| tRNA dihydrouridine synthase B [Campylobacter concisus UNSWCD]
gi|384578522|gb|EIF07786.1| tRNA dihydrouridine synthase B [Campylobacter concisus UNSWCD]
Length = 307
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 143/349 (40%), Gaps = 112/349 (32%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL-KSSPQEWALIKRHES 312
ID+ K L+L+PL +LP R + KK+G D+T SEM A L+ +SS + ++K+ +
Sbjct: 2 IDFSKKPLFLAPLAGFSDLPLRSVVKKFGCDVTVSEMISANALVYESSDKTLEMLKKSPN 61
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
E+ PYV
Sbjct: 62 EE----------PYV--------------------------------------------- 66
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++ L K Q++ + + +D+N GCP+ + +QG+GS LL + LQ++I+
Sbjct: 67 VQIAGSDIENLKKAVQIINKFDGIYGLDLNCGCPVPKVVRQGAGSALLNDLDKLQNIISA 126
Query: 433 MNEVSSL-PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ VS+ ++VK R G + N
Sbjct: 127 IKSVSNKKSLSVKFRLGFNDKNE------------------------------------- 149
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
EK A+ C + GA I +HGRTR Y+ + D++ I + + P
Sbjct: 150 EKIAKAC--------------EEAGADYIAVHGRTRAGGYSAKVDYEAIARV-KASVKIP 194
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ NGDI + ++ E L + +MIGR ++ PWIF EIK K D
Sbjct: 195 VVANGDI-NAQNADEILNLTKC-DALMIGRASIGNPWIFHEIKTKTSVD 241
>gi|386840061|ref|YP_006245119.1| dihydrouridine synthase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100362|gb|AEY89246.1| dihydrouridine synthase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793355|gb|AGF63404.1| dihydrouridine synthase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 377
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 136/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 16 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 58
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 59 -----------KTMQL-----------------IRFDPSEQPRS----------IQLYGV 80
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 81 DPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVSGAG 140
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 141 DLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR---- 196
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 197 -------LKEHVPEI--------------------------------------PVLGNGD 211
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 212 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 246
>gi|58697366|ref|ZP_00372700.1| NifR3 family protein [Wolbachia endosymbiont of Drosophila
simulans]
gi|58536243|gb|EAL59783.1| NifR3 family protein [Wolbachia endosymbiont of Drosophila
simulans]
Length = 262
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 100/227 (44%), Gaps = 60/227 (26%)
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ----RANI 425
L VQL G P V+ + +L E M +D+N GCP++ + +GS L++ A I
Sbjct: 7 LTAVQLAGCEPDVMAEAAKL-NEDMGAKIIDINFGCPVKKVVNGYAGSALMRDEKKAAEI 65
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
+++V+ +N +P+TVK RTG + +N D GA +IT+HGRTR Q Y Q
Sbjct: 66 IEAVVKAVN----MPVTVKMRTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQ 121
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW ++ +EQ
Sbjct: 122 ADWKFVRNV--------------------------------KEQ---------------- 133
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
P+ NGDI + D +LK+S + GVMIGRGA KPW+ +
Sbjct: 134 --VKIPVIVNGDIKNLNDIQNALKESGA-DGVMIGRGAYGKPWLINQ 177
>gi|415712218|ref|ZP_11464714.1| NifR3-like protein [Gardnerella vaginalis 55152]
gi|388057445|gb|EIK80277.1| NifR3-like protein [Gardnerella vaginalis 55152]
Length = 384
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 136/351 (38%), Gaps = 104/351 (29%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IK + KI + LSP+ + N PFR +C+++G D + +EM A L+ +P+
Sbjct: 3 FSIKPVDLGKIHIATPVVLSPMAGITNWPFRVICREYGPDGLYVAEMITARALVARNPKA 62
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
L + SE + +QL G NP ++ + +++ ++ D VD+N GCP+ + ++G GS
Sbjct: 63 LRLCRFAPSEKVRSLQLYGVNPSIVEQAARIVVDENMADHVDLNFGCPVPKVTRRGGGSA 122
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
L + T LL+E
Sbjct: 123 LPWK-------------------TDLLQE------------------------------- 132
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
IL V++ + + +P+T K R GI +++ ++ G + +TLH RT + Y
Sbjct: 133 -ILHRVVSVCDS-AGIPVTAKFRVGIDENHETFMQAGHIAQEEGCAAVTLHARTTAEYYG 190
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+DW I + +P F
Sbjct: 191 GHSDWSRIAELVDALD---------IPVF------------------------------- 210
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGDI +D K++ +GV IGRG +PWIF +I+
Sbjct: 211 ----------GNGDIWGADDALAMFKET-GCAGVAIGRGCQGRPWIFADIR 250
>gi|399524272|ref|ZP_10764835.1| TIM-barrel protein, nifR3 family [Atopobium sp. ICM58]
gi|398374602|gb|EJN52198.1| TIM-barrel protein, nifR3 family [Atopobium sp. ICM58]
Length = 425
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/355 (22%), Positives = 140/355 (39%), Gaps = 91/355 (25%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++PFRRLC+ G E + L + WA ES G
Sbjct: 10 VVLAPMAGVTDVPFRRLCRIMG------ESGLPDHLRPTGIPSWAA----ES----GEGA 55
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR------------- 367
++P + +A+ VD G ++ + + L++
Sbjct: 56 TASSPQ-HPRDDAGEPRHVAIARVDAPAGL---YVTEMVTSRALVENNERTWDMVRPDPA 111
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
+ +QL G NP V+ K +L E+ + D +D+N GCP+ + K+G G+ L + ++
Sbjct: 112 ERVRSLQLYGVNPAVMAKAATMLVERDLTDHIDLNFGCPVPKVTKKGGGAALPWKRDLFT 171
Query: 428 SVITCMNEVS---------SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTR 478
++ + S +P+TVK R GI ++ + + GA+ +TLH RT+
Sbjct: 172 DLVGAVVRASHEAGERVGREIPVTVKIRIGIDSEHETATDAALSAQKLGAAALTLHARTQ 231
Query: 479 EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538
Q Y +A WD I + L
Sbjct: 232 NQHYAGRAHWDEIARLKDLLD--------------------------------------- 252
Query: 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P++GNGD+ D L+++ G+ +GRGA +PWIF++I
Sbjct: 253 -----------IPVFGNGDVFEAADALAMLERT-GCDGISVGRGAQGRPWIFRDI 295
>gi|315924890|ref|ZP_07921107.1| tRNA-dihydrouridine synthase B [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621789|gb|EFV01753.1| tRNA-dihydrouridine synthase B [Pseudoramibacter alactolyticus ATCC
23263]
Length = 322
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/338 (25%), Positives = 129/338 (38%), Gaps = 106/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
Q L L+PL NLPFR + KK+GAD AV TE++ ++ LF
Sbjct: 9 QVPLMLAPLAGYSNLPFRLMAKKYGAD------AVTTEMI-------------SAKGLF- 48
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
Y K +L+ CP E G+QL G
Sbjct: 49 --------YRDKKTAKLMAT------------CPEE---------------APAGIQLFG 73
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
++P ++ + F+D N GCP I K G G+ LL+ + L++++ M VS
Sbjct: 74 SDPAIIERVVAEQVNATPFAFIDFNAGCPAPKIVKNGDGAALLKDLSRLEAIVCRMKTVS 133
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
P+ VK R G + + + GA ++T+HGRTRE Y+ ADW I +
Sbjct: 134 IKPVHVKIRLGWDAGHRVAVEAAKRIEAAGADVLTVHGRTREAFYSGAADWPAIAEVKAA 193
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P+ NGD
Sbjct: 194 VSL--------------------------------------------------PVVANGD 203
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
I S E +L + G+M+GRGA+ P+IF+E+K+
Sbjct: 204 IDSPEAAAAALAAT-GADGLMVGRGAIGNPFIFREMKQ 240
>gi|302551272|ref|ZP_07303614.1| dihydrouridine synthase [Streptomyces viridochromogenes DSM 40736]
gi|302468890|gb|EFL31983.1| dihydrouridine synthase [Streptomyces viridochromogenes DSM 40736]
Length = 412
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/339 (24%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 48 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 93
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S VQL
Sbjct: 94 --------------KTMQL-----------------IHFDASERPRS----------VQL 112
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++ ++
Sbjct: 113 YGVDPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAILREAVS 172
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 173 GAGDLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR- 231
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 232 ----------LKEHVPEI--------------------------------------PVLG 243
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 244 NGDIWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFSDL 281
>gi|152967309|ref|YP_001363093.1| nifR3 family TIM-barrel protein [Kineococcus radiotolerans
SRS30216]
gi|151361826|gb|ABS04829.1| putative TIM-barrel protein, nifR3 family [Kineococcus
radiotolerans SRS30216]
Length = 388
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 53/225 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
+QL G +P + +++ E + D VD+N GCP+ + ++G GS L +A + +S++
Sbjct: 80 LQLYGVDPTTVAAAVRMVVEDDLADHVDLNFGCPVPKVTRKGGGSALPWKAELFRSIVRG 139
Query: 432 CMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S +P+TVK R GI D+ GA+ + LHGRT Q Y+ QADW+
Sbjct: 140 AVAEASRGGIPLTVKMRKGIDDDHLTYLQAGKAAEQEGAAAVALHGRTASQHYSGQADWE 199
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
I + + ++ T+
Sbjct: 200 AIARLKE---------------------TVTTI--------------------------- 211
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGD+ S ED E ++++ GV++GRG L +PW+F +++
Sbjct: 212 -PVLGNGDVWSAEDALEMVRRT-GCDGVVVGRGCLGRPWLFADLE 254
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N +R+LC++ G SEM + L++ + L+ SE +QL
Sbjct: 23 VVLAPMAGITNTAYRQLCREHGEGFYVSEMVTSRALVERHAETMRLVTFTASERPRSLQL 82
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
G +P + +++ E D VD+N GCP+ + ++G GS L +A LF
Sbjct: 83 YGVDPTTVAAAVRMVVEDDLADHVDLNFGCPVPKVTRKGGGSALPWKAELF 133
>gi|443243405|ref|YP_007376630.1| TRNA-dihydrouridine synthase [Nonlabens dokdonensis DSW-6]
gi|442800804|gb|AGC76609.1| TRNA-dihydrouridine synthase [Nonlabens dokdonensis DSW-6]
Length = 330
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 105/224 (46%), Gaps = 50/224 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G N + + +++E + D +D+N GCP++ + +G+G+G+L+ +++ S+
Sbjct: 70 GIQIFGANLDSMLQSVEIVE-RTKPDIIDINFGCPVKKVVSRGAGAGILKDIDLMVSLTE 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M + +SLPITVKTR G D+ I + +D G +++HGRTR Q Y A+W I
Sbjct: 129 AMVKHTSLPITVKTRLGWDDDSIKIMEVAERLQDVGIKALSIHGRTRAQMYKGNANWAPI 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ ++N IH P
Sbjct: 189 AEV-----KNNPRIH-------------------------------------------IP 200
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
++GNGD+ + E ++ + G MIGR ++ PW F+E+K
Sbjct: 201 IFGNGDVTTPE-LAMKMRDEYGLDGCMIGRASIGYPWFFREVKH 243
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E+E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRTLCKENGADVVFTEFISSEGLIRDAAKSTMKLDIYETERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
G N + + +++ E+ D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGANLDSMLQSVEIV-ERTKPDIIDINFGCPVKKVVSRGAGAGILKDIDLM 123
>gi|431796902|ref|YP_007223806.1| TIM-barrel protein, nifR3 family [Echinicola vietnamensis DSM
17526]
gi|430787667|gb|AGA77796.1| putative TIM-barrel protein, nifR3 family [Echinicola vietnamensis
DSM 17526]
Length = 333
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/253 (29%), Positives = 116/253 (45%), Gaps = 63/253 (24%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + +Q+ ++F G+Q+ GN + + + EQ D +D+N
Sbjct: 42 EFISSEGLIRDAAKSVQKLDIFEYERPIGIQIFGNEIDSMREAAAI-AEQAGPDILDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH--NFMP 461
GCP+ + +G+G+G+L + + S+ + + ++P+TVKTR G DNN I +
Sbjct: 101 GCPVNKVACKGAGAGILLDIDKMVSMTAEIVKAVNIPVTVKTRLGW--DNNTIRIVEVVE 158
Query: 462 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521
+ +D G I++H RTR+Q Y +ADW Y+ K ++N IH
Sbjct: 159 RLQDVGIQAISVHARTRKQMYKGEADWTYLAKI-----KENQRIH--------------- 198
Query: 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
PL+GNGDI S E E + + G+MIGR
Sbjct: 199 ----------------------------IPLFGNGDIDSPERARE-YRDRFGVDGMMIGR 229
Query: 582 GALIKPWIFQEIK 594
A+ PWIF EIK
Sbjct: 230 AAIGYPWIFNEIK 242
>gi|365121661|ref|ZP_09338577.1| hypothetical protein HMPREF1033_01923 [Tannerella sp.
6_1_58FAA_CT1]
gi|363645151|gb|EHL84425.1| hypothetical protein HMPREF1033_01923 [Tannerella sp.
6_1_58FAA_CT1]
Length = 327
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/335 (23%), Positives = 135/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++ FR +CK++GAD+ V TE + S ALI+
Sbjct: 13 VLLAPMEDVTDISFRLMCKEFGADM------VYTEFVSSD----ALIR------------ 50
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N K + EE+ P+ +Q+ G
Sbjct: 51 --NVSKTQAKLSIRNEER------------PV-------------------AIQIYGRET 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ ++ EE D +D+N GCP++ + +G+G+G+L+ + + + +P
Sbjct: 78 AAMADAARICEEA-CPDVLDINFGCPVKKVAGKGAGAGMLRDIPKMLEITRAVVNAVKIP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G D+ II + +D G + + +HGRTR Q YT +ADW I
Sbjct: 137 VTVKTRLGWDHDSRIIVELAEQLQDCGIAALAIHGRTRSQMYTGEADWSLI--------- 187
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
G+ +E K P+ GNGD+ +
Sbjct: 188 -----------------------GKVKENPRMK----------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ E +K + +M+GR ++ PWIF+EIK+
Sbjct: 209 PQIAREKFEKY-GVDAIMVGRASIGSPWIFKEIKQ 242
>gi|415705575|ref|ZP_11460846.1| NifR3-like protein [Gardnerella vaginalis 75712]
gi|388052297|gb|EIK75321.1| NifR3-like protein [Gardnerella vaginalis 75712]
Length = 384
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/351 (23%), Positives = 136/351 (38%), Gaps = 104/351 (29%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IK + KI + LSP+ + N PFR +C+++G D + +EM A L+ +P+
Sbjct: 3 FSIKPVDLGKIHIATPVVLSPMAGITNWPFRVICREYGPDGLYVAEMITARALVARNPKA 62
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
L + SE + +QL G NP ++ + +++ ++ D VD+N GCP+ + ++G GS
Sbjct: 63 LRLCRFAPSEKVRSLQLYGVNPSIVEQAARIVVDENMADHVDLNFGCPVPKVTRRGGGSA 122
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
L + T LL+E
Sbjct: 123 LPWK-------------------TDLLQE------------------------------- 132
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
IL V++ + + +P+T K R GI +++ ++ G + +TLH RT + Y
Sbjct: 133 -ILHRVVSVCDP-AGIPVTAKFRVGIDENHETFMQAGHIAQEEGCAAVTLHARTTAEYYG 190
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+DW I + +P F
Sbjct: 191 GHSDWSRIAELVDALD---------IPVF------------------------------- 210
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGDI +D K++ +GV IGRG +PWIF +I+
Sbjct: 211 ----------GNGDIWGADDALAMFKET-GCAGVAIGRGCQGRPWIFADIR 250
>gi|222148571|ref|YP_002549528.1| nitrogen regulation protein [Agrobacterium vitis S4]
gi|221735557|gb|ACM36520.1| nitrogen regulation protein [Agrobacterium vitis S4]
Length = 332
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 108/329 (32%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
++ L+P++ V +LPFR+L + GA + +EM + EL+ ++ + W+ +K
Sbjct: 20 RVVLAPMSGVTDLPFRQLAFRHGAGLVVTEMVASRELVFNAAESWSRLK----------- 68
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G+GL VQL G +
Sbjct: 69 -----------------------------------------GAGLTPHM----VQLAGRD 83
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P+ + + ++ E D +D+N+GCP + + +GS L++ I ++I + S+
Sbjct: 84 PHWMAEAAKIAEANGA-DIIDINMGCPAKKVIGGYAGSALMREPEIALAMIEATVKAVSI 142
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK R G D+ + + +D G IT+HGRTR Q Y +ADWD I
Sbjct: 143 PVTVKMRLGWDSDSINAPDLSRRAQDAGVQAITVHGRTRMQFYEGRADWDAIAAV----- 197
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
RD I PL NGDI
Sbjct: 198 RDAIYI---------------------------------------------PLIANGDID 212
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPW 588
+ D E L++S +M+GR +PW
Sbjct: 213 TLGDAQEILRRS-GADAIMLGRACQGRPW 240
>gi|295839031|ref|ZP_06825964.1| tRNA-dihydrouridine synthase [Streptomyces sp. SPB74]
gi|295827295|gb|EDY44581.2| tRNA-dihydrouridine synthase [Streptomyces sp. SPB74]
Length = 402
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 102/222 (45%), Gaps = 51/222 (22%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT- 431
+QL G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++
Sbjct: 101 IQLYGVDPATVGKAARMVREENLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAILRE 160
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ LP+T+K R GI +D+ + D G + I LHGRT Q Y ADWD I
Sbjct: 161 AVAGADGLPVTMKMRKGIDEDHLTAFDAGRIAVDEGITAIALHGRTTAQHYGGTADWDAI 220
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + +P+ P
Sbjct: 221 AR-----------LKEHVPEL--------------------------------------P 231
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGDI + ED ++++ GV++GRG L +PW+F ++
Sbjct: 232 VLGNGDIWTAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 272
>gi|284037281|ref|YP_003387211.1| hypothetical protein Slin_2392 [Spirosoma linguale DSM 74]
gi|283816574|gb|ADB38412.1| TIM-barrel protein, nifR3 family [Spirosoma linguale DSM 74]
Length = 329
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 113/252 (44%), Gaps = 59/252 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + +Q+ ++F G+QL G++ + +C ++ + D +D+N
Sbjct: 42 EFISSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDVETMGECARI-ASRANPDLIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+ LLQ + + + + + LP+TVKTR G + + +
Sbjct: 101 GCPVKNVACRGAGAALLQDIPKMVRMTDAVVKATHLPVTVKTRLGWDESTKNVGEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G +T+HGRTR Q Y +ADW TL
Sbjct: 161 QDIGIKALTVHGRTRVQMYKGEADW--------------------------------TLI 188
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
GR ++ + P++GNGDI S E E K + GVMIGR +
Sbjct: 189 GRIKDNPRIQ----------------IPIFGNGDIDSPEKAVE-YKNRFGVDGVMIGRAS 231
Query: 584 LIKPWIFQEIKE 595
+ PW+F EIK
Sbjct: 232 IGHPWVFNEIKH 243
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK GAD+ +E + L++ + + + E E G+QL
Sbjct: 14 LLLAPMEDVSDPPFRAVCKANGADLMYTEFISSEGLIRDAAKSVQKLDIFEYERPIGIQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G++ + +C + + + D +D+N GCP++ + +G+G+ LLQ
Sbjct: 74 FGSDVETMGECAR-IASRANPDLIDINYGCPVKNVACRGAGAALLQ 118
>gi|326387744|ref|ZP_08209350.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207790|gb|EGD58601.1| dihydrouridine synthase TIM-barrel protein nifR3 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 342
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 130/333 (39%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+T V +LPFRR+ +++G+ + +EM + ++ + Q +E+ +QL
Sbjct: 24 VVLAPMTGVSDLPFRRMVRRFGSGLNVTEMIASPAAIRETRQSIQKAAWDPAEEPVSMQL 83
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G P + + +L E++ A +D+N+GCP+ + +GS L++
Sbjct: 84 VGCEPEQMGEAAKLSEDRGAA-IIDINMGCPVRKVVNGDAGSALMR-------------- 128
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
D+ L A ++++ + + S+P
Sbjct: 129 -------------------DIPLA------------------ARLIEATVKAV----SVP 147
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVK R G D+ +D GA +IT+HGRTR Q Y ADW ++ K S
Sbjct: 148 VTVKMRMGWCHDSLNAPELARIAQDLGAKMITVHGRTRNQMYKGSADWGFVRKVKDAVS- 206
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ NGDI S
Sbjct: 207 -------------------------------------------------IPVIVNGDICS 217
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
D +L++S GVMIGRGA +PW+ +I
Sbjct: 218 IADVATALEQS-GADGVMIGRGAYGRPWLLGQI 249
>gi|164686644|ref|ZP_02210672.1| hypothetical protein CLOBAR_00237 [Clostridium bartlettii DSM
16795]
gi|164604373|gb|EDQ97838.1| TIM-barrel protein, nifR3 family [Clostridium bartlettii DSM 16795]
Length = 322
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 134/340 (39%), Gaps = 109/340 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ +++LSP+ V +LPFR +CK+ G + +EM A
Sbjct: 6 VSLDNRVFLSPMAGVTDLPFRLICKQKGCGMLYTEMINAK-------------------- 45
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
LC N+ K T++ +E+ + +Q
Sbjct: 46 ----ALCYNDENT-KKMTKIEDEEHPI------------------------------AIQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G+ P + + ++L + +D+N+GCP + K G GS L++ + + V+ +
Sbjct: 71 IFGSEPEYMGRAAEILNSH-SNEILDINMGCPAPKVIKNGDGSALMKNPKLAEQVMRAVV 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRD-WGASLITLHGRTREQRYTKQADWDYIEK 493
E S+ P+T+K R G DN++ + K + G S + +HGRTREQ Y+ +ADWD I++
Sbjct: 130 EHSTKPVTLKIRKG-WDDNSVNAVEIAKIAEQAGISALAIHGRTREQYYSGKADWDIIKE 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
S P+
Sbjct: 189 IKDSIS--------------------------------------------------IPVI 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ ED L+K+ + +MIGRGA PWIF I
Sbjct: 199 GNGDVFEIEDAINMLEKT-NCDAIMIGRGAQGNPWIFNRI 237
>gi|455652426|gb|EMF31056.1| dihydrouridine synthase [Streptomyces gancidicus BKS 13-15]
Length = 377
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 136/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 13 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 58
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 59 --------------KTMQL-----------------IRFDASEQPRS----------IQL 77
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ +
Sbjct: 78 YGVDPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVA 137
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 138 GAGDLPVTMKMRKGIDDDHLTYLDAGRIAVEEGVTAIALHGRTASQHYGGTADWDAIAR- 196
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 197 ----------LKEHVPEI--------------------------------------PVLG 208
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 209 NGDIWSADDALRMVRET-GCDGVVVGRGCLGRPWLFADL 246
>gi|406833095|ref|ZP_11092689.1| hypothetical protein SpalD1_15691 [Schlesneria paludicola DSM
18645]
Length = 374
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 129/337 (38%), Gaps = 107/337 (31%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ LSPL NLPFRR+ ++ G + +++ A L+ S
Sbjct: 38 RYLLSPLAGYTNLPFRRIVREVGGVGLATTDLVNARGLMDGS------------------ 79
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL+E CP + F VQL G+
Sbjct: 80 ----------AKSLQLIET------------CPED---------------RPFAVQLFGS 102
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
NP ++ Q LE + + D +D+N+GCP+ I K G+G+ ++ + + ++ + E
Sbjct: 103 NPAIMRDAAQFLEARGI-DSIDINMGCPVHRITKGGAGASMMCQVDSTVELVRLIVESVK 161
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+TVK R G + F +F G + + +HGRTREQ ++ D D I +
Sbjct: 162 IPVTVKMRLGWDQTQLTAPKFAREFEQVGVAAVAIHGRTREQGFSGVVDRDGIRQVV--- 218
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
+ +EK P+ GNGDI
Sbjct: 219 ---------------------------------------EAVEKI-------PVIGNGDI 232
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ D ++ G+ +GRGAL PWIF++ E
Sbjct: 233 RTVADGVRMFAET-GCHGISMGRGALANPWIFRQFVE 268
>gi|422341001|ref|ZP_16421942.1| NifR3 family TIM-barrel protein [Treponema denticola F0402]
gi|325474572|gb|EGC77758.1| NifR3 family TIM-barrel protein [Treponema denticola F0402]
Length = 334
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICIDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KSHQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|408532027|emb|CCK30201.1| putative tRNA-dihydrouridine synthase [Streptomyces davawensis JCM
4913]
Length = 388
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/347 (23%), Positives = 131/347 (37%), Gaps = 115/347 (33%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW-----------GADITCSEMAVATELLKSSPQEWAL 306
Q + L+P+ + N PFR LC+ + G + SEM L++ + + L
Sbjct: 16 QPPVVLAPMAGITNAPFRTLCRSFAGGESKDGASGGKGLFVSEMITTRALVERNEKTMQL 75
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
I ESE +QL G +P + K +++ E+ D +D+N GCP+ + ++G GS L
Sbjct: 76 IHFDESEKPRSIQLYGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPY 135
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+ NL RA IL
Sbjct: 136 KRNLL--------------------------------------------------RA-IL 144
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
+ ++ E LP+T+K R GI D+ + + G + I LHGRT Q Y A
Sbjct: 145 REAVSGAGE---LPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTA 201
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DWD I + + +P+
Sbjct: 202 DWDAIAR-----------LKEHVPEI---------------------------------- 216
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDI S D ++++ GV++GRG L +PW+F ++
Sbjct: 217 ----PVLGNGDIWSAADAVRMVRET-GCDGVVVGRGCLGRPWLFADL 258
>gi|326803024|ref|YP_004320842.1| nifR3 family TIM-barrel protein [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650489|gb|AEA00672.1| TIM-barrel protein, nifR3 family [Aerococcus urinae
ACS-120-V-Col10a]
Length = 349
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 51/223 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQ+ G L + Q +E +D+N+GCP+ + K +GS L N + + +
Sbjct: 68 LSVQIFGGQADSLAEAAQFIEANTKAAIIDINMGCPVNKVVKTDAGSKALLDPNEVYNRV 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + S+P+TVK RTG D+ + ++ GA +I +HGRTREQ YT +A+W+
Sbjct: 128 KMVADAVSIPVTVKMRTGWDDDHILAVENALAAQEAGAKMIAMHGRTREQMYTGKANWNI 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I++ +Q S
Sbjct: 188 IKQVSQKLS--------------------------------------------------V 197
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P YGNGDI + E+ +L + GVM+GRG L PW+ +
Sbjct: 198 PFYGNGDIRTPEEAKYALDNY-GVDGVMVGRGCLGNPWVIHRM 239
>gi|227495137|ref|ZP_03925453.1| dihydrouridine synthase [Actinomyces coleocanis DSM 15436]
gi|226831589|gb|EEH63972.1| dihydrouridine synthase [Actinomyces coleocanis DSM 15436]
Length = 410
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/356 (21%), Positives = 133/356 (37%), Gaps = 125/356 (35%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWG----------------------ADITCSEMAVATELLK 298
+ L+P+ V ++PFRRL +++G A + EM A L++
Sbjct: 23 VVLAPMAGVTDVPFRRLSREFGEAGLPESQQEKLNQATPGIDAPAGLYVCEMITARALVE 82
Query: 299 SSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ 358
+ + + K + + +QL G +P L K T +L E+ VD +D+N GCP+ + K+
Sbjct: 83 KNEKTMHMAKPDPQDRVRSLQLYGTDPVNLYKATHILLEEDFVDHIDLNFGCPVPKVTKK 142
Query: 359 GSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSG 418
G G+ L + +LF
Sbjct: 143 GGGAALPWKLDLFD---------------------------------------------- 156
Query: 419 LLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
+I+ SV+ + E +P+T+K R GI ++ + D G + + LHGRT
Sbjct: 157 -----DIVNSVVRAVTETGKDVPVTIKMRVGIDDAHHTFRDAGRIAEDAGIAAVALHGRT 211
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
+ Q Y+ ADWD I + Q +
Sbjct: 212 QAQYYSGHADWDTIAQLKQDLT-------------------------------------- 233
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGDI S +D + + + V++GRGA +PW+F ++
Sbjct: 234 ------------VPVLGNGDIFSAQDAKDVMAHT-GCDAVVVGRGAQGRPWLFHDL 276
>gi|418467403|ref|ZP_13038287.1| hypothetical protein SMCF_1191 [Streptomyces coelicoflavus ZG0656]
gi|371551986|gb|EHN79250.1| hypothetical protein SMCF_1191 [Streptomyces coelicoflavus ZG0656]
Length = 388
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 135/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 69
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 70 -----------KTMQL-----------------IHFDATETPRS----------IQLYGV 91
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ +
Sbjct: 92 DPVTVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAIVREAVTGAG 151
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R G+ D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 152 DLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHYGGTADWDAIAR---- 207
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 208 -------LKEHVPEI--------------------------------------PVLGNGD 222
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 223 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 257
>gi|374815408|ref|ZP_09719145.1| tRNA-dihydrouridine synthase [Treponema primitia ZAS-1]
Length = 325
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/337 (24%), Positives = 131/337 (38%), Gaps = 104/337 (30%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G L+L+P+ + FR +C GAD TC+EM + L ++ + L+ R E+E + V
Sbjct: 16 GNLFLAPVAGYSDRAFRSVCIDQGADFTCTEMVSSEALTRNHVRTEILLPRAENEARYAV 75
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
QL G +P V+ + LL + VD+N GCP+ + K G+GS L++ + G
Sbjct: 76 QLFGADPDVMYRAALLLAPWRP-ESVDINCGCPVPKVVKTGAGSALMRSPDRLG------ 128
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VS 437
I+++V+ E +
Sbjct: 129 ---------------------------------------------RIVEAVVRASKEALG 143
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R+G + + GA+L+ LH RTR Q YT ++DW I + L
Sbjct: 144 GVPVTVKLRSGWDAASLNYGECGRIAAESGAALVGLHPRTRTQGYTGKSDWSLI---SDL 200
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
SR P P+ G+GD
Sbjct: 201 ASR-----------------------------------------------LPVPVAGSGD 213
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ S ED L+++ + VM RGA+ P+IF K
Sbjct: 214 LFSPEDAERMLRET-RCAAVMFARGAMGNPFIFSATK 249
>gi|313204550|ref|YP_004043207.1| tRNA-u20-dihydrouridine synthase [Paludibacter propionicigenes WB4]
gi|312443866|gb|ADQ80222.1| tRNA-U20-dihydrouridine synthase [Paludibacter propionicigenes WB4]
Length = 341
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 135/335 (40%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V + FR LCK++G D+ +E A L++S + + ++ E +QL
Sbjct: 13 LFLAPMEDVTDPAFRLLCKRFGVDMVYTEFISADALIRSVKRTEQKLTIYDEERPVAIQL 72
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + ++ E +F+D+N GCP++ + +G+G+GLL+
Sbjct: 73 YGREADAMAEAARIAAEACP-EFIDLNFGCPVKKVAGKGAGAGLLRD------------- 118
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K Q+ E V+ +N LP
Sbjct: 119 --IPKMLQITSE------------------------------------VVKAVN----LP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +D+ +I + +D G + + +HGRTR Q Y ADW I + +
Sbjct: 137 VTVKTRLGWDEDSKVIVELAERLQDCGIAALAIHGRTRSQMYKGDADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P+ GNGD+ +
Sbjct: 192 NNPRMH-------------------------------------------IPIIGNGDVTT 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E E + + VM+GR A+ +PW+F E+K+
Sbjct: 209 AERAAECFDRY-GVDAVMVGRAAIGRPWVFAEMKQ 242
>gi|134103510|ref|YP_001109171.1| dihydrouridine synthase TIM-barrel protein nifR3 [Saccharopolyspora
erythraea NRRL 2338]
gi|291005944|ref|ZP_06563917.1| dihydrouridine synthase TIM-barrel protein nifR3 [Saccharopolyspora
erythraea NRRL 2338]
gi|133916133|emb|CAM06246.1| dihydrouridine synthase TIM-barrel protein nifR3 [Saccharopolyspora
erythraea NRRL 2338]
Length = 387
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 108/337 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N+ FR LC+++GA + EM + AL++RH + +Q+
Sbjct: 29 VVLAPMAGITNVAFRWLCREYGAGLYVCEMITSR----------ALVERHPTT----MQM 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+P + +QL G +P
Sbjct: 75 VTFDPDEHPRS-----------------------------------------MQLYGVDP 93
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC---MNEVS 437
+ + +++ E+ + D VD+N GCP+ + ++G GS L + + ++ E +
Sbjct: 94 ETMGQAVRMIVEEGLADHVDMNFGCPVPKVTRKGGGSALPYKRRLFGEIVRAAVRAAEPA 153
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R GI ++ + D GA+ + LHGRT QRY+ QADW I + +
Sbjct: 154 GVPVTVKFRIGIDDEHITYLDAGRIAEDNGAAAVALHGRTAAQRYSGQADWSAIARLKET 213
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
RT P+ GNGD
Sbjct: 214 V--------------------------RT-----------------------IPVLGNGD 224
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
I S +D + ++ GV++GRG L +PW+F++++
Sbjct: 225 IFSADDALRMVAET-GCDGVVVGRGCLGRPWLFRDLQ 260
>gi|340793545|ref|YP_004759008.1| hypothetical protein CVAR_0585 [Corynebacterium variabile DSM
44702]
gi|340533455|gb|AEK35935.1| hypothetical protein CVAR_0585 [Corynebacterium variabile DSM
44702]
Length = 402
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 128/341 (37%), Gaps = 100/341 (29%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCS-------EMAVATELLKSSPQEWALIKRHESE 313
+ L+P+ V N+ FR LC++ T S EM A L++ +P+ + E
Sbjct: 25 VVLAPMAGVTNVAFRTLCREQEEQRTGSASGLYVCEMITARALVERNPKTLHMTTFGPDE 84
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+QL +P K ++L E+ D +D+N GCP+ + ++G GS L + LF
Sbjct: 85 SPRSLQLYTTDPEYTYKAARMLAEEDRADHIDMNFGCPVPKVTRRGGGSALPYKRKLFAA 144
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+G + + G SG
Sbjct: 145 V----------------------------VGAAVRGVADAGRASG--------------- 161
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
++P+TVK R GI +++ + D GA+ +TLHGRT QRY+ ADW I
Sbjct: 162 --PDAIPVTVKFRVGIDDEHHTHLDAGRIAADQGAAAVTLHGRTAAQRYSGTADWGEI-- 217
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
R + D I P+
Sbjct: 218 -----------------------------------ARLVEHMDGTGI----------PVL 232
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
GNGDI D ++++ GV++GRG L +PW+F E+
Sbjct: 233 GNGDIFKATDAAAMMEQT-GCDGVVVGRGCLGRPWLFAELS 272
>gi|302342599|ref|YP_003807128.1| dihydrouridine synthase DuS [Desulfarculus baarsii DSM 2075]
gi|301639212|gb|ADK84534.1| dihydrouridine synthase DuS [Desulfarculus baarsii DSM 2075]
Length = 326
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 128/336 (38%), Gaps = 109/336 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+ Q + +P+ V + FR + K+ GA + +EM A L++ H+
Sbjct: 6 LSLQSPFFAAPMAGVSSPAFRLMAKRGGAGLVYTEMISAV----------GLVRGHKK-- 53
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L C L EE+ P+ +Q
Sbjct: 54 ------------TLELCLTLPEER------------PV-------------------ALQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G +P ++ + L +M VD +D+N+GCP + +QG+GS LL+ +V+ +
Sbjct: 71 LFGADPEIMGRAAAL-ASRMPVDLIDINMGCPARKVRRQGAGSALLEDIPRAAAVMAAVA 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +SLP TVK R G D+ + +P GA + LH RT Q + QADW I +
Sbjct: 130 QAASLPATVKLRLGPSDDD--LERIVPPLLAAGAKAVCLHARTTRQAFAGQADWAAIARL 187
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ C P P+ G
Sbjct: 188 SAWC--------------------------------------------------PVPVIG 197
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
NGD+ +D L+++ + VMIGRGA+ PWIF
Sbjct: 198 NGDVRGEQDALGMLRQT-NCQAVMIGRGAMGDPWIF 232
>gi|213019483|ref|ZP_03335289.1| NifR3 family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|212994905|gb|EEB55547.1| NifR3 family protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 298
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 125/327 (38%), Gaps = 110/327 (33%)
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
++ V + PFR + KK GA + SEM + ++ + Q +++ + ++L VQL G P
Sbjct: 1 MSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQS---MQKAKVDELTAVQLAGCEP 57
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
V+ + +L E M +D+N GCP++ + +GS L++ K
Sbjct: 58 DVMAEAAKL-NEGMGAKIIDINFGCPVKKVVNGYAGSALMRDEK---------------K 101
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445
+++E VV V V P+TVK
Sbjct: 102 AAEIIEA--VVKAVSV--------------------------------------PVTVKM 121
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
RTG + +N D GA +IT+HGRTR Q Y QADW ++
Sbjct: 122 RTGWNDENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFVRNV----------- 170
Query: 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565
+EQ P+ NGDI S D
Sbjct: 171 ---------------------KEQ------------------VKIPVIVNGDIKSLNDVQ 191
Query: 566 ESLKKSPSISGVMIGRGALIKPWIFQE 592
+LK+S + GVMIGRG KPW+ +
Sbjct: 192 SALKESGA-DGVMIGRGTYGKPWLINQ 217
>gi|383647727|ref|ZP_09958133.1| dihydrouridine synthase [Streptomyces chartreusis NRRL 12338]
Length = 376
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 13 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 58
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 59 --------------KTMQL-----------------IHFDASERPRS----------IQL 77
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++ ++
Sbjct: 78 YGVDPATVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAILREAVS 137
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 138 GAGELPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR- 196
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 197 ----------LKEHVPEI--------------------------------------PVLG 208
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 209 NGDIWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 246
>gi|374291851|ref|YP_005038886.1| tRNA-dihydrouridine synthase B [Azospirillum lipoferum 4B]
gi|357423790|emb|CBS86650.1| tRNA-dihydrouridine synthase B [Azospirillum lipoferum 4B]
Length = 328
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 131/339 (38%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I G + L+P++ V +LPFRRL K+ G + SEM + +++ + Q ++ E+E
Sbjct: 8 ITLAGPVILAPMSGVSDLPFRRLVKRAGCGLVVSEMIASQAMIRENRQTLRMV---ETE- 63
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
P EF VQ
Sbjct: 64 ------------------------------------PEEF---------------PMAVQ 72
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G P V+ + +L +++ VD+N GCP++ + +GS L++ + ++ +
Sbjct: 73 LAGCEPEVMAEAAKLNQDRGAA-VVDINFGCPVKKVVNGHAGSSLMRDEALAGRILEAVV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R G + N N G ++T+HGRTR Q YT ADW Y+
Sbjct: 132 KAVGIPVTLKMRLGWDETNRNAPNLARIAEQCGIRMVTVHGRTRMQFYTGTADWTYV--- 188
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R+ K A P+
Sbjct: 189 -----------------------------------RHVKDA------------VSIPVVV 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S+E ++L +S GVMIGRG+ +PW ++
Sbjct: 202 NGDITSFEAVDQALTES-GADGVMIGRGSYGRPWFPSQV 239
>gi|313682259|ref|YP_004059997.1| tim-barrel protein, nifr3 family [Sulfuricurvum kujiense DSM 16994]
gi|313155119|gb|ADR33797.1| TIM-barrel protein, nifR3 family [Sulfuricurvum kujiense DSM 16994]
Length = 329
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 134/342 (39%), Gaps = 108/342 (31%)
Query: 254 KIDWQGKLY-LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K+D+ +Y L+PL +LPFR + KK+GAD+T SEM + L S + +++R +
Sbjct: 4 KLDFSSPVYALAPLAGYTDLPFRNVVKKFGADLTVSEMLSSNALAYGSQKTIKMLERSPN 63
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
ED + VQ+ G ++ + ++L +D +D+N GCP+ I GSGS LL
Sbjct: 64 EDPYSVQIAGAEEDIVRRAVEVLNTVDDIDIIDLNCGCPVPKIVCHGSGSALL------- 116
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+ L + A I++++
Sbjct: 117 --------------------------------------------NDLPRMARIIETIKKT 132
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
N+ + ++VK R G N+I GA + +HGRTR ++ D+D I
Sbjct: 133 SNKST---LSVKIRLGFETKNHI--EIAKLVESCGADFLAVHGRTRAGKFKAPVDYDAIG 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
E A + P +
Sbjct: 188 ------------------------------------------------EIKASIGIP--V 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGDI S+E L+ + + GVMIGRGA+ PWIF ++K
Sbjct: 198 IANGDIDSFEKAQWVLEHTKA-DGVMIGRGAVGAPWIFHQLK 238
>gi|440698653|ref|ZP_20880986.1| TIM-barrel protein, nifR3 family [Streptomyces turgidiscabies Car8]
gi|440278907|gb|ELP66874.1| TIM-barrel protein, nifR3 family [Streptomyces turgidiscabies Car8]
Length = 398
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 138/341 (40%), Gaps = 108/341 (31%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESE 313
D Q + L+P+ + N PFR LC+++ G + SEM AL++R++
Sbjct: 32 DVQPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERND-- 79
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
K QL I F + S +
Sbjct: 80 ----------------KTMQL-----------------IRFDATEKPRS----------I 96
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-C 432
QL G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++
Sbjct: 97 QLYGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAILREA 156
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
++ LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I
Sbjct: 157 VSGAGDLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIA 216
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + +P+ P+
Sbjct: 217 R-----------LKEHVPEI--------------------------------------PV 227
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI S ED ++++ GV++GRG L +PW+F ++
Sbjct: 228 LGNGDIWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 267
>gi|315504262|ref|YP_004083149.1| tim-barrel protein, nifr3 family [Micromonospora sp. L5]
gi|315410881|gb|ADU08998.1| TIM-barrel protein, nifR3 family [Micromonospora sp. L5]
Length = 387
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 132/337 (39%), Gaps = 109/337 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N+ FRRLC++ G I EM + T AL++R
Sbjct: 20 VVLAPMAGITNVGFRRLCREQGGGIYVCEM-ITTR---------ALVER----------- 58
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
NP L EE+ R+ +QL G +P
Sbjct: 59 ---NPKTLRMIAFGAEEK---------------------------PRS----LQLYGTDP 84
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-- 438
+ +++ E+ + D +D+N GCP+ + ++G GS L R + ++ + +S
Sbjct: 85 EITAAAVRIVVERDLADHIDLNFGCPVPKVTRRGGGSALPWRRRLFARLVRAAVDAASPA 144
Query: 439 -LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+TVK R GI D+ +D G + + LHGRT QRY+ ADWD I
Sbjct: 145 GVPVTVKMRKGIDDDHLTYVEAGLAAQDAGVAAVALHGRTAAQRYSGTADWDAIA----- 199
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
T +A D P+ GNGD
Sbjct: 200 ----------------------------------TLKAALDV-----------PVLGNGD 214
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
I +D + + + GV+IGRG L +PW+F +++
Sbjct: 215 IWEADDALRMVAHT-GVDGVVIGRGCLGRPWLFADLE 250
>gi|429758346|ref|ZP_19290863.1| TIM-barrel protein, nifR3 family [Actinomyces sp. oral taxon 181
str. F0379]
gi|429173503|gb|EKY15022.1| TIM-barrel protein, nifR3 family [Actinomyces sp. oral taxon 181
str. F0379]
Length = 412
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/341 (23%), Positives = 136/341 (39%), Gaps = 72/341 (21%)
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
+ V + PFRRLC+ +G E L +P AL ES G
Sbjct: 1 MAGVTDAPFRRLCRMFG-----EEALGGPSPLTGTPSPAALPGVAESTRPGTASESGKES 55
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN----LFGVQLCGNNPY 381
+ T ++ + +++ + + + + + R + + VQL G NP
Sbjct: 56 GAGEELTPHVDAPAGLYVMEM---VTSRALVEGNARTMAMIRPDPAERVHSVQLYGVNPQ 112
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL---------LQRANILQSVITC 432
V+ + TQ++ E D +D+N GCP+ + ++G G+ L L RA + Q+ ++
Sbjct: 113 VMARATQIMIEGEYADHIDLNFGCPVPKVTRKGGGAALPWKRDLYTDLLRAVVTQARVSG 172
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+P+TVK R GI ++ ++ GA+ +T+H RT+ Q Y QA WDYI
Sbjct: 173 DARGCEIPVTVKIRMGIDSEHETGLEAAQIAQELGAAAVTVHARTQTQHYAGQAHWDYIA 232
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + +P F
Sbjct: 233 RVKEALD---------IPVF---------------------------------------- 243
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ D + ++ +G+ +GRGA +PWIF++I
Sbjct: 244 -GNGDVFEAADAIAMMDQT-GCNGISVGRGAQGRPWIFRDI 282
>gi|282891207|ref|ZP_06299710.1| hypothetical protein pah_c048o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281498900|gb|EFB41216.1| hypothetical protein pah_c048o037 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 342
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 51/223 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + K +++E+ + D VD+N GCP++ + K GSGSGLL+ ++ ++
Sbjct: 73 IGGQLCGSKPQLAAKAAKIIED-LGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGEIL 131
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ M +P+TVK R G WD
Sbjct: 132 SEMVAAVKIPVTVKIRAG---------------------------------------WDD 152
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
CA+ ++ GA IT+HGRTR+Q Y A+WD+I+ Q+
Sbjct: 153 ENLCAEEITQ----------IAEKAGAKAITIHGRTRQQAYRGPANWDHIKASKQVAKHI 202
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGD++ + + V++ RG + +PWI Q+I
Sbjct: 203 KVIGNGDVMDPTSAKRMFEYT-GCDAVLVARGTMGQPWIAQDI 244
>gi|373455729|ref|ZP_09547556.1| nifR3 family putative TIM-barrel protein [Dialister succinatiphilus
YIT 11850]
gi|371934571|gb|EHO62353.1| nifR3 family putative TIM-barrel protein [Dialister succinatiphilus
YIT 11850]
Length = 325
Score = 99.4 bits (246), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/340 (22%), Positives = 128/340 (37%), Gaps = 107/340 (31%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+I+ G L+P+ V +L +R + ++ GA +T +EM A L K ++
Sbjct: 9 QIELDGWAVLAPMAGVSDLAYRVIARRMGAAMTTAEMVSAKGLY---------YKNEKTR 59
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
D+ + G +P L
Sbjct: 60 DMLKID-PGEHPVAL--------------------------------------------- 73
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
QL G+ P ++ + +E + D +D+N+GCP++ + K G GS L++ + V+ M
Sbjct: 74 QLFGSEPDIMALGAKEME-KAGADIIDINMGCPMQKVVKNGDGSALMKNIPLAAEVVKAM 132
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E +P+TVK R G ++ + GA IT+HGRTRE YT ADW+ I
Sbjct: 133 AEAVHIPVTVKMRLGWSRETENCVELAEAVEEAGAMAITVHGRTREDFYTGHADWEKI-- 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
G + +H P++
Sbjct: 191 ----------------------GEVVRAVH--------------------------IPVF 202
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD++ + L K +GV IGR A PW+F+ +
Sbjct: 203 GNGDVVDGPS-ADRLMKETGCAGVAIGRAAWGNPWVFKAV 241
>gi|338174134|ref|YP_004650944.1| tRNA-dihydrouridine synthase [Parachlamydia acanthamoebae UV-7]
gi|336478492|emb|CCB85090.1| putative tRNA-dihydrouridine synthase [Parachlamydia acanthamoebae
UV-7]
Length = 342
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 51/223 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
G QLCG+ P + K +++E+ + D VD+N GCP++ + K GSGSGLL+ ++ ++
Sbjct: 73 IGGQLCGSKPQLAAKAAKIIED-LGFDVVDLNCGCPVDKVTKDGSGSGLLKNPLLIGEIL 131
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ M +P+TVK R G WD
Sbjct: 132 SEMVAAVKIPVTVKIRAG---------------------------------------WDD 152
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
CA+ ++ GA IT+HGRTR+Q Y A+WD+I+ Q+
Sbjct: 153 ENLCAEEITQ----------IAEKAGAKAITIHGRTRQQAYRGPANWDHIKASKQVAKHI 202
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ GNGD++ + + V++ RG + +PWI Q+I
Sbjct: 203 KVIGNGDVMDPTSAKRMFEYT-GCDAVLVARGTMGQPWIAQDI 244
>gi|253576834|ref|ZP_04854159.1| tRNA-dihydrouridine synthase [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251843701|gb|EES71724.1| tRNA-dihydrouridine synthase [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 333
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 134/336 (39%), Gaps = 106/336 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + ++ L+P+ V N FR + K++G + C+EM +L
Sbjct: 7 VELKNQVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILH---------------- 50
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
GN + ++L FVD +R +Q
Sbjct: 51 -------GNK-----RTREML-------FVD--------------------EREKPLSLQ 71
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G + L + ++++++ D +D+N+GCP+ + K +G+ L N + ++ +
Sbjct: 72 IFGGDRASLVEAAKVVDQETNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVAAVV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ S P+TVK R G W A I Y+
Sbjct: 132 DAVSKPVTVKMRIG-----------------WDAEHI------------------YVVDN 156
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A+ R G +++HGRTREQ YT +ADW YI + + S P+ G
Sbjct: 157 AKAVERA--------------GGKAVSVHGRTREQLYTGKADWSYIRQVKEAVS-IPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
NGD+ + ED L ++ GVMIGRGAL PW+
Sbjct: 202 NGDVATPEDAKRMLDET-GCDGVMIGRGALGNPWML 236
>gi|449124748|ref|ZP_21761067.1| nifR3 family putative TIM-barrel protein [Treponema denticola OTK]
gi|448943079|gb|EMB23973.1| nifR3 family putative TIM-barrel protein [Treponema denticola OTK]
Length = 334
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICVDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|376316430|emb|CCF99822.1| tRNA-dihydrouridine synthase [uncultured Flavobacteriia bacterium]
Length = 331
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 50/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G N + + +++E D +D+N GCP++ + +G+G+G+L+ +++ S+
Sbjct: 70 GIQIFGANLESMLQSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTE 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M + ++LPITVKTR G ++ I + +D G I++HGRTR Q Y +ADW I
Sbjct: 129 AMVKHTNLPITVKTRLGWDHESIKILEVAERLQDVGCKAISIHGRTRAQMYKGEADWRPI 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++N+ +H P
Sbjct: 189 AAV-----KNNSRMH-------------------------------------------IP 200
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++GNGD+ + E ++ + G MIGR ++ PW F+E+K
Sbjct: 201 VFGNGDVDTPEK-AALMRDEYGLDGAMIGRASIGYPWFFKEVK 242
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVFTEFISSEGLIRDAAKSVMKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
G N + + +++E D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGANLESMLQSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDL 122
>gi|424843641|ref|ZP_18268266.1| putative TIM-barrel protein, nifR3 family [Saprospira grandis DSM
2844]
gi|395321839|gb|EJF54760.1| putative TIM-barrel protein, nifR3 family [Saprospira grandis DSM
2844]
Length = 330
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
GVQ+ G + + +++EE + +D+N GCP++ + + +G+G+LQ + + +
Sbjct: 69 IGVQIFGAELDSMMRAAEIVEEAQP-EVLDINFGCPVKKVVCKMAGAGILQDIDRMVELT 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + + LP+TVKTR G +++ I + +D G +++HGRTR Q Y +ADW +
Sbjct: 128 EAVVKSTKLPVTVKTRLGWDQNSIKIEEVAERLQDVGIKALSIHGRTRAQMYKGEADWSH 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I + ++N IH
Sbjct: 188 IAQV-----KENPRIH-------------------------------------------I 199
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + K+ + G+MIGR A+ PWIF+EIK
Sbjct: 200 PIFGNGDIDSPEK-AKLYKERYGVDGIMIGRAAIGYPWIFREIK 242
Score = 59.7 bits (143), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ V + PFR LCK+ G D+ +E L++ + + + + E GVQ+ G
Sbjct: 16 LAPMEDVSDPPFRALCKEQGCDMMYTEFISVEGLIRDAKKSVVKLDIYPEERPIGVQIFG 75
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+ + +++EE + +D+N GCP++ + + +G+G+LQ
Sbjct: 76 AELDSMMRAAEIVEEAQP-EVLDINFGCPVKKVVCKMAGAGILQ 118
>gi|355670428|ref|ZP_09057283.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
gi|354816500|gb|EHF01088.1| hypothetical protein HMPREF9469_00320 [Clostridium citroniae
WAL-17108]
Length = 331
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 129/333 (38%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V +LPFR LC++ GA +EM A +L ++ L++ H E VQL
Sbjct: 14 VILAPMAGVTDLPFRLLCREQGAGCVVTEMVSAKAILYNNRNTKELLQIHPQERPAAVQL 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G++P ++ + +E+ DF+DVN+GCP+ I G GS L++ G
Sbjct: 74 FGSDPEIMGEIAARIEDG-PYDFIDVNMGCPVPKIVNNGEGSALMKDPKKAG-------- 124
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+LT + +++ P+ +++G +C+N V
Sbjct: 125 EILTAMVRAVKK-------------PVTVKFRKGFND-------------SCVNGVE--- 155
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
F G + + +HGRTREQ Y+ +ADWD I + +
Sbjct: 156 ------------------FARMAESCGVAAVAVHGRTREQYYSGRADWDIIRRVKEAVK- 196
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI +
Sbjct: 197 -------------------------------------------------IPVIGNGDIFT 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+D ++++ G+M+ RGA PWIF+ I
Sbjct: 208 PQDAKRMMEET-GCDGLMVARGAKGNPWIFRRI 239
>gi|153813030|ref|ZP_01965698.1| hypothetical protein RUMOBE_03438 [Ruminococcus obeum ATCC 29174]
gi|149830832|gb|EDM85922.1| TIM-barrel protein, nifR3 family [Ruminococcus obeum ATCC 29174]
Length = 327
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 130/339 (38%), Gaps = 107/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LCK+ GA + C TE++ +
Sbjct: 14 VEIENPFILAPMAGVTDLPFRILCKEQGAGLLC------TEMVSAK-------------- 53
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ N L M +D P+E + +Q
Sbjct: 54 --AISFHNKNTISL----------MQID--------PVE---------------HPVSMQ 78
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G+ P ++ + + +EEQ D +D+N+GCP+ + G GS LL+ +++ ++T ++
Sbjct: 79 IFGSEPDLMAEVAKSIEEQ-PFDILDINMGCPVPKVVNNGEGSALLKNPELIREIVTKVS 137
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
P+T K R G D GA+ + +HGRTR+Q Y +ADWD I +
Sbjct: 138 RAVKKPVTAKIRIGFEGYPVDPVEIAKIIEDSGAAAVAVHGRTRQQYYAGEADWDTIRRI 197
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+ G
Sbjct: 198 KEAVS--------------------------------------------------IPVIG 207
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGD+ S + E+L + G+MIGR PWIF+E+
Sbjct: 208 NGDVDSPKK-AEALVRETGCDGIMIGRAVRGNPWIFREM 245
>gi|375012679|ref|YP_004989667.1| putative TIM-barrel protein, nifR3 family [Owenweeksia
hongkongensis DSM 17368]
gi|359348603|gb|AEV33022.1| putative TIM-barrel protein, nifR3 family [Owenweeksia
hongkongensis DSM 17368]
Length = 331
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 115/251 (45%), Gaps = 59/251 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + +Q+ ++F G+Q+ GN + + + EE D +D+N
Sbjct: 42 EFISSEGLIRDAAKSVQKLDIFEYERPVGIQIFGNEISSMREAAAITEEANP-DIIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+G+LQ + S+ + + + + P+TVKTR G ++ I +
Sbjct: 101 GCPVKNVACKGAGAGILQDIPKMVSMTSEIVKAVNKPVTVKTRLGWDENTKYIVEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G I++HGRTR+Q Y +ADW I ++N +H
Sbjct: 161 QDVGIKAISIHGRTRKQMYKGEADWSLISAV-----KNNPRMH----------------- 198
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
P++GNGD+ S E ++ + + G+MIGR +
Sbjct: 199 --------------------------IPVFGNGDVDSPEKALH-MRNTYDVDGIMIGRAS 231
Query: 584 LIKPWIFQEIK 594
+ PW+F EIK
Sbjct: 232 IGYPWVFNEIK 242
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKQHGADVMYTEFISSEGLIRDAAKSVQKLDIFEYERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
GN + + + EE D +D+N GCP++ + +G+G+G+LQ
Sbjct: 74 FGNEISSMREAAAITEEANP-DIIDINYGCPVKNVACKGAGAGILQ 118
>gi|311063903|ref|YP_003970628.1| tRNA-dihydrouridine synthase [Bifidobacterium bifidum PRL2010]
gi|310866222|gb|ADP35591.1| tRNA-dihydrouridine synthase [Bifidobacterium bifidum PRL2010]
Length = 413
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 104/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ LSP+ V N PFR LC+++G D + +EM A L+ +P+ L + SE + +Q
Sbjct: 48 VVLSPMAGVTNWPFRVLCEEYGPDGLYVAEMITARALVARNPKALRLCRFAPSERIRSLQ 107
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G NP ++ + +++ ++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 108 LYGVNPAIVEQAARIVVDEDMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF-------- 159
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
I+Q V+ + +++
Sbjct: 160 -------------------------------------------REIIQRVVKVCS-TANI 175
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T K R GI + ++ G + +TLH RT + Y +DW I
Sbjct: 176 PVTAKIRVGIDHSHETFMEAGHIAQEEGCAAVTLHARTTAEYYGGHSDWSRIG------- 228
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
E L P ++GNGDI
Sbjct: 229 -----------------------------------------ELVGALDIP--VFGNGDIW 245
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D E ++++ +GV IGRG +PW+F +I+
Sbjct: 246 GADDALEMVRET-GCAGVAIGRGCQGRPWLFADIR 279
>gi|449105864|ref|ZP_21742557.1| nifR3 family putative TIM-barrel protein [Treponema denticola ASLM]
gi|451970153|ref|ZP_21923382.1| nifR3 family putative TIM-barrel protein [Treponema denticola
US-Trep]
gi|448966644|gb|EMB47297.1| nifR3 family putative TIM-barrel protein [Treponema denticola ASLM]
gi|451701215|gb|EMD55695.1| nifR3 family putative TIM-barrel protein [Treponema denticola
US-Trep]
Length = 334
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICVDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|42528231|ref|NP_973329.1| NifR3 family TIM-barrel protein [Treponema denticola ATCC 35405]
gi|41819501|gb|AAS13248.1| TIM-barrel protein, putative, NifR3 family [Treponema denticola
ATCC 35405]
Length = 333
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 14 SGNIFLAPVAGYSDKAFRSICVDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 60
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 61 -SLIGRAP-----------------------------------------NEKAYAVQIFG 78
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 79 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 138
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 139 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 198
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 199 VQFA-------------------------------------------KPYQI----PIFG 211
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 212 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 251
>gi|421734544|ref|ZP_16173612.1| hypothetical protein B216_06510 [Bifidobacterium bifidum LMG 13195]
gi|407077546|gb|EKE50384.1| hypothetical protein B216_06510 [Bifidobacterium bifidum LMG 13195]
Length = 426
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 104/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ LSP+ V N PFR LC+++G D + +EM A L+ +P+ L + SE + +Q
Sbjct: 61 VVLSPMAGVTNWPFRVLCEEYGPDGLYVAEMITARALVARNPKALRLCRFAPSERIRSLQ 120
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G NP ++ + +++ ++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 121 LYGVNPAIVEQAARIVVDEDMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF-------- 172
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
I+Q V+ + +++
Sbjct: 173 -------------------------------------------REIIQRVVKVCS-AANI 188
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T K R GI + ++ G + +TLH RT + Y +DW I
Sbjct: 189 PVTAKIRVGIDHSHETFMEAGHIAQEEGCAAVTLHARTTAEYYGGHSDWSRIG------- 241
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
E L P ++GNGDI
Sbjct: 242 -----------------------------------------ELVGALDIP--VFGNGDIW 258
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D E ++++ +GV IGRG +PW+F +I+
Sbjct: 259 GADDALEMVRET-GCAGVAIGRGCQGRPWLFADIR 292
>gi|449104050|ref|ZP_21740792.1| nifR3 family putative TIM-barrel protein [Treponema denticola AL-2]
gi|448963907|gb|EMB44581.1| nifR3 family putative TIM-barrel protein [Treponema denticola AL-2]
Length = 336
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICVDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|310287030|ref|YP_003938288.1| hypothetical protein BBIF_0509 [Bifidobacterium bifidum S17]
gi|421737455|ref|ZP_16176050.1| hypothetical protein B217_09135 [Bifidobacterium bifidum IPLA
20015]
gi|309250966|gb|ADO52714.1| putative TIM-barrel protein [Bifidobacterium bifidum S17]
gi|407295256|gb|EKF15043.1| hypothetical protein B217_09135 [Bifidobacterium bifidum IPLA
20015]
Length = 426
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 131/335 (39%), Gaps = 104/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ LSP+ V N PFR LC+++G D + +EM A L+ +P+ L + SE + +Q
Sbjct: 61 VVLSPMAGVTNWPFRVLCEEYGPDGLYVAEMITARALVARNPKALRLCRFAPSERIRSLQ 120
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G NP ++ + +++ ++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 121 LYGVNPAIVEQAARIVVDEDMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF-------- 172
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
I+Q V+ + +++
Sbjct: 173 -------------------------------------------REIIQRVVKVCS-AANI 188
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T K R GI + ++ G + +TLH RT + Y +DW I
Sbjct: 189 PVTAKIRVGIDHSHETFMEAGHIAQEEGCAAVTLHARTTAEYYGGHSDWSRIG------- 241
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
E L P ++GNGDI
Sbjct: 242 -----------------------------------------ELVGALDIP--VFGNGDIW 258
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D E ++++ +GV IGRG +PW+F +I+
Sbjct: 259 GADDALEMVRET-GCAGVAIGRGCQGRPWLFADIR 292
>gi|345854033|ref|ZP_08806893.1| dihydrouridine synthase [Streptomyces zinciresistens K42]
gi|345634487|gb|EGX56134.1| dihydrouridine synthase [Streptomyces zinciresistens K42]
Length = 380
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/339 (23%), Positives = 135/339 (39%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 16 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 61
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 62 --------------KTMQL-----------------IHFDATEKPRS----------IQL 80
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ ++ + D +D+N GCP+ + ++G GS L + N+L++++ +
Sbjct: 81 YGVDPATVGKAVRMIADEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVT 140
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 141 GAGDLPVTMKMRKGIDDDHLTFLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR- 199
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 200 ----------LKEHVPEI--------------------------------------PVLG 211
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S D ++++ GV++GRG L +PW+F ++
Sbjct: 212 NGDIWSAGDAVRMMRET-GCDGVVVGRGCLGRPWLFADL 249
>gi|338209927|ref|YP_004653974.1| nitrogen regulator protein NIfR3 [Runella slithyformis DSM 19594]
gi|336303740|gb|AEI46842.1| TIM-barrel protein, nifR3 family [Runella slithyformis DSM 19594]
Length = 329
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 111/251 (44%), Gaps = 59/251 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EF+ +G + +Q+ ++F G+QL G++ + +C ++ + D +D+N
Sbjct: 42 EFVSSEGLIRDAAKSVQKLDIFEYERPIGIQLFGSDIETMGECARI-ASNVHPDLIDINY 100
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+G+ LLQ + + + + + LP+TVKTR G + I +
Sbjct: 101 GCPVKQVACRGAGAALLQDIPKMVKMTEAVVKATHLPVTVKTRLGWDESTKNIQEVAERL 160
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G +T+HGRTR Q Y ADW TL
Sbjct: 161 QDIGIKALTVHGRTRVQMYKGDADW--------------------------------TLI 188
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
GR +E P++GNGDI S E E + + G+MIGR +
Sbjct: 189 GRIKENSRID----------------IPIFGNGDIDSPEKALE-YRNRFGVDGIMIGRAS 231
Query: 584 LIKPWIFQEIK 594
+ PWIF EIK
Sbjct: 232 IGYPWIFNEIK 242
Score = 68.6 bits (166), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 68/123 (55%), Gaps = 5/123 (4%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR +CK+ GAD+ +E + L++ + +
Sbjct: 1 MVKIGNIELGEF----PLLLAPMEDVSDPPFRAVCKEGGADLMYTEFVSSEGLIRDAAKS 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ E E G+QL G++ + +C + + + D +D+N GCP++ + +G+G+
Sbjct: 57 VQKLDIFEYERPIGIQLFGSDIETMGECAR-IASNVHPDLIDINYGCPVKQVACRGAGAA 115
Query: 364 LLQ 366
LLQ
Sbjct: 116 LLQ 118
>gi|251794118|ref|YP_003008849.1| hypothetical protein Pjdr2_0082 [Paenibacillus sp. JDR-2]
gi|247541744|gb|ACS98762.1| TIM-barrel protein, nifR3 family [Paenibacillus sp. JDR-2]
Length = 338
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/336 (23%), Positives = 127/336 (37%), Gaps = 106/336 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + K+ L+P+ V N FR + K++G + C+EM +L
Sbjct: 7 IEMKNKVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSDKAILH---------------- 50
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
GN + M + FVD +R +Q
Sbjct: 51 -------GN------------KRTMEMLFVD--------------------EREKPLSLQ 71
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G + L + +++++Q D +D+N+GCP+ + K +G+ L N + +++ +
Sbjct: 72 IFGGDRESLVEAAKVVDQQTNADIIDINMGCPVPKVTKCDAGARWLLDPNKIYEMVSAVT 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
S P+TVK R G ++ + G +++HGRTREQ+YT +A+WD I
Sbjct: 132 AAVSKPVTVKMRIGWDDEHIYAVDNAKAVESAGGKAVSVHGRTREQQYTGKANWDIIRDV 191
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q S P+ G
Sbjct: 192 KQAVS--------------------------------------------------IPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
NGD+ S ED L + GVMIGRGAL PW+
Sbjct: 202 NGDVFSPEDARRMLDHT-GCDGVMIGRGALGNPWML 236
>gi|449116959|ref|ZP_21753403.1| nifR3 family putative TIM-barrel protein [Treponema denticola H-22]
gi|448952223|gb|EMB33027.1| nifR3 family putative TIM-barrel protein [Treponema denticola H-22]
Length = 334
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GA+ T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICVDCGANFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYKIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 TPYKIPVTLKIRSGFTSDKLNWKEAASAAIDAGVKMLTLHPRTRTQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ KP+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGKPFIFTQTRE 254
>gi|379728207|ref|YP_005320403.1| tRNA-dihydrouridine synthase [Saprospira grandis str. Lewin]
gi|378573818|gb|AFC22819.1| tRNA-dihydrouridine synthase [Saprospira grandis str. Lewin]
Length = 330
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 106/224 (47%), Gaps = 50/224 (22%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
GVQ+ G + + +++EE + +D+N GCP++ + + +G+G+L+ + + +
Sbjct: 69 IGVQIFGAELDSMMRAAEIVEEAQP-EVLDINFGCPVKKVVCKMAGAGILRDIDRMVELT 127
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + + LP+TVKTR G +++ I + +D G +++HGRTR Q Y +ADW +
Sbjct: 128 EAVVKSTKLPVTVKTRLGWDQNSIKIEEVAERLQDVGIKALSIHGRTRAQMYKGEADWSH 187
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I K ++N IH
Sbjct: 188 IAKV-----KENPRIH-------------------------------------------I 199
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E + K+ + G+MIGR A+ PWIF+EIK
Sbjct: 200 PIFGNGDIDSPEK-AKLYKERYGVDGIMIGRAAIGYPWIFREIK 242
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ V + PFR LCK+ G D+ +E L++ + + + + E GVQ+ G
Sbjct: 16 LAPMEDVSDPPFRALCKEQGCDMMYTEFISVEGLIRDAKKSVVKLDIYPEERPIGVQIFG 75
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+ + +++EE + +D+N GCP++ + + +G+G+L+
Sbjct: 76 AELDSMMRAAEIVEEAQP-EVLDINFGCPVKKVVCKMAGAGILR 118
>gi|449110805|ref|ZP_21747405.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
33521]
gi|449114381|ref|ZP_21750859.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
35404]
gi|448956533|gb|EMB37293.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
35404]
gi|448960179|gb|EMB40896.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
33521]
Length = 336
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICVDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|449108292|ref|ZP_21744936.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
33520]
gi|449118971|ref|ZP_21755372.1| nifR3 family putative TIM-barrel protein [Treponema denticola H1-T]
gi|449121360|ref|ZP_21757712.1| nifR3 family putative TIM-barrel protein [Treponema denticola
MYR-T]
gi|448951586|gb|EMB32399.1| nifR3 family putative TIM-barrel protein [Treponema denticola
MYR-T]
gi|448951999|gb|EMB32808.1| nifR3 family putative TIM-barrel protein [Treponema denticola H1-T]
gi|448962142|gb|EMB42836.1| nifR3 family putative TIM-barrel protein [Treponema denticola ATCC
33520]
Length = 334
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 136/341 (39%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 17 SGNIFLAPVAGYSDKAFRSICIDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 64 -SLIGRAP-----------------------------------------NEKAYAVQIFG 81
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 82 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 141
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 142 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRSQVYSGKADWNILAEL 201
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q K Q+ P++G
Sbjct: 202 VQFA-------------------------------------------KPYQI----PIFG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 215 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 254
>gi|433458253|ref|ZP_20416193.1| tRNA-dihydrouridine synthase, partial [Arthrobacter
crystallopoietes BAB-32]
gi|432193635|gb|ELK50343.1| tRNA-dihydrouridine synthase, partial [Arthrobacter
crystallopoietes BAB-32]
Length = 348
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 102/225 (45%), Gaps = 53/225 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G +P + ++L E+ D +D+N GCP+ + ++G GS L + ++ ++I
Sbjct: 86 VQLYGVDPKTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLFTAIIQA 145
Query: 433 MNEVSS---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
++ +P+T+K R GI +D+ + RD G + + LHGRT Q Y+ QADWD
Sbjct: 146 ATREAARGGIPLTIKMRKGIDEDHLTYIDAGRIARDAGVAAVALHGRTTSQFYSGQADWD 205
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
I + + +P
Sbjct: 206 SIAR-----------LREALPDI------------------------------------- 217
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDI S ED ++++ + G+++GRG +PW+F +++
Sbjct: 218 -PVLGNGDIWSAEDAVRMVQQT-GVDGIVVGRGCQGRPWLFGDLQ 260
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 63/111 (56%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N FRRLC+++G + SEM + L++ + + +I E E + VQL
Sbjct: 29 VVLAPMAGITNKAFRRLCREYGGGLYVSEMVTSRALVERNRESMRIISHDEDEKVRSVQL 88
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
G +P + ++L E+ D +D+N GCP+ + ++G GS L + +LF
Sbjct: 89 YGVDPKTVGAAVRMLVEEDRADHIDLNFGCPVPKVTRRGGGSALPWKIDLF 139
>gi|218134816|ref|ZP_03463620.1| hypothetical protein BACPEC_02719 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990201|gb|EEC56212.1| TIM-barrel protein, nifR3 family [[Bacteroides] pectinophilus ATCC
43243]
Length = 319
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 96/227 (42%), Gaps = 52/227 (22%)
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
N VQL G++P ++ + +EE + D +DVN+GCP+ + G GS L++ ++
Sbjct: 65 NPVAVQLFGSDPQIMADMAKRIEE-LPFDTIDVNMGCPVPKVVNNGEGSALMKNPLLVGQ 123
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
+++ M + P+TVK R G + D + G + + +HGRTREQ YT +ADW
Sbjct: 124 IVSAMAKAVKKPVTVKIRKGFNDDMINAPEIAHIIEESGGACVAVHGRTREQYYTGKADW 183
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
D I + Q +H
Sbjct: 184 DIIRQVKQR-------VH------------------------------------------ 194
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
P+ GNGDI L ++ VMIGR A PWIF+E+ E
Sbjct: 195 -IPVIGNGDITDALSARAMLDET-GCDAVMIGRAARGNPWIFREVSE 239
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 1/118 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + + L+P+ V +LPFR LCK+ G + SEM A ++ ++ L+K E+
Sbjct: 6 VEIKNNVILAPMAGVTDLPFRLLCKEQGCGMLYSEMVSAKAIMYNNRNTDELLKVRPEEN 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
VQL G++P ++ + +EE + D +DVN+GCP+ + G GS L++ L G
Sbjct: 66 PVAVQLFGSDPQIMADMAKRIEE-LPFDTIDVNMGCPVPKVVNNGEGSALMKNPLLVG 122
>gi|145219156|ref|YP_001129865.1| nifR3 family TIM-barrel protein [Chlorobium phaeovibrioides DSM
265]
gi|145205320|gb|ABP36363.1| tRNA-U20-dihydrouridine synthase [Chlorobium phaeovibrioides DSM
265]
Length = 354
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 132/337 (39%), Gaps = 107/337 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D + L+P+ V + FR+LCK+ GADI +E A L +
Sbjct: 6 LDIDRPVILAPMEDVTDRAFRQLCKRHGADIVYTEFVSAEALRR---------------- 49
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
GV+ K T+ L + P+E VQ
Sbjct: 50 --GVE----------KTTRKL------------IADPVE---------------RPIAVQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G+ +T+ ++ E D++D+N GCP + + +G+G+ LL+ + ++ +
Sbjct: 71 IFGSTVESMTEAARI-AESFEPDYLDINFGCPTKKVAGKGAGAALLREPEKMAAITEAVV 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
++P+T KTR G +D+ I + + + D G + LHGRTR + Y +ADWD+I +
Sbjct: 130 RAVNIPVTAKTRLGWDRDSINIIDVLRRLEDAGIQALALHGRTRSEMYKGRADWDWIAET 189
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ S P+
Sbjct: 190 VRHAS--------------------------------------------------IPVIA 199
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
NGD+ S ED + + + G+MIGRGA+ P+IF
Sbjct: 200 NGDVWSPEDALQMFNHTGA-EGIMIGRGAIGNPFIFS 235
>gi|345868113|ref|ZP_08820109.1| TIM-barrel , nifR3 family protein [Bizionia argentinensis JUB59]
gi|344047595|gb|EGV43223.1| TIM-barrel , nifR3 family protein [Bizionia argentinensis JUB59]
Length = 313
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 134/330 (40%), Gaps = 105/330 (31%)
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+ G N
Sbjct: 1 MEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDAAKSIMKLDIYEKERPVGIQIFGANL 60
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTK 385
+ + ++E+ D +D+N GCP++ + +G+G+G+L+ +C
Sbjct: 61 ESMLQTIDIVEKSNP-DIIDINFGCPVKKVVSKGAGAGILK-------DVC--------- 103
Query: 386 CTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445
L E++ + V +R N LP+TVKT
Sbjct: 104 ----LMEKLTAEMV---------------------KRTN--------------LPVTVKT 124
Query: 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505
R G D+ I + +D G I++HGRTR Q Y QADW I + ++N +
Sbjct: 125 RLGWDHDSIRILEVAERLQDVGCQAISIHGRTRAQMYKGQADWRPIAEV-----KNNPRM 179
Query: 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565
H P++GNGD+ + E
Sbjct: 180 H-------------------------------------------IPVFGNGDVDTPERAM 196
Query: 566 ESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E ++ + G MIGR ++ PW F+++K
Sbjct: 197 E-MRDVYGLDGCMIGRASIGNPWFFKQVKH 225
>gi|169343168|ref|ZP_02864189.1| putative dihydrouridine synthase [Clostridium perfringens C str.
JGS1495]
gi|169298720|gb|EDS80796.1| putative dihydrouridine synthase [Clostridium perfringens C str.
JGS1495]
Length = 326
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 52/224 (23%)
Query: 374 QLCGNNPYVLTKCTQ-LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
Q+ GN+P ++ T+ + +DVN+GCP I K G GS L++ + +++
Sbjct: 70 QMFGNDPEIMAYVTEKHFNTNDDICIIDVNMGCPAPKIVKNGEGSALMKNPKLAYEIMSS 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +V++ P+TVK R G ++N F + G I +HGRTR Q Y +A+WD I
Sbjct: 130 IKKVATKPVTVKFRMGFDEENINAVEFAKIMEEAGVDAIAVHGRTRAQMYEGKANWDII- 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
R K+A P+
Sbjct: 189 -------------------------------------RQVKEA------------VNIPV 199
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
GNGD+ + ED SLK + G+M+ RG++ PWIF++I +K
Sbjct: 200 IGNGDVFTAEDAL-SLKNQTNCDGIMVARGSMGNPWIFKQIVQK 242
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I + ++L+P+ V ++ FR LCK+ G I C+EM A L S L++ + E
Sbjct: 6 IVLENNVFLAPMAGVTDISFRGLCKEMGVGIVCTEMVSAKALYYGSENTKELMRIADEEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQ-LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
Q+ GN+P ++ T+ + +DVN+GCP I K G GS L++ L
Sbjct: 66 PVSCQMFGNDPEIMAYVTEKHFNTNDDICIIDVNMGCPAPKIVKNGEGSALMKNPKL 122
>gi|271967481|ref|YP_003341677.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270510656|gb|ACZ88934.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 373
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 74/333 (22%), Positives = 127/333 (38%), Gaps = 104/333 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ + N PFR LC++ G + EM L++ + + + +I+ +E +QL
Sbjct: 15 IVLAPMAGITNAPFRTLCREQGGGLFVCEMITTRALVERNAKTFKMIRFEPAEKPRSIQL 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G +P + K +++ ++ D VD+N GCP+ + ++G GS L + NL
Sbjct: 75 YGVDPVTVGKAVRMIADEDLADHVDLNFGCPVPKVTRRGGGSALPYKRNLL--------- 125
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
RA + ++V +LP
Sbjct: 126 -----------------------------------------RAILREAV----RNAGTLP 140
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+K R GI D+ + + G S I LHGRT Q Y ADW+ I + + +
Sbjct: 141 VTMKMRKGIDDDHLTYLDAGRIAVEEGVSAIALHGRTAVQHYGGTADWEAIARLKEAVTE 200
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ GNGDI S
Sbjct: 201 -------------------------------------------------IPVLGNGDIWS 211
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
D + ++ GV++GRG L +PW+F+++
Sbjct: 212 AADALRMMDET-GCDGVVVGRGCLGRPWLFRDL 243
>gi|451344471|ref|ZP_21913528.1| nifR3 family putative TIM-barrel protein [Eggerthia catenaformis OT
569 = DSM 20559]
gi|449336749|gb|EMD15920.1| nifR3 family putative TIM-barrel protein [Eggerthia catenaformis OT
569 = DSM 20559]
Length = 315
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 125/332 (37%), Gaps = 112/332 (33%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
++P+ + N+ FR+L K++G +T SEM + A+I R+
Sbjct: 1 MAPMAGITNIAFRKLIKEFGVGLTVSEMI----------SDKAIIYRN------------ 38
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLG-CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381
Q +D ++++ G PI QL G
Sbjct: 39 ---------------QKTLDMLEIDEGEHPISL-------------------QLFGGEAA 64
Query: 382 VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI 441
+ K + +EE D +D+N GCP+ + K G+GS L+ ++ + + S+P+
Sbjct: 65 SMAKAAKYIEEYTSADIIDINAGCPVNKVLKSGAGSDYLRDPKRAYEIVKAVTDTVSIPV 124
Query: 442 TVKTRTGI--HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
TVK R G H N I F G S + +HGRT+ Q Y QADW YI++ + S
Sbjct: 125 TVKMRIGFDTHSINCI--EMAKLFESAGVSALAIHGRTKSQFYEGQADWSYIKQVKENIS 182
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGDI
Sbjct: 183 --------------------------------------------------IPVIGNGDIR 192
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
+ ED + ++ VMIGRGA+ PW+ +
Sbjct: 193 TPEDAKRMIDET-GCDAVMIGRGAMGNPWLIK 223
>gi|423080865|ref|ZP_17069480.1| TIM-barrel protein, nifR3 family [Clostridium difficile
002-P50-2011]
gi|423087597|ref|ZP_17075984.1| TIM-barrel protein, nifR3 family [Clostridium difficile
050-P50-2011]
gi|357544630|gb|EHJ26632.1| TIM-barrel protein, nifR3 family [Clostridium difficile
050-P50-2011]
gi|357551945|gb|EHJ33724.1| TIM-barrel protein, nifR3 family [Clostridium difficile
002-P50-2011]
Length = 322
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 82/337 (24%), Positives = 134/337 (39%), Gaps = 109/337 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+ K++LSP+ V +LPFR +CK+ G + +EM + G
Sbjct: 9 KNKVFLSPMAGVTDLPFRLICKEQGCGLLYTEM------------------------ING 44
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
LC ++ K ++ EE+ V VQ+ G
Sbjct: 45 KALCYDDENT-KKMLKIEEEEHPV------------------------------AVQIFG 73
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+ P + + +++ + + +D+N+GCP + K G GS L++ + + V+ + + S
Sbjct: 74 SEPEFMGRAAEIMND-YSNEILDINMGCPAPKVVKNGDGSALMKNPKLAEEVLRAVVKNS 132
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
P+T+K R G DN++ + K D G S + +HGRTREQ Y+ +ADWD I + +
Sbjct: 133 KKPVTLKIRKG-WDDNSVNAVEIAKIAEDCGISALAIHGRTREQFYSGKADWDIIAEIKK 191
Query: 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
S P+ GNG
Sbjct: 192 NLS--------------------------------------------------IPVIGNG 201
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
D+ + ED L K+ +MIGRGA PWIF+ I
Sbjct: 202 DVFTIEDSINMLDKT-GCDAIMIGRGAQGNPWIFKRI 237
>gi|18311449|ref|NP_563383.1| dihydrouridine synthase [Clostridium perfringens str. 13]
gi|110799132|ref|YP_697155.1| dihydrouridine synthase [Clostridium perfringens ATCC 13124]
gi|110803269|ref|YP_699723.1| putative dihydrouridine synthase [Clostridium perfringens SM101]
gi|168206862|ref|ZP_02632867.1| putative dihydrouridine synthase [Clostridium perfringens E str.
JGS1987]
gi|168211211|ref|ZP_02636836.1| putative dihydrouridine synthase [Clostridium perfringens B str.
ATCC 3626]
gi|168215145|ref|ZP_02640770.1| putative dihydrouridine synthase [Clostridium perfringens CPE str.
F4969]
gi|168218227|ref|ZP_02643852.1| putative dihydrouridine synthase [Clostridium perfringens NCTC
8239]
gi|182626021|ref|ZP_02953784.1| putative dihydrouridine synthase [Clostridium perfringens D str.
JGS1721]
gi|422347532|ref|ZP_16428443.1| hypothetical protein HMPREF9476_02516 [Clostridium perfringens
WAL-14572]
gi|422875412|ref|ZP_16921897.1| putative dihydrouridine synthase [Clostridium perfringens F262]
gi|18146133|dbj|BAB82173.1| probable transcriptional regulator [Clostridium perfringens str.
13]
gi|110673779|gb|ABG82766.1| putative dihydrouridine synthase [Clostridium perfringens ATCC
13124]
gi|110683770|gb|ABG87140.1| putative dihydrouridine synthase [Clostridium perfringens SM101]
gi|170661755|gb|EDT14438.1| putative dihydrouridine synthase [Clostridium perfringens E str.
JGS1987]
gi|170710780|gb|EDT22962.1| putative dihydrouridine synthase [Clostridium perfringens B str.
ATCC 3626]
gi|170713442|gb|EDT25624.1| putative dihydrouridine synthase [Clostridium perfringens CPE str.
F4969]
gi|177908728|gb|EDT71239.1| putative dihydrouridine synthase [Clostridium perfringens D str.
JGS1721]
gi|182379765|gb|EDT77244.1| putative dihydrouridine synthase [Clostridium perfringens NCTC
8239]
gi|373223802|gb|EHP46146.1| hypothetical protein HMPREF9476_02516 [Clostridium perfringens
WAL-14572]
gi|380303623|gb|EIA15923.1| putative dihydrouridine synthase [Clostridium perfringens F262]
Length = 326
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 99/224 (44%), Gaps = 52/224 (23%)
Query: 374 QLCGNNPYVLTKCTQ-LLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
Q+ GN+P ++ T+ + +DVN+GCP I K G GS L++ + +++
Sbjct: 70 QMFGNDPEIMAYVTEKHFNTNDDICIIDVNMGCPAPKIVKNGEGSALMKNPKLAYEIMSS 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +V++ P+TVK R G ++N F + G I +HGRTR Q Y +A+WD I
Sbjct: 130 IKKVATKPVTVKFRMGFDEENINAVEFAKIMEEAGVDAIAVHGRTRAQMYEGKANWDII- 188
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
R K+A P+
Sbjct: 189 -------------------------------------RQVKEA------------VNIPV 199
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
GNGD+ + ED SLK + G+M+ RG++ PWIF++I +K
Sbjct: 200 IGNGDVFTAEDAL-SLKNQTNCDGIMVARGSMGNPWIFKQIVQK 242
Score = 72.8 bits (177), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I + ++L+P+ V ++ FR LCK+ GA I C+EM A L S L++ + E
Sbjct: 6 IVLENNVFLAPMAGVTDISFRGLCKEMGAGIVCTEMVSAKALYYGSENTKELMRIADEEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQ-LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
Q+ GN+P ++ T+ + +DVN+GCP I K G GS L++ L
Sbjct: 66 PVSCQMFGNDPEIMAYVTEKHFNTNDDICIIDVNMGCPAPKIVKNGEGSALMKNPKL 122
>gi|408369496|ref|ZP_11167277.1| nifR3 family TIM-barrel protein [Galbibacter sp. ck-I2-15]
gi|407745242|gb|EKF56808.1| nifR3 family TIM-barrel protein [Galbibacter sp. ck-I2-15]
Length = 330
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 137/334 (41%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVYTEFISSEGLIRDAAKSVIKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + +++E+ D +D+N GCP++ + + +G+G+L+ L
Sbjct: 74 FGAELDSMLQAVEIVEKSNP-DIIDINFGCPVKKVVCKNAGAGILRDIPL---------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+L EE +++R N LP
Sbjct: 123 -----MVKLTEE--------------------------MVKRTN--------------LP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I++HGRTR Q Y A+W E AQ+
Sbjct: 138 ITVKTRLGWDSDSIKIVEVAERLQDVGIQAISIHGRTRVQMYKGHANW---EPIAQV--- 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
NN P+ YI P++GNGD+ +
Sbjct: 192 KNN------PRM--------------------------YI----------PVFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E ++ + G MIGR ++ PW F+E+K
Sbjct: 210 PE-MAVKMRDQYGLDGAMIGRASIGYPWFFREVK 242
>gi|449126601|ref|ZP_21762886.1| nifR3 family putative TIM-barrel protein [Treponema denticola SP33]
gi|448946515|gb|EMB27370.1| nifR3 family putative TIM-barrel protein [Treponema denticola SP33]
Length = 337
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 106/341 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
G ++L+P+ + FR +C GAD T +EM V++E AL++ + +
Sbjct: 18 SGNIFLAPVAGYSDKAFRSICIDCGADFTYTEM-VSSE---------ALVRDSDKTE--- 64
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
L G P + VQ+ G
Sbjct: 65 -SLIGRAP-----------------------------------------NEKAYAVQIFG 82
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+NP + K ++ E+ + +D+N GCP+ I K G+GS L+ +L ++ +N+
Sbjct: 83 SNPEYMAKTAVIIAEKYSPECIDINSGCPMAKITKNGAGSALMTDIPLLYRIVKAVNDAM 142
Query: 438 S---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +P+T+K R+G D D G ++TLH RTR Q Y+ +ADW+ + +
Sbjct: 143 APYKIPVTLKIRSGFTADKLNWKEAASAAIDAGVKMLTLHPRTRTQVYSGKADWNILAEL 202
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
Q ++ + I P++G
Sbjct: 203 VQF-AKPHQI----------------------------------------------PIFG 215
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+GD+ S ED + L+++ +G+M RGA+ P+IF + +E
Sbjct: 216 SGDLFSPEDAKKMLEET-GCAGIMFARGAMGNPFIFTQTRE 255
>gi|46202328|ref|ZP_00053405.2| COG0042: tRNA-dihydrouridine synthase [Magnetospirillum
magnetotacticum MS-1]
Length = 335
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 140/334 (41%), Gaps = 108/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++P RRL K+ GA + SEM +A++ A+I+++
Sbjct: 20 VILAPMAGVTDMPNRRLVKRLGAGLVVSEM-IASQ---------AMIRQN---------- 59
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ T + + A +F P+ VQL G P
Sbjct: 60 ---------RQTMQMAQHTAEEF-------PMS-------------------VQLAGCEP 84
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG-SGSGLLQRANILQSVITCMNEVSSL 439
V+ + +L + + V +D+N+GCP++ + +G +GS L++ N+ +++ + + +
Sbjct: 85 KVMAEAAKL-NQDLGVAIIDINMGCPVKKVALKGEAGSALMRNENLAARIMSAVVKAVDI 143
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+K RTG ++ + + G ++T+HGRTR Q YT QADW +I + + S
Sbjct: 144 PVTLKMRTGWDMNSRNAPSLARVAEECGIRMVTVHGRTRNQMYTGQADWAFIGEVKRAVS 203
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGD+
Sbjct: 204 --------------------------------------------------IPVIGNGDVE 213
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S +D L+ S + GVMIGRG +PW+ ++
Sbjct: 214 SIDDAVRMLELSDA-DGVMIGRGTYGRPWLPGQV 246
>gi|453052312|gb|EME99797.1| putative dihydrouridine synthase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 377
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 130/338 (38%), Gaps = 106/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM L++ + LI SE
Sbjct: 12 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERDAKTMRLIHFDGSEKP 71
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
+QL G +P + + +++ ++ D +D+N GCP+ + ++G GS L + NL
Sbjct: 72 RSIQLYGVDPLYVGRAVRMIVDEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLL---- 127
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
RA + ++V
Sbjct: 128 ----------------------------------------------RAILREAV----GN 137
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
SLP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 138 AGSLPVTMKMRKGIDDDHITFLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDSIAR-- 195
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ +P+ P+ GN
Sbjct: 196 ---------LKEAVPEI--------------------------------------PVLGN 208
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 209 GDIWSADDAVRMMRET-GCDGVVVGRGCLGRPWLFGDL 245
>gi|326798717|ref|YP_004316536.1| hypothetical protein [Sphingobacterium sp. 21]
gi|326549481|gb|ADZ77866.1| TIM-barrel protein, nifR3 family [Sphingobacterium sp. 21]
Length = 333
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 132/335 (39%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ G D+ +E + L+ RH +
Sbjct: 16 LLLAPMEDVSDPPFRYVCKQNGVDMMYTEFISSEGLI-----------RHAA-------- 56
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
K Q L+ + + G+Q+ G++
Sbjct: 57 ---------KSKQKLD---------------------------IFEYERPIGIQIFGSDI 80
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + T++ D +D+N GCP++ + +G+G+ LLQ + + ++ + + LP
Sbjct: 81 KSMEEATEIATLAKP-DLIDINYGCPVKNVACRGAGASLLQDIDKMVAMTKAVVNATHLP 139
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G I+ + +D G +++HGRTR Q Y ADW I+K +
Sbjct: 140 VTVKTRLGWDDHTKNIYEVAERLQDIGIQALSIHGRTRSQMYKGSADWSLIKKV-----K 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N IH P++GNGD+ S
Sbjct: 195 KNPRIH-------------------------------------------IPIFGNGDVDS 211
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
E + + + G+MIGR ++ PWIF+EIK
Sbjct: 212 VEK-AAAWRLEYEVDGIMIGRASIGYPWIFREIKH 245
>gi|150392209|ref|YP_001322258.1| nifR3 family TIM-barrel protein [Alkaliphilus metalliredigens QYMF]
gi|149952071|gb|ABR50599.1| putative TIM-barrel protein, nifR3 family [Alkaliphilus
metalliredigens QYMF]
Length = 321
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 99/223 (44%), Gaps = 54/223 (24%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+Q+ G+ P ++ K +L ++ + +D+N+GCP I K G GS L+ V+
Sbjct: 68 ALQIFGSEPDIMAKAAYMLNDRENI-ILDINMGCPTPKIVKNGDGSALMLDPPRAARVVK 126
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ S P+TVK R G WD
Sbjct: 127 AVVRESIKPVTVKIRKG---------------------------------------WD-- 145
Query: 492 EKCAQLCSRDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
D I M K D GA I +HGRTREQ Y+ +ADWD I++ + +
Sbjct: 146 ---------DKQINAVEMAKILEDSGAQAIAVHGRTREQFYSGKADWDIIKQVKEAVT-I 195
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ GNGD+ S ED + L+++ G+MIGRGA PWIF+ +
Sbjct: 196 PVIGNGDVFSVEDARDMLEQT-QCDGIMIGRGAQGNPWIFKRV 237
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I K++L+P+ V +LPFR +CKK G+ + EM A L + L++ H E
Sbjct: 6 ISLHSKVFLAPMAGVTDLPFRLICKKMGSGMVYMEMVSAKGLYYGDKKTERLLQIHPEEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
+Q+ G+ P ++ K +L ++ + +D+N+GCP I K G GS L+
Sbjct: 66 PAALQIFGSEPDIMAKAAYMLNDRENI-ILDINMGCPTPKIVKNGDGSALM 115
>gi|78188223|ref|YP_378561.1| dihydrouridine synthase TIM-barrel protein nifR3 [Chlorobium
chlorochromatii CaD3]
gi|78170422|gb|ABB27518.1| tRNA-U20-dihydrouridine synthase [Chlorobium chlorochromatii CaD3]
Length = 348
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 131/334 (39%), Gaps = 107/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + FR+LCK+ GADI +E A L + + + +K + E + +Q+
Sbjct: 12 IILAPMEDVTDRSFRQLCKRHGADIVYTEFISAEALRRGAEKSLRKLKVDDMERPYAIQI 71
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G+ + + ++ D++D+N GCP++ + +G+G+ LL+
Sbjct: 72 FGSTVESMVEAA-IIAASYQPDYLDINFGCPVKKVAGKGAGAALLRE------------- 117
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
E+M A I +V+ + ++P
Sbjct: 118 ----------PEKM----------------------------AAISAAVVKAV----AIP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T KTR G D+ I + +P+ D G + LHGRTR Q Y ADW +I
Sbjct: 136 VTAKTRIGWDFDSINILDIIPRLEDAGIQALALHGRTRSQMYKGTADWQWI--------- 186
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ A+ + PL NGDI +
Sbjct: 187 -----------------------------------------RAAKEKAHIPLIANGDIWN 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
ED + + GVMIGRG++ P+IFQ+ K
Sbjct: 206 AEDAARMFDVTAA-DGVMIGRGSIGNPFIFQQAK 238
>gi|160878583|ref|YP_001557551.1| NifR3 family TIM-barrel protein [Clostridium phytofermentans ISDg]
gi|160427249|gb|ABX40812.1| TIM-barrel protein, nifR3 family [Clostridium phytofermentans ISDg]
Length = 324
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 58/226 (25%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+QL G +PY++++ + +E + DF+D+N+GCP+ + G GS L+ + + +++
Sbjct: 70 ALQLFGEDPYIMSEMAKRIEHRNF-DFLDINMGCPVPKVVNNGEGSALMLKPERIGEIVS 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+++ P+TVK R G KDN G + I +HGRTREQ Y+ +ADWD I
Sbjct: 129 AISKAIKKPVTVKIRKGFTKDNINAVEVAKVIEQSGGAAIAVHGRTREQYYSGEADWDII 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ + S P
Sbjct: 189 KAVKEAVS--------------------------------------------------IP 198
Query: 552 LYGNGDILSYEDYTESLKKSPSISG---VMIGRGALIKPWIFQEIK 594
+ GNGD+ + ED +K+ S +G VMI RG PW F + K
Sbjct: 199 VIGNGDVQTPED----VKRMMSYTGCDAVMIARGVRGNPWFFSQAK 240
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ G L L P+ V +LPFR LCK+ GAD+ +EM A + ++ L++ E E
Sbjct: 8 VNINGNLVLGPMAGVTDLPFRLLCKEQGADLIYTEMVSAKGIYYNNKNTEVLLEVEEKER 67
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
+QL G +PY++++ + +E + DF+D+N+GCP+ + G GS L+ + G
Sbjct: 68 PVALQLFGEDPYIMSEMAKRIEHR-NFDFLDINMGCPVPKVVNNGEGSALMLKPERIG 124
>gi|406991004|gb|EKE10583.1| tRNA-dihydrouridine synthase [uncultured bacterium]
Length = 323
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 133/335 (39%), Gaps = 106/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ + + FR +C ++GAD+ SEMA + L + L+K + SE
Sbjct: 14 LALAPMAGITDSAFREICMRYGADVAYSEMASVSALFFKPEKTLELLKFNASE------- 66
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
PYV +QL G +P
Sbjct: 67 ---RPYV---------------------------------------------IQLFGKDP 78
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ Q++ ++ D +D+N GCP + ++ GSG L+ + ++ + +I+ + E + LP
Sbjct: 79 EHFARAAQIVSSKIKPDGIDINFGCPAKKVFGHGSGCALMPQTDLARKIISAVCENTDLP 138
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+++K R GI + F+ + +D S + +HGRT E ++ Q ++ +E+
Sbjct: 139 VSIKIRAGI--KDLAATEFIERIKDLPFSAVMVHGRTYEGGFSGQLNFSIVEE------- 189
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
I +P D I + NG I
Sbjct: 190 ----IKKIIP---------------------------DKI-----------VLANGGIHL 207
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+D E LKK P I G+ + RG KP++F +IKE
Sbjct: 208 PQDGMEILKKYPLIDGLGLARGVWGKPYLFSQIKE 242
>gi|410027567|ref|ZP_11277403.1| tRNA-U20-dihydrouridine synthase [Marinilabilia sp. AK2]
Length = 329
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/351 (24%), Positives = 142/351 (40%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E Q L L+P+ V + PFR +CK+ GAD+ +E + L++ + +
Sbjct: 1 MVKIGNLELG----QFPLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKS 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ E E G+Q+ GN + + + E D +D+N GCP+ + +G+G+G
Sbjct: 57 IQKLDIFEYERPIGIQIFGNEIESM-REAAAIAEAAGPDILDINYGCPVHKVACKGAGAG 115
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+L + K + E +++R
Sbjct: 116 ILLD---------------IDKMVAMTAE--------------------------IVKRV 134
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
NI P+TVKTR G D I + +D G I++H RTR+Q Y
Sbjct: 135 NI--------------PVTVKTRLGWSHDTIRIVEVAERLQDVGIQAISIHARTRQQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW Y+ + +DN P+ +
Sbjct: 181 GEADWSYLNQV-----KDN-------PRLK------------------------------ 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E ++ ++ ++ G+MIGR ++ PW+F EIK
Sbjct: 199 ------IPVFGNGDIDSPEK-AKAYREKYNVDGMMIGRASIGYPWVFNEIK 242
>gi|419621426|ref|ZP_14154680.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23216]
gi|380601932|gb|EIB22233.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23216]
Length = 308
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL++ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLEKLELF 119
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 106/252 (42%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL++ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLEKLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|346308695|ref|ZP_08850805.1| hypothetical protein HMPREF9457_02514 [Dorea formicigenerans
4_6_53AFAA]
gi|345902352|gb|EGX72133.1| hypothetical protein HMPREF9457_02514 [Dorea formicigenerans
4_6_53AFAA]
Length = 318
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 52/223 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G++P ++++ + +E+ + +D+N+GCP+ + K G GS L++ ++ +++
Sbjct: 69 LQLFGSDPKIISEQAKRIED-LPFQILDINMGCPVPKVVKNGEGSALMKNPKLVFEIVSQ 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + P+TVK R G D+ + GAS + +HGRTREQ Y+ +ADWD I
Sbjct: 128 LVKAIEKPVTVKIRKGFDDDHINAVEIAKIAEEAGASAVAVHGRTREQYYSGEADWDIIR 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + +H P+
Sbjct: 188 QVKE------------------------AVH--------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ S E + ++K GVMIGRG PWIF+E+ E
Sbjct: 198 IGNGDVTSAEKAAK-MRKITGCDGVMIGRGVQGNPWIFRELAE 239
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + L+P+ V +LPFR LCK+ GA + C EM A L + L+ H E
Sbjct: 6 LELENPYILAPMAGVTDLPFRLLCKEQGAGLLCMEMISAKALQYKNKNTKVLLAIHPQEY 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G++P ++++ + +E+ + +D+N+GCP+ + K G GS L++ L
Sbjct: 66 PVSLQLFGSDPKIISEQAKRIED-LPFQILDINMGCPVPKVVKNGEGSALMKNPKL 120
>gi|336172111|ref|YP_004579249.1| nifR3 family TIM-barrel protein [Lacinutrix sp. 5H-3-7-4]
gi|334726683|gb|AEH00821.1| TIM-barrel protein, nifR3 family [Lacinutrix sp. 5H-3-7-4]
Length = 331
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/351 (23%), Positives = 140/351 (39%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E L L+P+ V + PFR LCK+ GAD+ V TE + S
Sbjct: 1 MVKIDNIELPDF----PLLLAPMEDVSDPPFRALCKEQGADV------VYTEFVSSE--- 47
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
LI+ + M +D
Sbjct: 48 -GLIR------------------------NAAKSVMKLD--------------------- 61
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+ ++ G+Q+ G N + + ++ D +D+N GCP++ + +G+G+G+L+
Sbjct: 62 IYEKERPVGIQIFGANMDSMLETIDIVSASNP-DIIDINFGCPVKKVVSKGAGAGILKDI 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+++ + M + +++PITVKTR G D+ I + +D G I +HGRTR Q Y
Sbjct: 121 CLMEQLTAEMVKRTNIPITVKTRLGWDHDSIKIVEVAERLQDVGCKAIAIHGRTRAQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW I + ++N +H
Sbjct: 181 GEADWKPIAQV-----KNNPRMH------------------------------------- 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGD+ S E E ++ + G MIGR + PW F+++K
Sbjct: 199 ------IPVFGNGDVTSPERAME-MRDDYGLDGCMIGRATIGNPWFFKQVK 242
>gi|160893102|ref|ZP_02073890.1| hypothetical protein CLOL250_00648 [Clostridium sp. L2-50]
gi|156865185|gb|EDO58616.1| TIM-barrel protein, nifR3 family [Clostridium sp. L2-50]
Length = 317
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 56/237 (23%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
+D+ KL L+P+ V + PFR L K+ G DI +EM A L + L+ ED
Sbjct: 1 MDFTNKLVLAPMAGVCDQPFRLLAKEQGCDILYTEMISAKGLYYDNKNTVPLLAVSPEED 60
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
GVQL G++P +L + + +E++ FVDVN+GCP+ I G GS L++
Sbjct: 61 PIGVQLFGSDPELLAEMAKKIEDR-GFAFVDVNMGCPVPKIVNNGEGSALMK-------- 111
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP ++ K +++ M
Sbjct: 112 ----NPLLIGK-------------------------------------------IVSAMT 124
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ LP+T+K R+G ++ + G + + +HGRTREQ Y ADW I
Sbjct: 125 KACKLPVTIKIRSGFDSEHINAPEVAHIAEESGVAAVAVHGRTREQYYHGHADWGVI 181
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + + +HGRTREQ Y ADW I + P+ GNGDIL+ ED +K+ +
Sbjct: 157 GVAAVAVHGRTREQYYHGHADWGVIADVKAAVN-IPVIGNGDILTPEDVIR-MKEQTNCD 214
Query: 576 GVMIGRGALIKPWIFQEIK 594
MIGRGA PWIF E+K
Sbjct: 215 AFMIGRGARGNPWIFHELK 233
>gi|126662469|ref|ZP_01733468.1| probable TIM-barrel protein, NifR3 family [Flavobacteria bacterium
BAL38]
gi|126625848|gb|EAZ96537.1| probable TIM-barrel protein, NifR3 family [Flavobacteria bacterium
BAL38]
Length = 316
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 50/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G + + +++++ + D VD+N GCP++ + +G+G+G+L+ +++ +
Sbjct: 52 GIQIFGGDEEAMEMSSRIVD-AVQPDLVDINFGCPVKKVVCKGAGAGVLKDVDLMVRLTK 110
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + +SLP+TVKTR G + + I + +D G +T+H RTR Q Y +DW +I
Sbjct: 111 AVIKGTSLPVTVKTRLGWDESSINIDEVAERLQDIGVQALTVHARTRAQMYKGHSDWSHI 170
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++ + P+ IT+ P
Sbjct: 171 QRIKE------------NPR--------ITM----------------------------P 182
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++GNGDI S E E K + G+MIGR A+ PWIF EIK
Sbjct: 183 IFGNGDIDSPEKALE-YKNKFGLDGMMIGRAAIGYPWIFNEIK 224
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 60/106 (56%), Gaps = 1/106 (0%)
Query: 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNP 325
+ V + PFRRLCK GAD+ SE + L++ + + + + E G+Q+ G +
Sbjct: 1 MEDVSDPPFRRLCKLHGADLMYSEFISSEGLIRDAMKSKQKLDIFDYERPVGIQIFGGDE 60
Query: 326 YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ ++++ + + D VD+N GCP++ + +G+G+G+L+ +L
Sbjct: 61 EAMEMSSRIV-DAVQPDLVDINFGCPVKKVVCKGAGAGVLKDVDLM 105
>gi|402819210|ref|ZP_10868779.1| putative nitrogen regulation protein [alpha proteobacterium
IMCC14465]
gi|402511914|gb|EJW22174.1| putative nitrogen regulation protein [alpha proteobacterium
IMCC14465]
Length = 359
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/335 (24%), Positives = 126/335 (37%), Gaps = 95/335 (28%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
G + L+P++ V +LPFR+L K G D +EM + L++ P +++R D
Sbjct: 16 GLVALAPMSGVTDLPFRKLSLKAGCDWVVTEMVASEPLVQVRPD---VVRRMAGFD---- 68
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
E G+G LF +QL G
Sbjct: 69 -------------------------------DDTEITDNTGAGG-----KKLFIIQLAGR 92
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+PY + +L +E D VD+N+GCP + SGS L++ ++ +I + S
Sbjct: 93 DPYWMGLGAKLAQEAGA-DMVDINMGCPSRQVTGGLSGSALMREEDLAMDIIKATVDAVS 151
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T+K R G D+ K G IT+HGRTR Q Y QADW ++
Sbjct: 152 IPVTLKMRLGWDHDSLNAPEIAAKAEQLGVYFITVHGRTRCQFYKGQADWKAVKNVVDAV 211
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
S P+ NGDI
Sbjct: 212 S--------------------------------------------------LPVIVNGDI 221
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ + +L+ S + + VMIGR A+ PW+ E+
Sbjct: 222 TTAKHAQTALELSGA-AAVMIGRAAMGNPWLLNEV 255
>gi|406661147|ref|ZP_11069271.1| putative tRNA-dihydrouridine synthase [Cecembia lonarensis LW9]
gi|405555089|gb|EKB50139.1| putative tRNA-dihydrouridine synthase [Cecembia lonarensis LW9]
Length = 329
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 84/351 (23%), Positives = 143/351 (40%), Gaps = 109/351 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++KI N E + L L+P+ V + PFR +CK+ GAD+ +E + L++ + +
Sbjct: 1 MVKIGNLELGEF----PLLLAPMEDVSDPPFRAVCKENGADLMYTEFISSEGLIRDAAKS 56
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ E E G+Q+ GN + + + E D +D+N GCP+ + +G+G+G
Sbjct: 57 VQKLDIFEYERPIGIQIFGNEIESM-REAAAIAEAAGPDILDINYGCPVHKVACKGAGAG 115
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+L + K + E +++R
Sbjct: 116 ILLD---------------IDKMVAMTAE--------------------------IVKRV 134
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
NI P+TVKTR G +D I + +D G I++H RTR+Q Y
Sbjct: 135 NI--------------PVTVKTRLGWSQDTIRIVEVAERLQDVGIQAISIHARTRQQMYK 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
+ADW Y+ + +DN P+ +
Sbjct: 181 GEADWSYLNQV-----KDN-------PRLK------------------------------ 198
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI S E ++ ++ ++ G+MIGR ++ PW+F EIK
Sbjct: 199 ------IPVFGNGDIDSPEK-AKAYREKYNVDGMMIGRASIGYPWVFNEIK 242
>gi|376316181|emb|CCF99579.1| tRNA-dihydrouridine synthase [uncultured Flavobacteriia bacterium]
Length = 331
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 104/223 (46%), Gaps = 50/223 (22%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+Q+ G N + + +++E D +D+N GCP++ + +G+G+G+L+ +++ S+
Sbjct: 70 GIQIFGANLESMLQSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDLMVSLTE 128
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
M + ++LPITVKTR G ++ I + +D G I++HGRTR Q Y +ADW I
Sbjct: 129 AMVKHTNLPITVKTRLGWDHESIKILEVAERLQDVGCKAISIHGRTRAQMYKGEADWRPI 188
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
++N +H P
Sbjct: 189 AAV-----KNNPRMH-------------------------------------------IP 200
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
++GNGD+ + E ++ + G MIGR ++ PW F+E+K
Sbjct: 201 VFGNGDVDTPEK-AALMRDEYGLDGAMIGRASIGYPWFFKEVK 242
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 64/110 (58%), Gaps = 1/110 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKEQGADVVFTEFISSEGLIRDAAKSVMKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
G N + + +++E D +D+N GCP++ + +G+G+G+L+ +L
Sbjct: 74 FGANLESMLQSVEIVEASKP-DIIDINFGCPVKKVVSKGAGAGILKDIDL 122
>gi|409097216|ref|ZP_11217240.1| nifR3 family TIM-barrel protein [Pedobacter agri PB92]
Length = 335
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 114/251 (45%), Gaps = 59/251 (23%)
Query: 353 EFIYKQG---SGSGLLQRANLF------GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
EFI +G + LQ+ ++F G+Q+ G + + + +++ D VD+N
Sbjct: 43 EFISSEGLIRDAAKSLQKLDIFEYERPIGIQIFGGDIEHMREASEIASAAGP-DLVDINY 101
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
GCP++ + +G+GS LL+ + + + + + S LP+TVKTR G D+ ++ +
Sbjct: 102 GCPVKNVVCKGAGSSLLRDIDKMVKMTEAVVKASHLPVTVKTRLGWDDDSKNVYEVAERL 161
Query: 464 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523
+D G +T+HGRTR Q Y +ADW I + + P+ +
Sbjct: 162 QDVGIQALTIHGRTRAQLYKGEADWSLIREIKR------------NPRIK---------- 199
Query: 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583
P++GNGD+ S E + + + G+MIGR A
Sbjct: 200 --------------------------IPIFGNGDVDSPEK-AANWRMEYEVDGIMIGRAA 232
Query: 584 LIKPWIFQEIK 594
+ PWIF+E+K
Sbjct: 233 IGYPWIFREVK 243
Score = 62.8 bits (151), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR +CK+ GAD+ +E + L++ + + + E E G+Q+
Sbjct: 15 LLLAPMEDVSDPPFRYVCKQNGADLMYTEFISSEGLIRDAAKSLQKLDIFEYERPIGIQI 74
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G + + + ++ + D VD+N GCP++ + +G+GS LL+
Sbjct: 75 FGGDIEHMREASE-IASAAGPDLVDINYGCPVKNVVCKGAGSSLLR 119
>gi|258620655|ref|ZP_05715692.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM573]
gi|258587170|gb|EEW11882.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM573]
Length = 331
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 136/353 (38%), Gaps = 112/353 (31%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D++KI N + K L ++P+ V + PFR LC ++GA + SEM + +P
Sbjct: 8 DVLKIGNHQLKN-----NLIVAPMAGVTDRPFRELCLRYGAGMAVSEM------MSCNPA 56
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
W K +++ SG
Sbjct: 57 LWKTAKSQN-----------------------------------------RMVHEGESG- 74
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+ VQ+ G++P ++ + Q E +D+N+GCP + + K+ +GS LL+
Sbjct: 75 -------IRSVQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLRH 126
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
++++S++ + ++P+T+KTRTG DN + D G + LHGRTR Y
Sbjct: 127 PDVIESILKTVVNAVNVPVTLKTRTGWDTDNRNCVSIAQLAEDCGIQALALHGRTRACMY 186
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+A++D I K
Sbjct: 187 KGEAEYDSI--------------------------------------------------K 196
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ P+ NGDI S E L+ + + +MIGR A +PWIFQEI+
Sbjct: 197 AVKAAVSIPVIANGDIDSPEKARYVLEYTGA-DALMIGRPAQGRPWIFQEIQH 248
>gi|315644402|ref|ZP_07897542.1| TIM-barrel protein, nifR3 family [Paenibacillus vortex V453]
gi|315280279|gb|EFU43571.1| TIM-barrel protein, nifR3 family [Paenibacillus vortex V453]
Length = 343
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/348 (23%), Positives = 132/348 (37%), Gaps = 111/348 (31%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D +KI N E K ++ L+P+ V N FR + K++G + C+EM ++
Sbjct: 2 DKLKIANIEMKN-----QVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVH---- 52
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
GN + ++L FVD
Sbjct: 53 -------------------GNK-----RTQEML-------FVD----------------- 64
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+R +Q+ G + L + +++++Q D +D+N+GCP + K +G+ L
Sbjct: 65 ---EREKPLSLQIFGGDRDSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLN 121
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+N + ++ + + + P+TVK RTG D+ G +++HGRTREQ Y
Sbjct: 122 SNKIYEMVAAVVDAVNKPVTVKMRTGWDSDHIYAVENAQAVERAGGQAVSVHGRTREQLY 181
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
T ADWD I + + S
Sbjct: 182 TGHADWDIIRQVKEAVS------------------------------------------- 198
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
P+ GNGD+++ ED L + GVMIGRGAL PW+
Sbjct: 199 -------IPVIGNGDVVTPEDARRMLDIT-GCDGVMIGRGALGNPWML 238
>gi|345015033|ref|YP_004817387.1| nifR3 family TIM-barrel protein [Streptomyces violaceusniger Tu
4113]
gi|344041382|gb|AEM87107.1| TIM-barrel protein, nifR3 family [Streptomyces violaceusniger Tu
4113]
Length = 406
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/338 (22%), Positives = 129/338 (38%), Gaps = 106/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM L++ + LI SE
Sbjct: 26 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERDAKTMRLIHFDGSEKP 85
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
+QL G +P + K Q++ ++ D +D+N GCP+ + ++G GS L + +L
Sbjct: 86 RSIQLYGVDPMTVGKAVQMIVDENLADHIDLNFGCPVPKVTRKGGGSALPYKRHLL---- 141
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
+IL+ +T
Sbjct: 142 -----------------------------------------------RSILREAVTA--- 151
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
LP+T+K R GI D+ + + G + I LHGRT Q Y ADW+ I +
Sbjct: 152 AGPLPVTMKMRKGIDDDHITFLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWEAIAR-- 209
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ +P+ P+ GN
Sbjct: 210 ---------LKEAVPEI--------------------------------------PVLGN 222
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 223 GDIWSADDAVRMMRET-GCDGVVVGRGCLGRPWLFGDL 259
>gi|313139725|ref|ZP_07801918.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
gi|313132235|gb|EFR49852.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB
41171]
Length = 413
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 130/335 (38%), Gaps = 104/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
+ LSP+ V N PFR LC+++G D + +EM A L+ +P+ L + SE + +Q
Sbjct: 48 VVLSPMAGVTNWPFRVLCEEYGPDGLYVAEMITARALVARNPKALRLCRFAPSERIRSLQ 107
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
L G NP ++ + +++ ++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 108 LYGVNPAIVEQAARIVVDEDMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF-------- 159
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
I+Q V+ + +++
Sbjct: 160 -------------------------------------------REIIQRVVKVCS-AANI 175
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T K R GI + ++ G + +TLH RT + Y +DW I +
Sbjct: 176 PVTAKIRVGIDHSHETFMEAGHIAQEEGCAAVTLHARTTAEYYGGHSDWSRIGELVGALD 235
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
+P F GNGDI
Sbjct: 236 ---------IPVF-----------------------------------------GNGDIW 245
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+D E ++++ +GV IGRG +PW+F +I+
Sbjct: 246 GADDALEMVRET-GCAGVAIGRGCQGRPWLFADIR 279
>gi|415720570|ref|ZP_11468045.1| NifR3-like protein [Gardnerella vaginalis 00703Bmash]
gi|415723574|ref|ZP_11469580.1| NifR3-like protein [Gardnerella vaginalis 00703C2mash]
gi|388061741|gb|EIK84385.1| NifR3-like protein [Gardnerella vaginalis 00703Bmash]
gi|388063422|gb|EIK86006.1| NifR3-like protein [Gardnerella vaginalis 00703C2mash]
Length = 384
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 136/354 (38%), Gaps = 110/354 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IK + KI + LSP+ + N PFR +C+++G D + +EM A
Sbjct: 3 FSIKPVDLGKIHIATPVVLSPMAGITNWPFRVICREYGPDGLYVAEMITAR--------- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
AL+ R NP L C E++
Sbjct: 54 -ALVAR--------------NPKALRLCRFAPSEKVR----------------------- 75
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+QL G +P ++ + +++ ++ + D VD+N GCP+ + ++G GS L +
Sbjct: 76 --------SLQLYGVDPLIVEQAARIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKT 127
Query: 424 NILQSVITCMNEV---SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
++LQ ++ + V + +P+T K R GI +D+ ++ G + +TLH RT +
Sbjct: 128 DLLQEILHRVVSVCNPAGIPVTAKFRVGIDEDHETFMQAGHIAQEEGCAAVTLHARTTAE 187
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
Y +DW I + +
Sbjct: 188 YYGGHSDWSRISELVEALD----------------------------------------- 206
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI +D K++ +GV IGRG +PWIF +I+
Sbjct: 207 ---------IPVFGNGDIWGADDALAMFKET-GCAGVAIGRGCQGRPWIFADIR 250
>gi|193214513|ref|YP_001995712.1| nifR3 family TIM-barrel protein [Chloroherpeton thalassium ATCC
35110]
gi|193087990|gb|ACF13265.1| TIM-barrel protein, nifR3 family [Chloroherpeton thalassium ATCC
35110]
Length = 402
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 52/223 (23%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+Q+ GN + + Q+ E DF+D+N GCP + + +G+GSGLL + ++++ +
Sbjct: 112 AIQIFGNQIEPMVEAAQMAEAAGP-DFIDINYGCPAKKVAGKGAGSGLLCQPDLMEKITD 170
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + LP+T KTR G + + I + + + G +++HGRTR Q Y +ADW +I
Sbjct: 171 AVVKAVRLPVTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGRADWSWI 230
Query: 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
+ ++ + P
Sbjct: 231 ARAKEVAT--------------------------------------------------IP 240
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ GNGDI + ED ++ + GVMIGRGA+ P++F+E K
Sbjct: 241 IIGNGDIWTAEDAKRMFDET-GVDGVMIGRGAIGNPFLFREAK 282
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 94/196 (47%), Gaps = 11/196 (5%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+I+ + + L+P+ V + FRRLCK +GADI +E + L++ + + + + E
Sbjct: 49 QIEIEKPVILAPMEDVTDPSFRRLCKHYGADIVFTEFISSDGLIRHAVKSKRKLDVFDDE 108
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF-- 371
+Q+ GN + + Q + E DF+D+N GCP + + +G+GSGLL + +L
Sbjct: 109 RPVAIQIFGNQIEPMVEAAQ-MAEAAGPDFIDINYGCPAKKVAGKGAGSGLLCQPDLMEK 167
Query: 372 ---GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL---GCPIEFIYKQGSGSGLLQRANI 425
V P +T T++ ++ + +D GC I+ + G + +
Sbjct: 168 ITDAVVKAVRLP--VTAKTRIGWDERSISILDTVRRLEGCGIQALSIHGRTRAQMYKGRA 225
Query: 426 LQSVITCMNEVSSLPI 441
S I EV+++PI
Sbjct: 226 DWSWIARAKEVATIPI 241
>gi|258624522|ref|ZP_05719466.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM603]
gi|258583219|gb|EEW08024.1| tRNA-dihydrouridine synthase B [Vibrio mimicus VM603]
Length = 331
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/353 (23%), Positives = 136/353 (38%), Gaps = 112/353 (31%)
Query: 243 DIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ 302
D++KI N + K L ++P+ V + PFR LC ++GA + SEM + +P
Sbjct: 8 DVLKIGNHQLKN-----NLIVAPMAGVTDRPFRELCLRYGAGMAVSEM------MSCNPA 56
Query: 303 EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
W K +++ SG
Sbjct: 57 LWKTAKSQN-----------------------------------------RMVHEGESG- 74
Query: 363 GLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR 422
+ VQ+ G++P ++ + Q E +D+N+GCP + + K+ +GS LL+
Sbjct: 75 -------IRSVQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLRH 126
Query: 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
++++S++ + ++P+T+KTRTG DN + D G + LHGRTR Y
Sbjct: 127 PDVIESILKTVVNAVNVPVTLKTRTGWDTDNKNCVSIAQLAEDCGIQALALHGRTRACMY 186
Query: 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 542
+A++D I K
Sbjct: 187 KGEAEYDSI--------------------------------------------------K 196
Query: 543 CAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
+ P+ NGDI S E L+ + + +MIGR A +PWIFQEI+
Sbjct: 197 AVKAAVSIPVIANGDIDSPEKARYVLEYTGA-DALMIGRPAQGRPWIFQEIQH 248
>gi|302545533|ref|ZP_07297875.1| putative tRNA-dihydrouridine synthase [Streptomyces hygroscopicus
ATCC 53653]
gi|302463151|gb|EFL26244.1| putative tRNA-dihydrouridine synthase [Streptomyces himastatinicus
ATCC 53653]
Length = 383
Score = 97.8 bits (242), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 129/338 (38%), Gaps = 106/338 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM L++ + LI +E
Sbjct: 14 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTRALVERDAKTMRLIHFDGTEKP 73
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
+QL G +P + K +++ ++ D +D+N GCP+ + ++G GS L + NL
Sbjct: 74 RSIQLYGVDPVTVGKAVRMIVDEDLADHIDLNFGCPVPKVTRKGGGSALPYKRNLL---- 129
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE 435
RA IL+ +T
Sbjct: 130 ----------------------------------------------RA-ILREAVTG--- 139
Query: 436 VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 140 AGPLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR-- 197
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN 555
+ +P+ P+ GN
Sbjct: 198 ---------LKETVPEI--------------------------------------PVLGN 210
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GDI S ED + ++ GV++GRG L +PW+F ++
Sbjct: 211 GDIWSAEDAVRMMDRT-GCDGVVVGRGCLGRPWLFGDL 247
>gi|90415235|ref|ZP_01223169.1| tRNA-dihydrouridine synthase B [gamma proteobacterium HTCC2207]
gi|90332558|gb|EAS47728.1| tRNA-dihydrouridine synthase B [marine gamma proteobacterium
HTCC2207]
Length = 348
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 129/334 (38%), Gaps = 107/334 (32%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
K L+P+ V +LPFR+LC++ GA + SEM A SS + I+ + VQ
Sbjct: 31 KTVLAPMAGVTDLPFRQLCREMGAGMVVSEMVAADPSTWSSRKSKLRIQFADEPAPRSVQ 90
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
+ G +P ++ + + +Q A + +D+N+GCP + + K+ +GS LLQ +L L
Sbjct: 91 IAGYDPLMMAEAARFNVQQGA-EIIDINMGCPAKKVLKKAAGSALLQHPDLVQDIL---- 145
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
+ VVD VDV
Sbjct: 146 -------------RAVVDSVDV-------------------------------------- 154
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+K RTG + N + D G + + +HGRTR R+ K+ ++D I + S
Sbjct: 155 PVTLKIRTGWDRQNRNAVSIAKIAEDAGIAALAIHGRTRACRFVKEVEYDTIANVVEALS 214
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ NGDI
Sbjct: 215 --------------------------------------------------IPVIANGDIT 224
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ E L+++ + + VMIGRGA PWIF +I
Sbjct: 225 TPEKALAVLEQTGA-AAVMIGRGAQGNPWIFNQI 257
>gi|372223186|ref|ZP_09501607.1| nifR3 family TIM-barrel protein [Mesoflavibacter zeaxanthinifaciens
S86]
Length = 330
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/334 (22%), Positives = 132/334 (39%), Gaps = 105/334 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ V + PFR LCK+ GAD+ +E + L++ + + + +E E G+Q+
Sbjct: 14 LLLAPMEDVSDPPFRALCKENGADVVYTEFISSEGLIRDAAKSVMKLDIYEKERPVGIQI 73
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
G + + ++E D +D+N GCP++ + + +G+G+L+ L
Sbjct: 74 FGAEMDSMLEAVDIVERSRP-DIIDINFGCPVKKVVSKNAGAGILRDIPL---------- 122
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ K T+ +++R N LP
Sbjct: 123 --MVKLTE-----------------------------AMVKRTN--------------LP 137
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
ITVKTR G D+ I + +D G I++HGRTR Q Y A+W+ I +
Sbjct: 138 ITVKTRLGWDSDSIKIVEVAERLQDVGIKAISIHGRTRVQMYKGDANWEPIAAV-----K 192
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N +H P++GNGD+ +
Sbjct: 193 NNPRMH-------------------------------------------IPVFGNGDVDT 209
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
E + ++ + G MIGR ++ PW F ++K
Sbjct: 210 PEAAVK-MRDDFGLDGAMIGRASIGNPWFFNQVK 242
>gi|326204271|ref|ZP_08194130.1| TIM-barrel protein, nifR3 family [Clostridium papyrosolvens DSM
2782]
gi|325985546|gb|EGD46383.1| TIM-barrel protein, nifR3 family [Clostridium papyrosolvens DSM
2782]
Length = 320
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 134/341 (39%), Gaps = 111/341 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + ++L+P+ V ++PFR LCK+ + +EM A + + L HE E
Sbjct: 6 VELKNNIFLAPMAGVTDMPFRILCKEQECGLVYTEMVSAKGMHYDDDKSNKLTLMHEIEK 65
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
VQ+ G++P ++ + T+ L A +D+N+GCP I K G GS L++
Sbjct: 66 PGAVQIFGSDPTIMAEVTEKLNASDAA-IIDINMGCPAPKITKNGEGSALMK-------- 116
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP QL+ E +I +
Sbjct: 117 ----NP-------QLIAE------------------------------------IIRAVA 129
Query: 435 EVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
S P+TVK R G D ++I+ + GAS + +HGRTREQ Y+ +ADWD I
Sbjct: 130 AASQKPVTVKIRKGW--DESLINAVEIARIAEENGASAVAVHGRTREQYYSGKADWDIIR 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + S P+
Sbjct: 188 RVKEAVS--------------------------------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ ++ + L+++ +M+GRGA PWIF++I
Sbjct: 198 IGNGDVTGPKEARKLLEET-KCDAIMVGRGAQGNPWIFKKI 237
>gi|291561472|emb|CBL40271.1| tRNA-U20-dihydrouridine synthase [butyrate-producing bacterium
SS3/4]
Length = 319
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 138/341 (40%), Gaps = 111/341 (32%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++ + + L+P+ V ++P+R LC++ GA + C EM A + L K +++
Sbjct: 8 VELENNVILAPMAGVTDMPYRILCREQGAGLVCMEMVSAKAI---------LYKNKNTQE 58
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
L V +R +Q
Sbjct: 59 LLKVD----------------------------------------------ERERPVSLQ 72
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G++P ++ LE+ D D+N+GCP+ I K G GS L++ +++ ++T +
Sbjct: 73 LFGSDPDIVADIAASLEDG-PYDIFDINMGCPVPKIVKNGEGSALMRNPKLVEEILTKLV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNF-MPKFRD-WGASLITLHGRTREQRYTKQADWDYIE 492
+ P+TVK R G D+ I+ + K + G + + +HGRTREQ Y+ +ADW+ I
Sbjct: 132 KAVKKPVTVKFRKGF--DDTCINAVEIAKIAESAGVAAVAVHGRTREQYYSGKADWNIIR 189
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ ++K ++ P+
Sbjct: 190 E----------------------------------------------VKKAVKI----PV 199
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGD+ + +D + L + G+M+ RGA PWIF++I
Sbjct: 200 IGNGDVFTPQD-AKRLVEETGCDGIMVARGAKGNPWIFKQI 239
>gi|429728506|ref|ZP_19263226.1| TIM-barrel protein, nifR3 family [Peptostreptococcus anaerobius VPI
4330]
gi|429149301|gb|EKX92281.1| TIM-barrel protein, nifR3 family [Peptostreptococcus anaerobius VPI
4330]
Length = 319
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 135/341 (39%), Gaps = 107/341 (31%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K + + +++L+P+ V +LPFR +CK+ G + + TE++ +
Sbjct: 4 KDFEVKNEVFLAPMAGVTDLPFRLICKELGCGL------LYTEMINAK------------ 45
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
LC ++ K +L+E+ V
Sbjct: 46 ------ALCYDDQNT-KKMLNILDEEHPV------------------------------A 68
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G+ P + + ++L + + +D+N+GCP + K G GS L++ + V+T
Sbjct: 69 VQIFGSEPEYMGRAAKILNDY-PNEILDINMGCPAPKVIKNGDGSALMKNPKLAADVLTS 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + S+ P+T+K R G D+ D G I +HGRTREQ Y+ +ADWD I
Sbjct: 128 VVKNSNKPVTLKIRKGWDDDSVNAVEIAKIAEDCGIDAIAVHGRTREQFYSGKADWDIIG 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ S P+
Sbjct: 188 QVKNAVS--------------------------------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+S ED + +++ + VMIGRGA PWIF+ I
Sbjct: 198 IGNGDIVSVEDVVK-IREMTNCDAVMIGRGAQGNPWIFKRI 237
>gi|303237786|ref|ZP_07324344.1| TIM-barrel protein, nifR3 family [Prevotella disiens FB035-09AN]
gi|302482011|gb|EFL45048.1| TIM-barrel protein, nifR3 family [Prevotella disiens FB035-09AN]
Length = 321
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 137/332 (41%), Gaps = 105/332 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L+L+P+ V ++ FR++CK++GA + V TE + + A+I+ +S
Sbjct: 13 LFLAPMEDVTDIGFRKMCKRFGAAM------VYTEFVSAD----AVIRSIKS-------- 54
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
L K EE+ P+ G+Q+ G +
Sbjct: 55 ------TLNKIVIDDEER------------PV-------------------GIQIYGKDV 77
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
+ + +++EE + D +D+N GCP++ + +G+GSG+L+ +L + + + P
Sbjct: 78 ASMVEAAKIVEE-VHPDVIDINFGCPVKKVANKGAGSGMLRNIPLLLEITREVVKAVKTP 136
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+TVKTR G +N II + + ++ G +T+HGRTR Q YT ADW I + +
Sbjct: 137 VTVKTRLGWDDNNLIITDLAEQLQNCGIQALTIHGRTRAQMYTGNADWTLIGEV-----K 191
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+N IH P+ GNGDI +
Sbjct: 192 NNPRIH-------------------------------------------IPIIGNGDIEN 208
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D + K + VMIGR PW+F E
Sbjct: 209 IADAHKHFDKY-GVDAVMIGRATFGCPWLFSE 239
>gi|289771765|ref|ZP_06531143.1| dihydrouridine synthase [Streptomyces lividans TK24]
gi|289701964|gb|EFD69393.1| dihydrouridine synthase [Streptomyces lividans TK24]
Length = 406
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 69
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 70 -----------KTMQL-----------------IHFDATETPRS----------IQLYGV 91
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++ +
Sbjct: 92 DPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIVREAVTGAG 151
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R G+ D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 152 DLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHYGGTADWDAIAR---- 207
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 208 -------LKEHVPEI--------------------------------------PVLGNGD 222
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 223 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 257
>gi|402570722|ref|YP_006620065.1| tRNA-U20-dihydrouridine synthase [Desulfosporosinus meridiei DSM
13257]
gi|402251919|gb|AFQ42194.1| tRNA-U20-dihydrouridine synthase [Desulfosporosinus meridiei DSM
13257]
Length = 318
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 92/218 (42%), Gaps = 52/218 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL GN P + K +L E + +D+N+GCP I K G GS LL+ Q++ +
Sbjct: 69 VQLFGNEPETMAKAAELAVE-CNANIIDINMGCPAPKIIKNGEGSALLKDLPRAQAIASA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ ++P+TVK R G + + G +IT+H RTREQ Y+ ADW++I
Sbjct: 128 VVRAVNIPVTVKIRLGWNDREIVALELAKGLESVGVQMITVHARTREQFYSGHADWEWIR 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + S P+
Sbjct: 188 RVKKAVS--------------------------------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
GNGD+L ED ++++ GVMIGRGAL PW+
Sbjct: 198 IGNGDVLMPEDAGRLIEQT-ECDGVMIGRGALGNPWLI 234
>gi|398786143|ref|ZP_10548923.1| TIM-barrel protein, nifR3 family [Streptomyces auratus AGR0001]
gi|396993995|gb|EJJ05051.1| TIM-barrel protein, nifR3 family [Streptomyces auratus AGR0001]
Length = 375
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 12 QPPVVLAPMAGITNAPFRTLCREFSAGKGLFVSEMITTR----------ALVERNE---- 57
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 58 --------------KTMQL-----------------IHFDETEKPRS----------IQL 76
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L+S++ +
Sbjct: 77 YGVDPDTVGKAARMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRSILREAVA 136
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 137 NAGALPVTMKMRKGIDDDHLTYLDAGRIAVEEGITAIALHGRTASQHYGGTADWDAIAR- 195
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 196 ----------LKEHVPEI--------------------------------------PVLG 207
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 208 NGDIWSADDAQRMMRET-GCDGVVVGRGCLGRPWLFGDL 245
>gi|315604759|ref|ZP_07879822.1| NifR3/Smm1 family transcriptional regulator [Actinomyces sp. oral
taxon 180 str. F0310]
gi|315313771|gb|EFU61825.1| NifR3/Smm1 family transcriptional regulator [Actinomyces sp. oral
taxon 180 str. F0310]
Length = 423
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/353 (22%), Positives = 143/353 (40%), Gaps = 89/353 (25%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V + PFRRLC+ G E + L + WA ++ G +
Sbjct: 10 VVLAPMAGVTDAPFRRLCRIMG------ESGLPGALRPAGLPAWA------ADASPGADV 57
Query: 321 CGN-NPYVLTKCTQLLEEQMAVDFVDVNLGCPI-EFIYKQGSGSGLLQRANLF------- 371
+P T ++A+ VD G + E + + G + ++
Sbjct: 58 SSQMDPEAGTA------RRVAIPRVDAPAGLYVTEMVTSRALVEGNERTLDMVRPDPAER 111
Query: 372 --GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR----ANI 425
+QL G +P V+ + +L E+ + D VD+N GCP+ + K+G G+ L + ++
Sbjct: 112 VRSLQLYGVDPAVMARAATMLVERDLTDHVDLNFGCPVPKVTKKGGGAALPWKRDLFVDL 171
Query: 426 LQSVITCMNEVSS-----LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
L SV+ + +P+TVK R GI + + + GA+ +TLH RT+ Q
Sbjct: 172 LDSVVRACRKAGERAGREIPVTVKIRIGIDSSHETATDAALSAQRLGAAALTLHARTQTQ 231
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
Y +A W++I + +L
Sbjct: 232 HYAGKAQWEHIARLKELLD----------------------------------------- 250
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P++GNGD+ D + L+++ G+ +GRGA +PWIF++I
Sbjct: 251 ---------IPVFGNGDVFEGADALDMLERT-GCDGISVGRGAQGRPWIFRDI 293
>gi|21220959|ref|NP_626738.1| hypothetical protein SCO2497 [Streptomyces coelicolor A3(2)]
gi|6580664|emb|CAB63312.1| conserved hypothetical protein SCC82.03c [Streptomyces coelicolor
A3(2)]
Length = 406
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 135/336 (40%), Gaps = 108/336 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 27 VVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE------- 69
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
K QL I F + S +QL G
Sbjct: 70 -----------KTMQL-----------------IHFDATETPRS----------IQLYGV 91
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMNEVS 437
+P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L++++ +
Sbjct: 92 DPVTVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRAIVREAVTGAG 151
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
LP+T+K R G+ D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 152 DLPVTMKMRKGLDDDHLTYLDAGRIAVEEGVTAIALHGRTTAQHYGGTADWDAIAR---- 207
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+ +P+ P+ GNGD
Sbjct: 208 -------LKEHVPEI--------------------------------------PVLGNGD 222
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S ED ++++ GV++GRG L +PW+F ++
Sbjct: 223 IWSAEDALRMVRET-GCDGVVVGRGCLGRPWLFADL 257
>gi|402311701|ref|ZP_10830637.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium ICM7]
gi|400371225|gb|EJP24189.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium ICM7]
Length = 319
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 130/340 (38%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ +G L L P+ V +LPFR LCK+ GA + +EM A + + L+K + E
Sbjct: 10 INIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTEMVSAKAIYFKNKNTEPLMKIDKGEH 69
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+QL G++P ++ + +EE+ D D N+GCP+ I G GS L++
Sbjct: 70 PIALQLFGSDPDIIAQMAASIEER-DFDIFDFNMGCPVPKIVNNGEGSALMK-------- 120
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP +L+EE IL ++ +
Sbjct: 121 ----NP-------KLVEE--------------------------------ILTKLVKSVK 137
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+T+K R G + DN G S + +H RTREQ Y+ +ADW I+
Sbjct: 138 K----PVTLKIRKGFNDDNINAVEIAKIAEASGVSAVAIHARTREQYYSGKADWSIIKAV 193
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ L P + G
Sbjct: 194 K------------------------------------------------SNLGIP--VIG 203
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGD++ + E + + G+MI R A PWIF+EI+
Sbjct: 204 NGDVVDGKSAKE-MYEYTGCDGIMIARAARGNPWIFKEIR 242
>gi|304440037|ref|ZP_07399930.1| tRNA-dihydrouridine synthase B [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371529|gb|EFM25142.1| tRNA-dihydrouridine synthase B [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 306
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 95/199 (47%), Gaps = 52/199 (26%)
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
++++N+GCP I K SGS LL + +I + + +PI++K R GI+ N +
Sbjct: 83 YININMGCPAPKIVKNFSGSYLLNDPEKCKRLIYALKSSTDIPISIKIRRGINGGNQGL- 141
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517
K A++ + GA
Sbjct: 142 -----------------------------------KVAKVAEEE--------------GA 152
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577
S++ +HGRT+E+ Y+ ADW++IE+ A + P+ GNGDI Y+ + E K S +SGV
Sbjct: 153 SMVIVHGRTKEEYYSGIADWNFIEEVATSLN-IPVIGNGDITDYDSFLERTKDS-KVSGV 210
Query: 578 MIGRGALIKPWIFQEIKEK 596
IGRGA+ P+IF+EIK K
Sbjct: 211 AIGRGAIGNPFIFKEIKSK 229
>gi|456823687|gb|EMF72124.1| TIM-barrel protein, nifR3 family [Leptospira interrogans serovar
Canicola str. LT1962]
Length = 329
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GK+ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + R++SE+
Sbjct: 11 GKISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMF-RYKSEE---- 65
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 66 -------------------------------RPITF-------------------QVFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
V+ + ++++E + D +D+N+GC + +G+G+GLL+R + +I + + +
Sbjct: 76 RLEVIAEAAEIIQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G + + G +T+HGRT+E YT ADWD I +
Sbjct: 135 IPVTAKIRIGWDSTSRNYLEVSKILEESGVDALTVHGRTKEMAYTGFADWDAIGEIK--- 191
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
++ +P F GNGDI
Sbjct: 192 ------VNRKIPIF-----------------------------------------GNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K + GV+IGR A+ PWIF +K+++L
Sbjct: 205 KSFQEANFKIDKY-LLDGVLIGRNAIGNPWIFSGVKKEEL 243
>gi|417761362|ref|ZP_12409374.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000624]
gi|417776533|ref|ZP_12424369.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000621]
gi|418670062|ref|ZP_13231436.1| TIM-barrel protein, nifR3 family [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
gi|418672465|ref|ZP_13233804.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000623]
gi|421123143|ref|ZP_15583425.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str. Brem
329]
gi|409942776|gb|EKN88381.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000624]
gi|410343887|gb|EKO95082.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str. Brem
329]
gi|410573675|gb|EKQ36721.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000621]
gi|410580593|gb|EKQ48415.1| TIM-barrel protein, nifR3 family [Leptospira interrogans str.
2002000623]
gi|410754352|gb|EKR16007.1| TIM-barrel protein, nifR3 family [Leptospira interrogans serovar
Pyrogenes str. 2006006960]
Length = 329
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 138/340 (40%), Gaps = 107/340 (31%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GK+ LSP+ + + P RR+C+K+GA + +E EL+ +P+ + R++SE+
Sbjct: 11 GKISLSPMAGISDSPTRRICRKFGAAFSYTEFVNTDELVHRAPKALKMF-RYKSEE---- 65
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
PI F Q+ GN
Sbjct: 66 -------------------------------RPITF-------------------QIFGN 75
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
V+ + ++++E + D +D+N+GC + +G+G+GLL+R + +I + + +
Sbjct: 76 RLEVIAEAAEIVQE-LKPDIIDLNMGCSTRKVSLRGAGAGLLRRPLLAGKIIEAIKKRVN 134
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
+P+T K R G + + G +T+HGRT+E YT ADWD I +
Sbjct: 135 IPVTAKIRIGWDSTSRNYLEVSKILEESGVDALTVHGRTKEMAYTGFADWDAIGEIK--- 191
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
++ +P F GNGDI
Sbjct: 192 ------VNRKIPIF-----------------------------------------GNGDI 204
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598
S+++ + K + GV+IGR A+ PWIF +K+++L
Sbjct: 205 KSFQEANFKIDKY-LLDGVLIGRNAIGNPWIFSGVKKEEL 243
>gi|435852932|ref|YP_007314251.1| putative TIM-barrel protein, nifR3 family [Halobacteroides halobius
DSM 5150]
gi|433669343|gb|AGB40158.1| putative TIM-barrel protein, nifR3 family [Halobacteroides halobius
DSM 5150]
Length = 323
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL GN+P L + + + E + +D+N+GCP I K G GS L++ +L ++
Sbjct: 70 LQLFGNDPQTLAQAAKRVVEISNPEIIDLNVGCPTPKIVKNGYGSALMKEPYLLGEIVKA 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
M++ +P+T+K RTG + ++ GA+ I +HGRTREQ Y QADW+ I+
Sbjct: 130 MDKAVEIPVTIKIRTGWDGERINACQIAKIAQENGAAAIGVHGRTREQFYQGQADWEIIK 189
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ + S P+
Sbjct: 190 EVKETVS--------------------------------------------------IPV 199
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
GNGDI ED E + ++ VMI RGA PWIF
Sbjct: 200 IGNGDIFKPEDAIEMIDQT-GCDAVMIARGAQGNPWIF 236
>gi|363900435|ref|ZP_09326940.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|395209173|ref|ZP_10398338.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
gi|361956309|gb|EHL09627.1| hypothetical protein HMPREF9625_01600 [Oribacterium sp. ACB1]
gi|394705774|gb|EJF13300.1| TIM-barrel protein, nifR3 family [Oribacterium sp. ACB8]
Length = 373
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/344 (21%), Positives = 132/344 (38%), Gaps = 114/344 (33%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
K+ G + ++P+ V +LP+R LCK+ G ++
Sbjct: 63 KLVLPGNILMAPMAGVTDLPYRILCKEMGVSLS--------------------------- 95
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG- 372
CT+++ + +Y + LL++ G
Sbjct: 96 -----------------CTEMVSAK--------------AILYGNKNTDSLLEKGEEPGF 124
Query: 373 --VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQL G++P ++ + + +E D +D+N+GCP+ + + GS L++ +++ ++
Sbjct: 125 RAVQLFGSDPEIMAEMAKRVEPDF--DIIDINMGCPVPKVVRNQEGSALMENLPLVEKIL 182
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ M + P+TVK R G + + +F+ G S I +HGRTREQ Y +A+WD+
Sbjct: 183 SAMVKAVDKPVTVKCRLGFTDSHINVLDFVKVAEGAGVSAIVVHGRTREQYYRGKANWDW 242
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
I K +
Sbjct: 243 IRKAKEAVQ--------------------------------------------------I 252
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
PL+GNGDI + ED L S + G+ +GRG P++ + I+
Sbjct: 253 PLFGNGDIFTEEDAMAML-LSTGVDGISLGRGVQGNPFLIRRIR 295
>gi|354585826|ref|ZP_09004657.1| TIM-barrel protein, nifR3 family [Paenibacillus lactis 154]
gi|353184151|gb|EHB49679.1| TIM-barrel protein, nifR3 family [Paenibacillus lactis 154]
Length = 341
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 106/336 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + ++ L+P+ V N FR + K++G + C+EM ++
Sbjct: 7 IEMKNQVVLAPMAGVCNPAFRLIAKEFGTGLVCAEMVSGKAIVH---------------- 50
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
GN + ++L FVD +R +Q
Sbjct: 51 -------GNK-----RTQEML-------FVD--------------------EREKPLSLQ 71
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+ G + L + +++++Q D +D+N+GCP + K +G+ L +N + ++ +
Sbjct: 72 IFGGDRDSLVEAAKVVDQQTNADIIDINMGCPAPKVTKMDAGARWLLDSNKIYEMVAAVV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ + P+TVK RTG W + I + +
Sbjct: 132 DAVNKPVTVKMRTG-----------------WDSEHI------------------FAVEN 156
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
AQ R G +++HGRTREQ YT ADW+ I + + S P+ G
Sbjct: 157 AQAVERA--------------GGQAVSVHGRTREQLYTGHADWNIIRQVKEAVS-IPVIG 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
NGD+++ ED L + GVMIGRGAL PW+
Sbjct: 202 NGDVVTPEDAKRMLDTT-GCDGVMIGRGALGNPWML 236
>gi|373471294|ref|ZP_09562352.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
gi|371760580|gb|EHO49261.1| TIM-barrel protein, nifR3 family [Lachnospiraceae bacterium oral
taxon 082 str. F0431]
Length = 334
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/348 (23%), Positives = 138/348 (39%), Gaps = 107/348 (30%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+KN + I+ +G L L P+ V +LPFR LCK+ GA + + TE++ +
Sbjct: 16 LKNFKIGNINIEGGLCLGPMAGVSDLPFRHLCKEMGASL------LVTEMVSAKAI---- 65
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
Y K T+ L M +D +
Sbjct: 66 -------------------YFKNKNTEPL---MKID-----------------------K 80
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+ +QL G++P ++ + +E++ D D N+GCP+ I G GS L++ ++
Sbjct: 81 AEHPIALQLFGSDPDIIAEMAASIEDR-DFDIFDFNMGCPVPKIVNNGEGSALMKNPKLV 139
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
+ +++ + + P+TVK R G ++DN G S + +HGRTREQ Y+ +A
Sbjct: 140 EEILSKLVKSVKKPVTVKIRRGFNEDNINAVEIAKIAECAGVSAVAVHGRTREQYYSGKA 199
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
DW+ I RD ++L
Sbjct: 200 DWNII---------------------RDVKSAL--------------------------- 211
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGD+ E + + + G+MI R A PWIF+EI+
Sbjct: 212 --SIPVIGNGDVTDGES-AKRMYEYTGCDGIMIARAARGNPWIFREIR 256
>gi|359420305|ref|ZP_09212243.1| putative tRNA-dihydrouridine synthase [Gordonia araii NBRC 100433]
gi|358243662|dbj|GAB10312.1| putative tRNA-dihydrouridine synthase [Gordonia araii NBRC 100433]
Length = 356
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 100/225 (44%), Gaps = 53/225 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G +P L + +++ + D +D+NLGCP+ + K G G+ L + +L ++
Sbjct: 55 MQLYGVDPDTLGEAVRIIAGEGWADHIDLNLGCPVPKVTKLGGGAALPYKRWLLARIVDA 114
Query: 433 M---NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
M E +P+T+K R GI ++ F D GR E
Sbjct: 115 MVAAAEPYGVPVTLKFRKGIDDEHL-------TFLD--------TGRIAE---------- 149
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
D G + + LH RT QRY+ QADW+ I + Q +
Sbjct: 150 ------------------------DGGCAAVALHARTASQRYSGQADWEAIAQLKQAVTT 185
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P+ GNGDI S +D + ++ GV++GRG L +PW+F E+
Sbjct: 186 IPVLGNGDIFSADDAVTMMART-GCDGVVVGRGCLGRPWLFAELA 229
>gi|196230050|ref|ZP_03128913.1| dihydrouridine synthase DuS [Chthoniobacter flavus Ellin428]
gi|196225647|gb|EDY20154.1| dihydrouridine synthase DuS [Chthoniobacter flavus Ellin428]
Length = 330
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 53/224 (23%)
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
Q+ GN+ L + + LE+ V +D+NLGCP+ +Y++ +G GLL+ + S++ +
Sbjct: 55 QMMGNDIPSLVRAAKELEQHPVAA-IDLNLGCPVPVVYRKCAGGGLLRDPERVDSILGAL 113
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E ++P TVKTR G D ++ +P + L+T+HGRT ++ Y + ++YI +
Sbjct: 114 REAVTIPFTVKTRIGF-DDPSVFEQMLPIYARHSLDLLTVHGRTVKEMYRSEVHYEYIAR 172
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
A P P+
Sbjct: 173 --------------------------------------------------AVAAMPCPVV 182
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
NG++ S E L + G+MIGR A+ PWIFQ+I++ +
Sbjct: 183 ANGNVSSVHSAEEVLNLT-GARGLMIGRAAIRNPWIFQQIRQHR 225
>gi|163845808|ref|YP_001633852.1| NifR3 family TIM-barrel protein [Chloroflexus aurantiacus J-10-fl]
gi|222523518|ref|YP_002567988.1| nifR3 family TIM-barrel protein [Chloroflexus sp. Y-400-fl]
gi|163667097|gb|ABY33463.1| TIM-barrel protein, nifR3 family [Chloroflexus aurantiacus J-10-fl]
gi|222447397|gb|ACM51663.1| TIM-barrel protein, nifR3 family [Chloroflexus sp. Y-400-fl]
Length = 350
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 52/225 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ GN+P ++ +++E Q+ D +D+N GCP + G GS LL+ ++ ++
Sbjct: 86 MQISGNDPDLVANAARVVE-QLGADIIDINCGCPSPKVTGGGHGSALLRDLPKMERLLRA 144
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ E +P+T+K R G W + ++IE
Sbjct: 145 VREAVQIPVTLKFRAG-----------------W-----------------DEQSLNFIE 170
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ G S + LH RTREQ Y QADW + Q S P+
Sbjct: 171 AGK---------------RAEAAGVSALALHPRTREQGYKGQADWSRVAALKQAVS-IPV 214
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
G+GD+ S D L+ S GVMIGRGA+ PWIF++I + +
Sbjct: 215 IGSGDVTSAHDALIRLRDS-GADGVMIGRGAMANPWIFRQIADLR 258
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/270 (22%), Positives = 102/270 (37%), Gaps = 63/270 (23%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESE 313
I + + L+P+ V + FRR+ + G + +EM A + + + L+ E
Sbjct: 22 IRIEPNIILAPMAGVTDSIFRRMILRLGGCGLVSTEMTNAASVSPKALRRHRLLDYLPEE 81
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+Q+ GN+P ++ +++E Q+ D +D+N GCP + G GS LL+
Sbjct: 82 RPLTMQISGNDPDLVANAARVVE-QLGADIIDINCGCPSPKVTGGGHGSALLRD------ 134
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
L K +LL +
Sbjct: 135 ---------LPKMERLLR----------------------------------------AV 145
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
E +P+T+K R G + + + G S + LH RTREQ Y QADW +
Sbjct: 146 REAVQIPVTLKFRAGWDEQSLNFIEAGKRAEAAGVSALALHPRTREQGYKGQADWSRVAA 205
Query: 494 CAQ------LCSRDNNIIHNFMPKFRDWGA 517
Q + S D H+ + + RD GA
Sbjct: 206 LKQAVSIPVIGSGDVTSAHDALIRLRDSGA 235
>gi|415726563|ref|ZP_11470902.1| NifR3-like protein [Gardnerella vaginalis 00703Dmash]
gi|388063173|gb|EIK85765.1| NifR3-like protein [Gardnerella vaginalis 00703Dmash]
Length = 384
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 138/354 (38%), Gaps = 110/354 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IK + K+ + LSP+ + N PFR +C+++G D + +EM A
Sbjct: 3 FSIKPVDLGKVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITAR--------- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
AL+ R NP L C E++
Sbjct: 54 -ALVAR--------------NPKALRLCRFAPSEKVR----------------------- 75
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+QL G NP ++ + +++ ++ + D VD+N GCP+ + ++G GS L +
Sbjct: 76 --------SLQLYGVNPSIVEQAARIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKT 127
Query: 424 NILQSV---ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
++LQ + + + E + +P+T K R GI +++ ++ G + +TLH RT +
Sbjct: 128 DLLQEILHRVVSVCEPAGIPVTAKFRVGIDENHETFMQAGHIAQEEGCAAVTLHARTTSE 187
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
Y +DW I + + NI
Sbjct: 188 YYGGHSDWQRIGELVEAL----NI------------------------------------ 207
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI +D K++ +GV IGRG +PWIF +I+
Sbjct: 208 ----------PVFGNGDIWGAQDALAMFKET-GCAGVAIGRGCQGRPWIFADIR 250
>gi|441146659|ref|ZP_20964235.1| putative dihydrouridine synthase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440620547|gb|ELQ83575.1| putative dihydrouridine synthase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 375
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 12 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 57
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 58 --------------KTMQL-----------------IHFDETEKPRS----------IQL 76
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + ++L+S++ ++
Sbjct: 77 YGVDPDTVGKAVRMIAEEDLADHIDLNFGCPVPKVTRKGGGSALPYKRHLLRSILREAVS 136
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADWD I +
Sbjct: 137 NAGELPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWDAIAR- 195
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 196 ----------LKEAVPEI--------------------------------------PVLG 207
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 208 NGDIWSADDALRMVRET-GCDGVVVGRGCLGRPWLFGDL 245
>gi|317968889|ref|ZP_07970279.1| nitrogen regulation protein NifR3 family protein [Synechococcus sp.
CB0205]
Length = 347
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 100/223 (44%), Gaps = 52/223 (23%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
GVQL + P + + E +D+N+GCP++ I K+G GSGL++ ++ ++
Sbjct: 93 IGVQLFDHRPQSMADAARRAEAAGAF-LIDINMGCPVKKIAKKGGGSGLIREPDLASRIV 151
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
++ S+PITVKTR G W S D D
Sbjct: 152 ETVSAAVSIPITVKTRLG-----------------WCGS-----------------DLDP 177
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550
+ C QL S GA L+TLHGRTREQ + ADW I + +
Sbjct: 178 VAWCRQLESA---------------GAQLLTLHGRTREQGFKGSADWQAIAAFKRALA-I 221
Query: 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGDI S D L+++ GVM+GRG++ PW+ +I
Sbjct: 222 PVIANGDINSAADALRCLEQT-GADGVMVGRGSMGAPWLVGQI 263
Score = 65.5 bits (158), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 102/259 (39%), Gaps = 67/259 (25%)
Query: 238 PVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATEL 296
P L T+ I++ ++ + + SPL V + FR L ++W D + +EM AT L
Sbjct: 16 PALTTEAIQLSGQGTPRL-LRCRALQSPLAGVSDRIFRGLVRRWAPDALLFTEMVNATSL 74
Query: 297 -LKSSPQ---EWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPI 352
L Q E AL + GVQL + P + + E A +D+N+GCP+
Sbjct: 75 ELGHGLQKVEELAL-----EQGPIGVQLFDHRPQSMADAARRAEAAGAF-LIDINMGCPV 128
Query: 353 EFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412
+ I K+G GSGL++ +L +V+ V + P
Sbjct: 129 KKIAKKGGGSGLIREPDL---------------------ASRIVETVSAAVSIP------ 161
Query: 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472
ITVKTR G + + + GA L+T
Sbjct: 162 ----------------------------ITVKTRLGWCGSDLDPVAWCRQLESAGAQLLT 193
Query: 473 LHGRTREQRYTKQADWDYI 491
LHGRTREQ + ADW I
Sbjct: 194 LHGRTREQGFKGSADWQAI 212
>gi|419539620|ref|ZP_14078922.1| tRNA-dihydrouridine synthase B [Campylobacter coli 90-3]
gi|419539957|ref|ZP_14079200.1| tRNA-dihydrouridine synthase B [Campylobacter coli Z163]
gi|419549175|ref|ZP_14087780.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2685]
gi|419568098|ref|ZP_14105242.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1417]
gi|419585978|ref|ZP_14122006.1| tRNA-dihydrouridine synthase B [Campylobacter coli 202/04]
gi|419590613|ref|ZP_14125979.1| tRNA-dihydrouridine synthase B [Campylobacter coli 37/05]
gi|419603366|ref|ZP_14137920.1| tRNA-dihydrouridine synthase B [Campylobacter coli 151-9]
gi|419616101|ref|ZP_14149754.1| tRNA-dihydrouridine synthase B [Campylobacter coli Z156]
gi|380514333|gb|EIA40601.1| tRNA-dihydrouridine synthase B [Campylobacter coli 90-3]
gi|380518000|gb|EIA44102.1| tRNA-dihydrouridine synthase B [Campylobacter coli Z163]
gi|380526568|gb|EIA52024.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2685]
gi|380546360|gb|EIA70311.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1417]
gi|380561056|gb|EIA84034.1| tRNA-dihydrouridine synthase B [Campylobacter coli 202/04]
gi|380570547|gb|EIA92968.1| tRNA-dihydrouridine synthase B [Campylobacter coli 37/05]
gi|380578924|gb|EIB00739.1| tRNA-dihydrouridine synthase B [Campylobacter coli 151-9]
gi|380596201|gb|EIB16903.1| tRNA-dihydrouridine synthase B [Campylobacter coli Z156]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + +S++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + + G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYEITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKNVD 240
>gi|294793386|ref|ZP_06758531.1| tRNA-dihydrouridine synthase [Veillonella sp. 6_1_27]
gi|294455817|gb|EFG24182.1| tRNA-dihydrouridine synthase [Veillonella sp. 6_1_27]
Length = 328
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 52/221 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ G+NP + +++ + D VD+N+GCP++ + G GS L++ ++ V
Sbjct: 74 MQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEA 132
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
E +P+TVK R G D+ + +F + G + I +HGRT+EQ Y+ ADW YI+
Sbjct: 133 AVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSGHADWSYIK 192
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ S P+
Sbjct: 193 AVKEAVS--------------------------------------------------VPV 202
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+ ED + L ++ VMIGRGA PWIF I
Sbjct: 203 LGNGDIVEPEDAKQMLDET-GCDAVMIGRGAQGNPWIFDRI 242
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
KID G+ L+P+ V ++ +R L KK GA + C+EM A + + + L++ E+E
Sbjct: 12 KID--GQAILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIEEAE 69
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+Q+ G+NP + +++ + A D VD+N+GCP++ + G GS L++ +L
Sbjct: 70 RPVSMQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVTSGDGSALMKNPDL 125
>gi|419563763|ref|ZP_14101156.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1098]
gi|419575551|ref|ZP_14112237.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1909]
gi|419580240|ref|ZP_14116612.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1948]
gi|419581007|ref|ZP_14117321.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1957]
gi|419606163|ref|ZP_14140543.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 9860]
gi|380543443|gb|EIA67637.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1098]
gi|380553315|gb|EIA76836.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1909]
gi|380555273|gb|EIA78609.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1948]
gi|380560091|gb|EIA83197.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1957]
gi|380587367|gb|EIB08573.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 9860]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + +S++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRT++Q Y+ +AD+D I
Sbjct: 161 DFVSIHGRTKKQLYSGKADYDSIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + + G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYEITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKNVD 240
>gi|282850019|ref|ZP_06259401.1| TIM-barrel protein, nifR3 family [Veillonella parvula ATCC 17745]
gi|282580208|gb|EFB85609.1| TIM-barrel protein, nifR3 family [Veillonella parvula ATCC 17745]
Length = 328
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 95/221 (42%), Gaps = 52/221 (23%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ G+NP + +++ + D VD+N+GCP++ + G GS L++ ++ V
Sbjct: 74 MQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVTSGDGSALMKNPDLAARVAEA 132
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
E +P+TVK R G D+ + +F + G + I +HGRT+EQ Y+ ADW YI+
Sbjct: 133 AVEAVDVPVTVKMRIGWDSDSINVVDFAKRIESTGVAAIAVHGRTKEQMYSGHADWSYIK 192
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ S P+
Sbjct: 193 AVKEAVS--------------------------------------------------VPV 202
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+ ED + L ++ VMIGRGA PWIF I
Sbjct: 203 LGNGDIVEPEDAKQMLDET-GCDAVMIGRGAQGNPWIFDRI 242
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
Query: 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
KID G+ L+P+ V ++ +R L KK GA + C+EM A + + + L++ E+E
Sbjct: 12 KID--GQAILAPMAGVSDIAYRLLAKKHGAALVCTEMVSAMGIKYKNERTHELLRIEEAE 69
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+Q+ G+NP + +++ + A D VD+N+GCP++ + G GS L++ +L
Sbjct: 70 RPVSMQIFGSNPEAIALGAKVVADAGA-DIVDINMGCPVKKVVTSGDGSALMKNPDL 125
>gi|86153597|ref|ZP_01071800.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|419669748|ref|ZP_14199517.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1997-11]
gi|85842558|gb|EAQ59770.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|380646348|gb|EIB63319.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFHEIKSGKSVD 240
>gi|419535940|ref|ZP_14075429.1| tRNA-dihydrouridine synthase B [Campylobacter coli 111-3]
gi|380519555|gb|EIA45629.1| tRNA-dihydrouridine synthase B [Campylobacter coli 111-3]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + +S++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + + G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYEITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSSKNVD 240
>gi|225351461|ref|ZP_03742484.1| hypothetical protein BIFPSEUDO_03056 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157805|gb|EEG71088.1| hypothetical protein BIFPSEUDO_03056 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 409
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 144/379 (37%), Gaps = 115/379 (30%)
Query: 225 DDVIKVQEETKSGPVLD--TDIIK------IKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
D ++ EE+ VLD TD ++ +K + + + + LSP+ V N PFR
Sbjct: 3 DSIVTAYEESD---VLDPRTDAVRPSVPPVMKPVDLGPVHVETPVVLSPMAGVTNWPFRV 59
Query: 277 LCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLL 335
+C+ +G D + +EM A L+ +P+ L SE + +QL G NP ++ + +++
Sbjct: 60 ICESYGPDGLYVAEMITARALVARNPKALRLCHFAPSEKIRSLQLYGVNPAIVEQAAKIV 119
Query: 336 EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV 395
++ D VD+N GCP+ + ++G GS L + +LF
Sbjct: 120 IDENMADHVDLNFGCPVPKVTRRGGGSALPWKTDLF------------------------ 155
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455
I+Q V+ + +++P+T K R GI ++
Sbjct: 156 ---------------------------REIIQRVVKVCD-AANVPVTAKIRVGIDHEHET 187
Query: 456 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDW 515
++ G +TLH RT + Y +DW I + +
Sbjct: 188 FLEAGHIAQEEGCKAVTLHARTTAEYYGGHSDWSRIGELVEALD---------------- 231
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
P++GNGDI D + ++ +
Sbjct: 232 ----------------------------------IPVFGNGDIWGANDALAMVAET-GCA 256
Query: 576 GVMIGRGALIKPWIFQEIK 594
GV IGRG +PW+F +IK
Sbjct: 257 GVAIGRGCQGRPWLFADIK 275
>gi|86151249|ref|ZP_01069464.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
260.94]
gi|315123725|ref|YP_004065729.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841596|gb|EAQ58843.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
260.94]
gi|315017447|gb|ADT65540.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ + D++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKTDYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|419694685|ref|ZP_14222641.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|380669767|gb|EIB85038.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 9872]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.7 bits (213), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVSIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKNVD 240
>gi|419645327|ref|ZP_14176878.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|419668153|ref|ZP_14198075.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1997-10]
gi|380620509|gb|EIB39393.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|380644678|gb|EIB61843.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1997-10]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|419572510|ref|ZP_14109420.1| tRNA-dihydrouridine synthase B [Campylobacter coli 132-6]
gi|380550690|gb|EIA74329.1| tRNA-dihydrouridine synthase B [Campylobacter coli 132-6]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFHEIKSGKSVD 240
>gi|283955568|ref|ZP_06373062.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1336]
gi|283792911|gb|EFC31686.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
1336]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.3 bits (212), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKNLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|419675718|ref|ZP_14204980.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
110-21]
gi|380651327|gb|EIB67879.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
110-21]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 107/255 (41%), Gaps = 66/255 (25%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ + D++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKTDYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS---GVMIGRGALI 585
A+ P+ NGDI T++ K+ I+ G+MIGR ++
Sbjct: 186 ---------------AKASVKIPVIANGDI-----NTQNAKEVYKITKCDGLMIGRASVG 225
Query: 586 KPWIFQEIKEKKLFD 600
PWIF EIK K D
Sbjct: 226 NPWIFYEIKSGKSVD 240
>gi|419628032|ref|ZP_14160911.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380605757|gb|EIB25714.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23263]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 104/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ + D++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKTDYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|395772669|ref|ZP_10453184.1| dihydrouridine synthase [Streptomyces acidiscabies 84-104]
Length = 380
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 137/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R++
Sbjct: 16 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERND---- 61
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 62 --------------KTMQL-----------------IRFDATETPRS----------IQL 80
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ E+ + D +D+N GCP+ + ++G GS L + N+L++++ ++
Sbjct: 81 YGVDPATVGKAVRMIAEEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLLRAILREAVS 140
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
LP+T+K R GI D+ + + G + I LHGRT Q Y ADW+ I +
Sbjct: 141 GAGDLPVTMKMRKGIDDDHITYLDAGRIAVEEGVTAIALHGRTAAQHYGGTADWEAIAR- 199
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 200 ----------LKEHVPEI--------------------------------------PVLG 211
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 212 NGDIWSAQDALRMVRET-GCDGVVVGRGCLGRPWLFSDL 249
>gi|429766544|ref|ZP_19298805.1| TIM-barrel protein, nifR3 family [Clostridium celatum DSM 1785]
gi|429184226|gb|EKY25251.1| TIM-barrel protein, nifR3 family [Clostridium celatum DSM 1785]
Length = 324
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/342 (23%), Positives = 134/342 (39%), Gaps = 107/342 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
++++ ++L+P+ V ++ FR LCK+ G + +EM A L S AL++
Sbjct: 6 LNFEKSVFLAPMAGVTDISFRGLCKEMGCGLVYTEMVSAKALYYGSENTQALLR------ 59
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ EE+ V Q
Sbjct: 60 -------------------IAEEEKPV------------------------------AAQ 70
Query: 375 LCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+ GN+P ++ + + M V +D+N+GCP I K G GS L+ + +++ +
Sbjct: 71 IFGNDPKIMAEVVEKHFNPMDDVCILDINMGCPAPKITKNGEGSALMLNPKLAGEIVSSI 130
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+VS+ P+TVK R G ++N F GA I +HGRT++Q Y +ADWD I K
Sbjct: 131 KKVSNKPVTVKFRKGYDENNINAVEFAKMMEYSGADAIAIHGRTKKQMYEGKADWDIIAK 190
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
+ S D +I
Sbjct: 191 VKR--SVDIPVI------------------------------------------------ 200
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
GNGD+ + ED +K+ + +MI RG++ PW+F +I++
Sbjct: 201 GNGDVFTPEDALR-MKEITNCDAIMIARGSMGNPWLFNQIEK 241
>gi|404483823|ref|ZP_11019040.1| hypothetical protein HMPREF1135_02100 [Clostridiales bacterium
OBRC5-5]
gi|404343182|gb|EJZ69549.1| hypothetical protein HMPREF1135_02100 [Clostridiales bacterium
OBRC5-5]
Length = 319
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 130/340 (38%), Gaps = 107/340 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ +G L L P+ V +LPFR LCK+ GA + +EM A + + L+K + E
Sbjct: 10 INIEGGLCLGPMAGVSDLPFRHLCKEMGASLLVTEMVSAKAIYFKNKNTEPLMKIDKGEH 69
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+QL G++P ++ + +EE+ D D N+GCP+ I G GS L++
Sbjct: 70 PIALQLFGSDPDIIAQMAASIEER-DFDIFDFNMGCPVPKIVNNGEGSALMK-------- 120
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
NP +L+EE IL ++ +
Sbjct: 121 ----NP-------KLVEE--------------------------------ILTKLVKSVK 137
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ P+T+K R G + DN G S + +H RTREQ Y+ +ADW I+
Sbjct: 138 K----PVTLKIRKGFNDDNINAVEIAKIAEASGVSAVAVHARTREQYYSGKADWSIIKAV 193
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ G +I G
Sbjct: 194 KS-----------------NLGIPVI---------------------------------G 203
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
NGD++ + E + + G+MI R A PWIF+EI+
Sbjct: 204 NGDVVDGKSAKE-MYEYTGCDGIMIARAARGNPWIFKEIR 242
>gi|305432665|ref|ZP_07401826.1| tRNA-dihydrouridine synthase B [Campylobacter coli JV20]
gi|419543337|ref|ZP_14082407.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2548]
gi|419545022|ref|ZP_14083954.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2553]
gi|419546409|ref|ZP_14085166.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2680]
gi|419549845|ref|ZP_14088376.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2688]
gi|419552140|ref|ZP_14090457.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2692]
gi|419555131|ref|ZP_14093239.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2698]
gi|419556855|ref|ZP_14094829.1| tRNA-dihydrouridine synthase B [Campylobacter coli 84-2]
gi|419561107|ref|ZP_14098734.1| tRNA-dihydrouridine synthase B [Campylobacter coli 86119]
gi|419563050|ref|ZP_14100528.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1091]
gi|419566933|ref|ZP_14104177.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1148]
gi|419574310|ref|ZP_14111064.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1891]
gi|419576985|ref|ZP_14113549.1| tRNA-dihydrouridine synthase B [Campylobacter coli 59-2]
gi|419593867|ref|ZP_14129069.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 9854]
gi|419597619|ref|ZP_14132590.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23341]
gi|419598349|ref|ZP_14133232.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23342]
gi|419600727|ref|ZP_14135474.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23344]
gi|419609348|ref|ZP_14143499.1| tRNA-dihydrouridine synthase B [Campylobacter coli H6]
gi|419612901|ref|ZP_14146764.1| tRNA-dihydrouridine synthase B [Campylobacter coli H9]
gi|419614480|ref|ZP_14148261.1| tRNA-dihydrouridine synthase B [Campylobacter coli H56]
gi|304444376|gb|EFM37028.1| tRNA-dihydrouridine synthase B [Campylobacter coli JV20]
gi|380520436|gb|EIA46273.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2548]
gi|380522473|gb|EIA48154.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2680]
gi|380524128|gb|EIA49752.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2553]
gi|380530747|gb|EIA55805.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2698]
gi|380532308|gb|EIA57293.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2688]
gi|380532331|gb|EIA57315.1| tRNA-dihydrouridine synthase B [Campylobacter coli 2692]
gi|380534231|gb|EIA59043.1| tRNA-dihydrouridine synthase B [Campylobacter coli 84-2]
gi|380536311|gb|EIA60950.1| tRNA-dihydrouridine synthase B [Campylobacter coli 86119]
gi|380539304|gb|EIA63692.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1091]
gi|380545005|gb|EIA69000.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1148]
gi|380549777|gb|EIA73528.1| tRNA-dihydrouridine synthase B [Campylobacter coli 1891]
gi|380558313|gb|EIA81493.1| tRNA-dihydrouridine synthase B [Campylobacter coli 59-2]
gi|380568552|gb|EIA91017.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 9854]
gi|380573236|gb|EIA95388.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23341]
gi|380577295|gb|EIA99316.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23342]
gi|380582641|gb|EIB04269.1| tRNA-dihydrouridine synthase B [Campylobacter coli LMG 23344]
gi|380584104|gb|EIB05589.1| tRNA-dihydrouridine synthase B [Campylobacter coli H6]
gi|380589287|gb|EIB10357.1| tRNA-dihydrouridine synthase B [Campylobacter coli H9]
gi|380592626|gb|EIB13496.1| tRNA-dihydrouridine synthase B [Campylobacter coli H56]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.3 bits (212), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + +S++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIAN----------------------------------- 185
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + + G+MIGR ++ PW
Sbjct: 186 ---------------AKASVKIPVIANGDINAQN--AKEVYEITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKNVD 240
>gi|121612695|ref|YP_999847.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
81-176]
gi|167004818|ref|ZP_02270576.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
81-176]
gi|419617979|ref|ZP_14151541.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
129-258]
gi|419652953|ref|ZP_14183996.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
2008-894]
gi|87250431|gb|EAQ73389.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
81-176]
gi|380596053|gb|EIB16763.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
129-258]
gi|380627610|gb|EIB45988.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
2008-894]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
I++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFISIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVSIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|357389461|ref|YP_004904300.1| putative tRNA-dihydrouridine synthase [Kitasatospora setae KM-6054]
gi|311895936|dbj|BAJ28344.1| putative tRNA-dihydrouridine synthase [Kitasatospora setae KM-6054]
Length = 395
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/335 (23%), Positives = 127/335 (37%), Gaps = 105/335 (31%)
Query: 261 LYLSPLTTVGNLPFRRLCKK--WGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+ L+P+ + N PFR LC++ G + SEM L++ + + LIK SE +
Sbjct: 34 VVLAPMAGITNAPFRTLCREQSGGRGLYVSEMITTRALVERNAKTMQLIKFDPSEKPRSI 93
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
QL G +P + K +++ + D +D+N GCP+ + ++G GS L + NL
Sbjct: 94 QLYGVDPETVGKAARMISAEGLADHIDLNFGCPVPKVTRKGGGSALPYKRNLL------- 146
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
+IL+ +
Sbjct: 147 --------------------------------------------RDILRQAVA---NAGD 159
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
LP+T+K R GI D+ + + G S I LHGRT Q Y ADW I
Sbjct: 160 LPVTMKMRKGIDDDHLTYLDAGRIGAEEGVSAIALHGRTAAQHYGGTADWSAIA------ 213
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R RE + + P+ GNGDI
Sbjct: 214 --------------------------RLRE----------------SVPAGIPVLGNGDI 231
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S +D ++++ GV++GRG L +PW+F+++
Sbjct: 232 WSADDAVRMMRET-GCDGVVVGRGCLGRPWLFKDL 265
>gi|205356497|ref|ZP_03223261.1| putative transcriptional regulator [Campylobacter jejuni subsp.
jejuni CG8421]
gi|419696395|ref|ZP_14224254.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|205345684|gb|EDZ32323.1| putative transcriptional regulator [Campylobacter jejuni subsp.
jejuni CG8421]
gi|380674472|gb|EIB89407.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
LMG 23210]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
I++HGRTR+Q Y+ +AD+ I
Sbjct: 161 DFISIHGRTRKQLYSGKADYGSIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|407941590|ref|YP_006857230.1| transcriptional regulator [Campylobacter jejuni subsp. jejuni PT14]
gi|419650268|ref|ZP_14181492.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419677679|ref|ZP_14206819.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
87330]
gi|380628764|gb|EIB47057.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380653807|gb|EIB70204.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
87330]
gi|407905428|gb|AFU42257.1| transcriptional regulator [Campylobacter jejuni subsp. jejuni PT14]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|419620187|ref|ZP_14153634.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
51494]
gi|419629439|ref|ZP_14162165.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
60004]
gi|419673508|ref|ZP_14202973.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
51037]
gi|419679767|ref|ZP_14208739.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
87459]
gi|380601269|gb|EIB21585.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
51494]
gi|380608004|gb|EIB27838.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
60004]
gi|380653558|gb|EIB69969.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
51037]
gi|380656597|gb|EIB72770.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
87459]
Length = 308
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 86.7 bits (213), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 104/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
I++HGRTR+Q Y+ +AD+ I
Sbjct: 161 DFISIHGRTRKQLYSGKADYGSIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVKIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|157414436|ref|YP_001481692.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
81116]
gi|384440797|ref|YP_005657100.1| tRNA-dihydrouridine synthase [Campylobacter jejuni subsp. jejuni
M1]
gi|415747032|ref|ZP_11475776.1| dihydrouridine synthase (Dus) family protein [Campylobacter jejuni
subsp. jejuni 327]
gi|157385400|gb|ABV51715.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
81116]
gi|307747080|gb|ADN90350.1| Probable tRNA-dihydrouridine synthase [Campylobacter jejuni subsp.
jejuni M1]
gi|315931517|gb|EFV10484.1| dihydrouridine synthase (Dus) family protein [Campylobacter jejuni
subsp. jejuni 327]
Length = 305
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 87.0 bits (214), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESIA------------------------------------ 184
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + K G+MIGR ++ PW
Sbjct: 185 --------------SAKASVSIPVIANGDINAQN--AKEVYKITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|452964770|gb|EME69804.1| NifR3-like protein [Magnetospirillum sp. SO-1]
Length = 335
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/334 (23%), Positives = 138/334 (41%), Gaps = 108/334 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
+ L+P+ V ++P RRL K+ GA + SEM +A++ A+I+++
Sbjct: 20 VILAPMAGVTDMPNRRLVKRLGAGLVVSEM-IASQ---------AMIRQN---------- 59
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+ T + + A +F P+ VQL G P
Sbjct: 60 ---------RQTMQMAQHTAEEF-------PMS-------------------VQLAGCEP 84
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG-SGSGLLQRANILQSVITCMNEVSSL 439
V+ + +L + + +D+N+GCP++ + +G +GS L++ N+ +++ + E +
Sbjct: 85 KVMAEAAKL-NQDLGAAIIDINMGCPVKKVALKGEAGSALMRNENLAARIMSAVVEAVDI 143
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+K RTG + + + G ++T+HGRTR Q YT QADW +I + + S
Sbjct: 144 PVTLKMRTGWDMTSRNAPSLARVAEECGIRMVTVHGRTRNQMYTGQADWAFIGEVKRAVS 203
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
P+ GNGD+
Sbjct: 204 --------------------------------------------------IPVIGNGDVE 213
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S +D L+ S + GVMIGRG +PW+ ++
Sbjct: 214 SIDDALSMLELSGA-DGVMIGRGTYGRPWLPGQV 246
>gi|415709283|ref|ZP_11462983.1| NifR3-like protein [Gardnerella vaginalis 6420B]
gi|388056446|gb|EIK79315.1| NifR3-like protein [Gardnerella vaginalis 6420B]
Length = 384
Score = 97.4 bits (241), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 138/354 (38%), Gaps = 110/354 (31%)
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQE 303
IK + K+ + LSP+ + N PFR +C+++G D + +EM A
Sbjct: 3 FSIKPVDLGKVHIATPVVLSPMAGITNWPFRVICREFGPDGLYVAEMITAR--------- 53
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
AL+ R NP L C E++
Sbjct: 54 -ALVAR--------------NPKALRLCRFAPSEKVR----------------------- 75
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
+QL G NP ++ + +++ ++ + D VD+N GCP+ + ++G GS L +
Sbjct: 76 --------SLQLYGVNPSIVEQAARIVVDENMADHVDLNFGCPVPKVTRRGGGSALPWKT 127
Query: 424 NILQSV---ITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
++LQ + + + E + +P+T K R GI +++ ++ G + +TLH RT +
Sbjct: 128 DLLQEILHRVVSVCEPAGIPVTAKFRVGIDENHETFIQAGHIAQEEGCAAVTLHARTTAE 187
Query: 481 RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 540
Y +DW I + + NI
Sbjct: 188 YYGGHSDWQRIGELVEAL----NI------------------------------------ 207
Query: 541 EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
P++GNGDI ED K++ +GV IGRG +PW+F +I+
Sbjct: 208 ----------PVFGNGDIWGAEDALAMFKET-GCAGVAIGRGCQGRPWLFADIR 250
>gi|357413551|ref|YP_004925287.1| nitrogen regulator protein NIfR3 [Streptomyces flavogriseus ATCC
33331]
gi|320010920|gb|ADW05770.1| TIM-barrel protein, nifR3 family [Streptomyces flavogriseus ATCC
33331]
Length = 382
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 136/339 (40%), Gaps = 108/339 (31%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKW--GADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
Q + L+P+ + N PFR LC+++ G + SEM AL++R+E
Sbjct: 19 QPPVVLAPMAGITNAPFRTLCREFSGGKGLFVSEMITTR----------ALVERNE---- 64
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQL 375
K QL I F + S +QL
Sbjct: 65 --------------KTMQL-----------------IHFDASETPRS----------IQL 83
Query: 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT-CMN 434
G +P + K +++ ++ + D +D+N GCP+ + ++G GS L + +L++++ +
Sbjct: 84 YGVDPVTVGKAVRMIVDEDLADHIDLNFGCPVPKVTRKGGGSALPYKRPLLRAILREAVA 143
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ LP+T+K R GI D+ + + G + + LHGRT Q Y ADWD I +
Sbjct: 144 QAGDLPVTIKMRKGIDDDHTTYLDAGRIAVEEGVTAVALHGRTTAQHYGGTADWDAIAR- 202
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ +P+ P+ G
Sbjct: 203 ----------LKEHVPEI--------------------------------------PVLG 214
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI S +D ++++ GV++GRG L +PW+F ++
Sbjct: 215 NGDIWSADDALRMMRET-GCDGVVVGRGCLGRPWLFGDL 252
>gi|419635314|ref|ZP_14167626.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
55037]
gi|380613066|gb|EIB32569.1| tRNA-dihydrouridine synthase B [Campylobacter jejuni subsp. jejuni
55037]
Length = 308
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 72/118 (61%), Gaps = 1/118 (0%)
Query: 255 IDWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
ID+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E
Sbjct: 2 IDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELE 61
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ + VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 62 NPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 60/252 (23%)
Query: 354 FIYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 44 LVYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKV 103
Query: 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGA 468
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 104 VKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGV 160
Query: 469 SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528
+++HGRTR+Q Y+ +AD++ I
Sbjct: 161 DFVSIHGRTRKQLYSGKADYESI------------------------------------- 183
Query: 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
A+ P+ NGDI + + + + G+MIGR ++ PW
Sbjct: 184 -------------ASAKESVKIPVIANGDINAQN--AKEVYEITKCDGLMIGRASVGNPW 228
Query: 589 IFQEIKEKKLFD 600
IF EIK K D
Sbjct: 229 IFYEIKSGKSVD 240
>gi|289422453|ref|ZP_06424296.1| tRNA-dihydrouridine synthase B [Peptostreptococcus anaerobius
653-L]
gi|289157025|gb|EFD05647.1| tRNA-dihydrouridine synthase B [Peptostreptococcus anaerobius
653-L]
Length = 319
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 135/341 (39%), Gaps = 107/341 (31%)
Query: 253 KKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
K + + +++L+P+ V +LPFR +CK+ G + + TE++ +
Sbjct: 4 KDFEVKNEVFLAPMAGVTDLPFRLICKELGCGL------LYTEMINAK------------ 45
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
LC ++ K +L+E+ V
Sbjct: 46 ------ALCYDDQNT-KKMLNILDEEHPV------------------------------A 68
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G+ P + + ++L + + +D+N+GCP + K G GS L++ + V+T
Sbjct: 69 VQIFGSEPEYMGRAAKILNDY-PNEILDINMGCPAPKVIKNGDGSALMKNPKLAADVLTN 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + S+ P+T+K R G D+ D G I +HGRTREQ Y+ +ADWD I
Sbjct: 128 VVKNSNKPVTLKIRKGWDDDSVNAVEIAKIAEDCGIDAIAVHGRTREQFYSGKADWDIIG 187
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ S P+
Sbjct: 188 QVKNAVS--------------------------------------------------IPV 197
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
GNGDI+S ED + +++ + VMIGRGA PWIF+ I
Sbjct: 198 IGNGDIVSVEDVVK-IREMTNCDAVMIGRGAQGNPWIFKRI 237
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,847,826,980
Number of Sequences: 23463169
Number of extensions: 429643083
Number of successful extensions: 1153609
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5194
Number of HSP's successfully gapped in prelim test: 3662
Number of HSP's that attempted gapping in prelim test: 1114404
Number of HSP's gapped (non-prelim): 26547
length of query: 611
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 462
effective length of database: 8,863,183,186
effective search space: 4094790631932
effective search space used: 4094790631932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 80 (35.4 bits)