BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9514
(611 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28BT8|DUS3L_XENTR tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus
tropicalis GN=dus3l PE=2 SV=2
Length = 639
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/565 (38%), Positives = 298/565 (52%), Gaps = 125/565 (22%)
Query: 39 EVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKF 97
E +D + K+ K+ +GQNK+R ++ E+ CP + + C +G+KCKF
Sbjct: 89 EGQDKPPTSAENKQEKKRARGQNKSRPHMKHSQFEENKLCPSVTQECASK-CFFGDKCKF 147
Query: 98 VHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNT 157
+HD ++ KPEDI CY++ G C G+ CRF SHL +N N++ E+++K+W+
Sbjct: 148 LHDVAKYVSEKPEDIRPNCYLYETFGKCIYGVTCRFAKSHLGDNFKNLINEELMKQWEGQ 207
Query: 158 VGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGRE 217
V K N L +++ LRK FEK++K K C K+ DS I+
Sbjct: 208 VLVK--NSLDKSLKEQLRKRKVVFEKTDKYLKL-------------CNKSGDSLKIKS-P 251
Query: 218 EINTPNTDDVI-KVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRR 276
+ N V+ K T G V D D++K++ EKK ID++ KLYL+PLTT GNLPFRR
Sbjct: 252 VVKEDNAAQVVQKDSPVTTVGAVTDEDLVKLRPCEKKTIDFRNKLYLAPLTTCGNLPFRR 311
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
LCK++GADITC EMA+ T LL+ P EWAL+KRH SED+FGVQL G P +TKC +LL
Sbjct: 312 LCKRFGADITCGEMAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLN 371
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ VDFVD+N+GCPI+ +YK+G G GL+ R N F EQ+V
Sbjct: 372 RTIDVDFVDINVGCPIDLVYKKGGGCGLMNRTNKF--------------------EQIV- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456
MN V +P+TVK RTG+ + NI
Sbjct: 411 ----------------------------------KGMNSVLDVPLTVKIRTGVQEKINIA 436
Query: 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
H +P RDWG SL+TLHGR+REQRYTK ADW+YI +CA +
Sbjct: 437 HKLIPNLRDWGVSLVTLHGRSREQRYTKLADWEYIAQCADI------------------- 477
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
SP PL+GNGDI+SYED +L+ +SG
Sbjct: 478 ------------------------------ASPLPLFGNGDIISYEDANRALQT--GVSG 505
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDI 601
+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 506 IMLARGALLKPWLFTEIKEQRHWDI 530
>sp|Q7ZWS1|DUS3L_XENLA tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Xenopus laevis
GN=dus3l PE=2 SV=1
Length = 640
Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/552 (38%), Positives = 292/552 (52%), Gaps = 123/552 (22%)
Query: 51 KKNKQVLKGQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKP 109
K+ K+ +GQNK+R ++ E+ CP + + C +G+KCKF HD ++ KP
Sbjct: 102 KQEKKRARGQNKSRPHMKHSQFEENKLCPSVTQECASK-CFFGDKCKFSHDVAKYVSQKP 160
Query: 110 EDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
EDI C+++ G C G+ CRF SHL E+ NI+ E+++KEW+ V K N L
Sbjct: 161 EDIRPNCHLYETFGKCIYGVTCRFAKSHLGEDFKNIINEELMKEWEGKVLVK--NSLDKS 218
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+++ LRK FEKS+K K S + +K + V++ + D I
Sbjct: 219 LKEQLRKKKVVFEKSDKYLKLCFKSGDSSK--------MKNPVVKEDSAVQVTQKDSPI- 269
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE 289
T G V D D+IK++ EKK ID++ KLYL+PLTT GNLPFRR+CK+ GADITC E
Sbjct: 270 ----TTVGAVTDEDVIKLRPCEKKTIDFRNKLYLAPLTTCGNLPFRRICKRLGADITCGE 325
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
MA+ T LL+ P EWAL+KRH SED+FGVQL G P +TKC +LL + VDFVD+N+G
Sbjct: 326 MAMCTNLLQGQPSEWALLKRHHSEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVG 385
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPI+ +YK+G G GL+ R N F EQ+V
Sbjct: 386 CPIDLVYKKGGGCGLMNRTNKF--------------------EQIV-------------- 411
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
MN V +P+TVK RTG+ + NI H +P RDWG S
Sbjct: 412 ---------------------KGMNSVLDVPLTVKIRTGVQEKVNIAHKLIPNLRDWGVS 450
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
L+TLHGR+REQRYTK A+W+YI++CA++
Sbjct: 451 LVTLHGRSREQRYTKLANWEYIDQCAKI-------------------------------- 478
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
SP PL+GNGDI+SYED +L+ ++GVM+ RGAL KPW+
Sbjct: 479 -----------------ASPVPLFGNGDIISYEDANRALQT--GVAGVMLARGALFKPWL 519
Query: 590 FQEIKEKKLFDI 601
F EIKE++ +DI
Sbjct: 520 FTEIKEQRHWDI 531
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 352 bits (903), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 203/597 (34%), Positives = 301/597 (50%), Gaps = 143/597 (23%)
Query: 28 NETDKRKLEELEVED----DGTAKKKFKKNKQV-----LKGQNKARG---PTFVTKPEDC 75
NE + + + + +ED DG ++ + +Q+ +GQNK R PT K +
Sbjct: 65 NELAEPEAKRIRLEDGQTADGQTEEAAEPGEQLQTQKRARGQNKGRPHVKPTNYDK--NR 122
Query: 76 YCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
CP L + + C +G++C+F+HD ++++KP D+ +C +F G CP G+ CRF
Sbjct: 123 LCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCVLFETFGRCPYGVTCRFAG 181
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKE----- 190
+HL G N+V+E++ + T N L ++Q LRK FE++E+ +
Sbjct: 182 AHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKREVRFERAEQALRRFSQGP 239
Query: 191 ------NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI 244
+ + E + C Q G +TP + V GP+ D D+
Sbjct: 240 TPAAAVPEGTAAEGAPRQENCGAQQVPAGPG---TSTPPSSPV------RTCGPLTDEDV 290
Query: 245 IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEW 304
++++ EKK++D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T LL+ EW
Sbjct: 291 VRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEW 350
Query: 305 ALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
AL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L
Sbjct: 351 ALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCAL 410
Query: 365 LQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424
+ R+ F Q +V ++ L P
Sbjct: 411 MNRSTKF---------------------QQIVRGMNQVLDVP------------------ 431
Query: 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK
Sbjct: 432 ----------------LTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTK 475
Query: 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 544
ADW YIE+C Q
Sbjct: 476 LADWQYIEECVQ------------------------------------------------ 487
Query: 545 QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SP PL+GNGDILS+ED +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 488 -AASPMPLFGNGDILSFEDANRAMQT--GVTGIMIARGALLKPWLFTEIKEQRHWDI 541
>sp|Q91XI1|DUS3L_MOUSE tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Mus musculus
GN=Dus3l PE=2 SV=1
Length = 637
Score = 346 bits (888), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 192/548 (35%), Positives = 282/548 (51%), Gaps = 116/548 (21%)
Query: 58 KGQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS 113
+GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 93 RGQNKSRPHVKPAHYDK--DRLCPSFLQEPA--TPCAFGDRCRFLHDVGRYLETKPADLG 148
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q
Sbjct: 149 PRCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQ 206
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LRK FE++E+ S + K +++T +
Sbjct: 207 LRKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPV 266
Query: 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA 293
GP+ D D+I+++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV
Sbjct: 267 PTCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVC 326
Query: 294 TELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIE 353
T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 327 TNLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPID 386
Query: 354 FIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
+YK+G G L+ R+ F Q +V V+
Sbjct: 387 LVYKKGGGCALMNRSAKF---------------------QQIVRGVN------------- 412
Query: 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473
G+L +P+TVK RTG+ + ++ H +P+ RDWG +L+TL
Sbjct: 413 ----GVL-----------------DVPLTVKMRTGVQERVSLAHRLLPELRDWGVALVTL 451
Query: 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533
HGR+REQRYT+ ADW YIE+CA+
Sbjct: 452 HGRSREQRYTRLADWPYIEQCAK------------------------------------- 474
Query: 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EI
Sbjct: 475 ------------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEI 520
Query: 594 KEKKLFDI 601
KE++ +DI
Sbjct: 521 KEQRHWDI 528
>sp|Q3KRC5|DUS3L_RAT tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Rattus
norvegicus GN=Dus3l PE=2 SV=1
Length = 640
Score = 338 bits (867), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 185/547 (33%), Positives = 276/547 (50%), Gaps = 114/547 (20%)
Query: 58 KGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
+GQNK+R P K + CP L + C +G++C+F+HD ++++KP D+
Sbjct: 96 RGQNKSRPHMKPAHYDK--ERLCPSLLQES-ATPCAFGDRCRFLHDVGRYLETKPADLGP 152
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q L
Sbjct: 153 HCVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQL 210
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK FE++E+ + K +++ D +
Sbjct: 211 RKRQVCFERAEQALSHLTQGPMPTIAPESTVATLTPKHSSCHVQLDNVGGDGARQGSPVP 270
Query: 235 KSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ D D+++++ EKK++D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T
Sbjct: 271 TCGPLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCT 330
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 331 NLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDL 390
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
+YK+G G L+ R+ F + G N + +DV
Sbjct: 391 VYKKGGGCALMNRSAKFQQIVRGMN-----------------EVLDV------------- 420
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474
P+TVK RTG+ + ++ H +P+ R+WG +L+TLH
Sbjct: 421 -------------------------PLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLH 455
Query: 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534
GR+REQRYT+ ADW YIE+CA+
Sbjct: 456 GRSREQRYTRLADWPYIEQCAK-------------------------------------- 477
Query: 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ SP PL+GNGDILS+ED +++ ++G+M+ RGAL+KPW+F EIK
Sbjct: 478 -----------VASPMPLFGNGDILSFEDANCAMQT--GVAGIMVARGALLKPWLFTEIK 524
Query: 595 EKKLFDI 601
E++ +DI
Sbjct: 525 EQRHWDI 531
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 178/569 (31%), Positives = 258/569 (45%), Gaps = 152/569 (26%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDI---------------------------------SEQ 115
C +G C+F HD ++K KP+D+ S +
Sbjct: 93 CDFGTSCRFTHDIAEYIKEKPQDLRIPLLSEFKESPPYGPDLTVIGKPGKKHPNIDFSTK 152
Query: 116 CYVFLQHGYCPMGIACRFGSSHL--DENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQD 173
C V + G C G CR+ H DE G + D K+ + + + +N + +V++
Sbjct: 153 CPVHEESGECRYGYKCRYMGGHALEDEEGNVTLVADEDKKAQVALTSHEINFVGGDVQKQ 212
Query: 174 LRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEE 233
LR Y + +E K+ +E + ++ V+E +E +TD V +
Sbjct: 213 LRSKKYPTPIASAYLEELKSMNDEAQKPQAVV--SETTVME-TDEAQPSSTDAVASEATQ 269
Query: 234 TKSGPVLDTDIIK----------------IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRL 277
+ P ++I ++ SEK+++DW+GK YL+PLTTVGNLPFRR+
Sbjct: 270 NGTEPAPAEEVISKRVGGVQSGKDEPDVPMRFSEKRRLDWKGKTYLAPLTTVGNLPFRRM 329
Query: 278 CKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337
C K GADITC EM +AT L S +EW+L++RH SE +FG+Q+ GN P+ L +++ +
Sbjct: 330 CVKLGADITCGEMGLATSFLAGSKEEWSLVRRHPSEKIFGIQVAGNKPHTLVPTAEVIAK 389
Query: 338 QM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV 395
+ VDFVD+N GCPI+ ++K GSGS LL A G + G N
Sbjct: 390 EFPTGVDFVDLNCGCPIDLVFKAGSGSALLDNAGKLGKIIQGMN---------------- 433
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455
+ E+ L + ++T G+ + N
Sbjct: 434 -----------------------------------RALGEI-PLTVKIRT--GVKEGRNN 455
Query: 456 IHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
H MP+ +W AS ITLHGRTR+QRYTK ADWDYI++C
Sbjct: 456 AHKLMPRISAEWSASAITLHGRTRQQRYTKLADWDYIKECVAAV---------------- 499
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
R RE AD D P P++G GD S +DY E + +
Sbjct: 500 ----------RARE------ADED--------LPPVPIFGGGDCFSSQDYWEKINNY-GV 534
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GVMIGRGALIKPWIF EIKE++ +DI A
Sbjct: 535 DGVMIGRGALIKPWIFTEIKERREWDISA 563
>sp|Q9T0J6|DUS3L_ARATH tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis
thaliana GN=At4g38890 PE=2 SV=2
Length = 691
Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 178/581 (30%), Positives = 266/581 (45%), Gaps = 159/581 (27%)
Query: 77 CPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSS 136
CP + + +C+Y +KC+F HD F K +DI QC C G++CRF S
Sbjct: 100 CPQVARTEDVDSCQYKDKCRFNHDIEAFKAQKADDIEGQCPFVASGMKCAYGLSCRFLGS 159
Query: 137 HLDENGGNIVKED-----VLKE-----WKNT---------------VGNKTVNMLANEVR 171
H D G + KE KE WKN +G+ + A E+
Sbjct: 160 HRDITGNSDDKEKSEMNFFNKETQRLLWKNKMTFTNADAKLKSLGLLGHAKKSNAAEEIT 219
Query: 172 QDLRKHTYNFEKSEKICKENKASKNEN----KDTD-----DCCKNQDSKVIEGREEINTP 222
+ ++ N ++ ++ ++ S +D D + + + K + ++ N+
Sbjct: 220 AEKTQNGMNGTQATEVAVDSAVSSEHTSEMIQDVDIPGPLETEEVRPMKKAKSEDQKNSK 279
Query: 223 NTD-----DVIKVQEETKS-------GPVLDTDIIKIKNSE----------KKKIDWQGK 260
D D +K++EETK V D D IKI ++ KK ID++ K
Sbjct: 280 TGDVGGVYDGVKLEEETKKNGYPTSKANVEDEDSIKIVETDSSLKLHPREKKKLIDFRDK 339
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
LYL+PLTTVGNLPFRRLCK GAD+TC EMA+ T LL+ EWAL++RH SEDLFGVQ+
Sbjct: 340 LYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQI 399
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
CG+ P +++ +L++ + VDF+D+N+GCPI+ + + +GS LL N P
Sbjct: 400 CGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALL------------NKP 447
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
L+ NI++ + + P
Sbjct: 448 ---------------------------------------LRMKNIVE----VSSSIVETP 464
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
IT+K RT + N I + + +WGA+ +T+HGR+R+QRY+K ADWDYI +C + +
Sbjct: 465 ITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQRYSKSADWDYIYQCTKNATT 524
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
+ +I GNGD+ S
Sbjct: 525 NLQVI------------------------------------------------GNGDVYS 536
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
Y D+ + P +S MI RGALIKPWIF EIKE++ +DI
Sbjct: 537 YLDWNKHKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDI 577
>sp|P0CN29|DUS3_CRYNB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=DUS3 PE=3 SV=1
Length = 725
Score = 242 bits (618), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 190/688 (27%), Positives = 285/688 (41%), Gaps = 183/688 (26%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECV------------NETDKRKLEELEVEDDGTAKKKFK 51
SG A IK E+++ V S TD R + D +K K
Sbjct: 22 SGQAPIKAEYLINTTPIVESASASELNNIHPDDAAEGRTDSRDSRDGRDRPDNKRRKPNK 81
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
++K+ KGQNK R + + C + + + G+ C++ H + + KP D
Sbjct: 82 QDKKDKKGQNKGRHFPVIREASVRICRAWETTGICDRADKGD-CRYAHSWEGYFEVKPND 140
Query: 112 ISEQ----------------------------------CYVFLQHGYCPMGIACRFGSSH 137
IS + C V GYCP G CRF +H
Sbjct: 141 ISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCPVLKDLGYCPFGWRCRFLGAH 200
Query: 138 LDENGGNI--------VKEDVLKEWK----------NTVGNKTVNMLANEVRQDLRKHTY 179
+ + E + EW+ N K N +EV LR+ T
Sbjct: 201 VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENGWKQKETNWPEHEVLNALRRSTA 260
Query: 180 NFEKSEKICK----------ENKAS--------KNENKDTDDCCKNQDSKVIEGREEINT 221
+F SE K +NK KN D ++ G +E N
Sbjct: 261 SFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENA 320
Query: 222 PNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + +E+ K + + ++ EK++++W+G YL+PLTTVGNLPFRRLC +
Sbjct: 321 MNATENERNEEKGKVYGETEAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDY 380
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM-- 339
GA IT SEMA+A L+ + +EWAL++RHESE +FGVQ+ G P + +++ +
Sbjct: 381 GATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGK 440
Query: 340 --AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
VDFVDVN+GCPI+ ++ QG+GS L+ G L G N + + D
Sbjct: 441 GGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN-------------RALGD 487
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
P+ ++ G G K N H
Sbjct: 488 I-------PLTVKFRTGVAHG--------------------------------KPN--AH 506
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+P+F +WGA +T+HGR+R+QRY+K ADW+YI+ C + + ++ +P
Sbjct: 507 KLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTC--VTALRESVADANLP------ 558
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P P++GNGD S Y E + +S + G
Sbjct: 559 --------------------------------PVPIFGNGDCFSAASYYEEMDRS-GVDG 585
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDIYAI 604
VM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 586 VMVARGALIKPWIFTEIKERREWDISAV 613
>sp|P0CN28|DUS3_CRYNJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=DUS3 PE=3 SV=1
Length = 725
Score = 242 bits (617), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 190/688 (27%), Positives = 285/688 (41%), Gaps = 183/688 (26%)
Query: 4 SGVAKIKQEFIVEDHVKVLSIECV------------NETDKRKLEELEVEDDGTAKKKFK 51
SG A IK E+++ V S TD R + D +K K
Sbjct: 22 SGQAPIKAEYLINTTPIVESASASELNNIHPDDAAEGRTDSRDSRDGRDRPDNKRRKPNK 81
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
++K+ KGQNK R + + C + + + G+ C++ H + + KP D
Sbjct: 82 QDKKDKKGQNKGRHFPVIREASVRICRAWETTGICDRADKGD-CRYAHSWEGYFEVKPND 140
Query: 112 ISEQ----------------------------------CYVFLQHGYCPMGIACRFGSSH 137
IS + C V GYCP G CRF +H
Sbjct: 141 ISYRPDWSLVGEAPFVVEGERVVGGEDVVGKTLDLDTVCPVLKDLGYCPFGWRCRFLGAH 200
Query: 138 LDENGGNI--------VKEDVLKEWK----------NTVGNKTVNMLANEVRQDLRKHTY 179
+ + E + EW+ N K N +EV LR+ T
Sbjct: 201 VKRVAAAVDGEKEKEAGPEKRMGEWQVENWVQSEVENGWKQKETNWPEHEVLNALRRSTA 260
Query: 180 NFEKSEKICK----------ENKAS--------KNENKDTDDCCKNQDSKVIEGREEINT 221
+F SE K +NK KN D ++ G +E N
Sbjct: 261 SFPFSEAYLKKVDPDKPFTLQNKKPTKQQPHKRKNNVLDEEEAANGPTGIPSAGDDEENA 320
Query: 222 PNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKW 281
N + + +E+ K + + ++ EK++++W+G YL+PLTTVGNLPFRRLC +
Sbjct: 321 MNATENERNEEKGKVYGEPEAIDVPLRPEEKRRLNWEGGRYLAPLTTVGNLPFRRLCVDY 380
Query: 282 GADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM-- 339
GA IT SEMA+A L+ + +EWAL++RHESE +FGVQ+ G P + +++ +
Sbjct: 381 GATITVSEMALAQPLVYGAKEEWALVRRHESEKMFGVQVAGGFPNRMVPAAEVIANTIGK 440
Query: 340 --AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVD 397
VDFVDVN+GCPI+ ++ QG+GS L+ G L G N + + D
Sbjct: 441 GGGVDFVDVNMGCPIDLVFNQGAGSALMDSPGRLGKLLVGMN-------------RALGD 487
Query: 398 FVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457
P+ ++ G G K N H
Sbjct: 488 I-------PLTVKFRTGVAHG--------------------------------KPN--AH 506
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+P+F +WGA +T+HGR+R+QRY+K ADW+YI+ C + + ++ +P
Sbjct: 507 KLIPRFVTEWGAGALTIHGRSRQQRYSKPADWEYIKTC--VTALRESVADANLP------ 558
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
P P++GNGD S Y E + +S + G
Sbjct: 559 --------------------------------PVPIFGNGDCFSAASYYEEMDRS-GVDG 585
Query: 577 VMIGRGALIKPWIFQEIKEKKLFDIYAI 604
VM+ RGALIKPWIF EIKE++ +DI A+
Sbjct: 586 VMVARGALIKPWIFTEIKERREWDISAV 613
>sp|Q9UTH9|DUS3_SCHPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dus3 PE=3 SV=1
Length = 617
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 180/593 (30%), Positives = 272/593 (45%), Gaps = 130/593 (21%)
Query: 36 EELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKC 95
EE V+ DG K+K K+ +GQNK R V K + CP + ++ C Y E C
Sbjct: 13 EEFLVKQDGNKKRKRKE-----RGQNKRREKIHV-KENNALCPAI---SIGNECPYKENC 63
Query: 96 KFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWK 155
KF HD ++ +K DI ++C +F ++G CP G CR+ + H+ N K +++K+
Sbjct: 64 KFPHDVEAYLATKAPDIGDKCPIFERYGVCPAGFKCRWLAGHVVINADG--KYELIKKPD 121
Query: 156 NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKIC-------KENKASKNENKDTDDCCKNQ 208
TVN + EV++ LR + K+E I K + +SK N ++ ++
Sbjct: 122 GQFTLFTVNTVGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKVSNIPEEN--RDA 179
Query: 209 DSKVIEGRE-EINTPNTDDVIKVQ--------EETKSGPVLDTDIIKIKNSEKKKIDWQG 259
S + EG+E E + V+K Q +E S + + ++ EK IDW+
Sbjct: 180 TSAISEGKETESVSLEETGVLKNQTVSVNVDLKEISSQARSNIALPTLRPQEKNLIDWRD 239
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK---------RH 310
+ L+PLTTVGN PFRRLC GAD SEMA+ L++ EWAL++ R
Sbjct: 240 RKILAPLTTVGNPPFRRLCGSLGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRG 299
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
+ GVQL + TK Q++ EQ VDF+D+N GCPI+ +++QG+GS LL+
Sbjct: 300 GRRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLE--- 356
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
NP L + Q
Sbjct: 357 ---------NPGRLLRNLQ----------------------------------------- 366
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQAD 487
M+ VS +P+TVK R G D+ ++ N + + F + S TLHGR+R+QRY+K A+
Sbjct: 367 --GMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNAN 424
Query: 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547
WDYI + A N I D + + +
Sbjct: 425 WDYIGEIASKVKSMNERI--------------------------------DELPEDSLRT 452
Query: 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
P L GNGD S++D+ + + K + VMI RGAL+KPWIF+EI+ ++ D
Sbjct: 453 QPLSLIGNGDCYSWQDWYDGVNK--GVDTVMIARGALVKPWIFEEIEARQFID 503
>sp|A7TQ73|DUS3_VANPO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=DUS3 PE=3
SV=1
Length = 664
Score = 238 bits (606), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 186/619 (30%), Positives = 290/619 (46%), Gaps = 112/619 (18%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
+ G+A IK EFI + + + N+ + + + E K +K+K+ +GQNK
Sbjct: 25 SKGIAHIKAEFIAKSNDNSQFQQAYNDEEIADADRIGAE----GGKNSRKHKKKQRGQNK 80
Query: 63 ARGPTFVTKPEDCYCP-----FLKDSTLEQTCKYGEKCKFVHD-KNVFMKSKPE---DIS 113
+R V K E CP + +D E C++G+KC+FVHD K KPE D
Sbjct: 81 SRDNRQV-KEEKVLCPKYIQGYSEDG--ESLCQFGDKCRFVHDIKEYLSHKKPEIELDQF 137
Query: 114 EQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVG-NKTVNMLANEVRQ 172
+ C VF G+CPMG CRF SSH D+ +VK +E + + VN + +E +
Sbjct: 138 KICPVFDALGFCPMGFKCRFMSSHFDKENFKLVKRGTDEERQKLWSLDHEVNRITSEEKL 197
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKD-TDDCCKNQDSKVIEGREEINTPNTDDVIKVQ 231
L K + F KS ++ + + E +D T +++ + ++ V++ +
Sbjct: 198 SLIKRRFPFTKSNEVLDIIDSIQQEFRDITAPKVSKEEASEDKPKDSNEAEVAPQVLQRE 257
Query: 232 EETKSGPVLDTDI-IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
EE K ++ +K K++ EKK +D + K +SPLTTVGNLP+RRL +K GAD+
Sbjct: 258 EELKKKREHQRELYLKYKDTRYFAQEKKDLDLRRKKIVSPLTTVGNLPYRRLMRKLGADV 317
Query: 286 TCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQMAVDF 343
T SEMA+A L++ + EWAL K H +E FGVQ+ C L + ++
Sbjct: 318 TYSEMALAVPLIQGTNSEWALPKAHSTEIPGFGVQIACSKAWQAAKAAEALAKFTPDINE 377
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403
+++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 378 INLNSGCPIDLLYRQGSGSALL------------DNPARMIRC----------------- 408
Query: 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPK 462
+ MN VS S+PITVK RTG + + + +
Sbjct: 409 --------------------------LNAMNYVSDSIPITVKIRTGTRDSHPVADTLVKR 442
Query: 463 F-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521
+ + ITLHGR+R+QRYT+ ADWDY+ A+ R+ AS +
Sbjct: 443 LVYETDVAAITLHGRSRQQRYTRVADWDYVSTVAK--------------SLRESEASFLE 488
Query: 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581
+E R +K+ GNGD+ ++ED+ L +I +M+ R
Sbjct: 489 -SAEGKESRESKRR--------------IQFVGNGDVNNFEDWHRILNNDENIDSIMVAR 533
Query: 582 GALIKPWIFQEIKEKKLFD 600
GALIKPW+F+E+ ++ D
Sbjct: 534 GALIKPWVFEEVDAQQHLD 552
>sp|A8PTG4|DUS3_MALGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Malassezia globosa
(strain ATCC MYA-4612 / CBS 7966) GN=DUS3 PE=3 SV=1
Length = 766
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 167/593 (28%), Positives = 256/593 (43%), Gaps = 151/593 (25%)
Query: 48 KKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS 107
K+ KKN V + A G T + P P D T++ + G C +
Sbjct: 174 KRIKKNTDVTADAHPASGSTTPSAPT---APTTHD-TVQASVVLGTTCPY---------- 219
Query: 108 KPEDISEQCYVFLQHGYCPMGIACRFGSSHLDE-----------------NGGNIVKEDV 150
F + G CPMG CRF +H+ G +V+++
Sbjct: 220 -----------FQERGTCPMGWKCRFLGAHVRRLSASCRVLGAEAQGMLGTGLELVEDEA 268
Query: 151 LKE-W-------KNTVGNKT--VNMLANEVRQDLRKHTYNFEKSEKICKE--------NK 192
K W +N ++ VN LA++V + LR Y F+K+ I +
Sbjct: 269 KKHAWLHRSPYMRNEAQPESDQVNWLASDVARRLRSRKYTFDKAPAITSALRKEVDMLSA 328
Query: 193 ASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDT--DIIKIKNS 250
+ E T+ +V E + + + ++ ++G D D +++
Sbjct: 329 MTPAEAASTE--VGKGPLRVNYEHERLVADPSATLEACEDALRNGGNDDAAADTARVRPC 386
Query: 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH 310
EK+++ W+G LYL+PLTT GNLPFRRLC +G+DI C EM +A L+ EW+L++R
Sbjct: 387 EKRRLQWKGDLYLAPLTTTGNLPFRRLCASFGSDIHCGEMGMAESFLQGHASEWSLVRRW 446
Query: 311 ESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
E E +FG Q+CG P +L ++L ++ +DFVDVN GCPI+ +Y +G+GS LL A
Sbjct: 447 EGERIFGTQVCGAKPELLVPTAEVLAREVGRGLDFVDVNCGCPIDLVYNKGAGSALLDHA 506
Query: 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
N G I++
Sbjct: 507 NKLG---------------------------------------------------RIVRG 515
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
+ + E+ P+T+K RTG F +WG ++LHGR+R+QRY ADW
Sbjct: 516 MSEALGEI---PLTIKLRTGTTSKPTTHKIFARAQTEWGVGGLSLHGRSRKQRYKNDADW 572
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
YI C + +H+ + R W E ++ + D
Sbjct: 573 AYIRTCV-------DTLHDAV---RTW----------NEEPQHADEPD----------MV 602
Query: 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
P P+YGNGD+ + DY + L+ + + G MI RGALIKPWIF EIKE++ +DI
Sbjct: 603 PVPVYGNGDVYGWRDYYDHLEHA-HVDGTMIARGALIKPWIFTEIKERRDWDI 654
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 52 KNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
K ++ +GQNK R TF T+ ED + +T CK+G+ CKF HD +++ KP D
Sbjct: 79 KPRKRARGQNKGR--TF-TRTEDNIALCTQIATGRDACKFGDSCKFTHDLCTYLEQKPRD 135
Query: 112 ISEQCYVFLQH 122
I + H
Sbjct: 136 IETPPHPVSSH 146
>sp|Q7XT07|DUS3L_ORYSJ tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Oryza sativa
subsp. japonica GN=Os04g0117600 PE=2 SV=2
Length = 685
Score = 236 bits (603), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 181/623 (29%), Positives = 264/623 (42%), Gaps = 177/623 (28%)
Query: 44 GTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNV 103
G A KK+K+ LK + K K C + S +CKYG+ C+F HD +
Sbjct: 65 GGAVVAEKKSKRQLKRERKQE-----QKSSSHLCIEVGKSGNVSSCKYGDSCRFSHDIDA 119
Query: 104 FMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGG----------NIVKEDVLKE 153
++ KP D+ C CP G+ CRF +H D + N + +D+ K
Sbjct: 120 YLAQKPADLEGTCPFTNLDQLCPYGLTCRFLGTHKDIHAASGNLSEKHEINALNKDIQKL 179
Query: 154 -WKN------------TVGNKTV-----------------NMLAN--EVRQDLRKHTYNF 181
WKN +G K V N+ N E ++ L N
Sbjct: 180 LWKNKYKFPKASAQIKLLGLKEVIKSKPDAANDDKKVNHDNLDGNDDENKEPLCNPPVNA 239
Query: 182 EKSEKICKENKASKNE-----------------NKDTDDCCKNQDSKVIEGREEINTPNT 224
E +C+E S+ E +K D + + E PN
Sbjct: 240 ECDSTLCEELDRSEGEPLIDNSIPCVEPRPTKKSKVESDEIDKHGAGTLNTNTESEDPNL 299
Query: 225 DDVIKVQEETKSGPVLDTDIIKIKN-SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA 283
+ ++ + S TD+I + EKK ID++ KLYL+PLTTVGNLPFRRLCK GA
Sbjct: 300 SNGLEPSNNSSS---CRTDLITTPHLREKKIIDFREKLYLAPLTTVGNLPFRRLCKTLGA 356
Query: 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDF 343
DITC EMA+ CT LL+
Sbjct: 357 DITCGEMAM--------------------------------------CTNLLQ------- 371
Query: 344 VDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVD 400
Q S LL+R +LFGVQ+CG P + + +L++ + VDF+D
Sbjct: 372 -------------GQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELVDNECSVDFID 418
Query: 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFM 460
+N+GCPI+ + +G+GS LL + ++S++ + V+ P+TVK RT + N + +
Sbjct: 419 INMGCPIDIVVNKGAGSSLLTKPMRIKSIVQAASTVTEKPLTVKVRTAFFEGRNRADSIV 478
Query: 461 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520
DWGAS IT+HGR+R+QRY+K ADWDYI +CAQ +++ N
Sbjct: 479 SDIYDWGASAITVHGRSRQQRYSKLADWDYIYQCAQKAPDQLHVVGN------------- 525
Query: 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580
GD+ S+ D+ + + IS MI
Sbjct: 526 -----------------------------------GDVFSFTDWNKHVSGCSKISTSMIA 550
Query: 581 RGALIKPWIFQEIKEKKLFDIYA 603
RGALIKPWIF E+KE++ +DI +
Sbjct: 551 RGALIKPWIFTEVKEQRHWDITS 573
>sp|Q6FJ14|DUS3_CANGA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=DUS3 PE=3 SV=1
Length = 640
Score = 229 bits (585), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 258/531 (48%), Gaps = 110/531 (20%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQ----CYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +G+ C+FVHD +++ K +I++ C VF GYCPMG CRF SSH+D+
Sbjct: 91 CTFGDNCRFVHDIPTYLEHKRPEITDSVFKTCPVFETLGYCPMGFKCRFLSSHMDKETHK 150
Query: 145 IVKEDVLKEWKNTVGNKT--VNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTD 202
+ L E+ + + + + +N + + + DL K + F KSE + + + + EN++
Sbjct: 151 L-----LGEYPSDLASASHEINHITQDQKYDLIKKRFPFSKSELVLEILDSFQEENREMH 205
Query: 203 DCCKN--QDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDI-IKIKNS-----EKKK 254
+ +D + E ++ P V++ + E + D+ ++ K++ EKK
Sbjct: 206 REAEKVKEDQQDNEDEQKEKAPQ---VVQRELEAQKRRQRQKDLYLQYKDTRFFAQEKKP 262
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE- 313
+D + K +SPLTTVGNLP+RRL + GAD+T SEMA+A L++ + EWAL K HESE
Sbjct: 263 LDLRHKKIVSPLTTVGNLPYRRLMRTLGADVTYSEMALAVPLVQGTNSEWALPKAHESEY 322
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
FGVQ+ + + +K + L + + +++N GCPI+ +Y+QGSGS LL
Sbjct: 323 PGFGVQVACSKGWQASKAAEALATYIPNGISEINLNSGCPIDLLYRQGSGSALL------ 376
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
+NP + +C +
Sbjct: 377 ------DNPARMIRC-------------------------------------------LN 387
Query: 432 CMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWD 489
MN VS +PITVK RTG + + I + + + + ITLHGR+R+QRYTK ADWD
Sbjct: 388 AMNYVSGDIPITVKIRTGTKEGHPIADTLVRRLVFETDVAAITLHGRSRQQRYTKVADWD 447
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
Y+ + A+ + +FM E K++ D + Q
Sbjct: 448 YVSQVAKALRQAEA---DFM------------------ESPQGKESHHDEKTRHTQFV-- 484
Query: 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGDI +Y D+ + L + P + M+ RGALIKPWIF+EI ++ D
Sbjct: 485 ----GNGDIFNYTDWYQHL-EDPEVDSCMVARGALIKPWIFEEINAQQHLD 530
>sp|Q06053|DUS3_YEAST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DUS3 PE=1
SV=2
Length = 668
Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK +D K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNEN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>sp|A7A1S5|DUS3_YEAS7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Saccharomyces
cerevisiae (strain YJM789) GN=DUS3 PE=3 SV=1
Length = 668
Score = 229 bits (584), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 191/627 (30%), Positives = 292/627 (46%), Gaps = 127/627 (20%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDD-------GTAKKKFKKNKQ 55
+ G+A IK E+IV NE K + + E+ D G KK K +
Sbjct: 26 SKGIAHIKPEYIVPLKQ--------NENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRG 77
Query: 56 VLKGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---D 111
+GQNK R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +
Sbjct: 78 KKRGQNKNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESN 135
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGN--KTVNMLANE 169
I C VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E
Sbjct: 136 IFPSCPVFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPE 195
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ DL K + F KS +I + + + E +D+ K ++ + + P+ + +
Sbjct: 196 RKLDLIKRRFPFTKSNEILEIIDSFQQECRDS---MKPEEEVESTPQLKKQDPDVEQPVA 252
Query: 230 VQEETKSGPVLDTDI------IKIKNS-----EKKKIDWQGKLYLSPLTTVGNLPFRRLC 278
Q E ++ + + + +K K++ EKK +D K +SPLTTVGNLP+RRL
Sbjct: 253 PQVEQRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLM 312
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLE 336
+K GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 313 RKLGADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALAN 372
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVV 396
+ +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 373 SVSEISEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC---------- 410
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455
+ MN VS +PITVK RTG + + I
Sbjct: 411 ---------------------------------LNAMNYVSKDIPITVKIRTGTKEGHPI 437
Query: 456 IHNFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQ-LCSRDNNIIHNFMPKFR 513
+ + + + ITLHGR+R+QRYTK ADWDY+ + A L S + + I K
Sbjct: 438 AEGLVKRLVNETDVAAITLHGRSRQQRYTKSADWDYVSQVADTLRSAEADFIETEQGK-- 495
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
GR + R GNGD+ ++ED+ L + +
Sbjct: 496 ---------EGRDSKNRIQ-------------------FVGNGDVNNFEDWYRYLNGNEN 527
Query: 574 ISGVMIGRGALIKPWIFQEIKEKKLFD 600
I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 528 IDSVMVARGALIKPWIFEEVESQQYLD 554
>sp|Q4P1U2|DUS3_USTMA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=DUS3 PE=3 SV=1
Length = 867
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 156/572 (27%), Positives = 244/572 (42%), Gaps = 176/572 (30%)
Query: 111 DISEQCYVFLQHGYCPMGIACRF--------GSSHLDE---------NGGNIVKEDV-LK 152
D S C +F G+C MG CRF G+S L + +G +V++ +
Sbjct: 273 DWSTTCPIFAVKGFCTMGWKCRFLGSHVRLVGASSLGDPLNPTGFASSGLELVRDQARMD 332
Query: 153 EWK---------------NTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNE 197
EW+ + +N ++ + +RK + K++ + K + +
Sbjct: 333 EWRARTRAFELSHAKQSASDADQDELNFGTSDGMKAMRKRNFPLPKTKAVLKFLETETKQ 392
Query: 198 NKDTDDCCKNQDSKVIEGREEINTPNTDDVIKV--------------------------- 230
D D I G+ I T ++ + V
Sbjct: 393 LADVDP------HGSIAGKGPIPTSVVEEAVAVSAGANGCNGHSTAPASAAAAEAEAEDD 446
Query: 231 ------------------QEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNL 272
Q T +G + D+ +I+ SEK++++W+G+LYL+PLTT GNL
Sbjct: 447 LEELENAMRNRGLHARVAQAATTNGSI---DLARIRPSEKRRLNWRGELYLAPLTTTGNL 503
Query: 273 PFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332
PFRR+C +G+DI C EM +A L + EW+L++RHESE +FG QLCG P +L
Sbjct: 504 PFRRICTGYGSDIHCGEMGLAESFLHGNAAEWSLVRRHESERIFGTQLCGGKPDLLVPVA 563
Query: 333 QLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
+ L+ ++ +DFVD+N GCPI+ ++ +G+GS LL ++P L+K
Sbjct: 564 EALKAEVGDGLDFVDINCGCPIDLVFNKGAGSALL------------DHPTKLSK----- 606
Query: 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGI 449
++ MN V P+T+K RTG
Sbjct: 607 --------------------------------------IVRGMNAVLGDTPLTIKLRTGT 628
Query: 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFM 509
F +W + TLHGR+R+QRY ADW YI CA +
Sbjct: 629 GAKQTTHKIFAKAQTEWRVAAATLHGRSRKQRYKNDADWGYIATCA----------NTLR 678
Query: 510 PKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
+W S R+ + + P P+YGNGD+ S++DY E ++
Sbjct: 679 ESVSEWNES----------SRFADEPE----------MVPIPVYGNGDVYSWQDYYERIE 718
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
++ + G MI RGALIKPW+F EIKE++ +DI
Sbjct: 719 RT-HVDGEMIARGALIKPWLFTEIKERRDWDI 749
>sp|Q54CU9|DUS3L_DICDI tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Dictyostelium
discoideum GN=dus3l PE=3 SV=1
Length = 671
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 179/357 (50%), Gaps = 106/357 (29%)
Query: 247 IKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL 306
+K +EKK+I+++ +L L+PLTTVGNLPFRR+CK+ GADIT EMA+ T+LL+ + E AL
Sbjct: 312 LKANEKKRINFENQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELAL 371
Query: 307 IKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+KRH ED FGVQ+CG+ KC + +E ++ DFVD+N GCPI+ + G+G+ L++
Sbjct: 372 LKRHPCEDKFGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALME 431
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
R K QLL +G S L
Sbjct: 432 RPK---------------KVEQLL----------------------RGISSSL------- 447
Query: 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486
S P T+K R G +D H +P +WGA +TLHGR+R QRY++ A
Sbjct: 448 -----------SCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLA 496
Query: 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546
+WDY+++C+++ S
Sbjct: 497 NWDYVKQCSEVSS----------------------------------------------- 509
Query: 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
PL GNGDI +Y+D ++ S +S +MI RGALIKPWIF EIKEK+ +DI A
Sbjct: 510 ---IPLIGNGDIYNYQDVV-NIYDSSKVSSIMIARGALIKPWIFTEIKEKREWDISA 562
>sp|Q757E3|DUS3_ASHGO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=DUS3 PE=3 SV=1
Length = 647
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 181/611 (29%), Positives = 275/611 (45%), Gaps = 121/611 (19%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA++K E++V ++ + E +D+ E VE +G +KK KK +GQNK R
Sbjct: 29 GVAQLKPEYVVAGAAQLRAAE----SDEELTSERMVEPEGGTRKKSKK----ARGQNKNR 80
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDIS----EQCYVFL 120
K E CP L + C +G +C+++HD +++ K +I C VF
Sbjct: 81 D-NRQAKEEHQLCPRLAQGNAD-ACAFGAQCRYLHDVRTYLEHKTAEIECPQFTGCPVFA 138
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
G CPMG CRF SSH + + + K N VN +A++ + DL K
Sbjct: 139 ATGRCPMGFKCRFLSSHCNMETLELATTPEDERAKLWSVNHEVNHIASDRKLDLVKRRAP 198
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
F +SE + + A + E +D + Q + P V + +E+ +
Sbjct: 199 FPRSEHVLEIIDAIQQEFRD-----EMQGAAAAPEGAVAEVPQ---VQQREEQLSNKRAR 250
Query: 241 DTDI------IKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
++ + EKK +D K +SPLTTVGNLPFRRL ++ GAD+T SEMA+A
Sbjct: 251 QRELYAQYHETRYFAQEKKPLDLHHKKIVSPLTTVGNLPFRRLMRQLGADVTYSEMALAV 310
Query: 295 ELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL--GCP 351
L++ + EWAL K H SE FGVQL + P+ K + L + + ++NL GCP
Sbjct: 311 PLIQGTNSEWALPKAHCSELPGFGVQLACSKPWQAAKAAEALADNVGDGLSEINLNSGCP 370
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I+ +Y+QGSGS LL +NP + +C
Sbjct: 371 IDLLYRQGSGSALL------------DNPARMIRC------------------------- 393
Query: 412 KQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKF-RDWGAS 469
+ MN VS +P++VK RTG + I + + +
Sbjct: 394 ------------------LNAMNYVSKDVPVSVKLRTGTRDGHPIALGLCKRLVMETDVA 435
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGRTR+QRYT+ ADWDY+ + A + + ++ + L G+ R Q
Sbjct: 436 AITLHGRTRQQRYTRSADWDYVGQVA-------DALRSYET---ERAEKLKDREGKLRIQ 485
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD ++ED+ L+ ++ VM+ RGALIKPWI
Sbjct: 486 ----------------------FVGNGDCNNWEDWYRHLENE-NVDSVMVARGALIKPWI 522
Query: 590 FQEIKEKKLFD 600
F+E+ ++ D
Sbjct: 523 FEEVDARQYID 533
>sp|A3LUK5|DUS3_PICST tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Scheffersomyces
stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 /
NRRL Y-11545) GN=DUS3 PE=3 SV=1
Length = 613
Score = 223 bits (568), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 159/528 (30%), Positives = 248/528 (46%), Gaps = 119/528 (22%)
Query: 77 CPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGS 135
C L D +TC YG E+C+ H+ ++ SKP DI C VF GYCP G+ CR+
Sbjct: 88 CTSLLDPDNIKTCAYGPEQCRSTHNVEEYLASKPVDIEGICPVFRAIGYCPAGLKCRWLQ 147
Query: 136 SHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASK 195
SH D+ ++K+ E N VN +++E R LRK Y+F + K+ +
Sbjct: 148 SHYDKETRKLIKDLGRTEASKIELNYEVNNVSHEARGKLRKKQYDFAIAGKVIE------ 201
Query: 196 NENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKI 255
DS V N +++ +E+ K+ D K +EKK++
Sbjct: 202 -----------YIDSTV---------QNDENIANAKEQRKNNEATYVDA-PYKIAEKKRL 240
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-D 314
D++ +SPLTTVGNLP+RRL KK GADIT SEMA++ LL+++ EWAL K H +E
Sbjct: 241 DFRNAKIVSPLTTVGNLPYRRLMKKLGADITYSEMALSVPLLQATNAEWALPKAHRTEYP 300
Query: 315 LFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+GVQ+ + + K +++ E V +++N GCPI+ +Y+QG GS LL++
Sbjct: 301 GYGVQIATSKHWAAAKVAEIISRETEHVSELNLNCGCPIDLLYRQGQGSALLEQ------ 354
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
P L + + + + SG
Sbjct: 355 ------PARLVRILKAM-----------------------NASSG--------------- 370
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYIE 492
+P+TVK RTG ++ N + + + + ITLHGR+R+QRYTK+ADW+YI
Sbjct: 371 ----DIPVTVKIRTGSKENKNTAKTLVERLLAENDVAAITLHGRSRQQRYTKEADWNYIA 426
Query: 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552
+ Q+ + N+ + E + ++ D C
Sbjct: 427 EVGQVVQQWND---------------------KKEENKDSR----DTQRTC--------F 453
Query: 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD+ S+ D+ ++ + I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 454 VGNGDVFSHVDWYNAV-NTDGIDSVMVARGALIKPWIFEEVEAQQYLD 500
>sp|A1D1U0|DUS3_NEOFI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=dus3 PE=3 SV=1
Length = 726
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 192/646 (29%), Positives = 292/646 (45%), Gaps = 134/646 (20%)
Query: 5 GVAKIKQEFIVEDHVK-------VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVL 57
GVA IK EF+V+ + V+S+ + + +E E E +K K+
Sbjct: 58 GVAPIKAEFLVQKSARSQPVEESVVSLSADDAAEAAHYQEREGE---------QKGKKRA 108
Query: 58 KGQNKARGPTFVTKPEDC--YCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDI 112
GQNK R + ED CP S + CK+GEKC+F HD ++K K ED+
Sbjct: 109 SGQNKGRD---FGRSEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDL 165
Query: 113 SE---QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL----KEWKNTVG------ 159
+ C ++ G CP G CR SH+ E + +++++ +E K T
Sbjct: 166 TTFGGICPIWDAKGRCPYGFKCRLVRSHMTERDTSDGRKELILLEDEERKKTARPVVPYA 225
Query: 160 --NKTVNMLANEVRQDL-RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE-- 214
+ VN+++NE + + R+ T + +K SK KN + +E
Sbjct: 226 SEDGLVNIVSNEDKIAVARRKTTTPRSDAYLTWLDKTSKA-------LEKNLHGRHLEEG 278
Query: 215 GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLP 273
G ++ T D + EE ++ V + SEK++I + + L+PLTT GNLP
Sbjct: 279 GADKGAGAQTKDQV---EENRAAYVEPPFL----PSEKRRIYFGPETPALAPLTTQGNLP 331
Query: 274 FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQ 333
FRRLC G T SEMA+ L++ EWAL+K HESE L P ++
Sbjct: 332 FRRLCIDHGCQFTYSEMAMGMSLIQGQKSEWALMKAHESEAL---------PPTISSTAD 382
Query: 334 LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL-FGVQLCGNNPYVLTKCTQLLEE 392
+++ G +L FG Q+ GN P+ K T+LL
Sbjct: 383 VVQ--------------------------GYDNSKDLKFGAQIAGNKPWHAIKATELLGR 416
Query: 393 QMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL-PITVKTRTGIH 450
+ +D+N GCPI+ ++++G+GS LL + L+ ++ MN VS + PITVK RTG
Sbjct: 417 LTPNLRVIDLNCGCPIDQVFREGAGSALLDHPSKLEKMLRGMNAVSEMIPITVKIRTGT- 475
Query: 451 KDNN-----IIHNF--------MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+DN+ +I M G + ITLHGR+R+QRYTK ADW YI +CA L
Sbjct: 476 RDNSPNATKLIERLVLGGHESSMLNIGPPGVAAITLHGRSRQQRYTKSADWSYIAECAAL 535
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
R N + R+ ++ G+ GNGD
Sbjct: 536 IKRLNEKKDDVTDTVREPDERMLPNGGKVF------------------------FLGNGD 571
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+ DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 572 CYSHHDYDDHINNA-GVDAVMVGRGAIIKPWVFEEIQAGQYLDKSA 616
>sp|Q6BS64|DUS3_DEBHA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=DUS3 PE=3 SV=1
Length = 622
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 172/603 (28%), Positives = 272/603 (45%), Gaps = 128/603 (21%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
A G+A IK EFIVE+ + + +N+ +E E D + + +GQNK
Sbjct: 31 AKGIAPIKAEFIVENPDVPVEEKYIND------DEAEGGDRQEEEGGKGGKNKKRRGQNK 84
Query: 63 ARGPTFVTKPEDC-YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + E+ C L D + C++G E C+ H+ ++ SKPEDI C V+
Sbjct: 85 KR--DLKQQHEEVRLCSSLLDPENPKECRFGAENCRNSHNVEEYISSKPEDIEGNCPVYT 142
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN 180
GYCP G+ CR+ SH ++ ++K+ E + N VN + + + L+K Y
Sbjct: 143 AIGYCPAGLKCRWLHSHYNKETHKLLKDLEQVENAKALNNYEVNKITPDKKTSLQKKKYT 202
Query: 181 FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL 240
FE + ++ D +N+ ++ K QE+ K
Sbjct: 203 FEYASQMIPY----------LDSLVQNEA----------------NIEKAQEQAKENQST 236
Query: 241 DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
+ K +EKKK++ + +SPLTTVGNLP+RRL K GAD+T SEMA++ LL+ +
Sbjct: 237 FVEA-PFKVAEKKKLNLRDAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLLQGT 295
Query: 301 PQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ 358
EWAL K H +E +GVQ+ + + + +E V +++N GCPI+ +Y+Q
Sbjct: 296 NAEWALPKAHRTEYPGYGVQIATSKHWAAAKAAEAIYKEATHVSELNLNCGCPIDLLYRQ 355
Query: 359 GSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSG 418
G GS L+++ L G N + SG
Sbjct: 356 GQGSALMEQPARLLRILKGMN-----------------------------------ASSG 380
Query: 419 LLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRT 477
+P+TVK RTG ++ N + + + + ITLHGR+
Sbjct: 381 -------------------DIPVTVKIRTGTKENKNTAKALVERILSENEVAAITLHGRS 421
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRYTK+ADW Y++ A NI+ ++ K D +E R T+
Sbjct: 422 RQQRYTKEADWSYVQDVA-------NIVQDWNNKKED-----------NKELRDTQ---- 459
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P GNGD+ ++ED+ ++ P + VM+ RGALIKPWIF+E++ ++
Sbjct: 460 -----------PTCFVGNGDVYTHEDWYNAV-NIPGVDSVMVARGALIKPWIFEEVEAQQ 507
Query: 598 LFD 600
D
Sbjct: 508 YLD 510
>sp|Q6C4K3|DUS3_YARLI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=DUS3 PE=3 SV=1
Length = 622
Score = 216 bits (549), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 159/529 (30%), Positives = 244/529 (46%), Gaps = 122/529 (23%)
Query: 80 LKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLD 139
K+ Q C YG+KCKF HD +++SKP+DI C VF G CP G CR+ SSH D
Sbjct: 100 FKEDGSPQECSYGDKCKFEHDLQKYLESKPKDIEGVCPVFDLTGQCPQGYKCRWLSSHRD 159
Query: 140 ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
G +V E+ + K NK +N + + L++ Y+ KS
Sbjct: 160 SEGKLLVDEE---KKKANADNKELNHVFKHL-NPLQRKKYDLSKS--------------- 200
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQG 259
D+ K D++++ R+E D+ K++++ ++ D +I+ SEKKK+D +G
Sbjct: 201 --DEAIKLIDAQIV--RDE-----DDEQTKLEKKE----TIEIDTGRIRPSEKKKLDLKG 247
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE----DL 315
K +SPLTTVGNLP+RRL K GAD+T EMA+ L++ EWAL + H SE +
Sbjct: 248 KYIVSPLTTVGNLPYRRLMKDLGADVTYGEMALTLPLIQGHKAEWALTRCHSSEVTEGNH 307
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
FGVQ+ + K Q + E + +++N GCPI+ +Y+QG+GS L+
Sbjct: 308 FGVQVTAPKHWQAIKAAQAVSELCTGISEINLNCGCPIDLVYRQGAGSALMD-------- 359
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
+QG + A I++ +
Sbjct: 360 -------------------------------------QQG------KTARIVRGMSMVSG 376
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+V PITVK RTG + + TLHGR+R QRYTK ADW+YI +
Sbjct: 377 DV---PITVKMRTGTGSTPTAKKLTARLLAEGQTAAFTLHGRSRAQRYTKLADWNYIREV 433
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
A S++ RE+ D++ + P + G
Sbjct: 434 AD---------------------SVVNTRDDVREKSELD----DHV-----ISHPTWVVG 463
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
NGD ++ D+ ++ ++ + VM+ RGALIKPWIF+E++ ++ D A
Sbjct: 464 NGDCYTWSDWHRAVDEA-HVDSVMVARGALIKPWIFEEVESRQHIDKSA 511
>sp|A5DTS1|DUS3_LODEL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=DUS3 PE=3 SV=1
Length = 642
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 154/512 (30%), Positives = 237/512 (46%), Gaps = 106/512 (20%)
Query: 92 GEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL 151
E CK+ H+ ++ +K +DI C V+ GYCP G+ CR+ SH ++ ++K D+
Sbjct: 123 AENCKYSHNIEEYLAAKSDDIEGTCPVYEALGYCPSGLKCRWLHSHYNKETKKLIK-DLE 181
Query: 152 KEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSK 211
K + N VN++ E + L++ +NF+ S + N + KD K +
Sbjct: 182 KLEREKSKNHEVNIIDRESKVALQRKKFNFDISTPVI--NFLESRKQKDDGKQNKEEQEA 239
Query: 212 VIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGN 271
+G E+ QEE K + K +EKKKI+ +G +SPLTTVGN
Sbjct: 240 STDGNEK------------QEERKDNEASYVEQ-PFKVAEKKKINLRGAKIVSPLTTVGN 286
Query: 272 LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPY-VLT 329
LP+RRL K GAD+T SEMA+A L + EWAL K H +E FGVQ+ + +
Sbjct: 287 LPYRRLMKTLGADVTYSEMALAVPLSQGHRPEWALPKAHVTEYPGFGVQIASSKHWAAAK 346
Query: 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQL 389
L + + V +++N GCPI+ ++KQG GS LL ++P L
Sbjct: 347 AAEALYKTTLHVSEINLNCGCPIDLLFKQGQGSALL------------DSPPRL------ 388
Query: 390 LEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449
I + + SG +P+T+K RTG+
Sbjct: 389 -----------------IRIVKAMNASSG-------------------DIPVTIKIRTGV 412
Query: 450 HKD-NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNF 508
++ N +H + + ITLHGR+R+QRYTK+ADWDYIE+ ++
Sbjct: 413 KENKNTAVHLVNRVLEETQVAAITLHGRSRQQRYTKEADWDYIEEVGKVV---------- 462
Query: 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
+ W K+ D D K + +P GNGD+ S+ED+ +
Sbjct: 463 ----KTWN---------------EKREDED---KEGRDTNPTWFVGNGDVYSHEDWYNGV 500
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ + VM+ RGALIKPWIF+E++ ++ D
Sbjct: 501 NRE-GVDSVMVARGALIKPWIFEEVEAQQYLD 531
>sp|A5DBS1|DUS3_PICGU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=DUS3 PE=3 SV=2
Length = 607
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 168/599 (28%), Positives = 268/599 (44%), Gaps = 131/599 (21%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK EFIVE+ VN+ D + E K+ K + + + + R
Sbjct: 25 GIAPIKPEFIVENPSVPADDRYVNDDDAEAGDRNGEEKGKKKKRGQNKKRDMRQQHEEVR 84
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHG 123
C L D + TC++G E C+ HD ++ +K DI C VF G
Sbjct: 85 -----------LCSSLLDPSNPGTCRFGPEHCRSTHDVTTYLAAKAPDIDGVCPVFKSIG 133
Query: 124 YCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEK 183
YCP G+ CR+ +SH ++ G + ++ + + G VN ++ E + L+K Y FE
Sbjct: 134 YCPAGLKCRWLNSHYED--GKLKRDQSQIDAYASSGQGEVNKISTEAKLALQKKKYLFEV 191
Query: 184 SEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTD 243
S D+ K DS+V +D+ I +EE K +
Sbjct: 192 S-----------------DNVIKYLDSQV----------QSDENIAKREEAKENNASYVE 224
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
K +EKKK+D +G +SPLTTVGNLP+RRL K GAD+T SEMA++ LL+++ E
Sbjct: 225 A-PFKIAEKKKLDLRGAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSLPLLQATNSE 283
Query: 304 WALIKRHESE-DLFGVQLCGNNPYVLTKCTQLL-EEQMAVDFVDVNLGCPIEFIYKQGSG 361
WAL K H SE FGVQ+ + + K +++ +E V +++N GCPI+ +Y+QG G
Sbjct: 284 WALPKAHSSEYPGFGVQIATSKHWAAAKAAEVIYKETTHVSELNLNCGCPIDLLYRQGQG 343
Query: 362 SGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421
S L+++ L G N + P+ + G+
Sbjct: 344 SALMEQPARLLRILKGMNA--------------------SSGDIPVTVKIRTGTKDNKNT 383
Query: 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
++++ V+ N+V+++ TLHGR+R+QR
Sbjct: 384 AKSLVERVL-AENDVAAI--------------------------------TLHGRSRQQR 410
Query: 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 541
YTK ADW+YI++ + + NN K+ D
Sbjct: 411 YTKDADWEYIKEVGAVVTEWNN----------------------------KKEED----- 437
Query: 542 KCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
K + + GNGD+ ++ED+ ++ + + VM+ RGALIKPWIF+E++ ++ D
Sbjct: 438 KESSETNRTNFVGNGDVFTHEDWYNAV-NTEGVDSVMVARGALIKPWIFEEVEAQQYLD 495
>sp|Q5ALL3|DUS3_CANAL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=DUS3 PE=3 SV=1
Length = 613
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 178/603 (29%), Positives = 274/603 (45%), Gaps = 137/603 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVED-DGTAKKKFKKNKQVLKGQNKA 63
GVA IK E++V S+ V D +E E D +G +K + NK+ KGQN
Sbjct: 29 GVAAIKAEYLV----PTSSLTVVEYDD----DEAEGGDREGESKPR---NKKKQKGQNHK 77
Query: 64 RGPTFVTKPEDC--YCPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFL 120
R + + +D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF
Sbjct: 78 RD---LKQKKDIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFE 134
Query: 121 QHGYCPMGIACRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTY 179
GYCP GI CR+ SH + ++K+ D ++ K T N VN + + + +++K Y
Sbjct: 135 ALGYCPTGIKCRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKY 192
Query: 180 NFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPV 239
F+ S+ + K DS++ N ++ K +EE K
Sbjct: 193 FFKISQPVIK-----------------YLDSRI---------QNEANLAKQKEERKDNEA 226
Query: 240 LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS 299
+ +EKKK+ + +SPLTTVGNLP+RRL K GAD+T SEMA++ L++
Sbjct: 227 SYVEA-PFTIAEKKKLHLRNAKIVSPLTTVGNLPYRRLMKTLGADVTYSEMALSVPLIQG 285
Query: 300 SPQEWALIKRHESE-DLFGVQLCGNNPY-VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYK 357
EWAL K H SE FGVQ+ + + + V +++N GCPI+ +YK
Sbjct: 286 HNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYK 345
Query: 358 QGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417
QG GS LL + + L G N D+ + I K+G +
Sbjct: 346 QGQGSALLDQPSKLLRILSGMN----------------ASSGDIPVTVKIRTGIKEGKNT 389
Query: 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477
+ N++ V+ N A+ ITLHGR+
Sbjct: 390 AV----NLVSRVLEEGN---------------------------------AAAITLHGRS 412
Query: 478 REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537
R+QRY+K+ADW+YI + + ++W + +E + + D
Sbjct: 413 RQQRYSKEADWNYIAEVGTVV--------------KNWNE-------QQKEDKEGRDRD- 450
Query: 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
P GNGD+ S+ED+ E + + I VM+ RGALIKPWIF+E++ ++
Sbjct: 451 -----------PVYFVGNGDVYSHEDWYEHV-NTDGIDSVMVARGALIKPWIFEEVEAQQ 498
Query: 598 LFD 600
D
Sbjct: 499 YLD 501
>sp|A4RLF4|DUS3_MAGO7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Magnaporthe oryzae
(strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DUS3 PE=3
SV=1
Length = 739
Score = 206 bits (524), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 184/643 (28%), Positives = 282/643 (43%), Gaps = 142/643 (22%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGT-----AKKKFKKNKQVLKG 59
G A IK E++VE V + R + +DD ++ K ++ KG
Sbjct: 77 GQAPIKAEYLVE----------VIHNNGRDARDEGPDDDAAEGRTASEPSGKVARKGKKG 126
Query: 60 QNKARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KP--EDI 112
QN+AR F + C L D + C +G++C HD ++ +P E
Sbjct: 127 QNQAR--DFGRSADSIRLCNSRMLSDEFSPKHCSFGDRCNLSHDLRKYLAEGRRPDLETF 184
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW---------KNTVGNKT- 162
+C +F HG+C G C F SH++E + +ED KE K G +
Sbjct: 185 GGKCPIFEVHGWCNAGWKCLFVRSHMEE----VEREDGRKELVLLRDLTRSKKPEGEASE 240
Query: 163 ------VNMLANEVRQDLRKHTYNFEKSEKICK-----ENKASKNENKDTDDCCKNQDSK 211
VN +A+ + + + + +S + K N + N D+ K ++ +
Sbjct: 241 DGPYGVVNTVASVDKHRMGRSKVDLSRSVEYSKWMDQYTNLVKQLHNARVDE--KKREEE 298
Query: 212 VIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVG 270
+ E R P K SEK+++ + + L+PLTT G
Sbjct: 299 LGELRATFVEP-----------------------PFKPSEKRRLYFGRETPVLAPLTTQG 335
Query: 271 NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330
NLPFRRLC GA T SEMA+A +++ EWAL+K HESE T+
Sbjct: 336 NLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMKAHESE---------------TR 380
Query: 331 CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLL 390
L E +A + PI +Y R FG Q+ ++ + K + L
Sbjct: 381 PPTLSPETLASN-------SPIVKVYDN-------SRDLRFGAQISASSHPLAIKAAECL 426
Query: 391 EEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTG 448
+ + +D+N GCPI+ IYK G+GS LL++ N ++ +I MN VS +PIT K R G
Sbjct: 427 TTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVPITCKLRIG 486
Query: 449 IHKDNNIIHNFM-------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+ +++ + + P FR+ G + ITLHGRTR+QRY K ADW YI +CA L
Sbjct: 487 VKENHPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWGYIAECAAL 546
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
+RD L ++ D + +++ GNGD
Sbjct: 547 IQ-----------SYRDKRDELTDT---------VREPDASTLAPSSEVF----FLGNGD 582
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
S+ DY +++ +S + VMIGRGALIKPW+F+EI + D
Sbjct: 583 CYSHADYYKAIDES-HVDTVMIGRGALIKPWVFEEIAAGQYLD 624
>sp|Q6CWM0|DUS3_KLULA tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=DUS3 PE=3 SV=1
Length = 665
Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 167/564 (29%), Positives = 254/564 (45%), Gaps = 116/564 (20%)
Query: 58 KGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ-- 115
+GQNK R V + F+ + ++ TC + KC++VHD ++ K +I +
Sbjct: 85 RGQNKNRDNRQVREQHALCSKFV--TNVDATCSFDTKCRYVHDVREYLSKKAPEIKTEFF 142
Query: 116 --CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTV-GNKTVNMLANEVRQ 172
C V+ G+CPMG C F SSH + + + E K N +N + E +
Sbjct: 143 PICPVWQSLGHCPMGYKCCFLSSHCNMETLELKDLYEVDERKKLYEANHEINHIDGERKY 202
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKV-IEGREEINTPNTDDVIKVQ 231
DL K ++F KS+ I + A + EN+D + K ++ E+ N D+ + Q
Sbjct: 203 DLIKRRFSFTKSDYILEIIDAMQQENRDLMNTSKGSETTTDANAGEDAN----DEKVSFQ 258
Query: 232 EETKSGPV-----------LDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKK 280
K + L + EK+K+D K +SPLTTVGNLP+RRL +K
Sbjct: 259 ATEKQNQLTEKRERQRELYLKYHDTRFFAQEKRKLDLHHKKIVSPLTTVGNLPYRRLMRK 318
Query: 281 WGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQL-CGNNPYVLTKCTQLLEEQ 338
GAD+T SEMA+A L++ + EWAL K H SE FGVQ+ C L
Sbjct: 319 LGADVTYSEMALAVPLIQGTNSEWALPKAHCSEFPGFGVQIACSKTWQAAKAAEALAANV 378
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
V +++N GCPI+ +Y+QGSGS LL +NP + +C
Sbjct: 379 TGVSEINLNSGCPIDLLYRQGSGSALL------------DNPARMIRC------------ 414
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIH 457
+ MN VS+ +P+TVK RTG + + I
Sbjct: 415 -------------------------------LNGMNYVSNDIPVTVKIRTGTREGHPIAL 443
Query: 458 NFMPKF-RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWG 516
+ + + + ITLHGRTR+QRYTK ADWDY+ + A
Sbjct: 444 SITKRLVLETDVAAITLHGRTRQQRYTKSADWDYVGEVAN-------------------- 483
Query: 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576
++ T +E + + D I+ GNGD ++ED+ + L ++ ++
Sbjct: 484 -AVRTYEAERQENKNLR--DGQKIQ----------FVGNGDCNNWEDWYKHL-ENKNMDS 529
Query: 577 VMIGRGALIKPWIFQEIKEKKLFD 600
VM+ RGALIKPWIF+E+ ++ D
Sbjct: 530 VMVARGALIKPWIFEEVDAQQYMD 553
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 203 bits (517), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 178/643 (27%), Positives = 270/643 (41%), Gaps = 131/643 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKL------EELEVEDDGTAKKKFKKNKQVLK 58
G+A +K EFIV+ + +E N D ++ E E G K + +
Sbjct: 63 GIAPVKAEFIVQKSARPQPVEADNTVDADDAAEAASHQQRESEQKGKKKTSGQNKGRDFG 122
Query: 59 GQNKARG--PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE- 114
N A+G P+ PE + P + CK+G++C+F HD ++K K D++
Sbjct: 123 QHNDAKGLCPSRAFSPE--FSP--------KECKFGDRCRFEHDVRTYLKEHKRADLTTF 172
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
C ++ G CP G CRF SH+ E + KE VL E + K L
Sbjct: 173 GGICPLWEAKGRCPYGYKCRFVGSHMTERETADGRKELVLVEDET---RKKAQPLVPHAS 229
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDV---- 227
+D + + E +K+ + K D ++ SK +E + ++ + DD
Sbjct: 230 EDGIVNAVSME--DKVAVARRKIKTPRSDAYLTWLDKTSKALE--KNLHGRHFDDDAEGE 285
Query: 228 ----IKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+KV E ++ + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 286 VGADVKVSLEDVRAAYVEPPFLP---SEKRRLYFGPETPALAPLTTQGNLPFRRLCTDLG 342
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A T SEMA+ L++ EWAL+K HE+E + FG Q+
Sbjct: 343 AQFTYSEMAMGMSLIQGQKSEWALMKAHETEAIPPTISSGANIVQGYDNSQDLKFGAQIA 402
Query: 322 GNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
N P+ K T+LL + +D+N GCPI+ +Y+ G+GS LL + L G N
Sbjct: 403 ANKPWHAIKATELLGRLTPHLRVIDLNCGCPIDQVYRDGAGSALLDHQSKLEKILRGMNA 462
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
V+ PI + G+ +++ + +E S L
Sbjct: 463 --------------------VSEAIPITVKIRTGTRDASPNALKLIERLTLGGHESSML- 501
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
N P G + ITLHGRTR+QRYTKQADW YI +CA L R
Sbjct: 502 -----------------NIGPP----GVAAITLHGRTRQQRYTKQADWSYIAECAALIKR 540
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
N R+ A + G+ GNGD S
Sbjct: 541 LNEKTDEVTDTVREPDARTLPNGGKVY------------------------FLGNGDCYS 576
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
++DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 577 HKDYEDHINNA-GVDAVMVGRGAIIKPWVFEEIQTGQYLDKTA 618
>sp|Q4WRX4|DUS3_ASPFU tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=dus3 PE=3 SV=1
Length = 726
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 179/658 (27%), Positives = 275/658 (41%), Gaps = 158/658 (24%)
Query: 5 GVAKIKQEFIVEDHVK-------VLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVL 57
GVA IK EF+V+ + LS+ + + +E E + +K K+
Sbjct: 58 GVAPIKAEFLVQKSARSQPVEESALSLSADDAAEAAHYQEREGD---------QKGKKKA 108
Query: 58 KGQNKARGPTFVTKPEDC--YCPFLKDST--LEQTCKYGEKCKFVHDKNVFMKS-KPEDI 112
GQNK R + ED CP S + CK+GEKC+F HD ++K K ED+
Sbjct: 109 SGQNKGRD---FGRSEDAKGLCPSRAFSPEFSPKECKFGEKCRFEHDVRTYLKEHKREDL 165
Query: 113 SE---QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANE 169
+ C ++ G CP G CR SH+ E + G K + +L +E
Sbjct: 166 TTFGGICPIWDAKGRCPYGFKCRLVGSHMTER-------------DTSDGRKELILLEDE 212
Query: 170 VRQDLRKHTYNF----------EKSEKICKENKASKNENKDTDDCCKNQDSKVIE----- 214
R+ + + +KI + + D ++ SK +E
Sbjct: 213 ERKKKARPVVPYASEDGLVNIVSNEDKIAVARRKTTTPRSDVYLAWLDKMSKALEKNLHG 272
Query: 215 ------GREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLT 267
G +E T+D + EE ++ V + SEK++I + + L+PLT
Sbjct: 273 RHLEEGGADEGARAQTNDQV---EENRAAYVEPPFL----PSEKRRIYFGPETPTLAPLT 325
Query: 268 TVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------ 315
T GNLPFRRLC +G T SEMA+ L++ EWAL+K HESE L
Sbjct: 326 TQGNLPFRRLCIDYGCQFTYSEMAMGMSLIQGQKSEWALMKAHESEALPPTISSTADVVQ 385
Query: 316 ---------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLL 365
FG Q+ GN P+ K T+LL + +D+N GCPI+ ++++G+GS LL
Sbjct: 386 GYDNSKDFKFGAQIAGNKPWHAIKATELLSRLTPNLRVIDLNCGCPIDQVFREGAGSALL 445
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
++P L E+M+ V+ PI + G+ +
Sbjct: 446 ------------DHPSKL--------EKMLRGMNAVSEMIPITVKIRTGTRDNSPNATKL 485
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485
++ ++ +E L N P G + +TLHGR+R+QRYTK
Sbjct: 486 IERLVLGGHESGIL------------------NIGPP----GVAAVTLHGRSRQQRYTKM 523
Query: 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
ADW YI +CA L R N + R+ ++ G+
Sbjct: 524 ADWSYIAECAALIKRLNEKKDDVTDTVREPDERMLPNGGKVF------------------ 565
Query: 546 LCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
GNGD S+ DY + + + + VM+GRGA+IKPW+F+EI+ + D A
Sbjct: 566 ------FLGNGDCYSHYDYDDHINNA-GVDAVMVGRGAIIKPWVFEEIQAGQYLDKSA 616
>sp|A6QYC6|DUS3_AJECN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Ajellomyces
capsulata (strain NAm1 / WU24) GN=DUS3 PE=3 SV=1
Length = 741
Score = 198 bits (503), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 181/645 (28%), Positives = 283/645 (43%), Gaps = 126/645 (19%)
Query: 5 GVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNK 62
GVA +K+E+++E S + + D + + +D G AK+K ++ K+ GQN
Sbjct: 65 GVAPVKKEYLIEVSQSTGQASPRAIADDDAAEAAKHHEKDGGGAKQKGRREKK--GGQNI 122
Query: 63 ARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
R TF ++ C C +G+ CKF HD ++K+ K D+
Sbjct: 123 KR--TFGRSQDEKQLCQTVAYYPEFSPNPCAFGKSCKFEHDIRKYLKNYKRADLDTFGGV 180
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGN------IVKEDVLKEWKNTVGNK-----TVN 164
C V+ G CP G CRF SH+ E ++ ED + T N VN
Sbjct: 181 CPVWEAKGRCPSGWKCRFVGSHMAERETEDGRKELVLVEDASRMRHPTSTNGIEVDGVVN 240
Query: 165 MLANEVRQDLRKHTYNFEKSEKICK-ENKASKNENKDTDDCCKNQDSKVIEGREEINTPN 223
++ E + L K Y K++ + S+ ++ +++ + V + T +
Sbjct: 241 VVTTEAKLALAKKRYQTPKADSYTTWIDTVSREVERNLHGRNQDEAASVPGNADGQGTSD 300
Query: 224 TDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWG 282
+ D ++E + + SEK+++ + + L+PLTT GNLPFRRLC G
Sbjct: 301 SKD----RKEDNRAQYTEPPFLP---SEKRRLYFGPETPVLAPLTTQGNLPFRRLCVDLG 353
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLC 321
A +T SEMA++ L++ S EWAL+K HESE L FG Q+
Sbjct: 354 AQLTYSEMAMSMSLVQGSKSEWALMKAHESETLPPAVNPKQTIVKDYDNSRDLKFGAQIT 413
Query: 322 GNNPYVLTKCTQLLEE---QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378
GN P+V + T+ + Q+ V +D+N GCPI+ ++++GSGS LL A+
Sbjct: 414 GNKPWVALRATEAMTALCPQLRV--IDMNCGCPIDMVFREGSGSALLDHASKL------- 464
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS 438
E+M+ V+ PI + G+ +++ +I M V S
Sbjct: 465 -------------EKMLRGMNAVSGEIPITAKIRMGTKDSNPTATKLIERLI--MGGVES 509
Query: 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 498
I G + ITLHGR+R+QRY++QADW+YI +CA L
Sbjct: 510 HEIGRGPA--------------------GVAAITLHGRSRQQRYSRQADWEYISQCAALV 549
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
R N D G I K+ D ++ GNGD
Sbjct: 550 KRLNEQT--------DIGTDTI------------KEPDARDQPSAGKVF----FLGNGDC 585
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
S+EDY ++KS + VM+ RGAL+KPWIF+EI++ + D A
Sbjct: 586 YSHEDYFNGIQKS-GVDTVMVARGALVKPWIFEEIEKGQYLDKSA 629
>sp|Q2HDP2|DUS3_CHAGB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Chaetomium globosum
(strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 /
NRRL 1970) GN=DUS3 PE=3 SV=2
Length = 713
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 173/597 (28%), Positives = 257/597 (43%), Gaps = 159/597 (26%)
Query: 58 KGQNKARG-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDISE- 114
+GQNK R TF C + CK+G++C +HD ++K + DI+
Sbjct: 107 RGQNKEREFGTFSDAQRLCNTIAWTPEFSPRPCKHGDRCNALHDLRKYLKEGRRPDITTF 166
Query: 115 --QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVL------------KEWKNTVGN 160
+C V+ ++G CP G C F SH+DE + +++ +E +
Sbjct: 167 GGKCPVWEKYGKCPSGWRCLFVHSHMDEIKHEDGRSELVLVGDASKAPEGGEEAAGEIKP 226
Query: 161 KTVNMLANEVRQDLRKHTYNFEKSEK----ICKENKA-SKNENKDTDDCCKNQDSKVIEG 215
VNM+ ++ DL K EKSE+ + K+ K +K+ K DD D +
Sbjct: 227 GVVNMVPVGIKYDLSKKRIPLEKSEQYLAWLAKDTKHLAKHYQKHKDDETNPNDYRA--- 283
Query: 216 REEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPF 274
+ + P K SEK+++ + + L+PLTT GNLPF
Sbjct: 284 -QYVEPP------------------------FKPSEKRRLYFGRETPVLAPLTTQGNLPF 318
Query: 275 RRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQL 334
RRLC + GA +T SEMA+ LL+ +W L++ HESE
Sbjct: 319 RRLCVELGAQVTYSEMALGLPLLQGLKADWTLMRAHESE--------------------- 357
Query: 335 LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM 394
+ N G PI Y + FG Q+ N P+V K T+ L + +
Sbjct: 358 ------IVPPRFNPGGPIVQGYDN-------SKDVKFGAQIAANAPWVAVKATEALSQLL 404
Query: 395 V-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKD 452
+ VD+N GCP++ ++K GSGS LL + L+ +I MN VS +PIT K R G
Sbjct: 405 PHLRLVDLNCGCPVDAVFKSGSGSALLDSHSKLERMIRGMNAVSGEVPITAKIRMG---- 460
Query: 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512
+R+ + T Q +E+ A L S D
Sbjct: 461 ------------------------SRDGKLTAQ---KLVERLA-LGSED----------L 482
Query: 513 RDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLC--------------------- 547
RD G + +TLHGRTR QRYTK ADW YI +CA L
Sbjct: 483 RDMIGAPGCAAVTLHGRTRLQRYTKAADWGYIAECAALIKQFNEKSNDLADTIREADENT 542
Query: 548 --SPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ +Y GNGD S+ +Y + + + + VMIGRGAL+KPW+F+EI++ + D
Sbjct: 543 LPNGGKMYFLGNGDCYSHVEYFDHVDNA-KVDSVMIGRGALVKPWVFEEIEKGQYLD 598
>sp|Q7SG01|DUS3_NEUCR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=dus-3 PE=3 SV=1
Length = 737
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 182/639 (28%), Positives = 262/639 (41%), Gaps = 134/639 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
G+A IK+E++V +V V + D + +G A K KK + KGQNK R
Sbjct: 74 GIAPIKKEYLVVPPSQVAKTAEVVDDDAAE-GRTAPGAEGAAGKDGKKKRP--KGQNKER 130
Query: 65 G-PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KPE--DISEQCYVF 119
F C + CK+GE+C +HD ++K +P+ +C V+
Sbjct: 131 EFGIFADAQRLCNSVAWTPEFSPRHCKHGERCNALHDIRKYLKEGRRPDLNVFGGKCPVW 190
Query: 120 LQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVLKEWKNTVGNKTVNMLA-NEVRQDLRKH 177
HG C G C F SH+ E + KE VL E + + ++ E D R
Sbjct: 191 ETHGKCSSGWRCLFVESHMKEIEHEDGRKELVLTEDPTKIKPEAAPLVPPEEESMDARAG 250
Query: 178 TYNF-EKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKS 236
YN + K+ K ++E D +DS++ + DDV K
Sbjct: 251 VYNVVAPAVKLALSRKKIQHEKSDQYLKWMAKDSELARIHYHKQK-DDDDVAKDYAAQYV 309
Query: 237 GPVLDTDIIKIKNSEKKKIDW-QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
P L K SEK++I + + L+PLTT GNLPFRRLC + GA+IT SEMA+
Sbjct: 310 EPPL-------KPSEKRRIYFGRETPVLAPLTTQGNLPFRRLCVELGAEITYSEMALGLP 362
Query: 296 LLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYVLTKCTQL 334
LL+ +W L++ HESE DL FGVQ+ + P++ K +
Sbjct: 363 LLQGQKADWTLMRAHESEITPPRYTPTGIVDPAYDNSKDLKFGVQITAHAPWIAIKSAET 422
Query: 335 LEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393
L + + +D+N GCPI+ +YK G+GS LL + + G N
Sbjct: 423 LARYLPHLRVIDLNCGCPIDMVYKSGAGSALLDAPSKLERMIRGMN-------------- 468
Query: 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453
T EV P+T K R G+ +DN
Sbjct: 469 -------------------------------------TVSGEV---PVTAKIRMGV-RDN 487
Query: 454 NIIHNFM--------PKFRDW----GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501
++ + P R G + +TLHGRTR+QRYTK ADW YI +CA L
Sbjct: 488 HLTAQKLVERLALGAPDIRAVSGAPGCAAVTLHGRTRQQRYTKAADWSYIAECAALVKSF 547
Query: 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561
N + R+ + GR GNGD S+
Sbjct: 548 NEKADSLQDTIREADERSLPNGGRMY------------------------FVGNGDCYSH 583
Query: 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
DY + + + VM+GRGA+IKPWIF+EI + D
Sbjct: 584 VDYFNHVDNA-KVDSVMVGRGAIIKPWIFEEISAGQYLD 621
>sp|Q5BF62|DUS3_EMENI tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=dus3 PE=3 SV=1
Length = 714
Score = 189 bits (480), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 177/636 (27%), Positives = 270/636 (42%), Gaps = 120/636 (18%)
Query: 5 GVAKIKQEFIV----EDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ 60
GVA IK EF++ + V S + E K E E + KN+ + Q
Sbjct: 52 GVAPIKAEFLIPKPKQGQAAVSSTDDAAEAAAYKDREDEKKGKKKKTTGQNKNRTFGRSQ 111
Query: 61 N-KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---Q 115
+ K + V PE + P C +G+KC+F HD ++K K ED++
Sbjct: 112 DSKGLCASRVYSPE--FSP--------AECPFGDKCRFEHDLRTYLKEHKREDLNTFNGV 161
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW---KNTVGNKTVNMLANEVRQ 172
C V+ G C G CRF SH E V ED KE ++ K + +
Sbjct: 162 CPVWSARGKCDAGWKCRFVGSHSIER----VTEDGRKELVLVEDEERRKKAQPVFPSAAE 217
Query: 173 DLRKHTYNFEKSEKICKENKASKNENKDTD--DCCKNQDSKVIEGREEINTPNTDDVIKV 230
D +T + + K + + + +D D + K G ++ N D +
Sbjct: 218 DGTVNTTSPADKIALAKRQRPTPRADAYSDWLDLTSKELEKYFHGGQQ-NKDAHPDTAQD 276
Query: 231 QEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSE 289
+EE + T+ SEK+++ + + L+PLTT GNLPFRRLC + GA +T SE
Sbjct: 277 KEEKEENRATYTEA-PFMPSEKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSE 335
Query: 290 MAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYVL 328
MA++ L++ EWAL++ HE+E L FG Q+ GN +
Sbjct: 336 MALSMPLIQGHKPEWALMRAHETEALPPTVSARASVVQDYDNSKDMKFGAQIAGNKYRWV 395
Query: 329 TKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCT 387
K T++L + +D+N GCPI+ +Y++GSGS LL + L G N
Sbjct: 396 MKATEVLSSLTPNLRVIDLNCGCPIDLLYREGSGSALLDAPSKLEKMLRGMN-------- 447
Query: 388 QLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447
+ EQ+ PI + G+ +++ +I +E S L
Sbjct: 448 -AVSEQI-----------PITVKIRTGTRDNTPNAQKLVERLILGGHEASML-------- 487
Query: 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
N P G + ITLHGR+R+QRYT++A+W+YI + A L R N
Sbjct: 488 ----------NCGPS----GVAAITLHGRSRQQRYTREANWEYISETAALIKRLNEKSDE 533
Query: 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567
R+ + G+T W GNGD S+ DY +
Sbjct: 534 VTDTIREPEERMRPNGGKT----------W--------------FLGNGDCYSHVDYEDH 569
Query: 568 LKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+K + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 570 IKNA-KVDSVMVGRGALIKPWLFEEIQAGQYLDKSA 604
>sp|Q0CZL3|DUS3_ASPTN tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus terreus
(strain NIH 2624 / FGSC A1156) GN=dus3 PE=3 SV=1
Length = 719
Score = 188 bits (478), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 180/639 (28%), Positives = 273/639 (42%), Gaps = 128/639 (20%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK E++V+ + +S N D + E +D KK K ++GQN R
Sbjct: 59 GVAPIKAEYLVDINAIPVSAPEENTDDAAEAAHHEEREDD------KKKKPKIRGQNTNR 112
Query: 65 GPTFVT-KPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF + E CP C++G+KC+F HD ++K K ED++ C
Sbjct: 113 --TFGRYQDEKGLCPSRVFAPEFSPGECRFGDKCRFEHDLRTYLKEHKREDLTTFGGVCP 170
Query: 118 VFLQHGYCPMGIACRFGSSHLDE-NGGNIVKEDVL-------KEWKNTVGNKTVNMLANE 169
V+ G C G CRF SH+ E + + KE VL K+ V + LAN
Sbjct: 171 VWDARGKCYAGWKCRFVGSHMTERDTPDGRKELVLVEDEERKKKSPRLVPYASEEGLANT 230
Query: 170 VRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK 229
+ D R S K K +A + D Q K + GR + N V++
Sbjct: 231 ISVDDRNAL-----SRKKIKTPRA--DAYSSWLDKTSKQLEKTLHGRRQ----NDGGVVE 279
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
+E + + SEK+++ + + L+PLTT GNLPFRRLC + GA S
Sbjct: 280 FTKEEREEQRANYTEPPFLPSEKRRLYFGPETPTLAPLTTQGNLPFRRLCVELGAQFVYS 339
Query: 289 EMAVATELLKSSPQEWALIKRHESE--------------------DL-FGVQLCGNNPYV 327
EMA++ L++ + EWAL++ HE+E D+ FG Q+ N P+
Sbjct: 340 EMAMSMPLIQGTKSEWALLRSHETELTPPTISPSDKIVQGYDNSKDMKFGAQIAANKPWQ 399
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 400 ALKATEVLSKFTPNLRVIDLNCGCPIDLLFREGAGSALLEHHSKLEKILRGMN------- 452
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G +++ ++ +E L +
Sbjct: 453 -------------AVSEEIPISVKIRLGVRDNAPNAQKLVERLVLGGHESHLLGLG---- 495
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + ITLHGR+R+QRYTKQADW YI + A L N
Sbjct: 496 ------------------PCGTAAITLHGRSRQQRYTKQADWGYIAETAALIKNLN---- 533
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY--GNGDILSYEDY 564
+R + D Y L + +Y GNGD S++DY
Sbjct: 534 ----------------------KRKDELTDTIYEPDERMLPNGGKVYFLGNGDCFSHQDY 571
Query: 565 TESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + + VMIGRGALIKPW+F+EI+ + D A
Sbjct: 572 DDHINNA-GVDSVMIGRGALIKPWLFEEIQTGQYLDKSA 609
>sp|Q1E2F4|DUS3_COCIM tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coccidioides
immitis (strain RS) GN=DUS3 PE=3 SV=1
Length = 724
Score = 186 bits (471), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 167/569 (29%), Positives = 243/569 (42%), Gaps = 144/569 (25%)
Query: 87 QTCKYGEKCKFVHDKNVFMKS-KPEDI---SEQCYVFLQHGYCPMGIACRFGSSHLDENG 142
+TC++G+ C+F H+ ++K K ED+ + C V+ +G C G CRF SH+ E
Sbjct: 138 RTCQFGDNCRFEHNLRKYLKEYKREDLKTFNGMCPVWDAYGLCFSGWKCRFVGSHMTER- 196
Query: 143 GNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE-KICKENKASKNENKDT 201
ED KE + N V +N +E K+ K K D
Sbjct: 197 ---ELEDGRKELVLVEDEERKNAAMPLVEGGAEGGVFNSISTEQKVDLMKKRRKTPKSDA 253
Query: 202 DDCCKNQDSKVIE----GRE-------EINTPNTDDVIKVQEETKSGPVLDTDIIKIKNS 250
++ SK +E GR E N D+V + + K P L S
Sbjct: 254 YTTWLDETSKQLEIHNHGRRFADENNVEANGEARDEVEDRRAQFKEPPFLP--------S 305
Query: 251 EKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR 309
EK+++ + + L+PLTT GNLPFRRLC + GA T SEMA++ +++ EWAL+K
Sbjct: 306 EKRRLYFGSETPVLAPLTTQGNLPFRRLCVELGAQFTYSEMAMSLPIVQGHKGEWALMKA 365
Query: 310 HESEDL---------------------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVN 347
H+SE L FGVQ+ N P+ K T+++ + VD+N
Sbjct: 366 HQSEVLPPTIKPNQGVVKDYDHSRDLKFGVQISANKPWQALKATEVMTALCPHLRVVDLN 425
Query: 348 LGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
GCPI+ +Y+ G+GS LL+ +P L K
Sbjct: 426 CGCPIDLVYRDGAGSALLE------------HPSKLEK---------------------- 451
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN-----IIHNFM-- 460
IL+ + NEV P++ K R G KDN+ +I +
Sbjct: 452 -----------------ILRGMNAVSNEV---PVSAKIRMGT-KDNSPTALKLIERLVLG 490
Query: 461 -PKFRD-----WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514
P+F + G + ITLHGR+R+QRYT++ADW YI +CA L R N + R+
Sbjct: 491 GPEFTEIGQGPAGVAAITLHGRSRQQRYTREADWSYISECAALIRRLNERSDDLTDTIRE 550
Query: 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
L R GNGD S+EDY ++ +S +
Sbjct: 551 ADDRLQAPGRRVY------------------------FLGNGDCYSHEDYYRAIGES-GV 585
Query: 575 SGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
VMI RGAL+KPWIF+EI+ + D A
Sbjct: 586 DTVMIARGALMKPWIFEEIQAGQYLDKSA 614
>sp|Q2UL89|DUS3_ASPOR tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=dus3 PE=3 SV=1
Length = 730
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 180/637 (28%), Positives = 263/637 (41%), Gaps = 119/637 (18%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA +K EFI+ + E TD E + ++ KK K+ GQN R
Sbjct: 63 GVAPVKPEFIIP---RATGTEPQPNTDD--AAEAARHEGAQGQEAGKKKKKKPTGQNTNR 117
Query: 65 GPTF-VTKPEDCYCP--FLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF ++ E CP C++GEKC+F HD ++K K D++ C
Sbjct: 118 --TFGSSQDEKGLCPSRIFTPEFSPGACQWGEKCRFEHDLRTYLKEYKRGDLTTFDGVCP 175
Query: 118 VFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRK 176
V+ G C G CR SH+ E + KE VL E + K L +D
Sbjct: 176 VWDAKGKCLSGWKCRLVGSHMTERETADGRKELVLVE--DEERKKKAQPLVPFAVEDGTA 233
Query: 177 HTYNFEKSEKICKENKASKNENKDTD----DCCKNQDSKVIEGRE---EINTPNTDDVIK 229
+ E KI K K D D + KVI RE E + D +
Sbjct: 234 NIAPIEA--KIALNRKKVKTPRADAYGSWLDKTSRELEKVIHNREVHEERGAESKTDQAE 291
Query: 230 VQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCS 288
++E L+ + SEK++I + + L+PLTT GNLPFRRLC + GA T S
Sbjct: 292 REKEDNRAQYLEPPFLP---SEKRRIYFGPETPVLAPLTTQGNLPFRRLCIELGAQFTYS 348
Query: 289 EMAVATELLKSSPQEWALIKRHESEDL---------------------FGVQLCGNNPYV 327
EMA++ L++ EWAL++ HE+E L FG Q+ N +
Sbjct: 349 EMALSMPLIQGQRGEWALMRAHETEMLPPTISPGADVVQGYDHSKDFRFGAQIAANKHWQ 408
Query: 328 LTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKC 386
K T++L + +D+N GCPI+ ++++G+GS LL+ + L G N
Sbjct: 409 ALKATEVLSAYTPNLRVIDLNCGCPIDLLFREGAGSALLEHPSKLERILRGMN------- 461
Query: 387 TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446
V+ PI + G+ + + +I E S+L +
Sbjct: 462 -------------AVSQEIPITAKIRMGTRDNSPNALKLAERLILGGYESSTLGLGAP-- 506
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
G + +TLHGR+R+QRYT+QADW YI +CA L R N
Sbjct: 507 --------------------GVAALTLHGRSRQQRYTRQADWGYISECAALIKRLNEKTD 546
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
R+ G+T W GNGD S+ DY +
Sbjct: 547 QVTDTVREPDPRTQPNGGKT----------W--------------FLGNGDCYSHLDYDD 582
Query: 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+ + + VM+GRGALIKPW+F+EI+ + D A
Sbjct: 583 HVNNA-GVDTVMVGRGALIKPWLFEEIQAGQYLDKSA 618
>sp|Q0U9D6|DUS3_PHANO tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Phaeosphaeria
nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173)
GN=DUS3 PE=3 SV=2
Length = 739
Score = 182 bits (463), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 150/552 (27%), Positives = 247/552 (44%), Gaps = 123/552 (22%)
Query: 89 CKYGEKCKFVHDKNVFMK-SKPEDISE---QCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C++G+KCKF HD ++K + ED++ QC ++ GYC +G CRF SH +E
Sbjct: 162 CRFGDKCKFEHDLRKYLKEGRREDLTTFDGQCPIYEVRGYCHLGWKCRFVGSHSEERATE 221
Query: 145 ------IVKEDVLKEWKNTVGN----KTVNMLANEVRQDLRKHTYNFEKSEKICKENKAS 194
+++ED ++ K + VN+L EVR L + +S++ + ++
Sbjct: 222 HGRQELVLREDAERKAKFAGLEDDEVEVVNILPKEVRFGLSRRKIGTPRSDQYLEWINSN 281
Query: 195 KNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKK 254
K++ ++ D N + +K + + + ++ + SEK++
Sbjct: 282 KDQERELFD----------------NNQGDTEALKEERDARRAEYVEA---PFRPSEKRR 322
Query: 255 IDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313
+ + + L+PLTT GN+P+RRLC G +T SEMA+ L++ EWAL+K HESE
Sbjct: 323 LYYGPETPVLAPLTTQGNMPYRRLCVDLGCQVTWSEMAMGMPLIQGERGEWALMKAHESE 382
Query: 314 --------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCP 351
D+ FG Q+ N P++ K ++L + + +D+N GCP
Sbjct: 383 IAAPRFQSKGTVVQGYDNAADIRFGAQIAANKPWLANKTVEVLTDNCPKLRAIDLNCGCP 442
Query: 352 IEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
I + ++GSGS LL L G N YV + PI
Sbjct: 443 INLVCEKGSGSALLDSEAKLENILRGMN-YVSKE-------------------VPITVKV 482
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471
+ G+ +++ ++ E + + K +G+ + I
Sbjct: 483 RMGTKDNHPTAQKLIKRLVLGGYEALA---SDKGTSGV-------------------AAI 520
Query: 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531
TLHGR+++QRY+K ADW YI +CA L +R + K +D E
Sbjct: 521 TLHGRSKQQRYSKSADWSYIAECASLINR--------LKKEKDAQTDTAA------EADP 566
Query: 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591
QA+ ++ GNGD S+EDY + + ++ VMIGRGALIKPWIF+
Sbjct: 567 RDQANGGHVY----------FVGNGDCYSHEDYYNHMNNA-NVDSVMIGRGALIKPWIFE 615
Query: 592 EIKEKKLFDIYA 603
EI++ + D A
Sbjct: 616 EIEKGQYLDKSA 627
>sp|A2QAU6|DUS3_ASPNC tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus niger
(strain CBS 513.88 / FGSC A1513) GN=dus3 PE=3 SV=1
Length = 748
Score = 181 bits (460), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 188/674 (27%), Positives = 280/674 (41%), Gaps = 180/674 (26%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKAR 64
GVA IK EFI++ + DG A ++ K K+ GQN R
Sbjct: 69 GVAPIKPEFIIDQQP---TRGQTASDANADDAAEAAHHDGRADEQNGKKKKKKTGQNTNR 125
Query: 65 GPTFVTKPED----CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QC 116
TF + ED C + C +GEKC++ HD ++K K ED++ C
Sbjct: 126 --TF-GRSEDAKGLCSSVNFRPEFSPAECTFGEKCRYEHDLRTYLKEHKREDLTTFNGMC 182
Query: 117 YVFLQHGYCPMGIACRFGSSHLDEN-GGNIVKEDVL---KEWKNTVG--------NKTVN 164
V+ HG C +G CRF SH +E + KE VL +E K V + VN
Sbjct: 183 PVWDVHGKCFVGWKCRFVGSHSEERETADGRKELVLIEDEERKKKVQRLVPFAGEDGAVN 242
Query: 165 MLANEVRQDLRKHTYNFEKS---------------EKICKENKASKNENKDTDDCCKNQD 209
+ + E + L + +F ++ +++ K ++A+ + D K+ +
Sbjct: 243 VASMEDKIALARRKMDFPRAGPYSAWLENTSRTIEKELHKRHRAAPVGAETKDGESKDAE 302
Query: 210 SKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKKKIDWQGKL-YLSPLTT 268
SK + ++E +EE ++ V SEK+++ + + L+PLTT
Sbjct: 303 SKDADSKDE------------KEENRAMYVEPP----FMPSEKRRLYFGPETPALAPLTT 346
Query: 269 VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL------------- 315
GN+PFRRLC + GA T SEMA++ L++ + EWAL++ HESE L
Sbjct: 347 QGNMPFRRLCVELGAQFTYSEMAMSLPLIQGNKSEWALMRAHESEMLPPTMLPGADIVQG 406
Query: 316 --------FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQ 366
FG Q+ N P+ K T+ L + + +D+N GCPI+ ++K G+GS LL+
Sbjct: 407 YDNSKDMKFGAQIAANKPWQAFKATEALAKVTPNLRVIDLNCGCPIDLVFKDGAGSALLE 466
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANIL 426
+P L K
Sbjct: 467 ------------HPSKLEK----------------------------------------- 473
Query: 427 QSVITCMNEVS-SLPITVKTRTGIHKDNN-----IIHNFMPKFRDWGASL---------- 470
+I MN VS +PITVK R G KDNN + + + SL
Sbjct: 474 --IIRGMNTVSDQIPITVKIRMGT-KDNNPNALKLTERLL--LGGYETSLLHHDGAAGAA 528
Query: 471 -ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYT+QADW+YI +CA L R N R+ A G+
Sbjct: 529 AITLHGRSRQQRYTRQADWEYISECAALIKRLNEKTDAVTDTIREPDARTQPNGGKVY-- 586
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
GNGD S+ DY + + + VM+GRG LIKPW+
Sbjct: 587 ----------------------FLGNGDCYSHVDYDNHINNA-GVDAVMLGRGPLIKPWL 623
Query: 590 FQEIKEKKLFDIYA 603
F+EI+ + D A
Sbjct: 624 FEEIQAGQYLDKSA 637
>sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dus3
PE=3 SV=1
Length = 750
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 159/554 (28%), Positives = 247/554 (44%), Gaps = 123/554 (22%)
Query: 89 CKYGEKCKFVHD-KNVFMKSKPEDIS---EQCYVFLQHGYCPMGIACRFGSSHLDE---N 141
C +GE CK HD + + K D++ +C V+ +G C G CRF SH E
Sbjct: 169 CSFGESCKCEHDLRKYLAEGKRGDLTTFNSKCPVWEDNGTCLAGWKCRFVGSHSKEVKRE 228
Query: 142 GGN---IVKEDVLKEWKNTVGNK-----TVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
G ++ ED+ + G++ VN+++ + + DL + EKS+ N
Sbjct: 229 DGRMELVLIEDLERMRTTVAGDEEALGGVVNVVSTKDKLDLARRRTKMEKSDLYT--NWL 286
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKNSEKK 253
KN + +D K + +EE +EE ++ V + SEK+
Sbjct: 287 DKNSEEVNRQSNLRKDQKNDQTQEE------------KEENRARYVEPPFLP----SEKR 330
Query: 254 KIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHES 312
+I + + L+PLTT GNLPFRRLC + GA +T SEMA++ L + EWAL+K HES
Sbjct: 331 RIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLFQGQKSEWALMKAHES 390
Query: 313 E---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLG 349
E DL FG Q+ N P+ K ++L + + +D+N G
Sbjct: 391 EITPPRINPDRSSIVQNYNNSKDLKFGTQISANKPFQAIKAAEILSRFVPHLRVIDLNCG 450
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CPIE +Y+QG+GS LL + P L E+M+ V+ PI
Sbjct: 451 CPIELVYRQGAGSALL------------DAPSKL--------EKMIRGMNAVSGEVPITA 490
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS 469
+ G+ +G + + + ++ + + R G G +
Sbjct: 491 KIRMGTMTG-------KPTALKTIERLAFGGVESRERLGAP----------------GCA 527
Query: 470 LITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529
ITLHGR+R+QRYTK ADW YI +CA L + ++ K D +++ RT
Sbjct: 528 AITLHGRSRQQRYTKNADWSYIAECAAL-------VKSYNQKKDDLTDTIMEPDARTLPN 580
Query: 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589
+I GNGD S+ DY + ++ + S+ VM+ RGALIKPW+
Sbjct: 581 --APDGKLHFI-------------GNGDCYSHVDYLDHIQNA-SVDSVMVARGALIKPWL 624
Query: 590 FQEIKEKKLFDIYA 603
F+EI++ + D A
Sbjct: 625 FEEIEKGQTLDKSA 638
>sp|A6RMI1|DUS3_BOTFB tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Botryotinia
fuckeliana (strain B05.10) GN=dus3 PE=3 SV=1
Length = 750
Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 150/558 (26%), Positives = 248/558 (44%), Gaps = 131/558 (23%)
Query: 89 CKYGEKCKFVHD-KNVFMKSKPEDIS---EQCYVFLQHGYCPMGIACRFGSSHLDENGGN 144
C +G+ CK H+ + + + D++ +C V+ +G C G CRF SH E
Sbjct: 169 CSFGDSCKCEHNLRKYLAEGRRADLTTFNSKCPVWEDNGTCLAGWKCRFVGSHSKE---- 224
Query: 145 IVKED-----VLKEWKNTVGN----------KTVNMLANEVRQDLRKHTYNFEKSEKICK 189
I +ED VL + + +G+ VN+++ + + DL K EKS
Sbjct: 225 IQREDGRMELVLIDDSDRMGDTALGYEEALGSVVNVISTKDKIDLAKKKTPMEKS----- 279
Query: 190 ENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDIIKIKN 249
D +Q+S+ + + + +D + +++ ++ +
Sbjct: 280 ----------DLYTTWLDQNSEEVNRQSNLRKDQKNDQTEEEKQENRARYVEPPFLP--- 326
Query: 250 SEKKKIDWQGKL-YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIK 308
SEK++I + + L+PLTT GNLPFRRLC + GA +T SEMA++ LL+ EWAL+K
Sbjct: 327 SEKRRIYFGPETPVLAPLTTQGNLPFRRLCVELGAQLTYSEMAMSIPLLQGQKSEWALMK 386
Query: 309 RHESE---------------------DL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVD 345
H+SE DL FG Q+ + P++ K ++L + + +D
Sbjct: 387 AHKSEVTPPRVNSDRTSIVRKYDNSKDLKFGTQISASKPFMAIKAAEVLSRFVPHLRVID 446
Query: 346 VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGC 405
+N GCPIE +Y+QG+GS LL + P L E+M+ V+
Sbjct: 447 LNCGCPIELVYRQGAGSALL------------DAPSKL--------EKMIRGMNAVSGEV 486
Query: 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
PI + G+ +G + + ++ + + R G
Sbjct: 487 PITAKIRMGTMTG-------KPTAFKTIERLAFGGVESRERLGAP--------------- 524
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525
G + ITLHGR+R+QRYTK ADW YI +CA L + ++ K D +++ R
Sbjct: 525 -GCAAITLHGRSRQQRYTKSADWSYIAECAAL-------VKSYNQKKDDLTDTVMEPDAR 576
Query: 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585
T + + GNGD S+ DY + ++ + + VM+ RGALI
Sbjct: 577 TLPNAPDGKIHF---------------IGNGDCYSHIDYLDHIQNA-GVDSVMVARGALI 620
Query: 586 KPWIFQEIKEKKLFDIYA 603
KPW+F+EI++ ++ D A
Sbjct: 621 KPWLFEEIEKGQVLDKSA 638
>sp|Q1RH84|DUS_RICBR Probable tRNA-dihydrouridine synthase OS=Rickettsia bellii (strain
RML369-C) GN=dus PE=3 SV=1
Length = 326
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/350 (25%), Positives = 138/350 (39%), Gaps = 111/350 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N I+ + L+P++ V +L FRRL K++GA + SEM + ++ S Q
Sbjct: 1 MIKIGN-----IELSSNIILAPMSGVTDLEFRRLVKRFGAGLVVSEMIASRAMIVESRQS 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
L KC+ + + D C
Sbjct: 56 ------------------------LQKCSIMQD--------DATSAC------------- 70
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
VQL G P V+ + ++ E M +D+N GCP + + SGS L++
Sbjct: 71 ---------VQLAGCEPNVIAEAAKM-NEDMGAKIIDLNFGCPAKKVVNGYSGSALMRDE 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+ + + +P+TVK R G W T
Sbjct: 121 GLAAKIFEAAVKAVKIPVTVKMRMG-----------------W-------------DDQT 150
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
K A A++ R G ++T+HGRTR Q Y+ ADW++I+
Sbjct: 151 KNA-----PTLAKIAERS--------------GIQMVTVHGRTRCQFYSGNADWEFIKNV 191
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
+ P+ NGDI ++ E+L+KS S GVM+GRGA KPW+ +I
Sbjct: 192 KEAVK-IPVIANGDITNFAKAKEALEKS-SADGVMVGRGAYGKPWLISQI 239
>sp|O67533|DUS_AQUAE Probable tRNA-dihydrouridine synthase OS=Aquifex aeolicus (strain
VF5) GN=dus PE=3 SV=1
Length = 316
Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 137/347 (39%), Gaps = 112/347 (32%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+G++ L+P+ + + FRRLC++ GAD T +E+ A +L++
Sbjct: 5 KGEVILAPMASYTHSAFRRLCRRLGADRTYTELISAVGVLRN------------------ 46
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
G P++ Y + +Q+ G
Sbjct: 47 -------------------------------GIPMKLAY-------FTEEERPIHIQVFG 68
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV- 436
+NP + + + ++ +++ DF+D+N GC + + + + +LQ ++ V+ E
Sbjct: 69 SNPEEIAQASVVIAKELKPDFIDINFGCSVPKVLRNKAAGYMLQCPPLMGEVVKETVEAL 128
Query: 437 --SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+P++ K R G KD
Sbjct: 129 KPYGIPVSAKIRLGFEKDE----------------------------------------- 147
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
+ + + + G SLI +H RT +Q ++ +A W I++ ++ S P+ G
Sbjct: 148 ----------VERIVEELQKAGVSLIAIHARTAKQGFSGKALWHRIKEAKKVAS-VPIIG 196
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+GD+ S+ D E + + GVM+GR AL PWIF+E KEK+ ++
Sbjct: 197 SGDVKSWRD-IERMFEETECDGVMVGRAALSNPWIFKEFKEKRDIEV 242
>sp|Q4UNJ4|DUS_RICFE Probable tRNA-dihydrouridine synthase OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=dus PE=3 SV=1
Length = 325
Score = 96.7 bits (239), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 128/339 (37%), Gaps = 106/339 (31%)
Query: 255 IDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
I+ + L+P++ + +L FR+L K++GA + SEM + ++ S Q
Sbjct: 7 IELSSNVILAPMSDITDLEFRKLVKRFGAGLVVSEMIASRAMVVKSRQS----------- 55
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQ 374
+ KC A+ D C VQ
Sbjct: 56 -------------MQKC--------AIVHDDPTSAC----------------------VQ 72
Query: 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN 434
L G P V+ + ++ E M +D+N GCP + + +GS L++ + +
Sbjct: 73 LAGCEPNVIAEAAKM-NEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDEQLAAKIFEATV 131
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
+ +PITVK R G + + G ++T+HGRTR Q Y+ ADWD+I
Sbjct: 132 KAVKIPITVKMRMGWDDNTKNAPDLAKIAESSGVQMVTVHGRTRCQFYSGNADWDFI--- 188
Query: 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG 554
R K+A P+
Sbjct: 189 -----------------------------------RSVKEA------------VKIPVIA 201
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
NGDI ++ E+L+KS + G+M+GRGA KPW+ +I
Sbjct: 202 NGDITNFAKAKEALQKSGA-DGIMVGRGAYGKPWLVSQI 239
>sp|Q9ZED2|DUS_RICPR Probable tRNA-dihydrouridine synthase OS=Rickettsia prowazekii
(strain Madrid E) GN=dus PE=3 SV=2
Length = 327
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 132/350 (37%), Gaps = 111/350 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N I+ + L+P++ V +L FR+L K++GA + SEM + ++ S Q
Sbjct: 1 MIKIGN-----IELSSNVILAPMSDVTDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQS 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ KC + + D C
Sbjct: 56 ------------------------MQKCAIMHD--------DPTSAC------------- 70
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
VQL G P V+ + ++ E M +D+N GCP + + +GS L++
Sbjct: 71 ---------VQLAGCEPDVIAEAAKM-NEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDE 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+ + + +P+TVK R G + + G ++T+HGRTR Q Y+
Sbjct: 121 QLAAKIFEATVKAVKIPVTVKMRIGWDDNTRNAPTLAKIAANSGVQMVTVHGRTRCQFYS 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
A+WD+I R K+A
Sbjct: 181 GNANWDFI--------------------------------------RTVKEA-------- 194
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGDI ++ E+L++S + G+M+GRG KPW+ +I
Sbjct: 195 ----VKIPVIANGDITNFAKAKEALQRSGA-DGIMVGRGVYGKPWLISQI 239
>sp|P41504|DUS_RHILP Probable tRNA-dihydrouridine synthase OS=Rhizobium leguminosarum
bv. phaseoli GN=dus PE=3 SV=1
Length = 317
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/329 (21%), Positives = 124/329 (37%), Gaps = 108/329 (32%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
++ L+P++ V ++PFR L ++GA + +EM + EL+ + + W+ +K
Sbjct: 6 RVVLAPMSGVTDMPFRELAWRFGAGLVVTEMVASRELVNDTAESWSRLK----------- 54
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
G P++ VQL G
Sbjct: 55 AAGFRPHM---------------------------------------------VQLAGRE 69
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
+ + + ++ + D +D+N+GCP + + SGS L++ + +I + +
Sbjct: 70 AHWMAEAAKIAADHGA-DIIDINMGCPAKKVIGGYSGSALMRDPDHALGLIEATVKAVDI 128
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+T+K R G +++ + + G L+T+HGRTR Q Y +ADWD I ++ S
Sbjct: 129 PVTLKMRLGWDENSINAPDIARRAEASGIQLVTIHGRTRMQFYEGRADWDAIRAVREVIS 188
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
PL NGD+
Sbjct: 189 --------------------------------------------------VPLIANGDVE 198
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPW 588
+ D E L++S + VMIGRG +PW
Sbjct: 199 TAHDAQEILRRSGA-DAVMIGRGCQGRPW 226
>sp|Q68XZ3|DUS_RICTY Probable tRNA-dihydrouridine synthase OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=dus PE=3 SV=1
Length = 327
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 79/350 (22%), Positives = 130/350 (37%), Gaps = 111/350 (31%)
Query: 244 IIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+IKI N I+ + L+P++ + +L FR+L K++GA + SEM + ++ S Q
Sbjct: 1 MIKIGN-----IELSSNVILAPMSNITDLEFRKLVKRFGAGLVVSEMIASRAMIMKSRQS 55
Query: 304 WALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSG 363
+ KC + + D C
Sbjct: 56 ------------------------MQKCAIMHD--------DPTSAC------------- 70
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
VQL G P V+ ++ E M +D+N GCP + + +GS L++
Sbjct: 71 ---------VQLAGCEPDVIADAAKM-NEDMGAKIIDLNFGCPAKKVVGGYAGSALMRDE 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483
+ + + +P+TVK R G + G ++T+HGRTR Q Y+
Sbjct: 121 RLATKIFEATVKAVKIPVTVKMRMGWDDNTKNAPTLAVIAASSGVQMVTVHGRTRCQFYS 180
Query: 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 543
A+WD+I R K+A
Sbjct: 181 GNANWDFI--------------------------------------RVVKEA-------- 194
Query: 544 AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
P+ NGDI ++ E+L+KS + G+M+GRG KPW+ +I
Sbjct: 195 ----VKIPVIANGDITNFAKAKEALQKSGA-DGIMVGRGVYGKPWLISQI 239
>sp|Q7VNP2|DUSB_HAEDU tRNA-dihydrouridine synthase B OS=Haemophilus ducreyi (strain
35000HP / ATCC 700724) GN=dusB PE=3 SV=1
Length = 320
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 133/342 (38%), Gaps = 119/342 (34%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWAL------IKRHESE 313
+++L+P+ + + PFRRLC + GA +T SEM + ++P W + H
Sbjct: 11 RIFLAPMAGITDQPFRRLCSQLGAGLTFSEM------MSTNPDVWHTEKSRLRLAHHAEI 64
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGV 373
+ VQ+ G+ P + + + + +D+N+GCP + + K+ +GS LL+
Sbjct: 65 GINAVQIAGSEPTEIAEAAK-INVAYGAQIIDINMGCPAKKVNKKMAGSALLR------- 116
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
E Q+V A IL +V+ +
Sbjct: 117 -----------------EPQLV---------------------------ARILDAVVNAV 132
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
+ +P+T+K RTG K + G S +T+HGRTR+ + QA+++ I+
Sbjct: 133 D----VPVTLKIRTGWDKTHKNFLQIAKIAEKAGISALTIHGRTRDCLFNGQAEYESIKA 188
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
Q FM P+
Sbjct: 189 VKQAV---------FM-----------------------------------------PII 198
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595
NGDI S + + L + + VMIGRG+ +PW+FQE+K+
Sbjct: 199 ANGDITSPQKAKDVLDYTGA-DAVMIGRGSFGRPWLFQELKQ 239
>sp|Q9HUW1|DUSB_PSEAE tRNA-dihydrouridine synthase B OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dusB
PE=3 SV=1
Length = 332
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 131/336 (38%), Gaps = 111/336 (33%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVA-TELLKSSPQEWALIKRHESED-LFG 317
+L L+P+ V + PFR+LC++ GA + SEM + L S LI H+ ED
Sbjct: 14 RLILAPMAGVTDRPFRQLCRRLGAGMVVSEMVTSDVRLWNSRKSRLRLI--HDGEDEPRS 71
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377
VQ+ G +P +L + Q E + +D+N+GCP + + + +GS LL+
Sbjct: 72 VQIAGGDPAMLAEAAQRNVE-LGAQIIDINMGCPAKKVCNKAAGSALLR----------- 119
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
+E +V A IL +V+ ++
Sbjct: 120 -------------DEALV---------------------------AEILDAVVRAVD--- 136
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
+P+T+K RTG +DN G + +HGRTR YT +A+++ I Q
Sbjct: 137 -VPVTLKIRTGWDRDNRNGVTVAKLAEQAGIQALAVHGRTRADLYTGEAEYETIAAIKQA 195
Query: 498 CSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557
S P++ NGD
Sbjct: 196 VS--------------------------------------------------IPVFANGD 205
Query: 558 ILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
I S E + ++++ + ++IGR A +PWIF+EI
Sbjct: 206 IDSPEKARKVIEQT-GVDALLIGRAAQGRPWIFREI 240
>sp|Q87KU1|DUSB_VIBPA tRNA-dihydrouridine synthase B OS=Vibrio parahaemolyticus serotype
O3:K6 (strain RIMD 2210633) GN=dusB PE=3 SV=2
Length = 322
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/333 (23%), Positives = 126/333 (37%), Gaps = 107/333 (32%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L ++P+ V + PFR LC ++GA + SEM + ++P+ W K +
Sbjct: 12 LIVAPMAGVTDRPFRELCLRYGAGMAVSEM------MSANPKLWKTSKSKQ--------- 56
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP 380
+++ SG + VQ+ G++P
Sbjct: 57 --------------------------------RMVHEGESG--------IRSVQIAGSDP 76
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP 440
++ Q E +D+N+GCP + + K+ +GS LLQ I++ ++ + +P
Sbjct: 77 QLMADAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLQYPTIIEEILKAVVNAVDVP 135
Query: 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500
+T+KTRTG DN D G + LHGRT+ Y +A++D I+ + S
Sbjct: 136 VTLKTRTGWDTDNKNCVQIAKLAEDCGIQALALHGRTKACMYKGEAEYDSIKAVKEAIS- 194
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
P+ NGDI S
Sbjct: 195 -------------------------------------------------IPVIANGDIDS 205
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
E L+ + + +MIGR A +PWIFQEI
Sbjct: 206 PEKAKFVLEYTGA-DALMIGRPAQGRPWIFQEI 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,519,363
Number of Sequences: 539616
Number of extensions: 10565854
Number of successful extensions: 29079
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 144
Number of HSP's that attempted gapping in prelim test: 27886
Number of HSP's gapped (non-prelim): 827
length of query: 611
length of database: 191,569,459
effective HSP length: 123
effective length of query: 488
effective length of database: 125,196,691
effective search space: 61095985208
effective search space used: 61095985208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)