Query psy9514
Match_columns 611
No_of_seqs 400 out of 2140
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 21:34:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2333|consensus 100.0 6E-113 1E-117 895.4 29.9 489 2-605 12-510 (614)
2 COG0042 tRNA-dihydrouridine sy 100.0 6.5E-49 1.4E-53 413.6 23.5 238 250-593 2-241 (323)
3 TIGR00742 yjbN tRNA dihydrouri 100.0 1.4E-47 3.1E-52 402.6 25.8 234 259-595 1-238 (318)
4 PF01207 Dus: Dihydrouridine s 100.0 1.4E-47 3.1E-52 402.1 17.0 224 262-592 1-225 (309)
5 PRK10415 tRNA-dihydrouridine s 100.0 1.1E-45 2.3E-50 389.8 25.8 238 251-595 2-239 (321)
6 PRK10550 tRNA-dihydrouridine s 100.0 1.8E-45 4E-50 385.9 25.2 236 260-597 2-241 (312)
7 PRK11815 tRNA-dihydrouridine s 100.0 4.3E-44 9.3E-49 379.4 26.0 242 254-598 6-251 (333)
8 KOG2335|consensus 100.0 1.2E-44 2.7E-49 374.2 19.9 224 262-592 22-245 (358)
9 TIGR00737 nifR3_yhdG putative 100.0 1.5E-43 3.3E-48 373.6 26.0 237 252-595 1-237 (319)
10 cd02801 DUS_like_FMN Dihydrour 100.0 1.9E-41 4.1E-46 340.5 25.0 230 260-597 1-230 (231)
11 cd04734 OYE_like_3_FMN Old yel 100.0 8.9E-37 1.9E-41 324.9 22.3 299 247-605 2-340 (343)
12 PRK13523 NADPH dehydrogenase N 100.0 2.6E-35 5.7E-40 312.4 19.4 294 246-608 3-336 (337)
13 cd02930 DCR_FMN 2,4-dienoyl-Co 100.0 7.4E-35 1.6E-39 311.5 19.0 293 247-605 2-331 (353)
14 cd02929 TMADH_HD_FMN Trimethyl 100.0 1.8E-34 3.8E-39 310.1 20.7 298 246-605 8-344 (370)
15 cd02911 arch_FMN Archeal FMN-b 100.0 2.6E-34 5.6E-39 290.3 19.5 225 260-595 1-233 (233)
16 cd02931 ER_like_FMN Enoate red 100.0 4.4E-34 9.6E-39 308.2 22.0 298 247-605 2-360 (382)
17 cd04735 OYE_like_4_FMN Old yel 100.0 3.3E-34 7.2E-39 306.4 18.8 291 247-604 2-337 (353)
18 cd04733 OYE_like_2_FMN Old yel 100.0 1.8E-33 4E-38 299.1 20.2 291 247-596 2-338 (338)
19 COG1902 NemA NADH:flavin oxido 100.0 5.2E-33 1.1E-37 296.1 21.4 300 246-607 6-345 (363)
20 cd04747 OYE_like_5_FMN Old yel 100.0 1.4E-32 3.1E-37 293.4 21.2 290 247-605 2-353 (361)
21 cd02933 OYE_like_FMN Old yello 100.0 4.9E-32 1.1E-36 287.8 21.9 288 247-601 3-335 (338)
22 cd02803 OYE_like_FMN_family Ol 100.0 2.8E-32 6.1E-37 288.3 19.2 289 247-596 1-327 (327)
23 PF00724 Oxidored_FMN: NADH:fl 100.0 2.4E-32 5.3E-37 290.8 15.5 300 247-600 3-341 (341)
24 cd02932 OYE_YqiM_FMN Old yello 100.0 1.6E-31 3.5E-36 284.0 20.5 289 247-595 2-335 (336)
25 PRK10605 N-ethylmaleimide redu 100.0 6.8E-31 1.5E-35 281.4 21.0 300 246-608 3-349 (362)
26 TIGR01037 pyrD_sub1_fam dihydr 100.0 3.9E-30 8.4E-35 269.2 23.9 272 250-597 3-280 (300)
27 PLN02411 12-oxophytodienoate r 100.0 8.8E-30 1.9E-34 275.3 21.7 303 246-602 12-364 (391)
28 KOG2334|consensus 100.0 3.2E-30 7E-35 269.4 16.1 248 252-592 4-254 (477)
29 PRK08255 salicylyl-CoA 5-hydro 100.0 7.1E-30 1.5E-34 297.8 18.4 292 246-596 399-733 (765)
30 cd04740 DHOD_1B_like Dihydroor 100.0 1.1E-27 2.4E-32 250.2 25.6 270 250-598 2-278 (296)
31 TIGR00736 nifR3_rel_arch TIM-b 100.0 4.2E-28 9.1E-33 243.6 17.8 161 367-586 66-226 (231)
32 cd02940 DHPD_FMN Dihydropyrimi 100.0 2.5E-27 5.5E-32 248.1 24.0 281 249-596 3-298 (299)
33 PRK07259 dihydroorotate dehydr 99.9 2.1E-26 4.5E-31 241.3 24.9 275 249-597 3-280 (301)
34 cd02810 DHOD_DHPD_FMN Dihydroo 99.9 4.5E-25 9.8E-30 229.6 26.7 279 251-596 2-289 (289)
35 PRK08318 dihydropyrimidine deh 99.9 1.9E-25 4.1E-30 244.3 23.4 193 368-596 99-299 (420)
36 cd04741 DHOD_1A_like Dihydroor 99.9 3.9E-24 8.5E-29 223.5 25.6 277 251-596 2-289 (294)
37 PRK05286 dihydroorotate dehydr 99.9 9.1E-23 2E-27 217.6 22.1 268 249-596 50-335 (344)
38 cd04738 DHOD_2_like Dihydrooro 99.9 1.6E-22 3.6E-27 214.3 23.8 268 249-596 40-326 (327)
39 cd04739 DHOD_like Dihydroorota 99.9 1.2E-21 2.5E-26 207.6 24.3 271 250-596 4-283 (325)
40 PRK07565 dihydroorotate dehydr 99.9 1.3E-20 2.7E-25 200.5 22.5 280 249-596 4-285 (334)
41 PLN02495 oxidoreductase, actin 99.8 7.9E-20 1.7E-24 196.3 23.3 193 368-596 113-316 (385)
42 PRK02506 dihydroorotate dehydr 99.8 2.9E-19 6.3E-24 188.1 21.1 276 249-597 3-288 (310)
43 COG0167 PyrD Dihydroorotate de 99.8 1.5E-18 3.2E-23 180.7 21.3 275 250-596 4-287 (310)
44 TIGR01036 pyrD_sub2 dihydrooro 99.8 2.9E-18 6.2E-23 182.3 22.1 268 249-596 47-334 (335)
45 PF01180 DHO_dh: Dihydroorotat 99.8 3.7E-18 8.1E-23 178.5 21.8 277 250-596 4-290 (295)
46 cd02809 alpha_hydroxyacid_oxid 99.8 3.1E-17 6.7E-22 172.1 20.0 201 249-586 55-262 (299)
47 TIGR01304 IMP_DH_rel_2 IMP deh 99.8 5.1E-17 1.1E-21 173.8 20.7 234 250-586 36-290 (369)
48 PLN02826 dihydroorotate dehydr 99.7 9.6E-16 2.1E-20 166.4 24.8 292 249-596 75-387 (409)
49 TIGR02151 IPP_isom_2 isopenten 99.6 1.8E-14 3.9E-19 153.3 19.3 249 250-596 45-304 (333)
50 PRK05437 isopentenyl pyrophosp 99.6 6.7E-14 1.4E-18 149.9 22.3 236 253-586 55-296 (352)
51 PRK14024 phosphoribosyl isomer 99.6 2.1E-14 4.5E-19 146.3 16.4 190 324-594 33-236 (241)
52 PRK04180 pyridoxal biosynthesi 99.6 1.2E-14 2.5E-19 148.7 12.8 169 392-587 34-241 (293)
53 PRK08649 inosine 5-monophospha 99.6 4.3E-14 9.4E-19 151.7 17.5 158 421-588 115-293 (368)
54 KOG0134|consensus 99.5 1.5E-14 3.3E-19 153.4 9.4 184 377-601 170-369 (400)
55 cd02811 IDI-2_FMN Isopentenyl- 99.5 1.9E-12 4E-17 137.6 21.7 165 377-586 126-290 (326)
56 cd04722 TIM_phosphate_binding 99.3 4.4E-10 9.6E-15 108.1 19.2 139 371-581 60-200 (200)
57 PF04131 NanE: Putative N-acet 99.2 1.2E-10 2.6E-15 112.8 14.2 151 428-591 22-183 (192)
58 cd00381 IMPDH IMPDH: The catal 99.2 6.9E-10 1.5E-14 118.0 20.7 201 254-588 30-234 (325)
59 PRK00748 1-(5-phosphoribosyl)- 99.2 8.6E-11 1.9E-15 118.6 12.2 118 415-586 102-226 (233)
60 cd04730 NPD_like 2-Nitropropan 99.2 1.1E-09 2.4E-14 110.6 19.1 191 258-589 2-194 (236)
61 PRK01033 imidazole glycerol ph 99.2 4.2E-10 9.1E-15 115.9 15.0 156 371-586 75-232 (258)
62 COG3010 NanE Putative N-acetyl 99.1 1.9E-09 4.1E-14 104.9 17.1 149 429-588 57-216 (229)
63 cd04732 HisA HisA. Phosphorib 99.1 4.4E-10 9.5E-15 113.4 12.9 150 371-593 74-232 (234)
64 cd04731 HisF The cyclase subun 99.1 1.1E-09 2.4E-14 111.5 14.5 144 379-593 82-236 (243)
65 PRK13585 1-(5-phosphoribosyl)- 99.1 1.1E-09 2.5E-14 111.1 13.8 153 371-595 77-237 (241)
66 TIGR00735 hisF imidazoleglycer 99.1 1.5E-09 3.2E-14 111.6 13.8 152 371-593 75-242 (254)
67 TIGR03572 WbuZ glycosyl amidat 99.1 2.6E-09 5.5E-14 108.1 14.4 115 416-583 103-230 (232)
68 PRK02083 imidazole glycerol ph 99.0 4.1E-09 8.8E-14 108.1 13.9 150 373-593 77-240 (253)
69 KOG2333|consensus 99.0 9.6E-10 2.1E-14 117.9 9.2 167 319-544 273-448 (614)
70 PRK05458 guanosine 5'-monophos 99.0 3.4E-08 7.4E-13 104.6 20.4 136 379-584 95-234 (326)
71 cd04727 pdxS PdxS is a subunit 99.0 7.2E-09 1.6E-13 106.2 14.1 147 414-585 45-230 (283)
72 TIGR00007 phosphoribosylformim 99.0 6.7E-09 1.4E-13 104.8 13.1 142 371-586 73-224 (230)
73 TIGR03151 enACPred_II putative 99.0 5.3E-08 1.1E-12 102.8 20.0 98 428-587 100-197 (307)
74 TIGR02708 L_lactate_ox L-lacta 98.9 8.3E-08 1.8E-12 103.1 20.0 99 428-585 218-317 (367)
75 TIGR00343 pyridoxal 5'-phospha 98.9 3.9E-08 8.5E-13 100.9 14.4 150 413-588 46-238 (287)
76 cd04737 LOX_like_FMN L-Lactate 98.9 7.5E-08 1.6E-12 103.2 17.2 104 425-587 208-312 (351)
77 TIGR01306 GMP_reduct_2 guanosi 98.9 1.7E-07 3.7E-12 99.0 19.3 203 251-584 27-231 (321)
78 COG0106 HisA Phosphoribosylfor 98.8 5.1E-08 1.1E-12 98.2 14.5 161 367-593 72-234 (241)
79 cd00331 IGPS Indole-3-glycerol 98.8 2.3E-07 4.9E-12 92.9 17.8 147 428-594 62-215 (217)
80 COG0042 tRNA-dihydrouridine sy 98.8 9E-09 2E-13 109.3 7.5 149 367-595 65-218 (323)
81 cd04729 NanE N-acetylmannosami 98.8 3.2E-07 7E-12 92.1 17.9 159 428-591 50-216 (219)
82 PRK13125 trpA tryptophan synth 98.7 6.4E-07 1.4E-11 91.6 17.9 188 379-585 16-219 (244)
83 PRK02083 imidazole glycerol ph 98.7 6.8E-08 1.5E-12 99.1 10.6 89 455-596 31-119 (253)
84 PRK00278 trpC indole-3-glycero 98.7 8.3E-07 1.8E-11 91.7 18.0 165 394-593 82-253 (260)
85 cd04731 HisF The cyclase subun 98.7 8.1E-08 1.7E-12 97.8 10.5 89 455-596 28-116 (243)
86 PLN02446 (5-phosphoribosyl)-5- 98.7 3.9E-07 8.5E-12 93.5 15.1 199 323-592 43-252 (262)
87 cd02922 FCB2_FMN Flavocytochro 98.7 1.6E-06 3.4E-11 93.0 20.0 107 423-588 198-308 (344)
88 PRK01130 N-acetylmannosamine-6 98.6 1.1E-06 2.3E-11 88.4 17.0 157 427-592 45-213 (221)
89 TIGR01304 IMP_DH_rel_2 IMP deh 98.6 2.7E-07 5.8E-12 99.4 10.7 102 453-584 118-220 (369)
90 cd04732 HisA HisA. Phosphorib 98.6 5.7E-07 1.2E-11 90.8 11.9 89 454-596 29-118 (234)
91 PRK13587 1-(5-phosphoribosyl)- 98.5 1.6E-06 3.5E-11 88.2 15.1 151 368-585 74-226 (234)
92 TIGR00735 hisF imidazoleglycer 98.5 5.1E-07 1.1E-11 92.8 10.6 88 455-595 31-118 (254)
93 PRK14114 1-(5-phosphoribosyl)- 98.5 2.8E-06 6E-11 86.8 15.5 194 321-593 28-236 (241)
94 PF00977 His_biosynth: Histidi 98.5 9.3E-07 2E-11 89.6 11.9 190 321-586 27-226 (229)
95 cd04728 ThiG Thiazole synthase 98.4 2.5E-05 5.4E-10 79.1 20.1 140 379-589 74-215 (248)
96 PRK06843 inosine 5-monophospha 98.4 9.2E-06 2E-10 88.4 18.1 136 379-585 151-290 (404)
97 KOG1799|consensus 98.4 1.3E-07 2.8E-12 98.3 3.3 174 378-587 215-392 (471)
98 KOG1677|consensus 98.4 1.4E-07 3.1E-12 100.4 3.7 61 72-135 130-199 (332)
99 KOG1436|consensus 98.4 4E-06 8.7E-11 86.6 13.4 181 371-596 181-377 (398)
100 PRK08649 inosine 5-monophospha 98.4 1.4E-06 2.9E-11 94.2 10.5 101 453-583 117-218 (368)
101 TIGR01163 rpe ribulose-phospha 98.4 1.7E-05 3.6E-10 78.5 17.0 190 373-594 3-207 (210)
102 PF00478 IMPDH: IMP dehydrogen 98.3 1.2E-05 2.6E-10 86.0 16.3 107 424-583 134-243 (352)
103 PRK00208 thiG thiazole synthas 98.3 5.5E-05 1.2E-09 76.8 19.5 140 379-589 74-215 (250)
104 TIGR01305 GMP_reduct_1 guanosi 98.3 5.5E-05 1.2E-09 80.0 20.0 139 380-586 106-246 (343)
105 TIGR01919 hisA-trpF 1-(5-phosp 98.3 8.2E-06 1.8E-10 83.5 13.5 162 369-593 73-238 (243)
106 PF01070 FMN_dh: FMN-dependent 98.3 3.7E-05 8E-10 82.9 17.5 104 423-585 210-314 (356)
107 cd00945 Aldolase_Class_I Class 98.2 3.9E-05 8.4E-10 74.5 16.2 146 369-580 49-201 (201)
108 cd02808 GltS_FMN Glutamate syn 98.2 1.1E-05 2.4E-10 88.1 12.9 117 421-585 196-319 (392)
109 TIGR02129 hisA_euk phosphoribo 98.2 2.1E-05 4.6E-10 80.6 13.4 74 507-585 162-237 (253)
110 TIGR00262 trpA tryptophan synt 98.2 6.5E-05 1.4E-09 77.5 16.8 187 379-585 22-232 (256)
111 cd04723 HisA_HisF Phosphoribos 98.2 6.4E-05 1.4E-09 76.4 16.2 57 533-592 174-230 (233)
112 cd03332 LMO_FMN L-Lactate 2-mo 98.2 9.5E-05 2.1E-09 80.3 18.4 250 250-584 77-341 (383)
113 cd03319 L-Ala-DL-Glu_epimerase 98.1 6.1E-05 1.3E-09 79.7 16.0 138 367-582 122-260 (316)
114 PLN02979 glycolate oxidase 98.1 0.00016 3.4E-09 77.7 18.5 100 427-585 212-312 (366)
115 PRK13586 1-(5-phosphoribosyl)- 98.1 5.2E-05 1.1E-09 77.1 13.0 147 372-586 75-224 (232)
116 TIGR01302 IMP_dehydrog inosine 98.0 7.1E-05 1.5E-09 83.3 15.0 142 379-590 222-366 (450)
117 cd04726 KGPDC_HPS 3-Keto-L-gul 98.0 0.00038 8.2E-09 68.6 18.6 179 378-593 10-199 (202)
118 cd00429 RPE Ribulose-5-phospha 98.0 0.0002 4.3E-09 70.8 16.6 191 372-594 3-208 (211)
119 KOG2334|consensus 98.0 1.2E-05 2.5E-10 86.2 7.9 131 402-592 293-423 (477)
120 PLN02535 glycolate oxidase 98.0 2.6E-05 5.7E-10 84.0 10.8 107 423-588 208-315 (364)
121 TIGR00736 nifR3_rel_arch TIM-b 98.0 0.0001 2.2E-09 74.9 14.2 138 312-473 66-219 (231)
122 PF03060 NMO: Nitronate monoox 98.0 0.00037 8E-09 74.5 19.3 49 537-588 179-227 (330)
123 TIGR03128 RuMP_HxlA 3-hexulose 98.0 0.0004 8.6E-09 68.8 18.2 181 377-593 8-199 (206)
124 PLN02493 probable peroxisomal 98.0 0.00027 5.8E-09 76.3 17.9 99 428-585 214-313 (367)
125 TIGR03572 WbuZ glycosyl amidat 98.0 3.6E-05 7.9E-10 77.8 10.6 88 455-595 31-118 (232)
126 cd04724 Tryptophan_synthase_al 98.0 0.0003 6.4E-09 72.0 17.2 187 379-584 12-219 (242)
127 PRK05096 guanosine 5'-monophos 98.0 0.00055 1.2E-08 72.5 18.8 138 379-585 106-246 (346)
128 PRK00748 1-(5-phosphoribosyl)- 98.0 5.9E-05 1.3E-09 76.2 11.3 60 534-596 60-119 (233)
129 PRK04128 1-(5-phosphoribosyl)- 98.0 0.00012 2.7E-09 74.2 13.6 78 507-593 147-224 (228)
130 PTZ00314 inosine-5'-monophosph 98.0 0.00014 3.1E-09 81.7 15.4 139 376-585 236-378 (495)
131 PF01645 Glu_synthase: Conserv 97.9 8.3E-05 1.8E-09 80.2 12.7 237 253-585 60-308 (368)
132 PRK13585 1-(5-phosphoribosyl)- 97.9 6.9E-05 1.5E-09 76.1 11.6 60 534-596 62-121 (241)
133 cd04736 MDH_FMN Mandelate dehy 97.9 6.2E-05 1.3E-09 81.1 10.9 256 251-585 57-323 (361)
134 TIGR01303 IMP_DH_rel_1 IMP deh 97.9 0.00013 2.8E-09 81.6 13.7 124 394-583 236-360 (475)
135 TIGR00734 hisAF_rel hisA/hisF 97.9 0.00035 7.5E-09 70.6 14.7 67 514-585 152-218 (221)
136 PRK05581 ribulose-phosphate 3- 97.8 0.0008 1.7E-08 67.1 16.4 192 371-594 6-212 (220)
137 PRK04128 1-(5-phosphoribosyl)- 97.8 0.00013 2.7E-09 74.1 10.6 57 535-595 60-116 (228)
138 COG5063 CTH1 CCCH-type Zn-fing 97.8 8.9E-06 1.9E-10 83.3 2.1 60 74-136 230-297 (351)
139 PRK11197 lldD L-lactate dehydr 97.8 0.00011 2.3E-09 79.8 10.2 99 428-585 235-334 (381)
140 PLN02274 inosine-5'-monophosph 97.8 0.00017 3.7E-09 81.2 12.1 124 455-585 248-385 (505)
141 PRK00507 deoxyribose-phosphate 97.8 0.00044 9.6E-09 69.8 13.7 121 394-582 86-210 (221)
142 KOG2335|consensus 97.7 3.8E-05 8.1E-10 81.3 5.8 110 436-591 105-219 (358)
143 cd03316 MR_like Mandelate race 97.7 0.00062 1.3E-08 73.2 15.2 143 368-580 126-270 (357)
144 PLN02617 imidazole glycerol ph 97.7 0.00062 1.4E-08 77.1 15.4 152 426-580 302-512 (538)
145 cd00405 PRAI Phosphoribosylant 97.7 0.00063 1.4E-08 67.5 13.8 118 457-588 63-189 (203)
146 COG0269 SgbH 3-hexulose-6-phos 97.7 0.0023 4.9E-08 63.9 17.1 183 372-590 5-202 (217)
147 PRK07107 inosine 5-monophospha 97.7 0.00044 9.5E-09 77.9 13.7 126 394-585 253-386 (502)
148 cd02940 DHPD_FMN Dihydropyrimi 97.7 0.00068 1.5E-08 71.5 14.4 177 284-474 71-281 (299)
149 PTZ00170 D-ribulose-5-phosphat 97.7 0.00071 1.5E-08 68.7 13.9 186 371-589 9-210 (228)
150 PRK05567 inosine 5'-monophosph 97.7 0.00075 1.6E-08 75.9 15.0 109 425-587 255-366 (486)
151 PRK09140 2-dehydro-3-deoxy-6-p 97.6 0.0048 1E-07 61.7 18.9 174 369-588 10-187 (206)
152 PF05690 ThiG: Thiazole biosyn 97.6 0.0062 1.3E-07 61.5 19.4 138 379-587 74-211 (247)
153 PRK14024 phosphoribosyl isomer 97.6 0.0004 8.6E-09 71.0 11.2 60 534-596 61-120 (241)
154 PRK01033 imidazole glycerol ph 97.6 0.00044 9.6E-09 71.4 11.5 59 534-595 60-118 (258)
155 PF00218 IGPS: Indole-3-glycer 97.6 0.0018 3.9E-08 66.7 15.7 168 393-595 79-253 (254)
156 CHL00200 trpA tryptophan synth 97.6 0.0013 2.8E-08 68.3 14.6 185 379-584 27-235 (263)
157 PF00642 zf-CCCH: Zinc finger 97.6 1.7E-05 3.7E-10 53.4 0.3 24 74-100 3-26 (27)
158 PRK07807 inosine 5-monophospha 97.6 0.0004 8.6E-09 77.8 11.2 126 455-590 227-369 (479)
159 cd00452 KDPG_aldolase KDPG and 97.6 0.0057 1.2E-07 60.2 17.9 168 370-584 5-175 (190)
160 TIGR00259 thylakoid_BtpA membr 97.6 0.0044 9.6E-08 63.9 17.6 148 370-584 81-231 (257)
161 COG0107 HisF Imidazoleglycerol 97.5 0.00024 5.1E-09 71.1 7.9 87 505-595 32-118 (256)
162 KOG1606|consensus 97.5 0.00024 5.1E-09 69.9 7.7 154 414-594 58-252 (296)
163 CHL00162 thiG thiamin biosynth 97.5 0.021 4.7E-07 58.3 21.7 54 533-589 174-227 (267)
164 PLN02334 ribulose-phosphate 3- 97.5 0.0018 4E-08 65.5 14.2 55 537-594 162-216 (229)
165 PRK13111 trpA tryptophan synth 97.5 0.0061 1.3E-07 63.1 17.7 184 379-584 24-232 (258)
166 TIGR00007 phosphoribosylformim 97.5 0.001 2.3E-08 67.0 11.9 60 535-597 59-118 (230)
167 PRK13307 bifunctional formalde 97.5 0.003 6.5E-08 68.9 16.0 142 427-589 214-367 (391)
168 PRK00043 thiE thiamine-phospha 97.5 0.0072 1.6E-07 59.8 17.5 81 510-593 118-201 (212)
169 PLN02591 tryptophan synthase 97.5 0.0043 9.2E-08 63.9 16.1 185 379-585 14-223 (250)
170 cd03315 MLE_like Muconate lact 97.5 0.0058 1.3E-07 63.1 17.2 134 369-580 75-210 (265)
171 PF03437 BtpA: BtpA family; I 97.5 0.0032 6.9E-08 64.8 15.0 154 369-592 81-239 (254)
172 PRK13587 1-(5-phosphoribosyl)- 97.5 0.0008 1.7E-08 68.6 10.6 60 534-596 62-121 (234)
173 TIGR01769 GGGP geranylgeranylg 97.4 0.0069 1.5E-07 60.5 16.8 169 381-580 11-205 (205)
174 cd00564 TMP_TenI Thiamine mono 97.4 0.01 2.2E-07 57.4 17.8 82 509-594 108-192 (196)
175 PRK13957 indole-3-glycerol-pho 97.4 0.0077 1.7E-07 61.8 17.5 166 393-594 72-244 (247)
176 COG2070 Dioxygenases related t 97.4 0.0021 4.6E-08 68.9 13.3 48 537-586 172-219 (336)
177 PRK07028 bifunctional hexulose 97.3 0.01 2.2E-07 65.8 18.5 178 379-592 14-202 (430)
178 PF00977 His_biosynth: Histidi 97.3 0.00068 1.5E-08 68.8 8.1 59 535-596 60-118 (229)
179 PRK07259 dihydroorotate dehydr 97.3 0.0034 7.3E-08 66.1 13.6 153 312-474 90-263 (301)
180 PRK04302 triosephosphate isome 97.3 0.004 8.7E-08 62.8 13.0 44 548-593 172-215 (223)
181 cd04741 DHOD_1A_like Dihydroor 97.3 0.0032 7E-08 66.3 12.8 154 312-475 90-273 (294)
182 PRK06552 keto-hydroxyglutarate 97.2 0.022 4.9E-07 57.3 18.0 167 369-584 13-187 (213)
183 TIGR02129 hisA_euk phosphoribo 97.2 0.0014 3.1E-08 67.3 9.5 57 536-596 64-124 (253)
184 cd04740 DHOD_1B_like Dihydroor 97.2 0.0074 1.6E-07 63.3 14.8 155 310-474 86-260 (296)
185 PRK14114 1-(5-phosphoribosyl)- 97.2 0.0026 5.6E-08 65.2 10.9 57 534-594 60-116 (241)
186 PRK08883 ribulose-phosphate 3- 97.2 0.02 4.3E-07 57.9 17.1 185 373-593 4-208 (220)
187 COG0214 SNZ1 Pyridoxine biosyn 97.2 0.0033 7.3E-08 62.9 10.8 153 413-585 56-242 (296)
188 cd02810 DHOD_DHPD_FMN Dihydroo 97.1 0.0044 9.5E-08 64.7 12.1 153 312-474 97-272 (289)
189 PRK07695 transcriptional regul 97.1 0.0026 5.5E-08 63.1 9.8 82 509-594 108-191 (201)
190 TIGR01182 eda Entner-Doudoroff 97.1 0.022 4.7E-07 57.0 16.3 170 369-587 8-183 (204)
191 cd04743 NPD_PKS 2-Nitropropane 97.1 0.0076 1.6E-07 64.1 13.8 153 422-589 38-211 (320)
192 COG0107 HisF Imidazoleglycerol 97.1 0.0043 9.3E-08 62.3 11.0 71 507-580 159-229 (256)
193 PF04481 DUF561: Protein of un 97.1 0.018 3.8E-07 57.5 14.9 179 337-583 37-217 (242)
194 TIGR00693 thiE thiamine-phosph 97.1 0.018 3.8E-07 56.5 15.0 78 511-592 111-192 (196)
195 TIGR01919 hisA-trpF 1-(5-phosp 97.0 0.0049 1.1E-07 63.2 11.0 59 534-595 60-118 (243)
196 TIGR01949 AroFGH_arch predicte 97.0 0.018 3.9E-07 59.4 15.0 56 536-594 180-241 (258)
197 PRK08318 dihydropyrimidine deh 97.0 0.01 2.2E-07 65.5 14.0 211 249-475 5-283 (420)
198 PRK13586 1-(5-phosphoribosyl)- 97.0 0.0061 1.3E-07 62.1 11.2 59 535-596 60-118 (232)
199 cd02812 PcrB_like PcrB_like pr 97.0 0.0048 1E-07 62.2 10.3 58 535-594 161-218 (219)
200 PRK11840 bifunctional sulfur c 97.0 0.14 3.1E-06 54.4 21.4 52 536-590 237-288 (326)
201 COG2022 ThiG Uncharacterized e 97.0 0.11 2.3E-06 52.5 19.3 135 379-585 81-216 (262)
202 COG1304 idi Isopentenyl diphos 97.0 0.0012 2.5E-08 71.3 6.1 107 420-585 200-307 (360)
203 TIGR00126 deoC deoxyribose-pho 96.9 0.017 3.6E-07 58.1 13.4 121 394-579 82-203 (211)
204 TIGR01768 GGGP-family geranylg 96.9 0.0023 4.9E-08 64.7 7.2 62 531-594 161-222 (223)
205 KOG0538|consensus 96.9 0.0057 1.2E-07 63.7 9.7 99 427-585 212-312 (363)
206 PLN02446 (5-phosphoribosyl)-5- 96.8 0.0053 1.2E-07 63.4 9.4 57 535-596 71-131 (262)
207 PF00290 Trp_syntA: Tryptophan 96.8 0.012 2.5E-07 61.0 11.9 185 379-585 22-231 (259)
208 TIGR00742 yjbN tRNA dihydrouri 96.8 0.0012 2.6E-08 70.3 4.5 139 421-595 64-215 (318)
209 COG0106 HisA Phosphoribosylfor 96.8 0.0088 1.9E-07 60.8 10.4 61 534-597 61-121 (241)
210 PRK13802 bifunctional indole-3 96.8 0.032 6.9E-07 65.2 16.3 166 394-594 82-254 (695)
211 COG5063 CTH1 CCCH-type Zn-fing 96.8 0.00086 1.9E-08 69.1 3.0 60 73-135 273-336 (351)
212 PRK05283 deoxyribose-phosphate 96.8 0.0083 1.8E-07 61.8 10.1 118 394-571 95-217 (257)
213 PF01207 Dus: Dihydrouridine s 96.8 0.00054 1.2E-08 72.6 1.5 98 451-594 105-202 (309)
214 PRK05718 keto-hydroxyglutarate 96.7 0.07 1.5E-06 53.7 16.2 174 369-588 15-190 (212)
215 cd04723 HisA_HisF Phosphoribos 96.7 0.011 2.3E-07 60.2 10.6 87 455-596 36-122 (233)
216 PLN02617 imidazole glycerol ph 96.6 0.0082 1.8E-07 68.2 9.9 58 535-595 301-381 (538)
217 PLN02460 indole-3-glycerol-pho 96.6 0.035 7.6E-07 59.3 13.8 148 428-595 170-332 (338)
218 smart00356 ZnF_C3H1 zinc finge 96.6 0.0015 3.2E-08 43.3 2.2 23 74-100 4-26 (27)
219 PRK07226 fructose-bisphosphate 96.6 0.043 9.3E-07 57.0 13.8 54 536-592 184-243 (267)
220 cd00959 DeoC 2-deoxyribose-5-p 96.5 0.055 1.2E-06 53.8 14.1 118 394-576 81-199 (203)
221 cd00958 DhnA Class I fructose- 96.5 0.052 1.1E-06 54.9 14.2 56 536-594 167-228 (235)
222 COG0134 TrpC Indole-3-glycerol 96.5 0.0096 2.1E-07 61.1 8.7 76 514-594 174-250 (254)
223 COG0434 SgcQ Predicted TIM-bar 96.5 0.12 2.5E-06 52.5 16.0 151 369-587 86-239 (263)
224 PRK07455 keto-hydroxyglutarate 96.5 0.11 2.4E-06 51.2 15.8 169 370-585 13-185 (187)
225 PRK04169 geranylgeranylglycery 96.5 0.0075 1.6E-07 61.4 7.6 62 531-595 166-229 (232)
226 cd04739 DHOD_like Dihydroorota 96.5 0.048 1E-06 58.3 14.0 150 313-474 99-266 (325)
227 PRK06015 keto-hydroxyglutarate 96.5 0.17 3.6E-06 50.6 16.9 168 370-587 5-178 (201)
228 COG0159 TrpA Tryptophan syntha 96.4 0.17 3.7E-06 52.4 16.8 186 379-584 29-237 (265)
229 PRK10550 tRNA-dihydrouridine s 96.4 0.025 5.3E-07 60.2 10.9 149 309-476 58-225 (312)
230 PF00642 zf-CCCH: Zinc finger 96.3 0.00092 2E-08 45.0 -0.1 23 113-135 3-25 (27)
231 cd04742 NPD_FabD 2-Nitropropan 96.3 0.091 2E-06 57.9 15.1 161 422-588 49-256 (418)
232 PF01081 Aldolase: KDPG and KH 96.3 0.032 7E-07 55.4 10.6 168 369-585 8-181 (196)
233 TIGR02814 pfaD_fam PfaD family 96.3 0.1 2.2E-06 57.9 15.4 158 422-587 54-260 (444)
234 PRK08005 epimerase; Validated 96.3 0.32 7E-06 48.9 17.6 187 371-593 3-204 (210)
235 PRK07114 keto-hydroxyglutarate 96.2 0.21 4.5E-06 50.6 16.2 172 369-587 15-195 (222)
236 PRK06512 thiamine-phosphate py 96.2 0.16 3.5E-06 51.4 15.3 79 512-594 127-206 (221)
237 cd04738 DHOD_2_like Dihydrooro 96.2 0.059 1.3E-06 57.7 12.6 153 312-475 127-310 (327)
238 cd04733 OYE_like_2_FMN Old yel 96.1 0.17 3.8E-06 54.2 16.0 140 326-473 149-321 (338)
239 PRK08745 ribulose-phosphate 3- 96.1 0.51 1.1E-05 47.9 18.3 184 371-590 6-209 (223)
240 PF01791 DeoC: DeoC/LacD famil 96.1 0.033 7.1E-07 56.6 9.7 128 394-585 88-235 (236)
241 PRK10415 tRNA-dihydrouridine s 96.1 0.035 7.6E-07 59.3 10.3 139 316-473 67-223 (321)
242 COG0352 ThiE Thiamine monophos 96.1 0.14 3E-06 51.6 13.9 135 431-595 58-201 (211)
243 TIGR00734 hisAF_rel hisA/hisF 96.1 0.038 8.1E-07 55.9 9.9 57 534-594 65-122 (221)
244 cd00377 ICL_PEPM Members of th 96.0 0.96 2.1E-05 46.4 20.2 94 379-476 82-182 (243)
245 COG0036 Rpe Pentose-5-phosphat 96.0 0.32 6.9E-06 49.0 15.9 190 370-595 5-212 (220)
246 PRK02615 thiamine-phosphate py 95.8 0.25 5.5E-06 53.3 15.5 78 510-591 254-333 (347)
247 PF02581 TMP-TENI: Thiamine mo 95.8 0.12 2.7E-06 50.2 12.2 106 462-583 67-180 (180)
248 PRK00230 orotidine 5'-phosphat 95.8 0.15 3.2E-06 51.9 13.1 48 427-477 43-90 (230)
249 PRK06806 fructose-bisphosphate 95.8 0.44 9.6E-06 50.0 16.8 70 512-588 162-238 (281)
250 PRK11750 gltB glutamate syntha 95.7 0.059 1.3E-06 66.9 11.4 116 422-585 979-1101(1485)
251 PRK11572 copper homeostasis pr 95.7 0.71 1.5E-05 47.5 17.4 177 373-578 4-196 (248)
252 PF00834 Ribul_P_3_epim: Ribul 95.6 0.32 6.9E-06 48.6 14.2 178 371-585 2-199 (201)
253 PRK13813 orotidine 5'-phosphat 95.6 0.14 3.1E-06 51.1 11.8 143 427-594 44-206 (215)
254 PRK09427 bifunctional indole-3 95.5 0.13 2.8E-06 57.5 12.2 147 428-595 100-253 (454)
255 PF01884 PcrB: PcrB family; I 95.4 0.021 4.7E-07 57.9 5.3 50 538-589 171-220 (230)
256 cd03329 MR_like_4 Mandelate ra 95.4 0.37 7.9E-06 52.3 15.0 78 379-471 143-220 (368)
257 PRK11815 tRNA-dihydrouridine s 95.3 0.04 8.7E-07 59.1 7.3 139 421-596 74-226 (333)
258 COG0274 DeoC Deoxyribose-phosp 95.3 0.43 9.3E-06 48.2 13.9 112 394-571 89-205 (228)
259 COG0069 GltB Glutamate synthas 95.3 0.12 2.5E-06 57.7 10.8 131 396-585 270-408 (485)
260 KOG2550|consensus 95.3 0.033 7.1E-07 60.2 6.2 116 458-586 254-388 (503)
261 cd00381 IMPDH IMPDH: The catal 95.3 0.16 3.5E-06 54.3 11.6 40 538-580 124-163 (325)
262 PRK14057 epimerase; Provisiona 95.2 1.1 2.4E-05 46.3 17.0 193 370-594 21-235 (254)
263 PF03932 CutC: CutC family; I 95.1 0.74 1.6E-05 46.0 14.7 178 372-577 2-196 (201)
264 TIGR00222 panB 3-methyl-2-oxob 95.1 1.1 2.4E-05 46.6 16.4 28 267-294 20-47 (263)
265 PRK07315 fructose-bisphosphate 95.1 1.1 2.4E-05 47.4 16.8 52 533-587 186-239 (293)
266 PRK03512 thiamine-phosphate py 95.1 0.17 3.7E-06 50.8 10.3 58 534-594 143-200 (211)
267 cd06556 ICL_KPHMT Members of t 95.0 0.41 8.9E-06 49.1 13.2 140 393-557 30-199 (240)
268 KOG1763|consensus 94.9 0.0072 1.6E-07 62.2 0.1 67 71-143 89-194 (343)
269 PLN02363 phosphoribosylanthran 94.9 1.2 2.6E-05 46.2 16.2 183 371-589 47-237 (256)
270 PRK00311 panB 3-methyl-2-oxobu 94.9 1.2 2.7E-05 46.3 16.3 25 267-291 20-44 (264)
271 cd03321 mandelate_racemase Man 94.8 0.62 1.3E-05 50.3 14.8 136 369-579 131-266 (355)
272 smart00356 ZnF_C3H1 zinc finge 94.8 0.016 3.6E-07 38.2 1.5 21 114-135 5-25 (27)
273 TIGR00737 nifR3_yhdG putative 94.8 0.2 4.3E-06 53.3 10.5 140 317-476 66-223 (319)
274 KOG2185|consensus 94.7 0.012 2.7E-07 62.9 1.2 34 69-106 135-168 (486)
275 PRK06801 hypothetical protein; 94.7 1.6 3.4E-05 46.0 16.8 70 513-586 166-239 (286)
276 PLN02424 ketopantoate hydroxym 94.7 1.3 2.9E-05 47.3 16.2 147 267-475 40-203 (332)
277 PRK01222 N-(5'-phosphoribosyl) 94.6 0.88 1.9E-05 45.7 14.0 177 372-587 4-190 (210)
278 COG0800 Eda 2-keto-3-deoxy-6-p 94.5 0.74 1.6E-05 46.2 13.1 166 368-582 12-183 (211)
279 COG0135 TrpF Phosphoribosylant 94.5 1.1 2.4E-05 44.9 14.5 177 373-587 4-190 (208)
280 TIGR01859 fruc_bis_ald_ fructo 94.5 0.79 1.7E-05 48.1 13.9 68 511-585 161-235 (282)
281 cd02911 arch_FMN Archeal FMN-b 94.4 0.2 4.3E-06 51.1 9.1 110 287-402 49-172 (233)
282 cd06557 KPHMT-like Ketopantoat 94.4 1.4 3.1E-05 45.6 15.3 25 267-291 17-41 (254)
283 PRK07565 dihydroorotate dehydr 94.4 0.58 1.2E-05 50.2 13.0 109 423-579 86-196 (334)
284 PRK08091 ribulose-phosphate 3- 94.3 3.1 6.7E-05 42.4 17.3 181 370-589 14-216 (228)
285 PRK05286 dihydroorotate dehydr 94.2 0.36 7.8E-06 52.0 11.1 152 312-474 136-318 (344)
286 cd00331 IGPS Indole-3-glycerol 94.2 0.28 6E-06 49.1 9.6 91 439-585 11-106 (217)
287 PF00697 PRAI: N-(5'phosphorib 94.2 0.2 4.4E-06 49.6 8.4 178 373-588 1-184 (197)
288 PRK09722 allulose-6-phosphate 94.2 3.5 7.6E-05 42.0 17.5 178 371-585 5-202 (229)
289 TIGR02320 PEP_mutase phosphoen 94.2 1.5 3.3E-05 46.1 15.3 97 378-475 89-190 (285)
290 PTZ00314 inosine-5'-monophosph 94.1 0.2 4.3E-06 56.7 9.2 41 537-580 270-310 (495)
291 PF00478 IMPDH: IMP dehydrogen 94.1 0.38 8.2E-06 52.0 10.7 85 439-582 95-179 (352)
292 PRK13523 NADPH dehydrogenase N 93.9 0.95 2.1E-05 48.7 13.4 128 328-473 144-304 (337)
293 PRK05848 nicotinate-nucleotide 93.6 0.65 1.4E-05 48.6 11.1 34 548-584 228-261 (273)
294 cd03324 rTSbeta_L-fuconate_deh 93.5 2.2 4.8E-05 47.3 15.9 78 377-471 194-271 (415)
295 PRK06843 inosine 5-monophospha 93.5 0.32 6.9E-06 53.5 9.2 72 454-581 152-223 (404)
296 cd04734 OYE_like_3_FMN Old yel 93.4 2.4 5.2E-05 45.7 15.6 91 378-477 225-317 (343)
297 KOG1677|consensus 93.4 0.061 1.3E-06 57.4 3.3 64 75-143 87-161 (332)
298 PRK13958 N-(5'-phosphoribosyl) 93.3 2.4 5.1E-05 42.5 14.3 172 373-583 3-185 (207)
299 TIGR01302 IMP_dehydrog inosine 93.3 0.3 6.6E-06 54.6 8.7 42 536-580 252-293 (450)
300 PF02548 Pantoate_transf: Keto 93.2 1.9 4.1E-05 44.7 13.6 147 266-475 20-183 (261)
301 PRK08999 hypothetical protein; 93.1 0.87 1.9E-05 48.0 11.6 70 510-583 240-311 (312)
302 PRK13306 ulaD 3-keto-L-gulonat 93.1 1.1 2.4E-05 45.2 11.6 144 427-589 44-200 (216)
303 KOG1595|consensus 93.1 0.064 1.4E-06 59.7 2.9 76 59-144 221-296 (528)
304 cd02933 OYE_like_FMN Old yello 93.0 1.9 4.2E-05 46.4 14.0 126 328-476 154-315 (338)
305 PRK05437 isopentenyl pyrophosp 92.9 1.7 3.6E-05 47.2 13.5 115 414-580 96-217 (352)
306 cd00377 ICL_PEPM Members of th 92.8 1.3 2.9E-05 45.4 12.0 81 393-477 27-107 (243)
307 COG1646 Predicted phosphate-bi 92.7 0.2 4.3E-06 50.7 5.6 61 531-596 176-236 (240)
308 PRK05458 guanosine 5'-monophos 92.6 1.5 3.2E-05 47.1 12.3 40 538-580 129-168 (326)
309 COG4948 L-alanine-DL-glutamate 92.3 3.4 7.3E-05 44.9 15.0 126 379-579 143-268 (372)
310 PRK09427 bifunctional indole-3 92.3 3.3 7.1E-05 46.5 15.0 171 372-587 258-436 (454)
311 PF01081 Aldolase: KDPG and KH 92.3 1.4 3.1E-05 43.8 10.9 90 440-594 9-98 (196)
312 PRK06015 keto-hydroxyglutarate 92.2 1.4 2.9E-05 44.1 10.7 91 439-594 4-94 (201)
313 cd00452 KDPG_aldolase KDPG and 92.2 2.4 5.2E-05 41.6 12.4 131 439-595 4-139 (190)
314 TIGR01182 eda Entner-Doudoroff 92.1 1.4 3E-05 44.1 10.8 92 439-595 8-99 (204)
315 PRK09140 2-dehydro-3-deoxy-6-p 92.1 1.2 2.6E-05 44.6 10.3 93 438-594 9-101 (206)
316 PRK06552 keto-hydroxyglutarate 92.0 1.4 3.1E-05 44.3 10.8 92 439-594 13-106 (213)
317 TIGR02317 prpB methylisocitrat 92.0 4.6 9.9E-05 42.6 14.9 91 380-475 87-182 (285)
318 cd03328 MR_like_3 Mandelate ra 92.0 3.4 7.3E-05 44.7 14.4 75 379-470 138-212 (352)
319 cd02932 OYE_YqiM_FMN Old yello 91.9 3.6 7.7E-05 44.1 14.5 131 328-473 156-319 (336)
320 TIGR02151 IPP_isom_2 isopenten 91.9 2.9 6.3E-05 44.9 13.7 115 414-580 89-210 (333)
321 PRK02506 dihydroorotate dehydr 91.8 1.3 2.7E-05 47.2 10.7 153 313-474 92-270 (310)
322 TIGR01303 IMP_DH_rel_1 IMP deh 91.7 0.61 1.3E-05 52.6 8.5 42 537-581 254-295 (475)
323 PRK12290 thiE thiamine-phospha 91.7 1 2.2E-05 49.9 10.0 43 549-594 364-406 (437)
324 TIGR02534 mucon_cyclo muconate 91.6 6.4 0.00014 42.7 16.2 61 394-471 156-218 (368)
325 PRK07107 inosine 5-monophospha 91.6 0.76 1.6E-05 52.1 9.2 42 538-581 272-313 (502)
326 PRK07428 nicotinate-nucleotide 91.4 2 4.4E-05 45.2 11.6 39 547-588 241-279 (288)
327 TIGR01037 pyrD_sub1_fam dihydr 91.0 1.6 3.5E-05 45.9 10.4 154 310-473 87-262 (300)
328 COG0413 PanB Ketopantoate hydr 90.9 9.2 0.0002 39.6 15.2 25 266-290 19-43 (268)
329 PRK14567 triosephosphate isome 90.9 0.76 1.7E-05 47.5 7.6 45 548-595 201-245 (253)
330 cd00956 Transaldolase_FSA Tran 90.9 6.5 0.00014 39.5 14.1 27 552-580 159-185 (211)
331 PRK05567 inosine 5'-monophosph 90.7 0.92 2E-05 51.3 8.8 41 537-580 257-297 (486)
332 cd03323 D-glucarate_dehydratas 90.5 5.9 0.00013 43.6 14.7 74 379-471 168-243 (395)
333 PF13714 PEP_mutase: Phosphoen 90.5 4.1 8.9E-05 41.8 12.5 138 376-584 80-223 (238)
334 COG0800 Eda 2-keto-3-deoxy-6-p 90.5 2.7 5.9E-05 42.2 10.8 78 439-578 13-90 (211)
335 PRK05718 keto-hydroxyglutarate 90.5 4.2 9.1E-05 41.0 12.4 92 439-595 15-106 (212)
336 cd00311 TIM Triosephosphate is 90.4 1.4 3.1E-05 45.3 9.1 43 549-594 199-241 (242)
337 TIGR01740 pyrF orotidine 5'-ph 90.4 6.8 0.00015 39.2 13.8 47 428-477 40-86 (213)
338 PRK14017 galactonate dehydrata 90.3 8.6 0.00019 42.0 15.7 96 369-472 114-209 (382)
339 KOG1040|consensus 90.3 0.23 5E-06 53.0 3.2 56 71-139 74-129 (325)
340 cd02929 TMADH_HD_FMN Trimethyl 90.0 6.6 0.00014 42.9 14.4 134 328-476 152-320 (370)
341 PF14608 zf-CCCH_2: Zinc finge 90.0 0.21 4.4E-06 30.9 1.5 12 88-99 7-18 (19)
342 COG0167 PyrD Dihydroorotate de 89.9 4.8 0.0001 42.9 12.8 150 315-475 98-271 (310)
343 PRK08185 hypothetical protein; 89.8 20 0.00044 37.8 17.2 70 512-585 158-233 (283)
344 cd03326 MR_like_1 Mandelate ra 89.8 9.5 0.00021 41.8 15.5 77 379-471 160-236 (385)
345 PLN02979 glycolate oxidase 89.8 4 8.7E-05 44.4 12.2 46 531-580 206-251 (366)
346 PRK11320 prpB 2-methylisocitra 89.8 13 0.00028 39.4 15.8 92 379-475 91-187 (292)
347 cd03322 rpsA The starvation se 89.8 9 0.0002 41.5 15.2 73 375-471 122-194 (361)
348 cd00408 DHDPS-like Dihydrodipi 89.8 12 0.00025 38.9 15.5 84 379-476 16-101 (281)
349 cd03325 D-galactonate_dehydrat 89.7 9.4 0.0002 41.2 15.2 96 369-472 113-208 (352)
350 PF00215 OMPdecase: Orotidine 89.7 12 0.00027 37.6 15.2 82 379-477 11-95 (226)
351 cd02809 alpha_hydroxyacid_oxid 89.7 4.8 0.0001 42.5 12.7 85 438-579 115-199 (299)
352 PLN02898 HMP-P kinase/thiamin- 89.6 1.9 4.1E-05 48.9 10.2 56 534-593 430-488 (502)
353 TIGR02319 CPEP_Pphonmut carbox 89.5 15 0.00033 38.9 16.0 93 377-475 89-186 (294)
354 cd03320 OSBS o-Succinylbenzoat 89.5 8.7 0.00019 39.6 14.2 85 370-471 74-158 (263)
355 PRK05096 guanosine 5'-monophos 89.3 3.5 7.6E-05 44.3 11.1 43 537-582 139-181 (346)
356 PRK15072 bifunctional D-altron 89.2 11 0.00024 41.6 15.5 96 376-472 124-238 (404)
357 PRK07114 keto-hydroxyglutarate 89.1 4.3 9.4E-05 41.2 11.3 93 439-596 15-111 (222)
358 PLN02535 glycolate oxidase 89.1 5.2 0.00011 43.6 12.5 45 532-580 207-251 (364)
359 TIGR01306 GMP_reduct_2 guanosi 89.1 4.5 9.7E-05 43.3 11.8 41 537-580 125-165 (321)
360 cd04725 OMP_decarboxylase_like 89.0 9 0.00019 38.5 13.5 146 427-593 39-213 (216)
361 PRK11320 prpB 2-methylisocitra 88.9 4.3 9.3E-05 42.9 11.4 53 423-476 63-115 (292)
362 PRK09517 multifunctional thiam 88.8 1.4 3.1E-05 52.5 8.8 74 515-591 127-205 (755)
363 PRK07998 gatY putative fructos 88.8 15 0.00032 38.7 15.4 48 535-585 186-234 (283)
364 cd01568 QPRTase_NadC Quinolina 88.8 3 6.6E-05 43.5 10.2 38 548-588 226-263 (269)
365 PRK07709 fructose-bisphosphate 88.7 22 0.00048 37.5 16.6 48 534-584 189-237 (285)
366 COG5252 Uncharacterized conser 88.7 0.12 2.7E-06 51.8 -0.2 37 71-111 82-118 (299)
367 TIGR01305 GMP_reduct_1 guanosi 88.6 4.7 0.0001 43.3 11.5 40 538-580 139-178 (343)
368 COG5152 Uncharacterized conser 88.4 0.26 5.6E-06 48.4 1.8 20 115-134 143-162 (259)
369 PRK08072 nicotinate-nucleotide 88.4 4.9 0.00011 42.1 11.5 43 538-583 220-263 (277)
370 cd04735 OYE_like_4_FMN Old yel 88.3 7.1 0.00015 42.2 13.1 29 377-406 231-259 (353)
371 cd03327 MR_like_2 Mandelate ra 88.3 12 0.00025 40.3 14.7 85 377-471 118-202 (341)
372 cd00945 Aldolase_Class_I Class 88.1 14 0.00031 35.3 14.0 72 379-475 11-86 (201)
373 PF01680 SOR_SNZ: SOR/SNZ fami 88.1 2.9 6.2E-05 40.9 8.6 51 414-475 51-101 (208)
374 PRK13957 indole-3-glycerol-pho 88.0 3 6.5E-05 43.0 9.4 57 535-594 89-145 (247)
375 cd04747 OYE_like_5_FMN Old yel 88.0 11 0.00024 41.1 14.2 104 327-444 145-286 (361)
376 TIGR00078 nadC nicotinate-nucl 88.0 6.2 0.00014 41.1 11.9 29 549-580 222-250 (265)
377 PRK00278 trpC indole-3-glycero 87.8 3.9 8.4E-05 42.4 10.2 103 438-596 49-156 (260)
378 TIGR01361 DAHP_synth_Bsub phos 87.7 8.9 0.00019 39.8 12.8 109 415-580 114-229 (260)
379 cd02811 IDI-2_FMN Isopentenyl- 87.5 5.9 0.00013 42.4 11.7 115 414-580 88-209 (326)
380 PRK12656 fructose-6-phosphate 87.3 13 0.00029 37.7 13.4 66 515-582 125-191 (222)
381 TIGR02321 Pphn_pyruv_hyd phosp 87.3 5.1 0.00011 42.3 10.9 54 422-476 59-112 (290)
382 TIGR02317 prpB methylisocitrat 87.1 7.1 0.00015 41.1 11.7 55 422-477 57-111 (285)
383 cd03318 MLE Muconate Lactonizi 87.0 26 0.00056 37.9 16.5 61 394-471 156-219 (365)
384 PF13714 PEP_mutase: Phosphoen 87.0 3.3 7.1E-05 42.5 9.0 54 423-476 54-107 (238)
385 COG2513 PrpB PEP phosphonomuta 87.0 15 0.00033 38.6 13.8 92 376-477 89-189 (289)
386 PRK06852 aldolase; Validated 86.9 11 0.00023 40.2 12.9 52 537-589 218-274 (304)
387 PLN02493 probable peroxisomal 86.8 8.8 0.00019 41.9 12.5 45 532-580 208-252 (367)
388 PF09370 TIM-br_sig_trns: TIM- 86.5 4.2 9.1E-05 42.2 9.4 153 424-582 66-248 (268)
389 KOG1492|consensus 86.2 0.44 9.5E-06 47.5 2.1 55 74-141 233-287 (377)
390 PRK08227 autoinducer 2 aldolas 86.2 6.7 0.00015 40.9 10.9 67 509-589 164-235 (264)
391 cd04737 LOX_like_FMN L-Lactate 86.2 12 0.00025 40.8 13.1 51 533-587 206-260 (351)
392 PRK05742 nicotinate-nucleotide 85.9 4 8.6E-05 42.8 9.1 32 548-582 232-263 (277)
393 TIGR02320 PEP_mutase phosphoen 85.6 5.9 0.00013 41.7 10.3 51 424-476 64-114 (285)
394 PRK13397 3-deoxy-7-phosphohept 85.5 12 0.00025 38.8 12.1 105 416-579 105-218 (250)
395 PRK08385 nicotinate-nucleotide 85.5 8 0.00017 40.6 11.1 34 548-584 230-263 (278)
396 cd02930 DCR_FMN 2,4-dienoyl-Co 85.4 17 0.00036 39.3 14.0 86 377-473 220-305 (353)
397 PF01729 QRPTase_C: Quinolinat 84.8 6.5 0.00014 38.2 9.4 38 547-587 125-162 (169)
398 COG5152 Uncharacterized conser 84.7 0.34 7.3E-06 47.6 0.5 27 73-102 140-166 (259)
399 cd00947 TBP_aldolase_IIB Tagat 84.6 56 0.0012 34.3 19.1 50 534-586 182-232 (276)
400 cd02931 ER_like_FMN Enoate red 84.6 14 0.00031 40.4 13.1 90 377-477 248-337 (382)
401 PRK12858 tagatose 1,6-diphosph 84.5 21 0.00046 38.6 14.0 53 531-587 224-283 (340)
402 PLN02274 inosine-5'-monophosph 84.3 2.8 6E-05 47.7 7.6 67 507-580 251-317 (505)
403 PRK02901 O-succinylbenzoate sy 84.3 45 0.00098 35.8 16.5 80 376-471 86-166 (327)
404 PRK13398 3-deoxy-7-phosphohept 84.3 12 0.00025 39.1 11.6 109 415-581 116-232 (266)
405 PLN02424 ketopantoate hydroxym 84.2 10 0.00022 40.7 11.3 83 392-477 52-137 (332)
406 COG1830 FbaB DhnA-type fructos 84.2 18 0.00039 37.6 12.7 48 538-588 192-245 (265)
407 cd02801 DUS_like_FMN Dihydrour 84.1 1.2 2.7E-05 44.5 4.3 66 504-596 139-204 (231)
408 cd06557 KPHMT-like Ketopantoat 83.9 13 0.00028 38.6 11.7 81 393-476 30-113 (254)
409 TIGR03247 glucar-dehydr glucar 83.9 28 0.0006 39.0 15.1 72 379-469 180-253 (441)
410 TIGR02319 CPEP_Pphonmut carbox 83.7 10 0.00023 40.1 11.1 53 424-477 63-115 (294)
411 cd01572 QPRTase Quinolinate ph 83.7 3.4 7.3E-05 43.1 7.4 59 511-582 197-256 (268)
412 cd02803 OYE_like_FMN_family Ol 83.7 16 0.00035 38.6 12.8 140 326-477 141-313 (327)
413 PRK02412 aroD 3-dehydroquinate 83.7 57 0.0012 33.6 16.9 95 370-476 17-118 (253)
414 TIGR01521 FruBisAldo_II_B fruc 83.6 71 0.0015 34.7 18.3 49 535-585 210-280 (347)
415 cd00954 NAL N-Acetylneuraminic 83.3 47 0.001 34.7 15.9 84 379-475 19-104 (288)
416 PRK07455 keto-hydroxyglutarate 83.1 15 0.00032 36.2 11.2 81 439-581 12-92 (187)
417 COG4981 Enoyl reductase domain 83.0 9.2 0.0002 43.3 10.6 129 427-586 111-259 (717)
418 PRK13305 sgbH 3-keto-L-gulonat 82.9 4.3 9.3E-05 41.1 7.5 145 428-591 45-202 (218)
419 TIGR01858 tag_bisphos_ald clas 82.9 58 0.0013 34.3 16.1 49 534-585 186-235 (282)
420 PRK05835 fructose-bisphosphate 82.8 68 0.0015 34.3 16.7 49 534-585 190-260 (307)
421 cd03332 LMO_FMN L-Lactate 2-mo 82.7 15 0.00032 40.4 12.1 44 533-580 238-281 (383)
422 COG2513 PrpB PEP phosphonomuta 82.7 10 0.00022 39.9 10.2 55 423-478 63-117 (289)
423 TIGR01927 menC_gamma/gm+ o-suc 82.6 46 0.00099 35.3 15.6 40 538-579 196-235 (307)
424 cd02922 FCB2_FMN Flavocytochro 82.4 17 0.00036 39.5 12.3 44 533-580 198-241 (344)
425 TIGR02321 Pphn_pyruv_hyd phosp 82.4 50 0.0011 34.9 15.6 97 377-476 87-188 (290)
426 COG0329 DapA Dihydrodipicolina 82.4 50 0.0011 35.0 15.7 84 379-476 23-108 (299)
427 TIGR02708 L_lactate_ox L-lacta 82.3 18 0.0004 39.5 12.6 52 533-588 213-268 (367)
428 PRK08610 fructose-bisphosphate 82.3 36 0.00079 35.9 14.4 46 535-583 190-236 (286)
429 cd01573 modD_like ModD; Quinol 82.2 3.3 7.2E-05 43.3 6.7 60 512-581 199-259 (272)
430 cd06556 ICL_KPHMT Members of t 82.2 30 0.00064 35.6 13.4 143 267-476 17-178 (240)
431 TIGR00559 pdxJ pyridoxine 5'-p 82.1 13 0.00028 38.1 10.5 127 453-588 20-159 (237)
432 COG5084 YTH1 Cleavage and poly 81.9 1.1 2.4E-05 47.0 2.9 56 73-137 103-158 (285)
433 PF01487 DHquinase_I: Type I 3 81.9 12 0.00027 37.4 10.5 91 373-476 2-97 (224)
434 COG0284 PyrF Orotidine-5'-phos 81.7 25 0.00053 36.2 12.6 47 429-478 54-100 (240)
435 PRK12737 gatY tagatose-bisphos 81.7 70 0.0015 33.7 16.3 48 535-585 189-237 (284)
436 PRK12595 bifunctional 3-deoxy- 81.6 20 0.00043 39.1 12.5 111 415-583 207-325 (360)
437 PF04309 G3P_antiterm: Glycero 81.1 1.3 2.9E-05 43.2 3.0 66 508-585 109-174 (175)
438 PRK09195 gatY tagatose-bisphos 81.0 73 0.0016 33.6 16.1 48 534-584 188-236 (284)
439 cd00950 DHDPS Dihydrodipicolin 80.9 46 0.00099 34.6 14.7 83 379-475 19-103 (284)
440 TIGR01334 modD putative molybd 80.7 9.9 0.00022 39.9 9.5 31 548-581 234-264 (277)
441 PF01070 FMN_dh: FMN-dependent 80.6 19 0.0004 39.2 11.9 45 532-580 209-253 (356)
442 TIGR03128 RuMP_HxlA 3-hexulose 80.5 12 0.00026 36.8 9.8 65 509-582 69-135 (206)
443 TIGR03249 KdgD 5-dehydro-4-deo 80.4 55 0.0012 34.4 15.2 82 379-475 24-107 (296)
444 PRK01362 putative translaldola 80.3 47 0.001 33.6 13.9 48 540-595 147-194 (214)
445 TIGR00222 panB 3-methyl-2-oxob 80.3 20 0.00043 37.4 11.4 81 392-476 32-115 (263)
446 cd00003 PNPsynthase Pyridoxine 80.1 17 0.00036 37.2 10.5 127 453-588 20-159 (234)
447 PRK12738 kbaY tagatose-bisphos 80.0 85 0.0018 33.2 16.7 48 534-584 188-236 (286)
448 PRK07807 inosine 5-monophospha 79.7 4.4 9.5E-05 45.8 7.0 71 505-582 228-298 (479)
449 PF03740 PdxJ: Pyridoxal phosp 79.7 15 0.00033 37.7 10.1 127 453-588 21-160 (239)
450 TIGR02313 HpaI-NOT-DapA 2,4-di 79.5 61 0.0013 34.1 15.1 83 379-475 19-103 (294)
451 PRK07535 methyltetrahydrofolat 79.4 20 0.00042 37.3 11.2 56 377-445 21-76 (261)
452 cd00953 KDG_aldolase KDG (2-ke 79.2 59 0.0013 33.9 14.8 82 379-475 18-99 (279)
453 cd00952 CHBPH_aldolase Trans-o 79.2 57 0.0012 34.6 14.9 83 379-475 27-111 (309)
454 TIGR01928 menC_lowGC/arch o-su 79.2 44 0.00096 35.6 14.1 42 536-579 211-252 (324)
455 PRK06106 nicotinate-nucleotide 79.1 23 0.0005 37.3 11.6 30 549-581 238-267 (281)
456 KOG2185|consensus 79.0 0.84 1.8E-05 49.4 1.0 22 114-136 141-162 (486)
457 TIGR00683 nanA N-acetylneurami 78.8 75 0.0016 33.3 15.5 83 379-475 19-104 (290)
458 cd03317 NAAAR N-acylamino acid 78.6 68 0.0015 34.4 15.5 68 381-471 139-208 (354)
459 PRK08255 salicylyl-CoA 5-hydro 78.5 20 0.00044 42.9 12.5 134 327-476 552-718 (765)
460 TIGR03151 enACPred_II putative 78.4 27 0.00058 37.2 12.1 51 422-476 46-96 (307)
461 PRK13803 bifunctional phosphor 78.2 50 0.0011 38.6 15.2 183 372-587 4-197 (610)
462 PRK06559 nicotinate-nucleotide 78.1 18 0.00039 38.2 10.5 33 549-584 241-273 (290)
463 PRK02714 O-succinylbenzoate sy 77.9 97 0.0021 33.0 16.3 42 536-579 205-246 (320)
464 TIGR00167 cbbA ketose-bisphosp 77.8 99 0.0021 32.7 16.2 48 535-585 193-241 (288)
465 PRK13396 3-deoxy-7-phosphohept 77.8 23 0.00049 38.5 11.4 108 415-580 190-306 (352)
466 PF04131 NanE: Putative N-acet 77.8 8.3 0.00018 38.2 7.3 63 508-579 56-118 (192)
467 TIGR00875 fsa_talC_mipB fructo 77.7 54 0.0012 33.1 13.4 37 549-594 157-193 (213)
468 PRK03620 5-dehydro-4-deoxygluc 77.6 77 0.0017 33.5 15.3 82 379-475 26-109 (303)
469 PRK07896 nicotinate-nucleotide 77.5 19 0.00041 38.1 10.4 34 548-584 245-278 (289)
470 TIGR00674 dapA dihydrodipicoli 77.5 69 0.0015 33.4 14.8 83 379-475 17-101 (285)
471 COG0329 DapA Dihydrodipicolina 77.4 8.5 0.00018 40.8 7.9 87 452-588 23-114 (299)
472 PRK14565 triosephosphate isome 77.4 15 0.00032 37.8 9.4 45 548-595 188-232 (237)
473 TIGR02313 HpaI-NOT-DapA 2,4-di 77.1 9 0.0002 40.4 8.0 87 452-587 19-109 (294)
474 PRK12857 fructose-1,6-bisphosp 77.1 1E+02 0.0022 32.5 16.3 48 535-585 189-237 (284)
475 cd00308 enolase_like Enolase-s 76.9 32 0.00069 34.5 11.7 94 427-579 81-174 (229)
476 PRK05265 pyridoxine 5'-phospha 76.5 38 0.00082 34.8 11.8 127 452-587 22-161 (239)
477 PRK03170 dihydrodipicolinate s 76.3 85 0.0018 32.8 15.1 83 379-475 20-104 (292)
478 PRK06543 nicotinate-nucleotide 76.1 26 0.00055 37.0 10.9 31 549-582 237-267 (281)
479 PRK07084 fructose-bisphosphate 76.1 78 0.0017 34.0 14.7 48 535-584 203-272 (321)
480 KOG1813|consensus 75.9 0.92 2E-05 47.3 0.2 28 74-104 186-213 (313)
481 TIGR01036 pyrD_sub2 dihydrooro 75.8 38 0.00081 36.5 12.5 153 311-474 132-317 (335)
482 PLN02561 triosephosphate isome 75.6 15 0.00033 38.0 9.0 44 548-595 203-246 (253)
483 KOG0538|consensus 75.3 6.8 0.00015 41.5 6.3 43 533-579 208-250 (363)
484 cd00951 KDGDH 5-dehydro-4-deox 75.2 11 0.00024 39.5 8.1 85 453-587 20-108 (289)
485 PLN02495 oxidoreductase, actin 75.2 24 0.00052 38.8 10.9 46 249-295 12-58 (385)
486 PRK12653 fructose-6-phosphate 74.8 82 0.0018 32.0 13.8 65 515-581 123-188 (220)
487 PRK06096 molybdenum transport 74.6 26 0.00057 36.9 10.6 31 548-581 235-265 (284)
488 PRK03620 5-dehydro-4-deoxygluc 74.6 11 0.00024 39.8 8.0 29 452-480 26-54 (303)
489 PRK15440 L-rhamnonate dehydrat 74.6 29 0.00063 38.2 11.5 66 394-471 171-239 (394)
490 PTZ00170 D-ribulose-5-phosphat 74.5 34 0.00074 34.7 11.2 132 440-578 4-143 (228)
491 cd00954 NAL N-Acetylneuraminic 74.2 8.9 0.00019 40.1 7.1 28 452-479 19-47 (288)
492 COG5084 YTH1 Cleavage and poly 73.8 2.6 5.6E-05 44.2 2.9 54 75-140 135-190 (285)
493 PRK08673 3-deoxy-7-phosphohept 73.5 42 0.00092 36.2 12.0 52 415-473 182-233 (335)
494 PRK13384 delta-aminolevulinic 73.5 39 0.00084 36.1 11.4 89 380-474 60-167 (322)
495 KOG2494|consensus 73.4 1.8 3.9E-05 45.8 1.6 52 72-135 35-91 (331)
496 cd04726 KGPDC_HPS 3-Keto-L-gul 73.1 28 0.0006 34.0 9.9 79 508-595 69-152 (202)
497 PRK09016 quinolinate phosphori 72.9 31 0.00067 36.6 10.6 30 549-581 252-281 (296)
498 PF00701 DHDPS: Dihydrodipicol 72.7 1.1E+02 0.0023 31.9 14.7 83 369-465 71-153 (289)
499 TIGR03569 NeuB_NnaB N-acetylne 72.7 1.2E+02 0.0025 32.8 15.1 187 371-577 3-220 (329)
500 cd00952 CHBPH_aldolase Trans-o 72.6 13 0.00029 39.4 8.0 27 453-479 28-54 (309)
No 1
>KOG2333|consensus
Probab=100.00 E-value=5.6e-113 Score=895.45 Aligned_cols=489 Identities=44% Similarity=0.774 Sum_probs=402.3
Q ss_pred CCcccccccccceecccccchhccccccchhhhhhhcccccchhhhhhhhhhhhhcCCCCCCCCCCCCCCCcccCCcccc
Q psy9514 2 DASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQNKARGPTFVTKPEDCYCPFLK 81 (611)
Q Consensus 2 ~~~g~a~ik~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gqnk~r~~~~~~~~~~~lC~~~~ 81 (611)
.++||||||+||||+...+... ...+..+.++.++ + .+...||++.++.+++||||+|+. .+ +.++||++++
T Consensus 12 ~e~giapIK~eylvp~~~~~~~-~~~~~~~kR~~~~---~-~~~~~~Kr~~k~~~k~~~~k~r~~-~q--~~n~LCPsli 83 (614)
T KOG2333|consen 12 LERGIAPIKPEYLVPKENQKLA-AENQAKSKRKRRG---G-NGETEKKRKRKRERKEGQNKNRDV-AQ--VQNRLCPSLI 83 (614)
T ss_pred hhcCCcccCHhhcCCCchhhhh-hcccccchhhhcc---C-ccchhhhhhhhhhhhhhccccchh-hh--hhhccChHhh
Confidence 3689999999999987643222 1122333333333 1 233344444467788999999998 43 4899999999
Q ss_pred cCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceeccccCCCCCccccCccccCccCCCccchhhHhhhhccCCCc
Q psy9514 82 DSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNK 161 (611)
Q Consensus 82 ~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~~h~~~~~~~~~~~~~~~~~~~~~~~~ 161 (611)
++ +...|+|||+|||.|||+.||+.|++||++.||+|+++|+||||++|||+++|.+++|++++..+.... +..+..
T Consensus 84 ~g-~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~~~~~kek~~d--~~~~~~ 160 (614)
T KOG2333|consen 84 QG-DISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHLDIEGNNLIQKEKDPD--GQFPPT 160 (614)
T ss_pred cC-CCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhcccCccccchhhhhhCcc--cCCCCc
Confidence 98 435699999999999999999999999999999999999999999999999999999999875443321 222335
Q ss_pred ccccCCHHHHHHHhcCcccCCchHHHHHHhhhcccCCCC--CcccccCCCccccccccccC----CCCCccc--cccccc
Q psy9514 162 TVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKD--TDDCCKNQDSKVIEGREEIN----TPNTDDV--IKVQEE 233 (611)
Q Consensus 162 ~~n~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~ 233 (611)
+.|.+++++|.+|||++|+|+||++.|+.+++.....+. ...-.+++. ++..+..+.+ ++.+... ....-.
T Consensus 161 t~N~~s~elq~~LrKre~~fekse~~l~~~~~~~~~~~~~e~~~~e~ap~-ee~~~~~~~~~g~~~~~~~ee~t~~k~~~ 239 (614)
T KOG2333|consen 161 TKNGVSKELQVDLRKREYDFEKSEEILEIIDSFEEARKMKEEEEVEKAPS-EENQEDQEQSVGPQTEQRLEELTEHKMKP 239 (614)
T ss_pred cccccCHHHHHHHHHhhcChHHHHHHHHHHhcccccccCCccchhhcCcc-hhccccccccccccccccccccccccCcc
Confidence 679999999999999999999999999988765411000 000000000 0000000000 0000000 001112
Q ss_pred cccCCCCccCCCCCCcccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCC
Q psy9514 234 TKSGPVLDTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE 313 (611)
Q Consensus 234 ~~~~~~~~~~~~~f~p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e 313 (611)
+.++...+++.+++.|.+++.|+|++++|||||||+|||||||||+.+|||+||+||+++.||+||+.+||+|+++|.+|
T Consensus 240 ~sv~~~~de~si~l~p~eKk~lD~r~K~~LaPLTTvGNLPFRRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sE 319 (614)
T KOG2333|consen 240 TSVGLKYDEDSIRLRPQEKKLLDFRDKKYLAPLTTVGNLPFRRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSE 319 (614)
T ss_pred ceecccccchhhccChhcccccccccceeeccccccCCccHHHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcc
Confidence 35677788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHh
Q psy9514 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQ 393 (611)
Q Consensus 314 ~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~ 393 (611)
..|||||+|+.|++++++|++|++...|||||||+||||++
T Consensus 320 diFGVQlag~~pdt~~kaaq~i~e~~~VDFIDlN~GCPIDl--------------------------------------- 360 (614)
T KOG2333|consen 320 DIFGVQLAGSKPDTAAKAAQVIAETCDVDFIDLNMGCPIDL--------------------------------------- 360 (614)
T ss_pred cceeeEeccCChHHHHHHHHHHHhhcceeeeeccCCCChhe---------------------------------------
Confidence 99999999999999999999999999999999999999888
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHH-HcCCCEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFR-DWGASLI 471 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~-~aGvd~I 471 (611)
++++|.||+|+++|..+.++|++|+++++ +|||||||+|..++.+.++.++..+. +||+++|
T Consensus 361 ----------------vy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~~~a~~Li~~i~newg~sav 424 (614)
T KOG2333|consen 361 ----------------VYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGHPVAHELIPRIVNEWGASAV 424 (614)
T ss_pred ----------------eeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCchhHHHHHHHHhhccCcceE
Confidence 99999999999999999999999999996 69999999999999999999999998 9999999
Q ss_pred EEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCc
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iP 551 (611)
|+|||+|+||||+.|||+||.+|++.. ...+|
T Consensus 425 TlHGRSRqQRYTK~AnWdYi~e~a~~a------------------------------------------------k~~l~ 456 (614)
T KOG2333|consen 425 TLHGRSRQQRYTKSANWDYIEECADKA------------------------------------------------KSALP 456 (614)
T ss_pred EecCchhhhhhhcccChHHHHHHHHhc------------------------------------------------ccCce
Confidence 999999999999999999888886521 12389
Q ss_pred EEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCccccc
Q psy9514 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 552 VIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~dis~~e 605 (611)
|||||||+||+||++.+..+|.+|+||||||||++||||+||+++|+|||||+|
T Consensus 457 liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSte 510 (614)
T KOG2333|consen 457 LIGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTE 510 (614)
T ss_pred eEecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchH
Confidence 999999999999999999887899999999999999999999999999999998
No 2
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.5e-49 Score=413.60 Aligned_cols=238 Identities=38% Similarity=0.662 Sum_probs=208.5
Q ss_pred ccccCeeecCcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
.+++.+.++++++||||.+++++|||++++++|+ +++||||+.+.+++.+.+..+..+...+.+.++.|||+|++|+.+
T Consensus 2 ~~~~~~~~~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~~~~~~~~~~~~~~~~~~~~e~p~~vQl~gsdp~~l 81 (323)
T COG0042 2 LKIGLIELRNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDELEEERPVAVQLGGSDPELL 81 (323)
T ss_pred CccccccccCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEEhhhccCCcchhhhcCcCCCCCCEEEEecCCCHHHH
Confidence 4677888999999999999999999999999999 999999999999999988887777655556677777777777666
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCcc
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE 408 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~ 408 (611)
+++++.+.+ .|+|+||||||||++
T Consensus 82 ~eaA~~~~~--------------------------------------------------------~g~~~IdlN~GCP~~ 105 (323)
T COG0042 82 AEAAKIAEE--------------------------------------------------------LGADIIDLNCGCPSP 105 (323)
T ss_pred HHHHHHHHh--------------------------------------------------------cCCCEEeeeCCCChH
Confidence 666544332 368888888899988
Q ss_pred ceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 409 FIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 409 ~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
.+.+.|+|++||.+|+++.+||++|+++++ +|||||||+|+++....+.++++.++++|+++|+||||++.|+
T Consensus 106 ~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~------ 179 (323)
T COG0042 106 KVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQG------ 179 (323)
T ss_pred HhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhc------
Confidence 899999999999999999999999999995 9999999999987655678999999999999999999999988
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~ 567 (611)
|.++++|++|+++.+...++|||+||||.|++|+.++
T Consensus 180 -------------------------------------------y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~ 216 (323)
T COG0042 180 -------------------------------------------YLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEM 216 (323)
T ss_pred -------------------------------------------CCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHH
Confidence 5566666777777666645999999999999999999
Q ss_pred HHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 568 LKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 568 l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
++.+ +||+||||||++.|||+|.+|
T Consensus 217 l~~t-g~DgVMigRga~~nP~l~~~i 241 (323)
T COG0042 217 LEYT-GADGVMIGRGALGNPWLFRQI 241 (323)
T ss_pred HHhh-CCCEEEEcHHHccCCcHHHHH
Confidence 9987 799999999999999999985
No 3
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.4e-47 Score=402.64 Aligned_cols=234 Identities=21% Similarity=0.412 Sum_probs=195.3
Q ss_pred CcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhh
Q psy9514 259 GKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEE 337 (611)
Q Consensus 259 nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~ 337 (611)
++++||||++++++|||++|+.+|+ +++||||+.+..++.+... .++..++.+.++
T Consensus 1 ~~~~lAPM~g~Td~~fR~l~~~~g~~~~~~TEMv~a~~l~~~~~~--~~l~~~~~e~p~--------------------- 57 (318)
T TIGR00742 1 GRFSVAPMLDWTDRHFRYFLRLLSKHTLLYTEMITAKAIIHGDKK--DILKFSPEESPV--------------------- 57 (318)
T ss_pred CCEEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEEhhhhccCHH--HHcccCCCCCcE---------------------
Confidence 5899999999999999999999998 9999999999988766543 244444444444
Q ss_pred hccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceecccccc
Q psy9514 338 QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGS 417 (611)
Q Consensus 338 ~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~Gs 417 (611)
++|++|++|+.++++|+.+.+ .|||+||||||||..++.++|+|+
T Consensus 58 ----------------------------------~vQl~g~~p~~~~~aA~~~~~-~g~d~IDlN~GCP~~~v~~~g~Gs 102 (318)
T TIGR00742 58 ----------------------------------ALQLGGSDPNDLAKCAKIAEK-RGYDEINLNVGCPSDRVQNGNFGA 102 (318)
T ss_pred ----------------------------------EEEEccCCHHHHHHHHHHHHh-CCCCEEEEECCCCHHHhCCCCeeh
Confidence 455555555555555555543 489999999999999999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCc--hHHHHHHHHHHHcCCCEEEEEcccc-ccccccCcChhHHHHH
Q psy9514 418 GLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN--NIIHNFMPKFRDWGASLITLHGRTR-EQRYTKQADWDYIEKC 494 (611)
Q Consensus 418 aLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~--~~a~~la~~l~~aGvd~ItvhgR~r-~qr~~~~adw~~i~~~ 494 (611)
+|+++|+++.+||++|++++++||+||+|+|+++.. ..+.++++.++++|+++|+||+|++ .|.|+..++.
T Consensus 103 ~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~------ 176 (318)
T TIGR00742 103 CLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENR------ 176 (318)
T ss_pred HhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccc------
Confidence 999999999999999999999999999999987643 5678999999999999999999997 4554322221
Q ss_pred hhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
+.++++|++++++.+..+++|||+||||.|++|+.+++. | |
T Consensus 177 ------------------------------------~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~-g--~ 217 (318)
T TIGR00742 177 ------------------------------------EIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLS-H--V 217 (318)
T ss_pred ------------------------------------cCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHh-C--C
Confidence 455678999999877766899999999999999999995 6 9
Q ss_pred cEEEEcHHhhhCCchHHHHHc
Q psy9514 575 SGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 575 D~VmIGRgaL~dP~lf~ei~~ 595 (611)
|+||||||+|.|||+|.++.+
T Consensus 218 dgVMigRgal~nP~if~~~~~ 238 (318)
T TIGR00742 218 DGVMVGREAYENPYLLANVDR 238 (318)
T ss_pred CEEEECHHHHhCCHHHHHHHH
Confidence 999999999999999999976
No 4
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=100.00 E-value=1.4e-47 Score=402.11 Aligned_cols=224 Identities=39% Similarity=0.702 Sum_probs=167.8
Q ss_pred EeccCCCCCCHHHHHHHHHcCCC-EEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhcc
Q psy9514 262 YLSPLTTVGNLPFRRLCKKWGAD-ITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA 340 (611)
Q Consensus 262 vlAPMt~~gnlpfRrl~~~~Ga~-li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~ 340 (611)
+||||++++++|||++|+++|++ ++||||+.+..++...+..+..+..++.+.++++||+|++|+.+.+++
T Consensus 1 ~LAPM~g~td~~fR~l~~~~g~~~~~~temi~a~~~~~~~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa-------- 72 (309)
T PF01207_consen 1 ILAPMAGVTDLPFRRLCREFGADDLTYTEMISAKAILRSNKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAA-------- 72 (309)
T ss_dssp -E---TTTSSHHHHHHHHCCTSSSBEE-S-EEHHHHHCT-HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHH--------
T ss_pred CccCCCCCchHHHHHHHHHHCCCeEEEcCCEEECcccccccceeecccccccccceeEEEeeccHHHHHHHH--------
Confidence 68999999999999999999998 999999999998888777766666666555555555555555555544
Q ss_pred ceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccc
Q psy9514 341 VDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420 (611)
Q Consensus 341 v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl 420 (611)
+.+.+ .++|+||||||||++.+.+.|+|++||
T Consensus 73 -----------------------------------------------~~~~~-~~~~~IDlN~GCP~~~v~~~g~Ga~Ll 104 (309)
T PF01207_consen 73 -----------------------------------------------EIVAE-LGFDGIDLNMGCPAPKVTKGGAGAALL 104 (309)
T ss_dssp -----------------------------------------------HHHCC-TT-SEEEEEE---SHHHHHCT-GGGGG
T ss_pred -----------------------------------------------Hhhhc-cCCcEEeccCCCCHHHHhcCCcChhhh
Confidence 44432 489999999999999999999999999
Q ss_pred cChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc
Q psy9514 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500 (611)
Q Consensus 421 ~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~ 500 (611)
.+|+++.+||+++++++++||+||+|+|++++...+.++++.|+++|+++|+||+|++.|+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~------------------- 165 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQR------------------- 165 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCC-------------------
T ss_pred cChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhc-------------------
Confidence 9999999999999999999999999999987788899999999999999999999999988
Q ss_pred CchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 501 ~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
|.++++|++++++.+.. ++|||+||||.|++|+.++++.+ +|||||||
T Consensus 166 ------------------------------~~~~a~w~~i~~i~~~~-~ipvi~NGdI~s~~d~~~~~~~t-g~dgvMig 213 (309)
T PF01207_consen 166 ------------------------------YKGPADWEAIAEIKEAL-PIPVIANGDIFSPEDAERMLEQT-GADGVMIG 213 (309)
T ss_dssp ------------------------------CTS---HHHHHHCHHC--TSEEEEESS--SHHHHHHHCCCH--SSEEEES
T ss_pred ------------------------------CCcccchHHHHHHhhcc-cceeEEcCccCCHHHHHHHHHhc-CCcEEEEc
Confidence 55566667777766654 69999999999999999999986 69999999
Q ss_pred HHhhhCCchHHH
Q psy9514 581 RGALIKPWIFQE 592 (611)
Q Consensus 581 RgaL~dP~lf~e 592 (611)
||+|.|||+|.+
T Consensus 214 Rgal~nP~lf~~ 225 (309)
T PF01207_consen 214 RGALGNPWLFRE 225 (309)
T ss_dssp HHHCC-CCHHCH
T ss_pred hhhhhcCHHhhh
Confidence 999999999994
No 5
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=100.00 E-value=1.1e-45 Score=389.82 Aligned_cols=238 Identities=28% Similarity=0.487 Sum_probs=202.1
Q ss_pred cccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHH
Q psy9514 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330 (611)
Q Consensus 251 ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~ 330 (611)
.++.+.++++++||||++++++|||++|+++|++++||||+.+.++.......+......+
T Consensus 2 ~i~~~~~~~~~~lAPM~g~td~~fR~l~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~------------------- 62 (321)
T PRK10415 2 RIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID------------------- 62 (321)
T ss_pred ccCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEEccEEcchhhhcCHhHHHHhccCc-------------------
Confidence 4678899999999999999999999999999999999999998765322211111110001
Q ss_pred HHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccce
Q psy9514 331 CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410 (611)
Q Consensus 331 ~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v 410 (611)
.+.++++|++|++|+.++++|+.+.+ .|+|+||||||||...+
T Consensus 63 ------------------------------------~~~~~~vQl~g~~~~~~~~aa~~~~~-~g~d~IdlN~gCP~~~v 105 (321)
T PRK10415 63 ------------------------------------EPGIRTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKV 105 (321)
T ss_pred ------------------------------------cCCCEEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEeCCCCHHHH
Confidence 12356778888888888888887653 69999999999999989
Q ss_pred eccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhH
Q psy9514 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490 (611)
Q Consensus 411 ~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~ 490 (611)
.+.|+|++|+++|+++.+|+++|+.++++||+||+|.|+.++...+.++++.++++|+++|+||+|++.+.
T Consensus 106 ~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~--------- 176 (321)
T PRK10415 106 NRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACL--------- 176 (321)
T ss_pred cCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccc---------
Confidence 99999999999999999999999999999999999999987666788999999999999999999997776
Q ss_pred HHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHc
Q psy9514 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKK 570 (611)
Q Consensus 491 i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~ 570 (611)
|.+.++|++++++.+. +++|||+||||.|++|+.++++.
T Consensus 177 ----------------------------------------~~G~a~~~~i~~ik~~-~~iPVI~nGgI~s~~da~~~l~~ 215 (321)
T PRK10415 177 ----------------------------------------FNGEAEYDSIRAVKQK-VSIPVIANGDITDPLKARAVLDY 215 (321)
T ss_pred ----------------------------------------cCCCcChHHHHHHHHh-cCCcEEEeCCCCCHHHHHHHHhc
Confidence 5666777888887665 58999999999999999999987
Q ss_pred CCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 571 SPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 571 G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+ +||+||||||+|.|||+|.++++
T Consensus 216 ~-gadgVmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 216 T-GADALMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred c-CCCEEEEChHhhcCChHHHHHHH
Confidence 6 69999999999999999999976
No 6
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=100.00 E-value=1.8e-45 Score=385.93 Aligned_cols=236 Identities=25% Similarity=0.389 Sum_probs=195.2
Q ss_pred cEEeccCCCCCCHHHHHHHHHcC-CCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhh
Q psy9514 260 KLYLSPLTTVGNLPFRRLCKKWG-ADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338 (611)
Q Consensus 260 rivlAPMt~~gnlpfRrl~~~~G-a~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~ 338 (611)
+++||||.+++++|||++|+++| ++++||||+.+..+....+. +. .....+
T Consensus 2 ~~~lAPMag~td~~fR~l~~~~g~~~~~~temvs~~~~~~~~~~-~~------------------------~~~~~~--- 53 (312)
T PRK10550 2 RVLLAPMEGVLDSLVRELLTEVNDYDLCITEFLRVVDQLLPVKV-FH------------------------RLCPEL--- 53 (312)
T ss_pred CeEEECCCCCcCHHHHHHHHHhCCCCEEEeCCEEechhcccchh-HH------------------------HHhHHh---
Confidence 58999999999999999999999 89999999998765432211 00 000000
Q ss_pred ccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccc
Q psy9514 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSG 418 (611)
Q Consensus 339 ~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~Gsa 418 (611)
+... ....+.++++|++|++|+.++++|+++.+ .|||+||||||||.+.+.+.|+|++
T Consensus 54 --------~~~~-------------~~~~e~p~~vQl~g~~p~~~~~aA~~~~~-~g~d~IdiN~GCP~~~v~~~g~Gs~ 111 (312)
T PRK10550 54 --------HNAS-------------RTPSGTLVRIQLLGQYPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGAT 111 (312)
T ss_pred --------cccC-------------CCCCCCcEEEEeccCCHHHHHHHHHHHHH-cCCCEEEEeCCCCchHHhcCCCchH
Confidence 0000 01224578889999999999998888854 5999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhh
Q psy9514 419 LLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496 (611)
Q Consensus 419 Ll~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~ 496 (611)
|+++|+++.+|+++|+++++ +||+||+|+|+++. +.+.++++.++++|+++|+||+|++.|+
T Consensus 112 Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~-~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~--------------- 175 (312)
T PRK10550 112 LLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSG-ERKFEIADAVQQAGATELVVHGRTKEDG--------------- 175 (312)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCc-hHHHHHHHHHHhcCCCEEEECCCCCccC---------------
Confidence 99999999999999999884 89999999998653 3478999999999999999999998777
Q ss_pred hcccCchhhhhcchhhHhcCCceEEeccccccccccCCc-cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCcc
Q psy9514 497 LCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA-DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575 (611)
Q Consensus 497 ~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a-~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD 575 (611)
|.+++ +|++++++.+. +++|||+||||.|++|+.++++.+ +||
T Consensus 176 ----------------------------------y~g~~~~~~~i~~ik~~-~~iPVi~nGdI~t~~da~~~l~~~-g~D 219 (312)
T PRK10550 176 ----------------------------------YRAEHINWQAIGEIRQR-LTIPVIANGEIWDWQSAQQCMAIT-GCD 219 (312)
T ss_pred ----------------------------------CCCCcccHHHHHHHHhh-cCCcEEEeCCcCCHHHHHHHHhcc-CCC
Confidence 55553 77778877665 589999999999999999999877 799
Q ss_pred EEEEcHHhhhCCchHHHHHccc
Q psy9514 576 GVMIGRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 576 ~VmIGRgaL~dP~lf~ei~~g~ 597 (611)
+||||||+|.|||||++++.+.
T Consensus 220 gVmiGRg~l~nP~lf~~~~~g~ 241 (312)
T PRK10550 220 AVMIGRGALNIPNLSRVVKYNE 241 (312)
T ss_pred EEEEcHHhHhCcHHHHHhhcCC
Confidence 9999999999999999998865
No 7
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=100.00 E-value=4.3e-44 Score=379.37 Aligned_cols=242 Identities=21% Similarity=0.390 Sum_probs=198.3
Q ss_pred CeeecCcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHH
Q psy9514 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332 (611)
Q Consensus 254 ~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a 332 (611)
+....++++||||++++++|||++|+++|+ +++||||+.+..++.+. .+.++..++.+.
T Consensus 6 ~~~~~~~~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~~~l~~~~--~~~~l~~~~~e~------------------ 65 (333)
T PRK11815 6 SKLPSRRFSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTTGAIIHGD--RERLLAFDPEEH------------------ 65 (333)
T ss_pred ccCCCCCEEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEeccccccC--HHHHhccCCCCC------------------
Confidence 344568999999999999999999999997 99999999998877654 344444444444
Q ss_pred HHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceec
Q psy9514 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412 (611)
Q Consensus 333 ~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~ 412 (611)
++++|++|++|+.+++||+++.+ +|||+||||+|||..++++
T Consensus 66 -------------------------------------p~~vQl~g~~p~~~~~aA~~~~~-~g~d~IdlN~gCP~~~v~~ 107 (333)
T PRK11815 66 -------------------------------------PVALQLGGSDPADLAEAAKLAED-WGYDEINLNVGCPSDRVQN 107 (333)
T ss_pred -------------------------------------cEEEEEeCCCHHHHHHHHHHHHh-cCCCEEEEcCCCCHHHccC
Confidence 45555555556666666666543 5899999999999999999
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCc--hHHHHHHHHHHHcCCCEEEEEcccc-ccccccCcChh
Q psy9514 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN--NIIHNFMPKFRDWGASLITLHGRTR-EQRYTKQADWD 489 (611)
Q Consensus 413 ~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~--~~a~~la~~l~~aGvd~ItvhgR~r-~qr~~~~adw~ 489 (611)
++||++|++||+++.+|++++++++++||+||+|+|+++.. ..+.++++.++++|+++|+||+|++ .+.|...
T Consensus 108 ~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~---- 183 (333)
T PRK11815 108 GRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPK---- 183 (333)
T ss_pred CCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCcc----
Confidence 99999999999999999999999999999999999987643 4578999999999999999999985 2332111
Q ss_pred HHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHH
Q psy9514 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569 (611)
Q Consensus 490 ~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~ 569 (611)
..++.++++|++++++.+..+++|||+||||.|++|+.++++
T Consensus 184 --------------------------------------~~~~~~~~~~~~i~~v~~~~~~iPVI~nGgI~s~eda~~~l~ 225 (333)
T PRK11815 184 --------------------------------------ENREIPPLDYDRVYRLKRDFPHLTIEINGGIKTLEEAKEHLQ 225 (333)
T ss_pred --------------------------------------ccccCCCcCHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh
Confidence 112457789999998877656899999999999999999996
Q ss_pred cCCCccEEEEcHHhhhCCchHHHHHcccC
Q psy9514 570 KSPSISGVMIGRGALIKPWIFQEIKEKKL 598 (611)
Q Consensus 570 ~G~~aD~VmIGRgaL~dP~lf~ei~~g~~ 598 (611)
+ ||+||||||+|.|||+|+++++...
T Consensus 226 -~--aDgVmIGRa~l~nP~~~~~~~~~~~ 251 (333)
T PRK11815 226 -H--VDGVMIGRAAYHNPYLLAEVDRELF 251 (333)
T ss_pred -c--CCEEEEcHHHHhCCHHHHHHHHHhc
Confidence 5 9999999999999999999986443
No 8
>KOG2335|consensus
Probab=100.00 E-value=1.2e-44 Score=374.24 Aligned_cols=224 Identities=31% Similarity=0.504 Sum_probs=194.0
Q ss_pred EeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhccc
Q psy9514 262 YLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAV 341 (611)
Q Consensus 262 vlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v 341 (611)
++|||++++.++||+|++.||++++||||+.+..++...+..-..+
T Consensus 22 i~APMvd~S~l~fR~L~R~y~~~l~yTpMi~a~~fv~~ek~r~~~~---------------------------------- 67 (358)
T KOG2335|consen 22 IVAPMVDYSELAFRRLVRLYGADLLYTPMIHAKTFVHSEKYRDSEL---------------------------------- 67 (358)
T ss_pred ccCCcccccHHHHHHHHHHhCCceEechHHHHHHHhcCccchhhhc----------------------------------
Confidence 8999999999999999999999999999999988764422100000
Q ss_pred eeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceecccccccccc
Q psy9514 342 DFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQ 421 (611)
Q Consensus 342 ~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~ 421 (611)
.-|| .+.|++||++|++|+.+.+||+++.. .+|+||||||||+..+.+.|||+.|+.
T Consensus 68 ------st~~---------------~D~PLIvQf~~ndp~~ll~Aa~lv~~--y~D~idlNcGCPq~~a~~g~yGa~L~~ 124 (358)
T KOG2335|consen 68 ------STSP---------------EDRPLIVQFGGNDPENLLKAARLVQP--YCDGIDLNCGCPQKVAKRGGYGAFLMD 124 (358)
T ss_pred ------ccCC---------------CCCceEEEEcCCCHHHHHHHHHHhhh--hcCcccccCCCCHHHHhcCCccceecc
Confidence 0122 35588999999999999999998865 459999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC
Q psy9514 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD 501 (611)
Q Consensus 422 r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~ 501 (611)
+|+++.+||+++++.++.||++|||++ ++...+.++++.++++|++.+|||||++.|+.
T Consensus 125 ~~eLv~e~V~~v~~~l~~pVs~KIRI~--~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg------------------- 183 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANLNVPVSVKIRIF--VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKG------------------- 183 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEEec--CcHHHHHHHHHHHHhCCCcEEEEecccHHhcC-------------------
Confidence 999999999999999999999999998 45678899999999999999999999998871
Q ss_pred chhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 502 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 502 ~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
..+++++|++|+.+.+...++|||+||+|.+++|++.+++.+ ++||||+||
T Consensus 184 ----------------------------~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~t-G~dGVM~ar 234 (358)
T KOG2335|consen 184 ----------------------------LKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYT-GADGVMSAR 234 (358)
T ss_pred ----------------------------CCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHh-CCceEEecc
Confidence 136778888888888877669999999999999999999965 599999999
Q ss_pred HhhhCCchHHH
Q psy9514 582 GALIKPWIFQE 592 (611)
Q Consensus 582 gaL~dP~lf~e 592 (611)
|+|.|||+|.-
T Consensus 235 glL~NPa~F~~ 245 (358)
T KOG2335|consen 235 GLLYNPALFLT 245 (358)
T ss_pred hhhcCchhhcc
Confidence 99999999954
No 9
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=100.00 E-value=1.5e-43 Score=373.55 Aligned_cols=237 Identities=35% Similarity=0.642 Sum_probs=199.3
Q ss_pred ccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHH
Q psy9514 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKC 331 (611)
Q Consensus 252 i~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~ 331 (611)
++++.++++++||||.+++++|||++|+++|++++||||+.+..+....+..+.++..++.+
T Consensus 1 ~~~~~~~~~l~lAPm~~~t~~~fR~l~~~~g~~~~~temi~~~~l~~~~~~~~~~~~~~~~~------------------ 62 (319)
T TIGR00737 1 IGNIQLKSRVVLAPMAGVTDSPFRRLVAEYGAGLTVCEMVSSEAIVYDSQRTMRLLDIAEDE------------------ 62 (319)
T ss_pred CCCccCCCCEEecCCCCCCcHHHHHHHHHHCCCEEEECCEEEhhhhcCCHHHHHHhhcCCcc------------------
Confidence 46788999999999999999999999999999999999999988765544333333333333
Q ss_pred HHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCcccee
Q psy9514 332 TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411 (611)
Q Consensus 332 a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~ 411 (611)
.++++|++|++|+.+.++|+++. .+|||+||||+|||...+.
T Consensus 63 -------------------------------------~p~i~ql~g~~~~~~~~aa~~~~-~~G~d~IelN~gcP~~~~~ 104 (319)
T TIGR00737 63 -------------------------------------TPISVQLFGSDPDTMAEAAKINE-ELGADIIDINMGCPVPKIT 104 (319)
T ss_pred -------------------------------------ceEEEEEeCCCHHHHHHHHHHHH-hCCCCEEEEECCCCHHHhc
Confidence 35566666666777777777664 3599999999999977666
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHH
Q psy9514 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491 (611)
Q Consensus 412 ~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i 491 (611)
..++|+.|+++|+++.+|+++|++.+++||+||+|.|+.+....+.++++.|+++|+++|+||+|++.+.
T Consensus 105 ~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~---------- 174 (319)
T TIGR00737 105 KKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQG---------- 174 (319)
T ss_pred CCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccccc----------
Confidence 7777888999999999999999999999999999999876555678999999999999999999986655
Q ss_pred HHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcC
Q psy9514 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571 (611)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G 571 (611)
|.++++|++++++.+. .++|||+||||.|++|+.++++.+
T Consensus 175 ---------------------------------------~~~~~~~~~i~~i~~~-~~ipvi~nGgI~~~~da~~~l~~~ 214 (319)
T TIGR00737 175 ---------------------------------------YSGEANWDIIARVKQA-VRIPVIGNGDIFSPEDAKAMLETT 214 (319)
T ss_pred ---------------------------------------CCCchhHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHhh
Confidence 5666778888887665 579999999999999999999766
Q ss_pred CCccEEEEcHHhhhCCchHHHHHc
Q psy9514 572 PSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 572 ~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+||+||||||+|.|||||+++++
T Consensus 215 -gad~VmigR~~l~~P~l~~~~~~ 237 (319)
T TIGR00737 215 -GCDGVMIGRGALGNPWLFRQIEQ 237 (319)
T ss_pred -CCCEEEEChhhhhCChHHHHHHH
Confidence 69999999999999999999975
No 10
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=100.00 E-value=1.9e-41 Score=340.48 Aligned_cols=230 Identities=40% Similarity=0.737 Sum_probs=197.2
Q ss_pred cEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhc
Q psy9514 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM 339 (611)
Q Consensus 260 rivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~ 339 (611)
+++||||++++++|||+||+++|++++||||+.+.+++...+..+.++..+..+
T Consensus 1 ~~~~aPm~~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 54 (231)
T cd02801 1 KLILAPMVGVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKRLRLLTRNPEE-------------------------- 54 (231)
T ss_pred CeEeCCCCCCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHHHHhhccCccC--------------------------
Confidence 479999999999999999999999999999999998887776554444333333
Q ss_pred cceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceecccccccc
Q psy9514 340 AVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGL 419 (611)
Q Consensus 340 ~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaL 419 (611)
.++++|++|++++.+.++|+++. .+|||+||||+|||+.+.++++||+++
T Consensus 55 -----------------------------~p~~~qi~g~~~~~~~~aa~~~~-~aG~d~ieln~g~p~~~~~~~~~G~~l 104 (231)
T cd02801 55 -----------------------------RPLIVQLGGSDPETLAEAAKIVE-ELGADGIDLNMGCPSPKVTKGGAGAAL 104 (231)
T ss_pred -----------------------------CCEEEEEcCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCHHHHhCCCeeehh
Confidence 35666666677777777777775 369999999999999999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcc
Q psy9514 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499 (611)
Q Consensus 420 l~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~ 499 (611)
+++++++.+++++++++++.||+||+|.|+... .++.++++.++++|++.|+||+|++.++
T Consensus 105 ~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~-~~~~~~~~~l~~~Gvd~i~v~~~~~~~~------------------ 165 (231)
T cd02801 105 LKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE-EETLELAKALEDAGASALTVHGRTREQR------------------ 165 (231)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc-hHHHHHHHHHHHhCCCEEEECCCCHHHc------------------
Confidence 999999999999999999999999999987653 4788999999999999999999986554
Q ss_pred cCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 500 ~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
+.++++|++++++.+ ..++||++||||.|++|+.++++.+ ++|+||+
T Consensus 166 -------------------------------~~~~~~~~~~~~i~~-~~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~i 212 (231)
T cd02801 166 -------------------------------YSGPADWDYIAEIKE-AVSIPVIANGDIFSLEDALRCLEQT-GVDGVMI 212 (231)
T ss_pred -------------------------------CCCCCCHHHHHHHHh-CCCCeEEEeCCCCCHHHHHHHHHhc-CCCEEEE
Confidence 445567888877765 4689999999999999999999986 6999999
Q ss_pred cHHhhhCCchHHHHHccc
Q psy9514 580 GRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 580 GRgaL~dP~lf~ei~~g~ 597 (611)
||++|.|||||+++++..
T Consensus 213 gr~~l~~P~~~~~~~~~~ 230 (231)
T cd02801 213 GRGALGNPWLFREIKELL 230 (231)
T ss_pred cHHhHhCCHHHHhhhhcc
Confidence 999999999999998753
No 11
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=100.00 E-value=8.9e-37 Score=324.86 Aligned_cols=299 Identities=11% Similarity=0.086 Sum_probs=215.5
Q ss_pred CCcccccCeeecCcEEeccCCCCCC---------HHHHHHHHHcCCCEEEecCcccchhhcCChh-----------hhHh
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTVGN---------LPFRRLCKKWGADITCSEMAVATELLKSSPQ-----------EWAL 306 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~gn---------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~-----------e~~l 306 (611)
|+|+++++++++||++||||++... +-|..-..+.|++||+||.+.+.+...+.+. .|+.
T Consensus 2 f~P~~i~~~~lkNRiv~apm~~~~~~~G~~t~~~~~~y~~~A~gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~ 81 (343)
T cd04734 2 LSPLQLGHLTLRNRIVSTAHATNYAEDGLPSERYIAYHEERARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRR 81 (343)
T ss_pred CCCeeeCCEEecCCeEECCcccccccCCCCCHHHHHHHHHHHhCCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHH
Confidence 7899999999999999999974321 2344444567999999999999866544432 3433
Q ss_pred H--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcch--hhccCCCccccccccceeeecccCchHH
Q psy9514 307 I--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF--IYKQGSGSGLLQRANLFGVQLCGNNPYV 382 (611)
Q Consensus 307 ~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~--~~~~~~~~~l~~~~~~~ivQi~g~~p~~ 382 (611)
+ ..|..+.++++||+|.+....... ..... -.|.+. ........+|+.+++.-++ ++
T Consensus 82 l~~~vh~~g~~~~~Ql~H~G~~~~~~~-------~~~~~-----~~ps~~~~~~~~~~~~~mt~~eI~~ii-------~~ 142 (343)
T cd04734 82 LAEAVHAHGAVIMIQLTHLGRRGDGDG-------SWLPP-----LAPSAVPEPRHRAVPKAMEEEDIEEII-------AA 142 (343)
T ss_pred HHHHHHhcCCeEEEeccCCCcCcCccc-------CCCcc-----cCCCCCCCCCCCCCCCcCCHHHHHHHH-------HH
Confidence 3 337778888889888764332100 00000 011110 0011122345554444333 56
Q ss_pred HHHHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCC-
Q psy9514 383 LTKCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD- 452 (611)
Q Consensus 383 ~~~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~- 452 (611)
|++||+++. .+|||+||||++ ||..|.++++||++|++|.+++.+|+++|+++++.+++|++|++..+.
T Consensus 143 f~~AA~ra~-~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~ 221 (343)
T cd04734 143 FADAARRCQ-AGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHH-HcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc
Confidence 777887775 469999999995 588999999999999999999999999999999999999999987652
Q ss_pred -----chHHHHHHHHHHHcC-CCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 453 -----NNIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 453 -----~~~a~~la~~l~~aG-vd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
.+++.++++.|+++| +|+|+||++..... ..+. ...+..
T Consensus 222 ~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~----~~~~-----------------~~~~~~-------------- 266 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTL----LGLA-----------------HVVPSM-------------- 266 (343)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcc----cccc-----------------cccCCC--------------
Confidence 457889999999998 89999987642211 0000 000000
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCccccc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~dis~~e 605 (611)
.+....+|++++.+.+ ..++|||+||+|.++++++++++.+ ++|+||+||++|.||||++++++|+..+|.+|-
T Consensus 267 ---~~~~~~~~~~~~~ik~-~~~ipvi~~G~i~~~~~~~~~l~~~-~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~C~ 340 (343)
T cd04734 267 ---GMPPGPFLPLAARIKQ-AVDLPVFHAGRIRDPAEAEQALAAG-HADMVGMTRAHIADPHLVAKAREGREDDIRPCI 340 (343)
T ss_pred ---CCCcchhHHHHHHHHH-HcCCCEEeeCCCCCHHHHHHHHHcC-CCCeeeecHHhHhCccHHHHHHcCCccCcCcCc
Confidence 0122235666666654 4589999999999999999999998 899999999999999999999999999999885
No 12
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=100.00 E-value=2.6e-35 Score=312.41 Aligned_cols=294 Identities=14% Similarity=0.118 Sum_probs=211.6
Q ss_pred CCCcccccCeeecCcEEeccCCCCC-----C------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hh
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTVG-----N------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QE 303 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~g-----n------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e 303 (611)
=|+|+++++++++||+++|||++.. . +.|..-.++.|++||+||.+.+.+...+.+ ..
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~G~~t~~~~~~y~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~ 82 (337)
T PRK13523 3 LFSPYTIKDVTLKNRIVMSPMCMYSSENKDGKVTNFHLIHYGTRAAGQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEG 82 (337)
T ss_pred CCCCeeECCEeeecccEecccccccccCCCCCCCHHHHHHHHHHHcCCCeEEEECCeEECccccCCCCceecCCHHHHHH
Confidence 3899999999999999999997532 1 234444557799999999998876544322 22
Q ss_pred hHhH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchH
Q psy9514 304 WALI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPY 381 (611)
Q Consensus 304 ~~l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~ 381 (611)
|+.+ ..|..+..+++||.|.+..... .. ..+ -....|.+. ......+|+.+++.-+ .+
T Consensus 83 ~r~l~d~vh~~G~~i~~QL~H~G~~~~~--------~~--~~~-~ps~~~~~~--~~~~p~~mt~eeI~~i-------i~ 142 (337)
T PRK13523 83 LHKLVTFIHDHGAKAAIQLAHAGRKAEL--------EG--DIV-APSAIPFDE--KSKTPVEMTKEQIKET-------VL 142 (337)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCCC--------CC--Ccc-CCCCCCCCC--CCCCCCcCCHHHHHHH-------HH
Confidence 3333 3377778888888776643210 00 000 000011110 1112234554444444 35
Q ss_pred HHHHHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcccc--
Q psy9514 382 VLTKCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH-- 450 (611)
Q Consensus 382 ~~~~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~-- 450 (611)
.|.++|+++. .+|||+||||++ ||..|.+.+.||++|++|.+++.+|+++|+++++.||.||++....
T Consensus 143 ~f~~aA~~a~-~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 143 AFKQAAVRAK-EAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHH-HcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 5667777765 369999999999 5999999999999999999999999999999998899998886211
Q ss_pred --CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 451 --KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 451 --~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
.+.+++.++++.|+++|+|+|+||+++.... ...
T Consensus 222 ~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~---~~~----------------------------------------- 257 (337)
T PRK13523 222 GGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPA---RID----------------------------------------- 257 (337)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC---CCC-----------------------------------------
Confidence 1346788999999999999999999863210 000
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCc---cccc
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI---YAIV 605 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~di---s~~e 605 (611)
.....+|.+.+++. ..+++|||++|+|.|+++++++|+.| .+|+||+||++|+||||+++++++...++ +.|.
T Consensus 258 --~~~~~~~~~~~~ik-~~~~ipVi~~G~i~~~~~a~~~l~~g-~~D~V~~gR~~iadP~~~~k~~~~~~~~~~~~~~~~ 333 (337)
T PRK13523 258 --VYPGYQVPFAEHIR-EHANIATGAVGLITSGAQAEEILQNN-RADLIFIGRELLRNPYFPRIAAKELGFEIEAPKQYE 333 (337)
T ss_pred --CCccccHHHHHHHH-hhcCCcEEEeCCCCCHHHHHHHHHcC-CCChHHhhHHHHhCccHHHHHHHHcCCCCCCcchhh
Confidence 01122566656554 45689999999999999999999998 89999999999999999999999988877 5577
Q ss_pred ccc
Q psy9514 606 WKW 608 (611)
Q Consensus 606 ~~~ 608 (611)
+.|
T Consensus 334 ~~~ 336 (337)
T PRK13523 334 RAW 336 (337)
T ss_pred hcc
Confidence 777
No 13
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=100.00 E-value=7.4e-35 Score=311.47 Aligned_cols=293 Identities=12% Similarity=0.093 Sum_probs=209.5
Q ss_pred CCcccccCeeecCcEEeccCCC-CC--C------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhhHh
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTT-VG--N------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QEWAL 306 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~-~g--n------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~~l 306 (611)
|+|+++++++|+||+++|||++ .+ . +-|..-.++.|++||+||.+.+++...+.+ ..|..
T Consensus 2 f~P~~ig~~~lkNRiv~~p~~~~~~~~~~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~ 81 (353)
T cd02930 2 LSPLDLGFTTLRNRVLMGSMHTGLEELDDGIDRLAAFYAERARGGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRL 81 (353)
T ss_pred CCCeeECCEEEccccEeCCccccccCCCCCCHHHHHHHHHHhcCCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHH
Confidence 7899999999999999999973 21 1 223333456799999999998876544432 22333
Q ss_pred H--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHH
Q psy9514 307 I--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLT 384 (611)
Q Consensus 307 ~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~ 384 (611)
+ ..|..+.++++||.|.+....... ..+.+.+ +.+. ......+|+.+++.- -.+.|+
T Consensus 82 l~~~vh~~g~~~~~QL~h~G~~~~~~~------~~~ps~~------~~~~--~~~~p~~mt~~eI~~-------i~~~f~ 140 (353)
T cd02930 82 ITDAVHAEGGKIALQILHAGRYAYHPL------CVAPSAI------RAPI--NPFTPRELSEEEIEQ-------TIEDFA 140 (353)
T ss_pred HHHHHHHcCCEEEeeccCCCCCCCCCC------CcCCCCC------CCCC--CCCCCCCCCHHHHHH-------HHHHHH
Confidence 3 337777777788877654321100 0000000 0000 001123444444333 345677
Q ss_pred HHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC----
Q psy9514 385 KCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK---- 451 (611)
Q Consensus 385 ~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~---- 451 (611)
+||+++. .+|||+||||++ ||..|.+++.||++|++|++++.+|+++|+++++.+++|++|++..+
T Consensus 141 ~aA~~a~-~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 141 RCAALAR-EAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred HHHHHHH-HcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 7777765 369999999886 79999999999999999999999999999999999999999998654
Q ss_pred --CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccc
Q psy9514 452 --DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529 (611)
Q Consensus 452 --~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g 529 (611)
+.+++.++++.|+++|+|+|+|+....+.+. +. ..
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~--~~-----------------------------------------~~ 256 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARV--PT-----------------------------------------IA 256 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCC--cc-----------------------------------------cc
Confidence 3467889999999999999999754322110 00 00
Q ss_pred cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCccccc
Q psy9514 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 530 ~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~dis~~e 605 (611)
.+.+.+.|..+.+.+++.+++||+++|+++++++++++++.| .+|+||+||++|.||||++++++|+..+|++|-
T Consensus 257 ~~~~~~~~~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g-~~D~V~~gR~~l~dP~~~~k~~~g~~~~i~~Ci 331 (353)
T cd02930 257 TSVPRGAFAWATAKLKRAVDIPVIASNRINTPEVAERLLADG-DADMVSMARPFLADPDFVAKAAAGRADEINTCI 331 (353)
T ss_pred ccCCchhhHHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCC-CCChhHhhHHHHHCccHHHHHHhCCcccCcCch
Confidence 022334454444444555799999999999999999999998 899999999999999999999999999999873
No 14
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=100.00 E-value=1.8e-34 Score=310.07 Aligned_cols=298 Identities=15% Similarity=0.164 Sum_probs=207.1
Q ss_pred CCCcccccCeeecCcEEeccCCCC-CC------HHHHHHHHHcCCCEEEecCcccchhhcCCh------------hhhHh
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTV-GN------LPFRRLCKKWGADITCSEMAVATELLKSSP------------QEWAL 306 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~-gn------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~------------~e~~l 306 (611)
=|+|+++++++|+||++||||++. +. ..|+...++.|++||+||.+.+.+...+.+ ..|+.
T Consensus 8 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~~~~~~y~~~rA~gG~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~ 87 (370)
T cd02929 8 LFEPIKIGPVTARNRFYQVPHCNGMGYRKPSAQAAMRGIKAEGGWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAA 87 (370)
T ss_pred cCCCccCCCEEeccceEECCcccCcCCCChHHHHHHHHHHhCCCceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHH
Confidence 489999999999999999999753 11 123333456799999999999876544322 12333
Q ss_pred H--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcch-hhccCCCccccccccceeeecccCchHHH
Q psy9514 307 I--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF-IYKQGSGSGLLQRANLFGVQLCGNNPYVL 383 (611)
Q Consensus 307 ~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~-~~~~~~~~~l~~~~~~~ivQi~g~~p~~~ 383 (611)
+ ..|..+.++++||+|.+...... ..... .+. ....|.+. ........+|+.+++.- -.+.|
T Consensus 88 l~~~vh~~G~~i~~QL~H~G~~~~~~------~~~~~-~~~-ps~~~~~~~~~~~~~p~~mt~~eI~~-------ii~~f 152 (370)
T cd02929 88 MTDAVHKHGALAGIELWHGGAHAPNR------ESRET-PLG-PSQLPSEFPTGGPVQAREMDKDDIKR-------VRRWY 152 (370)
T ss_pred HHHHHHHCCCeEEEecccCCCCCCcc------CCCCC-ccC-CCCCCCCccccCCCCCccCCHHHHHH-------HHHHH
Confidence 2 33777777788887766432100 00000 000 00000000 00011123444433333 34567
Q ss_pred HHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC---
Q psy9514 384 TKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--- 451 (611)
Q Consensus 384 ~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--- 451 (611)
++||+++. .+|||+||||++| |..|.+.+.||++|++|.+++.+|+++|+++++.+++|++|++..+
T Consensus 153 ~~AA~ra~-~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~ 231 (370)
T cd02929 153 VDAALRAR-DAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIG 231 (370)
T ss_pred HHHHHHHH-HcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcC
Confidence 77777775 4699999999999 9999999999999999999999999999999999999999998543
Q ss_pred -----CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 452 -----DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 452 -----~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
..+++.++++.|++. +|+|.|+....... +.+
T Consensus 232 ~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~------------------------------------------~~~ 268 (370)
T cd02929 232 PGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWAND------------------------------------------GED 268 (370)
T ss_pred CCCCCCHHHHHHHHHHHHhh-CCEEEecCCCcccc------------------------------------------ccc
Confidence 235677899988876 79999987642100 000
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCccccc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~dis~~e 605 (611)
. ..+.....+.+.+++. +.+++|||++|+|+++++++++++.| ++|+||+||++|.||||++++++|+..+|++|=
T Consensus 269 ~-~~~~~~~~~~~~~~ik-~~~~~pvi~~G~i~~~~~~~~~l~~g-~~D~V~~gR~~ladP~l~~k~~~g~~~~i~~Ci 344 (370)
T cd02929 269 S-RFYPEGHQEPYIKFVK-QVTSKPVVGVGRFTSPDKMVEVVKSG-ILDLIGAARPSIADPFLPKKIREGRIDDIRECI 344 (370)
T ss_pred c-ccCCccccHHHHHHHH-HHCCCCEEEeCCCCCHHHHHHHHHcC-CCCeeeechHhhhCchHHHHHHcCCccccccCC
Confidence 0 0011222355555554 45689999999999999999999998 899999999999999999999999999999873
No 15
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=100.00 E-value=2.6e-34 Score=290.30 Aligned_cols=225 Identities=19% Similarity=0.283 Sum_probs=174.4
Q ss_pred cEEeccCCCCCCHHHHH-HHHHcCCCEE------EecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH-HHH
Q psy9514 260 KLYLSPLTTVGNLPFRR-LCKKWGADIT------CSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL-TKC 331 (611)
Q Consensus 260 rivlAPMt~~gnlpfRr-l~~~~Ga~li------~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~-~~~ 331 (611)
+++||||.+.++.+||+ +|..+|++++ .++|..+..+.+....|+- . .++..+ ...
T Consensus 1 ~~~lApMag~td~~f~~~~~~~~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~---------------~-~~~~~~~~~~ 64 (233)
T cd02911 1 PVALASMAGITDGDFCRKRADHAGLVFLGGYNLDERTIEAARKLVKRGRKEFL---------------P-DDPLEFIEGE 64 (233)
T ss_pred CceeeecCCCcCHHHHHhhCccCCEEEEcccccCHHHHHHHHHHHhcCCcccc---------------c-cchHHHHHHH
Confidence 57999999999999999 7777776554 4555555554433322211 0 001111 111
Q ss_pred HHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCcccee
Q psy9514 332 TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411 (611)
Q Consensus 332 a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~ 411 (611)
...+. ..+.++++|++|++++.+.++|+.+.+ ++|+||||||||+..+.
T Consensus 65 ~~~~~-----------------------------~~~~p~~vqi~g~~~~~~~~aa~~~~~--~~~~ielN~gCP~~~v~ 113 (233)
T cd02911 65 IKALK-----------------------------DSNVLVGVNVRSSSLEPLLNAAALVAK--NAAILEINAHCRQPEMV 113 (233)
T ss_pred HHHhh-----------------------------ccCCeEEEEecCCCHHHHHHHHHHHhh--cCCEEEEECCCCcHHHh
Confidence 11110 113478999999999999999999965 46999999999999999
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHH
Q psy9514 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491 (611)
Q Consensus 412 ~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i 491 (611)
+.|+|++|+.+|+++.+|+++|++ .++||+||+|.|++ ..+.++++.++++|+|+||++.+..
T Consensus 114 ~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~---~~~~~la~~l~~aG~d~ihv~~~~~------------- 176 (233)
T cd02911 114 EAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVD---VDDEELARLIEKAGADIIHVDAMDP------------- 176 (233)
T ss_pred cCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcC---cCHHHHHHHHHHhCCCEEEECcCCC-------------
Confidence 999999999999999999999998 59999999999975 4577999999999999877654321
Q ss_pred HHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcC
Q psy9514 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571 (611)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G 571 (611)
...++|+.|+++. .++|||+||||.|++|+.++++.|
T Consensus 177 ----------------------------------------g~~ad~~~I~~i~---~~ipVIgnGgI~s~eda~~~l~~G 213 (233)
T cd02911 177 ----------------------------------------GNHADLKKIRDIS---TELFIIGNNSVTTIESAKEMFSYG 213 (233)
T ss_pred ----------------------------------------CCCCcHHHHHHhc---CCCEEEEECCcCCHHHHHHHHHcC
Confidence 1245777777764 579999999999999999999976
Q ss_pred CCccEEEEcHHhhhCCchHHHHHc
Q psy9514 572 PSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 572 ~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
||+|||||+ .+||+|++|++
T Consensus 214 --aD~VmiGR~--~~p~~~~~~~~ 233 (233)
T cd02911 214 --ADMVSVARA--SLPENIEWLVE 233 (233)
T ss_pred --CCEEEEcCC--CCchHHHHhhC
Confidence 999999999 99999999864
No 16
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.4e-34 Score=308.19 Aligned_cols=298 Identities=13% Similarity=0.173 Sum_probs=203.2
Q ss_pred CCcccccCeeecCcEEeccCCCC--C-C--------HHHHHHHHHcCCCEEEecCcccchhhcC----C-------h---
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTV--G-N--------LPFRRLCKKWGADITCSEMAVATELLKS----S-------P--- 301 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~--g-n--------lpfRrl~~~~Ga~li~tEm~~~~~l~~g----~-------~--- 301 (611)
|+|+++++++|+||+++|||++. . . +.|..-.++.|++||+||.+.+.+...+ . .
T Consensus 2 f~P~~ig~~~lkNRiv~apm~~~~~~~~dg~~t~~~~~yy~~rA~gG~GlIi~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (382)
T cd02931 2 FEPIKIGKVEIKNRFAMAPMGPLGLADNDGAFNQRGIDYYVERAKGGTGLIITGVTMVDNEIEQFPMPSLPCPTYNPTAF 81 (382)
T ss_pred CCCeeECCEEEeCCcEeCCcCcccccCCCCCCCHHHHHHHHHHhcCCCCEEEEEEEEeCCcccccCCCCccccccCCHHH
Confidence 78999999999999999999742 1 1 2344445567999999999888654211 0 0
Q ss_pred -hhhHhH--hhccCCCeEEEEecCC-ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeeccc
Q psy9514 302 -QEWALI--KRHESEDLFGVQLCGN-NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG 377 (611)
Q Consensus 302 -~e~~l~--~~h~~e~~~~vQi~g~-~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g 377 (611)
..|+.+ ..|..+.++++||.|. +........ ... ..+. ....|.+. .......+|+.+++.-
T Consensus 82 i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~---~~~---~~~~-ps~~~~~~-~~~~~p~~mt~~eI~~------ 147 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFL---GED---KPVA-PSPIPNRW-LPEITCRELTTEEVET------ 147 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCcCCCccCcccc---CCC---CccC-CCCCCCCc-CCCCCCCcCCHHHHHH------
Confidence 123333 2366677777777654 322110000 000 0000 00001100 0001123444433333
Q ss_pred CchHHHHHHHHHHHHhcccceEEecc---CC-------CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEE
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNL---GC-------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKT 445 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~---gC-------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKi 445 (611)
-.+.|.+||+++.+ +|||+||||+ || |..|.+.+.||++|++|++++.+||++|+++++ .||.+|+
T Consensus 148 -ii~~f~~AA~ra~~-AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri 225 (382)
T cd02931 148 -FVGKFGESAVIAKE-AGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRY 225 (382)
T ss_pred -HHHHHHHHHHHHHH-cCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEE
Confidence 34677778877763 6999999998 55 789999999999999999999999999999995 5788887
Q ss_pred Ecc-----cc-------------CCchHHHHHHHHHHHcCCCEEEEEcccccccc-ccCcChhHHHHHhhhcccCchhhh
Q psy9514 446 RTG-----IH-------------KDNNIIHNFMPKFRDWGASLITLHGRTREQRY-TKQADWDYIEKCAQLCSRDNNIIH 506 (611)
Q Consensus 446 R~g-----~~-------------~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~-~~~adw~~i~~~~~~~~~~~~~~~ 506 (611)
+.- +. .+.+++.++++.|+++|+|+|+||+++..+.+ ..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~------------------- 286 (382)
T cd02931 226 SVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPM------------------- 286 (382)
T ss_pred echhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCc-------------------
Confidence 741 00 12356789999999999999999998743321 00000
Q ss_pred hcchhhHhcCCceEEeccccccccccCCcc-HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQAD-WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~-~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+.+.+. +.+++.+ ++.+++|||++|+|.++++++++++.| .+|+||+||++|.
T Consensus 287 ------------------------~~~~~~~~~~~~~i-k~~~~~pvi~~G~i~~~~~~~~~l~~g-~~D~V~~gR~~la 340 (382)
T cd02931 287 ------------------------YQKKGMYLPYCKAL-KEVVDVPVIMAGRMEDPELASEAINEG-IADMISLGRPLLA 340 (382)
T ss_pred ------------------------cCCcchhHHHHHHH-HHHCCCCEEEeCCCCCHHHHHHHHHcC-CCCeeeechHhHh
Confidence 222233 3444554 445689999999999999999999998 8999999999999
Q ss_pred CCchHHHHHcccCCCccccc
Q psy9514 586 KPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 586 dP~lf~ei~~g~~~dis~~e 605 (611)
||||++++++|+..+|++|-
T Consensus 341 dP~l~~k~~~g~~~~i~~Ci 360 (382)
T cd02931 341 DPDVVNKIRRGRFKNIRPCI 360 (382)
T ss_pred CccHHHHHHcCCcccCcCCh
Confidence 99999999999999999873
No 17
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=3.3e-34 Score=306.41 Aligned_cols=291 Identities=15% Similarity=0.104 Sum_probs=206.4
Q ss_pred CCcccccC-eeecCcEEeccCCCCC----CH------HHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhh
Q psy9514 247 IKNSEKKK-IDWQGKLYLSPLTTVG----NL------PFRRLCKKWGADITCSEMAVATELLKSSP-----------QEW 304 (611)
Q Consensus 247 f~p~ei~~-l~l~nrivlAPMt~~g----nl------pfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~ 304 (611)
|+|+++++ ++|+||+++|||++.. .. -|..-.++ |++||+||.+.+.+...+.+ ..|
T Consensus 2 f~P~~ig~g~~lkNRiv~apm~~~~~~~~G~~t~~~~~yy~~rA~-g~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~ 80 (353)
T cd04735 2 FEPFTLKNGVTLKNRFVMAPMTTYSSNPDGTITDDELAYYQRRAG-GVGMVITGATYVSPSGIGFEGGFSADDDSDIPGL 80 (353)
T ss_pred CCCEEcCCCeEEeCcceecccccCccCCCCCCCHHHHHHHHHHhC-CCCEEEECceEECcccCcCCCCceecChhhhHHH
Confidence 78999998 9999999999997421 11 22222234 59999999999886544322 234
Q ss_pred HhH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhh-ccCCCccccccccceeeecccCchH
Q psy9514 305 ALI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY-KQGSGSGLLQRANLFGVQLCGNNPY 381 (611)
Q Consensus 305 ~l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~-~~~~~~~l~~~~~~~ivQi~g~~p~ 381 (611)
..+ ..|.++..+.+||.|.+....... .. +.. .+ ..++++... ......+|+.+++.- -.+
T Consensus 81 ~~l~~~vh~~G~~i~~QL~h~G~~~~~~~----~~-~~~-~~---~ps~~~~~~~~~~~p~~mt~~eI~~-------ii~ 144 (353)
T cd04735 81 RKLAQAIKSKGAKAILQIFHAGRMANPAL----VP-GGD-VV---SPSAIAAFRPGAHTPRELTHEEIED-------IID 144 (353)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCCCCccc----cC-CCc-ee---cCCCCcccCCCCCCCccCCHHHHHH-------HHH
Confidence 433 337777888888887764422110 00 000 00 000110000 011223455444443 345
Q ss_pred HHHHHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcC----CCEEEEEEcc
Q psy9514 382 VLTKCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS----LPITVKTRTG 448 (611)
Q Consensus 382 ~~~~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~----~PvtVKiR~g 448 (611)
.|++||+++. .+|||+||||++ ||..|.+++.||++|++|.+++.+|+++|+++++ .+++|++|++
T Consensus 145 ~f~~aA~~a~-~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s 223 (353)
T cd04735 145 AFGEATRRAI-EAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFS 223 (353)
T ss_pred HHHHHHHHHH-HcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEEC
Confidence 6777888876 469999999997 5999999999999999999999999999999998 7899999998
Q ss_pred ccCC------chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEe
Q psy9514 449 IHKD------NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 449 ~~~~------~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~iti 522 (611)
..+. .+++.++++.|+++|+|+|+||++..... .
T Consensus 224 ~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~----~------------------------------------ 263 (353)
T cd04735 224 PEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRK----S------------------------------------ 263 (353)
T ss_pred cccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccc----c------------------------------------
Confidence 6542 35788999999999999999998753211 0
Q ss_pred ccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCc
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~di 601 (611)
.+.....+.++..+.+.. .++|||++|+|+|+++++++++.| +|+||+||++|.||+|++++++|+.+||
T Consensus 264 -------~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~g--aD~V~~gR~liadPdl~~k~~~G~~~~i 334 (353)
T cd04735 264 -------RRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETG--ADLVAIGRGLLVDPDWVEKIKEGREDEI 334 (353)
T ss_pred -------ccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC--CChHHHhHHHHhCccHHHHHHcCChhhh
Confidence 011111233434333332 379999999999999999999986 9999999999999999999999999999
Q ss_pred ccc
Q psy9514 602 YAI 604 (611)
Q Consensus 602 s~~ 604 (611)
+.|
T Consensus 335 r~c 337 (353)
T cd04735 335 NLE 337 (353)
T ss_pred hhc
Confidence 987
No 18
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.8e-33 Score=299.11 Aligned_cols=291 Identities=13% Similarity=0.141 Sum_probs=198.7
Q ss_pred CCcccccC-eeecCcEEeccCCCC-C---C------HHHHHHHHHcCCCEEEecCcccchhhcCCh--------------
Q psy9514 247 IKNSEKKK-IDWQGKLYLSPLTTV-G---N------LPFRRLCKKWGADITCSEMAVATELLKSSP-------------- 301 (611)
Q Consensus 247 f~p~ei~~-l~l~nrivlAPMt~~-g---n------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-------------- 301 (611)
|+|+++++ ++|+||++||||++. + . +.|..-.++.|++||+||.+.+.+..+..+
T Consensus 2 f~P~~i~~~~~lkNRi~~~p~~~~~~~~~g~~~~~~~~~y~~rA~gG~glii~~~~~v~~~~~~~~~~~~~~~~~~d~~i 81 (338)
T cd04733 2 GQPLTLPNGATLPNRLAKAAMSERLADGRGLPTPELIRLYRRWAEGGIGLIITGNVMVDPRHLEEPGIIGNVVLESGEDL 81 (338)
T ss_pred CCCeEcCCCcEEcccceecccccccccCCCCCCHHHHHHHHHHhCCCceEEEEeeEEECcccccCCCcCCCcccCCHHHH
Confidence 78999995 999999999999752 1 1 234444456799999999988876544332
Q ss_pred hhhHhH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCc
Q psy9514 302 QEWALI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379 (611)
Q Consensus 302 ~e~~l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~ 379 (611)
..|..+ ..|..+.++++||.|.+....... .. ..+ .....|.+..+.. .......+..+.....
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~-------~~-~~~-~ps~~~~~~~~~~-----~~~~p~~mt~~eI~~~ 147 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGRQSPAGL-------NQ-NPV-APSVALDPGGLGK-----LFGKPRAMTEEEIEDV 147 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCcCCCccC-------CC-CCc-CCCCCcCcccccc-----cCCCCCcCCHHHHHHH
Confidence 123322 337777777777777654321100 00 000 0000000000000 0001122333444455
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEc-
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRT- 447 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~- 447 (611)
.+.|++||+++. .+|||+||||++| |..|.+++.||++|++|++++.+||++|++++| .||.||+..
T Consensus 148 i~~~~~aA~ra~-~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~ 226 (338)
T cd04733 148 IDRFAHAARLAQ-EAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA 226 (338)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH
Confidence 678888888876 5699999999998 999999999999999999999999999999996 566666642
Q ss_pred -----cccCCchHHHHHHHHHHHcCCCEEEEEcccccccccc-CcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 448 -----GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK-QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 448 -----g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~-~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
|+ +.+++.++++.|+++|+++|+||+|+..+.+.. ..++
T Consensus 227 ~~~~~g~--~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~--------------------------------- 271 (338)
T cd04733 227 DFQRGGF--TEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKE--------------------------------- 271 (338)
T ss_pred HcCCCCC--CHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccC---------------------------------
Confidence 23 346789999999999999999999975432100 0000
Q ss_pred eccccccccccCCc-cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 522 LHGRTREQRYTKQA-DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 522 ihgrtr~g~~~~~a-~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
..+..++ .+++.+++.+ .+++||+++|+|.++++++++++.| .+|+|++||++|.||||++++++|
T Consensus 272 -------~~~~~~~~~~~~~~~ik~-~v~iPVi~~G~i~t~~~a~~~l~~g-~aD~V~lgR~~iadP~~~~k~~~g 338 (338)
T cd04733 272 -------STIAREAYFLEFAEKIRK-VTKTPLMVTGGFRTRAAMEQALASG-AVDGIGLARPLALEPDLPNKLLAG 338 (338)
T ss_pred -------CccccchhhHHHHHHHHH-HcCCCEEEeCCCCCHHHHHHHHHcC-CCCeeeeChHhhhCccHHHHHhcC
Confidence 0011122 3455555544 4689999999999999999999998 899999999999999999999876
No 19
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=100.00 E-value=5.2e-33 Score=296.06 Aligned_cols=300 Identities=15% Similarity=0.124 Sum_probs=216.6
Q ss_pred CCCcccccCeeecCcEEeccCCCCCC----------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhh
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTVGN----------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QEW 304 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~gn----------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~ 304 (611)
-|+|+++++++|+||++||||++... +.|+.-.++.|++|++||++.+.+-.++.+ ..|
T Consensus 6 LF~P~~lg~~~L~NRivmaPm~~~~a~~dG~pt~~~~~yy~~RA~gG~Glii~~~~~v~~~g~~~~~~~~l~~d~~i~~~ 85 (363)
T COG1902 6 LFEPLKLGGLTLKNRIVMAPMTRNRATPDGLPTDLLAEYYAERAKGGAGLIITEATAVDPGGRGYPGQPGLWSDAQIPGL 85 (363)
T ss_pred cCCCeeECCEEeccceeecCcccccccCCCCCCHHHHHHHHHHhcCCCCEEEEeeEeeCcccccCCCCCccCChhHhHHH
Confidence 59999999999999999999986322 345555567789999999888877665442 234
Q ss_pred HhH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHH
Q psy9514 305 ALI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382 (611)
Q Consensus 305 ~l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~ 382 (611)
..+ ..|..+.++.+||.|.+.......... ......+.+....+ .....++|+.+++.-+++ +
T Consensus 86 ~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~-~~~vapS~~~~~~~-------~~~~pr~mt~~eI~~ii~-------~ 150 (363)
T COG1902 86 KRLTEAVHAHGAKIFIQLWHAGRKARASHPWL-PSAVAPSAIPAPGG-------RRATPRELTEEEIEEVIE-------D 150 (363)
T ss_pred HHHHHHHHhcCCeEEEEeccCcccccccccCC-CcccCCCccccccC-------CCCCCccCCHHHHHHHHH-------H
Confidence 443 338888899999988774422111000 00000111111110 011234666666665554 5
Q ss_pred HHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCC-
Q psy9514 383 LTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD- 452 (611)
Q Consensus 383 ~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~- 452 (611)
|++||+++.+ +|||+||||.+| |..|.+++.||++|+||.+|+.|||++|+++++..++|-+|++..+.
T Consensus 151 f~~AA~rA~~-AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~ 229 (363)
T COG1902 151 FARAARRAKE-AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFF 229 (363)
T ss_pred HHHHHHHHHH-cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccC
Confidence 6667777653 699999999998 99999999999999999999999999999999987777778775443
Q ss_pred ------chHHHHHHHHHHHcC-CCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 453 ------NNIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 453 ------~~~a~~la~~l~~aG-vd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
.+++.++++.|++.| +|+|++++...... + .+.
T Consensus 230 ~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~----------------------------~--------~~~---- 269 (363)
T COG1902 230 DGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERG----------------------------G--------TIT---- 269 (363)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCC----------------------------C--------Ccc----
Confidence 247899999999999 79999988753210 0 000
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCccccc
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~dis~~e 605 (611)
+..++.....+...+....+|||++|+|++++.+++++++| .+|.|.+||++|+||+|..++++|+.++|..|-
T Consensus 270 -----~~~~~~~~~~a~~i~~~~~~pvi~~G~i~~~~~Ae~~l~~g-~aDlVa~gR~~ladP~~~~k~~~g~~~~~~~~~ 343 (363)
T COG1902 270 -----VSGPGYQVEFAARIKKAVRIPVIAVGGINDPEQAEEILASG-RADLVAMGRPFLADPDLVLKAAEGRELEIRPCI 343 (363)
T ss_pred -----ccccchhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcC-CCCEEEechhhhcCccHHHHHHcCCCccccccc
Confidence 11122223333334444579999999999999999999998 899999999999999999999999999888876
Q ss_pred cc
Q psy9514 606 WK 607 (611)
Q Consensus 606 ~~ 607 (611)
|.
T Consensus 344 ~~ 345 (363)
T COG1902 344 YC 345 (363)
T ss_pred cc
Confidence 53
No 20
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=1.4e-32 Score=293.43 Aligned_cols=290 Identities=13% Similarity=0.160 Sum_probs=202.0
Q ss_pred CCcccccCeeecCcEEeccCCCCC---C------HHHHHHHHHcCCCEEEecCcccchhhc-C---Ch--------hhhH
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTVG---N------LPFRRLCKKWGADITCSEMAVATELLK-S---SP--------QEWA 305 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~g---n------lpfRrl~~~~Ga~li~tEm~~~~~l~~-g---~~--------~e~~ 305 (611)
|+|+++++++++||++++||++.. . +-|.+-.++.|++||+||.+.+++... + .. ..|+
T Consensus 2 f~Pl~ig~~~lkNRiv~spm~~~~~~~G~~t~~~~~yy~~rA~GG~GlIite~~~V~~~~~~~~~~~~~~~~d~~i~~~~ 81 (361)
T cd04747 2 FTPFTLKGLTLPNRIVMAPMTRSFSPGGVPGQDVAAYYRRRAAGGVGLIITEGTAVDHPAASGDPNVPRFHGEDALAGWK 81 (361)
T ss_pred CCCeeECCEEeeCCeEEcCcccCcCCCCCCCHHHHHHHHHHhcCCccEEEecceEeccccccCCCCCCccCCHHHHHHHH
Confidence 789999999999999999997531 1 233333456799999999888863321 1 11 2233
Q ss_pred hH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhh-ccCCCccccccccceeeecccCchHH
Q psy9514 306 LI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY-KQGSGSGLLQRANLFGVQLCGNNPYV 382 (611)
Q Consensus 306 l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~-~~~~~~~l~~~~~~~ivQi~g~~p~~ 382 (611)
.+ ..|..+.++++||.|.+......... ...... -+|.+... ......+|+.+++.-+ .+.
T Consensus 82 ~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~----~~~~~~-----~~ps~~~~~~~~~p~~mt~~eI~~i-------i~~ 145 (361)
T cd04747 82 KVVDEVHAAGGKIAPQLWHVGAMRKLGTPP----FPDVPP-----LSPSGLVGPGKPVGREMTEADIDDV-------IAA 145 (361)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCcCcccCc----cCCCce-----eCCCCCCcCCCCCCccCCHHHHHHH-------HHH
Confidence 32 34777888888888776432211000 000000 01111100 0111234444444433 367
Q ss_pred HHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEcc---
Q psy9514 383 LTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTG--- 448 (611)
Q Consensus 383 ~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g--- 448 (611)
|.+||+++. .+|||+||||++| |..|.++++||++|++|.+++.+||++|++++| .||.||+...
T Consensus 146 f~~AA~~a~-~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~ 224 (361)
T cd04747 146 FARAAADAR-RLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQ 224 (361)
T ss_pred HHHHHHHHH-HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccccc
Confidence 778888775 4699999999999 999999999999999999999999999999996 5666666520
Q ss_pred -c----cCCchHHHHHHHHHHHcCCCEEEEEcccc-ccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEe
Q psy9514 449 -I----HKDNNIIHNFMPKFRDWGASLITLHGRTR-EQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 449 -~----~~~~~~a~~la~~l~~aGvd~ItvhgR~r-~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~iti 522 (611)
. ..+.+++..+++.|++.|+|+|+++.+.. .+.
T Consensus 225 ~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~----------------------------------------- 263 (361)
T cd04747 225 DYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPE----------------------------------------- 263 (361)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCC-----------------------------------------
Confidence 0 02335677889999999999988866521 111
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCC------------------CCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI------------------LSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI------------------~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
+.+ .++.+...+ ++..++||+++|+| .|+++++++++.| .||+||+||++|
T Consensus 264 --------~~~-~~~~~~~~~-k~~~~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g-~~D~V~~gR~~i 332 (361)
T cd04747 264 --------FEG-SELNLAGWT-KKLTGLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERG-EFDLVAVGRALL 332 (361)
T ss_pred --------cCc-cchhHHHHH-HHHcCCCEEEECCcccccccccccccccccccCCHHHHHHHHHCC-CCCeehhhHHHH
Confidence 211 234444444 44568999999999 6999999999998 899999999999
Q ss_pred hCCchHHHHHcccCCCccccc
Q psy9514 585 IKPWIFQEIKEKKLFDIYAIV 605 (611)
Q Consensus 585 ~dP~lf~ei~~g~~~dis~~e 605 (611)
.||||++++++|+..+|+++-
T Consensus 333 adP~~~~k~~~g~~~~Ir~~~ 353 (361)
T cd04747 333 SDPAWVAKVREGRLDELIPFS 353 (361)
T ss_pred hCcHHHHHHHcCCcccccCCC
Confidence 999999999999999999875
No 21
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=100.00 E-value=4.9e-32 Score=287.80 Aligned_cols=288 Identities=12% Similarity=0.093 Sum_probs=196.9
Q ss_pred CCcccccCeeecCcEEeccCCCCC----CHH------HHHHHHHcCCCEEEecCcccchhhcCChh-----------hhH
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTVG----NLP------FRRLCKKWGADITCSEMAVATELLKSSPQ-----------EWA 305 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~g----nlp------fRrl~~~~Ga~li~tEm~~~~~l~~g~~~-----------e~~ 305 (611)
|+|+++++++|+||+++|||++.. ..| |..-.++ | +||+||.+.+++..++.+. .|.
T Consensus 3 f~P~~ig~~~lkNRiv~apm~~~~~~~~G~~t~~~~~~y~~rA~-g-glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr 80 (338)
T cd02933 3 FSPLKLGNLTLKNRIVMAPLTRSRADPDGVPTDLMAEYYAQRAS-A-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWK 80 (338)
T ss_pred CCCceeCCEeecCCcEECCCCccccCCCCCCCHHHHHHHHHHhc-C-ceEEeCceeeCccccCCCCCCccCCHHHHHHHH
Confidence 899999999999999999997421 122 2222222 6 9999999999876554332 233
Q ss_pred hH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccC----CCCcchhhccCCCccccccccceeeecccCc
Q psy9514 306 LI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL----GCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379 (611)
Q Consensus 306 l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~----gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~ 379 (611)
.+ ..|..+.++++||.|.+..........-....+.+.+.... .++. .......+|+.+++.- -
T Consensus 81 ~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~~~---~~~~~p~~mt~~eI~~-------i 150 (338)
T cd02933 81 KVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVFTPAGK---VPYPTPRALTTEEIPG-------I 150 (338)
T ss_pred HHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCCccccccccc---CCCCCCCCCCHHHHHH-------H
Confidence 22 33777788888887766432211000000000000000000 0000 0000122333333332 3
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCC-CEEEEEEccc
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL-PITVKTRTGI 449 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~-PvtVKiR~g~ 449 (611)
.+.|+++|+++. .+|||+||||++| |..|.+.+.||++|++|.+++.+|+++|+++++. ||.+|++...
T Consensus 151 i~~f~~aA~~a~-~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~ 229 (338)
T cd02933 151 VADFRQAARNAI-EAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFG 229 (338)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccc
Confidence 456777887776 4699999999999 9999999999999999999999999999999975 7777765421
Q ss_pred -------cCCchHHHHHHHHHHHcCCCEEEEE-ccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 450 -------HKDNNIIHNFMPKFRDWGASLITLH-GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 450 -------~~~~~~a~~la~~l~~aGvd~Itvh-gR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
..+.+++.++++.|++.|+|+|+|+ |+...+
T Consensus 230 ~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~----------------------------------------- 268 (338)
T cd02933 230 TFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN----------------------------------------- 268 (338)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-----------------------------------------
Confidence 1234677899999999999999995 443110
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCCc
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~di 601 (611)
....++.+.+++.+. .++|||++|+|. +++++++++.| ++|+||+||++|.||||++++++|+.+.-
T Consensus 269 ----------~~~~~~~~~~~ik~~-~~ipvi~~G~i~-~~~a~~~l~~g-~~D~V~~gR~~ladP~~~~k~~~g~~~~~ 335 (338)
T cd02933 269 ----------PEDQPPDFLDFLRKA-FKGPLIAAGGYD-AESAEAALADG-KADLVAFGRPFIANPDLVERLKNGAPLNE 335 (338)
T ss_pred ----------ccccchHHHHHHHHH-cCCCEEEECCCC-HHHHHHHHHcC-CCCEEEeCHhhhhCcCHHHHHhcCCCCCC
Confidence 122355666665554 589999999997 99999999998 89999999999999999999999998764
No 22
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=100.00 E-value=2.8e-32 Score=288.25 Aligned_cols=289 Identities=15% Similarity=0.105 Sum_probs=200.6
Q ss_pred CCcccccCeeecCcEEeccCCCCC----C------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhhH
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTVG----N------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QEWA 305 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~g----n------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~~ 305 (611)
|+|+++++++|+||++||||++.. . +.|..-.++.|++||+||.+.+++...+.+ ..|+
T Consensus 1 f~p~~i~~~~l~NR~~~~p~~~~~~~~~g~~~~~~~~~y~~ra~gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (327)
T cd02803 1 FSPIKIGGLTLKNRIVMAPMTENMATEDGTPTDELIEYYEERAKGGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLR 80 (327)
T ss_pred CCCcccCCEeeccccEecccccccccCCCCCCHHHHHHHHHHhCcCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHH
Confidence 789999999999999999998521 1 223333446799999999999987655432 2344
Q ss_pred hH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHH
Q psy9514 306 LI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVL 383 (611)
Q Consensus 306 l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~ 383 (611)
.+ ..|..+.++++||.|.+......... ....+.+ +++.........+|+.+++. .-.+.|
T Consensus 81 ~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~--~~~~~~s--------~~~~~~~~~~~~~mt~~ei~-------~~i~~~ 143 (327)
T cd02803 81 KLTEAVHAHGAKIFAQLAHAGRQAQPNLTG--GPPPAPS--------AIPSPGGGEPPREMTKEEIE-------QIIEDF 143 (327)
T ss_pred HHHHHHHhCCCHhhHHhhCCCcCCCCcCCC--CCccCCC--------CCCCCCCCCCCCcCCHHHHH-------HHHHHH
Confidence 33 33677777777777665332111000 0000000 00000011122344433333 344677
Q ss_pred HHHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEcccc--
Q psy9514 384 TKCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIH-- 450 (611)
Q Consensus 384 ~~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~-- 450 (611)
+++|+++. .+|||+||||++ ||..|.+.+.||++|++|++++.+++++|+++++ +||.||++....
T Consensus 144 ~~aA~~a~-~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~ 222 (327)
T cd02803 144 AAAARRAK-EAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVP 222 (327)
T ss_pred HHHHHHHH-HcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCC
Confidence 78888776 469999999998 6888999999999999999999999999999994 677777765321
Q ss_pred --CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 451 --KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 451 --~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
.+.+++.++++.|++.|+++|+|+++...+.+... ..
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~-----------------------------------------~~ 261 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPII-----------------------------------------PP 261 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccc-----------------------------------------CC
Confidence 13467889999999999999999998744321000 00
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.......++++++.+.+. .++||+++|+|.|+++++++++.+ ++|+||+||++|.||||++++++|
T Consensus 262 ~~~~~~~~~~~~~~ir~~-~~iPVi~~Ggi~t~~~a~~~l~~g-~aD~V~igR~~ladP~l~~k~~~g 327 (327)
T cd02803 262 PYVPEGYFLELAEKIKKA-VKIPVIAVGGIRDPEVAEEILAEG-KADLVALGRALLADPDLPNKAREG 327 (327)
T ss_pred CCCCcchhHHHHHHHHHH-CCCCEEEeCCCCCHHHHHHHHHCC-CCCeeeecHHHHhCccHHHHHhcC
Confidence 001123456666666554 589999999999999999999997 799999999999999999999875
No 23
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=99.98 E-value=2.4e-32 Score=290.78 Aligned_cols=300 Identities=14% Similarity=0.114 Sum_probs=193.0
Q ss_pred CCcccccCeeecCcEEeccCCCC-----CCH------HHHHHHHHcCCCEEEecCcccchhhcCChh-----------hh
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTV-----GNL------PFRRLCKKWGADITCSEMAVATELLKSSPQ-----------EW 304 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~-----gnl------pfRrl~~~~Ga~li~tEm~~~~~l~~g~~~-----------e~ 304 (611)
|+|+++++++|+||++||||++. +.+ .|..-.+++|++||+||.+.+++...+.+. .|
T Consensus 3 F~P~~ig~~~lkNRiv~apm~~~~~~~~g~~~~~~~~~yy~~rA~GG~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~ 82 (341)
T PF00724_consen 3 FSPLKIGNLTLKNRIVMAPMTTNMADPDGGVPTDRLIAYYERRAKGGAGLIITEATAVSPEGRGFPGQPGIWDDEQIPGL 82 (341)
T ss_dssp GS-EEETTEEESSSEEE----SSTSCTTTTBCHHHHHHHHHHHHHTTTSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHH
T ss_pred CCCeeECCEEecCCeEECCCCCCCcccCCCCcHHHHHHHHHHHhhcCCceEEecccccccccccccccchhchhhHHHHH
Confidence 89999999999999999999863 212 234444577999999999999987665442 23
Q ss_pred HhH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHH
Q psy9514 305 ALI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382 (611)
Q Consensus 305 ~l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~ 382 (611)
+.+ ..|..+.++++||+|.+........ ....+...+ ....+.+..+......+|+.+++.-+ .+.
T Consensus 83 k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~----~~~~~~psa-~~~~~~~~~~~~~~~~~mt~~eI~~i-------i~~ 150 (341)
T PF00724_consen 83 KKLADAVHAHGAKIIAQLWHAGRQANPEYS----GDPPVGPSA-PSALPSPIKFMGYPPREMTEEEIEEI-------IED 150 (341)
T ss_dssp HHHHHHHHHTTSEEEEEEE--GGGSSGCCS----GGGCEESSC-SSSSSTTTTETSCEEEE--HHHHHHH-------HHH
T ss_pred HHHHHHHHhcCccceeeccccccccCcccC----CCCccCccc-ccccCcccccCCCCCeeCCHHHHHHH-------HHH
Confidence 333 3488888888898887644321110 000000000 00001000000111134444444433 456
Q ss_pred HHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCc
Q psy9514 383 LTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453 (611)
Q Consensus 383 ~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~ 453 (611)
|++||+++.+ +|||+||||++| |..|.+++.||+++.+|.+|+.+||++|+++++..+.|-+|++..+..
T Consensus 151 f~~AA~~A~~-AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~ 229 (341)
T PF00724_consen 151 FAQAARRAKE-AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFV 229 (341)
T ss_dssp HHHHHHHHHH-TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSS
T ss_pred HHHHHHHHHH-hccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeeccc
Confidence 7777777764 799999999998 999999999999999999999999999999998877788888765532
Q ss_pred ------hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccc
Q psy9514 454 ------NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527 (611)
Q Consensus 454 ------~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr 527 (611)
+++.++++.+++.|++++.++........ .+ +..
T Consensus 230 ~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~---------------------------------------~~~ 269 (341)
T PF00724_consen 230 EGGITLEETIEIAKLLEELGVDFLDVSHGSYVHWS-EP---------------------------------------RPS 269 (341)
T ss_dssp TTSHHSHHHHHHHHHHHHHHHTTEEEEEESEEEEE-BT---------------------------------------SST
T ss_pred CCCCchHHHHHHHHHHHHHhhhhcccccccccccc-cc---------------------------------------ccc
Confidence 45677899999999999877543311110 00 000
Q ss_pred cccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCC
Q psy9514 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600 (611)
Q Consensus 528 ~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~d 600 (611)
.........+....+.++...++|||++|+|.+++.++++++.| .+|+|++||++|+||+|++++++|+.++
T Consensus 270 ~~~~~~~~~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g-~~DlV~~gR~~ladPd~~~k~~~g~~de 341 (341)
T PF00724_consen 270 PPFDFEPGYNLDLAEAIKKAVKIPVIGVGGIRTPEQAEKALEEG-KADLVAMGRPLLADPDLPNKAREGREDE 341 (341)
T ss_dssp TTTTTTTTTTHHHHHHHHHHHSSEEEEESSTTHHHHHHHHHHTT-STSEEEESHHHHH-TTHHHHHHHTTGGC
T ss_pred cccccccchhhhhhhhhhhhcCceEEEEeeecchhhhHHHHhcC-CceEeeccHHHHhCchHHHHHHcCCccC
Confidence 00001111222333444555689999999999999999999998 8999999999999999999999999764
No 24
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=99.98 E-value=1.6e-31 Score=283.97 Aligned_cols=289 Identities=16% Similarity=0.127 Sum_probs=197.1
Q ss_pred CCcccccCeeecCcEEeccCCCCC---C------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhhHh
Q psy9514 247 IKNSEKKKIDWQGKLYLSPLTTVG---N------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QEWAL 306 (611)
Q Consensus 247 f~p~ei~~l~l~nrivlAPMt~~g---n------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~~l 306 (611)
|+|+++++++|+||+++|||++.. . +.|..-.++.|+++|+||.+.+++..++.+ ..|+.
T Consensus 2 f~P~~ig~~~l~NRi~~~pm~~~~~~~g~~~~~~~~~y~~rA~gg~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~ 81 (336)
T cd02932 2 FTPLTLRGVTLKNRIVVSPMCQYSAEDGVATDWHLVHYGSRALGGAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKR 81 (336)
T ss_pred CCCeeECCEEEeccCEEcccccCcCCCCCCCHHHHHHHHHHHcCCCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHH
Confidence 789999999999999999997522 1 334444556799999999999886654432 23333
Q ss_pred H--hhccCCCeEEEEecCCChhhHHHHHHHHhh------hccceeeeccCCCCcchhhccCCCccccccccceeeecccC
Q psy9514 307 I--KRHESEDLFGVQLCGNNPYVLTKCTQLLEE------QMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378 (611)
Q Consensus 307 ~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~------~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~ 378 (611)
+ ..|..+..+++||+|.+........-.... ......+.. .+++.........+|+.+++. .
T Consensus 82 l~~~vh~~G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~~~~~p---s~~~~~~~~~~p~~mt~~eI~-------~ 151 (336)
T cd02932 82 IVDFIHSQGAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGWQVVAP---SAIPFDEGWPTPRELTREEIA-------E 151 (336)
T ss_pred HHHHHHhcCCcEEEEccCCCcCCCCCCCccccccccccccCCCceeCC---CCCcCCCCCCCCCcCCHHHHH-------H
Confidence 3 337777888888887664322100000000 000000000 000000001112234333332 3
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~ 447 (611)
-.+.|+++|+++.+ +|||+||||++| |..|.+.+.||++|++|++++.+|+++|++++| .||.||++.
T Consensus 152 ii~~~~~aA~~a~~-aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~ 230 (336)
T cd02932 152 VVDAFVAAARRAVE-AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISA 230 (336)
T ss_pred HHHHHHHHHHHHHH-cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcc
Confidence 44677778887754 699999999998 889999999999999999999999999999994 677777773
Q ss_pred c----ccCCchHHHHHHHHHHHcCCCEEEEEccccc--cccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 448 G----IHKDNNIIHNFMPKFRDWGASLITLHGRTRE--QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 448 g----~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~--qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
. ...+.+++.++++.|++.|+++|+||.+.+. +.+.
T Consensus 231 ~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~-------------------------------------- 272 (336)
T cd02932 231 TDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIP-------------------------------------- 272 (336)
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccC--------------------------------------
Confidence 1 1113467889999999999999999865321 1000
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.....++..++++.+ ..++||+++|+|.|+++++++++.| .+|+||+||++|.||+|++++.+
T Consensus 273 ---------~~~~~~~~~~~~ir~-~~~iPVi~~G~i~t~~~a~~~l~~g-~aD~V~~gR~~i~dP~~~~k~~~ 335 (336)
T cd02932 273 ---------VGPGYQVPFAERIRQ-EAGIPVIAVGLITDPEQAEAILESG-RADLVALGRELLRNPYWPLHAAA 335 (336)
T ss_pred ---------CCccccHHHHHHHHh-hCCCCEEEeCCCCCHHHHHHHHHcC-CCCeehhhHHHHhCccHHHHHhh
Confidence 111123455555544 4589999999999999999999998 89999999999999999999864
No 25
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=99.97 E-value=6.8e-31 Score=281.37 Aligned_cols=300 Identities=13% Similarity=0.117 Sum_probs=201.6
Q ss_pred CCCcccccCeeecCcEEeccCCCC-----CCHHHH----HHHHHcCCCEEEecCcccchhhcCCh-----------hhhH
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTV-----GNLPFR----RLCKKWGADITCSEMAVATELLKSSP-----------QEWA 305 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~-----gnlpfR----rl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~~ 305 (611)
-|+|+++++++||||+++|||++. +..|-. .+.++.|++||+||.+.+++...+.+ ..|.
T Consensus 3 Lf~P~~ig~~~lkNRiv~apm~~~~~~~~~g~~t~~~~~~y~~rAg~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~ 82 (362)
T PRK10605 3 LFSPLKVGAITAPNRVFMAPLTRLRSIEPGDIPTPLMAEYYRQRASAGLIISEATQISAQAKGYAGAPGLHSPEQIAAWK 82 (362)
T ss_pred CCCCeeECCEEeccccEECCcCcCccCCCCCCCCHHHHHHHHHHhCCCEEEECceeeCcccccCCCCCcccCHHHHHHHH
Confidence 389999999999999999999852 223222 22223389999999999987654432 2233
Q ss_pred hH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCc------chhhccCCCccccccccceeeeccc
Q psy9514 306 LI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPI------EFIYKQGSGSGLLQRANLFGVQLCG 377 (611)
Q Consensus 306 l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~------~~~~~~~~~~~l~~~~~~~ivQi~g 377 (611)
.+ ..|..+.++.+||.|.+..........-....+.+.+........ ...+......+|+.+++.-
T Consensus 83 ~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~~eI~~------ 156 (362)
T PRK10605 83 KITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALELEEIPG------ 156 (362)
T ss_pred HHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCHHHHHH------
Confidence 33 348888888889888765432211000000000000000000000 0000011123444434333
Q ss_pred CchHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
-.+.|+.||+++. .+|||+||||++| |..|.+++.||++|.+|.+|+.|||++|+++++..+ |-+|++
T Consensus 157 -ii~~f~~AA~rA~-~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~-igvRis 233 (362)
T PRK10605 157 -IVNDFRQAIANAR-EAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADR-IGIRIS 233 (362)
T ss_pred -HHHHHHHHHHHHH-HcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCe-EEEEEC
Confidence 3456777777775 4799999999998 999999999999999999999999999999997554 677775
Q ss_pred ccC---------CchH-HHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 449 IHK---------DNNI-IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 449 ~~~---------~~~~-a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
..+ +.++ +..+++.|++.|+|+|+|+.....
T Consensus 234 ~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~--------------------------------------- 274 (362)
T PRK10605 234 PLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWA--------------------------------------- 274 (362)
T ss_pred CccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccccc---------------------------------------
Confidence 421 2244 789999999999999999763200
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccC
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~ 598 (611)
........+++.++..+++||+++|++ |++.++++|+.| .+|+|++||++|+||+|++++++|+.
T Consensus 275 -------------~~~~~~~~~~~~ik~~~~~pv~~~G~~-~~~~ae~~i~~G-~~D~V~~gR~~iadPd~~~k~~~g~~ 339 (362)
T PRK10605 275 -------------GGEPYSDAFREKVRARFHGVIIGAGAY-TAEKAETLIGKG-LIDAVAFGRDYIANPDLVARLQRKAE 339 (362)
T ss_pred -------------CCccccHHHHHHHHHHCCCCEEEeCCC-CHHHHHHHHHcC-CCCEEEECHHhhhCccHHHHHhcCCC
Confidence 000011223333454568999999996 899999999998 89999999999999999999999999
Q ss_pred CCcccccccc
Q psy9514 599 FDIYAIVWKW 608 (611)
Q Consensus 599 ~dis~~e~~~ 608 (611)
++-+....-|
T Consensus 340 ~~~~~~~~~~ 349 (362)
T PRK10605 340 LNPQRPESFY 349 (362)
T ss_pred CCCCChhhhc
Confidence 9877655444
No 26
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.97 E-value=3.9e-30 Score=269.19 Aligned_cols=272 Identities=19% Similarity=0.220 Sum_probs=193.1
Q ss_pred ccccCeeecCcEEeccC-CCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 250 SEKKKIDWQGKLYLSPL-TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPM-t~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
.++.+++|+|++++||+ .+.+..++|.++.. |+++++|+.+...+.. |++..+ ++ +++.+..-..-+...+.+.+
T Consensus 3 ~~~~g~~l~npi~~aag~~~~~~~~~~~~~~~-G~g~iv~kt~~~~~~~-gn~~pr-~~-~~~~~~~n~~gl~~~g~~~~ 78 (300)
T TIGR01037 3 VELFGIRFKNPLILASGIMGSGVESLRRIDRS-GAGAVVTKSIGLEPRP-GYRNPT-IV-ETPCGMLNAIGLQNPGVEAF 78 (300)
T ss_pred EEECCEECCCCCEeCCcCCCCCHHHHHHHHHc-CCcEEEeCcccccccc-CCCCCe-EE-ecccHHhhhccCCCcCHHHH
Confidence 46789999999999994 57778889987765 9999999998876542 332110 00 01101000000111112222
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhc-ccceEEeccCCCc
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM-VVDFVDVNLGCPI 407 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~-g~D~IELN~gCP~ 407 (611)
.+.+.... ...+.++++|++|++++++.++|+.+++.. ++|+||||+|||.
T Consensus 79 ---~~~~~~~~-------------------------~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~ 130 (300)
T TIGR01037 79 ---LEELKPVR-------------------------EEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPH 130 (300)
T ss_pred ---HHHHHHHh-------------------------ccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCC
Confidence 12221100 011347899999999999999999997543 5999999999995
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
. .++|+.++++++++.+|++++++.+++||+||++.. .++..++++.++++|+|+|+||+++........
T Consensus 131 ~----~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~----~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~-- 200 (300)
T TIGR01037 131 V----KGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPN----VTDITEIAKAAEEAGADGLTLINTLRGMKIDIK-- 200 (300)
T ss_pred C----CCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCC----hhhHHHHHHHHHHcCCCEEEEEccCCccccccc--
Confidence 3 368999999999999999999999999999999843 346789999999999999999987643210000
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH----HHHHHHHhhCCCCcEEEecCCCCHHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW----DYIEKCAQLCSPAPLYGNGDILSYED 563 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~----~~i~~~~k~~~~iPVIgnGgI~s~ed 563 (611)
...+ .+ .+..+.+++++.| ++++++.+. .++|||+||||.|++|
T Consensus 201 -------------------~~~~----------~~--~~~~gg~sg~~~~~~~l~~v~~i~~~-~~ipvi~~GGI~s~~d 248 (300)
T TIGR01037 201 -------------------TGKP----------IL--ANKTGGLSGPAIKPIALRMVYDVYKM-VDIPIIGVGGITSFED 248 (300)
T ss_pred -------------------cCce----------ee--CCCCccccchhhhHHHHHHHHHHHhc-CCCCEEEECCCCCHHH
Confidence 0000 00 1122335665544 777777664 5899999999999999
Q ss_pred HHHHHHcCCCccEEEEcHHhhhCCchHHHHHccc
Q psy9514 564 YTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 564 a~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~ 597 (611)
+.+++..| ||+|||||++|.+||+|.+++++-
T Consensus 249 a~~~l~~G--Ad~V~igr~~l~~p~~~~~i~~~l 280 (300)
T TIGR01037 249 ALEFLMAG--ASAVQVGTAVYYRGFAFKKIIEGL 280 (300)
T ss_pred HHHHHHcC--CCceeecHHHhcCchHHHHHHHHH
Confidence 99999976 999999999999999999998763
No 27
>PLN02411 12-oxophytodienoate reductase
Probab=99.97 E-value=8.8e-30 Score=275.27 Aligned_cols=303 Identities=11% Similarity=0.031 Sum_probs=199.7
Q ss_pred CCCcccccCeeecCcEEeccCCCCCC---------HHHHHHHHHcCCCEEEecCcccchhhcCCh-----------hhhH
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTVGN---------LPFRRLCKKWGADITCSEMAVATELLKSSP-----------QEWA 305 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~gn---------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~-----------~e~~ 305 (611)
=|+|+++++++|+||++||||++... +.|..-.++.| +||+||.+.+++..++.. ..|+
T Consensus 12 Lf~P~~ig~~~lkNRiv~aPm~~~~~~dG~~t~~~~~yy~~rA~gG-GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~ 90 (391)
T PLN02411 12 LFSPYKMGRFDLSHRVVLAPMTRCRALNGIPNAALAEYYAQRSTPG-GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWK 90 (391)
T ss_pred cCCCeeECCEEEcccCEECCcCcCcCCCCCCCHHHHHHHHHHHcCC-CEEEeCceEECcccCcCCCCCccCCHHHHHHHH
Confidence 59999999999999999999986321 22333334456 999999999987655433 2344
Q ss_pred hH--hhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCC----CCcchhhccCCCccccccccceeeecccCc
Q psy9514 306 LI--KRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG----CPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379 (611)
Q Consensus 306 l~--~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~g----cp~~~~~~~~~~~~l~~~~~~~ivQi~g~~ 379 (611)
.+ ..|..+.++++||.|.+..........-......+.+.+... .|...........+|+.+++.-+
T Consensus 91 ~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~i------- 163 (391)
T PLN02411 91 KVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSEIPEV------- 163 (391)
T ss_pred HHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHHHHHH-------
Confidence 33 348888899999988775432110000000000000000000 00000000012234554444444
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
.+.|++||+++. .+|||+||||++| |..|.|++.|||+|.+|.+|+.+||++|+++++..+ |-+|++..
T Consensus 164 i~~f~~AA~rA~-~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~-vgvRiS~~ 241 (391)
T PLN02411 164 VEHYRQAALNAI-RAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADR-VGVRVSPA 241 (391)
T ss_pred HHHHHHHHHHHH-HcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCe-EEEEEccc
Confidence 456777777775 3799999999998 999999999999999999999999999999998654 77777632
Q ss_pred C---------CchHHHHHHHHHHHc------CCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhc
Q psy9514 451 K---------DNNIIHNFMPKFRDW------GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDW 515 (611)
Q Consensus 451 ~---------~~~~a~~la~~l~~a------Gvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~ 515 (611)
+ ..+....+++.|+.. |+|+|+|+....... ... .+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~-~~~-~~--------------------------- 292 (391)
T PLN02411 242 IDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAY-GQT-ES--------------------------- 292 (391)
T ss_pred ccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCccccc-CCC-cc---------------------------
Confidence 1 123467778877753 599999987542100 000 00
Q ss_pred CCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 516 G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
..+.....+.++++.+++.+++|||++|+| ++++++++++.| .+|+|.+||++|+||+|++++++
T Consensus 293 -------------~~~~~~~~~~~~a~~ik~~v~~pvi~~G~i-~~~~a~~~l~~g-~aDlV~~gR~~iadPdl~~k~~~ 357 (391)
T PLN02411 293 -------------GRHGSEEEEAQLMRTLRRAYQGTFMCSGGF-TRELGMQAVQQG-DADLVSYGRLFISNPDLVLRFKL 357 (391)
T ss_pred -------------cccCCccchhHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHcC-CCCEEEECHHHHhCccHHHHHhc
Confidence 001111123334444555678999999999 679999999998 89999999999999999999999
Q ss_pred ccCCCcc
Q psy9514 596 KKLFDIY 602 (611)
Q Consensus 596 g~~~dis 602 (611)
|+.+.-.
T Consensus 358 g~~l~~~ 364 (391)
T PLN02411 358 NAPLNKY 364 (391)
T ss_pred CCCCCCC
Confidence 9988643
No 28
>KOG2334|consensus
Probab=99.97 E-value=3.2e-30 Score=269.36 Aligned_cols=248 Identities=28% Similarity=0.462 Sum_probs=200.5
Q ss_pred ccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHH
Q psy9514 252 KKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKC 331 (611)
Q Consensus 252 i~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~ 331 (611)
+..+.++|+++||||++.|++|.|.|+-+|||+++|||-+....|+++...+ .+.
T Consensus 4 ~~~l~y~nk~iLApMvr~G~lpmrLLal~~Gadlv~~peIVdkKLIe~ir~~--------Nea----------------- 58 (477)
T KOG2334|consen 4 ISSLFYRNKLILAPMVRAGELPMRLLALQYGADLVYTPEIVDKKLIECIRVE--------NEA----------------- 58 (477)
T ss_pred hhhhhhcCcEeeehHHHhccchHHHHHHHhccceecChhhhhHHHHhccccc--------ccc-----------------
Confidence 4568889999999999999999999999999999999999998888775421 110
Q ss_pred HHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCcccee
Q psy9514 332 TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411 (611)
Q Consensus 332 a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~ 411 (611)
-+.+||++...+- ..|..- -.+...++.|++.++++.+.++|..+.. ..-|||+|+|||..|..
T Consensus 59 ------lgtIDfv~p~~~~---vvfr~~-----~~e~~rlilQ~gT~sa~lA~e~A~lv~n--DvsgidiN~gCpK~fSi 122 (477)
T KOG2334|consen 59 ------LGTIDFVDPSDST---VVFRTC-----PAENSRLILQIGTASAELALEAAKLVDN--DVSGIDINMGCPKEFSI 122 (477)
T ss_pred ------ccceeeecCCcce---EEEEec-----hhhcCeEEEEecCCcHHHHHHHHHHhhc--ccccccccCCCCCcccc
Confidence 1234555432210 101000 0123478999999999999999999854 68899999999999999
Q ss_pred ccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHH
Q psy9514 412 KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491 (611)
Q Consensus 412 ~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i 491 (611)
..|.|++|+.+|+.+..|+..+.+...+|+++|||+- ++.+.++++++++...|+.+|+||+|++..|..+++
T Consensus 123 ~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L--~s~edtL~lv~ri~~tgi~ai~vh~rt~d~r~~~~~----- 195 (477)
T KOG2334|consen 123 HGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLL--DSKEDTLKLVKRICATGIAAITVHCRTRDERNQEPA----- 195 (477)
T ss_pred ccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEec--CCcccHHHHHHHHHhcCCceEEEEeeccccCCCCCC-----
Confidence 9999999999999999999999999999999999953 556788999999999999999999999888844444
Q ss_pred HHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCC---HHHHHHHH
Q psy9514 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS---YEDYTESL 568 (611)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s---~eda~~~l 568 (611)
.-++|++++.....||||.||++.+ +.|.+...
T Consensus 196 --------------------------------------------~~~~i~~i~~~~~~V~vi~ng~~~~~e~y~Di~~~~ 231 (477)
T KOG2334|consen 196 --------------------------------------------TKDYIREIAQACQMVPVIVNGGSMDIEQYSDIEDFQ 231 (477)
T ss_pred --------------------------------------------CHHHHHHHHHHhccceEeeccchhhHHhhhhHHHHH
Confidence 4455555555554599999999999 66666766
Q ss_pred HcCCCccEEEEcHHhhhCCchHHH
Q psy9514 569 KKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 569 ~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
+.. ++|+|||+|++.++|.+|.+
T Consensus 232 ~~~-~~~~vmiAR~A~~n~SiF~~ 254 (477)
T KOG2334|consen 232 EKT-GADSVMIARAAESNPSIFRE 254 (477)
T ss_pred HHh-ccchhhhhHhhhcCCceeee
Confidence 666 69999999999999999965
No 29
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.97 E-value=7.1e-30 Score=297.82 Aligned_cols=292 Identities=13% Similarity=0.130 Sum_probs=196.3
Q ss_pred CCCcccccCeeecCcEEeccCCCCCC---------HHHHHHHHHcCCCEEEecCcccchhhcCChh-----------hhH
Q psy9514 246 KIKNSEKKKIDWQGKLYLSPLTTVGN---------LPFRRLCKKWGADITCSEMAVATELLKSSPQ-----------EWA 305 (611)
Q Consensus 246 ~f~p~ei~~l~l~nrivlAPMt~~gn---------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~-----------e~~ 305 (611)
=|+|+++++++|+||++|+||++... +.|..-.++.|++||+||.+.+++...+.+. .|+
T Consensus 399 Lf~P~~i~~~~l~NRi~~~pm~~~~~~~g~~t~~~~~~y~~rA~gG~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~ 478 (765)
T PRK08255 399 MFTPFRLRGLTLKNRVVVSPMAMYSAVDGVPGDFHLVHLGARALGGAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWK 478 (765)
T ss_pred ccCccccCCEeeCCCccccCcccccCCCCCCCHHHHHHHHHHHcCCCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHH
Confidence 59999999999999999999976432 2243334567999999999999877654332 333
Q ss_pred hH--hhccC-CCeEEEEecCCChhhHHHHHHH----HhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccC
Q psy9514 306 LI--KRHES-EDLFGVQLCGNNPYVLTKCTQL----LEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN 378 (611)
Q Consensus 306 l~--~~h~~-e~~~~vQi~g~~p~~~~~~a~~----l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~ 378 (611)
.+ ..|.. +.++++||.|.+........-. ....++...+ ...+++.........+|+.+++.-
T Consensus 479 ~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~---~pS~~~~~~~~~~p~~mt~~eI~~------- 548 (765)
T PRK08255 479 RIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLI---SASPLPYLPGSQVPREMTRADMDR------- 548 (765)
T ss_pred HHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCcee---CCCCCcCCCCCCCCCcCCHHHHHH-------
Confidence 33 33777 5788999988765432110000 0000000000 000111000011123444433333
Q ss_pred chHHHHHHHHHHHHhcccceEEeccC---------CCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLG---------CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~g---------CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~ 447 (611)
-.+.|++||+++. .+|||+||||++ ||..|.+++.||++|++|.+++.+|+++|+++++ .||.+||+.
T Consensus 549 ~i~~f~~aA~~a~-~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~ 627 (765)
T PRK08255 549 VRDDFVAAARRAA-EAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISA 627 (765)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEcc
Confidence 3456777777775 469999999999 8999999999999999999999999999999985 688888885
Q ss_pred c-ccC---CchHHHHHHHHHHHcCCCEEEEEccc-cccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEe
Q psy9514 448 G-IHK---DNNIIHNFMPKFRDWGASLITLHGRT-REQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 448 g-~~~---~~~~a~~la~~l~~aGvd~ItvhgR~-r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~iti 522 (611)
. +.+ +.+++..+++.|++.|+|+|+||++. ..+.+ + .
T Consensus 628 ~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~--~-~----------------------------------- 669 (765)
T PRK08255 628 HDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEK--P-V----------------------------------- 669 (765)
T ss_pred ccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCC--C-C-----------------------------------
Confidence 2 222 23578899999999999999999543 11100 0 0
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
+.......+..+ +++.+++|||+||+|+++++++++++.| ++|+||+||++|.||+|+.+....
T Consensus 670 --------~~~~~~~~~~~~-ik~~~~~pv~~~G~i~~~~~a~~~l~~g-~~D~v~~gR~~l~dP~~~~~~~~~ 733 (765)
T PRK08255 670 --------YGRMYQTPFADR-IRNEAGIATIAVGAISEADHVNSIIAAG-RADLCALARPHLADPAWTLHEAAE 733 (765)
T ss_pred --------cCccccHHHHHH-HHHHcCCEEEEeCCCCCHHHHHHHHHcC-CcceeeEcHHHHhCccHHHHHHHH
Confidence 001111123333 3445689999999999999999999998 899999999999999655444443
No 30
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.96 E-value=1.1e-27 Score=250.20 Aligned_cols=270 Identities=16% Similarity=0.182 Sum_probs=190.2
Q ss_pred ccccCeeecCcEEecc-CCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEE--ecCCChh
Q psy9514 250 SEKKKIDWQGKLYLSP-LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ--LCGNNPY 326 (611)
Q Consensus 250 ~ei~~l~l~nrivlAP-Mt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQ--i~g~~p~ 326 (611)
.++.+++|+|++++|. +.+ +...+|+++..+|++.++++++..++.. +.+.. .+++ .. .-+.-+ +...+++
T Consensus 2 ~~~~G~~~~nP~~~aag~~~-~~~~~~~~~~~g~~g~v~~~ti~~~~~~-~~~~p-~~~~-~~--~~~~n~~g~~~~g~~ 75 (296)
T cd04740 2 VELAGLRLKNPVILASGTFG-FGEELSRVADLGKLGAIVTKSITLEPRE-GNPPP-RVVE-TP--GGMLNAIGLQNPGVE 75 (296)
T ss_pred eEECCEEcCCCCEECCCCCC-CHHHHHHHHhcCCceEEEECCcCCCCCC-CCCCC-eEEe-cC--cceeeecCCCCcCHH
Confidence 4577999999999984 223 6678999998877999999999987643 32211 0000 00 001000 0011111
Q ss_pred hHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCC
Q psy9514 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406 (611)
Q Consensus 327 ~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP 406 (611)
.+.+ .+.+ .....+.++++|++|++++++.++|+++.+ +|+|+||||++||
T Consensus 76 ~~~~---~~~~-------------------------~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~-~G~d~iElN~~cP 126 (296)
T cd04740 76 AFLE---ELLP-------------------------WLREFGTPVIASIAGSTVEEFVEVAEKLAD-AGADAIELNISCP 126 (296)
T ss_pred HHHH---HHHH-------------------------HhhcCCCcEEEEEecCCHHHHHHHHHHHHH-cCCCEEEEECCCC
Confidence 1111 1100 001124689999999999999999999975 5999999999999
Q ss_pred ccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCc
Q psy9514 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486 (611)
Q Consensus 407 ~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~a 486 (611)
. .+. .|..++++++++.+|++++++.+++||+||++... ++..++++.++++|+|+|++++++.....
T Consensus 127 ~---~~~-~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~----~~~~~~a~~~~~~G~d~i~~~nt~~g~~~---- 194 (296)
T cd04740 127 N---VKG-GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV----TDIVEIARAAEEAGADGLTLINTLKGMAI---- 194 (296)
T ss_pred C---CCC-CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc----hhHHHHHHHHHHcCCCEEEEECCCccccc----
Confidence 4 433 38889999999999999999999999999987532 35778999999999999999988643110
Q ss_pred ChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCCCCcEEEecCCCCHH
Q psy9514 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCSPAPLYGNGDILSYE 562 (611)
Q Consensus 487 dw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~~iPVIgnGgI~s~e 562 (611)
++. ...+.+ + ...+.+++++ .+.+++++.+. .++|||++|||.|++
T Consensus 195 ~~~-----------------~~~~~~-----------~-~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~ 244 (296)
T cd04740 195 DIE-----------------TRKPIL-----------G-NVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGE 244 (296)
T ss_pred ccc-----------------cCceee-----------c-CCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHH
Confidence 000 000000 0 0112244433 56888887665 489999999999999
Q ss_pred HHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccC
Q psy9514 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKL 598 (611)
Q Consensus 563 da~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~ 598 (611)
|+.++++.| ||+|||||+++.+||+|++|+++..
T Consensus 245 da~~~l~~G--Ad~V~igra~l~~p~~~~~i~~~l~ 278 (296)
T cd04740 245 DALEFLMAG--ASAVQVGTANFVDPEAFKEIIEGLE 278 (296)
T ss_pred HHHHHHHcC--CCEEEEchhhhcChHHHHHHHHHHH
Confidence 999999987 9999999999999999999988753
No 31
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=99.96 E-value=4.2e-28 Score=243.61 Aligned_cols=161 Identities=22% Similarity=0.173 Sum_probs=141.5
Q ss_pred cccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE
Q psy9514 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446 (611)
Q Consensus 367 ~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR 446 (611)
...++++|+.+++++.+.++++.+.+ ++|+||||||||+..+.+.|+|++|+.+|+++.+++++++. .++||+||||
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~-~~~PVsvKiR 142 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE--HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE-LNKPIFVKIR 142 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc-CCCcEEEEeC
Confidence 45689999999999999999999965 89999999999999999999999999999999999999994 5899999999
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
+++.+ ..+.+++++++++|+++|+||.+...
T Consensus 143 ~~~~~--~~~~~~a~~l~~aGad~i~Vd~~~~g----------------------------------------------- 173 (231)
T TIGR00736 143 GNCIP--LDELIDALNLVDDGFDGIHVDAMYPG----------------------------------------------- 173 (231)
T ss_pred CCCCc--chHHHHHHHHHHcCCCEEEEeeCCCC-----------------------------------------------
Confidence 98643 45779999999999999999864311
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
.+.++|++|+++.+...++||||||||.|++|+.++++.| ||+||||||+|.+
T Consensus 174 -----~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~G--Ad~VmvgR~~l~~ 226 (231)
T TIGR00736 174 -----KPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAG--ADFVSVARAILKG 226 (231)
T ss_pred -----CchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhC--CCeEEEcHhhccC
Confidence 1226788888887765459999999999999999999976 9999999999965
No 32
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=99.96 E-value=2.5e-27 Score=248.06 Aligned_cols=281 Identities=16% Similarity=0.160 Sum_probs=199.8
Q ss_pred cccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCC--CeEEEEecC----
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESE--DLFGVQLCG---- 322 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e--~~~~vQi~g---- 322 (611)
+.+..+++|+|++++|.=+-..+...-+.+...|++.+++..+..+.-..+++. ..++. .+.+ ...+.+-.+
T Consensus 3 ~~~~~Gl~l~nPi~~aag~~~~~~~~~~~~~~~G~Gavv~kti~~~~~~~gn~~-pr~~~-~~~~~~n~~g~~n~e~~s~ 80 (299)
T cd02940 3 SVTFCGIKFPNPFGLASAPPTTSYPMIRRAFEAGWGGAVTKTLGLDKDIVTNVS-PRIAR-LRTSGRGQIGFNNIELISE 80 (299)
T ss_pred ceEECCEEcCCCCEeCCcCCCCCHHHHHHHHHhCCCEEEeccccCcCCCCCCCC-CeEEE-eCCCchhcccccCCccccc
Confidence 356789999999999963322344433333455999999998887621223221 00110 0000 001111000
Q ss_pred CChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccc--cccceeeecccC-chHHHHHHHHHHHHhcccceE
Q psy9514 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ--RANLFGVQLCGN-NPYVLTKCTQLLEEQMVVDFV 399 (611)
Q Consensus 323 ~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~--~~~~~ivQi~g~-~p~~~~~aA~~l~~~~g~D~I 399 (611)
.+.+.+.+. . ..+.. .+.++++|++|. +++++.++|+.+++ .|+|+|
T Consensus 81 ~~~~~~~~~----------------------------~-~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~-~gad~i 130 (299)
T cd02940 81 KPLEYWLKE----------------------------I-RELKKDFPDKILIASIMCEYNKEDWTELAKLVEE-AGADAL 130 (299)
T ss_pred cCHHHHHHH----------------------------H-HHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh-cCCCEE
Confidence 000000000 0 01111 146899999998 99999999999964 689999
Q ss_pred EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccc
Q psy9514 400 DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479 (611)
Q Consensus 400 ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~ 479 (611)
|||+|||.. ...+++|+.|+++|+.+.+|+++|++.+++||+||+|... +...+++++++++|+++|+++++...
T Consensus 131 elN~sCP~~-~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~ 205 (299)
T cd02940 131 ELNFSCPHG-MPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNI----TDIREIARAAKEGGADGVSAINTVNS 205 (299)
T ss_pred EEECCCCCC-CCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCc----hhHHHHHHHHHHcCCCEEEEeccccc
Confidence 999999975 4567789999999999999999999999999999998533 45779999999999999999998854
Q ss_pred cccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCcc----HHHHHHHHhhCC-CCcEEE
Q psy9514 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD----WDYIEKCAQLCS-PAPLYG 554 (611)
Q Consensus 480 qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~----~~~i~~~~k~~~-~iPVIg 554 (611)
...- |. +.....+.+|+||..++|++++. |++++++.+... ++||||
T Consensus 206 ~~~i---d~-------------------------~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig 257 (299)
T cd02940 206 LMGV---DL-------------------------DGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISG 257 (299)
T ss_pred cccc---cc-------------------------ccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEE
Confidence 2100 00 00001124789999999999887 899999877652 799999
Q ss_pred ecCCCCHHHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHcc
Q psy9514 555 NGDILSYEDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEK 596 (611)
Q Consensus 555 nGgI~s~eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g 596 (611)
||||.|++|+.+++..| ||+||||||++. .|.++.+|.++
T Consensus 258 ~GGI~~~~da~~~l~aG--A~~V~i~ta~~~~g~~~~~~i~~~ 298 (299)
T cd02940 258 IGGIESWEDAAEFLLLG--ASVVQVCTAVMNQGFTIVDDMCTG 298 (299)
T ss_pred ECCCCCHHHHHHHHHcC--CChheEceeecccCCcHHHHHhhh
Confidence 99999999999999987 999999999998 99999999765
No 33
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.95 E-value=2.1e-26 Score=241.26 Aligned_cols=275 Identities=16% Similarity=0.203 Sum_probs=187.6
Q ss_pred cccccCeeecCcEEecc-CCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeE-EEEecCCChh
Q psy9514 249 NSEKKKIDWQGKLYLSP-LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLF-GVQLCGNNPY 326 (611)
Q Consensus 249 p~ei~~l~l~nrivlAP-Mt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~-~vQi~g~~p~ 326 (611)
+.++.+++|+|++++|. +.+ .+..+-+.+...|++.+++..+..++. .|.+.. .+++ .+ ...+ ...+...+++
T Consensus 3 ~~~~~G~~~~nPv~~aag~~~-~~~~~~~~~~~~g~g~v~~kti~~~~~-~g~~~p-r~~~-~~-~~~~n~~g~~~~g~~ 77 (301)
T PRK07259 3 SVELPGLKLKNPVMPASGTFG-FGGEYARFYDLNGLGAIVTKSTTLEPR-EGNPTP-RIAE-TP-GGMLNAIGLQNPGVD 77 (301)
T ss_pred ceEECCEECCCCcEECCcCCC-CCHHHHHHhhhcCCcEEEeCCCCCCCC-CCCCCC-cEEe-cC-CceeecCCCCCcCHH
Confidence 35678999999999985 232 344666667788999999998886643 222210 0000 00 0000 0001111111
Q ss_pred hHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcc-cceEEeccCC
Q psy9514 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGC 405 (611)
Q Consensus 327 ~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g-~D~IELN~gC 405 (611)
.+.+ .+. ..+...+.++++|++|+++++|.++|+++++ +| +|+||||++|
T Consensus 78 ~~~~---~~~-------------------------~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~-aG~~D~iElN~~c 128 (301)
T PRK07259 78 AFIE---EEL-------------------------PWLEEFDTPIIANVAGSTEEEYAEVAEKLSK-APNVDAIELNISC 128 (301)
T ss_pred HHHH---HHH-------------------------HHHhccCCcEEEEeccCCHHHHHHHHHHHhc-cCCcCEEEEECCC
Confidence 1111 000 0011125689999999999999999999964 67 9999999999
Q ss_pred CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccC
Q psy9514 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485 (611)
Q Consensus 406 P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ 485 (611)
|. ...| |..+.++++++.+++++|++.+++||.||++.. .++..++++.++++|+|+|++++++........
T Consensus 129 P~---~~~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~ 200 (301)
T PRK07259 129 PN---VKHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN----VTDIVEIAKAAEEAGADGLSLINTLKGMAIDIK 200 (301)
T ss_pred CC---CCCC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC----chhHHHHHHHHHHcCCCEEEEEccccccccccc
Confidence 94 3333 778899999999999999999999999999853 246788999999999999999987643210000
Q ss_pred cChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHH
Q psy9514 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYT 565 (611)
Q Consensus 486 adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~ 565 (611)
...+.+. +..|. -.+....+..+++++++.+. .++|||++|||.|++|+.
T Consensus 201 ---------------------~~~~~~~-------~~~gg-~sg~~~~p~~l~~v~~i~~~-~~ipvi~~GGI~~~~da~ 250 (301)
T PRK07259 201 ---------------------TRKPILA-------NVTGG-LSGPAIKPIALRMVYQVYQA-VDIPIIGMGGISSAEDAI 250 (301)
T ss_pred ---------------------cCceeec-------CCcCc-cCCcCcccccHHHHHHHHHh-CCCCEEEECCCCCHHHHH
Confidence 0000000 00000 01112233468888888765 489999999999999999
Q ss_pred HHHHcCCCccEEEEcHHhhhCCchHHHHHccc
Q psy9514 566 ESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 566 ~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~ 597 (611)
+++..| +|+|||||+++.+|++|++++++.
T Consensus 251 ~~l~aG--Ad~V~igr~ll~~P~~~~~i~~~l 280 (301)
T PRK07259 251 EFIMAG--ASAVQVGTANFYDPYAFPKIIEGL 280 (301)
T ss_pred HHHHcC--CCceeEcHHHhcCcHHHHHHHHHH
Confidence 999987 999999999999999999999876
No 34
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=99.94 E-value=4.5e-25 Score=229.56 Aligned_cols=279 Identities=14% Similarity=0.138 Sum_probs=188.8
Q ss_pred cccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHH
Q psy9514 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330 (611)
Q Consensus 251 ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~ 330 (611)
+..+++|+|++++|.-....+..+-+.....|++.+++..+...+.. +++. .+.+.+.-.++ ....
T Consensus 2 ~~~G~~~~nPv~~aag~~~~~~~~~~~~~~~g~g~vv~kti~~~~~~-~n~~----------pr~~~~~~~~~---~~~~ 67 (289)
T cd02810 2 NFLGLKLKNPFGVAAGPLLKTGELIARAAAAGFGAVVYKTVTLHPRP-GNPL----------PRVARLPPEGE---SYPE 67 (289)
T ss_pred eECCEECCCCCEeCCCCCCCCHHHHHHHHHcCCCeEEeCcccCCCCC-CCCC----------CCEEEeccccc---cCcc
Confidence 35689999999999766656777777777889999999988876432 2221 01110000000 0000
Q ss_pred HHHHHhhhccceeeeccCCCCcc--hhhccCCCccccc-cccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCc
Q psy9514 331 CTQLLEEQMAVDFVDVNLGCPIE--FIYKQGSGSGLLQ-RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407 (611)
Q Consensus 331 ~a~~l~~~~~v~~idln~gcp~~--~~~~~~~~~~l~~-~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~ 407 (611)
. ..+++ ..|.+.. ..|.......... .+.++++|++|++++++.++++.+.+ .|+|+||||++||.
T Consensus 68 ~---------~~~~n-~~g~~~~g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~-~G~d~ielN~~cP~ 136 (289)
T cd02810 68 Q---------LGILN-SFGLPNLGLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIER-AGAKALELNLSCPN 136 (289)
T ss_pred c---------ceEee-cCCCCCcCHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHH-hCCCEEEEEcCCCC
Confidence 0 00000 0111110 0000000000111 35789999999999999999999975 49999999999994
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
.. .+..++++++++.++++++++.+++||+||++.+.+ .++..++++.++++|+|+|++|+++........
T Consensus 137 ~~-----~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~--~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~-- 207 (289)
T cd02810 137 VG-----GGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFD--LEDIVELAKAAERAGADGLTAINTISGRVVDLK-- 207 (289)
T ss_pred CC-----CCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEEcccCccceecc--
Confidence 32 245588999999999999999999999999997653 356889999999999999999998743220000
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccC----CccHHHHHHHHhhCC-CCcEEEecCCCCHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK----QADWDYIEKCAQLCS-PAPLYGNGDILSYE 562 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~----~a~~~~i~~~~k~~~-~iPVIgnGgI~s~e 562 (611)
...+ ...+..+.+.+ +..+++++++.+... ++|||++|||.|++
T Consensus 208 -------------------~~~~------------~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~~~ 256 (289)
T cd02810 208 -------------------TVGP------------GPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDSGE 256 (289)
T ss_pred -------------------cCcc------------ccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCCHH
Confidence 0000 00001111222 235788888877654 79999999999999
Q ss_pred HHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 563 DYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 563 da~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
|+.+++..| ||+|||||+++.| ||+|++|+++
T Consensus 257 da~~~l~~G--Ad~V~vg~a~~~~GP~~~~~i~~~ 289 (289)
T cd02810 257 DVLEMLMAG--ASAVQVATALMWDGPDVIRKIKKE 289 (289)
T ss_pred HHHHHHHcC--ccHheEcHHHHhcCccHHHHHhcC
Confidence 999999987 9999999999999 9999999763
No 35
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=99.94 E-value=1.9e-25 Score=244.29 Aligned_cols=193 Identities=20% Similarity=0.248 Sum_probs=160.5
Q ss_pred ccceeeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE
Q psy9514 368 ANLFGVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446 (611)
Q Consensus 368 ~~~~ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR 446 (611)
+.++++||+|. +++.+.++|+.+++ .|+|+||||+|||.. +..+++|+.|+++++.+.+|+++|++.+.+||+||+|
T Consensus 99 ~~p~i~si~g~~~~~~~~~~a~~~~~-~g~d~ielN~scP~~-~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~ 176 (420)
T PRK08318 99 DRALIASIMVECNEEEWKEIAPLVEE-TGADGIELNFGCPHG-MSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLT 176 (420)
T ss_pred CceEEEEeccCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCCC-ccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcC
Confidence 35789999999 99999999999964 689999999999962 4446789999999999999999999999999999998
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
... +....++++++++|+++|++.+++..... -|.+ ..-....+|+++
T Consensus 177 p~~----~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~---id~~-------------------------~~~~~p~~~~~~ 224 (420)
T PRK08318 177 PNI----TDIREPARAAKRGGADAVSLINTINSITG---VDLD-------------------------RMIPMPIVNGKS 224 (420)
T ss_pred CCc----ccHHHHHHHHHHCCCCEEEEecccCcccc---cccc-------------------------ccCCCceecCCC
Confidence 532 34678999999999999999998754210 0000 000113468999
Q ss_pred ccccccCCc----cHHHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHcc
Q psy9514 527 REQRYTKQA----DWDYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEK 596 (611)
Q Consensus 527 r~g~~~~~a----~~~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g 596 (611)
..|+|++++ .|++|+++.+.. .++||||||||.|++|+.+++..| ||+||||||++. .|+++.+|..+
T Consensus 225 ~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aG--A~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 225 SHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLG--AGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred CcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhC--CChheeeeeeccCCchhHHHHHHH
Confidence 999999988 599999988764 279999999999999999999987 999999999999 89999998876
No 36
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.93 E-value=3.9e-24 Score=223.48 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=180.6
Q ss_pred cccCeeecCcEEeccCCCCCCHH-HHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHH
Q psy9514 251 EKKKIDWQGKLYLSPLTTVGNLP-FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLT 329 (611)
Q Consensus 251 ei~~l~l~nrivlAPMt~~gnlp-fRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~ 329 (611)
+..+|+|+|++++|.=+...+.. .+++. ..|++.+++..+.-.+.. |.+.. .++. .... .+.-.|-....+.
T Consensus 2 ~~~Gl~l~nPi~~Asg~~~~~~e~~~~~~-~~G~Gavv~ktit~~~~~-gn~~p-r~~~-~~~~---~~N~~G~~n~g~~ 74 (294)
T cd04741 2 TPPGLTISPPLMNAAGPWCTTLEDLLELA-ASSTGAVTTRSSTLAGRP-GNPEP-RYYA-FPLG---SINSLGLPNLGLD 74 (294)
T ss_pred ccCCeeCCCCCEECCCCCCCCHHHHHHHH-HcCCcEEEeCcccCCCCC-CCCCC-cEEe-cCcc---ccccccCCCcCHH
Confidence 35689999999999654334543 44444 579999999988866542 22210 0000 0000 0011111111111
Q ss_pred HHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhc--ccceEEeccCCCc
Q psy9514 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQM--VVDFVDVNLGCPI 407 (611)
Q Consensus 330 ~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~--g~D~IELN~gCP~ 407 (611)
...+.+.+.. ..+-..+.++++||+|+ ++++.++++.+.+.. ++|+||||+|||.
T Consensus 75 ~~~~~i~~~~----------------------~~~~~~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn 131 (294)
T cd04741 75 YYLEYIRTIS----------------------DGLPGSAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPN 131 (294)
T ss_pred HHHHHHHHHh----------------------hhccccCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCC
Confidence 1111111100 00001246899999999 999999999987655 7999999999994
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHc--CCCEEEEEccccccccccC
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW--GASLITLHGRTREQRYTKQ 485 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~a--Gvd~ItvhgR~r~qr~~~~ 485 (611)
. .+ +..+..+++.+.+|+++|++.+.+||+||+|.+++ .....++++.+.+. |+++|++++++.....-
T Consensus 132 ---~-~~-~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~~--~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~i-- 202 (294)
T cd04741 132 ---V-PG-KPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYTD--PAQFDTLAEALNAFACPISFITATNTLGNGLVL-- 202 (294)
T ss_pred ---C-CC-cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC--HHHHHHHHHHHhccccCCcEEEEEccCCccccc--
Confidence 3 22 33577899999999999999999999999998763 34567888888888 99999999887321100
Q ss_pred cChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-CCcEEEecCCCC
Q psy9514 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-PAPLYGNGDILS 560 (611)
Q Consensus 486 adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~iPVIgnGgI~s 560 (611)
|. +...+ .+.+....+.+++++ .+.+++++.+... ++||||||||.|
T Consensus 203 -d~-----------------~~~~~----------~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s 254 (294)
T cd04741 203 -DP-----------------ERETV----------VLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLD 254 (294)
T ss_pred -cC-----------------CCCCc----------ccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCC
Confidence 00 00000 000011122344322 4566777766653 599999999999
Q ss_pred HHHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHcc
Q psy9514 561 YEDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEK 596 (611)
Q Consensus 561 ~eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g 596 (611)
++|+.+++..| ||+|||||+++. +||+|.+|.++
T Consensus 255 ~~da~e~l~aG--A~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 255 GRGAFRMRLAG--ASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHHHHHHHHcC--CCceeEchhhhhcCchHHHHHHHH
Confidence 99999999987 999999999995 99999999765
No 37
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.90 E-value=9.1e-23 Score=217.60 Aligned_cols=268 Identities=17% Similarity=0.177 Sum_probs=180.9
Q ss_pred cccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
+.++.+++|+|++++|.=++ ++...-+.+...|++.+++..+...+.. |.+..+ +....+.... +.-.|-.-...
T Consensus 50 ~~~~~Gl~l~nPi~~AsG~~-~~~~~~~~~~~~G~Gavv~ktvt~~p~~-gn~~pr-~~~~~~~~~~--~N~~gl~n~g~ 124 (344)
T PRK05286 50 PVTVMGLTFPNPVGLAAGFD-KNGEAIDALGALGFGFVEVGTVTPRPQP-GNPKPR-LFRLPEDEAL--INRMGFNNDGA 124 (344)
T ss_pred ceEECCEECCCCCEECCCCC-CChHHHHHHHHcCCCEEEeCCcCCCCCC-CCCCCC-EEeccccccc--ccCCCCCCHhH
Confidence 56888999999999975322 3443333366889999999988765432 221100 0000000000 00001000001
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccC-------chHHHHHHHHHHHHhcccceEEe
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN-------NPYVLTKCTQLLEEQMVVDFVDV 401 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~-------~p~~~~~aA~~l~~~~g~D~IEL 401 (611)
....+.+.+ . . .+.+++++|.++ +.+++++.++.+.+ ++|+|||
T Consensus 125 ~~~~~~l~~-------------------------~-~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~ad~lel 175 (344)
T PRK05286 125 DALAERLKK-------------------------A-Y-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--YADYFTV 175 (344)
T ss_pred HHHHHHHHH-------------------------h-c-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--hCCEEEE
Confidence 111111111 0 0 246789999887 57899999998854 6999999
Q ss_pred ccCCCccceeccccccccccChHHHHHHHHHHHhhcC-----CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-----LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 402 N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-----~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
|++|| ... |....++++.+.+|+++|+++++ +||+||++.... .+...+++++++++|+|+|++|+|
T Consensus 176 N~scP---~~~---g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~--~~~~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 176 NISSP---NTP---GLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLS--DEELDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred EccCC---CCC---CcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEeCC
Confidence 99999 433 33448899999999999999987 999999996543 346789999999999999999999
Q ss_pred ccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-CCc
Q psy9514 477 TREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-PAP 551 (611)
Q Consensus 477 ~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~iP 551 (611)
+...... ... ......+++++++ .|++++++.+... ++|
T Consensus 248 ~~~~~~~----------------------------------~~~--~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ip 291 (344)
T PRK05286 248 TLSRDGL----------------------------------KGL--PNADEAGGLSGRPLFERSTEVIRRLYKELGGRLP 291 (344)
T ss_pred ccccccc----------------------------------ccc--ccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8532200 000 0001122345443 7888888877643 699
Q ss_pred EEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 552 VIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
||++|||.|++|+.+++..| ||+|||||+++.+ ||+|.+|+++
T Consensus 292 Iig~GGI~s~eda~e~l~aG--Ad~V~v~~~~~~~gP~~~~~i~~~ 335 (344)
T PRK05286 292 IIGVGGIDSAEDAYEKIRAG--ASLVQIYSGLIYEGPGLVKEIVRG 335 (344)
T ss_pred EEEECCCCCHHHHHHHHHcC--CCHHHHHHHHHHhCchHHHHHHHH
Confidence 99999999999999999976 9999999999885 9999999875
No 38
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=99.90 E-value=1.6e-22 Score=214.28 Aligned_cols=268 Identities=18% Similarity=0.175 Sum_probs=180.4
Q ss_pred cccccCeeecCcEEeccCCCCCCHH-HHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhh
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLP-FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYV 327 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlp-fRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~ 327 (611)
+.++.+++|+|++++|.=++ ++.. .+++. ..|+|.+++..+...+-. |.+..+ + ..++...- .+.-.|-.-..
T Consensus 40 ~~~~~Gl~l~nPi~~AsG~~-~~~~~~~~~~-~~G~Gavv~ktit~~~~~-gn~~pr-~-~~~~~~~~-~~n~~g~~n~g 113 (327)
T cd04738 40 EVEVFGLTFPNPVGLAAGFD-KNAEAIDALL-ALGFGFVEVGTVTPRPQP-GNPKPR-L-FRLPEDEA-LINRMGFNNDG 113 (327)
T ss_pred ceEECCEECCCCCEeCcCCC-CCHHHHHHHH-HCCCcEEEEeccCCCCCC-CCCCCC-E-EEccCccc-eeecCCCCCcc
Confidence 57788999999999985333 4443 44444 789999999988765422 221111 0 00110000 00000100000
Q ss_pred HHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCc-------hHHHHHHHHHHHHhcccceEE
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN-------PYVLTKCTQLLEEQMVVDFVD 400 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~-------p~~~~~aA~~l~~~~g~D~IE 400 (611)
+....+.+.+ +...+.++++||+|++ .++++++++.+.. ++|+||
T Consensus 114 ~~~~~~~l~~--------------------------~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~--~ad~ie 165 (327)
T cd04738 114 ADAVAKRLKK--------------------------RRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP--YADYLV 165 (327)
T ss_pred HHHHHHHHHH--------------------------hccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh--hCCEEE
Confidence 1111111110 0012468999999987 6788888888754 599999
Q ss_pred eccCCCccceeccccccccccChHHHHHHHHHHHhhcC-----CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 401 VNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-----LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 401 LN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-----~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
||++|| ... |...+++++.+.+++++|++.+. +||+||++..+. .+...+++++++++|+++|++|+
T Consensus 166 lN~scP---~~~---g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~--~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 166 VNVSSP---NTP---GLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLS--DEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred EECCCC---CCC---ccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCC--HHHHHHHHHHHHHcCCcEEEEEC
Confidence 999999 332 34458899999999999999886 999999986543 34678999999999999999999
Q ss_pred cccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-CC
Q psy9514 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-PA 550 (611)
Q Consensus 476 R~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~i 550 (611)
|+..+.+... +. .....+++++++ .|++++++.+... ++
T Consensus 238 ~~~~~~~~~~------------------------~~------------~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 238 TTISRPGLLR------------------------SP------------LANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred Cccccccccc------------------------cc------------ccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 9865431000 00 001112244443 4788888877643 69
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 551 PVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
|||++|||.|++|+.+++..| ||+|||||+++.+ ||+|.+|.++
T Consensus 282 pIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~~~gP~~~~~i~~~ 326 (327)
T cd04738 282 PIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLVYEGPGLVKRIKRE 326 (327)
T ss_pred cEEEECCCCCHHHHHHHHHcC--CCHHhccHHHHhhCcHHHHHHHhc
Confidence 999999999999999999976 9999999999986 9999999765
No 39
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.89 E-value=1.2e-21 Score=207.60 Aligned_cols=271 Identities=15% Similarity=0.110 Sum_probs=178.5
Q ss_pred ccccCeeecCcEEec--cCCCCCCHHHHHHHHHcCCCEEEecCcccchhhc-CChhhhHhHh--hccCCCeEE--EEecC
Q psy9514 250 SEKKKIDWQGKLYLS--PLTTVGNLPFRRLCKKWGADITCSEMAVATELLK-SSPQEWALIK--RHESEDLFG--VQLCG 322 (611)
Q Consensus 250 ~ei~~l~l~nrivlA--PMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~-g~~~e~~l~~--~h~~e~~~~--vQi~g 322 (611)
.++.+++|+|++++| |++. +...-+.+...|++.+++..+...+..+ |.+....... +++...-+. +-+..
T Consensus 4 v~~~Gl~l~nPv~~ASg~~~~--~~e~~~~~~~~G~Gavv~ktit~~~~~~~gn~~pr~~~~~~~~~~~~~~in~~g~~n 81 (325)
T cd04739 4 TTYLGLSLKNPLVASASPLSR--NLDNIRRLEDAGAGAIVLPSLFEEQIEREAQELDRFLTYGSSFAEALSYFPEYGRYN 81 (325)
T ss_pred EEECCEecCCCCEeCCcCCCC--CHHHHHHHHHCCCcEEEecccchhhhhhcCCCCCceEeecccCcCcccccccccccC
Confidence 567799999999996 6654 3333333668899999999887665322 2221100000 111111000 00001
Q ss_pred CChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccc-cccceeeecccCchHHHHHHHHHHHHhcccceEEe
Q psy9514 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ-RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV 401 (611)
Q Consensus 323 ~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~-~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IEL 401 (611)
.+.+.+.+ .+.+ +.. .+.++++|++|++++.+.++++.+++ +|+|+|||
T Consensus 82 ~g~~~~~~---~i~~--------------------------~~~~~~~pvi~si~g~~~~~~~~~a~~~~~-~gad~iEl 131 (325)
T cd04739 82 LGPEEYLE---LIRR--------------------------AKRAVSIPVIASLNGVSAGGWVDYARQIEE-AGADALEL 131 (325)
T ss_pred cCHHHHHH---HHHH--------------------------HHhccCCeEEEEeCCCCHHHHHHHHHHHHh-cCCCEEEE
Confidence 11111111 0100 001 14688999999999999999999864 58999999
Q ss_pred ccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccc
Q psy9514 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481 (611)
Q Consensus 402 N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr 481 (611)
|++||- ...+.+|+.+ ++.+.++++++++.+++||+||++... ....++++.++++|+++|++|+|+....
T Consensus 132 N~s~~~--~~~~~~g~~~---~~~~~eiv~~v~~~~~iPv~vKl~p~~----~~~~~~a~~l~~~Gadgi~~~nt~~~~~ 202 (325)
T cd04739 132 NIYALP--TDPDISGAEV---EQRYLDILRAVKSAVTIPVAVKLSPFF----SALAHMAKQLDAAGADGLVLFNRFYQPD 202 (325)
T ss_pred eCCCCC--CCCCcccchH---HHHHHHHHHHHHhccCCCEEEEcCCCc----cCHHHHHHHHHHcCCCeEEEEcCcCCCC
Confidence 999952 3334466554 467899999999999999999998543 3577899999999999999999974321
Q ss_pred cccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCH
Q psy9514 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561 (611)
Q Consensus 482 ~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~ 561 (611)
.||+.. ......| + .|....+..+++++++.+. .++||||+|||.|+
T Consensus 203 ----id~~~~------------------~~~~~~g-----l-----SG~~~~~~al~~v~~v~~~-~~ipIig~GGI~s~ 249 (325)
T cd04739 203 ----IDLETL------------------EVVPNLL-----L-----SSPAEIRLPLRWIAILSGR-VKASLAASGGVHDA 249 (325)
T ss_pred ----cccccc------------------ceecCCC-----c-----CCccchhHHHHHHHHHHcc-cCCCEEEECCCCCH
Confidence 122100 0000000 0 0112223357788887764 48999999999999
Q ss_pred HHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHcc
Q psy9514 562 EDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEK 596 (611)
Q Consensus 562 eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g 596 (611)
+|+.+++..| ||+|||||+++. .|.++.+|.++
T Consensus 250 ~Da~e~l~aG--A~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 250 EDVVKYLLAG--ADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHHHHHHHcC--CCeeEEehhhhhcCchHHHHHHHH
Confidence 9999999976 999999999999 59999988765
No 40
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.87 E-value=1.3e-20 Score=200.49 Aligned_cols=280 Identities=14% Similarity=0.076 Sum_probs=175.9
Q ss_pred cccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
..++.+|+|+|++++|.=+-.++...-+.+...|++.++|..+...+. .+.... .....++.++.+
T Consensus 4 ~~~~~Gl~l~nPv~~asg~~~~~~~~~~~~~~~g~Gavv~kti~~~~~-~~~~~~-------------~~~~~~~~~~~~ 69 (334)
T PRK07565 4 STTYLGLTLRNPLVASASPLSESVDNVKRLEDAGAGAVVLKSLFEEQI-RHEAAE-------------LDRHLTHGTESF 69 (334)
T ss_pred eEEECCEecCCCCEecCcCCCCCHHHHHHHHHCCCeEEEEeeCCHHHh-hccccc-------------cccccccCCCcc
Confidence 356789999999988743322343322336678999999998764332 111100 001111112222
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCcccc-ccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCc
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL-QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~-~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~ 407 (611)
.+....++..+ + -|.| .+. +..... .+. ..+.++++|++|.+++++.++|+.+++ +|+|+||||++||.
T Consensus 70 ~~~~~~~n~~g---l--~n~g--~d~-~~~~i~-~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~-agad~ielN~scpp 139 (334)
T PRK07565 70 AEALDYFPEPA---K--FYVG--PEE-YLELIR-RAKEAVDIPVIASLNGSSAGGWVDYARQIEQ-AGADALELNIYYLP 139 (334)
T ss_pred hhhhhhhhhhh---c--cCcC--HHH-HHHHHH-HHHHhcCCcEEEEeccCCHHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence 22111111100 0 0111 000 000000 011 114689999999999999999999864 59999999999963
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
......|.. .+..+.++++++++.+++||+||++.+. ....++++.++++|+++|++|+|..... .|
T Consensus 140 --~~~~~~g~~---~~~~~~eil~~v~~~~~iPV~vKl~p~~----~~~~~~a~~l~~~G~dgI~~~n~~~~~~----~d 206 (334)
T PRK07565 140 --TDPDISGAE---VEQRYLDILRAVKSAVSIPVAVKLSPYF----SNLANMAKRLDAAGADGLVLFNRFYQPD----ID 206 (334)
T ss_pred --CCCCCcccc---HHHHHHHHHHHHHhccCCcEEEEeCCCc----hhHHHHHHHHHHcCCCeEEEECCcCCCC----cC
Confidence 222333433 3456789999999999999999998643 3467889999999999999999974321 22
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~ 567 (611)
|.. ...+...|. .+....+..+++++++.+. .++||||+|||.|++|+.++
T Consensus 207 ~~~------------------~~~~~~~gl----------sg~~~~~~al~~v~~~~~~-~~ipIig~GGI~s~~Da~e~ 257 (334)
T PRK07565 207 LET------------------LEVVPGLVL----------STPAELRLPLRWIAILSGR-VGADLAATTGVHDAEDVIKM 257 (334)
T ss_pred hhh------------------cccccCCCC----------CCchhhhHHHHHHHHHHhh-cCCCEEEECCCCCHHHHHHH
Confidence 210 000000010 0112223356777777665 48999999999999999999
Q ss_pred HHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 568 LKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 568 l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
+..| ||+|||||+++.+ |.++.+|.++
T Consensus 258 l~aG--A~~V~v~t~~~~~g~~~~~~i~~~ 285 (334)
T PRK07565 258 LLAG--ADVVMIASALLRHGPDYIGTILRG 285 (334)
T ss_pred HHcC--CCceeeehHHhhhCcHHHHHHHHH
Confidence 9976 9999999999995 9999988765
No 41
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=99.85 E-value=7.9e-20 Score=196.29 Aligned_cols=193 Identities=15% Similarity=0.205 Sum_probs=146.6
Q ss_pred ccceeeeccc-CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE
Q psy9514 368 ANLFGVQLCG-NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446 (611)
Q Consensus 368 ~~~~ivQi~g-~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR 446 (611)
+.++++++++ .+++++.+.++++++ +|+|+||||++||.... .++.|..+.++|+.+.+|+++|+..+.+||.||+.
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~-~GaD~iELNiSCPn~~~-~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEE-TGVDALEINFSCPHGMP-ERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCCC-cCccchhhccCHHHHHHHHHHHHHhhcCceEEEeC
Confidence 4689999977 799999999999974 68999999999995322 24568899999999999999999999999999977
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
. +.+....+++++.++|+++|++.+++.... +++ .+...+. +.+.+.+
T Consensus 191 P----n~t~i~~ia~aa~~~Gadgi~liNT~~~~~-----~ID---------------~~t~~p~--------~~~~~~~ 238 (385)
T PLN02495 191 P----NITDITQPARVALKSGCEGVAAINTIMSVM-----GIN---------------LDTLRPE--------PCVEGYS 238 (385)
T ss_pred C----ChhhHHHHHHHHHHhCCCEEEEecccCccc-----ccc---------------cccCccc--------cccCCCC
Confidence 4 344577899999999999999999875311 000 0000000 0111222
Q ss_pred ccccccCCc----cHHHHHHHHhhCC-----CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 527 REQRYTKQA----DWDYIEKCAQLCS-----PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 527 r~g~~~~~a----~~~~i~~~~k~~~-----~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
..|.+.+++ ....++++++... ++||||+|||.|++|+.+++..| |+.|+|+.+++.+ |.++.+|.++
T Consensus 239 ~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aG--As~VQv~Ta~~~~Gp~vi~~i~~~ 316 (385)
T PLN02495 239 TPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLG--ADTVQVCTGVMMHGYPLVKNLCAE 316 (385)
T ss_pred CCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhC--CCceeEeeeeeecCcHHHHHHHHH
Confidence 233355443 3444555555432 59999999999999999999998 9999999999999 9999999875
No 42
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=99.83 E-value=2.9e-19 Score=188.12 Aligned_cols=276 Identities=11% Similarity=0.081 Sum_probs=176.3
Q ss_pred cccccCeeecCcEEeccCCCCCCHH-HHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhh
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLP-FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYV 327 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlp-fRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~ 327 (611)
+.++.+|+|+|++++|.=+...+.. +++ +...|++.+++..+...+. .|.+.. .+++ .+..-.-.+.+...+++.
T Consensus 3 ~~~~~Gl~l~NPv~~AsG~~~~~~e~~~~-~~~~g~Gavv~ktit~~p~-~gn~~p-r~~~-~~~~~~N~~Gl~n~g~~~ 78 (310)
T PRK02506 3 STQIAGFKFDNCLMNAAGVYCMTKEELEE-VEASAAGAFVTKSATLEPR-PGNPEP-RYAD-TPLGSINSMGLPNLGFDY 78 (310)
T ss_pred ceEECCEECCCCCEeCCCCCCCCHHHHHH-HHHcCCcEEEeCccCCCCC-CCCCCC-eEEE-CcchhhccCCCCCcCHHH
Confidence 3567899999999998544333443 444 6678999999998887653 222211 0110 000000000000111111
Q ss_pred HHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccc--cccceeeecccCchHHHHHHHHHHHHhcc-cceEEeccC
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ--RANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLG 404 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~--~~~~~ivQi~g~~p~~~~~aA~~l~~~~g-~D~IELN~g 404 (611)
+.+ .+. .+.. .+.++++++.|.+++++.+.|+.++ .++ +|+||||++
T Consensus 79 ~~~---~i~--------------------------~~~~~~~~~pvI~Si~G~~~~~~~~~a~~~~-~~g~ad~iElN~S 128 (310)
T PRK02506 79 YLD---YVL--------------------------ELQKKGPNKPHFLSVVGLSPEETHTILKKIQ-ASDFNGLVELNLS 128 (310)
T ss_pred HHH---HHH--------------------------HHHhhcCCCCEEEEEEeCcHHHHHHHHHHHh-hcCCCCEEEEECC
Confidence 111 010 0111 1468999999999999999999986 455 899999999
Q ss_pred CCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccccccccc
Q psy9514 405 CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484 (611)
Q Consensus 405 CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~ 484 (611)
|| ... + +..+-.+++.+.+|++++++.+.+||.||+.... +.....+++..+.+.|++.|+...+...+...
T Consensus 129 cP---n~~-~-~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~--~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~i- 200 (310)
T PRK02506 129 CP---NVP-G-KPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYF--DIVHFDQAAAIFNKFPLAFVNCINSIGNGLVI- 200 (310)
T ss_pred CC---CCC-C-ccccccCHHHHHHHHHHHHHhcCCccEEecCCCC--CHHHHHHHHHHhCcCceEEEEEeccCCCceEE-
Confidence 99 332 2 5566678999999999999999999999988654 22334444455556678887776654211100
Q ss_pred CcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-CCcEEEecCCC
Q psy9514 485 QADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-PAPLYGNGDIL 559 (611)
Q Consensus 485 ~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~iPVIgnGgI~ 559 (611)
|+ .-....+.+.+..|++++++ ...+++++.+... ++||||+|||.
T Consensus 201 --D~---------------------------~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig~GGI~ 251 (310)
T PRK02506 201 --DP---------------------------EDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIGTGGVK 251 (310)
T ss_pred --ec---------------------------CCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence 00 00000111112223344433 5677777777653 69999999999
Q ss_pred CHHHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHccc
Q psy9514 560 SYEDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEKK 597 (611)
Q Consensus 560 s~eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g~ 597 (611)
|++|+.+++..| ||+|||+.+++. +|.+|.+|.++-
T Consensus 252 s~~da~e~i~aG--A~~Vqv~ta~~~~gp~~~~~i~~~L 288 (310)
T PRK02506 252 TGRDAFEHILCG--ASMVQVGTALHKEGPAVFERLTKEL 288 (310)
T ss_pred CHHHHHHHHHcC--CCHHhhhHHHHHhChHHHHHHHHHH
Confidence 999999999998 999999999998 799999998763
No 43
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.81 E-value=1.5e-18 Score=180.75 Aligned_cols=275 Identities=19% Similarity=0.190 Sum_probs=183.5
Q ss_pred ccccCeeecCcEEeccCCCCCC-HHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 250 SEKKKIDWQGKLYLSPLTTVGN-LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~~gn-lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
.++-+++|+|+++||.=....+ ..++.+. ..|++.+.+..+.-.+.. |.+. -++++.++.+. .+.-.|..-..+
T Consensus 4 ~~~~Gl~f~NPl~lAaG~~~~~~~~~~~~~-~~g~G~i~~ktvt~~pq~-Gnp~-PR~~~l~~~~~--~iN~mG~~N~G~ 78 (310)
T COG0167 4 TEILGLKFPNPLGLAAGFDGKNGEELDALA-ALGFGAIVTKTVTPEPQE-GNPK-PRLFRLPEDEG--LINRMGFNNPGA 78 (310)
T ss_pred eeecceecCCCCeEcccCCccCHHHHHHHH-hcCCceEEecCCCCcCCC-CCCC-CeEEEecCccc--HHHhcCCCchhH
Confidence 3478999999999976444323 3344444 456999999887766432 2210 01111010000 011111111111
Q ss_pred HHHHHHHhhh-ccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCc
Q psy9514 329 TKCTQLLEEQ-MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407 (611)
Q Consensus 329 ~~~a~~l~~~-~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~ 407 (611)
....+.+... .... ....+++....+...+.+.+.+..+.+...+|+||||.+||
T Consensus 79 ~~~~~~l~~~~~~~~-----------------------~~~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScP- 134 (310)
T COG0167 79 DAFLEELKLAKYEGK-----------------------PIGVNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCP- 134 (310)
T ss_pred HHHHHHHHhhhhccC-----------------------CcCcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCC-
Confidence 1111111100 0000 01245777888889999999999887543499999999999
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccc-cccCc
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR-YTKQA 486 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr-~~~~a 486 (611)
.+ .| |..|..+++.+.++++++++...+||.||+-. +..+..++++.+.++|+|+|++.+++.... ...
T Consensus 135 --nt-~g-~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P----~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~-- 204 (310)
T COG0167 135 --NT-PG-GRALGQDPELLEKLLEAVKAATKVPVFVKLAP----NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDL-- 204 (310)
T ss_pred --CC-CC-hhhhccCHHHHHHHHHHHHhcccCceEEEeCC----CHHHHHHHHHHHHHcCCcEEEEEeeccccccccc--
Confidence 53 44 88888899999999999999999999999764 557888999999999999999999775322 000
Q ss_pred ChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC----ccHHHHHHHHhhCC-CCcEEEecCCCCH
Q psy9514 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ----ADWDYIEKCAQLCS-PAPLYGNGDILSY 561 (611)
Q Consensus 487 dw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~----a~~~~i~~~~k~~~-~iPVIgnGgI~s~ 561 (611)
....+. .....|+++++ -..++++++.+... ++||||+|||.|+
T Consensus 205 -------------------~~~~~~------------~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~s~ 253 (310)
T COG0167 205 -------------------ETKKPV------------LANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIETG 253 (310)
T ss_pred -------------------cccccc------------cCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcCcH
Confidence 000000 01112334444 36788888887642 5999999999999
Q ss_pred HHHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 562 EDYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 562 eda~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
+||.+++..| |++|+||.+++.+ |++|.+|.++
T Consensus 254 ~DA~E~i~aG--A~~vQv~Tal~~~Gp~i~~~I~~~ 287 (310)
T COG0167 254 EDALEFILAG--ASAVQVGTALIYKGPGIVKEIIKG 287 (310)
T ss_pred HHHHHHHHcC--CchheeeeeeeeeCchHHHHHHHH
Confidence 9999999998 9999999999999 9999999875
No 44
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=99.80 E-value=2.9e-18 Score=182.29 Aligned_cols=268 Identities=15% Similarity=0.164 Sum_probs=177.7
Q ss_pred cccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
+.+..+++|+|++++|.=.+ .+...-+.....|++.+++..+...+-. |.+.. .++. .+.+.- .+.-.|-.-...
T Consensus 47 ~~~~~Gl~l~NPi~lAsG~~-~~~~~~~~~~~~G~Gavv~kTvt~~p~~-gn~~P-r~~~-~~~~~~-~iN~~Gl~n~G~ 121 (335)
T TIGR01036 47 EVTVLGLKFPNPLGLAAGFD-KDGEAIDALGAMGFGFLEIGTVTPKPQP-GNPRP-RLFR-LIEDEA-LINRMGFNNHGA 121 (335)
T ss_pred cEEECCEECCCCcEeCCccC-CCHHHHHHHHhcCCCEEEeCCcCCCCCC-CCCCC-CEEE-Cccccc-cccCCCCCChhH
Confidence 56788999999999974333 4443333344669999999988865422 22110 0111 110000 011111111111
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccC-------chHHHHHHHHHHHHhcccceEEe
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN-------NPYVLTKCTQLLEEQMVVDFVDV 401 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~-------~p~~~~~aA~~l~~~~g~D~IEL 401 (611)
....+.+.+ .....+++++++++ +.+++++.++.+.+ .+|+|||
T Consensus 122 ~~~l~~i~~---------------------------~~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~--~ad~iEl 172 (335)
T TIGR01036 122 DVLVERLKR---------------------------ARYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGP--LADYLVV 172 (335)
T ss_pred HHHHHHHhh---------------------------ccCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhh--hCCEEEE
Confidence 111111111 01235678888777 57899999998864 5999999
Q ss_pred ccCCCccceeccccccccccChHHHHHHHHHHHhhcC-------CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-------LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 402 N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-------~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
|.+|| ... |...+++++.+.+++++|++.+. +||.||+-.... .+....+++.++++|+++|++.
T Consensus 173 NlScP---n~~---~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~--~~~i~~ia~~~~~~GadGi~l~ 244 (335)
T TIGR01036 173 NVSSP---NTP---GLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLT--ESDLEDIADSLVELGIDGVIAT 244 (335)
T ss_pred EccCC---CCC---CcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCC--HHHHHHHHHHHHHhCCcEEEEE
Confidence 99999 432 45556889999999999998876 999999775432 2467889999999999999999
Q ss_pred ccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-C
Q psy9514 475 GRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-P 549 (611)
Q Consensus 475 gR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~ 549 (611)
+++..... +. +....+..|++++++ ...+++++.+... +
T Consensus 245 NT~~~~~~-----------------------------~~-------~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ 288 (335)
T TIGR01036 245 NTTVSRSL-----------------------------VQ-------GPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGR 288 (335)
T ss_pred CCCCcccc-----------------------------cc-------CccccCCCCcccCHHHHHHHHHHHHHHHHHhCCC
Confidence 98743210 00 000001223355544 4566777666543 6
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh-CCchHHHHHcc
Q psy9514 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI-KPWIFQEIKEK 596 (611)
Q Consensus 550 iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~-dP~lf~ei~~g 596 (611)
+||||+|||.|++|+.+++..| ||+|+||++++. +|+++.+|.++
T Consensus 289 ipiig~GGI~~~~da~e~l~aG--A~~Vqv~ta~~~~Gp~~~~~i~~~ 334 (335)
T TIGR01036 289 LPIIGVGGISSAQDALEKIRAG--ASLLQIYSGFIYWGPPLVKEIVKE 334 (335)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CcHHHhhHHHHHhCchHHHHHHhh
Confidence 9999999999999999999998 999999999988 59999999865
No 45
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=99.80 E-value=3.7e-18 Score=178.54 Aligned_cols=277 Identities=15% Similarity=0.105 Sum_probs=169.6
Q ss_pred ccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHH
Q psy9514 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLT 329 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~ 329 (611)
.++.+|+|+|++++|.=. .++...-+.+.+.|++.+++..+...+.. |.+.. .+...+..+.. +.-.|-....+.
T Consensus 4 ~~~~Gl~l~nPi~~asG~-~~~~~~~~~~~~~G~Gavv~ksvt~~~~~-gn~~p-r~~~~~~~~~~--~n~~G~~n~g~~ 78 (295)
T PF01180_consen 4 TNFCGLTLKNPIGLASGL-DKNGEEIKRLFDAGFGAVVTKSVTPEPRE-GNPEP-RIFRLPEGESI--LNSMGLPNPGLE 78 (295)
T ss_dssp EEETTEEESSSEEE-TTS-STSSHHHHHHHHHSSSEEEEEEE-SSGB---SSSS--EEEETTETEE--EE---S-BSHHH
T ss_pred EEECCEEcCCCcEECCcC-CCCchhhhhhhcCCccEEEeccccccccc-cccCC-cEEeecccccc--ccccCCChHHHH
Confidence 467899999999998522 23333333444678999999988876632 22210 11111111111 111111111111
Q ss_pred HHHHHHhhhccceeeeccCCCCcchhhccCCCcccc-ccccceeeecccCc---hHHHHHHHHHHHHhcccceEEeccCC
Q psy9514 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL-QRANLFGVQLCGNN---PYVLTKCTQLLEEQMVVDFVDVNLGC 405 (611)
Q Consensus 330 ~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~-~~~~~~ivQi~g~~---p~~~~~aA~~l~~~~g~D~IELN~gC 405 (611)
...+.+.+.. . ... ....++++++.+.+ .+++.+.|+.++ .++|+||||++|
T Consensus 79 ~~~~~~~~~~--------------~--------~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~--~~ad~lElN~Sc 134 (295)
T PF01180_consen 79 YYLERLRPIL--------------K--------EAKKDVDIPVIASINGDSEEEIEDWAELAKRLE--AGADALELNLSC 134 (295)
T ss_dssp HHHHHHHHTH--------------H--------HTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH--HHCSEEEEESTS
T ss_pred HHHHHHHHHh--------------h--------hcccccceeEEEEeecCCchhHHHHHHHHHHhc--CcCCceEEEeec
Confidence 1111111100 0 000 01468899999999 899999999886 689999999999
Q ss_pred CccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccC
Q psy9514 406 PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 485 (611)
Q Consensus 406 P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ 485 (611)
| ... .+..+.+++....++++.+++..++||.||+-....+ .....++..+.+.|+++|++.+++.....
T Consensus 135 P---n~~--~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~p~~~~--~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~--- 204 (295)
T PF01180_consen 135 P---NVP--GGRPFGQDPELVAEIVRAVREAVDIPVFVKLSPNFTD--IEPFAIAAELAADGADGIVAINTFGQGDA--- 204 (295)
T ss_dssp T---TST--TSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-STSSC--HHHHHHHHHHHTHTECEEEE---EEEEE----
T ss_pred c---CCC--CccccccCHHHHHHHHHHHHhccCCCEEEEecCCCCc--hHHHHHHHHhhccceeEEEEecCccCccc---
Confidence 9 444 4556778899999999999999999999998764332 33345666677899999998887533210
Q ss_pred cChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-CCcEEEecCCCC
Q psy9514 486 ADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS-PAPLYGNGDILS 560 (611)
Q Consensus 486 adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~-~iPVIgnGgI~s 560 (611)
.+ .+..........+++++++ .+.+++++.+... ++||||+|||.|
T Consensus 205 --id---------------------------~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s 255 (295)
T PF01180_consen 205 --ID---------------------------LETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIHS 255 (295)
T ss_dssp --EE---------------------------TTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--S
T ss_pred --cc---------------------------chhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcCC
Confidence 00 0000000000112234433 5677888877654 599999999999
Q ss_pred HHHHHHHHHcCCCccEEEEcHHh-hhCCchHHHHHcc
Q psy9514 561 YEDYTESLKKSPSISGVMIGRGA-LIKPWIFQEIKEK 596 (611)
Q Consensus 561 ~eda~~~l~~G~~aD~VmIGRga-L~dP~lf~ei~~g 596 (611)
++|+.+++..| ||+|+|+.++ +.+|+++.+|.++
T Consensus 256 ~~da~e~l~aG--A~~Vqv~Sal~~~Gp~~~~~i~~~ 290 (295)
T PF01180_consen 256 GEDAIEFLMAG--ASAVQVCSALIYRGPGVIRRINRE 290 (295)
T ss_dssp HHHHHHHHHHT--ESEEEESHHHHHHGTTHHHHHHHH
T ss_pred HHHHHHHHHhC--CCHheechhhhhcCcHHHHHHHHH
Confidence 99999999998 9999999999 6799999999875
No 46
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.76 E-value=3.1e-17 Score=172.05 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=143.5
Q ss_pred cccccCeeecCcEEeccCCCCC------CHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecC
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVG------NLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~g------nlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g 322 (611)
..++-+..|.-++++|||+..+ +..+++.+.+.|+.+++++|.... ...+. ...+.++.+||++
T Consensus 55 ~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~---------~~~i~-~~~~~~~~~ql~~ 124 (299)
T cd02809 55 STTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTS---------LEEVA-AAAPGPRWFQLYV 124 (299)
T ss_pred ceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCC---------HHHHH-HhcCCCeEEEEee
Confidence 3566678888999999997543 578999999999999999877321 11111 1112455555554
Q ss_pred CChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEec
Q psy9514 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402 (611)
Q Consensus 323 ~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN 402 (611)
.. +++.+.++++.+. ..|+++|+||
T Consensus 125 ~~------------------------------------------------------~~~~~~~~i~~~~-~~g~~~i~l~ 149 (299)
T cd02809 125 PR------------------------------------------------------DREITEDLLRRAE-AAGYKALVLT 149 (299)
T ss_pred cC------------------------------------------------------CHHHHHHHHHHHH-HcCCCEEEEe
Confidence 30 3333344444443 3489999999
Q ss_pred cCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccccccc
Q psy9514 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482 (611)
Q Consensus 403 ~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~ 482 (611)
++||..-.+ +..++++.+++.++.||++|..++ .+.++.+.++|+++|+|+++.+.+.
T Consensus 150 ~~~p~~~~~-------------~~~~~i~~l~~~~~~pvivK~v~s--------~~~a~~a~~~G~d~I~v~~~gG~~~- 207 (299)
T cd02809 150 VDTPVLGRR-------------LTWDDLAWLRSQWKGPLILKGILT--------PEDALRAVDAGADGIVVSNHGGRQL- 207 (299)
T ss_pred cCCCCCCCC-------------CCHHHHHHHHHhcCCCEEEeecCC--------HHHHHHHHHCCCCEEEEcCCCCCCC-
Confidence 999942111 344778888888899999996532 3568889999999999987653332
Q ss_pred ccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCH
Q psy9514 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSY 561 (611)
Q Consensus 483 ~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~ 561 (611)
+.+++.|..+.++.+... ++|||++|||.+.
T Consensus 208 ------------------------------------------------~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~ 239 (299)
T cd02809 208 ------------------------------------------------DGAPATIDALPEIVAAVGGRIEVLLDGGIRRG 239 (299)
T ss_pred ------------------------------------------------CCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCH
Confidence 345667788888776553 5999999999999
Q ss_pred HHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 562 EDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 562 eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
.|+.+++..| ||+|||||.+|..
T Consensus 240 ~d~~kal~lG--Ad~V~ig~~~l~~ 262 (299)
T cd02809 240 TDVLKALALG--ADAVLIGRPFLYG 262 (299)
T ss_pred HHHHHHHHcC--CCEEEEcHHHHHH
Confidence 9999999987 9999999966654
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.75 E-value=5.1e-17 Score=173.78 Aligned_cols=234 Identities=13% Similarity=0.109 Sum_probs=158.9
Q ss_pred ccccCeeecCcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 250 SEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
..++.+.|.+++++|||.++++.+||.+|.++|+ ++ +.++.+. .+++...++.
T Consensus 36 ~~i~~~~l~~PivlAPMagVtd~~fr~~~~~~Galgv-----vsaegl~----------~~~~~~~~~~----------- 89 (369)
T TIGR01304 36 WQIDAYRFELPFIAHPMDALVSPEFAIELGELGGLGV-----LNLEGLW----------GRHEDPDPAI----------- 89 (369)
T ss_pred eEEcceecCCceeecCCCcccCHHHHHHHHHcCCccc-----ccchHHH----------hcCCCHHHHH-----------
Confidence 4678899999999999999999999999999999 76 2222222 1222222222
Q ss_pred HHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeeccc--CchHHHHHHHHHHHHhcccceEEeccCCC
Q psy9514 329 TKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCG--NNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g--~~p~~~~~aA~~l~~~~g~D~IELN~gCP 406 (611)
+||++ ++++. .++++.+.+. +++.
T Consensus 90 --------------------------------------------~QI~g~~~~~~~-a~aa~~~~e~-~~~~-------- 115 (369)
T TIGR01304 90 --------------------------------------------AKIAEAYEEGDQ-AAATRLLQEL-HAAP-------- 115 (369)
T ss_pred --------------------------------------------HHHhhcCCChHH-HHHHHHHHHc-CCCc--------
Confidence 34444 23333 4455544321 1111
Q ss_pred ccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccccccc-ccC
Q psy9514 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY-TKQ 485 (611)
Q Consensus 407 ~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~-~~~ 485 (611)
.+|+++.+++++|++.. ++||+|++. ..+.++++.++++|+++|++|||++.|.| ...
T Consensus 116 --------------~~p~l~~~ii~~vr~a~---VtvkiRl~~----~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~ 174 (369)
T TIGR01304 116 --------------LKPELLGERIAEVRDSG---VITAVRVSP----QNAREIAPIVVKAGADLLVIQGTLVSAEHVSTS 174 (369)
T ss_pred --------------cChHHHHHHHHHHHhcc---eEEEEecCC----cCHHHHHHHHHHCCCCEEEEeccchhhhccCCC
Confidence 36889999999999863 999999842 36789999999999999999999999988 556
Q ss_pred cChhHHHHHhhhcccC----chhhhhcchhhHhcCCceEEe-cccccccc-cc--CCccHHHHHHHHhh-------CC--
Q psy9514 486 ADWDYIEKCAQLCSRD----NNIIHNFMPKFRDWGASLITL-HGRTREQR-YT--KQADWDYIEKCAQL-------CS-- 548 (611)
Q Consensus 486 adw~~i~~~~~~~~~~----~~~~~~~~~~l~~~G~~~iti-hgrtr~g~-~~--~~a~~~~i~~~~k~-------~~-- 548 (611)
++|..|.++....+-- .-...+.+..+.+.|++.|.+ ++.+...+ +. +.+....+.+++.. ..
T Consensus 175 ~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r 254 (369)
T TIGR01304 175 GEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGR 254 (369)
T ss_pred CCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 7899877766543210 111223444556699999873 11111111 11 23333445544321 21
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
.+|||+.|+|.+..|+.+++..| +|+||||+.++.=
T Consensus 255 ~vpVIAdGGI~tg~di~kAlAlG--AdaV~iGt~~a~a 290 (369)
T TIGR01304 255 YVHVIADGGIETSGDLVKAIACG--ADAVVLGSPLARA 290 (369)
T ss_pred CceEEEeCCCCCHHHHHHHHHcC--CCEeeeHHHHHhh
Confidence 49999999999999999999998 9999999988763
No 48
>PLN02826 dihydroorotate dehydrogenase
Probab=99.72 E-value=9.6e-16 Score=166.35 Aligned_cols=292 Identities=15% Similarity=0.115 Sum_probs=181.8
Q ss_pred cccccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhH
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVL 328 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~ 328 (611)
+.++.+++|+|++.||.=..-....++.+. .+|+|.+.+..+...|- .|++ .-++++..+.. -.+.-.|-+=..+
T Consensus 75 ~~~~~Gl~f~NPvglAAG~dkn~~~~~~l~-~lGfG~vevgTVT~~pq-~GNp-~PR~frl~~~~--aiiN~~Gfnn~G~ 149 (409)
T PLN02826 75 GVEVWGRTFSNPIGLAAGFDKNAEAVEGLL-GLGFGFVEIGSVTPLPQ-PGNP-KPRVFRLREEG--AIINRYGFNSEGI 149 (409)
T ss_pred ceEECCEECCCCCEECcccCCCHHHHHHHH-hcCCCeEEeCCccCCCC-CCCC-CCcEEecCCCc--eeEecCCCCCcCH
Confidence 578889999999999975443223444444 56999999988776542 2332 11222211111 1222233222222
Q ss_pred HHHHHHHhhhccceeee-ccCCCCcchhhccCCCccccccccceeeecccC-----chHHHHHHHHHHHHhcccceEEec
Q psy9514 329 TKCTQLLEEQMAVDFVD-VNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGN-----NPYVLTKCTQLLEEQMVVDFVDVN 402 (611)
Q Consensus 329 ~~~a~~l~~~~~v~~id-ln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~-----~p~~~~~aA~~l~~~~g~D~IELN 402 (611)
....+.+.+......++ .....+.+..+.. .-.....+++++|+++ .+++|.+.++.+.+ .+|.||||
T Consensus 150 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~--~aDylelN 223 (409)
T PLN02826 150 VAVAKRLGAQHGKRKLDETSSSSFSSDDVKA----GGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQ--YADYLVIN 223 (409)
T ss_pred HHHHHHHHHHhhhcccccccccccccccccc----cccccCceEEEEeccCCCCcccHHHHHHHHHHHhh--hCCEEEEE
Confidence 23333333211000000 0000000000000 0000123789999888 68999999999864 59999999
Q ss_pred cCCCccceeccccccccccChHHHHHHHHHHHhh---------cCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 403 LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV---------SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 403 ~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~---------~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
.+|| .+. |...++++..+.+++++++++ ..+||.||+-... ..++...+++.+.+.|+++|++
T Consensus 224 iScP---Ntp---glr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl--~~~di~~ia~~a~~~G~dGIi~ 295 (409)
T PLN02826 224 VSSP---NTP---GLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL--SKEDLEDIAAVALALGIDGLII 295 (409)
T ss_pred CCCC---CCC---CcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCC--CHHHHHHHHHHHHHcCCCEEEE
Confidence 9999 442 335567889999999999754 3589999975432 2246788999999999999999
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc----cHHHHHHHHhhCC-
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA----DWDYIEKCAQLCS- 548 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a----~~~~i~~~~k~~~- 548 (611)
.+++..+. .|.. . ...+...|++++++ ..+.++++.+...
T Consensus 296 ~NTt~~r~----~dl~------------------------~-------~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 296 SNTTISRP----DSVL------------------------G-------HPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred EcccCcCc----cchh------------------------c-------ccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 99874321 0000 0 00011123355544 5677788776653
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC-CchHHHHHcc
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK-PWIFQEIKEK 596 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d-P~lf~ei~~g 596 (611)
++||||+|||.|.+|+.+++..| |++|+|+++++.+ |+++.+|.++
T Consensus 341 ~ipIIgvGGI~sg~Da~e~i~AG--As~VQv~Ta~~~~Gp~~i~~I~~e 387 (409)
T PLN02826 341 KIPLVGCGGVSSGEDAYKKIRAG--ASLVQLYTAFAYEGPALIPRIKAE 387 (409)
T ss_pred CCcEEEECCCCCHHHHHHHHHhC--CCeeeecHHHHhcCHHHHHHHHHH
Confidence 69999999999999999999998 9999999999885 9999999875
No 49
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.62 E-value=1.8e-14 Score=153.34 Aligned_cols=249 Identities=17% Similarity=0.234 Sum_probs=149.7
Q ss_pred ccccCeeecCcEEeccCCCCCC------HHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCC
Q psy9514 250 SEKKKIDWQGKLYLSPLTTVGN------LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~~gn------lpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~ 323 (611)
.+.-+.+|+.+++.||||+.+. ...-+.+.+.|..+.++.....-.- .....++..++....+.++++
T Consensus 45 ~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~-~~~~~~~~~vr~~~~~~p~i~----- 118 (333)
T TIGR02151 45 TEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKD-PETADTFEVVREEAPNGPLIA----- 118 (333)
T ss_pred eEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccC-hhhHhHHHHHHHhCCCCcEEe-----
Confidence 3445678999999999998873 3444477888988877654322000 000111112221111222211
Q ss_pred ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEecc
Q psy9514 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNL 403 (611)
Q Consensus 324 ~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~ 403 (611)
|.+|+ |+....++.+.++.+.+ +.|+++||+
T Consensus 119 -----------------------nl~~~----------------------~~~~~~~~~~~~~i~~i----~adal~i~l 149 (333)
T TIGR02151 119 -----------------------NIGAP----------------------QLVEGGPEEAQEAIDMI----EADALAIHL 149 (333)
T ss_pred -----------------------ecCch----------------------hhccccHHHHHHHHHHh----cCCCEEEcC
Confidence 22322 12122345566665555 689999999
Q ss_pred CCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccc
Q psy9514 404 GCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 483 (611)
Q Consensus 404 gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~ 483 (611)
.|++..+...|+.. .+.+.++++.+++.+++||.||.. |. ....+.++.|+++|+|+|+|+|+...
T Consensus 150 n~~q~~~~p~g~~~-----f~~~le~i~~i~~~~~vPVivK~~-g~----g~~~~~a~~L~~aGvd~I~Vsg~gGt---- 215 (333)
T TIGR02151 150 NVLQELVQPEGDRN-----FKGWLEKIAEICSQLSVPVIVKEV-GF----GISKEVAKLLADAGVSAIDVAGAGGT---- 215 (333)
T ss_pred cccccccCCCCCcC-----HHHHHHHHHHHHHhcCCCEEEEec-CC----CCCHHHHHHHHHcCCCEEEECCCCCC----
Confidence 99876555554422 345678899999999999999964 32 13468899999999999999997421
Q ss_pred cCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHH
Q psy9514 484 KQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563 (611)
Q Consensus 484 ~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~ed 563 (611)
+|..|..... .+... ...+.++ +.+....+.++.+...++|||++|||.+++|
T Consensus 216 ---~~~~ie~~r~-~~~~~------~~~~~~~-----------------g~~t~~~l~~~~~~~~~ipVIasGGI~~~~d 268 (333)
T TIGR02151 216 ---SWAQVENYRA-KGSNL------ASFFNDW-----------------GIPTAASLLEVRSDAPDAPIIASGGLRTGLD 268 (333)
T ss_pred ---cccchhhhcc-ccccc------chhhhcc-----------------cHhHHHHHHHHHhcCCCCeEEEECCCCCHHH
Confidence 1221111100 00000 0000000 1111234555544235799999999999999
Q ss_pred HHHHHHcCCCccEEEEcHHhh-----hCCchHHHHHcc
Q psy9514 564 YTESLKKSPSISGVMIGRGAL-----IKPWIFQEIKEK 596 (611)
Q Consensus 564 a~~~l~~G~~aD~VmIGRgaL-----~dP~lf~ei~~g 596 (611)
+.+++..| ||+||+||++| .+|+...+..++
T Consensus 269 i~kaLalG--Ad~V~igr~~L~~~~~~g~~~v~~~i~~ 304 (333)
T TIGR02151 269 VAKAIALG--ADAVGMARPFLKAALDEGEEAVIEEIEL 304 (333)
T ss_pred HHHHHHhC--CCeehhhHHHHHHHHhcCHHHHHHHHHH
Confidence 99999997 99999999999 678755555444
No 50
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=99.61 E-value=6.7e-14 Score=149.94 Aligned_cols=236 Identities=16% Similarity=0.185 Sum_probs=147.7
Q ss_pred cCeeecCcEEeccCCCCCCHHHHH------HHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChh
Q psy9514 253 KKIDWQGKLYLSPLTTVGNLPFRR------LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPY 326 (611)
Q Consensus 253 ~~l~l~nrivlAPMt~~gnlpfRr------l~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~ 326 (611)
-+.+|+-+++.+|||+.+.+.++. .+.+.|..+.++.+-.... +|+
T Consensus 55 ~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~----------------------------~~~ 106 (352)
T PRK05437 55 LGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALK----------------------------DPE 106 (352)
T ss_pred CCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhcc----------------------------Chh
Confidence 355788999999999887766544 6678898888887743210 011
Q ss_pred hHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCC
Q psy9514 327 VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406 (611)
Q Consensus 327 ~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP 406 (611)
.......+.+...-.++-.|.+|+ |..+.+++.+.++.+.+ +.|+++||++||
T Consensus 107 -~~~~~~~vr~~~p~~p~~aNl~~~----------------------~~~~~~~~~~~~~~~~~----~adal~l~l~~~ 159 (352)
T PRK05437 107 -LADSFSVVRKVAPDGLLFANLGAV----------------------QLYGYGVEEAQRAVEMI----EADALQIHLNPL 159 (352)
T ss_pred -hHHHHHHHHHHCCCceEEeecCcc----------------------ccCCCCHHHHHHHHHhc----CCCcEEEeCccc
Confidence 111111122111001111233333 23345567777776665 689999999998
Q ss_pred ccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCc
Q psy9514 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486 (611)
Q Consensus 407 ~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~a 486 (611)
+..+...+. .+.+.+.++++.+++.+++||.||.. |. ....+.++.|.++|+|+|.|+|+...
T Consensus 160 qe~~~p~g~-----~~f~~~le~i~~i~~~~~vPVivK~~-g~----g~s~~~a~~l~~~Gvd~I~Vsg~GGt------- 222 (352)
T PRK05437 160 QELVQPEGD-----RDFRGWLDNIAEIVSALPVPVIVKEV-GF----GISKETAKRLADAGVKAIDVAGAGGT------- 222 (352)
T ss_pred hhhcCCCCc-----ccHHHHHHHHHHHHHhhCCCEEEEeC-CC----CCcHHHHHHHHHcCCCEEEECCCCCC-------
Confidence 664444332 24556778999999999999999976 21 13358889999999999999986311
Q ss_pred ChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHH
Q psy9514 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566 (611)
Q Consensus 487 dw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~ 566 (611)
+|..|......-. .+..... ..+.+....+.++.+...++|||++|||.|+.|+.+
T Consensus 223 ~~~~ie~~R~~~~-------~~~~~~~-----------------~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k 278 (352)
T PRK05437 223 SWAAIENYRARDD-------RLASYFA-----------------DWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAK 278 (352)
T ss_pred Cccchhhhhhhcc-------ccccccc-----------------cccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHH
Confidence 2221111000000 0000000 011123345666555435899999999999999999
Q ss_pred HHHcCCCccEEEEcHHhhhC
Q psy9514 567 SLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 567 ~l~~G~~aD~VmIGRgaL~d 586 (611)
++..| ||+|+|||++|..
T Consensus 279 ~l~~G--Ad~v~ig~~~l~~ 296 (352)
T PRK05437 279 ALALG--ADAVGMAGPFLKA 296 (352)
T ss_pred HHHcC--CCEEEEhHHHHHH
Confidence 99998 9999999999875
No 51
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=99.60 E-value=2.1e-14 Score=146.26 Aligned_cols=190 Identities=18% Similarity=0.307 Sum_probs=132.8
Q ss_pred ChhhHHHHHHHHhhhc--cceeeeccCCCCcchhhccCCCcccccc---ccceeeecccC--chHHHHHHHHHHHHhccc
Q psy9514 324 NPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGN--NPYVLTKCTQLLEEQMVV 396 (611)
Q Consensus 324 ~p~~~~~~a~~l~~~~--~v~~idln~gcp~~~~~~~~~~~~l~~~---~~~~ivQi~g~--~p~~~~~aA~~l~~~~g~ 396 (611)
+|..+++. ..+.+ .+.++||+.. . ..+...+++.+ ...+.+|+.|+ +.+++.++..
T Consensus 33 dp~~~a~~---~~~~g~~~l~ivDLd~~-~-----g~~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~-------- 95 (241)
T PRK14024 33 SPLDAALA---WQRDGAEWIHLVDLDAA-F-----GRGSNRELLAEVVGKLDVKVELSGGIRDDESLEAALA-------- 95 (241)
T ss_pred CHHHHHHH---HHHCCCCEEEEEecccc-C-----CCCccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHH--------
Confidence 56655443 33333 3677888731 1 11112233322 33456788887 7777777633
Q ss_pred ceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCE---EEEEEccccCCchHHHHHHHHHHHcCCCEE
Q psy9514 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPI---TVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 397 D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~Pv---tVKiR~g~~~~~~~a~~la~~l~~aGvd~I 471 (611)
.||. +.+.|++++++|+++.++++.+.+.+ .+|+ .+|++ ||.+......++++.+++.|++.|
T Consensus 96 ------~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~-Gw~~~~~~~~~~~~~l~~~G~~~i 163 (241)
T PRK14024 96 ------TGCA-----RVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAAR-GWTRDGGDLWEVLERLDSAGCSRY 163 (241)
T ss_pred ------CCCC-----EEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccC-CeeecCccHHHHHHHHHhcCCCEE
Confidence 3333 45689999999999999999987654 3344 45543 666544566788888888888888
Q ss_pred EEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCc
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iP 551 (611)
++|++++.+. +.++ +|+.+.++.+. .++|
T Consensus 164 iv~~~~~~g~-------------------------------------------------~~G~-d~~~i~~i~~~-~~ip 192 (241)
T PRK14024 164 VVTDVTKDGT-------------------------------------------------LTGP-NLELLREVCAR-TDAP 192 (241)
T ss_pred EEEeecCCCC-------------------------------------------------ccCC-CHHHHHHHHhh-CCCC
Confidence 8887776655 6664 88999888765 5899
Q ss_pred EEEecCCCCHHHHHHHHH--cCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 552 LYGNGDILSYEDYTESLK--KSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 552 VIgnGgI~s~eda~~~l~--~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
||+||||.|++|+.++.. .. +||+|||||+++.++--+++++
T Consensus 193 viasGGi~s~~D~~~l~~~~~~-GvdgV~igra~~~g~~~~~~~~ 236 (241)
T PRK14024 193 VVASGGVSSLDDLRALAELVPL-GVEGAIVGKALYAGAFTLPEAL 236 (241)
T ss_pred EEEeCCCCCHHHHHHHhhhccC-CccEEEEeHHHHcCCCCHHHHH
Confidence 999999999999999864 22 4999999999999998777764
No 52
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=99.58 E-value=1.2e-14 Score=148.67 Aligned_cols=169 Identities=20% Similarity=0.244 Sum_probs=126.3
Q ss_pred HhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEE
Q psy9514 392 EQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 392 ~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~I 471 (611)
+.+|++.|.+|.+||++.+ ..| |.+++++|+.+. +|++.+++||++|+|.|. ..-++.|+++|+|.|
T Consensus 34 e~~g~~~v~~~~~~psd~~-~~g-g~~Rm~~p~~I~----aIk~~V~iPVigk~Righ-------~~Ea~~L~~~GvDiI 100 (293)
T PRK04180 34 EEAGAVAVMALERVPADIR-AAG-GVARMADPKMIE----EIMDAVSIPVMAKARIGH-------FVEAQILEALGVDYI 100 (293)
T ss_pred HHhChHHHHHccCCCchHh-hcC-CeeecCCHHHHH----HHHHhCCCCeEEeehhhH-------HHHHHHHHHcCCCEE
Confidence 3569999999999999854 444 999999999875 777778999999999885 455788999999999
Q ss_pred EEEccccccccccCcChhHHHHHhhhcccCch-h------hhhcchhhHhcCCceE--E---------------------
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNN-I------IHNFMPKFRDWGASLI--T--------------------- 521 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~-~------~~~~~~~l~~~G~~~i--t--------------------- 521 (611)
.-+.|.+. ++ + +...+++... . ...-+-...+.|+++| |
T Consensus 101 D~Te~lrp------ad-~----~~~~~K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~ 169 (293)
T PRK04180 101 DESEVLTP------AD-E----EYHIDKWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGE 169 (293)
T ss_pred eccCCCCc------hH-H----HHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHH
Confidence 65555433 22 1 1222222211 0 0111223445799999 7
Q ss_pred ---ecccccccccc----CCccHHHHHHHHhhCCCCcEE--EecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 522 ---LHGRTREQRYT----KQADWDYIEKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 522 ---ihgrtr~g~~~----~~a~~~~i~~~~k~~~~iPVI--gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
+.|+|.+..+. -.++|+.+.++.+. .++||| +.|||.|++++..+++.| ||+|+||++++..+
T Consensus 170 i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~G--AdgVaVGSaI~ks~ 241 (293)
T PRK04180 170 IRRLTSMSEDELYTAAKELQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLG--ADGVFVGSGIFKSG 241 (293)
T ss_pred HHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhC--CCEEEEcHHhhcCC
Confidence 78888876433 45789999998876 479998 999999999999999987 99999999998433
No 53
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.58 E-value=4.3e-14 Score=151.67 Aligned_cols=158 Identities=11% Similarity=0.099 Sum_probs=113.5
Q ss_pred cChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCc-ChhHHHHHhhhcc
Q psy9514 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA-DWDYIEKCAQLCS 499 (611)
Q Consensus 421 ~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~a-dw~~i~~~~~~~~ 499 (611)
-+|+++.++++++++. + ++|++|++ ...+.++++.+.++|+++|++|+|++.|.|...+ +|..+.++.....
T Consensus 115 ~~p~l~~~iv~~~~~~-~--V~v~vr~~----~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ 187 (368)
T PRK08649 115 IKPELITERIAEIRDA-G--VIVAVSLS----PQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELD 187 (368)
T ss_pred CCHHHHHHHHHHHHhC-e--EEEEEecC----CcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCC
Confidence 3588899999999985 3 66777763 2456799999999999999999999999998887 7987766654321
Q ss_pred c----CchhhhhcchhhHhcCCceEEeccccccc----c-cc--CCccHHHHHHHHhhC---------CCCcEEEecCCC
Q psy9514 500 R----DNNIIHNFMPKFRDWGASLITLHGRTREQ----R-YT--KQADWDYIEKCAQLC---------SPAPLYGNGDIL 559 (611)
Q Consensus 500 ~----~~~~~~~~~~~l~~~G~~~itihgrtr~g----~-~~--~~a~~~~i~~~~k~~---------~~iPVIgnGgI~ 559 (611)
- .+-...+.+..+.++|++.|.+ |+..-. + .. +.+-+..+.+++... .++|||+.|||.
T Consensus 188 ipVIaG~V~t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~ 266 (368)
T PRK08649 188 VPVIVGGCVTYTTALHLMRTGAAGVLV-GIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG 266 (368)
T ss_pred CCEEEeCCCCHHHHHHHHHcCCCEEEE-CCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC
Confidence 1 1122334455677799999977 443210 1 11 123344455554311 159999999999
Q ss_pred CHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 560 SYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 560 s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
+..|+.+++..| +|+||+|+.++.-.+
T Consensus 267 ~~~diakAlalG--Ad~Vm~Gs~fa~t~E 293 (368)
T PRK08649 267 TSGDIAKAIACG--ADAVMLGSPLARAAE 293 (368)
T ss_pred CHHHHHHHHHcC--CCeecccchhccccc
Confidence 999999999998 999999998877444
No 54
>KOG0134|consensus
Probab=99.54 E-value=1.5e-14 Score=153.36 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=128.6
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCC---------CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEE
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGC---------PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKT 445 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gC---------P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKi 445 (611)
..-.+.+..||..+. .+|||+||||..+ |..|-+++.||+++++|.+++.+|+.+|++.++ ..+.+.+
T Consensus 170 ~~V~Drfv~Aak~~~-e~GFDGVEIHgAhGYLl~QFlsp~~NdRtDeYGGSieNR~Rf~lEv~daVr~~Ip~s~~~l~~~ 248 (400)
T KOG0134|consen 170 TEVVDRFVYAAKAAY-ECGFDGVEIHGAHGYLLDQFLSPTTNDRTDEYGGSIENRCRFPLEVVDAVRKEIPASRVFLRGS 248 (400)
T ss_pred HHHHHHHHHHHHHHH-hcCCCeEEEecccchhhhhhccCCCCCcccccCcchhhhhhhhHHHHHHHHHhhccccceEEec
Confidence 334466777777764 4799999999988 888999999999999999999999999999885 3343333
Q ss_pred Ecc----ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 446 RTG----IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 446 R~g----~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
+.+ .....+++..++..++..|.+.+-+.|++...- .. .
T Consensus 249 ~~~~fq~~~~t~d~~~~~~~~y~~~g~df~~l~~g~~~~~-------------~h------------------------~ 291 (400)
T KOG0134|consen 249 PTNEFQDIGITIDDAIKMCGLYEDGGLDFVELTGGTFLAY-------------VH------------------------F 291 (400)
T ss_pred CchhhhhccccccchHHHHHHHHhcccchhhccCchhhhh-------------hh------------------------h
Confidence 322 112335677888899999999777777664321 00 0
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEE-EecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcccCCC
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLY-GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVI-gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~~~d 600 (611)
+|.|-.. -...+....+++-.+...+.+|| ++|+..+.+.+.++++.+ ..|+|..||..+.+|+|+.+++.+..+.
T Consensus 292 i~~R~~~--~~~~~~~~~f~e~~r~~~kgt~v~a~g~~~t~~~~~eav~~~-~T~~ig~GR~f~anPDLp~rl~~~~~~n 368 (400)
T KOG0134|consen 292 IEPRQST--IAREAFFVEFAETIRPVFKGTVVYAGGGGRTREAMVEAVKSG-RTDLIGYGRPFLANPDLPKRLLNGLPLN 368 (400)
T ss_pred ccccccc--cccccchhhhhhHHHHHhcCcEEEecCCccCHHHHHHHHhcC-CceeEEecchhccCCchhHHHHhCCCcc
Confidence 0111000 00111112222222323355555 788999999999999998 8999999999999999999999987654
Q ss_pred c
Q psy9514 601 I 601 (611)
Q Consensus 601 i 601 (611)
.
T Consensus 369 ~ 369 (400)
T KOG0134|consen 369 K 369 (400)
T ss_pred c
Confidence 3
No 55
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=99.50 E-value=1.9e-12 Score=137.58 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=105.9
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a 456 (611)
+.+++.+.++.+.+ +.|++|||++||+......+. .+.+.+.+.++.+++.+++||.+|..- . ...
T Consensus 126 ~~~~~~~~~~i~~~----~adalel~l~~~q~~~~~~~~-----~df~~~~~~i~~l~~~~~vPVivK~~g-~----g~s 191 (326)
T cd02811 126 GYGVEEARRAVEMI----EADALAIHLNPLQEAVQPEGD-----RDFRGWLERIEELVKALSVPVIVKEVG-F----GIS 191 (326)
T ss_pred CCCHHHHHHHHHhc----CCCcEEEeCcchHhhcCCCCC-----cCHHHHHHHHHHHHHhcCCCEEEEecC-C----CCC
Confidence 45667777776665 689999999998654433332 234556788899999889999999642 1 123
Q ss_pred HHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCcc
Q psy9514 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~ 536 (611)
.+.++.|+++|+|+|.|+|+-.. .|..|........ .. .....+. ..+.+-
T Consensus 192 ~~~a~~l~~~Gvd~I~vsG~GGt-------~~~~ie~~r~~~~--~~---~~~~~~~-----------------~~g~~t 242 (326)
T cd02811 192 RETAKRLADAGVKAIDVAGAGGT-------SWARVENYRAKDS--DQ---RLAEYFA-----------------DWGIPT 242 (326)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC-------ccccccccccccc--cc---ccccccc-----------------cccccH
Confidence 57889999999999999985211 1110000000000 00 0000000 001112
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
...+.++.+...++|||++|||.+..|+.+++..| ||+|+|||++|.-
T Consensus 243 ~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lG--Ad~V~i~~~~L~~ 290 (326)
T cd02811 243 AASLLEVRSALPDLPLIASGGIRNGLDIAKALALG--ADLVGMAGPFLKA 290 (326)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhC--CCEEEEcHHHHHH
Confidence 34556655544489999999999999999999998 9999999987753
No 56
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=99.26 E-value=4.4e-10 Score=108.07 Aligned_cols=139 Identities=18% Similarity=0.111 Sum_probs=93.8
Q ss_pred eeeecccCchHHHHHH-HHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEcc
Q psy9514 371 FGVQLCGNNPYVLTKC-TQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTG 448 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~a-A~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g 448 (611)
+++|+..+++..+... |..+ ...|+|+|+||.+||.. ++++.++++.+++.. +.|+.++++..
T Consensus 60 ~~~~~~~~~~~~~~~~~a~~~-~~~g~d~v~l~~~~~~~--------------~~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 60 LGVQLAINDAAAAVDIAAAAA-RAAGADGVEIHGAVGYL--------------AREDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred EEEEEccCCchhhhhHHHHHH-HHcCCCEEEEeccCCcH--------------HHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3445544444433321 2222 24599999999999942 788899999999988 78999998754
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
... ..+ .+.+.|++.|.++++...+....
T Consensus 125 ~~~--~~~-----~~~~~g~d~i~~~~~~~~~~~~~-------------------------------------------- 153 (200)
T cd04722 125 GEL--AAA-----AAEEAGVDEVGLGNGGGGGGGRD-------------------------------------------- 153 (200)
T ss_pred Ccc--chh-----hHHHcCCCEEEEcCCcCCCCCcc--------------------------------------------
Confidence 321 111 17888999999998864432100
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.. ......+..+. ...++||+++|||.+++++.++++.| +|+|++||
T Consensus 154 --~~-~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 154 --AV-PIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred --Cc-hhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 00 00112233333 34689999999999999999999987 99999996
No 57
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=99.24 E-value=1.2e-10 Score=112.80 Aligned_cols=151 Identities=18% Similarity=0.253 Sum_probs=102.9
Q ss_pred HHHHHHHhhcCCCEEEEEEccccC---CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHK---DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI 504 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~---~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~ 504 (611)
+=|+++++.+++||+.-+.....+ ....+.+-++.|.++|++.|.+.++.|... ..+.++..-+++....
T Consensus 22 ~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-------~~l~~li~~i~~~~~l 94 (192)
T PF04131_consen 22 EDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-------ETLEELIREIKEKYQL 94 (192)
T ss_dssp HHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-------S-HHHHHHHHHHCTSE
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-------cCHHHHHHHHHHhCcE
Confidence 345789999999999887654333 224577889999999999999999765432 2233444444443311
Q ss_pred ------hhhcchhhHhcCCceE--EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccE
Q psy9514 505 ------IHNFMPKFRDWGASLI--TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISG 576 (611)
Q Consensus 505 ------~~~~~~~l~~~G~~~i--tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~ 576 (611)
+.+-.....++|++.| |+.|||.+... ..+||++++++++. ++|||+.|+|+||+++.++++.| +++
T Consensus 95 ~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~-~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~G--A~a 169 (192)
T PF04131_consen 95 VMADISTLEEAINAAELGFDIIGTTLSGYTPYTKG-DGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELG--AHA 169 (192)
T ss_dssp EEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTT-SSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT---SE
T ss_pred EeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCC-CCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcC--CeE
Confidence 1223346778999999 89999998766 77899999999874 89999999999999999999998 999
Q ss_pred EEEcHHhhhCCchHH
Q psy9514 577 VMIGRGALIKPWIFQ 591 (611)
Q Consensus 577 VmIGRgaL~dP~lf~ 591 (611)
|.|| +++..|++..
T Consensus 170 VVVG-sAITrP~~It 183 (192)
T PF04131_consen 170 VVVG-SAITRPQEIT 183 (192)
T ss_dssp EEE--HHHH-HHHHH
T ss_pred EEEC-cccCCHHHHH
Confidence 9999 7888997544
No 58
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.23 E-value=6.9e-10 Score=117.96 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=124.5
Q ss_pred CeeecCcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHH
Q psy9514 254 KIDWQGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCT 332 (611)
Q Consensus 254 ~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a 332 (611)
.+.++-+++.|||.++++..+...+.+.|. +++..+|.. +.+ ..+...++ +...
T Consensus 30 ~~~l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~~~~-~~~----~~~i~~vk----~~l~---------------- 84 (325)
T cd00381 30 NITLNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRNMSI-EEQ----AEEVRKVK----GRLL---------------- 84 (325)
T ss_pred ccccCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-HHH----HHHHHHhc----cCce----------------
Confidence 478889999999999999999886666664 887776532 111 00000000 0000
Q ss_pred HHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceec
Q psy9514 333 QLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYK 412 (611)
Q Consensus 333 ~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~ 412 (611)
+.+..+..++....+...++ .|+|.|+|++++.
T Consensus 85 ---------------------------------------v~~~~~~~~~~~~~~~~l~e--agv~~I~vd~~~G------ 117 (325)
T cd00381 85 ---------------------------------------VGAAVGTREDDKERAEALVE--AGVDVIVIDSAHG------ 117 (325)
T ss_pred ---------------------------------------EEEecCCChhHHHHHHHHHh--cCCCEEEEECCCC------
Confidence 01111222333333333332 5899999987553
Q ss_pred cccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHH
Q psy9514 413 QGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491 (611)
Q Consensus 413 ~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i 491 (611)
++..+.++++.+++... +||.+ |.- .+.+.++.+.++|+|+|.|+++....
T Consensus 118 ---------~~~~~~~~i~~ik~~~p~v~Vi~----G~v----~t~~~A~~l~~aGaD~I~vg~g~G~~----------- 169 (325)
T cd00381 118 ---------HSVYVIEMIKFIKKKYPNVDVIA----GNV----VTAEAARDLIDAGADGVKVGIGPGSI----------- 169 (325)
T ss_pred ---------CcHHHHHHHHHHHHHCCCceEEE----CCC----CCHHHHHHHHhcCCCEEEECCCCCcC-----------
Confidence 12446778888887653 34433 322 23466788889999999986543110
Q ss_pred HHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHH
Q psy9514 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC--SPAPLYGNGDILSYEDYTESLK 569 (611)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~ 569 (611)
.+++.....+.+.|..+..+.+.. .++|||++|||.++.|+.+++.
T Consensus 170 --------------------------------~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla 217 (325)
T cd00381 170 --------------------------------CTTRIVTGVGVPQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALA 217 (325)
T ss_pred --------------------------------cccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHH
Confidence 011111133445666666665433 2699999999999999999999
Q ss_pred cCCCccEEEEcHHhhhCCc
Q psy9514 570 KSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 570 ~G~~aD~VmIGRgaL~dP~ 588 (611)
.| +|+||||+.++.-.+
T Consensus 218 ~G--A~~VmiGt~fa~t~E 234 (325)
T cd00381 218 AG--ADAVMLGSLLAGTDE 234 (325)
T ss_pred cC--CCEEEecchhccccc
Confidence 87 999999999887543
No 59
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=99.21 E-value=8.6e-11 Score=118.58 Aligned_cols=118 Identities=15% Similarity=0.287 Sum_probs=83.9
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEc------cccC-CchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRT------GIHK-DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~------g~~~-~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
.|++++.++.++.++++.+...+ .+++.+|. |+.+ ......++++.+++.|++.|.+|
T Consensus 102 lg~~~l~~~~~l~ei~~~~~~~i--~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~------------- 166 (233)
T PRK00748 102 IGTAAVKNPELVKEACKKFPGKI--VVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYT------------- 166 (233)
T ss_pred ECchHHhCHHHHHHHHHHhCCCc--eeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEe-------------
Confidence 68899999999999999885543 33443331 1111 11223445555555555555555
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~ 567 (611)
++++++.+.+ ++|+.+.++.+. .++|||++|||.|++|+.++
T Consensus 167 ------------------------------------~~~~~g~~~G-~d~~~i~~l~~~-~~ipvia~GGi~~~~di~~~ 208 (233)
T PRK00748 167 ------------------------------------DISRDGTLSG-PNVEATRELAAA-VPIPVIASGGVSSLDDIKAL 208 (233)
T ss_pred ------------------------------------eecCcCCcCC-CCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHH
Confidence 4445555666 789999998775 47999999999999999999
Q ss_pred HHcCCCccEEEEcHHhhhC
Q psy9514 568 LKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 568 l~~G~~aD~VmIGRgaL~d 586 (611)
++.| +||+|||||+++..
T Consensus 209 ~~~g-~~~gv~vg~a~~~~ 226 (233)
T PRK00748 209 KGLG-AVEGVIVGRALYEG 226 (233)
T ss_pred HHcC-CccEEEEEHHHHcC
Confidence 9987 79999999999875
No 60
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.19 E-value=1.1e-09 Score=110.56 Aligned_cols=191 Identities=14% Similarity=0.149 Sum_probs=117.6
Q ss_pred cCcEEeccCCCCCCHHHHHHHHHcCC-CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHh
Q psy9514 258 QGKLYLSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336 (611)
Q Consensus 258 ~nrivlAPMt~~gnlpfRrl~~~~Ga-~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~ 336 (611)
.+++++|||++.++..++..+.++|+ +++-++++....+... ...++.+ .+.++++++
T Consensus 2 ~~pi~~a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~~~~~~----~~~i~~~-~~~~~~v~~---------------- 60 (236)
T cd04730 2 RYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAE----IRKIRAL-TDKPFGVNL---------------- 60 (236)
T ss_pred CCCEECCCCCCCCCHHHHHHHHhCCCccccCCCCCCHHHHHHH----HHHHHHh-cCCCeEEeE----------------
Confidence 47899999999999999999999986 7776666643322110 0011100 012233333
Q ss_pred hhccceeeeccCCCCcchhhccCCCccccccccceeeecccCch-HHHHHHHHHHHHhcccceEEeccCCCccceecccc
Q psy9514 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNP-YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS 415 (611)
Q Consensus 337 ~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p-~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~ 415 (611)
+.+++ ....+.++.+. ..|+|+|.|+.+++
T Consensus 61 ---------------------------------------i~~~~~~~~~~~~~~~~-~~g~d~v~l~~~~~--------- 91 (236)
T cd04730 61 ---------------------------------------LVPSSNPDFEALLEVAL-EEGVPVVSFSFGPP--------- 91 (236)
T ss_pred ---------------------------------------ecCCCCcCHHHHHHHHH-hCCCCEEEEcCCCC---------
Confidence 33321 11222222221 24888888876643
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHh
Q psy9514 416 GSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA 495 (611)
Q Consensus 416 GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~ 495 (611)
.++++.++. .++++.+++. . .+.++.+.+.|+++|.++++.. .....
T Consensus 92 -----------~~~~~~~~~-~~i~~i~~v~-----~----~~~~~~~~~~gad~i~~~~~~~-~G~~~----------- 138 (236)
T cd04730 92 -----------AEVVERLKA-AGIKVIPTVT-----S----VEEARKAEAAGADALVAQGAEA-GGHRG----------- 138 (236)
T ss_pred -----------HHHHHHHHH-cCCEEEEeCC-----C----HHHHHHHHHcCCCEEEEeCcCC-CCCCC-----------
Confidence 223344443 3566666532 1 2445667789999999988631 11000
Q ss_pred hhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCcc
Q psy9514 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575 (611)
Q Consensus 496 ~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD 575 (611)
......+++++++.+. .++||++.|||.+++++.+++..| +|
T Consensus 139 -----------------------------------~~~~~~~~~i~~i~~~-~~~Pvi~~GGI~~~~~v~~~l~~G--ad 180 (236)
T cd04730 139 -----------------------------------TFDIGTFALVPEVRDA-VDIPVIAAGGIADGRGIAAALALG--AD 180 (236)
T ss_pred -----------------------------------ccccCHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcC--Cc
Confidence 0112346777777654 479999999999999999999976 99
Q ss_pred EEEEcHHhhhCCch
Q psy9514 576 GVMIGRGALIKPWI 589 (611)
Q Consensus 576 ~VmIGRgaL~dP~l 589 (611)
+|+||++++..+..
T Consensus 181 gV~vgS~l~~~~e~ 194 (236)
T cd04730 181 GVQMGTRFLATEES 194 (236)
T ss_pred EEEEchhhhcCccc
Confidence 99999999987754
No 61
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.17 E-value=4.2e-10 Score=115.89 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=98.7
Q ss_pred eeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+.+|+.|. +.+++.++ + ..|++.|.|| ++++.+|.++.++++.+... .+++++++|.|
T Consensus 75 ~pv~~gGGi~s~~d~~~l---~--~~G~~~vvig--------------s~~~~~~~~~~~~~~~~~~~-~i~vsiD~k~g 134 (258)
T PRK01033 75 MPLCYGGGIKTLEQAKKI---F--SLGVEKVSIN--------------TAALEDPDLITEAAERFGSQ-SVVVSIDVKKN 134 (258)
T ss_pred CCEEECCCCCCHHHHHHH---H--HCCCCEEEEC--------------hHHhcCHHHHHHHHHHhCCC-cEEEEEEEecC
Confidence 33455554 44444333 3 2378888776 57788999999999888422 26788888765
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
... .-.+.++|+.... .....+++..+.+.|++.+++|+++++
T Consensus 135 ~~~----------------~~~v~~~gw~~~~---------------------~~~~~e~~~~~~~~g~~~ii~~~i~~~ 177 (258)
T PRK01033 135 LGG----------------KFDVYTHNGTKKL---------------------KKDPLELAKEYEALGAGEILLNSIDRD 177 (258)
T ss_pred CCC----------------cEEEEEcCCeecC---------------------CCCHHHHHHHHHHcCCCEEEEEccCCC
Confidence 100 0012222221100 011122333344444445555555555
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
|.+.+ .+|+.+.++.+. .++|||++|||.|.+|+.++++.. +||+|++|+++.-.
T Consensus 178 G~~~G-~d~~~i~~~~~~-~~ipvIasGGv~s~eD~~~l~~~~-GvdgVivg~a~~~~ 232 (258)
T PRK01033 178 GTMKG-YDLELLKSFRNA-LKIPLIALGGAGSLDDIVEAILNL-GADAAAAGSLFVFK 232 (258)
T ss_pred CCcCC-CCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHHC-CCCEEEEcceeeeC
Confidence 55766 599999998765 689999999999999999999433 49999999998877
No 62
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.9e-09 Score=104.94 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=114.9
Q ss_pred HHHHHHhhcCCCEEEEEEccccCCc---hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh
Q psy9514 429 VITCMNEVSSLPITVKTRTGIHKDN---NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505 (611)
Q Consensus 429 Iv~av~~~~~~PvtVKiR~g~~~~~---~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~ 505 (611)
=+++++.++++||+.-+.-.+.+.. ..+.+-++.|.++|++.|.+.++.|... +- .+.++...++..+...
T Consensus 57 dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP-----~~-~~~~~i~~~k~~~~l~ 130 (229)
T COG3010 57 DIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRP-----DG-DLEELIARIKYPGQLA 130 (229)
T ss_pred hHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCC-----cc-hHHHHHHHhhcCCcEE
Confidence 3567999999999988877665532 4577889999999999999999876532 11 3444444433322221
Q ss_pred ------hhcchhhHhcCCceE--EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEE
Q psy9514 506 ------HNFMPKFRDWGASLI--TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577 (611)
Q Consensus 506 ------~~~~~~l~~~G~~~i--tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~V 577 (611)
.+-.-....+|++.| |++|||.+......+|+..++++.+ .+++||+.|+++||+.+.+.++.| |++|
T Consensus 131 MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~G--a~aV 206 (229)
T COG3010 131 MADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIG--ADAV 206 (229)
T ss_pred EeccCCHHHHHHHHHcCCcEEecccccccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhC--CeEE
Confidence 122234567899999 9999999776667789999999887 489999999999999999999998 9999
Q ss_pred EEcHHhhhCCc
Q psy9514 578 MIGRGALIKPW 588 (611)
Q Consensus 578 mIGRgaL~dP~ 588 (611)
.|| +++.+|.
T Consensus 207 vVG-sAITRp~ 216 (229)
T COG3010 207 VVG-SAITRPE 216 (229)
T ss_pred EEC-cccCCHH
Confidence 999 8899994
No 63
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=99.13 E-value=4.4e-10 Score=113.40 Aligned_cols=150 Identities=13% Similarity=0.276 Sum_probs=102.6
Q ss_pred eeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEc-
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT- 447 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~- 447 (611)
+.+|+.|. +++++.++.+ .|+|.| -.|+.++.+|.++.++++.+... .+-+++.+|.
T Consensus 74 ~pv~~~GgI~~~e~~~~~~~-----~Gad~v--------------vigs~~l~dp~~~~~i~~~~g~~-~i~~sid~~~~ 133 (234)
T cd04732 74 IPVQVGGGIRSLEDIERLLD-----LGVSRV--------------IIGTAAVKNPELVKELLKEYGGE-RIVVGLDAKDG 133 (234)
T ss_pred CCEEEeCCcCCHHHHHHHHH-----cCCCEE--------------EECchHHhChHHHHHHHHHcCCc-eEEEEEEeeCC
Confidence 44566555 6666665543 255554 25788889999999888876431 1122333332
Q ss_pred -----ccc-CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 448 -----GIH-KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 448 -----g~~-~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
++. .......++++.+++.|++.|++|.+++.+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~---------------------------------------- 173 (234)
T cd04732 134 KVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGT---------------------------------------- 173 (234)
T ss_pred EEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCc----------------------------------------
Confidence 221 1122455677777777777777776654432
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
+.+ ++|+.+.++.+. .++||+++|||.|++|+.+++..| +|+|||||+++.++--+.++
T Consensus 174 ---------~~g-~~~~~i~~i~~~-~~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~~~~~~~~~~~~~ 232 (234)
T cd04732 174 ---------LSG-PNFELYKELAAA-TGIPVIASGGVSSLDDIKALKELG--VAGVIVGKALYEGKITLEEA 232 (234)
T ss_pred ---------cCC-CCHHHHHHHHHh-cCCCEEEecCCCCHHHHHHHHHCC--CCEEEEeHHHHcCCCCHHHH
Confidence 444 788888888765 489999999999999999999976 99999999999998655543
No 64
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=99.11 E-value=1.1e-09 Score=111.49 Aligned_cols=144 Identities=14% Similarity=0.185 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHh-hcCCCEE----------EEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VSSLPIT----------VKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~-~~~~Pvt----------VKiR~ 447 (611)
+.+++.++.+ .|+++|-+ |+.++.+|.++.++++.+.. .+-+++. |++|.
T Consensus 82 s~~d~~~~l~-----~G~~~v~i--------------g~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~ 142 (243)
T cd04731 82 SLEDARRLLR-----AGADKVSI--------------NSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG 142 (243)
T ss_pred CHHHHHHHHH-----cCCceEEE--------------CchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC
Confidence 5555555532 26666655 46777899999999998853 2333444 44444
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccc
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR 527 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr 527 (611)
+.......+.++++.+.+.|++.|.+|++++...
T Consensus 143 ~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~---------------------------------------------- 176 (243)
T cd04731 143 GRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT---------------------------------------------- 176 (243)
T ss_pred CceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC----------------------------------------------
Confidence 4444455677888889999999999988764321
Q ss_pred cccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 528 ~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
. ...+|+++.++.+. .++|||++|||+|++|+.++++.+ +||+||+||+++..=.-+.++
T Consensus 177 ---~-~g~~~~~i~~i~~~-~~~pvia~GGi~~~~di~~~l~~~-g~dgv~vg~al~~~~~~~~~~ 236 (243)
T cd04731 177 ---K-KGYDLELIRAVSSA-VNIPVIASGGAGKPEHFVEAFEEG-GADAALAASIFHFGEYTIAEL 236 (243)
T ss_pred ---C-CCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHhC-CCCEEEEeHHHHcCCCCHHHH
Confidence 1 23478888887665 589999999999999999999985 599999999988754444444
No 65
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=99.09 E-value=1.1e-09 Score=111.12 Aligned_cols=153 Identities=16% Similarity=0.232 Sum_probs=103.8
Q ss_pred eeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHh-hcCCCEEEE---
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VSSLPITVK--- 444 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~-~~~~PvtVK--- 444 (611)
+.+|+.|+ +.+++..+.. +|++.|-| |+.++.+|+++.++++.+.. .+-+.+.++
T Consensus 77 ~~l~v~GGi~~~~~~~~~~~-----~Ga~~v~i--------------Gs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~ 137 (241)
T PRK13585 77 VPVQLGGGIRSAEDAASLLD-----LGVDRVIL--------------GTAAVENPEIVRELSEEFGSERVMVSLDAKDGE 137 (241)
T ss_pred CcEEEcCCcCCHHHHHHHHH-----cCCCEEEE--------------ChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCE
Confidence 34455444 5566655543 36666533 77788899998888887632 110111111
Q ss_pred EE-ccccCCch-HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEe
Q psy9514 445 TR-TGIHKDNN-IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 445 iR-~g~~~~~~-~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~iti 522 (611)
+. -|+.+... ...++++.+.+.|++.|++|++.+.
T Consensus 138 v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~------------------------------------------- 174 (241)
T PRK13585 138 VVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVE------------------------------------------- 174 (241)
T ss_pred EEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCC-------------------------------------------
Confidence 11 13333222 4567777777788888777776533
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+.+ ...+|+.++++++.. ++||+++|||.|++|+.+++..| +++||+|++++.+|..+.++..
T Consensus 175 ------g~~-~g~~~~~i~~i~~~~-~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~~~~~~~~~~ 237 (241)
T PRK13585 175 ------GLL-EGVNTEPVKELVDSV-DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKGKFTLEEAIE 237 (241)
T ss_pred ------CCc-CCCCHHHHHHHHHhC-CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcCCcCHHHHHH
Confidence 223 346888888887764 89999999999999999987776 9999999999999998888653
No 66
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=99.07 E-value=1.5e-09 Score=111.57 Aligned_cols=152 Identities=11% Similarity=0.137 Sum_probs=111.7
Q ss_pred eeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHH-hh--cCC-----C
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN-EV--SSL-----P 440 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~-~~--~~~-----P 440 (611)
+.+++.|+ +.+++.++... |++.| ..|+.++.+|.++.++.+... +. +.+ +
T Consensus 75 ~pv~~~GGi~s~~d~~~~~~~-----Ga~~v--------------ivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~ 135 (254)
T TIGR00735 75 IPLTVGGGIKSIEDVDKLLRA-----GADKV--------------SINTAAVKNPELIYELADRFGSQCIVVAIDAKRVY 135 (254)
T ss_pred CCEEEECCCCCHHHHHHHHHc-----CCCEE--------------EEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 34555555 67777776432 33333 347888899999999988773 21 122 2
Q ss_pred E------EEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHh
Q psy9514 441 I------TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRD 514 (611)
Q Consensus 441 v------tVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~ 514 (611)
+ -||+|.+..........+++.+++.|++.|.+|++.+..
T Consensus 136 ~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g---------------------------------- 181 (254)
T TIGR00735 136 VNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDG---------------------------------- 181 (254)
T ss_pred CCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCccc----------------------------------
Confidence 2 578887766555677889999999999999998876431
Q ss_pred cCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 515 ~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
+.+.++|+++.++.+. .++|||++|||.|++|+.+++..| +||+||+|++++..=--+.++
T Consensus 182 ----------------~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g-~~dgv~~g~a~~~~~~~~~~~ 242 (254)
T TIGR00735 182 ----------------TKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKG-KADAALAASVFHYREITIGEV 242 (254)
T ss_pred ----------------CCCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcC-CcceeeEhHHHhCCCCCHHHH
Confidence 3455788888888765 589999999999999999999987 899999999987653334444
No 67
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=99.05 E-value=2.6e-09 Score=108.07 Aligned_cols=115 Identities=13% Similarity=0.194 Sum_probs=82.0
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCEEEEEEccc-------------cCCchHHHHHHHHHHHcCCCEEEEEcccccccc
Q psy9514 416 GSGLLQRANILQSVITCMNEVSSLPITVKTRTGI-------------HKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482 (611)
Q Consensus 416 GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~-------------~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~ 482 (611)
|+.++.+|+++.++++...... +++++.+|.+. ......+.++++.++++|++.|.+|++++.
T Consensus 103 g~~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~--- 178 (232)
T TIGR03572 103 NTAALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRD--- 178 (232)
T ss_pred ChhHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCcc---
Confidence 4678899999999988763321 45777776541 011223456777777777777777775543
Q ss_pred ccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHH
Q psy9514 483 TKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562 (611)
Q Consensus 483 ~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~e 562 (611)
+.+.+ .+|+.+.++.+. .++|||++|||.|++
T Consensus 179 ----------------------------------------------g~~~g-~~~~~~~~i~~~-~~ipvia~GGi~s~~ 210 (232)
T TIGR03572 179 ----------------------------------------------GTMKG-YDLELIKTVSDA-VSIPVIALGGAGSLD 210 (232)
T ss_pred ----------------------------------------------CCcCC-CCHHHHHHHHhh-CCCCEEEECCCCCHH
Confidence 22333 578888888765 589999999999999
Q ss_pred HHHHHHHcCCCccEEEEcHHh
Q psy9514 563 DYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 563 da~~~l~~G~~aD~VmIGRga 583 (611)
|+.+++... +||+||||+++
T Consensus 211 di~~~l~~~-gadgV~vg~a~ 230 (232)
T TIGR03572 211 DLVEVALEA-GASAVAAASLF 230 (232)
T ss_pred HHHHHHHHc-CCCEEEEehhh
Confidence 999966554 59999999875
No 68
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=99.01 E-value=4.1e-09 Score=108.12 Aligned_cols=150 Identities=12% Similarity=0.119 Sum_probs=107.0
Q ss_pred eecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHH-----hhcC-------
Q psy9514 373 VQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN-----EVSS------- 438 (611)
Q Consensus 373 vQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~-----~~~~------- 438 (611)
+++.|+ +.+++.++.. .|++.|- .|+.++.+|.++.++.+.+. ..++
T Consensus 77 v~~~GGi~s~~~~~~~l~-----~Ga~~Vi--------------igt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~ 137 (253)
T PRK02083 77 LTVGGGIRSVEDARRLLR-----AGADKVS--------------INSAAVANPELISEAADRFGSQCIVVAIDAKRDPEP 137 (253)
T ss_pred EEeeCCCCCHHHHHHHHH-----cCCCEEE--------------EChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 444444 6666666643 2455543 36778889999999999873 1223
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.|+.|++|.+.........++++.+.+.|++.|.+|...+...
T Consensus 138 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~------------------------------------- 180 (253)
T PRK02083 138 GRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT------------------------------------- 180 (253)
T ss_pred CCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCC-------------------------------------
Confidence 4678999987665545667888899999999998876432111
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
.. ..+|+.+.++.+. .++|||++|||.|.+|+.+++... +||+||+|++++..=.=+.++
T Consensus 181 ------------~~-g~d~~~i~~~~~~-~~ipvia~GGv~s~~d~~~~~~~~-G~~gvivg~al~~~~~~~~~~ 240 (253)
T PRK02083 181 ------------KN-GYDLELTRAVSDA-VNVPVIASGGAGNLEHFVEAFTEG-GADAALAASIFHFGEITIGEL 240 (253)
T ss_pred ------------CC-CcCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhC-CccEEeEhHHHHcCCCCHHHH
Confidence 12 2378888888765 489999999999999999999863 499999999988753333333
No 69
>KOG2333|consensus
Probab=99.00 E-value=9.6e-10 Score=117.94 Aligned_cols=167 Identities=36% Similarity=0.668 Sum_probs=121.0
Q ss_pred EecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc---ccceeeecccCchHHHHHHHHHHHHhcc
Q psy9514 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMV 395 (611)
Q Consensus 319 Qi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~---~~~~ivQi~g~~p~~~~~aA~~l~~~~g 395 (611)
..+|+-|. +.|+...+.|...-.|.+-.++......+|+|+.+ +..|+||++|+.|+.+.++|+.+.+.+.
T Consensus 273 TTvGNLPF------RRlCk~lGADvTcgEMA~~tpLlqG~~sEWALlkRH~sEdiFGVQlag~~pdt~~kaaq~i~e~~~ 346 (614)
T KOG2333|consen 273 TTVGNLPF------RRLCKKLGADVTCGEMAMATPLLQGTASEWALLKRHQSEDIFGVQLAGSKPDTAAKAAQVIAETCD 346 (614)
T ss_pred cccCCccH------HHHHHHhCCccchhHHHHHHHHhcccchhhhhhhhcCcccceeeEeccCChHHHHHHHHHHHhhcc
Confidence 33566554 34555555555544556667776677778899875 5689999999999999999999999889
Q ss_pred cceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc----cCCchHHHHHHHHHHH-cCCCE
Q psy9514 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI----HKDNNIIHNFMPKFRD-WGASL 470 (611)
Q Consensus 396 ~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~----~~~~~~a~~la~~l~~-aGvd~ 470 (611)
+|.||||+||| + ++.. |-|. .........+++.+.. .|.-.
T Consensus 347 VDFIDlN~GCP---I-----------------------------Dlvy--~qG~GsALl~rp~rl~~~l~~m~~vs~~iP 392 (614)
T KOG2333|consen 347 VDFIDLNMGCP---I-----------------------------DLVY--RQGGGSALLNRPARLIRILRAMNAVSGDIP 392 (614)
T ss_pred eeeeeccCCCC---h-----------------------------heee--ccCCcchhhcCcHHHHHHHHHHHHhccCCC
Confidence 99999999999 4 1111 1111 1122233344443322 23337
Q ss_pred EEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhH-hcCCceEEeccccccccccCCccHHHHHHHH
Q psy9514 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFR-DWGASLITLHGRTREQRYTKQADWDYIEKCA 544 (611)
Q Consensus 471 ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~-~~G~~~itihgrtr~g~~~~~a~~~~i~~~~ 544 (611)
|||.-|+... ..+..++.+++.+. ++|+++||+|||+|+++|++.+||+||.+|+
T Consensus 393 iTVKiRTG~k-------------------eg~~~a~~Li~~i~newg~savTlHGRSRqQRYTK~AnWdYi~e~a 448 (614)
T KOG2333|consen 393 ITVKIRTGTK-------------------EGHPVAHELIPRIVNEWGASAVTLHGRSRQQRYTKSANWDYIEECA 448 (614)
T ss_pred eEEEEecccc-------------------cCchhHHHHHHHHhhccCcceEEecCchhhhhhhcccChHHHHHHH
Confidence 9999998543 35667788888888 9999999999999999999999999999873
No 70
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=98.99 E-value=3.4e-08 Score=104.58 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEE-EEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVK-TRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVK-iR~g~~~~~~~a 456 (611)
+++.+.++.++++...|.|.|-|.+.+|+. ..+.++++.+++..+ +||.++ +- +
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~---------------~~~~e~I~~ir~~~p~~~vi~g~V~---------t 150 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHS---------------DSVINMIQHIKKHLPETFVIAGNVG---------T 150 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCch---------------HHHHHHHHHHHhhCCCCeEEEEecC---------C
Confidence 345566666666422245999998888733 447888999999885 788776 22 3
Q ss_pred HHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCcc
Q psy9514 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 536 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~ 536 (611)
.+-++.|.++|+|+|.|+++...... |+...-.+.++
T Consensus 151 ~e~a~~l~~aGad~i~vg~~~G~~~~-------------------------------------------t~~~~g~~~~~ 187 (326)
T PRK05458 151 PEAVRELENAGADATKVGIGPGKVCI-------------------------------------------TKIKTGFGTGG 187 (326)
T ss_pred HHHHHHHHHcCcCEEEECCCCCcccc-------------------------------------------cccccCCCCCc
Confidence 45678889999999988754321100 00000123355
Q ss_pred HHH--HHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 537 WDY--IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 537 ~~~--i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
|.. ++++++. .++|||+.|||.++.|+.+++..| ||+||+|+.++
T Consensus 188 w~l~ai~~~~~~-~~ipVIAdGGI~~~~Di~KaLa~G--A~aV~vG~~~~ 234 (326)
T PRK05458 188 WQLAALRWCAKA-ARKPIIADGGIRTHGDIAKSIRFG--ATMVMIGSLFA 234 (326)
T ss_pred cHHHHHHHHHHH-cCCCEEEeCCCCCHHHHHHHHHhC--CCEEEechhhc
Confidence 553 7777765 479999999999999999999998 99999998887
No 71
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=98.98 E-value=7.2e-09 Score=106.17 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=105.2
Q ss_pred ccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHH
Q psy9514 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~ 493 (611)
..|-+.++.|+.+ ++|++.+++||+.++|.+. ..-++.|.++|+|.|.-+.|.|. + .+
T Consensus 45 ~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~K~~~-------~~Ea~~L~eaGvDiIDaT~r~rP------~-----~~ 102 (283)
T cd04727 45 AGGVARMADPKMI----KEIMDAVSIPVMAKVRIGH-------FVEAQILEALGVDMIDESEVLTP------A-----DE 102 (283)
T ss_pred cCCeeecCCHHHH----HHHHHhCCCCeEEeeehhH-------HHHHHHHHHcCCCEEeccCCCCc------H-----HH
Confidence 3466677777765 6666677999999999775 56688899999999965555433 1 12
Q ss_pred HhhhcccCch-h------hhhcchhhHhcCCceE--Eecccccc------------------ccc----------cCCcc
Q psy9514 494 CAQLCSRDNN-I------IHNFMPKFRDWGASLI--TLHGRTRE------------------QRY----------TKQAD 536 (611)
Q Consensus 494 ~~~~~~~~~~-~------~~~~~~~l~~~G~~~i--tihgrtr~------------------g~~----------~~~a~ 536 (611)
+..-+++... . ..+-+....+.|+++| |+.|+|.+ ..| ...++
T Consensus 103 ~~~~iK~~~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d 182 (283)
T cd04727 103 EHHIDKHKFKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAP 182 (283)
T ss_pred HHHHHHHHcCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCC
Confidence 2222333221 1 1112224556799999 88788876 222 13468
Q ss_pred HHHHHHHHhhCCCCcEE--EecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 537 WDYIEKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVI--gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
|+.++++.+.. ++||| +.|||+|++++.++++.| ||+|+||++++.
T Consensus 183 ~elLk~l~~~~-~iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~ 230 (283)
T cd04727 183 YELVKETAKLG-RLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFK 230 (283)
T ss_pred HHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhc
Confidence 99999988764 79997 999999999999999987 999999999986
No 72
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=98.96 E-value=6.7e-09 Score=104.77 Aligned_cols=142 Identities=16% Similarity=0.288 Sum_probs=97.5
Q ss_pred eeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHH-hhcCCCEEEEEEc
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN-EVSSLPITVKTRT 447 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~-~~~~~PvtVKiR~ 447 (611)
+.+++.|. +.+++.++.+. |++.| -.|+.++.++..+.++++.+. +. +.+++.+|.
T Consensus 73 ~pi~~ggGI~~~ed~~~~~~~-----Ga~~v--------------vlgs~~l~d~~~~~~~~~~~g~~~--i~~sid~~~ 131 (230)
T TIGR00007 73 VPVQVGGGIRSLEDVEKLLDL-----GVDRV--------------IIGTAAVENPDLVKELLKEYGPER--IVVSLDARG 131 (230)
T ss_pred CCEEEeCCcCCHHHHHHHHHc-----CCCEE--------------EEChHHhhCHHHHHHHHHHhCCCc--EEEEEEEEC
Confidence 34555444 66666666443 55554 247788889999988888875 22 345556553
Q ss_pred c------ccCCc-hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceE
Q psy9514 448 G------IHKDN-NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520 (611)
Q Consensus 448 g------~~~~~-~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~i 520 (611)
+ +.+.. ....++++.+.+.|++.|++|.+++.
T Consensus 132 ~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~----------------------------------------- 170 (230)
T TIGR00007 132 GEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRD----------------------------------------- 170 (230)
T ss_pred CEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCC-----------------------------------------
Confidence 2 22211 23455666666777776666666544
Q ss_pred EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 521 tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
+.+. ..+|+.+.++.+. .++|||++|||.|++|+.+++..| ||+||||++++.+
T Consensus 171 --------g~~~-g~~~~~i~~i~~~-~~ipvia~GGi~~~~di~~~~~~G--adgv~ig~a~~~~ 224 (230)
T TIGR00007 171 --------GTLS-GPNFELTKELVKA-VNVPVIASGGVSSIDDLIALKKLG--VYGVIVGKALYEG 224 (230)
T ss_pred --------CCcC-CCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEeHHHHcC
Confidence 3233 3688899888776 589999999999999999998876 9999999999876
No 73
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=98.95 E-value=5.3e-08 Score=102.84 Aligned_cols=98 Identities=11% Similarity=0.151 Sum_probs=72.1
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhh
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~ 507 (611)
++++.+++. |+.+...+. ..+.++.++++|+|.|.+||+.....
T Consensus 100 ~~i~~lk~~-g~~v~~~v~---------s~~~a~~a~~~GaD~Ivv~g~eagGh-------------------------- 143 (307)
T TIGR03151 100 KYIPRLKEN-GVKVIPVVA---------SVALAKRMEKAGADAVIAEGMESGGH-------------------------- 143 (307)
T ss_pred HHHHHHHHc-CCEEEEEcC---------CHHHHHHHHHcCCCEEEEECcccCCC--------------------------
Confidence 355666553 555554321 23567888999999999999843211
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.....+|..+.++.+. .++|||++|||.+++++.+++..| +|+||||+.++.-+
T Consensus 144 -----------------------~g~~~~~~ll~~v~~~-~~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~ 197 (307)
T TIGR03151 144 -----------------------IGELTTMALVPQVVDA-VSIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAK 197 (307)
T ss_pred -----------------------CCCCcHHHHHHHHHHH-hCCCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccc
Confidence 1112367788887765 489999999999999999999987 99999999998755
No 74
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=98.91 E-value=8.3e-08 Score=103.12 Aligned_cols=99 Identities=20% Similarity=0.185 Sum_probs=75.6
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhh
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~ 507 (611)
+-++.+++.++.||+|| |.. ..+.++++.++|+++|.|++.-+.|.
T Consensus 218 ~~i~~l~~~~~~PvivK---Gv~-----~~eda~~a~~~Gvd~I~VS~HGGrq~-------------------------- 263 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK---GPQ-----CPEDADRALKAGASGIWVTNHGGRQL-------------------------- 263 (367)
T ss_pred HHHHHHHHhcCCCEEEe---CCC-----CHHHHHHHHHcCcCEEEECCcCccCC--------------------------
Confidence 56788888889999999 321 25678889999999875543322333
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+..++.|+.+.++.+.. ..+|||++|||.+..|+.+++..| ||+|||||.+|.
T Consensus 264 -----------------------~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalG--Ad~V~igR~~l~ 317 (367)
T TIGR02708 264 -----------------------DGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASG--ADLVALGRPVIY 317 (367)
T ss_pred -----------------------CCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 34455666677666544 359999999999999999999987 999999999775
No 75
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=98.86 E-value=3.9e-08 Score=100.90 Aligned_cols=150 Identities=15% Similarity=0.193 Sum_probs=104.8
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHH
Q psy9514 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492 (611)
Q Consensus 413 ~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~ 492 (611)
...|-+.+++|+.+ ++|++.+++||+.|+|.|. ..-++.|+++|+|.|.-+-|.+. ++
T Consensus 46 ~~ggv~R~~~p~~I----~~I~~~V~iPVig~~kigh-------~~Ea~~L~~~GvDiIDeTe~lrP------ad----- 103 (287)
T TIGR00343 46 ASGGVARMSDPKMI----KEIMDAVSIPVMAKVRIGH-------FVEAQILEALGVDYIDESEVLTP------AD----- 103 (287)
T ss_pred hcCCeeecCCHHHH----HHHHHhCCCCEEEEeeccH-------HHHHHHHHHcCCCEEEccCCCCc------HH-----
Confidence 34577888898876 4555566899999999885 45578899999999965555433 22
Q ss_pred HHhhhcccCch-h------hhhcchhhHhcCCceE--Eecccccc------------------------------ccccC
Q psy9514 493 KCAQLCSRDNN-I------IHNFMPKFRDWGASLI--TLHGRTRE------------------------------QRYTK 533 (611)
Q Consensus 493 ~~~~~~~~~~~-~------~~~~~~~l~~~G~~~i--tihgrtr~------------------------------g~~~~ 533 (611)
++...+++... . ...-+-...+.|+++| |+.|+|.+ .. .-
T Consensus 104 e~~~~~K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~-~~ 182 (287)
T TIGR00343 104 WTFHIDKKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAK-EL 182 (287)
T ss_pred HHHHHHHHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhc-cc
Confidence 12222222211 0 0111223445799999 66677775 00 02
Q ss_pred CccHHHHHHHHhhCCCCcEE--EecCCCCHHHHHHHHHcCCCccEEEEcHHhhh--CCc
Q psy9514 534 QADWDYIEKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALI--KPW 588 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVI--gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~--dP~ 588 (611)
.++++.+.++.+. .++||| +.|||.||+++..+++.| ||+|+||++++. ||.
T Consensus 183 ~~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melG--AdGVaVGSaI~ks~dP~ 238 (287)
T TIGR00343 183 RVPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSSNPE 238 (287)
T ss_pred CCCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcC--CCEEEEhHHhhcCCCHH
Confidence 3688999998775 489998 999999999999999987 999999999985 554
No 76
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=98.86 E-value=7.5e-08 Score=103.16 Aligned_cols=104 Identities=20% Similarity=0.195 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh
Q psy9514 425 ILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI 504 (611)
Q Consensus 425 ~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~ 504 (611)
+.-+.++.+++.++.||+||- . ...+.++.+.++|+|+|.|++.-+-|.
T Consensus 208 ~~~~~l~~lr~~~~~PvivKg---v-----~~~~dA~~a~~~G~d~I~vsnhGGr~l----------------------- 256 (351)
T cd04737 208 LSPADIEFIAKISGLPVIVKG---I-----QSPEDADVAINAGADGIWVSNHGGRQL----------------------- 256 (351)
T ss_pred CCHHHHHHHHHHhCCcEEEec---C-----CCHHHHHHHHHcCCCEEEEeCCCCccC-----------------------
Confidence 345777889988899999992 2 123667888999999999943221122
Q ss_pred hhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 505 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 505 ~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
+..++.++.+.++.+... ++|||++|||.+..|+.+++..| ||+|||||++
T Consensus 257 --------------------------d~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalG--A~~V~iGr~~ 308 (351)
T cd04737 257 --------------------------DGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASG--ADAVAVGRPV 308 (351)
T ss_pred --------------------------CCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcC--CCEEEECHHH
Confidence 233455666777665542 69999999999999999999987 9999999999
Q ss_pred hhCC
Q psy9514 584 LIKP 587 (611)
Q Consensus 584 L~dP 587 (611)
|...
T Consensus 309 l~~l 312 (351)
T cd04737 309 LYGL 312 (351)
T ss_pred HHHH
Confidence 9865
No 77
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=98.85 E-value=1.7e-07 Score=98.99 Aligned_cols=203 Identities=14% Similarity=0.136 Sum_probs=122.4
Q ss_pred cccCeeecCcEEeccCCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHH
Q psy9514 251 EKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTK 330 (611)
Q Consensus 251 ei~~l~l~nrivlAPMt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~ 330 (611)
++.+++|.=+++.+.|++..|..+-+++++.|---+.-+| ...+|.-+.++.....+.+-+
T Consensus 27 ~~~~~~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK~---------~~E~~~sfvrk~k~~~L~v~~---------- 87 (321)
T TIGR01306 27 TLGKHKFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHRF---------DEESRIPFIKDMQERGLFASI---------- 87 (321)
T ss_pred EECCcEecCcEEeeccchhhhHHHHHHHHHcCCEEEEecC---------CHHHHHHHHHhccccccEEEE----------
Confidence 4458899999999999999998888888888765555553 122343332221111111111
Q ss_pred HHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccce
Q psy9514 331 CTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFI 410 (611)
Q Consensus 331 ~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v 410 (611)
.. |-+++++.++..+++.....|.|=+..+|-
T Consensus 88 ----------------Sv----------------------------G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg---- 119 (321)
T TIGR01306 88 ----------------SV----------------------------GVKACEYEFVTQLAEEALTPEYITIDIAHG---- 119 (321)
T ss_pred ----------------Ec----------------------------CCCHHHHHHHHHHHhcCCCCCEEEEeCccC----
Confidence 11 112333444444443211235544443333
Q ss_pred eccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhH
Q psy9514 411 YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490 (611)
Q Consensus 411 ~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~ 490 (611)
+...+.++++.+++....|+.++=-+ .+.+.++.|.++|+++|.|+......- |..
T Consensus 120 -----------~s~~~~~~i~~i~~~~p~~~vi~GnV-------~t~e~a~~l~~aGad~I~V~~G~G~~~------~tr 175 (321)
T TIGR01306 120 -----------HSNSVINMIKHIKTHLPDSFVIAGNV-------GTPEAVRELENAGADATKVGIGPGKVC------ITK 175 (321)
T ss_pred -----------chHHHHHHHHHHHHhCCCCEEEEecC-------CCHHHHHHHHHcCcCEEEECCCCCccc------cce
Confidence 22456788889998886665444111 145778899999999999983221110 000
Q ss_pred HHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH--HHHHHHHhhCCCCcEEEecCCCCHHHHHHHH
Q psy9514 491 IEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW--DYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568 (611)
Q Consensus 491 i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~--~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l 568 (611)
+ .. -.+.+.| ..+.++++.. ++|||+.|||.+..|+.++|
T Consensus 176 ~----------------------~~---------------g~g~~~~~l~ai~ev~~a~-~~pVIadGGIr~~~Di~KAL 217 (321)
T TIGR01306 176 I----------------------KT---------------GFGTGGWQLAALRWCAKAA-RKPIIADGGIRTHGDIAKSI 217 (321)
T ss_pred e----------------------ee---------------ccCCCchHHHHHHHHHHhc-CCeEEEECCcCcHHHHHHHH
Confidence 0 00 0112233 4677777654 89999999999999999999
Q ss_pred HcCCCccEEEEcHHhh
Q psy9514 569 KKSPSISGVMIGRGAL 584 (611)
Q Consensus 569 ~~G~~aD~VmIGRgaL 584 (611)
..| ||+||+||.+-
T Consensus 218 a~G--Ad~Vmig~~~a 231 (321)
T TIGR01306 218 RFG--ASMVMIGSLFA 231 (321)
T ss_pred HcC--CCEEeechhhc
Confidence 998 99999997653
No 78
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=98.85 E-value=5.1e-08 Score=98.17 Aligned_cols=161 Identities=14% Similarity=0.269 Sum_probs=112.4
Q ss_pred cccceeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEE
Q psy9514 367 RANLFGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVK 444 (611)
Q Consensus 367 ~~~~~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVK 444 (611)
+....-+|++|. +.+.+.++.+.. +.+.-.|+....+|.++.++++..... +-|.+-
T Consensus 72 ~~~~~~vQvGGGIRs~~~v~~ll~~G-------------------~~rViiGt~av~~p~~v~~~~~~~g~r--ivv~lD 130 (241)
T COG0106 72 EATDVPVQVGGGIRSLEDVEALLDAG-------------------VARVIIGTAAVKNPDLVKELCEEYGDR--IVVALD 130 (241)
T ss_pred HhCCCCEEeeCCcCCHHHHHHHHHCC-------------------CCEEEEecceecCHHHHHHHHHHcCCc--EEEEEE
Confidence 356778999998 555555554332 334446888899999999988877532 122222
Q ss_pred EEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecc
Q psy9514 445 TRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHG 524 (611)
Q Consensus 445 iR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihg 524 (611)
.|.+. +.++||.-.. .-...+++..+.+.|+..+.+|.
T Consensus 131 ~r~g~---------------------vav~GW~e~s---------------------~~~~~~l~~~~~~~g~~~ii~Td 168 (241)
T COG0106 131 ARDGK---------------------VAVSGWQEDS---------------------GVELEELAKRLEEVGLAHILYTD 168 (241)
T ss_pred ccCCc---------------------cccccccccc---------------------cCCHHHHHHHHHhcCCCeEEEEe
Confidence 23210 1345543211 12344566777777888888888
Q ss_pred ccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 525 RTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 525 rtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
.+++|...+ .|++.+.++++.. ++|||++|||.|.+|+..+.... ++++|.|||+++..-.-+.+.
T Consensus 169 I~~DGtl~G-~n~~l~~~l~~~~-~ipviaSGGv~s~~Di~~l~~~~-G~~GvIvG~ALy~g~~~l~ea 234 (241)
T COG0106 169 ISRDGTLSG-PNVDLVKELAEAV-DIPVIASGGVSSLDDIKALKELS-GVEGVIVGRALYEGKFTLEEA 234 (241)
T ss_pred cccccccCC-CCHHHHHHHHHHh-CcCEEEecCcCCHHHHHHHHhcC-CCcEEEEehHHhcCCCCHHHH
Confidence 888887655 6899999998875 99999999999999999999883 399999999999876544443
No 79
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=98.81 E-value=2.3e-07 Score=92.93 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=99.1
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI--- 504 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~--- 504 (611)
+.++.+++.+++||.++-. .. + ...++.+.++|++.|++..+.... +.+.++..........
T Consensus 62 ~~~~~i~~~v~iPi~~~~~--i~---~--~~~v~~~~~~Gad~v~l~~~~~~~--------~~~~~~~~~~~~~g~~~~v 126 (217)
T cd00331 62 EDLRAVREAVSLPVLRKDF--II---D--PYQIYEARAAGADAVLLIVAALDD--------EQLKELYELARELGMEVLV 126 (217)
T ss_pred HHHHHHHHhcCCCEEECCe--ec---C--HHHHHHHHHcCCCEEEEeeccCCH--------HHHHHHHHHHHHcCCeEEE
Confidence 4667777777899987621 11 1 136888999999999987764321 1122221111111110
Q ss_pred ---hhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 505 ---IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 505 ---~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
..+.+..+.++|++.+.+++++.. ....+.+.+.++.+.. .++|||+.|||.|++|+.+++..| +|+|+||
T Consensus 127 ~v~~~~e~~~~~~~g~~~i~~t~~~~~---~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~G--a~gvivG 201 (217)
T cd00331 127 EVHDEEELERALALGAKIIGINNRDLK---TFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAG--ADAVLIG 201 (217)
T ss_pred EECCHHHHHHHHHcCCCEEEEeCCCcc---ccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcC--CCEEEEC
Confidence 112245667789999988876543 2345667788877664 478999999999999999999997 9999999
Q ss_pred HHhhhCCchHHHHH
Q psy9514 581 RGALIKPWIFQEIK 594 (611)
Q Consensus 581 RgaL~dP~lf~ei~ 594 (611)
++++..++..+.++
T Consensus 202 sai~~~~~p~~~~~ 215 (217)
T cd00331 202 ESLMRAPDPGAALR 215 (217)
T ss_pred HHHcCCCCHHHHHH
Confidence 99998777655553
No 80
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=9e-09 Score=109.28 Aligned_cols=149 Identities=20% Similarity=0.240 Sum_probs=97.2
Q ss_pred cccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE
Q psy9514 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446 (611)
Q Consensus 367 ~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR 446 (611)
.+.++++|++|++|+.+++||+. +...|+ ..|.-++|+|..--.+
T Consensus 65 ~e~p~~vQl~gsdp~~l~eaA~~--------------------~~~~g~---------------~~IdlN~GCP~~~V~~ 109 (323)
T COG0042 65 EERPVAVQLGGSDPELLAEAAKI--------------------AEELGA---------------DIIDLNCGCPSPKVVK 109 (323)
T ss_pred CCCCEEEEecCCCHHHHHHHHHH--------------------HHhcCC---------------CEEeeeCCCChHHhcC
Confidence 46789999999999999998765 433332 1233345666543333
Q ss_pred cc----ccCCchHHHHHHHHHHHcCC-CEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEE
Q psy9514 447 TG----IHKDNNIIHNFMPKFRDWGA-SLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLIT 521 (611)
Q Consensus 447 ~g----~~~~~~~a~~la~~l~~aGv-d~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~it 521 (611)
-| +-.+.+.+.++++++.++.- -.|||.-|..... .+....+++..+.+.|++++|
T Consensus 110 ~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~-------------------~~~~~~~ia~~~~~~g~~~lt 170 (323)
T COG0042 110 GGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDD-------------------DDILALEIARILEDAGADALT 170 (323)
T ss_pred CCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCc-------------------ccccHHHHHHHHHhcCCCEEE
Confidence 32 22355678889999888764 6799999984321 112345678889999999999
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+||||+ . ... .-| -+|+.+.++.+.- -+.-+||=|-+.+|.-..+..+
T Consensus 171 VHgRtr---~-------------~~y-~~~-------ad~~~I~~vk~~~--~~ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 171 VHGRTR---A-------------QGY-LGP-------ADWDYIKELKEAV--PSIPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred EecccH---H-------------hcC-CCc-------cCHHHHHHHHHhC--CCCeEEeCCCcCCHHHHHHHHH
Confidence 999976 1 111 222 5788888777764 1267777776666665555443
No 81
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.78 E-value=3.2e-07 Score=92.06 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=100.1
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCc---hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhc--cc-C
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDN---NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC--SR-D 501 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~---~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~--~~-~ 501 (611)
+.++.++...++||..-+|.+..+.. ......++.+.++|+++|.+........ ......+.+..+..+- .- -
T Consensus 50 ~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p-~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 50 EDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRP-DGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCC-CCcCHHHHHHHHHHHhCCeEEE
Confidence 44566666678999765555442210 1123467889999999988865432100 0001122233332221 00 0
Q ss_pred chhhhhcchhhHhcCCceEEe--ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 502 NNIIHNFMPKFRDWGASLITL--HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 502 ~~~~~~~~~~l~~~G~~~iti--hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.....+.+..+.++|++.+.+ +|+|.........++++++++.+.. ++||+++|||.+++++.+++..| +|+|++
T Consensus 129 ~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia~GGI~~~~~~~~~l~~G--adgV~v 205 (219)
T cd04729 129 DISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELG--ADAVVV 205 (219)
T ss_pred ECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEEeCCCCCHHHHHHHHHCC--CCEEEE
Confidence 011223456778899999954 6766654334456789999987765 89999999999999999999987 999999
Q ss_pred cHHhhhCCchHH
Q psy9514 580 GRGALIKPWIFQ 591 (611)
Q Consensus 580 GRgaL~dP~lf~ 591 (611)
|+++ .+++.+.
T Consensus 206 Gsal-~~~~~~~ 216 (219)
T cd04729 206 GSAI-TRPEHIT 216 (219)
T ss_pred chHH-hChHhHh
Confidence 9885 5555443
No 82
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=98.71 E-value=6.4e-07 Score=91.60 Aligned_cols=188 Identities=17% Similarity=0.156 Sum_probs=117.6
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHH-----HHHHHHHhhcCCCEEEEEEccccCCc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ-----SVITCMNEVSSLPITVKTRTGIHKDN 453 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~-----eIv~av~~~~~~PvtVKiR~g~~~~~ 453 (611)
+.+.+.++++.+.+ . +|+||||+.||-... -|-.+.+.+..+. ++++.+++.+.+|+.+-.... +..
T Consensus 16 ~~~~~~~~~~~l~~-~-ad~iElgip~sdp~a----dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n--~~~ 87 (244)
T PRK13125 16 NVESFKEFIIGLVE-L-VDILELGIPPKYPKY----DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLE--DYV 87 (244)
T ss_pred CHHHHHHHHHHHHh-h-CCEEEECCCCCCCCC----CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecc--hhh
Confidence 67888999998865 3 999999998873311 2445555556655 799999988889974222222 112
Q ss_pred hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhcCCceE--Ee
Q psy9514 454 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDWGASLI--TL 522 (611)
Q Consensus 454 ~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~G~~~i--ti 522 (611)
....++++.+.++|++.|++|.-.-+. .+.+.++.+.+++..... .+.+..+.+..-..+ ++
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dlp~e~-------~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv 160 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDLLIDY-------PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGL 160 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCCCCCc-------HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEe
Confidence 345678999999999999999643110 122333444444433321 111222222222222 44
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.++|.. .+ ...-.+.++++.+...+.||+.-|||.|++++.++++.| +|+|.+|++++.
T Consensus 161 ~~~~g~-~~-~~~~~~~i~~lr~~~~~~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 161 RPATGV-PL-PVSVERNIKRVRNLVGNKYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCCCCC-Cc-hHHHHHHHHHHHHhcCCCCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 455532 11 111234566665544357999999999999999999987 999999998874
No 83
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=98.71 E-value=6.8e-08 Score=99.13 Aligned_cols=89 Identities=21% Similarity=0.267 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
+..++++.+++.|++.|+|+.+.+.+. ...
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~--------------------------------------------------~~~ 60 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSE--------------------------------------------------GRD 60 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc--------------------------------------------------cCc
Confidence 456788888888999988888875432 224
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.+|+.++++.+. .++||+++|||.|.+|+++++..| +|.|+||++++.+|++++++.+.
T Consensus 61 ~~~~~i~~i~~~-~~ipv~~~GGi~s~~~~~~~l~~G--a~~Viigt~~l~~p~~~~ei~~~ 119 (253)
T PRK02083 61 TMLDVVERVAEQ-VFIPLTVGGGIRSVEDARRLLRAG--ADKVSINSAAVANPELISEAADR 119 (253)
T ss_pred chHHHHHHHHHh-CCCCEEeeCCCCCHHHHHHHHHcC--CCEEEEChhHhhCcHHHHHHHHH
Confidence 678889988776 489999999999999999999976 99999999999999999999775
No 84
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=98.69 E-value=8.3e-07 Score=91.68 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=113.0
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
.|+++|=+. ....-+|++ .+.++.+++.+++||..|-- ..... -+..+..+|+|+|++
T Consensus 82 ~GA~aisvl-------te~~~f~g~--------~~~l~~v~~~v~iPvl~kdf------i~~~~-qi~~a~~~GAD~VlL 139 (260)
T PRK00278 82 GGAACLSVL-------TDERFFQGS--------LEYLRAARAAVSLPVLRKDF------IIDPY-QIYEARAAGADAILL 139 (260)
T ss_pred CCCeEEEEe-------cccccCCCC--------HHHHHHHHHhcCCCEEeeee------cCCHH-HHHHHHHcCCCEEEE
Confidence 588888443 223334554 46677788888999987522 11222 467788999999999
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchh----hhh--cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNI----IHN--FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----~~~--~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~ 547 (611)
.++.... ..+.++.+..+..... .++ -+....+.|++.|-+++|+.. +-..+.+...++++..
T Consensus 140 i~~~l~~--------~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~---~~~~d~~~~~~l~~~~ 208 (260)
T PRK00278 140 IVAALDD--------EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLK---TFEVDLETTERLAPLI 208 (260)
T ss_pred EeccCCH--------HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcc---cccCCHHHHHHHHHhC
Confidence 9987321 2244444444433222 111 224566789999999987653 2345677777777765
Q ss_pred CC-CcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 548 SP-APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 548 ~~-iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
+. +|+|+.|||.|++++.+++..| +|+|.||++++..++.-+.+
T Consensus 209 p~~~~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~dp~~~~ 253 (260)
T PRK00278 209 PSDRLVVSESGIFTPEDLKRLAKAG--ADAVLVGESLMRADDPGAAL 253 (260)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCCCHHHHH
Confidence 43 6999999999999999999997 99999999999877764444
No 85
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=98.69 E-value=8.1e-08 Score=97.83 Aligned_cols=89 Identities=22% Similarity=0.274 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
+..++++.+++.|++.|+++.+++.. +.++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~--------------------------------------------------~~~~ 57 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASS--------------------------------------------------EGRE 57 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccc--------------------------------------------------ccCc
Confidence 56688888888899888888877431 2345
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.+++.++++.+. .++||+++|||.|.+|+++++..| +|+|++||+++.+|+++.++.+.
T Consensus 58 ~~~~~i~~i~~~-~~~pv~~~GGI~s~~d~~~~l~~G--~~~v~ig~~~~~~p~~~~~i~~~ 116 (243)
T cd04731 58 TMLDVVERVAEE-VFIPLTVGGGIRSLEDARRLLRAG--ADKVSINSAAVENPELIREIAKR 116 (243)
T ss_pred ccHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcC--CceEEECchhhhChHHHHHHHHH
Confidence 688888888776 479999999999999999999986 99999999999999999999763
No 86
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=98.68 E-value=3.9e-07 Score=93.49 Aligned_cols=199 Identities=12% Similarity=0.094 Sum_probs=127.0
Q ss_pred CChhhHHHHHHHHhhhc--cceeeeccCCCCcchhhccCCCcccccc--ccceeeecccCchHHHHHHHHHHHHhcccce
Q psy9514 323 NNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQGSGSGLLQR--ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398 (611)
Q Consensus 323 ~~p~~~~~~a~~l~~~~--~v~~idln~gcp~~~~~~~~~~~~l~~~--~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~ 398 (611)
.+|..+++.. .+.+ .++.|||+.|-+.+. +++.+ ...+.+|++|.-- . .++-+.+. .|++
T Consensus 43 ~dP~~~A~~~---~~~Ga~~lHvVDLdgg~~~n~--------~~i~~i~~~~~~vqvGGGIR-~-e~i~~~l~--~Ga~- 106 (262)
T PLN02446 43 KSAAEFAEMY---KRDGLTGGHVIMLGADDASLA--------AALEALRAYPGGLQVGGGVN-S-ENAMSYLD--AGAS- 106 (262)
T ss_pred CCHHHHHHHH---HHCCCCEEEEEECCCCCcccH--------HHHHHHHhCCCCEEEeCCcc-H-HHHHHHHH--cCCC-
Confidence 5566555443 3333 378899976444432 22211 1557899999953 2 33333332 2333
Q ss_pred EEeccCCCccceeccccccccccC----hHHHHHHHHHH-HhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 399 VDVNLGCPIEFIYKQGSGSGLLQR----ANILQSVITCM-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 399 IELN~gCP~~~v~~~g~GsaLl~r----~~~l~eIv~av-~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
+.-.|+.+.++ |+++.++++.. .+.+-+-+-+ |.. + |--.|.+
T Consensus 107 -------------rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~--k~~--~---------------g~~~Va~ 154 (262)
T PLN02446 107 -------------HVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSC--RKK--D---------------GRYYVVT 154 (262)
T ss_pred -------------EEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEE--Eec--C---------------CCEEEEE
Confidence 33357788888 99998888887 3322112222 211 0 1113677
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEE
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVI 553 (611)
+|+..... ....+++..+.+.|+..+.++...++|+..+ ++++.+.++++. +++|||
T Consensus 155 ~GW~~~t~---------------------~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G-~d~el~~~l~~~-~~ipVI 211 (262)
T PLN02446 155 DRWQKFSD---------------------LAVDEETLEFLAAYCDEFLVHGVDVEGKRLG-IDEELVALLGEH-SPIPVT 211 (262)
T ss_pred CCCcccCC---------------------CCHHHHHHHHHHhCCCEEEEEEEcCCCcccC-CCHHHHHHHHhh-CCCCEE
Confidence 88763321 2234455667778899999999999997654 688999998776 699999
Q ss_pred EecCCCCHHHHHHHHHcCCCccEEEEcHHh--hhCCchHHH
Q psy9514 554 GNGDILSYEDYTESLKKSPSISGVMIGRGA--LIKPWIFQE 592 (611)
Q Consensus 554 gnGgI~s~eda~~~l~~G~~aD~VmIGRga--L~dP~lf~e 592 (611)
++|||.|.+|+.++...+.++.+|.|||++ +..---+++
T Consensus 212 ASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~e 252 (262)
T PLN02446 212 YAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDD 252 (262)
T ss_pred EECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHH
Confidence 999999999999998863248999999999 555444444
No 87
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=98.67 E-value=1.6e-06 Score=93.01 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=77.2
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~ 502 (611)
+....+.++.+++.++.||.|| +.. ..+.++.+.++|+++|.|++.-.-+. |
T Consensus 198 ~~~~~~~i~~l~~~~~~PvivK---gv~-----~~~dA~~a~~~G~d~I~vsnhgG~~~-----d--------------- 249 (344)
T cd02922 198 PTLTWDDIKWLRKHTKLPIVLK---GVQ-----TVEDAVLAAEYGVDGIVLSNHGGRQL-----D--------------- 249 (344)
T ss_pred CCCCHHHHHHHHHhcCCcEEEE---cCC-----CHHHHHHHHHcCCCEEEEECCCcccC-----C---------------
Confidence 3445677888999899999999 321 24667888999999999987432111 0
Q ss_pred hhhhhcchhhHhcCCceEEeccccccccccCCccHHHH---HHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEE
Q psy9514 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI---EKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVM 578 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i---~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~Vm 578 (611)
...+-+..+ .+..+.. .++|||+.|||.+..|+.+++..| +|+|+
T Consensus 250 -----------------------------~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLG--A~aV~ 298 (344)
T cd02922 250 -----------------------------TAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLG--AKAVG 298 (344)
T ss_pred -----------------------------CCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcC--CCEEE
Confidence 001112222 3322222 369999999999999999999998 99999
Q ss_pred EcHHhhhCCc
Q psy9514 579 IGRGALIKPW 588 (611)
Q Consensus 579 IGRgaL~dP~ 588 (611)
|||++|..+.
T Consensus 299 iG~~~l~~l~ 308 (344)
T cd02922 299 LGRPFLYALS 308 (344)
T ss_pred ECHHHHHHHh
Confidence 9999999886
No 88
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.65 E-value=1.1e-06 Score=88.38 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCCCEEEEEEccc-c--CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc-Cc
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGI-H--KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR-DN 502 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~-~--~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~-~~ 502 (611)
.+.++.+++.+++||...++--. . --.....+.++.+.++|+++|.+....... + +-..+.++...+++ ..
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~----p-~~~~~~~~i~~~~~~~~ 119 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR----P-DGETLAELVKRIKEYPG 119 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC----C-CCCCHHHHHHHHHhCCC
Confidence 35678888888999876655110 0 000112356788899999999887654210 0 00112223333322 11
Q ss_pred h------hhhhcchhhHhcCCceEEec--cccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 503 N------IIHNFMPKFRDWGASLITLH--GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 503 ~------~~~~~~~~l~~~G~~~itih--grtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
. ...+.+..+.+.|++.+.++ |.|.........++.+++++.+.. ++||++.|||.|++++.++++.| +
T Consensus 120 i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~-~iPvia~GGI~t~~~~~~~l~~G--a 196 (221)
T PRK01130 120 QLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV-GCPVIAEGRINTPEQAKKALELG--A 196 (221)
T ss_pred CeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC-CCCEEEECCCCCHHHHHHHHHCC--C
Confidence 1 12233457888999998653 444432223445688888887764 89999999999999999999987 9
Q ss_pred cEEEEcHHhhhCCchHHH
Q psy9514 575 SGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 575 D~VmIGRgaL~dP~lf~e 592 (611)
|+|+||+++ .+|+...+
T Consensus 197 dgV~iGsai-~~~~~~~~ 213 (221)
T PRK01130 197 HAVVVGGAI-TRPEEITK 213 (221)
T ss_pred CEEEEchHh-cCCHHHHH
Confidence 999999875 55655444
No 89
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=98.57 E-value=2.7e-07 Score=99.44 Aligned_cols=102 Identities=17% Similarity=0.288 Sum_probs=83.9
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccc-
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY- 531 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~- 531 (611)
.+.+.++++.+.+++ +++..|...+ ...++++.+.++|++.|++||||+++.|
T Consensus 118 p~l~~~ii~~vr~a~---VtvkiRl~~~-----------------------~~~e~a~~l~eAGad~I~ihgrt~~q~~~ 171 (369)
T TIGR01304 118 PELLGERIAEVRDSG---VITAVRVSPQ-----------------------NAREIAPIVVKAGADLLVIQGTLVSAEHV 171 (369)
T ss_pred hHHHHHHHHHHHhcc---eEEEEecCCc-----------------------CHHHHHHHHHHCCCCEEEEeccchhhhcc
Confidence 355677888888876 7788776322 2356778899999999999999999888
Q ss_pred cCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.+.++|..+.++++.. ++|||+ |+|.|++++.++++.| ||+||+||+..
T Consensus 172 sg~~~p~~l~~~i~~~-~IPVI~-G~V~t~e~A~~~~~aG--aDgV~~G~gg~ 220 (369)
T TIGR01304 172 STSGEPLNLKEFIGEL-DVPVIA-GGVNDYTTALHLMRTG--AAGVIVGPGGA 220 (369)
T ss_pred CCCCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCCCC
Confidence 5567899999988765 899998 9999999999999976 99999998763
No 90
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=98.55 E-value=5.7e-07 Score=90.77 Aligned_cols=89 Identities=21% Similarity=0.293 Sum_probs=75.2
Q ss_pred hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccccccc-
Q psy9514 454 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT- 532 (611)
Q Consensus 454 ~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~- 532 (611)
.+..++++.+.+.|++.|+|+..++. +.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~---------------------------------------------------~~~ 57 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA---------------------------------------------------KGG 57 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc---------------------------------------------------ccC
Confidence 35678899999999999999876532 12
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
...++.+++++.+.. ++||+.+|+|.|+++++++++.| ||.|+||++++.+|+++.++.+.
T Consensus 58 ~~~~~~~i~~i~~~~-~~pv~~~GgI~~~e~~~~~~~~G--ad~vvigs~~l~dp~~~~~i~~~ 118 (234)
T cd04732 58 EPVNLELIEEIVKAV-GIPVQVGGGIRSLEDIERLLDLG--VSRVIIGTAAVKNPELVKELLKE 118 (234)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEeCCcCCHHHHHHHHHcC--CCEEEECchHHhChHHHHHHHHH
Confidence 345778888877764 89999999999999999999987 99999999999999999999875
No 91
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.55 E-value=1.6e-06 Score=88.21 Aligned_cols=151 Identities=11% Similarity=0.183 Sum_probs=102.8
Q ss_pred ccceeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEE
Q psy9514 368 ANLFGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445 (611)
Q Consensus 368 ~~~~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKi 445 (611)
...+.+|+.|. +.+++.++... |++ +--.|+..+++|+++.++.+..... +=+++-.
T Consensus 74 ~~~~pi~vGGGIrs~e~v~~~l~~-----Ga~--------------kvvigt~a~~~~~~l~~~~~~fg~~--ivvslD~ 132 (234)
T PRK13587 74 LTTKDIEVGGGIRTKSQIMDYFAA-----GIN--------------YCIVGTKGIQDTDWLKEMAHTFPGR--IYLSVDA 132 (234)
T ss_pred hcCCeEEEcCCcCCHHHHHHHHHC-----CCC--------------EEEECchHhcCHHHHHHHHHHcCCC--EEEEEEe
Confidence 33456888887 77776666433 222 2235888899999998888766321 1112211
Q ss_pred EccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 446 R~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
|-+ .+.++|+.... .....+++..+.++|+..+.++..
T Consensus 133 ~~g---------------------~v~~~gw~~~~---------------------~~~~~~~~~~~~~~g~~~ii~tdi 170 (234)
T PRK13587 133 YGE---------------------DIKVNGWEEDT---------------------ELNLFSFVRQLSDIPLGGIIYTDI 170 (234)
T ss_pred eCC---------------------EEEecCCcccC---------------------CCCHHHHHHHHHHcCCCEEEEecc
Confidence 211 13355543211 122345566677778888888888
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+++|... ..+++.+.++.+. .++|||+.|||.|++|+.++++.| +++|++|++++.
T Consensus 171 ~~dGt~~-G~~~~li~~l~~~-~~ipvi~~GGi~s~edi~~l~~~G--~~~vivG~a~~~ 226 (234)
T PRK13587 171 AKDGKMS-GPNFELTGQLVKA-TTIPVIASGGIRHQQDIQRLASLN--VHAAIIGKAAHQ 226 (234)
T ss_pred cCcCCCC-ccCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEhHHHHh
Confidence 8887654 4688888988775 589999999999999999999876 999999999886
No 92
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=98.51 E-value=5.1e-07 Score=92.81 Aligned_cols=88 Identities=22% Similarity=0.266 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
+..++++.+++.|++.|+++...+... ...
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~--------------------------------------------------~~~ 60 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSE--------------------------------------------------GRT 60 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc--------------------------------------------------cCh
Confidence 456888889899999999988764321 334
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++.++++++.. ++||++.|||.|.+|+++++..| ++.|+||++++.+|++++++.+
T Consensus 61 ~n~~~i~~i~~~~-~~pv~~~GGi~s~~d~~~~~~~G--a~~vivgt~~~~~p~~~~~~~~ 118 (254)
T TIGR00735 61 TMIDVVERTAETV-FIPLTVGGGIKSIEDVDKLLRAG--ADKVSINTAAVKNPELIYELAD 118 (254)
T ss_pred hhHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcC--CCEEEEChhHhhChHHHHHHHH
Confidence 5788888887764 89999999999999999999987 9999999999999999999875
No 93
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.50 E-value=2.8e-06 Score=86.83 Aligned_cols=194 Identities=17% Similarity=0.233 Sum_probs=123.4
Q ss_pred cCCChhhHHHHHHHHhhhc--cceeeeccC---CCCcchhhccCCCccccc---cccceeeecccC--chHHHHHHHHHH
Q psy9514 321 CGNNPYVLTKCTQLLEEQM--AVDFVDVNL---GCPIEFIYKQGSGSGLLQ---RANLFGVQLCGN--NPYVLTKCTQLL 390 (611)
Q Consensus 321 ~g~~p~~~~~~a~~l~~~~--~v~~idln~---gcp~~~~~~~~~~~~l~~---~~~~~ivQi~g~--~p~~~~~aA~~l 390 (611)
.+++|-.+++. ..+.+ .+.++||+. |.+... +++. +.. +.+|+.|. +.+++.++...
T Consensus 28 ~~~dP~~~A~~---~~~~ga~~lhivDLd~a~~g~~~n~--------~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~- 94 (241)
T PRK14114 28 YEKDPAELVEK---LIEEGFTLIHVVDLSKAIENSVENL--------PVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKL- 94 (241)
T ss_pred ECCCHHHHHHH---HHHCCCCEEEEEECCCcccCCcchH--------HHHHHHHhhc-CcEEEecCCCCHHHHHHHHHC-
Confidence 44566655544 33333 367889873 333322 2222 122 56788887 66776666443
Q ss_pred HHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCE
Q psy9514 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470 (611)
Q Consensus 391 ~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ 470 (611)
|+ .+.-.|+..+++|+++.++ ..... .+-+++-+|- | -
T Consensus 95 ----Ga--------------~rvvigT~a~~~p~~l~~~-~~~~~--~ivvslD~k~-------------------g--~ 132 (241)
T PRK14114 95 ----GY--------------RRQIVSSKVLEDPSFLKFL-KEIDV--EPVFSLDTRG-------------------G--K 132 (241)
T ss_pred ----CC--------------CEEEECchhhCCHHHHHHH-HHhCC--CEEEEEEccC-------------------C--E
Confidence 22 2223588888999998888 43311 1112222121 1 1
Q ss_pred EEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCC
Q psy9514 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550 (611)
Q Consensus 471 ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~i 550 (611)
+.++|+... ......+++..+.+.|+..+.++...++|+..+ +|++.+.++++. +++
T Consensus 133 v~~~gw~~~---------------------~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G-~d~el~~~l~~~-~~~ 189 (241)
T PRK14114 133 VAFKGWLAE---------------------EEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQE-HDFSLTRKIAIE-AEV 189 (241)
T ss_pred EeeCCCeec---------------------CCCCHHHHHHHHHhcCCCEEEEEeechhhcCCC-cCHHHHHHHHHH-CCC
Confidence 335554321 112234566777888888888888888887655 789999998776 589
Q ss_pred cEEEecCCCCHHHHHHHHHc-----CCCccEEEEcHHhhhCCchHHHH
Q psy9514 551 PLYGNGDILSYEDYTESLKK-----SPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 551 PVIgnGgI~s~eda~~~l~~-----G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
|||+.|||.|.+|+.++... | ++++|.||++++..=-=++++
T Consensus 190 pviasGGv~s~~Dl~~l~~~~~~~~g-~v~gvivg~Al~~g~i~~~e~ 236 (241)
T PRK14114 190 KVFAAGGISSENSLKTAQRVHRETNG-LLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_pred CEEEECCCCCHHHHHHHHhcccccCC-cEEEEEEehHHHCCCCCHHHH
Confidence 99999999999999999875 4 599999999998875545554
No 94
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=98.50 E-value=9.3e-07 Score=89.59 Aligned_cols=190 Identities=18% Similarity=0.290 Sum_probs=116.4
Q ss_pred cCCChhhHHHHHHHHhhh--ccceeeeccC---CCCcchhhccCCCccccc---cccceeeecccC--chHHHHHHHHHH
Q psy9514 321 CGNNPYVLTKCTQLLEEQ--MAVDFVDVNL---GCPIEFIYKQGSGSGLLQ---RANLFGVQLCGN--NPYVLTKCTQLL 390 (611)
Q Consensus 321 ~g~~p~~~~~~a~~l~~~--~~v~~idln~---gcp~~~~~~~~~~~~l~~---~~~~~ivQi~g~--~p~~~~~aA~~l 390 (611)
...+|..+++.. ... -.+.++||+. |.+... +++. +...+.+|+.|. +.+++.++....
T Consensus 27 ~~~dP~~~a~~~---~~~g~~~l~ivDLdaa~~g~~~n~--------~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~G 95 (229)
T PF00977_consen 27 YSGDPVEVAKAF---NEQGADELHIVDLDAAKEGRGSNL--------ELIKEIAKETGIPIQVGGGIRSIEDAERLLDAG 95 (229)
T ss_dssp ECCCHHHHHHHH---HHTT-SEEEEEEHHHHCCTHHHHH--------HHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT
T ss_pred ECcCHHHHHHHH---HHcCCCEEEEEEccCcccCchhHH--------HHHHHHHhcCCccEEEeCccCcHHHHHHHHHhC
Confidence 345666655543 222 2466788862 323222 2222 244578888888 666666654332
Q ss_pred HHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCE
Q psy9514 391 EEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASL 470 (611)
Q Consensus 391 ~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ 470 (611)
+.+--.|+..+.+|+++.++++...... +=+++-+|.| -.
T Consensus 96 -------------------a~~Vvigt~~~~~~~~l~~~~~~~g~~~-ivvslD~~~g--------------------~~ 135 (229)
T PF00977_consen 96 -------------------ADRVVIGTEALEDPELLEELAERYGSQR-IVVSLDARDG--------------------YK 135 (229)
T ss_dssp --------------------SEEEESHHHHHCCHHHHHHHHHHGGGG-EEEEEEEEET--------------------EE
T ss_pred -------------------CCEEEeChHHhhchhHHHHHHHHcCccc-EEEEEEeeec--------------------eE
Confidence 2233468889999999999998876511 1222223322 01
Q ss_pred EEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCC
Q psy9514 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPA 550 (611)
Q Consensus 471 ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~i 550 (611)
+.++++.... .....+++..+.+.|+..+.++...++|...+ ++++.++++.+.. ++
T Consensus 136 v~~~gw~~~~---------------------~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G-~d~~~~~~l~~~~-~~ 192 (229)
T PF00977_consen 136 VATNGWQESS---------------------GIDLEEFAKRLEELGAGEIILTDIDRDGTMQG-PDLELLKQLAEAV-NI 192 (229)
T ss_dssp EEETTTTEEE---------------------EEEHHHHHHHHHHTT-SEEEEEETTTTTTSSS---HHHHHHHHHHH-SS
T ss_pred EEecCccccC---------------------CcCHHHHHHHHHhcCCcEEEEeeccccCCcCC-CCHHHHHHHHHHc-CC
Confidence 3334433211 11233455566667777777777777776655 6788888887776 99
Q ss_pred cEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 551 PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 551 PVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
|||+.|||.|.+|+.++...| +|+|++|++++..
T Consensus 193 ~viasGGv~~~~Dl~~l~~~G--~~gvivg~al~~g 226 (229)
T PF00977_consen 193 PVIASGGVRSLEDLRELKKAG--IDGVIVGSALHEG 226 (229)
T ss_dssp EEEEESS--SHHHHHHHHHTT--ECEEEESHHHHTT
T ss_pred CEEEecCCCCHHHHHHHHHCC--CcEEEEehHhhCC
Confidence 999999999999999999887 9999999998753
No 95
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=98.44 E-value=2.5e-05 Score=79.12 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=92.0
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++++.+.|+.+.+..+-+.|-|- +..+- -.|+.++..+ +++.+..+..-+.|--- ..++ ..
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlE-------Vi~d~--~~Llpd~~~t---v~aa~~L~~~Gf~vlpy--c~dd----~~ 135 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLE-------VIGDD--KTLLPDPIET---LKAAEILVKEGFTVLPY--CTDD----PV 135 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEE-------EecCc--cccccCHHHH---HHHHHHHHHCCCEEEEE--eCCC----HH
Confidence 677888888888877788887664 21111 1344554433 34443333222222200 0122 36
Q ss_pred HHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHH
Q psy9514 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538 (611)
Q Consensus 459 la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~ 538 (611)
++++|++.|+++|..+|..-... .+..+++
T Consensus 136 ~ar~l~~~G~~~vmPlg~pIGsg--------------------------------------------------~Gi~~~~ 165 (248)
T cd04728 136 LAKRLEDAGCAAVMPLGSPIGSG--------------------------------------------------QGLLNPY 165 (248)
T ss_pred HHHHHHHcCCCEeCCCCcCCCCC--------------------------------------------------CCCCCHH
Confidence 78899999999986655542211 2334577
Q ss_pred HHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh--CCch
Q psy9514 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI--KPWI 589 (611)
Q Consensus 539 ~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~--dP~l 589 (611)
+|+.+.+. .++|||..|||.|++|+.++++.| +|+|++|.+... ||..
T Consensus 166 ~I~~I~e~-~~vpVI~egGI~tpeda~~AmelG--AdgVlV~SAIt~a~dP~~ 215 (248)
T cd04728 166 NLRIIIER-ADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAIAKAKDPVA 215 (248)
T ss_pred HHHHHHHh-CCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEChHhcCCCCHHH
Confidence 88877765 589999999999999999999998 999999988865 3654
No 96
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.43 E-value=9.2e-06 Score=88.43 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~ 457 (611)
.++.+..+-.+++ +|+|.|=|.++++. ...+.++++.+++.. +.+|.++-- .+.
T Consensus 151 ~~~~~~~v~~lv~--aGvDvI~iD~a~g~---------------~~~~~~~v~~ik~~~p~~~vi~g~V--------~T~ 205 (404)
T PRK06843 151 DIDTIERVEELVK--AHVDILVIDSAHGH---------------STRIIELVKKIKTKYPNLDLIAGNI--------VTK 205 (404)
T ss_pred CHHHHHHHHHHHh--cCCCEEEEECCCCC---------------ChhHHHHHHHHHhhCCCCcEEEEec--------CCH
Confidence 4554555544443 58999988877762 345678899999877 567766521 134
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~ 537 (611)
+-++.+.++|+|+|.+.-.....- ++|.-. -.+.+.+
T Consensus 206 e~a~~l~~aGaD~I~vG~g~Gs~c-----------------------------------------~tr~~~--g~g~p~l 242 (404)
T PRK06843 206 EAALDLISVGADCLKVGIGPGSIC-----------------------------------------TTRIVA--GVGVPQI 242 (404)
T ss_pred HHHHHHHHcCCCEEEECCCCCcCC-----------------------------------------cceeec--CCCCChH
Confidence 567788899999988632221000 000000 1122334
Q ss_pred HHH---HHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 538 DYI---EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 538 ~~i---~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..+ +++++. .++|||+-|+|.++.|+.+++..| ||+||||+.+..
T Consensus 243 tai~~v~~~~~~-~~vpVIAdGGI~~~~Di~KALalG--A~aVmvGs~~ag 290 (404)
T PRK06843 243 TAICDVYEVCKN-TNICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLFAG 290 (404)
T ss_pred HHHHHHHHHHhh-cCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcceeee
Confidence 444 443333 479999999999999999999998 999999988765
No 97
>KOG1799|consensus
Probab=98.42 E-value=1.3e-07 Score=98.30 Aligned_cols=174 Identities=18% Similarity=0.173 Sum_probs=126.7
Q ss_pred CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHH
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~ 457 (611)
++-..+.+++...+ ++|.|..|+|++||++ ...+|.|.++.+.|..+.||.+.|++.+.+|+.-|+.... ++..
T Consensus 215 ynk~~w~el~d~~e-qag~d~lE~nlscphg-m~ergmgla~gq~p~v~~EvC~Wi~A~~~Ip~~~kmTPNi----td~r 288 (471)
T KOG1799|consen 215 YNKKCWMELNDSGE-QAGQDDLETNLSCPHG-MCERGMGLALGQCPIVDCEVCGWINAKATIPMVSKMTPNI----TDKR 288 (471)
T ss_pred hhhhhHHHHhhhHH-hhcccchhccCCCCCC-CccccccceeccChhhhHHHhhhhhhccccccccccCCCc----cccc
Confidence 35566777777764 6799999999999998 5567899999999999999999999999999999976544 3444
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCc--
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA-- 535 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a-- 535 (611)
++++...+.|+..|+..++...-. +.....+.| .+.+.||+..|+|+..+
T Consensus 289 evar~~~~~g~~GiaA~NTi~SvM--------------------~i~~~~~~P--------~~~~~~~sT~GG~S~~AvR 340 (471)
T KOG1799|consen 289 EVARSVNPVGCEGIAAINTIMSVM--------------------GIDMKTLRP--------EPCVEGYSTPGGYSYKAVR 340 (471)
T ss_pred ccchhcCcccccchhhHhHHHHHh--------------------cccccccCC--------CcccccccCCCCccccccc
Confidence 667777888888877665532111 000001111 12456777777776544
Q ss_pred --cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 536 --DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 536 --~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.+..+..+++.....|+.|.|||.|.+|+.+++..| ...|++..|.+..-
T Consensus 341 PIAl~~V~~IA~~m~~F~l~~~GGvEt~~~~~~Fil~G--s~~vQVCt~V~~~~ 392 (471)
T KOG1799|consen 341 PIALAKVMNIAKMMKEFSLSGIGGVETGYDAAEFILLG--SNTVQVCTGVMMHG 392 (471)
T ss_pred hHHHHHHHHHHHHhhcCccccccCcccccchhhHhhcC--CcHhhhhhHHHhcC
Confidence 344444555555567999999999999999999998 88999998887654
No 98
>KOG1677|consensus
Probab=98.42 E-value=1.4e-07 Score=100.41 Aligned_cols=61 Identities=33% Similarity=0.699 Sum_probs=50.9
Q ss_pred CcccCCcccccCCCCCCCCC-CCCCCCcCChhHHh--------hcCCCCCCCCCcceeccccCCCCCccccCc
Q psy9514 72 PEDCYCPFLKDSTLEQTCKY-GEKCKFVHDKNVFM--------KSKPEDISEQCYVFLQHGYCPMGIACRFGS 135 (611)
Q Consensus 72 ~~~~lC~~~~~~~~~~~C~~-g~~C~f~Hd~~~yl--------~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~ 135 (611)
-+..||.+|... +.|+| |++|||.|-+++-. ..-+.--+..|+.|...|+||||.+|+|.+
T Consensus 130 ~kt~lc~~~~~~---g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H 199 (332)
T KOG1677|consen 130 YKTPLCRSFRKS---GTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIH 199 (332)
T ss_pred ccCCcceeeecC---ccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecC
Confidence 458999999988 78999 99999999877654 122344478999999999999999999984
No 99
>KOG1436|consensus
Probab=98.39 E-value=4e-06 Score=86.61 Aligned_cols=181 Identities=17% Similarity=0.193 Sum_probs=112.8
Q ss_pred eeeecccC--chHHHHHHHHHHHHh-cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhh-----c--CCC
Q psy9514 371 FGVQLCGN--NPYVLTKCTQLLEEQ-MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-----S--SLP 440 (611)
Q Consensus 371 ~ivQi~g~--~p~~~~~aA~~l~~~-~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-----~--~~P 440 (611)
++|.+.-| +.+.....++-+... ...|..+||.+|| .+. |---++--..+.+.+..+..+ + ..|
T Consensus 181 lGVnlgknk~s~d~~~dy~~gV~~~g~~adylviNvSsP---Ntp---Glr~lq~k~~L~~ll~~v~~a~~~~~~~~~~p 254 (398)
T KOG1436|consen 181 LGVNLGKNKTSEDAILDYVEGVRVFGPFADYLVINVSSP---NTP---GLRSLQKKSDLRKLLTKVVQARDKLPLGKKPP 254 (398)
T ss_pred ceeeeccccCCcchHHHHHHHhhhcccccceEEEeccCC---CCc---chhhhhhHHHHHHHHHHHHHHHhccccCCCCc
Confidence 45555554 334444444444333 2678899999999 332 222233333344444444332 1 248
Q ss_pred EEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceE
Q psy9514 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLI 520 (611)
Q Consensus 441 vtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~i 520 (611)
+.+|+-.... ..+..+++..+.+..+|.+.+++.+-... ... +
T Consensus 255 vl~kiapDL~--~~el~dia~v~kk~~idg~IvsnttVsrp----~~~-------------------------------~ 297 (398)
T KOG1436|consen 255 VLVKIAPDLS--EKELKDIALVVKKLNIDGLIVSNTTVSRP----KAS-------------------------------L 297 (398)
T ss_pred eEEEeccchh--HHHHHHHHHHHHHhCccceeecCceeecC----ccc-------------------------------c
Confidence 8888764433 24566778778889999999998763321 000 0
Q ss_pred Eecccccccc----ccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh-hCCchHHHHH
Q psy9514 521 TLHGRTREQR----YTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL-IKPWIFQEIK 594 (611)
Q Consensus 521 tihgrtr~g~----~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL-~dP~lf~ei~ 594 (611)
...-.+..|+ +.++-..+.+++..+.. ..|||||+|||.|-.||++.+..| +..|+|++++- ..|-++++|+
T Consensus 298 ~~~~~~etGGLsG~plk~~st~~vR~mY~lt~g~IpiIG~GGV~SG~DA~EkiraG--ASlvQlyTal~yeGp~i~~kIk 375 (398)
T KOG1436|consen 298 VNKLKEETGGLSGPPLKPISTNTVRAMYTLTRGKIPIIGCGGVSSGKDAYEKIRAG--ASLVQLYTALVYEGPAIIEKIK 375 (398)
T ss_pred ccccccccCCCCCCccchhHHHHHHHHHHhccCCCceEeecCccccHhHHHHHhcC--chHHHHHHHHhhcCchhHHHHH
Confidence 0001111122 33334556666665543 479999999999999999999998 99999999985 4699999998
Q ss_pred cc
Q psy9514 595 EK 596 (611)
Q Consensus 595 ~g 596 (611)
..
T Consensus 376 ~E 377 (398)
T KOG1436|consen 376 RE 377 (398)
T ss_pred HH
Confidence 64
No 100
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.39 E-value=1.4e-06 Score=94.20 Aligned_cols=101 Identities=15% Similarity=0.283 Sum_probs=81.4
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccccccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~ 532 (611)
.+.+.++++.+.++| +++.-|... ....++++.+.++|++.|++|+||+++.|.
T Consensus 117 p~l~~~iv~~~~~~~---V~v~vr~~~-----------------------~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~ 170 (368)
T PRK08649 117 PELITERIAEIRDAG---VIVAVSLSP-----------------------QRAQELAPTVVEAGVDLFVIQGTVVSAEHV 170 (368)
T ss_pred HHHHHHHHHHHHhCe---EEEEEecCC-----------------------cCHHHHHHHHHHCCCCEEEEeccchhhhcc
Confidence 356778888888865 445444311 123466788899999999999999999988
Q ss_pred CCc-cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 533 KQA-DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 533 ~~a-~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
... +|..+.+.++.. ++|||+ |+|.|++++.++++.| ||+||+|+|-
T Consensus 171 ~~~~~~~~i~~~ik~~-~ipVIa-G~V~t~e~A~~l~~aG--AD~V~VG~G~ 218 (368)
T PRK08649 171 SKEGEPLNLKEFIYEL-DVPVIV-GGCVTYTTALHLMRTG--AAGVLVGIGP 218 (368)
T ss_pred CCcCCHHHHHHHHHHC-CCCEEE-eCCCCHHHHHHHHHcC--CCEEEECCCC
Confidence 776 799888888875 899999 9999999999999976 9999999884
No 101
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=98.37 E-value=1.7e-05 Score=78.52 Aligned_cols=190 Identities=13% Similarity=0.125 Sum_probs=109.9
Q ss_pred eecccCchHHHHHHHHHHHHhcccceEEec-cCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVN-LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 373 vQi~g~~p~~~~~aA~~l~~~~g~D~IELN-~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
.++...++..+.+.++.+. ..|+|.|++. +-+|.- .+..+..++++.+++....|+.|-+..-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~-~~g~d~i~~~~~Dg~~~------------~~~~~~~~~v~~i~~~~~~~v~v~lm~~--- 66 (210)
T TIGR01163 3 PSILSADFARLGEEVKAVE-EAGADWIHVDVMDGHFV------------PNLTFGPPVLEALRKYTDLPIDVHLMVE--- 66 (210)
T ss_pred chhhcCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCCC------------CCcccCHHHHHHHHhcCCCcEEEEeeeC---
Confidence 3455667777777777775 4699999996 334421 1222445777888776666764422221
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHh--cCCceEEec
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRD--WGASLITLH 523 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~--~G~~~itih 523 (611)
...++++.+.++|++.|++|+...... ..+...++..... .......+++ .+++.+.+.
T Consensus 67 ---~~~~~~~~~~~~gadgv~vh~~~~~~~----------~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~ 133 (210)
T TIGR01163 67 ---NPDRYIEDFAEAGADIITVHPEASEHI----------HRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLM 133 (210)
T ss_pred ---CHHHHHHHHHHcCCCEEEEccCCchhH----------HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEE
Confidence 124678888899999999998642211 1111222111111 1111122222 257776553
Q ss_pred cccc--cccccCCccHHHHHHHHhhC----CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 524 GRTR--EQRYTKQADWDYIEKCAQLC----SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 524 grtr--~g~~~~~a~~~~i~~~~k~~----~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+... .+....+..++.+.++.+.. .++||+..|||+ ++.+.++++.| +|+|++|++++..|++...++
T Consensus 134 ~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI~-~env~~l~~~g--ad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 134 SVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVN-DDNARELAEAG--ADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred EEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCcC-HHHHHHHHHcC--CCEEEEChHHhCCCCHHHHHH
Confidence 3211 11111122234444443322 237899999995 89999999887 999999999998887665554
No 102
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=98.35 E-value=1.2e-05 Score=86.00 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc
Q psy9514 424 NILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502 (611)
Q Consensus 424 ~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~ 502 (611)
+.+.+.++.+++..+ +||++-= -.+.+-++.|.++|+|+|-|--+...--.
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaGN--------V~T~e~a~~L~~aGad~vkVGiGpGsiCt-------------------- 185 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAGN--------VVTYEGAKDLIDAGADAVKVGIGPGSICT-------------------- 185 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEE--------E-SHHHHHHHHHTT-SEEEESSSSSTTBH--------------------
T ss_pred HHHHHHHHHHHHhCCCceEEecc--------cCCHHHHHHHHHcCCCEEEEeccCCcccc--------------------
Confidence 345677888888775 7776641 12345677899999999988644321110
Q ss_pred hhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
|+.-.-.+-+-+..+.+|++.. ..+|||+=|||.+.-|+.++|..| +|+||+|
T Consensus 186 -----------------------Tr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~G--Ad~VMlG 240 (352)
T PF00478_consen 186 -----------------------TREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAG--ADAVMLG 240 (352)
T ss_dssp -----------------------HHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT---SEEEES
T ss_pred -----------------------cccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeec--ccceeec
Confidence 0000011223344444444322 279999999999999999999998 9999999
Q ss_pred HHh
Q psy9514 581 RGA 583 (611)
Q Consensus 581 Rga 583 (611)
+-+
T Consensus 241 ~ll 243 (352)
T PF00478_consen 241 SLL 243 (352)
T ss_dssp TTT
T ss_pred hhh
Confidence 543
No 103
>PRK00208 thiG thiazole synthase; Reviewed
Probab=98.33 E-value=5.5e-05 Score=76.75 Aligned_cols=140 Identities=9% Similarity=0.100 Sum_probs=90.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++++.+.|+.+.+..+-+.|-|- +..+- -.++.++. +.|++.+..+..-+.|--- ..+ -..
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlE-------Vi~d~--~~llpd~~---~tv~aa~~L~~~Gf~vlpy--c~~----d~~ 135 (250)
T PRK00208 74 TAEEAVRTARLAREALGTNWIKLE-------VIGDD--KTLLPDPI---ETLKAAEILVKEGFVVLPY--CTD----DPV 135 (250)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEE-------EecCC--CCCCcCHH---HHHHHHHHHHHCCCEEEEE--eCC----CHH
Confidence 677888888888877777887664 21111 12333433 3344444433222222200 012 236
Q ss_pred HHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHH
Q psy9514 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538 (611)
Q Consensus 459 la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~ 538 (611)
++++|++.|+++|...|..-.. -.+..+++
T Consensus 136 ~ak~l~~~G~~~vmPlg~pIGs--------------------------------------------------g~gi~~~~ 165 (250)
T PRK00208 136 LAKRLEEAGCAAVMPLGAPIGS--------------------------------------------------GLGLLNPY 165 (250)
T ss_pred HHHHHHHcCCCEeCCCCcCCCC--------------------------------------------------CCCCCCHH
Confidence 7889999999998555543221 12333567
Q ss_pred HHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh--CCch
Q psy9514 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI--KPWI 589 (611)
Q Consensus 539 ~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~--dP~l 589 (611)
++..+.+. .++|||..|||.+++|+.++++.| +|+|++|.|... ||..
T Consensus 166 ~i~~i~e~-~~vpVIveaGI~tpeda~~AmelG--AdgVlV~SAItka~dP~~ 215 (250)
T PRK00208 166 NLRIIIEQ-ADVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAIAVAGDPVA 215 (250)
T ss_pred HHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEChHhhCCCCHHH
Confidence 77777665 589999999999999999999998 999999988875 3643
No 104
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=98.32 E-value=5.5e-05 Score=79.97 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHH
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNF 459 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~l 459 (611)
++++.++..+++...+.|.|=|..+|- +...+.+.|+.+++...-+..++=-+ .+.+-
T Consensus 106 ~~d~er~~~L~~a~~~~d~iviD~AhG---------------hs~~~i~~ik~ir~~~p~~~viaGNV-------~T~e~ 163 (343)
T TIGR01305 106 DNDLEKMTSILEAVPQLKFICLDVANG---------------YSEHFVEFVKLVREAFPEHTIMAGNV-------VTGEM 163 (343)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC---------------cHHHHHHHHHHHHhhCCCCeEEEecc-------cCHHH
Confidence 344444444443323466655554444 22456788899998875455554111 12355
Q ss_pred HHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHH
Q psy9514 460 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 539 (611)
Q Consensus 460 a~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~ 539 (611)
++.|.++|+|+|-|.-+...--. ||.-.-.+-+-+..
T Consensus 164 a~~Li~aGAD~ikVgiGpGSict-------------------------------------------tR~~~Gvg~pqltA 200 (343)
T TIGR01305 164 VEELILSGADIVKVGIGPGSVCT-------------------------------------------TRTKTGVGYPQLSA 200 (343)
T ss_pred HHHHHHcCCCEEEEcccCCCccc-------------------------------------------CceeCCCCcCHHHH
Confidence 77888999999987633211000 00000112234555
Q ss_pred HHHHHhhCC--CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 540 IEKCAQLCS--PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 540 i~~~~k~~~--~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
+.++++... .+|||+-|||.+.-|+.++|..| +|+||+| ++++.
T Consensus 201 v~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~G--Ad~VMlG-~llAG 246 (343)
T TIGR01305 201 VIECADAAHGLKGHIISDGGCTCPGDVAKAFGAG--ADFVMLG-GMFAG 246 (343)
T ss_pred HHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcC--CCEEEEC-HhhhC
Confidence 666655432 68999999999999999999998 9999999 66653
No 105
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=98.31 E-value=8.2e-06 Score=83.50 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=108.3
Q ss_pred cceeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE
Q psy9514 369 NLFGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR 446 (611)
..+.+|+.|. +.+++..+.... + .+--.|+....+|+++.++.+..... +-+++-.|
T Consensus 73 ~~~~v~vgGGIrs~e~~~~~l~~G-----a--------------~~vvigT~a~~~p~~~~~~~~~~g~~--ivvslD~k 131 (243)
T TIGR01919 73 LVVVEELSGGRRDDSSLRAALTGG-----R--------------ARVNGGTAALENPWWAAAVIRYGGDI--VAVGLDVL 131 (243)
T ss_pred CCCCEEEcCCCCCHHHHHHHHHcC-----C--------------CEEEECchhhCCHHHHHHHHHHcccc--EEEEEEEe
Confidence 3456788887 777776664432 2 22345788889999999888766332 12233222
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
.+ +. -..+.++|+.. . .....+++..+.+.|+..+.++...
T Consensus 132 ~~---g~--------------~~~v~~~Gw~~-~---------------------~~~~~~~~~~~~~~g~~~ii~tdI~ 172 (243)
T TIGR01919 132 ED---GE--------------WHTLGNRGWSD-G---------------------GGDLEVLERLLDSGGCSRVVVTDSK 172 (243)
T ss_pred cC---Cc--------------eEEEECCCeec-C---------------------CCcHHHHHHHHHhCCCCEEEEEecC
Confidence 10 00 01244455432 0 1123456667778888888888888
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHH--HcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL--KKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l--~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
++|...+ +|++.+.++.+. +++|||+.|||.|.+|+.++- ... ++++|++|++++..=--++++
T Consensus 173 ~dGt~~G-~d~~l~~~l~~~-~~~pviasGGv~s~eDl~~l~~l~~~-Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 173 KDGLSGG-PNELLLEVVAAR-TDAIVAASGGSSLLDDLRAIKYLDEG-GVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred CcccCCC-cCHHHHHHHHhh-CCCCEEEECCcCCHHHHHHHHhhccC-CeeEEEEhHHHHcCCCCHHHH
Confidence 8887655 788999888765 589999999999999999874 233 499999999999876555554
No 106
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=98.25 E-value=3.7e-05 Score=82.94 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~ 502 (611)
+.+.-+-|+.+++.++.||.||=-+ ..+-++.+.+.|+++|.|+|.-.-|. ||
T Consensus 210 ~~~~w~~i~~~~~~~~~pvivKgv~--------~~~da~~~~~~G~~~i~vs~hGGr~~-----d~-------------- 262 (356)
T PF01070_consen 210 PSLTWDDIEWIRKQWKLPVIVKGVL--------SPEDAKRAVDAGVDGIDVSNHGGRQL-----DW-------------- 262 (356)
T ss_dssp TT-SHHHHHHHHHHCSSEEEEEEE---------SHHHHHHHHHTT-SEEEEESGTGTSS-----TT--------------
T ss_pred CCCCHHHHHHHhcccCCceEEEecc--------cHHHHHHHHhcCCCEEEecCCCcccC-----cc--------------
Confidence 3344455888899999999999442 23457788999999999986432221 22
Q ss_pred hhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
+++..+.+.++.+.. .++|||+.|||.+..|+.+++..| +|+|.|||
T Consensus 263 ------------------------------~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLG--A~~v~igr 310 (356)
T PF01070_consen 263 ------------------------------GPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALG--ADAVGIGR 310 (356)
T ss_dssp ------------------------------S-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT---SEEEESH
T ss_pred ------------------------------ccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcC--CCeEEEcc
Confidence 233345555555533 379999999999999999999998 99999999
Q ss_pred Hhhh
Q psy9514 582 GALI 585 (611)
Q Consensus 582 gaL~ 585 (611)
.+|.
T Consensus 311 ~~l~ 314 (356)
T PF01070_consen 311 PFLY 314 (356)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 107
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.25 E-value=3.9e-05 Score=74.52 Aligned_cols=146 Identities=17% Similarity=0.068 Sum_probs=104.7
Q ss_pred cceeeecccCc----hHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEE
Q psy9514 369 NLFGVQLCGNN----PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPIT 442 (611)
Q Consensus 369 ~~~ivQi~g~~----p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~Pvt 442 (611)
.++++.+..++ .+...+.++.+. ..|+|+|.+.. |. +.....+.+.+.+.++.+.+.+ ++|+.
T Consensus 49 ~~v~~~v~~~~~~~~~~~~~~~a~~a~-~~Gad~i~v~~--~~--------~~~~~~~~~~~~~~~~~i~~~~~~~~pv~ 117 (201)
T cd00945 49 VPVIVVVGFPTGLTTTEVKVAEVEEAI-DLGADEIDVVI--NI--------GSLKEGDWEEVLEEIAAVVEAADGGLPLK 117 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHH-HcCCCEEEEec--cH--------HHHhCCCHHHHHHHHHHHHHHhcCCceEE
Confidence 56677787777 677777777775 35999999842 21 1111125788889899998874 89999
Q ss_pred EEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEe
Q psy9514 443 VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 443 VKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~iti 522 (611)
+....+.....+...++++.+.+.|+++|..+...
T Consensus 118 iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~--------------------------------------------- 152 (201)
T cd00945 118 VILETRGLKTADEIAKAARIAAEAGADFIKTSTGF--------------------------------------------- 152 (201)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCC---------------------------------------------
Confidence 99887654233456677777788999998765432
Q ss_pred ccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.+..++..+.++.+... ++||+..||+.+++.+.+.+..| ++++++|
T Consensus 153 --------~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~G--a~g~~~g 201 (201)
T cd00945 153 --------GGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAG--ADGIGTS 201 (201)
T ss_pred --------CCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhc--cceeecC
Confidence 122335566666655443 67999999999999999999997 9999876
No 108
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=98.22 E-value=1.1e-05 Score=88.15 Aligned_cols=117 Identities=21% Similarity=0.188 Sum_probs=80.6
Q ss_pred cChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcc
Q psy9514 421 QRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499 (611)
Q Consensus 421 ~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~ 499 (611)
..++-+.++++.+++.++ +||.+|+-.+. ...++++.++..|+|+|+|.|.-..... +.|.+
T Consensus 196 ~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~-----~~~~~a~~~~~~g~D~I~VsG~~Ggtg~---~~~~~--------- 258 (392)
T cd02808 196 YSIEDLAQLIEDLREATGGKPIGVKLVAGH-----GEGDIAAGVAAAGADFITIDGAEGGTGA---APLTF--------- 258 (392)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEEEECCCC-----CHHHHHHHHHHcCCCEEEEeCCCCCCCC---Ccccc---------
Confidence 456778999999999997 99999976542 2346777888888999999987432220 00000
Q ss_pred cCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHH---Hhh---CCCCcEEEecCCCCHHHHHHHHHcCCC
Q psy9514 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC---AQL---CSPAPLYGNGDILSYEDYTESLKKSPS 573 (611)
Q Consensus 500 ~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~---~k~---~~~iPVIgnGgI~s~eda~~~l~~G~~ 573 (611)
+. ..+.+....+.++ +.. ..++|||+.|+|.|..|+.+++..|
T Consensus 259 ------------~~-----------------~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLG-- 307 (392)
T cd02808 259 ------------ID-----------------HVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALG-- 307 (392)
T ss_pred ------------cc-----------------cCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcC--
Confidence 00 1111222222222 221 1369999999999999999999998
Q ss_pred ccEEEEcHHhhh
Q psy9514 574 ISGVMIGRGALI 585 (611)
Q Consensus 574 aD~VmIGRgaL~ 585 (611)
||+|.+||++|.
T Consensus 308 Ad~V~ig~~~l~ 319 (392)
T cd02808 308 ADAVGIGTAALI 319 (392)
T ss_pred CCeeeechHHHH
Confidence 999999999994
No 109
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=98.19 E-value=2.1e-05 Score=80.56 Aligned_cols=74 Identities=18% Similarity=0.211 Sum_probs=61.5
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHc--CCCccEEEEcHHhh
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKK--SPSISGVMIGRGAL 584 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~--G~~aD~VmIGRgaL 584 (611)
+++..+.+. +..+.++...++|+..+ +|++.++++++. +++|||++|||.|.+|+.++.+. + +.++.+|++++
T Consensus 162 e~~~~~~~~-~~~il~TdI~rDGtl~G-~dlel~~~l~~~-~~ipVIASGGv~s~eDi~~l~~~~~g--~~~aIvG~Alf 236 (253)
T TIGR02129 162 ETLEELSKY-CDEFLIHAADVEGLCKG-IDEELVSKLGEW-SPIPITYAGGAKSIDDLDLVDELSKG--KVDLTIGSALD 236 (253)
T ss_pred HHHHHHHhh-CCEEEEeeecccCcccc-CCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHHhcCC--CCcEEeeehHH
Confidence 556667777 88999999999997654 689999998776 69999999999999999988443 4 67799999987
Q ss_pred h
Q psy9514 585 I 585 (611)
Q Consensus 585 ~ 585 (611)
.
T Consensus 237 ~ 237 (253)
T TIGR02129 237 I 237 (253)
T ss_pred H
Confidence 5
No 110
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=98.18 E-value=6.5e-05 Score=77.50 Aligned_cols=187 Identities=12% Similarity=0.135 Sum_probs=114.6
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc------ccccccc--ChHHHHHHHHHHHhh-cCCCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMNEV-SSLPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~~~-~~~PvtVKiR~ 447 (611)
+.+...+++..+. ..|+|.|||- ++=| .-+| +--+|.+ +.+.+.++++++++. .++|+..-+-.
T Consensus 22 ~~~~~~~~~~~l~-~~Gad~iElGiPfsDP----~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~ 96 (256)
T TIGR00262 22 TLETSLEIIKTLI-EAGADALELGVPFSDP----LADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYY 96 (256)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCCCCC----CCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 4456666666654 4599999984 3334 2222 2222222 356778889999876 68887633221
Q ss_pred cccC-CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhc--
Q psy9514 448 GIHK-DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDW-- 515 (611)
Q Consensus 448 g~~~-~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~-- 515 (611)
. . -..-..++++.+.++|++.|.+|.=.. +...++...+++..... .+-+..+.+.
T Consensus 97 N--pi~~~G~e~f~~~~~~aGvdgviipDlp~----------ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~ 164 (256)
T TIGR00262 97 N--LIFRKGVEEFYAKCKEVGVDGVLVADLPL----------EESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQ 164 (256)
T ss_pred c--HHhhhhHHHHHHHHHHcCCCEEEECCCCh----------HHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCC
Confidence 1 1 001235789999999999999996432 23344444444433221 1112222222
Q ss_pred CCceE-EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 516 GASLI-TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 516 G~~~i-tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
|.-++ ++.|.|....-..+...+.++++.+. .+.||+..|||+|++++.++++.| +|+|++|.+++.
T Consensus 165 gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~-~~~pi~vgfGI~~~e~~~~~~~~G--ADgvVvGSaiv~ 232 (256)
T TIGR00262 165 GFVYLVSRAGVTGARNRAASALNELVKRLKAY-SAKPVLVGFGISKPEQVKQAIDAG--ADGVIVGSAIVK 232 (256)
T ss_pred CCEEEEECCCCCCCcccCChhHHHHHHHHHhh-cCCCEEEeCCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 23333 44566654322233456778887664 578999999999999999999987 999999988763
No 111
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=98.16 E-value=6.4e-05 Score=76.43 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=48.0
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
...+++.+.++++. .++||++.|||.|.+|+.+++..| +++|+||++++..=.-+.+
T Consensus 174 ~g~~~~~~~~i~~~-~~ipvi~~GGi~s~edi~~l~~~G--~~~vivGsal~~g~~~~~~ 230 (233)
T cd04723 174 QGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLG--ASGALVASALHDGGLTLED 230 (233)
T ss_pred CCcCHHHHHHHHHh-cCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEehHHHcCCCCHHH
Confidence 44678888888776 589999999999999999999987 9999999999887433433
No 112
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=98.16 E-value=9.5e-05 Score=80.27 Aligned_cols=250 Identities=14% Similarity=0.077 Sum_probs=134.0
Q ss_pred ccccCeeecCcEEeccCCC------CCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCC
Q psy9514 250 SEKKKIDWQGKLYLSPLTT------VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323 (611)
Q Consensus 250 ~ei~~l~l~nrivlAPMt~------~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~ 323 (611)
.++-+..+.=++++||+.. .+.+..-+.|.+.|+-.++|-+.... + .-+..+..+.++..||.-.
T Consensus 77 t~llG~~~~~P~~iAP~g~~~l~~p~gE~a~ArAA~~~gi~~~lSt~ss~s-l--------EeIa~~~~~~~~wfQlY~~ 147 (383)
T cd03332 77 VELFGRTLAAPLLLAPIGVQELFHPDAELATARAAAELGVPYILSTASSSS-I--------EDVAAAAGDAPRWFQLYWP 147 (383)
T ss_pred eeeCCccccccceechHHHHHhcCCcHHHHHHHHHHHcCCCeeecCCCCCC-H--------HHHHhhcCCCCcEEEeeCC
Confidence 3455677778899999863 35677888889999999888776532 1 1111222234678897654
Q ss_pred -ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccccccee-eecc-cCchHHHH-HHHHHHHHhcccc-e
Q psy9514 324 -NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG-VQLC-GNNPYVLT-KCTQLLEEQMVVD-F 398 (611)
Q Consensus 324 -~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~i-vQi~-g~~p~~~~-~aA~~l~~~~g~D-~ 398 (611)
+........+..+. .++..+-+..-.|+.-. ..++..-. .... ...+..+. ...-.. .+. .
T Consensus 148 ~dr~~~~~ll~RA~~-aG~~alvlTVD~pv~g~---------Rerd~r~~~~p~~~~~~~~~~~~~~~~~~----~~~~~ 213 (383)
T cd03332 148 KDDDLTESLLRRAEK-AGYRVLVVTLDTWSLGW---------RPRDLDLGYLPFLRGIGIANYFSDPVFRK----KLAEP 213 (383)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEeCCCCCCCC---------chhhhhcCCCCCccccchhhhhccchhhh----ccccC
Confidence 33333333333333 34555545444443210 00010000 0000 00000000 000000 000 0
Q ss_pred EEeccCCCccceeccccccccc---cChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 399 VDVNLGCPIEFIYKQGSGSGLL---QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 399 IELN~gCP~~~v~~~g~GsaLl---~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
..-|..-+ ....+.++.++ -++.+--+-++.+++.++.||.+| |. ...+-++.+.+.|+|+|.|++
T Consensus 214 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~tW~~i~~lr~~~~~pvivK---gV-----~~~~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 214 VGEDPEAP---PPMEAAVARFVSVFSGPSLTWEDLAFLREWTDLPIVLK---GI-----LHPDDARRAVEAGVDGVVVSN 282 (383)
T ss_pred CCCCcccc---cccchhHHHHHHhcCCCCCCHHHHHHHHHhcCCCEEEe---cC-----CCHHHHHHHHHCCCCEEEEcC
Confidence 00000000 00000111111 133333466788888889999999 32 123557788899999999976
Q ss_pred cccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEE
Q psy9514 476 RTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYG 554 (611)
Q Consensus 476 R~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIg 554 (611)
.-.-+. -..++....+.++.+... .+|||+
T Consensus 283 hGGr~~-------------------------------------------------d~~~~t~~~L~ei~~~~~~~~~vi~ 313 (383)
T cd03332 283 HGGRQV-------------------------------------------------DGSIAALDALPEIVEAVGDRLTVLF 313 (383)
T ss_pred CCCcCC-------------------------------------------------CCCcCHHHHHHHHHHHhcCCCeEEE
Confidence 432111 112334455666655443 599999
Q ss_pred ecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 555 NGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 555 nGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.|||.+..|+.+++..| +|+|+|||.+|
T Consensus 314 dGGIr~G~Dv~KALaLG--A~~v~iGr~~l 341 (383)
T cd03332 314 DSGVRTGADIMKALALG--AKAVLIGRPYA 341 (383)
T ss_pred eCCcCcHHHHHHHHHcC--CCEEEEcHHHH
Confidence 99999999999999998 99999999998
No 113
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=98.13 E-value=6.1e-05 Score=79.73 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=105.8
Q ss_pred cccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEE
Q psy9514 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKT 445 (611)
Q Consensus 367 ~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKi 445 (611)
...++..++++.+++.+.+.++.+.+ .||+.|.||+|.. ++...++|++|+++++ .++.+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gf~~iKik~g~~----------------~~~d~~~v~~lr~~~g~~~l~vD~ 184 (316)
T cd03319 122 RPLETDYTISIDTPEAMAAAAKKAAK-RGFPLLKIKLGGD----------------LEDDIERIRAIREAAPDARLRVDA 184 (316)
T ss_pred CCceeEEEEeCCCHHHHHHHHHHHHH-cCCCEEEEEeCCC----------------hhhHHHHHHHHHHhCCCCeEEEeC
Confidence 34567778888888888877777653 5999999997632 3445788899998875 6777777
Q ss_pred EccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 446 R~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
+.+++. +.+.++++.|++.++.+| ++.
T Consensus 185 n~~~~~--~~A~~~~~~l~~~~l~~i-------EeP-------------------------------------------- 211 (316)
T cd03319 185 NQGWTP--EEAVELLRELAELGVELI-------EQP-------------------------------------------- 211 (316)
T ss_pred CCCcCH--HHHHHHHHHHHhcCCCEE-------ECC--------------------------------------------
Confidence 766654 679999999999888776 222
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
+ .+.+|+.++++.+. .++||++++.+++++++.++++.+ .+|.|++--.
T Consensus 212 -----~-~~~d~~~~~~L~~~-~~ipIa~~E~~~~~~~~~~~~~~~-~~d~v~~~~~ 260 (316)
T cd03319 212 -----V-PAGDDDGLAYLRDK-SPLPIMADESCFSAADAARLAGGG-AYDGINIKLM 260 (316)
T ss_pred -----C-CCCCHHHHHHHHhc-CCCCEEEeCCCCCHHHHHHHHhcC-CCCEEEEecc
Confidence 2 23466777776554 589999999999999999999987 7999988533
No 114
>PLN02979 glycolate oxidase
Probab=98.11 E-value=0.00016 Score=77.70 Aligned_cols=100 Identities=21% Similarity=0.261 Sum_probs=74.0
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhh
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~ 506 (611)
=+-|+.+++.++.||.||--+ ..+-+..+.+.|+|+|.|+|.-.-|. ||
T Consensus 212 W~dl~wlr~~~~~PvivKgV~--------~~~dA~~a~~~Gvd~I~VsnhGGrql-----d~------------------ 260 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVL--------TGEDARIAIQAGAAGIIVSNHGARQL-----DY------------------ 260 (366)
T ss_pred HHHHHHHHhccCCCEEeecCC--------CHHHHHHHHhcCCCEEEECCCCcCCC-----CC------------------
Confidence 355788999999999999331 13557788999999999987532221 11
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.++....+.++.+.. ..+|||+.|||.+..|+.+++..| +|+|+|||.+|.
T Consensus 261 --------------------------~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALG--AdaV~iGrp~L~ 312 (366)
T PLN02979 261 --------------------------VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVF 312 (366)
T ss_pred --------------------------chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 122334455554432 369999999999999999999998 999999998884
No 115
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=98.06 E-value=5.2e-05 Score=77.14 Aligned_cols=147 Identities=9% Similarity=0.066 Sum_probs=98.5
Q ss_pred eeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHH-hhcCCCEEEEEEcc
Q psy9514 372 GVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMN-EVSSLPITVKTRTG 448 (611)
Q Consensus 372 ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~-~~~~~PvtVKiR~g 448 (611)
.+|+.|. +.+++.++.... +.+--.|+....+|+++.++.+... ..+ =+++-+|-+
T Consensus 75 ~v~vGGGIrs~e~~~~~l~~G-------------------a~kvvigt~a~~~p~~~~~~~~~~g~~~i--vvslD~~~~ 133 (232)
T PRK13586 75 WIQVGGGIRDIEKAKRLLSLD-------------------VNALVFSTIVFTNFNLFHDIVREIGSNRV--LVSIDYDNT 133 (232)
T ss_pred CEEEeCCcCCHHHHHHHHHCC-------------------CCEEEECchhhCCHHHHHHHHHHhCCCCE--EEEEEcCCC
Confidence 6788777 667766664432 2223458888899999988877763 211 111221100
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
..|.++|+.. . .....+++..+.+.|+..+.++...++
T Consensus 134 --------------------~~v~~~gw~~-~---------------------~~~~~e~~~~l~~~g~~~ii~tdI~~d 171 (232)
T PRK13586 134 --------------------KRVLIRGWKE-K---------------------SMEVIDGIKKVNELELLGIIFTYISNE 171 (232)
T ss_pred --------------------CEEEccCCee-C---------------------CCCHHHHHHHHHhcCCCEEEEeccccc
Confidence 0244555432 0 112335566777788888888888888
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
|+..+ .+++.++.+.+. ..|+|+.|||.|.+|+.++...| +|+|+||++++..
T Consensus 172 Gt~~G-~d~el~~~~~~~--~~~viasGGv~s~~Dl~~l~~~G--~~gvivg~Aly~g 224 (232)
T PRK13586 172 GTTKG-IDYNVKDYARLI--RGLKEYAGGVSSDADLEYLKNVG--FDYIIVGMAFYLG 224 (232)
T ss_pred ccCcC-cCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCC--CCEEEEehhhhcC
Confidence 87655 688888887653 45699999999999999999876 9999999999853
No 116
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.05 E-value=7.1e-05 Score=83.26 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=91.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~ 457 (611)
.++.+.++..++ .+|+|.|+|++++.. ...+.+.++.+++.. +.||.++-- .+.
T Consensus 222 ~~~~~~r~~~L~--~aG~d~I~vd~a~g~---------------~~~~~~~i~~i~~~~~~~~vi~G~v--------~t~ 276 (450)
T TIGR01302 222 REFDKERAEALV--KAGVDVIVIDSSHGH---------------SIYVIDSIKEIKKTYPDLDIIAGNV--------ATA 276 (450)
T ss_pred chhHHHHHHHHH--HhCCCEEEEECCCCc---------------HhHHHHHHHHHHHhCCCCCEEEEeC--------CCH
Confidence 345556665555 359999999988751 134678888898874 688888522 123
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~ 537 (611)
+-++.+.++|+|+|-|.-.......| +.-.-.+.+.+
T Consensus 277 ~~a~~l~~aGad~i~vg~g~G~~~~t-------------------------------------------~~~~~~g~p~~ 313 (450)
T TIGR01302 277 EQAKALIDAGADGLRVGIGPGSICTT-------------------------------------------RIVAGVGVPQI 313 (450)
T ss_pred HHHHHHHHhCCCEEEECCCCCcCCcc-------------------------------------------ceecCCCccHH
Confidence 55778889999999764221100000 00001122333
Q ss_pred HHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 538 DYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 538 ~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
..+.++++.. .++|||+.|||.++.|+.+++..| ||+||+|+.+..-.+-+
T Consensus 314 ~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~a~~~e~p 366 (450)
T TIGR01302 314 TAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLLAGTTESP 366 (450)
T ss_pred HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhcCCcCC
Confidence 4444443321 479999999999999999999998 99999996655433333
No 117
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=98.04 E-value=0.00038 Score=68.56 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=111.2
Q ss_pred CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhh-cCCCEEEEEEccccCCchHH
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~~~~~~~a 456 (611)
-+++.+.++++.+.+. ++.||++. |. .. .+| .+.++.+++. .+.|+.+-+.+... .
T Consensus 10 ~~~~~~~~~~~~l~~~--i~~ieig~--~~--~~--~~g----------~~~i~~i~~~~~~~~i~~~~~v~~~---~-- 66 (202)
T cd04726 10 LDLEEALELAKKVPDG--VDIIEAGT--PL--IK--SEG----------MEAVRALREAFPDKIIVADLKTADA---G-- 66 (202)
T ss_pred CCHHHHHHHHHHhhhc--CCEEEcCC--HH--HH--HhC----------HHHHHHHHHHCCCCEEEEEEEeccc---c--
Confidence 3677888888888653 89999942 21 11 112 4667777765 36787764443211 1
Q ss_pred HHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhcCCceEEec-ccc
Q psy9514 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDWGASLITLH-GRT 526 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~G~~~itih-grt 526 (611)
..+++.+.++|++.|++|+.... ..+.++.+.+++..... ......+...|++.+.++ +++
T Consensus 67 ~~~~~~~~~aGad~i~~h~~~~~---------~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~ 137 (202)
T cd04726 67 ALEAEMAFKAGADIVTVLGAAPL---------STIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGID 137 (202)
T ss_pred HHHHHHHHhcCCCEEEEEeeCCH---------HHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCccc
Confidence 24568889999999999987522 11223333333221111 111112455689998774 332
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
.. ........+.++++.+. .++||+..|||+ ++.+.++++.| +|+|.+|+++...+.+-+.+
T Consensus 138 ~~-~~~~~~~~~~i~~~~~~-~~~~i~~~GGI~-~~~i~~~~~~G--ad~vvvGsai~~~~d~~~~~ 199 (202)
T cd04726 138 AQ-AAGGWWPEDDLKKVKKL-LGVKVAVAGGIT-PDTLPEFKKAG--ADIVIVGRAITGAADPAEAA 199 (202)
T ss_pred cc-ccCCCCCHHHHHHHHhh-cCCCEEEECCcC-HHHHHHHHhcC--CCEEEEeehhcCCCCHHHHH
Confidence 21 11123445677776544 579999999995 99999999997 99999999987666654443
No 118
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=98.04 E-value=0.0002 Score=70.77 Aligned_cols=191 Identities=14% Similarity=0.143 Sum_probs=107.2
Q ss_pred eeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 372 ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
.+.+..-++..+.+.++.+. ..|++.|+|...- + .+..+..+-.++++.+++.++.|+.|.+-+.
T Consensus 3 ~~~~~~~d~~~~~~~~~~~~-~~G~~~i~l~~~d--------~---~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~--- 67 (211)
T cd00429 3 APSILSADFANLGEELKRLE-EAGADWIHIDVMD--------G---HFVPNLTFGPPVVKALRKHTDLPLDVHLMVE--- 67 (211)
T ss_pred eeeeecCCHHHHHHHHHHHH-HcCCCEEEEeccc--------C---CCCCccccCHHHHHHHHhhCCCcEEEEeeeC---
Confidence 44566667777777777765 4589999884211 0 0001111223566777665556665554432
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---------hhhcchhhHhcCCceEEe
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI---------IHNFMPKFRDWGASLITL 522 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~---------~~~~~~~l~~~G~~~iti 522 (611)
+..++++.+.++|++.|+||+...... .++...++..... ....+..+. .+++.+.+
T Consensus 68 ---d~~~~~~~~~~~g~dgv~vh~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~d~i~~ 133 (211)
T cd00429 68 ---NPERYIEAFAKAGADIITFHAEATDHL----------HRTIQLIKELGMKAGVALNPGTPVEVLEPYL-DEVDLVLV 133 (211)
T ss_pred ---CHHHHHHHHHHcCCCEEEECccchhhH----------HHHHHHHHHCCCeEEEEecCCCCHHHHHHHH-hhCCEEEE
Confidence 123567777899999999999753111 1111212111111 111122222 23677744
Q ss_pred ccccc--cccccCCccHHHHHHHHhhCC----CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 523 HGRTR--EQRYTKQADWDYIEKCAQLCS----PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 523 hgrtr--~g~~~~~a~~~~i~~~~k~~~----~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+... .+.......++.+.++.+... ++||+.-|||+ ++++.++++.| +|+|++|++++..+.....++
T Consensus 134 ~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~g--ad~iivgsai~~~~~~~~~~~ 208 (211)
T cd00429 134 MSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAG--ADVLVAGSALFGSDDYAEAIK 208 (211)
T ss_pred EEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEECHHHhCCCCHHHHHH
Confidence 33321 111111122344444433322 48999999997 59999999987 999999999998887665554
No 119
>KOG2334|consensus
Probab=98.03 E-value=1.2e-05 Score=86.15 Aligned_cols=131 Identities=18% Similarity=0.243 Sum_probs=81.9
Q ss_pred ccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccc
Q psy9514 402 NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481 (611)
Q Consensus 402 N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr 481 (611)
|.+||.......+.+..++-.+-.+..+.+..++.++.|+ .|.|+-.++ .++..+++.+++.+ ++.+|+|..-.+
T Consensus 293 ~~~~p~~~~~~~~~~~~~i~k~~~i~d~~~~~~~el~~~~-~k~Rl~~~~--~d~~~~~~~le~~~--~l~i~~r~~f~r 367 (477)
T KOG2334|consen 293 QEGCPRGKRIQAAQTVAQICKAFEIEDIYATLKRELDTPV-CKKRLLVSP--ADTVNLAERLEDLS--ALAIHGRKIFDR 367 (477)
T ss_pred hccCchhhHhhcchhHHHHHHHhcchhHHHhhHHhhcccc-ccceeeeCc--chhhhHhhhHHhcc--chhhhhcccccc
Confidence 4455655555555555555555556666666666666666 666755433 45567777777776 455677664445
Q ss_pred cccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCH
Q psy9514 482 YTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY 561 (611)
Q Consensus 482 ~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~ 561 (611)
.+.++.| +.++.++... .++++.||.+++.
T Consensus 368 ~~~pa~~-------------------------------------------------~~~k~~l~~~-~~~~~~~~~~ye~ 397 (477)
T KOG2334|consen 368 PTDPAKW-------------------------------------------------DTPKMVLADL-CVKTKANGPVYET 397 (477)
T ss_pred cCCCcCC-------------------------------------------------CCHHHHHHHh-hhhhcCCCcchhh
Confidence 4444444 4444444333 6899999999887
Q ss_pred HHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 562 EDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 562 eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
.+- ...+ +.+||.+||...+-.+|..
T Consensus 398 ~~~---~d~l--f~si~~~~~~~~~ssi~~~ 423 (477)
T KOG2334|consen 398 VQR---TDKL--FSSIATARGQKYNSSIWSP 423 (477)
T ss_pred hhh---hhhh--hHHHhhhhhhhhhccccCc
Confidence 775 3343 7789999999887766543
No 120
>PLN02535 glycolate oxidase
Probab=98.03 E-value=2.6e-05 Score=84.00 Aligned_cols=107 Identities=20% Similarity=0.233 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~ 502 (611)
+.+--+-++.++...+.||.||--+. .+-++.+.++|+|+|.|+|.-.-+. ||
T Consensus 208 ~~~tW~~i~~lr~~~~~PvivKgV~~--------~~dA~~a~~~GvD~I~vsn~GGr~~-----d~-------------- 260 (364)
T PLN02535 208 ASLSWKDIEWLRSITNLPILIKGVLT--------REDAIKAVEVGVAGIIVSNHGARQL-----DY-------------- 260 (364)
T ss_pred CCCCHHHHHHHHhccCCCEEEecCCC--------HHHHHHHHhcCCCEEEEeCCCcCCC-----CC--------------
Confidence 34445667888888899999992211 2347788899999999976432111 11
Q ss_pred hhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.++....+.++.+.. ..+|||+.|||.+..|+.++|..| +|+|+|||
T Consensus 261 ------------------------------~~~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalG--A~aV~vGr 308 (364)
T PLN02535 261 ------------------------------SPATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALG--AQAVLVGR 308 (364)
T ss_pred ------------------------------ChHHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcC--CCEEEECH
Confidence 122234555555443 369999999999999999999998 99999999
Q ss_pred HhhhCCc
Q psy9514 582 GALIKPW 588 (611)
Q Consensus 582 gaL~dP~ 588 (611)
++|..+.
T Consensus 309 ~~l~~l~ 315 (364)
T PLN02535 309 PVIYGLA 315 (364)
T ss_pred HHHhhhh
Confidence 9998765
No 121
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.02 E-value=0.0001 Score=74.92 Aligned_cols=138 Identities=19% Similarity=0.154 Sum_probs=96.0
Q ss_pred CCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc--------------ccceeeeccc
Q psy9514 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR--------------ANLFGVQLCG 377 (611)
Q Consensus 312 ~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~--------------~~~~ivQi~g 377 (611)
+..++++|+.++.|+.+..+++.+.+ .+++||||+|||++.....+.+.+|+.+ ..|+.+-+..
T Consensus 66 ~~~~vivnv~~~~~ee~~~~a~~v~~--~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~ 143 (231)
T TIGR00736 66 SRALVSVNVRFVDLEEAYDVLLTIAE--HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRG 143 (231)
T ss_pred hcCCEEEEEecCCHHHHHHHHHHHhc--CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 45689999999999999999999877 4899999999999987777777777653 3577777776
Q ss_pred Cc-hHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchH
Q psy9514 378 NN-PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNI 455 (611)
Q Consensus 378 ~~-p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~ 455 (611)
+. .....+.|+.+. .+|+|+|=|+..=| |. +..-.++|+.+++.++ +||+. .|. ...
T Consensus 144 ~~~~~~~~~~a~~l~-~aGad~i~Vd~~~~---------g~-----~~a~~~~I~~i~~~~~~ipIIg---NGg---I~s 202 (231)
T TIGR00736 144 NCIPLDELIDALNLV-DDGFDGIHVDAMYP---------GK-----PYADMDLLKILSEEFNDKIIIG---NNS---IDD 202 (231)
T ss_pred CCCcchHHHHHHHHH-HcCCCEEEEeeCCC---------CC-----chhhHHHHHHHHHhcCCCcEEE---ECC---cCC
Confidence 53 345566666664 56999998863111 11 1133567777887774 88655 232 222
Q ss_pred HHHHHHHHHHcCCCEEEE
Q psy9514 456 IHNFMPKFRDWGASLITL 473 (611)
Q Consensus 456 a~~la~~l~~aGvd~Itv 473 (611)
.....+.+. +|+++|.|
T Consensus 203 ~eda~e~l~-~GAd~Vmv 219 (231)
T TIGR00736 203 IESAKEMLK-AGADFVSV 219 (231)
T ss_pred HHHHHHHHH-hCCCeEEE
Confidence 334444454 79999876
No 122
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=98.02 E-value=0.00037 Score=74.52 Aligned_cols=49 Identities=16% Similarity=0.244 Sum_probs=36.8
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
+..+.++... .++|||+.|||.+.+++..++..| +|+|++|+.+|.=++
T Consensus 179 ~~L~~~v~~~-~~iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrFl~t~E 227 (330)
T PF03060_consen 179 FSLLPQVRDA-VDIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEE 227 (330)
T ss_dssp HHHHHHHHHH--SS-EEEESS--SHHHHHHHHHCT---SEEEESHHHHTSTT
T ss_pred eeHHHHHhhh-cCCcEEEecCcCCHHHHHHHHHcC--CCEeecCCeEEeccc
Confidence 4555665554 579999999999999999999998 999999999998553
No 123
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=98.02 E-value=0.0004 Score=68.82 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=111.4
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNI 455 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~ 455 (611)
..+++++.+.++.+ ..|++.||+.... . ..+-.++++.+++.. +..+.+-+.+- +...
T Consensus 8 ~~~~~~a~~~~~~l--~~~v~~iev~~~l----~------------~~~g~~~i~~l~~~~~~~~i~~d~k~~---d~~~ 66 (206)
T TIGR03128 8 LLDIEEALELAEKV--ADYVDIIEIGTPL----I------------KNEGIEAVKEMKEAFPDRKVLADLKTM---DAGE 66 (206)
T ss_pred CCCHHHHHHHHHHc--ccCeeEEEeCCHH----H------------HHhCHHHHHHHHHHCCCCEEEEEEeec---cchH
Confidence 34778888888888 3589999983111 0 111246677777653 34444443321 1111
Q ss_pred HHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh----------hhcchhhHhcCCceEEeccc
Q psy9514 456 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII----------HNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 456 a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~----------~~~~~~l~~~G~~~itihgr 525 (611)
..++.+.++|+++|++|+-+.. ..+.++.+.+++..... .+.+..+.+.|++.+.++..
T Consensus 67 --~~~~~~~~~Gad~i~vh~~~~~---------~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg 135 (206)
T TIGR03128 67 --YEAEQAFAAGADIVTVLGVADD---------ATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHTG 135 (206)
T ss_pred --HHHHHHHHcCCCEEEEeccCCH---------HHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcCC
Confidence 2478889999999999986521 12233333333322221 12234456779999988643
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
+..+. ..+..++.+.++.+....++|...||| +++.+.++++.| +|+|.+||+++..+..-+.+
T Consensus 136 ~~~~~-~~~~~~~~i~~l~~~~~~~~i~v~GGI-~~~n~~~~~~~G--a~~v~vGsai~~~~d~~~~~ 199 (206)
T TIGR03128 136 LDEQA-KGQNPFEDLQTILKLVKEARVAVAGGI-NLDTIPDVIKLG--PDIVIVGGAITKAADPAEAA 199 (206)
T ss_pred cCccc-CCCCCHHHHHHHHHhcCCCcEEEECCc-CHHHHHHHHHcC--CCEEEEeehhcCCCCHHHHH
Confidence 32222 233456677777665545566669999 899999999987 99999999988766644433
No 124
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=98.01 E-value=0.00027 Score=76.34 Aligned_cols=99 Identities=21% Similarity=0.273 Sum_probs=73.5
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhh
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~ 507 (611)
+-++.+++..+.||.||=-+ ..+-++++.+.|+++|.|+|.-.-|. ||
T Consensus 214 ~di~wlr~~~~~PiivKgV~--------~~~dA~~a~~~Gvd~I~VsnhGGrql-----d~------------------- 261 (367)
T PLN02493 214 KDVQWLQTITKLPILVKGVL--------TGEDARIAIQAGAAGIIVSNHGARQL-----DY------------------- 261 (367)
T ss_pred HHHHHHHhccCCCEEeecCC--------CHHHHHHHHHcCCCEEEECCCCCCCC-----CC-------------------
Confidence 45788888899999999321 23557788999999999987532221 11
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.++....+.++.+.. ..+|||+.|||.+..|+.+++..| +|+|+|||.+|.
T Consensus 262 -------------------------~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALG--A~aV~iGr~~l~ 313 (367)
T PLN02493 262 -------------------------VPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALG--ASGIFIGRPVVF 313 (367)
T ss_pred -------------------------chhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 122334555554432 369999999999999999999998 999999999884
No 125
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=98.00 E-value=3.6e-05 Score=77.84 Aligned_cols=88 Identities=22% Similarity=0.187 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
+..++++.+++.|++.|+++...+.. ....
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~--------------------------------------------------~~~~ 60 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK--------------------------------------------------RGRE 60 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc--------------------------------------------------cCCC
Confidence 45678888888888888887665421 2334
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++.+.++++. .++||+..|||.|.+++.+++..| +|.|++|++++.+|.++.++.+
T Consensus 61 ~n~~~~~~i~~~-~~~pv~~~ggi~~~~d~~~~~~~G--~~~vilg~~~l~~~~~~~~~~~ 118 (232)
T TIGR03572 61 PLFELISNLAEE-CFMPLTVGGGIRSLEDAKKLLSLG--ADKVSINTAALENPDLIEEAAR 118 (232)
T ss_pred CCHHHHHHHHHh-CCCCEEEECCCCCHHHHHHHHHcC--CCEEEEChhHhcCHHHHHHHHH
Confidence 678888888776 489999999999999999998876 9999999999999999999876
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=97.99 E-value=0.0003 Score=72.02 Aligned_cols=187 Identities=13% Similarity=0.145 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccc------ccccccc--ChHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
+.+.+.+.++.+. ..|+|.|||+. |++.-.-+| .--+|.+ +..+..++++.+++...+|+.+-+-..
T Consensus 12 ~~~~~~~~~~~l~-~~Gad~iel~i--PfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n-- 86 (242)
T cd04724 12 DLETTLEILKALV-EAGADIIELGI--PFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN-- 86 (242)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECC--CCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC--
Confidence 4456777777775 46999999996 543333333 0111111 234788899999987788865432211
Q ss_pred CCchH-HHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---------hhhcchhhHhcCCceE
Q psy9514 451 KDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI---------IHNFMPKFRDWGASLI 520 (611)
Q Consensus 451 ~~~~~-a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~---------~~~~~~~l~~~G~~~i 520 (611)
.-... ..++++.+.++|++.|+++.=. ++.+..+.+.+++.... ..+.+..+.+...+.+
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~giiipDl~----------~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVDGLIIPDLP----------PEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCcEEEECCCC----------HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 10011 3578999999999999995322 12233444444443322 1222333444334444
Q ss_pred ---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 521 ---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 521 ---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
++.|.|..+........+.++++.+. .++||+.-|||++++++.++++. +|+|.+|.+++
T Consensus 157 y~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~vggGI~~~e~~~~~~~~---ADgvVvGSaiv 219 (242)
T cd04724 157 YYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAVGFGISTPEQAAEVAKY---ADGVIVGSALV 219 (242)
T ss_pred EEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEEEccCCCHHHHHHHHcc---CCEEEECHHHH
Confidence 44555554332233345677776654 68999999999999999998764 89999997654
No 127
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=97.96 E-value=0.00055 Score=72.53 Aligned_cols=138 Identities=13% Similarity=0.142 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~ 457 (611)
.++++.++.++++..+++|.|=|..+|-+ ...+.++|+.+++.. +.+|++. + -.+.
T Consensus 106 ~~~d~er~~~L~~~~~g~D~iviD~AhGh---------------s~~~i~~ik~ik~~~P~~~vIaG-------N-V~T~ 162 (346)
T PRK05096 106 SDADFEKTKQILALSPALNFICIDVANGY---------------SEHFVQFVAKAREAWPDKTICAG-------N-VVTG 162 (346)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCc---------------HHHHHHHHHHHHHhCCCCcEEEe-------c-ccCH
Confidence 34555555555543356777666655542 245678889999876 4666553 1 1234
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~ 537 (611)
+.++.|.++|+|+|-|--+...--. |+.-.-.+-+-+
T Consensus 163 e~a~~Li~aGAD~vKVGIGpGSiCt-------------------------------------------Tr~vtGvG~PQl 199 (346)
T PRK05096 163 EMVEELILSGADIVKVGIGPGSVCT-------------------------------------------TRVKTGVGYPQL 199 (346)
T ss_pred HHHHHHHHcCCCEEEEcccCCcccc-------------------------------------------CccccccChhHH
Confidence 5778899999999877443321110 000001122234
Q ss_pred HHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 538 DYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 538 ~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..+.+|++.. .++|||+-|||.+.-|+.++|..| +|+||+|. +|+
T Consensus 200 tAV~~~a~~a~~~gvpiIADGGi~~sGDI~KAlaaG--Ad~VMlGs-llA 246 (346)
T PRK05096 200 SAVIECADAAHGLGGQIVSDGGCTVPGDVAKAFGGG--ADFVMLGG-MLA 246 (346)
T ss_pred HHHHHHHHHHHHcCCCEEecCCcccccHHHHHHHcC--CCEEEeCh-hhc
Confidence 4444444322 478999999999999999999998 99999995 444
No 128
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.96 E-value=5.9e-05 Score=76.16 Aligned_cols=60 Identities=27% Similarity=0.360 Sum_probs=53.1
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
..+++.+.++++. +.+||+..|+|.|.+|+.+++..| ||.|++|+.++.+|.++.++.+.
T Consensus 60 ~~~~~~i~~i~~~-~~~pv~~~GGI~~~ed~~~~~~~G--a~~vilg~~~l~~~~~l~ei~~~ 119 (233)
T PRK00748 60 PVNLELIEAIVKA-VDIPVQVGGGIRSLETVEALLDAG--VSRVIIGTAAVKNPELVKEACKK 119 (233)
T ss_pred cccHHHHHHHHHH-CCCCEEEcCCcCCHHHHHHHHHcC--CCEEEECchHHhCHHHHHHHHHH
Confidence 3567888888776 589999999999999999999987 99999999999999998888664
No 129
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.96 E-value=0.00012 Score=74.18 Aligned_cols=78 Identities=15% Similarity=0.227 Sum_probs=58.5
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
+++..+.+. +..+.++...++|+..++. ++.+...++|||+.|||.|.+|+.++...| +++|++|++++..
T Consensus 147 ~~~~~~~~~-~~~ii~t~i~~dGt~~G~d------~l~~~~~~~pviasGGv~~~~Dl~~l~~~g--~~gvivg~al~~g 217 (228)
T PRK04128 147 DAYEMLKNY-VNRFIYTSIERDGTLTGIE------EIERFWGDEEFIYAGGVSSAEDVKKLAEIG--FSGVIIGKALYEG 217 (228)
T ss_pred HHHHHHHHH-hCEEEEEeccchhcccCHH------HHHHhcCCCCEEEECCCCCHHHHHHHHHCC--CCEEEEEhhhhcC
Confidence 444555555 6778888888888777643 223333589999999999999999999876 9999999999876
Q ss_pred CchHHHH
Q psy9514 587 PWIFQEI 593 (611)
Q Consensus 587 P~lf~ei 593 (611)
=--..++
T Consensus 218 ~~~~~~~ 224 (228)
T PRK04128 218 RISLEEL 224 (228)
T ss_pred CcCHHHH
Confidence 4434443
No 130
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.96 E-value=0.00014 Score=81.70 Aligned_cols=139 Identities=15% Similarity=0.103 Sum_probs=87.0
Q ss_pred ccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCch
Q psy9514 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNN 454 (611)
Q Consensus 376 ~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~ 454 (611)
.+..++.+..+..++ .+|+|.|+|++++. +.....+.++.+++.. +.||.++ .-
T Consensus 236 vg~~~~~~~~~~~l~--~ag~d~i~id~a~G---------------~s~~~~~~i~~ik~~~~~~~v~aG----~V---- 290 (495)
T PTZ00314 236 ISTRPEDIERAAALI--EAGVDVLVVDSSQG---------------NSIYQIDMIKKLKSNYPHVDIIAG----NV---- 290 (495)
T ss_pred ECCCHHHHHHHHHHH--HCCCCEEEEecCCC---------------CchHHHHHHHHHHhhCCCceEEEC----Cc----
Confidence 334566655555544 36999999998653 1233467788888875 4566553 11
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
.+.+-++.+.++|+|+|.+.........| +...-.+.
T Consensus 291 ~t~~~a~~~~~aGad~I~vg~g~Gs~~~t-------------------------------------------~~~~~~g~ 327 (495)
T PTZ00314 291 VTADQAKNLIDAGADGLRIGMGSGSICIT-------------------------------------------QEVCAVGR 327 (495)
T ss_pred CCHHHHHHHHHcCCCEEEECCcCCccccc-------------------------------------------chhccCCC
Confidence 12355778889999999873222110100 00000122
Q ss_pred ccHHHHHHH---HhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKC---AQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~---~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+.+..+.++ ++. .++|||+.|||.++.|+.+++..| ||+||+|+.+..
T Consensus 328 p~~~ai~~~~~~~~~-~~v~vIadGGi~~~~di~kAla~G--A~~Vm~G~~~a~ 378 (495)
T PTZ00314 328 PQASAVYHVARYARE-RGVPCIADGGIKNSGDICKALALG--ADCVMLGSLLAG 378 (495)
T ss_pred ChHHHHHHHHHHHhh-cCCeEEecCCCCCHHHHHHHHHcC--CCEEEECchhcc
Confidence 233343333 333 379999999999999999999998 999999987544
No 131
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.95 E-value=8.3e-05 Score=80.16 Aligned_cols=237 Identities=18% Similarity=0.160 Sum_probs=113.1
Q ss_pred cCeeecCcEEeccCCCC--CCHHHHHHH---HHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhh
Q psy9514 253 KKIDWQGKLYLSPLTTV--GNLPFRRLC---KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYV 327 (611)
Q Consensus 253 ~~l~l~nrivlAPMt~~--gnlpfRrl~---~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~ 327 (611)
+.+.+.-+++.+.|.-. +.-.++.|+ ...|+-....|.-+..... .......+.|+..+ .+.
T Consensus 60 ~p~~l~~p~~is~MS~GaLS~~a~~Ala~ga~~~G~~~ntGEGg~~~~~~------------~~~~~~~I~Q~~sg-~fG 126 (368)
T PF01645_consen 60 KPLELSIPFMISAMSYGALSEEAKEALAKGANMAGTASNTGEGGELPEER------------KAAKDLRIKQIASG-RFG 126 (368)
T ss_dssp -HHHHHTTEEEEEB-CTTC-HHHHHHHHHHHHHCT-EEEETTT---GGGC------------SB-TTSSEEEE-TT--TT
T ss_pred ChhhheeeeecccCChhhcCHHHHHHHHHHHHHhCceEecCCCCCCHHHh------------cccCCceEEEcCCC-CCC
Confidence 45677889999999732 333444444 4567666666654433221 11122237887533 232
Q ss_pred HHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCc
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~ 407 (611)
+. .+.+. .++.|++-.|...... .+-++-+..........+.+ -.++++..-.|+
T Consensus 127 v~--~~~l~---~a~~iEIKigQGAKpG---------------~GG~Lp~~KV~~~ia~~R~~-----~~g~~~iSP~~h 181 (368)
T PF01645_consen 127 VR--PEYLK---QADMIEIKIGQGAKPG---------------EGGHLPGEKVTEEIARIRGV-----PPGVDLISPPPH 181 (368)
T ss_dssp ----HHHHC---C-SEEEEE---TTSTT---------------T--EE-GGG--HHHHHHHTS------TT--EE--SS-
T ss_pred CC--HHHhc---CCCeEEEEEecCcccc---------------CcceechhhchHHHHHHhCC-----CCCCccccCCCC
Confidence 22 12222 2466666544332220 12223333222222222211 223444433332
Q ss_pred cceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCc
Q psy9514 408 EFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQA 486 (611)
Q Consensus 408 ~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~a 486 (611)
.- ..+++-+.+.|..+++.. +.||.||+-.+. ..+ .++..+.++|+|.|+|.|.-.... -+
T Consensus 182 ~d----------i~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~--~~~---~~~~~~~~ag~D~ItIDG~~GGTG---Aa 243 (368)
T PF01645_consen 182 HD----------IYSIEDLAQLIEELRELNPGKPVGVKLVAGR--GVE---DIAAGAAKAGADFITIDGAEGGTG---AA 243 (368)
T ss_dssp TT-----------SSHHHHHHHHHHHHHH-TTSEEEEEEE-ST--THH---HHHHHHHHTT-SEEEEE-TT---S---SE
T ss_pred CC----------cCCHHHHHHHHHHHHhhCCCCcEEEEECCCC--cHH---HHHHhhhhccCCEEEEeCCCCCCC---CC
Confidence 21 356788999999999998 799999987652 212 233337899999999999754322 11
Q ss_pred ChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhh------CCCCcEEEecCCCC
Q psy9514 487 DWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL------CSPAPLYGNGDILS 560 (611)
Q Consensus 487 dw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~------~~~iPVIgnGgI~s 560 (611)
-|.. +. +.+.+....+.++.+. ...|.+|+.|++.|
T Consensus 244 p~~~---------------------~d-----------------~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t 285 (368)
T PF01645_consen 244 PLTS---------------------MD-----------------HVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRT 285 (368)
T ss_dssp ECCH---------------------HH-----------------HC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--S
T ss_pred chhH---------------------Hh-----------------hCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccC
Confidence 1110 00 2222222222222211 13589999999999
Q ss_pred HHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 561 YEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 561 ~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+.|+..++..| +|+|.|||++|.
T Consensus 286 ~~dv~kalaLG--AD~v~igt~~li 308 (368)
T PF01645_consen 286 GDDVAKALALG--ADAVYIGTAALI 308 (368)
T ss_dssp HHHHHHHHHCT---SEEE-SHHHHH
T ss_pred HHHHHHHHhcC--CCeeEecchhhh
Confidence 99999999998 999999999986
No 132
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.94 E-value=6.9e-05 Score=76.13 Aligned_cols=60 Identities=28% Similarity=0.382 Sum_probs=53.9
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
..++..++++++.. .+||+.+|||+|++++..++..| ||.|+||..++.+|+++.++.+.
T Consensus 62 ~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~G--a~~v~iGs~~~~~~~~~~~i~~~ 121 (241)
T PRK13585 62 RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLG--VDRVILGTAAVENPEIVRELSEE 121 (241)
T ss_pred cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcC--CCEEEEChHHhhChHHHHHHHHH
Confidence 34678888887764 89999999999999999999987 99999999999999999999776
No 133
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=97.91 E-value=6.2e-05 Score=81.06 Aligned_cols=256 Identities=14% Similarity=0.115 Sum_probs=137.2
Q ss_pred cccCeeecCcEEeccCCC------CCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCC
Q psy9514 251 EKKKIDWQGKLYLSPLTT------VGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNN 324 (611)
Q Consensus 251 ei~~l~l~nrivlAPMt~------~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~ 324 (611)
++-+.++.=++++||+.. .|.+..-+.|.+.|.-++.|-+.... +- + +... .+.++-.||.-.+
T Consensus 57 tllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~s-iE-----e---va~a-~~~~~wfQLY~~~ 126 (361)
T cd04736 57 SLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMS-IE-----D---VARQ-ADGDLWFQLYVVH 126 (361)
T ss_pred eECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCC-HH-----H---HHhh-cCCCeEEEEEecC
Confidence 344566677889999752 46678888899999999999877653 11 1 1111 1346788988765
Q ss_pred hhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc---ccceeeecccCchHHHHHHHHHHHHhcccceEEe
Q psy9514 325 PYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV 401 (611)
Q Consensus 325 p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~---~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IEL 401 (611)
........+..+. .++..+-+..-.|+.-.-....-..+... ....+.|... .|.-... .+. .+...+.
T Consensus 127 r~~~~~ll~RA~~-aG~~alvlTvD~pv~g~R~~d~r~~~~~p~~~~~~~~~~~~~-~p~w~~~---~~~--~~~~~~~- 198 (361)
T cd04736 127 RELAELLVKRALA-AGYTTLVLTTDVAVNGYRERDLRNGFAIPFRYTPRVLLDGIL-HPRWLLR---FLR--NGMPQLA- 198 (361)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEecCCCCCCCchhhhhcCCCCCcccchhhhhhhcc-Cchhhhh---hcc--ccccccc-
Confidence 3333333333333 34555555544454210000000000000 0000011100 1100000 000 0110000
Q ss_pred ccCCCccceecccccccc--ccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccc
Q psy9514 402 NLGCPIEFIYKQGSGSGL--LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479 (611)
Q Consensus 402 N~gCP~~~v~~~g~GsaL--l~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~ 479 (611)
|..-+.. ....+.+..+ .-++.+.-+.|+.+++.++.|+.+| |+ ...+-++.+.++|+|+|.|++.-.-
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~d~~~~w~~i~~ir~~~~~pviiK---gV-----~~~eda~~a~~~G~d~I~VSnhGGr 269 (361)
T cd04736 199 NFASDDA-IDVEVQAALMSRQMDASFNWQDLRWLRDLWPHKLLVK---GI-----VTAEDAKRCIELGADGVILSNHGGR 269 (361)
T ss_pred ccccccc-cchhhHHHHHHhccCCcCCHHHHHHHHHhCCCCEEEe---cC-----CCHHHHHHHHHCCcCEEEECCCCcC
Confidence 1000000 0000011111 1234455668899999999999999 22 1234577888999999988653321
Q ss_pred cccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCC
Q psy9514 480 QRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559 (611)
Q Consensus 480 qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~ 559 (611)
|- -..++..+.+.++++.. ++|||.-|||.
T Consensus 270 ql-------------------------------------------------d~~~~~~~~L~ei~~~~-~~~vi~dGGIr 299 (361)
T cd04736 270 QL-------------------------------------------------DDAIAPIEALAEIVAAT-YKPVLIDSGIR 299 (361)
T ss_pred CC-------------------------------------------------cCCccHHHHHHHHHHHh-CCeEEEeCCCC
Confidence 11 01223456677776654 69999999999
Q ss_pred CHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 560 SYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 560 s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+..|+.+++..| +|+|||||++|.
T Consensus 300 ~g~Dv~KALaLG--A~aV~iGr~~l~ 323 (361)
T cd04736 300 RGSDIVKALALG--ANAVLLGRATLY 323 (361)
T ss_pred CHHHHHHHHHcC--CCEEEECHHHHH
Confidence 999999999998 999999999884
No 134
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=97.90 E-value=0.00013 Score=81.59 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=82.4
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
.|+|.|=|..+|+ ++..+.++++.++... ++||++- . -.+.+-++.|.++|+++|-
T Consensus 236 aGVd~i~~D~a~g---------------~~~~~~~~i~~i~~~~~~~~vi~g----~----~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 236 AGVDVLVIDTAHG---------------HQVKMISAIKAVRALDLGVPIVAG----N----VVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred hCCCEEEEeCCCC---------------CcHHHHHHHHHHHHHCCCCeEEEe----c----cCCHHHHHHHHHhCCCEEE
Confidence 4888888876665 3466889999999875 6888872 1 1234567788899999999
Q ss_pred EEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcE
Q psy9514 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552 (611)
Q Consensus 473 vhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPV 552 (611)
|.++...-- |..+.|..+..+..+.++.... ++.. ++||
T Consensus 293 vg~g~Gs~~---------------------------------------ttr~~~~~g~~~~~a~~~~~~~-~~~~-~~~v 331 (475)
T TIGR01303 293 VGVGPGAMC---------------------------------------TTRMMTGVGRPQFSAVLECAAE-ARKL-GGHV 331 (475)
T ss_pred ECCcCCccc---------------------------------------cCccccCCCCchHHHHHHHHHH-HHHc-CCcE
Confidence 877643211 0001111111122223333222 2333 7999
Q ss_pred EEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 553 YGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 553 IgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
|+.|||.++.|+.+++..| +|+||+|+-+
T Consensus 332 iadGgi~~~~di~kala~G--A~~vm~g~~~ 360 (475)
T TIGR01303 332 WADGGVRHPRDVALALAAG--ASNVMVGSWF 360 (475)
T ss_pred EEeCCCCCHHHHHHHHHcC--CCEEeechhh
Confidence 9999999999999999998 9999999544
No 135
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=97.86 E-value=0.00035 Score=70.61 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=52.1
Q ss_pred hcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 514 ~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..|+ .+.+....++|.. ...+++.++++.+. .++|||+.|||.|++|+.++...| +|+|++|++++.
T Consensus 152 ~~g~-~ii~tdI~~dGt~-~G~d~eli~~i~~~-~~~pvia~GGi~s~ed~~~l~~~G--a~~vivgsal~~ 218 (221)
T TIGR00734 152 SFDY-GLIVLDIHSVGTM-KGPNLELLTKTLEL-SEHPVMLGGGISGVEDLELLKEMG--VSAVLVATAVHK 218 (221)
T ss_pred hcCC-EEEEEECCccccC-CCCCHHHHHHHHhh-CCCCEEEeCCCCCHHHHHHHHHCC--CCEEEEhHHhhC
Confidence 3444 3444455555543 44689999998876 589999999999999999988876 999999999875
No 136
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=97.81 E-value=0.0008 Score=67.14 Aligned_cols=192 Identities=16% Similarity=0.173 Sum_probs=104.2
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
+.+++...++..+.+.++.+. ..|++.|++-.. + +.+..+..+..+.++.++..+..++.|-+.+.
T Consensus 6 ~~~s~~~~~~~~~~~~~~~~~-~~G~~~i~l~~~--------d---~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~-- 71 (220)
T PRK05581 6 IAPSILSADFARLGEEVKAVE-AAGADWIHVDVM--------D---GHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVE-- 71 (220)
T ss_pred EEcchhcCCHHHHHHHHHHHH-HcCCCEEEEeCc--------c---CCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeC--
Confidence 556777778778888777775 458999998421 1 11111222345677777765544554443322
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---------hhhcchhhHhcCCceEE
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI---------IHNFMPKFRDWGASLIT 521 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~---------~~~~~~~l~~~G~~~it 521 (611)
...+.+..+.++|++.|+||+..... .......++..... ..+.+..+. .+++++.
T Consensus 72 ----d~~~~i~~~~~~g~d~v~vh~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~-~~~d~i~ 136 (220)
T PRK05581 72 ----NPDRYVPDFAKAGADIITFHVEASEH----------IHRLLQLIKSAGIKAGLVLNPATPLEPLEDVL-DLLDLVL 136 (220)
T ss_pred ----CHHHHHHHHHHcCCCEEEEeeccchh----------HHHHHHHHHHcCCEEEEEECCCCCHHHHHHHH-hhCCEEE
Confidence 22345566679999999999975221 11111112111111 111122221 2466664
Q ss_pred ecccc--ccccccCCccHHHHHHHHhhCC----CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 522 LHGRT--REQRYTKQADWDYIEKCAQLCS----PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 522 ihgrt--r~g~~~~~a~~~~i~~~~k~~~----~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.... ..+........+.+.++.+... +.+|..-|||+. +++.++++.| +|+|.+|++++..|+....++
T Consensus 137 ~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~-~nv~~l~~~G--aD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 137 LMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA-DNIKECAEAG--ADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred EEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCH-HHHHHHHHcC--CCEEEEChhhhCCCCHHHHHH
Confidence 43321 1111111112233343332211 133556799976 8999999887 999999999998888654443
No 137
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.81 E-value=0.00013 Score=74.13 Aligned_cols=57 Identities=14% Similarity=0.304 Sum_probs=51.7
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++.++++++. ..+||+..|||+|.+|+.+++..| +|.|.||+.++ ||.+++++.+
T Consensus 60 ~n~~~i~~i~~~-~~~pv~~gGGIrs~edv~~l~~~G--~~~vivGtaa~-~~~~l~~~~~ 116 (228)
T PRK04128 60 KNLDVVKNIIRE-TGLKVQVGGGLRTYESIKDAYEIG--VENVIIGTKAF-DLEFLEKVTS 116 (228)
T ss_pred chHHHHHHHHhh-CCCCEEEcCCCCCHHHHHHHHHCC--CCEEEECchhc-CHHHHHHHHH
Confidence 577888888776 589999999999999999999987 99999999999 9999999865
No 138
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=97.80 E-value=8.9e-06 Score=83.34 Aligned_cols=60 Identities=33% Similarity=0.730 Sum_probs=49.5
Q ss_pred ccCCcccccCCCCCCCCC---CCCCCCc---CChhHHhhcC--CCCCCCCCcceeccccCCCCCccccCcc
Q psy9514 74 DCYCPFLKDSTLEQTCKY---GEKCKFV---HDKNVFMKSK--PEDISEQCYVFLQHGYCPMGIACRFGSS 136 (611)
Q Consensus 74 ~~lC~~~~~~~~~~~C~~---g~~C~f~---Hd~~~yl~~k--~~d~~~~C~~~~~~G~C~~G~~Crf~~~ 136 (611)
..||.+|... +.|+| |++|+|+ |.+.+.-..| ..--+..|-.|+..||||||.+|.|..+
T Consensus 230 ~~lc~~ft~k---g~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hg 297 (351)
T COG5063 230 PELCESFTRK---GTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHG 297 (351)
T ss_pred HHHhhccCcC---CCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccC
Confidence 4899999876 68999 9999999 9988754422 3333789999999999999999999953
No 139
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=97.79 E-value=0.00011 Score=79.77 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=71.4
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhh
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~ 507 (611)
+-|+.+++.++.||.||=-+ ..+-++.+.++|+++|.|++.-.-|.
T Consensus 235 ~di~~lr~~~~~pvivKgV~--------s~~dA~~a~~~Gvd~I~Vs~hGGr~~-------------------------- 280 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKGIL--------DPEDARDAVRFGADGIVVSNHGGRQL-------------------------- 280 (381)
T ss_pred HHHHHHHHhCCCCEEEEecC--------CHHHHHHHHhCCCCEEEECCCCCCCC--------------------------
Confidence 44788888899999999332 23557788899999999876321111
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-...+....+.++++.. .++|||+.|||.+..|+.++|..| +|+|||||.+|.
T Consensus 281 -----------------------d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLG--A~~V~iGr~~l~ 334 (381)
T PRK11197 281 -----------------------DGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALG--ADTVLLGRAFVY 334 (381)
T ss_pred -----------------------CCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcC--cCceeEhHHHHH
Confidence 00112234444444433 369999999999999999999998 999999999875
No 140
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.78 E-value=0.00017 Score=81.20 Aligned_cols=124 Identities=13% Similarity=0.092 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-----chhhhhcchhhHhcCCceEEec--cc--
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-----NNIIHNFMPKFRDWGASLITLH--GR-- 525 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-----~~~~~~~~~~l~~~G~~~itih--gr-- 525 (611)
...+-++.|.++|+|+|.|....... ..-|+.|..+....+.. +-.+.+.+..+.++|++.|.+. ..
T Consensus 248 ~~~~r~~~l~~ag~d~i~iD~~~g~~----~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~ 323 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVLDSSQGDS----IYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSI 323 (505)
T ss_pred cHHHHHHHHHHcCCCEEEEeCCCCCc----HHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCcc
Confidence 45677889999999999997643211 22478888888765522 2334455677889999999652 22
Q ss_pred --cccc---cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 526 --TREQ---RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 526 --tr~g---~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
|+.. .+.....+..+.++++. .++|||+-|||.++.|+.++|..| ||+||||..+..
T Consensus 324 ~~t~~~~~~g~~~~~~i~~~~~~~~~-~~vpVIadGGI~~~~di~kAla~G--A~~V~vGs~~~~ 385 (505)
T PLN02274 324 CTTQEVCAVGRGQATAVYKVASIAAQ-HGVPVIADGGISNSGHIVKALTLG--ASTVMMGSFLAG 385 (505)
T ss_pred ccCccccccCCCcccHHHHHHHHHHh-cCCeEEEeCCCCCHHHHHHHHHcC--CCEEEEchhhcc
Confidence 2221 11122355567777665 479999999999999999999998 999999976554
No 141
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.77 E-value=0.00044 Score=69.84 Aligned_cols=121 Identities=13% Similarity=0.085 Sum_probs=79.6
Q ss_pred cccceEEe--ccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC-CchHHHHHHHHHHHcCCCE
Q psy9514 394 MVVDFVDV--NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK-DNNIIHNFMPKFRDWGASL 470 (611)
Q Consensus 394 ~g~D~IEL--N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~-~~~~a~~la~~l~~aGvd~ 470 (611)
.|.+.||+ |.+.+ ...+.+.+.+-++++++.+ .|+.+|+=+-... +.+...++++.+.++|+|+
T Consensus 86 ~GA~EiD~Vin~~~~------------~~g~~~~v~~ei~~v~~~~-~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadf 152 (221)
T PRK00507 86 NGADEIDMVINIGAL------------KSGDWDAVEADIRAVVEAA-GGAVLKVIIETCLLTDEEKVKACEIAKEAGADF 152 (221)
T ss_pred cCCceEeeeccHHHh------------cCCCHHHHHHHHHHHHHhc-CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCE
Confidence 38888885 55444 3345677777778887765 3667776432211 2345678888899999998
Q ss_pred EEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CC
Q psy9514 471 ITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SP 549 (611)
Q Consensus 471 ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~ 549 (611)
|..+-+.. .+.+..+.++.+.+.. ..
T Consensus 153 IKTsTG~~-----------------------------------------------------~~gat~~~v~~m~~~~~~~ 179 (221)
T PRK00507 153 VKTSTGFS-----------------------------------------------------TGGATVEDVKLMRETVGPR 179 (221)
T ss_pred EEcCCCCC-----------------------------------------------------CCCCCHHHHHHHHHHhCCC
Confidence 76543321 1223334444333333 36
Q ss_pred CcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 550 APLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 550 iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
++|.++|||.|++++.++++.| ++-+-...|
T Consensus 180 ~~IKasGGIrt~~~a~~~i~aG--A~riGtS~~ 210 (221)
T PRK00507 180 VGVKASGGIRTLEDALAMIEAG--ATRLGTSAG 210 (221)
T ss_pred ceEEeeCCcCCHHHHHHHHHcC--cceEccCcH
Confidence 9999999999999999999998 777665544
No 142
>KOG2335|consensus
Probab=97.75 E-value=3.8e-05 Score=81.27 Aligned_cols=110 Identities=19% Similarity=0.267 Sum_probs=74.4
Q ss_pred hcCCCEEEEEEcc----ccCCchHHHHHHHHHHH-cCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcch
Q psy9514 436 VSSLPITVKTRTG----IHKDNNIIHNFMPKFRD-WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMP 510 (611)
Q Consensus 436 ~~~~PvtVKiR~g----~~~~~~~a~~la~~l~~-aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~ 510 (611)
++|+|-.+-.|-| ..++.+...+++.++.. .++. |++.-|... +.+++.++++
T Consensus 105 NcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~p-Vs~KIRI~~---------------------d~~kTvd~ak 162 (358)
T KOG2335|consen 105 NCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVP-VSVKIRIFV---------------------DLEKTVDYAK 162 (358)
T ss_pred cCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCC-eEEEEEecC---------------------cHHHHHHHHH
Confidence 4577855554543 23455667788888764 4554 899999854 3466778899
Q ss_pred hhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 511 ~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
.+.++|++++|+||||++ ..+. .. +.-+|+.+..+.++- .|..+|+=|-+.-+.=.
T Consensus 163 ~~e~aG~~~ltVHGRtr~--~kg~--------------~~------~pad~~~i~~v~~~~--~~ipviaNGnI~~~~d~ 218 (358)
T KOG2335|consen 163 MLEDAGVSLLTVHGRTRE--QKGL--------------KT------GPADWEAIKAVRENV--PDIPVIANGNILSLEDV 218 (358)
T ss_pred HHHhCCCcEEEEecccHH--hcCC--------------CC------CCcCHHHHHHHHHhC--cCCcEEeeCCcCcHHHH
Confidence 999999999999999986 2221 12 234788888888775 45777777766544333
Q ss_pred H
Q psy9514 591 Q 591 (611)
Q Consensus 591 ~ 591 (611)
.
T Consensus 219 ~ 219 (358)
T KOG2335|consen 219 E 219 (358)
T ss_pred H
Confidence 3
No 143
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=97.73 E-value=0.00062 Score=73.18 Aligned_cols=143 Identities=8% Similarity=0.050 Sum_probs=100.5
Q ss_pred ccceeeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEE
Q psy9514 368 ANLFGVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445 (611)
Q Consensus 368 ~~~~ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKi 445 (611)
..+....+... +++.+.+.++.+. ..||++|.|++|+... +.+++++..++|+++++.++..+.+.+
T Consensus 126 ~v~~~~~~~~~~~~~~~~~~~a~~~~-~~Gf~~~Kik~g~~~~----------~~~~~~~d~~~v~~ir~~~g~~~~l~v 194 (357)
T cd03316 126 RVRVYASGGGYDDSPEELAEEAKRAV-AEGFTAVKLKVGGPDS----------GGEDLREDLARVRAVREAVGPDVDLMV 194 (357)
T ss_pred ceeeEEecCCCCCCHHHHHHHHHHHH-HcCCCEEEEcCCCCCc----------chHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 34555555444 5888888888775 4699999999886511 117889999999999999865444443
Q ss_pred EccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 446 RTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 446 R~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
.....-+.+++.++++.|++.++.+|. |.
T Consensus 195 DaN~~~~~~~a~~~~~~l~~~~i~~iE-------qP-------------------------------------------- 223 (357)
T cd03316 195 DANGRWDLAEAIRLARALEEYDLFWFE-------EP-------------------------------------------- 223 (357)
T ss_pred ECCCCCCHHHHHHHHHHhCccCCCeEc-------CC--------------------------------------------
Confidence 332222457788999999888776643 11
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
....+++.++.+.+. .++||++.+.+++++++.++++.+ .+|.|.+-
T Consensus 224 ------~~~~~~~~~~~l~~~-~~ipi~~dE~~~~~~~~~~~i~~~-~~d~v~~k 270 (357)
T cd03316 224 ------VPPDDLEGLARLRQA-TSVPIAAGENLYTRWEFRDLLEAG-AVDIIQPD 270 (357)
T ss_pred ------CCccCHHHHHHHHHh-CCCCEEeccccccHHHHHHHHHhC-CCCEEecC
Confidence 112245556665554 589999999999999999999987 79998763
No 144
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=97.71 E-value=0.00062 Score=77.14 Aligned_cols=152 Identities=14% Similarity=0.143 Sum_probs=105.1
Q ss_pred HHHHHHHHHhhcCCCEEEEEEccccCC----chHHHHHHHHHHHcCCCEEEEEccc---cccc--cccCcChhHHHHHhh
Q psy9514 426 LQSVITCMNEVSSLPITVKTRTGIHKD----NNIIHNFMPKFRDWGASLITLHGRT---REQR--YTKQADWDYIEKCAQ 496 (611)
Q Consensus 426 l~eIv~av~~~~~~PvtVKiR~g~~~~----~~~a~~la~~l~~aGvd~ItvhgR~---r~qr--~~~~adw~~i~~~~~ 496 (611)
..++|+.+.+.+.+||+|-=-+-..++ .-.+++-++++..+|++-|.|---. .++. .+++-+.+.|.++++
T Consensus 302 ~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~ 381 (538)
T PLN02617 302 MLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISR 381 (538)
T ss_pred HHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHH
Confidence 467888888888899998622211111 1235677888889999988774311 0000 012234444555444
Q ss_pred hcccC--------------------------------------------------chhhhhcchhhHhcCCceEEecccc
Q psy9514 497 LCSRD--------------------------------------------------NNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 497 ~~~~~--------------------------------------------------~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
...+. .....+++..+.+.|+..|.++...
T Consensus 382 ~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id 461 (538)
T PLN02617 382 VYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCID 461 (538)
T ss_pred HcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecc
Confidence 43221 1123456788899999999999999
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
++|...+ .|.+.++.+.+. +++|||++||+.+++|+.+++..+ ++|+++.|
T Consensus 462 ~DGt~~G-~d~~l~~~v~~~-~~ipviasGG~g~~~d~~~~~~~~-~~~a~~aa 512 (538)
T PLN02617 462 CDGQGKG-FDIELVKLVSDA-VTIPVIASSGAGTPEHFSDVFSKT-NASAALAA 512 (538)
T ss_pred ccccccC-cCHHHHHHHHhh-CCCCEEEECCCCCHHHHHHHHhcC-CccEEEEE
Confidence 9997544 688888887665 699999999999999999999876 79999988
No 145
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=97.71 E-value=0.00063 Score=67.50 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhc-----ccCchhhhhcch--hhHhcCCceEEeccccccc
Q psy9514 457 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-----SRDNNIIHNFMP--KFRDWGASLITLHGRTREQ 529 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~-----~~~~~~~~~~~~--~l~~~G~~~itihgrtr~g 529 (611)
.++.+.+...|++.|++|+.... +++..+.... +........... .....+++++.+...++..
T Consensus 63 ~~i~~ia~~~~~d~Vqlhg~e~~---------~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~ 133 (203)
T cd00405 63 EEILEIAEELGLDVVQLHGDESP---------EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGG 133 (203)
T ss_pred HHHHHHHHhcCCCEEEECCCCCH---------HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCC
Confidence 35566677889999999986411 2233333221 111111111111 1223588999887666542
Q ss_pred --cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 530 --RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 530 --~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
......+|+.++++. ..+||++.||| |++.+.+++..+ ++++|.|.+|+...|-
T Consensus 134 ~Gg~g~~~~~~~l~~~~---~~~PvilaGGI-~~~Nv~~~i~~~-~~~gvdv~S~ie~~pg 189 (203)
T cd00405 134 GGGTGKTFDWSLLRGLA---SRKPVILAGGL-TPDNVAEAIRLV-RPYGVDVSSGVETSPG 189 (203)
T ss_pred CCCCcceEChHHhhccc---cCCCEEEECCC-ChHHHHHHHHhc-CCCEEEcCCcccCCCC
Confidence 233456899888764 47899999999 899999999987 7999999999888764
No 146
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.0023 Score=63.86 Aligned_cols=183 Identities=18% Similarity=0.147 Sum_probs=119.7
Q ss_pred eeecccC--chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEcc
Q psy9514 372 GVQLCGN--NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTG 448 (611)
Q Consensus 372 ivQi~g~--~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g 448 (611)
.+|++=. +.+.+...++.+.+ ..|.||+ |-| |..+.. .+.|+.|++.. +.+|.+-+.+-
T Consensus 5 ~LQvALD~~~l~~Ai~~a~~v~~--~~diiEv--GTp------------Lik~eG--~~aV~~lr~~~pd~~IvAD~Kt~ 66 (217)
T COG0269 5 LLQVALDLLDLEEAIEIAEEVAD--YVDIIEV--GTP------------LIKAEG--MRAVRALRELFPDKIIVADLKTA 66 (217)
T ss_pred ceEeeecccCHHHHHHHHHHhhh--cceEEEe--CcH------------HHHHhh--HHHHHHHHHHCCCCeEEeeeeec
Confidence 3455544 55677777777653 3777775 344 222222 36778888876 46666665542
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCCc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGAS 518 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~~ 518 (611)
+...-.++.+.++|+|++||.|-. +-..|..|....++++.. ...-...+.+.|++
T Consensus 67 -----D~G~~e~~ma~~aGAd~~tV~g~A---------~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd 132 (217)
T COG0269 67 -----DAGAIEARMAFEAGADWVTVLGAA---------DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVD 132 (217)
T ss_pred -----chhHHHHHHHHHcCCCEEEEEecC---------CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCC
Confidence 234456888899999999999865 345566666555554332 22334467779999
Q ss_pred eEEeccccccccccCCcc-HHHHHHHHhhCCC-CcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 519 LITLHGRTREQRYTKQAD-WDYIEKCAQLCSP-APLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~-~~~i~~~~k~~~~-iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
.+.+|-..-.+. .+... |+.+..+.+.... ..|-..||| +++++..++..+ +|.|.+||++-.-.+.-
T Consensus 133 ~~~~H~g~D~q~-~G~~~~~~~l~~ik~~~~~g~~vAVaGGI-~~~~i~~~~~~~--~~ivIvGraIt~a~dp~ 202 (217)
T COG0269 133 QVILHRGRDAQA-AGKSWGEDDLEKIKKLSDLGAKVAVAGGI-TPEDIPLFKGIG--ADIVIVGRAITGAKDPA 202 (217)
T ss_pred EEEEEecccHhh-cCCCccHHHHHHHHHhhccCceEEEecCC-CHHHHHHHhcCC--CCEEEECchhcCCCCHH
Confidence 999985444343 23222 5666665554322 688889999 799999999987 99999999988766543
No 147
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.69 E-value=0.00044 Score=77.88 Aligned_cols=126 Identities=15% Similarity=0.099 Sum_probs=79.4
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
+|+|.|+|..++- ....+.+.|+.++...+.++.|+- |.- .+.+-++.|.++|+|+|.|
T Consensus 253 aGvd~i~vd~a~g---------------~~~~~~~~i~~ir~~~~~~~~V~a--GnV----~t~e~a~~li~aGAd~I~v 311 (502)
T PRK07107 253 AGADVLCIDSSEG---------------YSEWQKRTLDWIREKYGDSVKVGA--GNV----VDREGFRYLAEAGADFVKV 311 (502)
T ss_pred hCCCeEeecCccc---------------ccHHHHHHHHHHHHhCCCCceEEe--ccc----cCHHHHHHHHHcCCCEEEE
Confidence 5999999973332 123346888888887765555542 211 2235567788999999988
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC------
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC------ 547 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~------ 547 (611)
.......-. ||...-.+.+-+..+.++++..
T Consensus 312 g~g~Gs~c~-------------------------------------------tr~~~~~g~~~~~ai~~~~~a~~~~~~~ 348 (502)
T PRK07107 312 GIGGGSICI-------------------------------------------TREQKGIGRGQATALIEVAKARDEYFEE 348 (502)
T ss_pred CCCCCcCcc-------------------------------------------cccccCCCccHHHHHHHHHHHHHHHHhh
Confidence 433211100 0100012223344444444322
Q ss_pred -C-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 548 -S-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 548 -~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
. .+|||+-|||.+.-|+.++|..| +|+|||||.+-.
T Consensus 349 ~g~~~~viadgGir~~gdi~KAla~G--A~~vm~G~~~ag 386 (502)
T PRK07107 349 TGVYIPICSDGGIVYDYHMTLALAMG--ADFIMLGRYFAR 386 (502)
T ss_pred cCCcceEEEcCCCCchhHHHHHHHcC--CCeeeeChhhhc
Confidence 1 38999999999999999999998 999999987644
No 148
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=97.69 E-value=0.00068 Score=71.46 Aligned_cols=177 Identities=18% Similarity=0.144 Sum_probs=102.8
Q ss_pred CEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCC-ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCc
Q psy9514 284 DITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN-NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362 (611)
Q Consensus 284 ~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~-~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~ 362 (611)
++-.+||+.+..+.........+.+.++ +.++++|++|. +++.+.++++.+.+ .++++|++|++||... ...+.+.
T Consensus 71 g~~n~e~~s~~~~~~~~~~~~~~~~~~~-~~p~i~si~G~~~~~~~~~~a~~~~~-~gad~ielN~sCP~~~-~~~~~G~ 147 (299)
T cd02940 71 GFNNIELISEKPLEYWLKEIRELKKDFP-DKILIASIMCEYNKEDWTELAKLVEE-AGADALELNFSCPHGM-PERGMGA 147 (299)
T ss_pred cccCCccccccCHHHHHHHHHHHHhhCC-CCeEEEEecCCCCHHHHHHHHHHHHh-cCCCEEEEECCCCCCC-CCCCCch
Confidence 4557788776544322121112222222 67899999998 99999999988865 3589999999999863 1122222
Q ss_pred cccc---------------cccceeeecccCchHHHHHHHHHHHHhcccceEEe-c-----------cCCCcc----cee
Q psy9514 363 GLLQ---------------RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV-N-----------LGCPIE----FIY 411 (611)
Q Consensus 363 ~l~~---------------~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IEL-N-----------~gCP~~----~v~ 411 (611)
.+.. ...|+.+-+.-+. ..+.+.++.+. ..|+|+|=+ | -.-|.. ...
T Consensus 148 ~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~-~~~~~~a~~~~-~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~ 225 (299)
T cd02940 148 AVGQDPELVEEICRWVREAVKIPVIAKLTPNI-TDIREIARAAK-EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTT 225 (299)
T ss_pred hhccCHHHHHHHHHHHHHhcCCCeEEECCCCc-hhHHHHHHHHH-HcCCCEEEEecccccccccccccCCccccccCCCC
Confidence 2111 1467888876543 35566666654 458888753 2 111211 011
Q ss_pred ccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 412 KQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 412 ~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
..|+.+. -......++|..+++.+ ++||+.- | +........+.+. +|+++|.|-
T Consensus 226 ~gg~sG~--a~~p~~l~~v~~~~~~~~~~ipIig~---G---GI~~~~da~~~l~-aGA~~V~i~ 281 (299)
T cd02940 226 YGGYSGP--AVKPIALRAVSQIARAPEPGLPISGI---G---GIESWEDAAEFLL-LGASVVQVC 281 (299)
T ss_pred cCcccCC--CcchHHHHHHHHHHHhcCCCCcEEEE---C---CCCCHHHHHHHHH-cCCChheEc
Confidence 2222221 12234567788888888 6777652 2 2233445566664 999998763
No 149
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=97.69 E-value=0.00071 Score=68.66 Aligned_cols=186 Identities=12% Similarity=0.073 Sum_probs=110.6
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRT 447 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~ 447 (611)
+..++...++..+.+-.+.++. .|+|.| |+-=|+= +-+-.+| .++++++++.. ++|+-+++-+
T Consensus 9 i~pSi~~~d~~~l~~~~~~l~~-~~~~~~H~DimDg~f---vpn~~~G----------~~~v~~lr~~~~~~~lDvHLm~ 74 (228)
T PTZ00170 9 IAPSILAADFSKLADEAQDVLS-GGADWLHVDVMDGHF---VPNLSFG----------PPVVKSLRKHLPNTFLDCHLMV 74 (228)
T ss_pred EehhHhhcCHHHHHHHHHHHHH-cCCCEEEEecccCcc---CCCcCcC----------HHHHHHHHhcCCCCCEEEEECC
Confidence 4567788888888888888753 355553 3322331 1111233 56788888877 7899898662
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCC
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGA 517 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~ 517 (611)
.+....++.+.++|++.||+|.-..... +..+.+.+++.... ...+.+.++...+
T Consensus 75 ------~~p~~~i~~~~~~Gad~itvH~ea~~~~---------~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~v 139 (228)
T PTZ00170 75 ------SNPEKWVDDFAKAGASQFTFHIEATEDD---------PKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLV 139 (228)
T ss_pred ------CCHHHHHHHHHHcCCCEEEEeccCCchH---------HHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchh
Confidence 2345677899999999999998753211 22333333322211 1111111111234
Q ss_pred ceE---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCch
Q psy9514 518 SLI---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 518 ~~i---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
+.| +++.....+. ..+..++.++++.+....+.|..-||| +++.+.++.+.| +|.+++||++...++.
T Consensus 140 D~Vl~m~v~pG~~gq~-~~~~~~~ki~~~~~~~~~~~I~VdGGI-~~~ti~~~~~aG--ad~iVvGsaI~~a~d~ 210 (228)
T PTZ00170 140 DMVLVMTVEPGFGGQS-FMHDMMPKVRELRKRYPHLNIQVDGGI-NLETIDIAADAG--ANVIVAGSSIFKAKDR 210 (228)
T ss_pred hhHHhhhcccCCCCcE-ecHHHHHHHHHHHHhcccCeEEECCCC-CHHHHHHHHHcC--CCEEEEchHHhCCCCH
Confidence 554 3332222121 112234556666554445678889999 588999999987 9999999998877764
No 150
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.66 E-value=0.00075 Score=75.92 Aligned_cols=109 Identities=16% Similarity=0.110 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch
Q psy9514 425 ILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN 503 (611)
Q Consensus 425 ~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~ 503 (611)
.+.+.++.+++.. +.||.++-- .+.+-++.|.++|+++|.+-.+...-.
T Consensus 255 ~vl~~i~~i~~~~p~~~vi~g~v--------~t~e~a~~l~~aGad~i~vg~g~gs~~---------------------- 304 (486)
T PRK05567 255 GVLDRVREIKAKYPDVQIIAGNV--------ATAEAARALIEAGADAVKVGIGPGSIC---------------------- 304 (486)
T ss_pred hHHHHHHHHHhhCCCCCEEEecc--------CCHHHHHHHHHcCCCEEEECCCCCccc----------------------
Confidence 3567788888877 788888421 123557778899999998743321000
Q ss_pred hhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC--CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 504 ~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~--~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.|+.-.-.+.+.+..+.++++.. .++|||+.|||.++.|+.+++..| ||+||||
T Consensus 305 ---------------------~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~G--A~~v~~G- 360 (486)
T PRK05567 305 ---------------------TTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAG--ASAVMLG- 360 (486)
T ss_pred ---------------------cceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhC--CCEEEEC-
Confidence 00000012345666776665532 369999999999999999999998 9999999
Q ss_pred HhhhCC
Q psy9514 582 GALIKP 587 (611)
Q Consensus 582 gaL~dP 587 (611)
++|+.|
T Consensus 361 ~~~a~~ 366 (486)
T PRK05567 361 SMLAGT 366 (486)
T ss_pred cccccc
Confidence 455555
No 151
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=97.65 E-value=0.0048 Score=61.74 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=110.5
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.+++.=+.+.+++.+...++.+. ..|+..||+=+--| ...+.++.+++..+.++.|. .|
T Consensus 10 ~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~------------------~~~~~i~~l~~~~~~~~~iG--aG 68 (206)
T PRK09140 10 LPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSP------------------DPFDSIAALVKALGDRALIG--AG 68 (206)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCc------------------cHHHHHHHHHHHcCCCcEEe--EE
Confidence 34555577789999999999886 35899999854333 12346666666555454443 33
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-ch--hhhhcchhhHhcCCceEEeccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-NN--IIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-~~--~~~~~~~~l~~~G~~~itihgr 525 (611)
.--+ .+-++...++|+++++.-+.... .+..+.. .... -. .+.+.+....+.|++.+.+..
T Consensus 69 TV~~----~~~~~~a~~aGA~fivsp~~~~~----------v~~~~~~-~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fp- 132 (206)
T PRK09140 69 TVLS----PEQVDRLADAGGRLIVTPNTDPE----------VIRRAVA-LGMVVMPGVATPTEAFAALRAGAQALKLFP- 132 (206)
T ss_pred ecCC----HHHHHHHHHcCCCEEECCCCCHH----------HHHHHHH-CCCcEEcccCCHHHHHHHHHcCCCEEEECC-
Confidence 2222 23466778999999876433211 1111110 0000 00 011223445668999998743
Q ss_pred cccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
.....+++++.+..... .+||++.||| +++.+.++++.| +|+|.++++++...+
T Consensus 133 ------a~~~G~~~l~~l~~~~~~~ipvvaiGGI-~~~n~~~~~~aG--a~~vav~s~l~~~~~ 187 (206)
T PRK09140 133 ------ASQLGPAGIKALRAVLPPDVPVFAVGGV-TPENLAPYLAAG--AAGFGLGSALYRPGQ 187 (206)
T ss_pred ------CCCCCHHHHHHHHhhcCCCCeEEEECCC-CHHHHHHHHHCC--CeEEEEehHhccccc
Confidence 12234788888877664 6999999999 899999999998 999999999886533
No 152
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.64 E-value=0.0062 Score=61.47 Aligned_cols=138 Identities=9% Similarity=0.079 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++++...|+.+.+..+-+.|-|- +..+. -.|+-|+- +.+++.+..+..-|.|--=+. + -.-
T Consensus 74 tA~EAv~~A~laRe~~~t~wIKLE-------Vi~D~--~~L~PD~~---etl~Aae~Lv~eGF~VlPY~~--~----D~v 135 (247)
T PF05690_consen 74 TAEEAVRTARLAREAFGTNWIKLE-------VIGDD--KTLLPDPI---ETLKAAEILVKEGFVVLPYCT--D----DPV 135 (247)
T ss_dssp SHHHHHHHHHHHHHTTS-SEEEE---------BS-T--TT--B-HH---HHHHHHHHHHHTT-EEEEEE---S-----HH
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEE-------EeCCC--CCcCCChh---HHHHHHHHHHHCCCEEeecCC--C----CHH
Confidence 677888888888777788887664 21111 12334443 333444333333333332211 2 136
Q ss_pred HHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHH
Q psy9514 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538 (611)
Q Consensus 459 la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~ 538 (611)
++++|++.|+.+|.--|-.-. .-.+..+..
T Consensus 136 ~akrL~d~GcaavMPlgsPIG--------------------------------------------------Sg~Gi~n~~ 165 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMPLGSPIG--------------------------------------------------SGRGIQNPY 165 (247)
T ss_dssp HHHHHHHTT-SEBEEBSSSTT--------------------------------------------------T---SSTHH
T ss_pred HHHHHHHCCCCEEEecccccc--------------------------------------------------cCcCCCCHH
Confidence 789999999998876553211 123344556
Q ss_pred HHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 539 ~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.++.++... ++|||.-+||-++.|+.++++.| +|+|++..+.-.-.
T Consensus 166 ~l~~i~~~~-~vPvIvDAGiG~pSdaa~AMElG--~daVLvNTAiA~A~ 211 (247)
T PF05690_consen 166 NLRIIIERA-DVPVIVDAGIGTPSDAAQAMELG--ADAVLVNTAIAKAK 211 (247)
T ss_dssp HHHHHHHHG-SSSBEEES---SHHHHHHHHHTT---SEEEESHHHHTSS
T ss_pred HHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHcC--CceeehhhHHhccC
Confidence 677777665 99999999999999999999998 99999998876533
No 153
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.63 E-value=0.0004 Score=70.99 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=53.6
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
..+.+.|.++++.. .+||...|||.|.||+++++..| ||-|.+|.+++.||.++.++.+.
T Consensus 61 ~~n~~~i~~i~~~~-~~pv~vgGGirs~edv~~~l~~G--a~kvviGs~~l~~p~l~~~i~~~ 120 (241)
T PRK14024 61 GSNRELLAEVVGKL-DVKVELSGGIRDDESLEAALATG--CARVNIGTAALENPEWCARVIAE 120 (241)
T ss_pred CccHHHHHHHHHHc-CCCEEEcCCCCCHHHHHHHHHCC--CCEEEECchHhCCHHHHHHHHHH
Confidence 34678888888765 89999999999999999999998 99999999999999999998653
No 154
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.62 E-value=0.00044 Score=71.40 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=53.1
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
..+.+.++++++. ..+||+..|||.|.+|+.+++..| ++.|.||++++.+|.++.++.+
T Consensus 60 ~~n~~~i~~i~~~-~~~pv~~gGGi~s~~d~~~l~~~G--~~~vvigs~~~~~~~~~~~~~~ 118 (258)
T PRK01033 60 EPNYELIENLASE-CFMPLCYGGGIKTLEQAKKIFSLG--VEKVSINTAALEDPDLITEAAE 118 (258)
T ss_pred cccHHHHHHHHHh-CCCCEEECCCCCCHHHHHHHHHCC--CCEEEEChHHhcCHHHHHHHHH
Confidence 4578888988876 489999999999999999999887 9999999999999999999865
No 155
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=97.61 E-value=0.0018 Score=66.73 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=101.1
Q ss_pred hcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 393 ~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
..|+++|=+. .-..-+||++ +-++.+++.+++|+..| |-.-+- .-+.....+|+|+|-
T Consensus 79 ~~GA~aiSVl-------Te~~~F~Gs~--------~dL~~v~~~~~~PvL~K------DFIid~-~QI~eA~~~GADaVL 136 (254)
T PF00218_consen 79 EAGAAAISVL-------TEPKFFGGSL--------EDLRAVRKAVDLPVLRK------DFIIDP-YQIYEARAAGADAVL 136 (254)
T ss_dssp HTT-SEEEEE---------SCCCHHHH--------HHHHHHHHHSSS-EEEE------S---SH-HHHHHHHHTT-SEEE
T ss_pred hcCCCEEEEE-------CCCCCCCCCH--------HHHHHHHHHhCCCcccc------cCCCCH-HHHHHHHHcCCCEee
Confidence 3488888875 2233456653 56678888888998876 211111 112344578999999
Q ss_pred EEccccccccccCcChhHHHHHhhhcccCchh----hh--hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhh
Q psy9514 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----IH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546 (611)
Q Consensus 473 vhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----~~--~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~ 546 (611)
+..+.-... .+.++..+....... ++ .-+....+.|++.|-+.-|.-. +-..+.+...+++..
T Consensus 137 LI~~~L~~~--------~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~---tf~vd~~~~~~l~~~ 205 (254)
T PF00218_consen 137 LIAAILSDD--------QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLK---TFEVDLNRTEELAPL 205 (254)
T ss_dssp EEGGGSGHH--------HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTT---TCCBHTHHHHHHHCH
T ss_pred hhHHhCCHH--------HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcccc---CcccChHHHHHHHhh
Confidence 988764332 223333333322221 11 1233445778888777655442 333455555555544
Q ss_pred CC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 547 CS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 547 ~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+ ++.+|+.+||.|++|+..+...| +|+|.||.+++..|+.-+.+++
T Consensus 206 ip~~~~~iseSGI~~~~d~~~l~~~G--~davLVGe~lm~~~d~~~~~~~ 253 (254)
T PF00218_consen 206 IPKDVIVISESGIKTPEDARRLARAG--ADAVLVGEALMRSPDPGEALRE 253 (254)
T ss_dssp SHTTSEEEEESS-SSHHHHHHHCTTT---SEEEESHHHHTSSSHHHHHHH
T ss_pred CccceeEEeecCCCCHHHHHHHHHCC--CCEEEECHHHhCCCCHHHHHhc
Confidence 32 47799999999999999999887 9999999999999998877653
No 156
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.61 E-value=0.0013 Score=68.26 Aligned_cols=185 Identities=18% Similarity=0.209 Sum_probs=107.3
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc------ccccccc--ChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+.+...+++..+. ..|+|.|||- ++=| .-+| +--+|.+ +.+.+.++++.++....+|+.+ ++
T Consensus 27 ~~~~~~~~~~~l~-~~Gad~iElGiPfSDP----~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vl---m~ 98 (263)
T CHL00200 27 DIVITKKALKILD-KKGADIIELGIPYSDP----LADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVI---FT 98 (263)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCC----CccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE---Ee
Confidence 4456666666664 4599999984 3444 2233 2223332 3567788888888777788643 22
Q ss_pred ccCC-c-hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhcCC
Q psy9514 449 IHKD-N-NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDWGA 517 (611)
Q Consensus 449 ~~~~-~-~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~G~ 517 (611)
+... . --..++++.+.++|++.|.+|.=..+. ..++.+.+++..... .+-+..+.+..-
T Consensus 99 Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee----------~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~ 168 (263)
T CHL00200 99 YYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEE----------SDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAP 168 (263)
T ss_pred cccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHH----------HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCC
Confidence 2210 0 123578999999999999998754221 223333333322211 112222222222
Q ss_pred ceE---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 518 SLI---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 518 ~~i---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.+| +..|-|.........--+++.++. +..++||..-+||+|++++.++...| +|+|+||.+++
T Consensus 169 gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir-~~t~~Pi~vGFGI~~~e~~~~~~~~G--ADGvVVGSalv 235 (263)
T CHL00200 169 GCIYLVSTTGVTGLKTELDKKLKKLIETIK-KMTNKPIILGFGISTSEQIKQIKGWN--INGIVIGSACV 235 (263)
T ss_pred CcEEEEcCCCCCCCCccccHHHHHHHHHHH-HhcCCCEEEECCcCCHHHHHHHHhcC--CCEEEECHHHH
Confidence 233 223433332111111234445544 45689999999999999999999887 99999999885
No 157
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.59 E-value=1.7e-05 Score=53.37 Aligned_cols=24 Identities=38% Similarity=1.027 Sum_probs=17.6
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCcCC
Q psy9514 74 DCYCPFLKDSTLEQTCKYGEKCKFVHD 100 (611)
Q Consensus 74 ~~lC~~~~~~~~~~~C~~g~~C~f~Hd 100 (611)
..+|..|... +.|+||++|+|+|+
T Consensus 3 ~~~C~~f~~~---g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 3 TKLCRFFMRT---GTCPFGDKCRFAHG 26 (27)
T ss_dssp SSB-HHHHHT---S--TTGGGSSSBSS
T ss_pred cccChhhccC---CccCCCCCcCccCC
Confidence 5788888886 57999999999997
No 158
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.58 E-value=0.0004 Score=77.78 Aligned_cols=126 Identities=14% Similarity=0.102 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-----chhhhhcchhhHhcCCceEEe-------
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-----NNIIHNFMPKFRDWGASLITL------- 522 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-----~~~~~~~~~~l~~~G~~~iti------- 522 (611)
...+.+..|.+.|++.|.|....+... .-++.|.++....+.. |-.+.+-+..+.++|++.|-+
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~~~----~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsi 302 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGHQE----KMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAM 302 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCccH----HHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcc
Confidence 456888999999999999876544322 1244555555544332 222345566788999999843
Q ss_pred ---ccccccccccCCccHHHHHHHHhh--CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 523 ---HGRTREQRYTKQADWDYIEKCAQL--CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 523 ---hgrtr~g~~~~~a~~~~i~~~~k~--~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
.+.|.. +.+.+..+.++++. ..++|||+-|+|.++.|+.+++..| +|+||+|..++.-.+-+
T Consensus 303 ctt~~~~~~----~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~g--a~~v~~g~~~ag~~Esp 369 (479)
T PRK07807 303 CTTRMMTGV----GRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAG--ASNVMIGSWFAGTYESP 369 (479)
T ss_pred cccccccCC----chhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcC--CCeeeccHhhccCccCC
Confidence 222222 23678888888763 2379999999999999999999998 99999998777654433
No 159
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=97.56 E-value=0.0057 Score=60.18 Aligned_cols=168 Identities=13% Similarity=0.092 Sum_probs=104.3
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
+++.=+.+.+++++...++.+. ..|++.||+...-| . ..+.++.+++..+ .+ .+-.|.
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~-~~G~~~vev~~~~~-----------------~-~~~~i~~l~~~~~-~~--~iGag~ 62 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALI-EGGIRAIEITLRTP-----------------G-ALEAIRALRKEFP-EA--LIGAGT 62 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCh-----------------h-HHHHHHHHHHHCC-CC--EEEEEe
Confidence 4555577778999999988886 46999999975433 1 2346666666543 12 222221
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-ch--hhhhcchhhHhcCCceEEecccc
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-NN--IIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-~~--~~~~~~~~l~~~G~~~itihgrt 526 (611)
--+ ..-++.+..+|++.|++-+... +.+.-+..+ ... -. ...+.+....+.|++.+-++.-
T Consensus 63 v~~----~~~~~~a~~~Ga~~i~~p~~~~----------~~~~~~~~~-~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~- 126 (190)
T cd00452 63 VLT----PEQADAAIAAGAQFIVSPGLDP----------EVVKAANRA-GIPLLPGVATPTEIMQALELGADIVKLFPA- 126 (190)
T ss_pred CCC----HHHHHHHHHcCCCEEEcCCCCH----------HHHHHHHHc-CCcEECCcCCHHHHHHHHHCCCCEEEEcCC-
Confidence 111 2345667789999986543321 111111111 000 00 0122234456789999987431
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.+...++++.+......+|+++.||| +++.+.++++.| +|+|.++..+.
T Consensus 127 ------~~~g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G--~~~v~v~s~i~ 175 (190)
T cd00452 127 ------EAVGPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAG--VVAVGGGSLLP 175 (190)
T ss_pred ------cccCHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCC--CEEEEEchhcc
Confidence 22245677777665557999999999 999999999998 99999998876
No 160
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=97.56 E-value=0.0044 Score=63.87 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=89.9
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE--c
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR--T 447 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR--~ 447 (611)
|+++|+.-|++.....+|... |++.|-+|.-|-.. +...| .+..+...+.+.-+.+.. ++.|..-++ -
T Consensus 81 p~GvnvL~nd~~aal~iA~a~----ga~FIRv~~~~g~~-~~d~G---~~~~~a~e~~r~r~~l~~--~v~i~adV~~kh 150 (257)
T TIGR00259 81 PLGINVLRNDAVAALAIAMAV----GAKFIRVNVLTGVY-ASDQG---IIEGNAGELIRYKKLLGS--EVKILADIVVKH 150 (257)
T ss_pred CeeeeeecCCCHHHHHHHHHh----CCCEEEEccEeeeE-ecccc---cccccHHHHHHHHHHcCC--CcEEEeceeecc
Confidence 578888888887776666554 88888887544311 22221 233344444444444331 222222222 2
Q ss_pred cccCCchHHHHHHHHHHHc-CCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 448 GIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~a-Gvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
+..-......+.++..... ++|+|.|+|...
T Consensus 151 ~~~l~~~~~~e~a~~~~~~~~aDavivtG~~T------------------------------------------------ 182 (257)
T TIGR00259 151 AVHLGNRDLESIALDTVERGLADAVILSGKTT------------------------------------------------ 182 (257)
T ss_pred cCcCCCCCHHHHHHHHHHhcCCCEEEECcCCC------------------------------------------------
Confidence 2211112344555554444 489999988652
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
..+.+|+.+.++.+...++||+.+||| +++.+.+++.. +|+|.||.++=
T Consensus 183 -----G~~~d~~~l~~vr~~~~~~PvllggGv-t~eNv~e~l~~---adGviVgS~~K 231 (257)
T TIGR00259 183 -----GTEVDLELLKLAKETVKDTPVLAGSGV-NLENVEELLSI---ADGVIVATTIK 231 (257)
T ss_pred -----CCCCCHHHHHHHHhccCCCeEEEECCC-CHHHHHHHHhh---CCEEEECCCcc
Confidence 223567777777654567899999999 69999999984 89999998865
No 161
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00024 Score=71.11 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=75.4
Q ss_pred hhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 505 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 505 ~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
..+++..+.+.|++-+++...|.... .....++.++++++. .-||+...|||.|.+|+.++|..| +|=|.|..+++
T Consensus 32 pVelA~~Y~e~GADElvFlDItAs~~-gr~~~~~vv~r~A~~-vfiPltVGGGI~s~eD~~~ll~aG--ADKVSINsaAv 107 (256)
T COG0107 32 PVELAKRYNEEGADELVFLDITASSE-GRETMLDVVERVAEQ-VFIPLTVGGGIRSVEDARKLLRAG--ADKVSINSAAV 107 (256)
T ss_pred hHHHHHHHHHcCCCeEEEEecccccc-cchhHHHHHHHHHhh-ceeeeEecCCcCCHHHHHHHHHcC--CCeeeeChhHh
Confidence 35678889999999999988888642 234578889998876 489999999999999999999998 99999999999
Q ss_pred hCCchHHHHHc
Q psy9514 585 IKPWIFQEIKE 595 (611)
Q Consensus 585 ~dP~lf~ei~~ 595 (611)
.||.+.+++.+
T Consensus 108 ~~p~lI~~~a~ 118 (256)
T COG0107 108 KDPELITEAAD 118 (256)
T ss_pred cChHHHHHHHH
Confidence 99999999864
No 162
>KOG1606|consensus
Probab=97.55 E-value=0.00024 Score=69.87 Aligned_cols=154 Identities=18% Similarity=0.309 Sum_probs=92.9
Q ss_pred ccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHH
Q psy9514 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~ 493 (611)
..|-+-|.+|..+.+| ..++.+|+..|.|+|.. --++.|+..|+|+|.-+- .-.+|||+-
T Consensus 58 ~GgV~RMsDP~mIKei----~~aVsiPVMAk~RiGHF-------VEAQIlE~l~vDYiDESE------vlt~AD~~h--- 117 (296)
T KOG1606|consen 58 QGGVARMSDPRMIKEI----KNAVSIPVMAKVRIGHF-------VEAQILEALGVDYIDESE------VLTPADWDH--- 117 (296)
T ss_pred cCCeeecCCHHHHHHH----HHhccchhhhhhhhhhh-------hHHHHHHHhccCccchhh------hcccccccc---
Confidence 3466788899876555 44567899999999842 125678999999875322 224567751
Q ss_pred HhhhcccCchh---------hhhcchhhHhcCCceEEecccccccc-----------------cc-------------CC
Q psy9514 494 CAQLCSRDNNI---------IHNFMPKFRDWGASLITLHGRTREQR-----------------YT-------------KQ 534 (611)
Q Consensus 494 ~~~~~~~~~~~---------~~~~~~~l~~~G~~~itihgrtr~g~-----------------~~-------------~~ 534 (611)
-|.+.|-+ +-+....++ -|+.+|...|-...|- +. -.
T Consensus 118 ---hI~KhnFkvPFvCG~rdlGEALRRI~-EGAAMIRtkGeagTG~v~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~ 193 (296)
T KOG1606|consen 118 ---HIEKHNFKVPFVCGCRDLGEALRRIR-EGAAMIRTKGEAGTGDVSEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIA 193 (296)
T ss_pred ---hhhhhcCcCceeeccccHHHHHHHHh-hchhhheeccccCCCcHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 11111111 001111221 2444543333221110 00 01
Q ss_pred ccHHHHHHHHhhCCCCcEE--EecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 535 ADWDYIEKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVI--gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+-++.+.+..+ ...+||+ +.|||.||.|+.-+++.| ||+|.+|.|.+.-++-+.+..
T Consensus 194 aP~dLv~~t~q-~GrlPVV~FAaGGvaTPADAALmMQLG--CdGVFVGSgiFks~dP~k~a~ 252 (296)
T KOG1606|consen 194 APYDLVKQTKQ-LGRLPVVNFAAGGVATPADAALMMQLG--CDGVFVGSGIFKSGDPVKRAR 252 (296)
T ss_pred CcHHHHHHHHH-cCCCceEEecccCcCChhHHHHHHHcC--CCeEEeccccccCCCHHHHHH
Confidence 12344444433 3578886 899999999999999998 999999999999888777654
No 163
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.53 E-value=0.021 Score=58.27 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=43.7
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCch
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
+..+...++.++.. .++|||.-+||.+++|+.++++.| +|+|.+..|...-++.
T Consensus 174 Gl~n~~~l~~i~e~-~~vpVivdAGIgt~sDa~~AmElG--aDgVL~nSaIakA~dP 227 (267)
T CHL00162 174 GLQNLLNLQIIIEN-AKIPVIIDAGIGTPSEASQAMELG--ASGVLLNTAVAQAKNP 227 (267)
T ss_pred CCCCHHHHHHHHHc-CCCcEEEeCCcCCHHHHHHHHHcC--CCEEeecceeecCCCH
Confidence 33455666666554 579999999999999999999998 9999999998864443
No 164
>PLN02334 ribulose-phosphate 3-epimerase
Probab=97.52 E-value=0.0018 Score=65.52 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=43.6
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+.+.++.+...++||.+-||| +++.+.++++.| +|+|++|++++..+++.+.++
T Consensus 162 ~~~i~~~~~~~~~~~I~a~GGI-~~e~i~~l~~aG--ad~vvvgsai~~~~d~~~~~~ 216 (229)
T PLN02334 162 MDKVRALRKKYPELDIEVDGGV-GPSTIDKAAEAG--ANVIVAGSAVFGAPDYAEVIS 216 (229)
T ss_pred HHHHHHHHHhCCCCcEEEeCCC-CHHHHHHHHHcC--CCEEEEChHHhCCCCHHHHHH
Confidence 4556665555456899999999 799999999998 999999999987777544443
No 165
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.49 E-value=0.0061 Score=63.06 Aligned_cols=184 Identities=11% Similarity=0.113 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc------ccccccc--ChHHHHHHHHHHH-hhcCCCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMN-EVSSLPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~-~~~~~PvtVKiR~ 447 (611)
+.+...+++..+. ..|+|.|||- ++=| .-+| +--+|.+ +.+.+.++++.++ ...++|+.+-
T Consensus 24 ~~~~~~~~~~~l~-~~Gad~iElGiPfSDP----~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm--- 95 (258)
T PRK13111 24 DLETSLEIIKALV-EAGADIIELGIPFSDP----VADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM--- 95 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCC----cccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE---
Confidence 4556667666654 3599999994 3334 2233 2223333 3456778888888 4457887543
Q ss_pred cccCC--chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhh---------hcchhhHhcC
Q psy9514 448 GIHKD--NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH---------NFMPKFRDWG 516 (611)
Q Consensus 448 g~~~~--~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~---------~~~~~l~~~G 516 (611)
++... .--..++++.+.++|++.+.|-.=. ++.+.++...+++...... +-+..+....
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp----------~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s 165 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIPDLP----------PEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA 165 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEECCCC----------HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 22110 0124478999999999999884321 2334444444444332211 1223344444
Q ss_pred CceE---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 517 ASLI---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 517 ~~~i---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
...| .+.|.|....-......+++.++.+ ..++||+..+||.|++++.+++. . +|+|.||.+++
T Consensus 166 ~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~-~~~~pv~vGfGI~~~e~v~~~~~-~--ADGviVGSaiv 232 (258)
T PRK13111 166 SGFVYYVSRAGVTGARSADAADLAELVARLKA-HTDLPVAVGFGISTPEQAAAIAA-V--ADGVIVGSALV 232 (258)
T ss_pred CCcEEEEeCCCCCCcccCCCccHHHHHHHHHh-cCCCcEEEEcccCCHHHHHHHHH-h--CCEEEEcHHHH
Confidence 4444 3344444422222223456777655 45899999999999999999885 4 99999998876
No 166
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.49 E-value=0.001 Score=67.04 Aligned_cols=60 Identities=25% Similarity=0.354 Sum_probs=52.9
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHccc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~ 597 (611)
.+++.++++.+. ..+||...|+|.+.+|++++++.| +|.|++|..++.+|.++.++.+.-
T Consensus 59 ~~~~~i~~i~~~-~~~pi~~ggGI~~~ed~~~~~~~G--a~~vvlgs~~l~d~~~~~~~~~~~ 118 (230)
T TIGR00007 59 VNLPVIKKIVRE-TGVPVQVGGGIRSLEDVEKLLDLG--VDRVIIGTAAVENPDLVKELLKEY 118 (230)
T ss_pred CcHHHHHHHHHh-cCCCEEEeCCcCCHHHHHHHHHcC--CCEEEEChHHhhCHHHHHHHHHHh
Confidence 467788888776 489999999999999999999987 999999999999999998886653
No 167
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=97.48 E-value=0.003 Score=68.88 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=95.5
Q ss_pred HHHHHHHHhh-cCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh-
Q psy9514 427 QSVITCMNEV-SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI- 504 (611)
Q Consensus 427 ~eIv~av~~~-~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~- 504 (611)
.++++.+++. .+.+|.+-+.+- + .+. .+++.+.++|++++|+|+-... ..+..+.+.+++....
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~--D-i~~--~vv~~~a~aGAD~vTVH~ea~~---------~ti~~ai~~akk~Gikv 279 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTL--D-TGN--LEARMAADATADAVVISGLAPI---------STIEKAIHEAQKTGIYS 279 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEeccc--C-hhh--HHHHHHHhcCCCEEEEeccCCH---------HHHHHHHHHHHHcCCEE
Confidence 4567778776 356777776653 1 122 2378889999999999986422 2344555554443322
Q ss_pred ---------hhhcchhhHhcCCceEEecc-ccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 505 ---------IHNFMPKFRDWGASLITLHG-RTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 505 ---------~~~~~~~l~~~G~~~itihg-rtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
..+.+..+ ..+++.+.+|. .... .....|..++++.+...+++|...|||. .+.+.++++.| +
T Consensus 280 gVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~---~~~~~~~kI~~ikk~~~~~~I~VdGGI~-~eti~~l~~aG--A 352 (391)
T PRK13307 280 ILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEE---GTEHAWGNIKEIKKAGGKILVAVAGGVR-VENVEEALKAG--A 352 (391)
T ss_pred EEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCC---cccchHHHHHHHHHhCCCCcEEEECCcC-HHHHHHHHHcC--C
Confidence 11222333 56889998884 3322 2244677777776655578999999997 99999999987 9
Q ss_pred cEEEEcHHhhhCCch
Q psy9514 575 SGVMIGRGALIKPWI 589 (611)
Q Consensus 575 D~VmIGRgaL~dP~l 589 (611)
|.+++||++...++.
T Consensus 353 DivVVGsaIf~a~Dp 367 (391)
T PRK13307 353 DILVVGRAITKSKDV 367 (391)
T ss_pred CEEEEeHHHhCCCCH
Confidence 999999998866654
No 168
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.47 E-value=0.0072 Score=59.79 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=58.9
Q ss_pred hhhHhcCCceEEeccccccc---cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 510 PKFRDWGASLITLHGRTREQ---RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 510 ~~l~~~G~~~itihgrtr~g---~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
....+.|++.+.++...... .+.....++.+.++.+...++||++-||| +.+++.+++..| +|+|.+|+++...
T Consensus 118 ~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~G--a~gv~~gs~i~~~ 194 (212)
T PRK00043 118 AAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAG--ADGVAVVSAITGA 194 (212)
T ss_pred HHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEeHHhhcC
Confidence 34446799999875433321 12222347888888776544999999999 799999999997 9999999998877
Q ss_pred CchHHHH
Q psy9514 587 PWIFQEI 593 (611)
Q Consensus 587 P~lf~ei 593 (611)
++..+.+
T Consensus 195 ~d~~~~~ 201 (212)
T PRK00043 195 EDPEAAA 201 (212)
T ss_pred CCHHHHH
Confidence 7654433
No 169
>PLN02591 tryptophan synthase
Probab=97.46 E-value=0.0043 Score=63.90 Aligned_cols=185 Identities=13% Similarity=0.154 Sum_probs=107.7
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc------ccccccc--ChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+.+...+++..+. ..|+|.|||- ++=| .-+| +--+|.+ +.+.+.++++.++....+|+.+- +
T Consensus 14 ~~e~~~~~~~~l~-~~Gad~iElGiPfSDP----~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm---~ 85 (250)
T PLN02591 14 DLDTTAEALRLLD-ACGADVIELGVPYSDP----LADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLF---T 85 (250)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCCCCC----cccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE---e
Confidence 4566777777664 3699999984 3444 2233 2223332 45577788888887677886532 2
Q ss_pred ccCC--chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhh---------cchhhHhcCC
Q psy9514 449 IHKD--NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN---------FMPKFRDWGA 517 (611)
Q Consensus 449 ~~~~--~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~---------~~~~l~~~G~ 517 (611)
+... ..-..++++.+.++|++.+.+-.=. ++...++...+++......- -+..+....-
T Consensus 86 Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP----------~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~ 155 (250)
T PLN02591 86 YYNPILKRGIDKFMATIKEAGVHGLVVPDLP----------LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASE 155 (250)
T ss_pred cccHHHHhHHHHHHHHHHHcCCCEEEeCCCC----------HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCC
Confidence 2110 1124578889999999998775322 22233333333332222111 1122222222
Q ss_pred ceE---EeccccccccccCCccH-HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 518 SLI---TLHGRTREQRYTKQADW-DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 518 ~~i---tihgrtr~g~~~~~a~~-~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.+| ...|.|...... +... ++++.+.+ ..++||+..-||+|++++.+++..| +|||.||.+++.
T Consensus 156 gFIY~Vs~~GvTG~~~~~-~~~~~~~i~~vk~-~~~~Pv~vGFGI~~~e~v~~~~~~G--ADGvIVGSalVk 223 (250)
T PLN02591 156 GFVYLVSSTGVTGARASV-SGRVESLLQELKE-VTDKPVAVGFGISKPEHAKQIAGWG--ADGVIVGSAMVK 223 (250)
T ss_pred CcEEEeeCCCCcCCCcCC-chhHHHHHHHHHh-cCCCceEEeCCCCCHHHHHHHHhcC--CCEEEECHHHHH
Confidence 333 234444432111 2233 44566544 5799999999999999999999987 999999998864
No 170
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=97.46 E-value=0.0058 Score=63.07 Aligned_cols=134 Identities=12% Similarity=0.108 Sum_probs=95.0
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCC--CEEEEEE
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL--PITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~--PvtVKiR 446 (611)
.++...+...+++.+.+.++.+. ..||..+-|+.| .+++.-.+++++|++.++. ++.+...
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~KiKvg----------------~~~~~d~~~v~~vr~~~g~~~~l~vDan 137 (265)
T cd03315 75 VRVAHMLGLGEPAEVAEEARRAL-EAGFRTFKLKVG----------------RDPARDVAVVAALREAVGDDAELRVDAN 137 (265)
T ss_pred eEEEEEecCCCHHHHHHHHHHHH-HCCCCEEEEecC----------------CCHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 45555555567777777666654 348998888754 1245567888999998854 4444444
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccc
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrt 526 (611)
.+++ .+++.++++.|++.|+++|.- .
T Consensus 138 ~~~~--~~~a~~~~~~l~~~~i~~iEe-------P--------------------------------------------- 163 (265)
T cd03315 138 RGWT--PKQAIRALRALEDLGLDYVEQ-------P--------------------------------------------- 163 (265)
T ss_pred CCcC--HHHHHHHHHHHHhcCCCEEEC-------C---------------------------------------------
Confidence 3443 478999999999998887631 1
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
....+++.++++.+. .++||.+.+.+.++.++.++++.+ .+|.|++=
T Consensus 164 -----~~~~d~~~~~~l~~~-~~ipia~dE~~~~~~~~~~~i~~~-~~d~v~~k 210 (265)
T cd03315 164 -----LPADDLEGRAALARA-TDTPIMADESAFTPHDAFRELALG-AADAVNIK 210 (265)
T ss_pred -----CCcccHHHHHHHHhh-CCCCEEECCCCCCHHHHHHHHHhC-CCCEEEEe
Confidence 112355666666554 589999999999999999999887 79999884
No 171
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=97.46 E-value=0.0032 Score=64.84 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=90.8
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCC--EEEEEE
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP--ITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~P--vtVKiR 446 (611)
.|+++|+..|++.....+|... |+|.|-+|.-|-.. +... |.+..+...+.+. |+.++.. |..-+.
T Consensus 81 ~p~GVnvL~nd~~aalaiA~A~----ga~FIRv~~~~g~~-~~d~---G~~~~~a~e~~r~----R~~l~a~v~ilaDV~ 148 (254)
T PF03437_consen 81 VPVGVNVLRNDPKAALAIAAAT----GADFIRVNVFVGAY-VTDE---GIIEGCAGELLRY----RKRLGADVKILADVH 148 (254)
T ss_pred CCEEeeeecCCCHHHHHHHHHh----CCCEEEecCEEcee-cccC---ccccccHHHHHHH----HHHcCCCeEEEeeec
Confidence 4678899998887777666554 78888877544311 1111 2223333333332 3333333 221111
Q ss_pred c--cccCCchHHHHHHH-HHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEec
Q psy9514 447 T--GIHKDNNIIHNFMP-KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLH 523 (611)
Q Consensus 447 ~--g~~~~~~~a~~la~-~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itih 523 (611)
. +..-......+.++ .++..++|+|.|+|...
T Consensus 149 ~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~T--------------------------------------------- 183 (254)
T PF03437_consen 149 VKHSSPLATRDLEEAAKDAVERGGADAVIVTGKAT--------------------------------------------- 183 (254)
T ss_pred hhhcccCCCCCHHHHHHHHHHhcCCCEEEECCccc---------------------------------------------
Confidence 1 11111111223333 44778899999888652
Q ss_pred cccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 524 grtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
-.+++.+.+.++.+.. ++||+.++|+ |++.+.+++.. +||+.||..+-.+=.|.+.
T Consensus 184 --------G~~~~~~~l~~vr~~~-~~PVlvGSGv-t~~Ni~~~l~~---ADG~IVGS~~K~~G~~~n~ 239 (254)
T PF03437_consen 184 --------GEPPDPEKLKRVREAV-PVPVLVGSGV-TPENIAEYLSY---ADGAIVGSYFKKDGKWENP 239 (254)
T ss_pred --------CCCCCHHHHHHHHhcC-CCCEEEecCC-CHHHHHHHHHh---CCEEEEeeeeeeCCEeCCc
Confidence 2334667777776655 5999999999 79999999975 8999999877655444443
No 172
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.45 E-value=0.0008 Score=68.55 Aligned_cols=60 Identities=15% Similarity=0.285 Sum_probs=53.8
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
+.+.+.|+++++. ..+||..-|||+|.+|+++++..| |+-|.||..++.||.+++++.+.
T Consensus 62 ~~n~~~I~~i~~~-~~~pi~vGGGIrs~e~v~~~l~~G--a~kvvigt~a~~~~~~l~~~~~~ 121 (234)
T PRK13587 62 AREFDYIKSLRRL-TTKDIEVGGGIRTKSQIMDYFAAG--INYCIVGTKGIQDTDWLKEMAHT 121 (234)
T ss_pred cchHHHHHHHHhh-cCCeEEEcCCcCCHHHHHHHHHCC--CCEEEECchHhcCHHHHHHHHHH
Confidence 3567888888874 579999999999999999999997 99999999999999999998654
No 173
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=97.44 E-value=0.0069 Score=60.53 Aligned_cols=169 Identities=13% Similarity=0.089 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc------c-----
Q psy9514 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG------I----- 449 (611)
Q Consensus 381 ~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g------~----- 449 (611)
+.+.+.++.+. ..|.|+|+| |++.--..+.+.++++++++..++|+.+-..-. .
T Consensus 11 e~~~~ia~~v~-~~gtDaI~V--------------GGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~~~i~~~aD~~~~ 75 (205)
T TIGR01769 11 DEIEKIAKNAK-DAGTDAIMV--------------GGSLGIVESNLDQTVKKIKKITNLPVILFPGNVNGLSRYADAVFF 75 (205)
T ss_pred HHHHHHHHHHH-hcCCCEEEE--------------cCcCCCCHHHHHHHHHHHHhhcCCCEEEECCCccccCcCCCEEEE
Confidence 34455555543 358899877 444444778899999999998899998752210 0
Q ss_pred ----cCCchH----H-HHHHHHHHHcCC-----CEEEEEccccccccccCcChhHHHHHhhhcccC-chhhhhcchhhHh
Q psy9514 450 ----HKDNNI----I-HNFMPKFRDWGA-----SLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-NNIIHNFMPKFRD 514 (611)
Q Consensus 450 ----~~~~~~----a-~~la~~l~~aGv-----d~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-~~~~~~~~~~l~~ 514 (611)
+...+. + ...+..+.+.|. .+|.+.......+.++ +..++.. .+....++...+.
T Consensus 76 ~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~----------a~~ip~~~~e~~~~~a~aa~~ 145 (205)
T TIGR01769 76 MSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGK----------AREIPYNKPEIAAAYCLAAKY 145 (205)
T ss_pred EEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecC----------cccCCCCCHHHHHHHHHHHHH
Confidence 000111 1 122222334443 3444544332222110 0112222 1223445566677
Q ss_pred cCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 515 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 515 ~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.|.+.+-+-.-+ | ...+.+.++++++.+.. ++|++..|||+|++++++++..| +|+|.+|
T Consensus 146 ~G~~~i~Le~~s--G-a~~~v~~e~i~~Vk~~~-~~Pv~vGGGIrs~e~a~~l~~~G--AD~VVVG 205 (205)
T TIGR01769 146 FGMKWVYLEAGS--G-ASYPVNPETISLVKKAS-GIPLIVGGGIRSPEIAYEIVLAG--ADAIVTG 205 (205)
T ss_pred cCCCEEEEEcCC--C-CCCCCCHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHcC--CCEEEeC
Confidence 788887552211 1 23335678888887654 89999999999999999999887 9999997
No 174
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=97.44 E-value=0.01 Score=57.39 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=60.3
Q ss_pred chhhHhcCCceEEecccccc---ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 509 MPKFRDWGASLITLHGRTRE---QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 509 ~~~l~~~G~~~itihgrtr~---g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+..+.+.|++.+.+...... +.+..+..++.++++.+. .++||++-||| +.+++.+++..| +|+|++|++++.
T Consensus 108 ~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pv~a~GGi-~~~~i~~~~~~G--a~~i~~g~~i~~ 183 (196)
T cd00564 108 ALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL-VEIPVVAIGGI-TPENAAEVLAAG--ADGVAVISAITG 183 (196)
T ss_pred HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHcC--CCEEEEehHhhc
Confidence 34556679999987544221 112244568888887654 58999999999 579999999987 999999999988
Q ss_pred CCchHHHHH
Q psy9514 586 KPWIFQEIK 594 (611)
Q Consensus 586 dP~lf~ei~ 594 (611)
.++....++
T Consensus 184 ~~~~~~~~~ 192 (196)
T cd00564 184 ADDPAAAAR 192 (196)
T ss_pred CCCHHHHHH
Confidence 776555443
No 175
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=97.44 E-value=0.0077 Score=61.78 Aligned_cols=166 Identities=19% Similarity=0.112 Sum_probs=102.9
Q ss_pred hcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 393 ~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
..|+.+|=++ .-...+|+++ +.++.++..+.+||..| +..-+-..+..... +|+|+|-
T Consensus 72 ~~GA~aISVl-------Te~~~F~Gs~--------~~l~~v~~~v~~PvL~K------DFIid~~QI~ea~~-~GADavL 129 (247)
T PRK13957 72 TLGASAISVL-------TDQSYFGGSL--------EDLKSVSSELKIPVLRK------DFILDEIQIREARA-FGASAIL 129 (247)
T ss_pred HCCCcEEEEE-------cCCCcCCCCH--------HHHHHHHHhcCCCEEec------cccCCHHHHHHHHH-cCCCEEE
Confidence 3578888553 2233466664 55677777788999887 22222334444443 9999999
Q ss_pred EEccccccccccCcChhHHHHHhhhcccCchh----hh--hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhh
Q psy9514 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----IH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL 546 (611)
Q Consensus 473 vhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----~~--~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~ 546 (611)
++.+.-... .+.++.......... .+ .-+....++|++.|-+.-|.-. +-..+.....+++..
T Consensus 130 LI~~~L~~~--------~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~---t~~vd~~~~~~L~~~ 198 (247)
T PRK13957 130 LIVRILTPS--------QIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLD---TFQIHQNLVEEVAAF 198 (247)
T ss_pred eEHhhCCHH--------HHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhh
Confidence 998864321 122222222222111 11 1233456678887776655443 223345555555554
Q ss_pred CC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 547 CS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 547 ~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+ ++.+|+.+||.|++|+..+.. + +|+|.||.+++..++.-..++
T Consensus 199 ip~~~~~IsESGI~t~~d~~~l~~-~--~davLvG~~lm~~~d~~~~~~ 244 (247)
T PRK13957 199 LPPNIVKVGESGIESRSDLDKFRK-L--VDAALIGTYFMEKKDIRKAWL 244 (247)
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHH-h--CCEEEECHHHhCCCCHHHHHH
Confidence 43 467899999999999999764 4 999999999999998776654
No 176
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=97.39 E-value=0.0021 Score=68.92 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=41.2
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
...+.+++..+..||||+.|||.+.+++..++..| +|+|.+|+.+|.=
T Consensus 172 ~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalG--A~gVq~GT~Fl~t 219 (336)
T COG2070 172 FALVPEVVDAVDGIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLAT 219 (336)
T ss_pred HHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhc--cHHHHhhhhhhcc
Confidence 46677777665339999999999999999999998 9999999998873
No 177
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=97.35 E-value=0.01 Score=65.78 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCE-EEEEEccccCCchHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI-TVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~Pv-tVKiR~g~~~~~~~a~ 457 (611)
+.+++.+.++.+. ..|++.||++ -| .. .....+.++.+++..+.++ ..-+|+-. - + .
T Consensus 14 ~~~~~~~~~~~~~-~~Gv~~ie~g--~p---~~-----------~~~~~~~i~~l~~~~~~~~ii~D~kl~d--~-g--~ 71 (430)
T PRK07028 14 ELDRAVEIAKEAV-AGGADWIEAG--TP---LI-----------KSEGMNAIRTLRKNFPDHTIVADMKTMD--T-G--A 71 (430)
T ss_pred CHHHHHHHHHHHH-hcCCcEEEeC--CH---HH-----------HHhhHHHHHHHHHHCCCCEEEEEeeecc--c-h--H
Confidence 6677777777753 3589999874 23 11 1112455666665544333 32333311 1 1 2
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC---------c-hhhhhcchhhHhcCCceEEeccccc
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD---------N-NIIHNFMPKFRDWGASLITLHGRTR 527 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~---------~-~~~~~~~~~l~~~G~~~itihgrtr 527 (611)
..++.+.++|++.|++|+-.... .+.++...+++. . ....+.+..+.+.|++.|.++....
T Consensus 72 ~~v~~a~~aGAdgV~v~g~~~~~---------~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~ 142 (430)
T PRK07028 72 IEVEMAAKAGADIVCILGLADDS---------TIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHVGID 142 (430)
T ss_pred HHHHHHHHcCCCEEEEecCCChH---------HHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccc
Confidence 36778889999999999753110 111111111111 1 1112234556678999997653211
Q ss_pred cccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 528 EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 528 ~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
.+. .+...++.++++.+. .++||++-||| +.+.+.++++.| +|+|.+|++++..+++-+.
T Consensus 143 ~~~-~~~~~~~~l~~l~~~-~~iPI~a~GGI-~~~n~~~~l~aG--Adgv~vGsaI~~~~d~~~~ 202 (430)
T PRK07028 143 QQM-LGKDPLELLKEVSEE-VSIPIAVAGGL-DAETAAKAVAAG--ADIVIVGGNIIKSADVTEA 202 (430)
T ss_pred hhh-cCCChHHHHHHHHhh-CCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChHHcCCCCHHHH
Confidence 111 123346778877655 46999999999 689999999998 9999999999987765433
No 178
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=97.32 E-value=0.00068 Score=68.78 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=51.4
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.+++.|.++++.. .+||...|||.|.+|+++++..| ++-|.||..++.||++++++.+.
T Consensus 60 ~n~~~i~~i~~~~-~~~i~vgGGIrs~ed~~~ll~~G--a~~Vvigt~~~~~~~~l~~~~~~ 118 (229)
T PF00977_consen 60 SNLELIKEIAKET-GIPIQVGGGIRSIEDAERLLDAG--ADRVVIGTEALEDPELLEELAER 118 (229)
T ss_dssp HHHHHHHHHHHHS-SSEEEEESSE-SHHHHHHHHHTT---SEEEESHHHHHCCHHHHHHHHH
T ss_pred hHHHHHHHHHhcC-CccEEEeCccCcHHHHHHHHHhC--CCEEEeChHHhhchhHHHHHHHH
Confidence 4678888888775 69999999999999999999998 99999999999999999998763
No 179
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.31 E-value=0.0034 Score=66.13 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=90.3
Q ss_pred CCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchh--hccCCCcccc----c-----cccceeeecccCch
Q psy9514 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFI--YKQGSGSGLL----Q-----RANLFGVQLCGNNP 380 (611)
Q Consensus 312 ~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~--~~~~~~~~l~----~-----~~~~~ivQi~g~~p 380 (611)
.+.++++||.|++++.+..+++.+.+.+++|+|+||++||.... +.-....+++ . -+.++.+-+.. +.
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-~~ 168 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-NV 168 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-Cc
Confidence 36789999999999999999999877544899999999997431 0000011111 1 14677777764 33
Q ss_pred HHHHHHHHHHHHhcccceEEe-ccCCCc--cc-----eeccccccccccC--hHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 381 YVLTKCTQLLEEQMVVDFVDV-NLGCPI--EF-----IYKQGSGSGLLQR--ANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 381 ~~~~~aA~~l~~~~g~D~IEL-N~gCP~--~~-----v~~~g~GsaLl~r--~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
+++.+.|+.+. ..|+|+|.+ |...-. +. ....++|+ +... .....+.+..+++.+++||+.- |.-
T Consensus 169 ~~~~~~a~~l~-~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg-~sg~~~~p~~l~~v~~i~~~~~ipvi~~---GGI 243 (301)
T PRK07259 169 TDIVEIAKAAE-EAGADGLSLINTLKGMAIDIKTRKPILANVTGG-LSGPAIKPIALRMVYQVYQAVDIPIIGM---GGI 243 (301)
T ss_pred hhHHHHHHHHH-HcCCCEEEEEccccccccccccCceeecCCcCc-cCCcCcccccHHHHHHHHHhCCCCEEEE---CCC
Confidence 46667777664 469999987 322110 00 00112222 1111 1135677777888788887763 221
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
.+ .....+.+ .+|+|+|.+-
T Consensus 244 ~~---~~da~~~l-~aGAd~V~ig 263 (301)
T PRK07259 244 SS---AEDAIEFI-MAGASAVQVG 263 (301)
T ss_pred CC---HHHHHHHH-HcCCCceeEc
Confidence 22 22333444 4899988763
No 180
>PRK04302 triosephosphate isomerase; Provisional
Probab=97.26 E-value=0.004 Score=62.85 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.5
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
.++||+..|+|.+++++..+++.| +|+|.||++++.-+++-.-+
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~~~~~~~ 215 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAKDPEAAL 215 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCcCHHHHH
Confidence 479999999999999999999887 99999999998766654433
No 181
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.26 E-value=0.0032 Score=66.29 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=92.8
Q ss_pred CCCeEEEEecCCChhhHHHHHHHHhhhc--cceeeeccCCCCcchhhccC-CCcccc----c-----cccceeeecccC-
Q psy9514 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFVDVNLGCPIEFIYKQG-SGSGLL----Q-----RANLFGVQLCGN- 378 (611)
Q Consensus 312 ~e~~~~vQi~g~~p~~~~~~a~~l~~~~--~v~~idln~gcp~~~~~~~~-~~~~l~----~-----~~~~~ivQi~g~- 378 (611)
.+.++++||+|. ++.+..+++.+.+.. ++|+|++|++||....-... ...+++ + ...|+.+-+.-+
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 467999999999 999999888887755 68999999999974211000 011111 1 147888887755
Q ss_pred chHHHHHHHHHHHHhc-ccceEEe-cc-----------CCCccceeccccccccc--cChHHHHHHHHHHHhhcC--CCE
Q psy9514 379 NPYVLTKCTQLLEEQM-VVDFVDV-NL-----------GCPIEFIYKQGSGSGLL--QRANILQSVITCMNEVSS--LPI 441 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~-g~D~IEL-N~-----------gCP~~~v~~~g~GsaLl--~r~~~l~eIv~av~~~~~--~Pv 441 (611)
+...+.++|+.+.+.. |+|+|=+ |- .-|.- ....++|+.-- -++ ...++|+.+++.++ +||
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~-~~~~~~gG~SG~~i~~-~al~~v~~~~~~~~~~ipI 246 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVL-KPKTGFGGLAGAYLHP-LALGNVRTFRRLLPSEIQI 246 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCccc-CCCCCCCCcCchhhHH-HHHHHHHHHHHhcCCCCCE
Confidence 4556778888776443 7887763 21 22210 01234443211 122 33466777777774 776
Q ss_pred EEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 442 TVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 442 tVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
+.- | +.......++.+. +|+++|.|--
T Consensus 247 ig~---G---GI~s~~da~e~l~-aGA~~Vqv~t 273 (294)
T cd04741 247 IGV---G---GVLDGRGAFRMRL-AGASAVQVGT 273 (294)
T ss_pred EEe---C---CCCCHHHHHHHHH-cCCCceeEch
Confidence 552 3 2233445555565 8999988743
No 182
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=97.25 E-value=0.022 Score=57.26 Aligned_cols=167 Identities=13% Similarity=0.076 Sum_probs=110.4
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCC-C-EEEEEE
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL-P-ITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~-P-vtVKiR 446 (611)
.+++.=+.+.+++++...++.+. ..|+..||+=+..| ...+.++.+++..+. | +.|.
T Consensus 13 ~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~------------------~a~~~i~~l~~~~~~~p~~~vG-- 71 (213)
T PRK06552 13 NGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNP------------------FASEVIKELVELYKDDPEVLIG-- 71 (213)
T ss_pred CCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCc------------------cHHHHHHHHHHHcCCCCCeEEe--
Confidence 34555577889999999999986 45999999976555 135677777776532 3 4443
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceE
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLI 520 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~i 520 (611)
.|.-- ..+-++...++|+++|.--+-. .++.+.+.+.+.. +...+....+.|++.+
T Consensus 72 aGTV~----~~~~~~~a~~aGA~FivsP~~~--------------~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~v 133 (213)
T PRK06552 72 AGTVL----DAVTARLAILAGAQFIVSPSFN--------------RETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIV 133 (213)
T ss_pred eeeCC----CHHHHHHHHHcCCCEEECCCCC--------------HHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEE
Confidence 33222 2345678889999987522221 1222222222111 1223334567899999
Q ss_pred EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 521 tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
-+... ......+++.+...++.+|+++.|||+ .+.+.+++..| +++|.+|..++
T Consensus 134 klFPa-------~~~G~~~ik~l~~~~p~ip~~atGGI~-~~N~~~~l~aG--a~~vavgs~l~ 187 (213)
T PRK06552 134 KLFPG-------STLGPSFIKAIKGPLPQVNVMVTGGVN-LDNVKDWFAAG--ADAVGIGGELN 187 (213)
T ss_pred EECCc-------ccCCHHHHHHHhhhCCCCEEEEECCCC-HHHHHHHHHCC--CcEEEEchHHh
Confidence 87431 112357788887777779999999995 89999999998 99999998875
No 183
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=97.24 E-value=0.0014 Score=67.27 Aligned_cols=57 Identities=21% Similarity=0.150 Sum_probs=50.6
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC----CchHHHHHcc
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK----PWIFQEIKEK 596 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d----P~lf~ei~~g 596 (611)
+.+.|.++++. .++||...|||++ +++++++..| ||.|.||..++.| |.+++++.+.
T Consensus 64 n~~~i~~i~~~-~~~~v~vGGGIr~-e~v~~~l~aG--a~rVvIGS~av~~~~i~~~~~~~i~~~ 124 (253)
T TIGR02129 64 NDDAAKEALHA-YPGGLQVGGGIND-TNAQEWLDEG--ASHVIVTSWLFTKGKFDLKRLKEIVSL 124 (253)
T ss_pred cHHHHHHHHHh-CCCCEEEeCCcCH-HHHHHHHHcC--CCEEEECcHHHhCCCCCHHHHHHHHHH
Confidence 67888888876 4799999999997 9999999998 9999999999998 7799888664
No 184
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.21 E-value=0.0074 Score=63.32 Aligned_cols=155 Identities=14% Similarity=0.055 Sum_probs=91.6
Q ss_pred ccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccC--CCcccc--------cc-ccceeeecccC
Q psy9514 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQG--SGSGLL--------QR-ANLFGVQLCGN 378 (611)
Q Consensus 310 h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~--~~~~l~--------~~-~~~~ivQi~g~ 378 (611)
+..+.++++||.|..++.+..+++.+.+. ++|+|++|++||........ ...+++ .. +.++.+.+..+
T Consensus 86 ~~~~~p~ivsi~g~~~~~~~~~a~~~~~~-G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~ 164 (296)
T cd04740 86 REFGTPVIASIAGSTVEEFVEVAEKLADA-GADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN 164 (296)
T ss_pred hcCCCcEEEEEecCCHHHHHHHHHHHHHc-CCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC
Confidence 33567899999999999999999988775 78999999999975321100 111111 11 56788887544
Q ss_pred chHHHHHHHHHHHHhcccceEEe-ccCC-----Cccc--eeccccccccc-cChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDV-NLGC-----PIEF--IYKQGSGSGLL-QRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IEL-N~gC-----P~~~--v~~~g~GsaLl-~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
.+++.+.++.+. .+|+|+|.+ |... +... ....++|+..- .......+.++.+++.+++||+.- |.
T Consensus 165 -~~~~~~~a~~~~-~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~---GG 239 (296)
T cd04740 165 -VTDIVEIARAAE-EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGV---GG 239 (296)
T ss_pred -chhHHHHHHHHH-HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEE---CC
Confidence 335666666554 469999987 3211 1000 11112222111 112235677778888778887763 21
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
......+.+.+ .+|+|+|.+-
T Consensus 240 ---I~~~~da~~~l-~~GAd~V~ig 260 (296)
T cd04740 240 ---IASGEDALEFL-MAGASAVQVG 260 (296)
T ss_pred ---CCCHHHHHHHH-HcCCCEEEEc
Confidence 12233444444 5899998764
No 185
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.20 E-value=0.0026 Score=65.19 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=51.3
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.+++.++++++.. +||..-|||+|.+++++++..| +|-|+||..++.||.+++++.
T Consensus 60 ~~n~~~i~~i~~~~--~~v~vGGGIrs~e~~~~~l~~G--a~rvvigT~a~~~p~~l~~~~ 116 (241)
T PRK14114 60 VENLPVLEKLSEFA--EHIQIGGGIRSLDYAEKLRKLG--YRRQIVSSKVLEDPSFLKFLK 116 (241)
T ss_pred cchHHHHHHHHhhc--CcEEEecCCCCHHHHHHHHHCC--CCEEEECchhhCCHHHHHHHH
Confidence 34678888888764 6999999999999999999997 999999999999999999994
No 186
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=97.19 E-value=0.02 Score=57.92 Aligned_cols=185 Identities=17% Similarity=0.186 Sum_probs=108.0
Q ss_pred eecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhh-cCCCEEEEEEccc
Q psy9514 373 VQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGI 449 (611)
Q Consensus 373 vQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~ 449 (611)
.++...+...+.+-.+.+++ .|+|.+ |+-=||= ..+..+-.++++++++. ++.|+-|-+=+.
T Consensus 4 pSil~ad~~~l~~~i~~l~~-~g~~~lH~DvmDG~F-------------vpn~tfg~~~i~~i~~~~~~~~~dvHLMv~- 68 (220)
T PRK08883 4 PSILSADFARLGEDVEKVLA-AGADVVHFDVMDNHY-------------VPNLTFGAPICKALRDYGITAPIDVHLMVK- 68 (220)
T ss_pred hhhhhcCHHHHHHHHHHHHH-cCCCEEEEecccCcc-------------cCccccCHHHHHHHHHhCCCCCEEEEeccC-
Confidence 35566666677777766653 455554 4433442 12222335788899887 578887764331
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCCce
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGASL 519 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~~~ 519 (611)
.-..+++.+.++|++.|++|.-.... +..+-+.+++...+ ...+.+-+. -++.
T Consensus 69 -----~p~~~i~~~~~~gad~i~~H~Ea~~~----------~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~--~~D~ 131 (220)
T PRK08883 69 -----PVDRIIPDFAKAGASMITFHVEASEH----------VDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMD--KVDL 131 (220)
T ss_pred -----CHHHHHHHHHHhCCCEEEEcccCccc----------HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHH--hCCe
Confidence 23478899999999999999864211 11222222322221 111222222 3555
Q ss_pred EEeccc---cccccccCCccHHHHHHHHhhC----CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 520 ITLHGR---TREQRYTKQADWDYIEKCAQLC----SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 520 itihgr---tr~g~~~~~a~~~~i~~~~k~~----~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
|++.+. +.-+.+. +..++.++++.+.. .++||.+-|||+ .+.+.++++.| ||++++|++++..++.-+.
T Consensus 132 vlvMtV~PGfgGq~fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI~-~eni~~l~~aG--Ad~vVvGSaIf~~~d~~~~ 207 (220)
T PRK08883 132 ILLMSVNPGFGGQSFI-PHTLDKLRAVRKMIDESGRDIRLEIDGGVK-VDNIREIAEAG--ADMFVAGSAIFGQPDYKAV 207 (220)
T ss_pred EEEEEecCCCCCceec-HhHHHHHHHHHHHHHhcCCCeeEEEECCCC-HHHHHHHHHcC--CCEEEEeHHHhCCCCHHHH
Confidence 644322 2222221 12344555554332 248999999997 99999999998 9999999998876664443
Q ss_pred H
Q psy9514 593 I 593 (611)
Q Consensus 593 i 593 (611)
+
T Consensus 208 i 208 (220)
T PRK08883 208 I 208 (220)
T ss_pred H
Confidence 3
No 187
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=97.16 E-value=0.0033 Score=62.94 Aligned_cols=153 Identities=18% Similarity=0.341 Sum_probs=84.7
Q ss_pred cccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhH--
Q psy9514 413 QGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY-- 490 (611)
Q Consensus 413 ~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~-- 490 (611)
...|-+-|.+|..+++|+.+| .+||..|.|+|-. .-++.|+..|+|+|.=+--. .||||.+
T Consensus 56 ~aGGVaRMaDp~~i~eim~aV----sIPVMAKvRIGH~-------~EA~iLealgVD~IDESEVL------TPAD~~~Hi 118 (296)
T COG0214 56 AAGGVARMADPKMIEEIMDAV----SIPVMAKVRIGHF-------VEAQILEALGVDMIDESEVL------TPADEEFHI 118 (296)
T ss_pred hccCccccCCHHHHHHHHHhc----ccceeeeeecchh-------HHHHHHHHhCCCcccccccc------CCCchhhhc
Confidence 335778899999998887765 6899999999842 23567888999987533211 2333321
Q ss_pred ----------------------HHHHhhhcccCchh-hhhcchhhH---hcCCceEEecccccccccc----CCccHHHH
Q psy9514 491 ----------------------IEKCAQLCSRDNNI-IHNFMPKFR---DWGASLITLHGRTREQRYT----KQADWDYI 540 (611)
Q Consensus 491 ----------------------i~~~~~~~~~~~~~-~~~~~~~l~---~~G~~~itihgrtr~g~~~----~~a~~~~i 540 (611)
|.+=+..|+..-+. +-+....++ ....+.-.+...+.+..|. -.+-++.+
T Consensus 119 ~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv 198 (296)
T COG0214 119 NKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELV 198 (296)
T ss_pred chhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHH
Confidence 11222222211110 000000000 0000000000000011010 11234555
Q ss_pred HHHHhhCCCCcEE--EecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 541 EKCAQLCSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 541 ~~~~k~~~~iPVI--gnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.++.+. ..+||+ +.|||-||.|+.-+++.| +|+|.+|.|++.
T Consensus 199 ~~~~~~-grLPVvnFAAGGvATPADAALMM~LG--adGVFVGSGIFK 242 (296)
T COG0214 199 KEVAKL-GRLPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFK 242 (296)
T ss_pred HHHHHh-CCCCeEeecccCcCChhHHHHHHHhC--CCeEEecccccC
Confidence 665543 578876 899999999999999998 999999999875
No 188
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.13 E-value=0.0044 Score=64.70 Aligned_cols=153 Identities=16% Similarity=0.116 Sum_probs=92.8
Q ss_pred CCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhcc-CCCc----cccc----c-ccceeeecccC-ch
Q psy9514 312 SEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ-GSGS----GLLQ----R-ANLFGVQLCGN-NP 380 (611)
Q Consensus 312 ~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~-~~~~----~l~~----~-~~~~ivQi~g~-~p 380 (611)
.+.++++||.|..++.+..+++.+.+. +++.|++|++||....-.. .... +++. . +.++.+.+... +.
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~-G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~ 175 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERA-GAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDL 175 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHh-CCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCH
Confidence 468999999999999999999888775 6899999999997431000 0001 1111 1 46778877765 55
Q ss_pred HHHHHHHHHHHHhcccceEEeccCCCccc--------eeccccccccccC--hHHHHHHHHHHHhhc--CCCEEEEEEcc
Q psy9514 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEF--------IYKQGSGSGLLQR--ANILQSVITCMNEVS--SLPITVKTRTG 448 (611)
Q Consensus 381 ~~~~~aA~~l~~~~g~D~IELN~gCP~~~--------v~~~g~GsaLl~r--~~~l~eIv~av~~~~--~~PvtVKiR~g 448 (611)
+++.+.++.+. .+|+|+|.++.+-+... ....++|+ +-.. .....+.++.+++.+ ++||..- |
T Consensus 176 ~~~~~~a~~l~-~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g-~sg~~~~~~~~~~v~~i~~~~~~~ipiia~---G 250 (289)
T cd02810 176 EDIVELAKAAE-RAGADGLTAINTISGRVVDLKTVGPGPKRGTGG-LSGAPIRPLALRWVARLAARLQLDIPIIGV---G 250 (289)
T ss_pred HHHHHHHHHHH-HcCCCEEEEEcccCccceecccCccccCCCCCc-cCcHHHHHHHHHHHHHHHHhcCCCCCEEEE---C
Confidence 67778877775 46999999864321000 01111221 1111 123466788888877 6777653 2
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
.- .....+.+.+ .+|+++|.+.
T Consensus 251 GI---~~~~da~~~l-~~GAd~V~vg 272 (289)
T cd02810 251 GI---DSGEDVLEML-MAGASAVQVA 272 (289)
T ss_pred CC---CCHHHHHHHH-HcCccHheEc
Confidence 11 1223334444 4899988764
No 189
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.13 E-value=0.0026 Score=63.07 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=59.4
Q ss_pred chhhHhcCCceEEeccccccc--cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 509 MPKFRDWGASLITLHGRTREQ--RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 509 ~~~l~~~G~~~itihgrtr~g--~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
+..+.+.|++++++....... .......|..++++.+. .++||++.||| +++++.+++..| +|+|++|+++...
T Consensus 108 a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~-~~ipvia~GGI-~~~~~~~~~~~G--a~gvav~s~i~~~ 183 (201)
T PRK07695 108 AIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARA-LSIPVIAIGGI-TPENTRDVLAAG--VSGIAVMSGIFSS 183 (201)
T ss_pred HHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 445677899999763322211 11233468888888765 47999999999 999999999987 9999999999865
Q ss_pred CchHHHHH
Q psy9514 587 PWIFQEIK 594 (611)
Q Consensus 587 P~lf~ei~ 594 (611)
+.....++
T Consensus 184 ~~p~~~~~ 191 (201)
T PRK07695 184 ANPYSKAK 191 (201)
T ss_pred CCHHHHHH
Confidence 55444443
No 190
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=97.13 E-value=0.022 Score=56.96 Aligned_cols=170 Identities=11% Similarity=0.038 Sum_probs=111.1
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.+++.=+.+.+++++...++.+. ..|++.||+-+.-| ...+.++.+++..+ . +.+-.|
T Consensus 8 ~~liaVlr~~~~e~a~~~~~al~-~~Gi~~iEit~~t~------------------~a~~~i~~l~~~~~-~--~~vGAG 65 (204)
T TIGR01182 8 AKIVPVIRIDDVDDALPLAKALI-EGGLRVLEVTLRTP------------------VALDAIRLLRKEVP-D--ALIGAG 65 (204)
T ss_pred CCEEEEEecCCHHHHHHHHHHHH-HcCCCEEEEeCCCc------------------cHHHHHHHHHHHCC-C--CEEEEE
Confidence 35566677889999999999986 46999999986555 13566777776543 2 333344
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceEEe
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLITL 522 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~iti 522 (611)
.--+ .+-++.+.++|+++| |+.... .++.+.+++.+.. +..-+-...++|++.+-+
T Consensus 66 TVl~----~~~a~~a~~aGA~Fi-vsP~~~-------------~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 66 TVLN----PEQLRQAVDAGAQFI-VSPGLT-------------PELAKHAQDHGIPIIPGVATPSEIMLALELGITALKL 127 (204)
T ss_pred eCCC----HHHHHHHHHcCCCEE-ECCCCC-------------HHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEE
Confidence 3222 244777888999987 433321 1222322222211 122333566789999876
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
..-.. . ..-.|++.+..-++.+|++..||| |++.+.+++..| +.+|.+|..++.+.
T Consensus 128 FPA~~----~--GG~~yikal~~plp~i~~~ptGGV-~~~N~~~~l~aG--a~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 128 FPAEV----S--GGVKMLKALAGPFPQVRFCPTGGI-NLANVRDYLAAP--NVACGGGSWLVPKD 183 (204)
T ss_pred CCchh----c--CCHHHHHHHhccCCCCcEEecCCC-CHHHHHHHHhCC--CEEEEEChhhcCch
Confidence 44111 1 114677777777788999999999 579999999998 99999998777543
No 191
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=97.12 E-value=0.0076 Score=64.07 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=101.0
Q ss_pred ChHHHHHHHHHHHhh-cCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhh-cc
Q psy9514 422 RANILQSVITCMNEV-SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL-CS 499 (611)
Q Consensus 422 r~~~l~eIv~av~~~-~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~-~~ 499 (611)
.++.+.+.++.+++. .+.|+-|-+-. +..+ +...+.++.+.+.++..|.+++....+ +..+.+. ++
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~-~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~----------~~~lk~~Gi~ 105 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILG-FVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQ----------ARALEAIGIS 105 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEec-cCCC-cchHHHHHHHHhcCCcEEEEcCCChHH----------HHHHHHCCCE
Confidence 578899999999986 58999988743 2221 223456777788999999988764321 1222111 11
Q ss_pred cCc-hhhhhcchhhHhcCCceEEeccccccccccC----CccHHHHHHHHh------hCCCCcEEEecCCCCHHHHHHHH
Q psy9514 500 RDN-NIIHNFMPKFRDWGASLITLHGRTREQRYTK----QADWDYIEKCAQ------LCSPAPLYGNGDILSYEDYTESL 568 (611)
Q Consensus 500 ~~~-~~~~~~~~~l~~~G~~~itihgrtr~g~~~~----~a~~~~i~~~~k------~~~~iPVIgnGgI~s~eda~~~l 568 (611)
-.. -.....+..+.+.|+|.|.+-|...-|- .+ ..-|..+...+. ...++|||+.|||.+...+..++
T Consensus 106 v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH-~G~~~t~~L~~~v~~~l~~~~~~~~~~~iPViAAGGI~dgr~~aaal 184 (320)
T cd04743 106 TYLHVPSPGLLKQFLENGARKFIFEGRECGGH-VGPRSSFVLWESAIDALLAANGPDKAGKIHLLFAGGIHDERSAAMVS 184 (320)
T ss_pred EEEEeCCHHHHHHHHHcCCCEEEEecCcCcCC-CCCCCchhhHHHHHHHHHHhhcccccCCccEEEEcCCCCHHHHHHHH
Confidence 110 1123456788899999999988766442 22 112333322221 11379999999999999999998
Q ss_pred HcCCCc--------cEEEEcHHhhhCCch
Q psy9514 569 KKSPSI--------SGVMIGRGALIKPWI 589 (611)
Q Consensus 569 ~~G~~a--------D~VmIGRgaL~dP~l 589 (611)
..| + ++|.||+.+|.=++-
T Consensus 185 aLG--A~~~~~Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 185 ALA--APLAERGAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred HcC--CcccccccccEEEEccHHhcchhh
Confidence 887 5 899999999986654
No 192
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.0043 Score=62.31 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=55.5
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.+..+++.|+.-|.++--.++|. ....|.+.++.+... ++||||++||.-++++..+.+..| ++|++..+
T Consensus 159 ~Wa~~~e~~GAGEIlLtsmD~DGt-k~GyDl~l~~~v~~~-v~iPvIASGGaG~~ehf~eaf~~~-~adAaLAA 229 (256)
T COG0107 159 EWAKEVEELGAGEILLTSMDRDGT-KAGYDLELTRAVREA-VNIPVIASGGAGKPEHFVEAFTEG-KADAALAA 229 (256)
T ss_pred HHHHHHHHcCCceEEEeeeccccc-ccCcCHHHHHHHHHh-CCCCEEecCCCCcHHHHHHHHHhc-CccHHHhh
Confidence 345667777777777766666664 344688888887654 699999999999999999999998 89988765
No 193
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.09 E-value=0.018 Score=57.45 Aligned_cols=179 Identities=15% Similarity=0.186 Sum_probs=109.0
Q ss_pred hhccceeeeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEe-ccCCCccceecccc
Q psy9514 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV-NLGCPIEFIYKQGS 415 (611)
Q Consensus 337 ~~~~v~~idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IEL-N~gCP~~~v~~~g~ 415 (611)
+.++.+|+|+.+.-.... +...-..+.+=+.+-+|+.|..+.+. |.|.||| |+-|= |.+|
T Consensus 37 ~~ggAt~vDIAadp~LV~---------~~~~~s~lPICVSaVep~~f~~aV~A-----GAdliEIGNfDsF----Y~qG- 97 (242)
T PF04481_consen 37 EIGGATFVDIAADPELVK---------LAKSLSNLPICVSAVEPELFVAAVKA-----GADLIEIGNFDSF----YAQG- 97 (242)
T ss_pred HccCCceEEecCCHHHHH---------HHHHhCCCCeEeecCCHHHHHHHHHh-----CCCEEEecchHHH----HhcC-
Confidence 357889999864322111 11222344555566789999988654 8999999 65552 1222
Q ss_pred ccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHH
Q psy9514 416 GSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494 (611)
Q Consensus 416 GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~ 494 (611)
..-..+.+.++.+..|+.+ ++|++|-+---. ..+.=.+++..|++.|+|.|..-|.+.... +.+-...
T Consensus 98 ---r~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL--~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p-~~~g~lg----- 166 (242)
T PF04481_consen 98 ---RRFSAEEVLALTRETRSLLPDITLSVTVPHIL--PLDQQVQLAEDLVKAGADIIQTEGGTSSKP-TSPGILG----- 166 (242)
T ss_pred ---CeecHHHHHHHHHHHHHhCCCCceEEecCccc--cHHHHHHHHHHHHHhCCcEEEcCCCCCCCC-CCcchHH-----
Confidence 1224566778888888877 578887643221 234556899999999999999888764322 0000000
Q ss_pred hhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 495 AQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 495 ~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
.....+|+ +...+.+.+ .+++||+..-|+.+ -.+--.+..| +
T Consensus 167 ---------lIekaapT-------------------------LAaay~ISr-~v~iPVlcASGlS~-vT~PmAiaaG--A 208 (242)
T PF04481_consen 167 ---------LIEKAAPT-------------------------LAAAYAISR-AVSIPVLCASGLSA-VTAPMAIAAG--A 208 (242)
T ss_pred ---------HHHHHhHH-------------------------HHHHHHHHh-ccCCceEeccCcch-hhHHHHHHcC--C
Confidence 00111122 223334434 46899999888854 4455566777 9
Q ss_pred cEEEEcHHh
Q psy9514 575 SGVMIGRGA 583 (611)
Q Consensus 575 D~VmIGRga 583 (611)
.||-||.+.
T Consensus 209 sGVGVGSav 217 (242)
T PF04481_consen 209 SGVGVGSAV 217 (242)
T ss_pred cccchhHHh
Confidence 999999764
No 194
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=97.06 E-value=0.018 Score=56.54 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=57.1
Q ss_pred hhHhcCCceEEeccc----cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 511 KFRDWGASLITLHGR----TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 511 ~l~~~G~~~itihgr----tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
...+.|++.+.+... ++.+ +.....++.+.++.+...++||++-||| +++++.+++..| +|+|++|++++..
T Consensus 111 ~a~~~g~dyi~~~~v~~t~~k~~-~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G--~~gva~~~~i~~~ 186 (196)
T TIGR00693 111 EAEAEGADYIGFGPIFPTPTKKD-PAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAG--ADGVAVVSAIMQA 186 (196)
T ss_pred HHhHcCCCEEEECCccCCCCCCC-CCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcC--CCEEEEhHHhhCC
Confidence 455679999875322 2221 2233468888888766556999999999 599999999887 9999999999866
Q ss_pred CchHHH
Q psy9514 587 PWIFQE 592 (611)
Q Consensus 587 P~lf~e 592 (611)
++....
T Consensus 187 ~dp~~~ 192 (196)
T TIGR00693 187 ADPKAA 192 (196)
T ss_pred CCHHHH
Confidence 554443
No 195
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=97.02 E-value=0.0049 Score=63.22 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=52.6
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+.+.+.++++++.. .+||-..|||+|.++++.++..| +|-|+||..++.+|++++++.+
T Consensus 60 ~~n~~~i~~i~~~~-~~~v~vgGGIrs~e~~~~~l~~G--a~~vvigT~a~~~p~~~~~~~~ 118 (243)
T TIGR01919 60 GNNEMMLEEVVKLL-VVVEELSGGRRDDSSLRAALTGG--RARVNGGTAALENPWWAAAVIR 118 (243)
T ss_pred cchHHHHHHHHHHC-CCCEEEcCCCCCHHHHHHHHHcC--CCEEEECchhhCCHHHHHHHHH
Confidence 34677888888764 69999999999999999999997 9999999999999999999865
No 196
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.00 E-value=0.018 Score=59.41 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCC--CHHHHHHH----HHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDIL--SYEDYTES----LKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~--s~eda~~~----l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.+.++++.+. .++||++.|||. |.+++.+. ++.| +++|.+||.++..++...-++
T Consensus 180 ~~~~l~~~~~~-~~iPVva~GGi~~~~~~~~~~~i~~~~~aG--a~Gia~g~~i~~~~dp~~~~~ 241 (258)
T TIGR01949 180 DIDSFRDVVKG-CPAPVVVAGGPKTNSDREFLQMIKDAMEAG--AAGVAVGRNIFQHDDPVGITK 241 (258)
T ss_pred CHHHHHHHHHh-CCCcEEEecCCCCCCHHHHHHHHHHHHHcC--CcEEehhhHhhcCCCHHHHHH
Confidence 45666776654 479999999999 66655544 4777 999999999999887544443
No 197
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.99 E-value=0.01 Score=65.52 Aligned_cols=211 Identities=18% Similarity=0.141 Sum_probs=120.1
Q ss_pred cccccCeeecCcEEecc--CCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCC-h------------------------
Q psy9514 249 NSEKKKIDWQGKLYLSP--LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS-P------------------------ 301 (611)
Q Consensus 249 p~ei~~l~l~nrivlAP--Mt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~-~------------------------ 301 (611)
+.++.+|+|+|++++|. ++. ++--.+++. +.|++.+++..+. .....-. +
T Consensus 5 ~~~~~Gl~l~nPv~~aag~~~~-~~~~~~~~~-~~g~Gavv~kti~-~~~gn~~~pr~~~~~~~~~~~~g~~n~~~~s~~ 81 (420)
T PRK08318 5 SITFCGIKSPNPFWLASAPPTN-KYYNVARAF-EAGWGGVVWKTLG-PPIVNVSSPRFGALVKEDRRFIGFNNIELITDR 81 (420)
T ss_pred eEEECCEecCCCcEeCCcCCCC-CHHHHHHHH-HhCCCEEEEeecC-CCCCCCCCCeEEEecCCCcccccccCccccccc
Confidence 45678999999999984 443 222334544 4699988887665 2111100 0
Q ss_pred --hhhH----hHhhccCCCeEEEEecCC-ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccc--------
Q psy9514 302 --QEWA----LIKRHESEDLFGVQLCGN-NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ-------- 366 (611)
Q Consensus 302 --~e~~----l~~~h~~e~~~~vQi~g~-~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~-------- 366 (611)
..|. .+..+..+.++++||+|. .++.+..+++.+.+. ++++|+||++||... -..+.+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~-g~d~ielN~scP~~~-~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEET-GADGIELNFGCPHGM-SERGMGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCCc-cccCCcccccCCHHHHHHH
Confidence 1111 111122246789999998 899999999888764 589999999999721 11122222111
Q ss_pred -------cccceeeecccCchHHHHHHHHHHHHhcccceEEe-ccC-------------CCcc--ceeccccccccccCh
Q psy9514 367 -------RANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDV-NLG-------------CPIE--FIYKQGSGSGLLQRA 423 (611)
Q Consensus 367 -------~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IEL-N~g-------------CP~~--~v~~~g~GsaLl~r~ 423 (611)
...|+.+-+.-+.. .+...|+.+. ..|+|+|=+ |-- -|.- .....|+.+.- ..
T Consensus 160 ~~~v~~~~~~Pv~vKl~p~~~-~~~~~a~~~~-~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a--~~ 235 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLTPNIT-DIREPARAAK-RGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPA--VK 235 (420)
T ss_pred HHHHHhccCCcEEEEcCCCcc-cHHHHHHHHH-HCCCCEEEEecccCccccccccccCCCceecCCCCcccccchh--hh
Confidence 14788888875533 3556666554 458888763 321 1210 01112222211 12
Q ss_pred HHHHHHHHHHHhhc---CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 424 NILQSVITCMNEVS---SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 424 ~~l~eIv~av~~~~---~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
.+..++|..+++.+ ++||+. .|. ...+...++.+. +|+++|.|--
T Consensus 236 p~~l~~v~~~~~~~~~~~ipIig---~GG---I~s~~da~e~i~-aGA~~Vqi~t 283 (420)
T PRK08318 236 PIALNMVAEIARDPETRGLPISG---IGG---IETWRDAAEFIL-LGAGTVQVCT 283 (420)
T ss_pred HHHHHHHHHHHhccccCCCCEEe---ecC---cCCHHHHHHHHH-hCCChheeee
Confidence 23567777777766 567765 332 223344555554 9999988743
No 198
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.99 E-value=0.0061 Score=62.10 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=50.7
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.+.+.++++++... .||-.-|||+|.+++++++..| +|-|+||..++.+|.+++++.+.
T Consensus 60 ~n~~~i~~i~~~~~-~~v~vGGGIrs~e~~~~~l~~G--a~kvvigt~a~~~p~~~~~~~~~ 118 (232)
T PRK13586 60 NNEMYIKEISKIGF-DWIQVGGGIRDIEKAKRLLSLD--VNALVFSTIVFTNFNLFHDIVRE 118 (232)
T ss_pred chHHHHHHHHhhCC-CCEEEeCCcCCHHHHHHHHHCC--CCEEEECchhhCCHHHHHHHHHH
Confidence 35677888877432 4999999999999999999997 99999999999999999997643
No 199
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=96.98 E-value=0.0048 Score=62.21 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+.+.++++.+...++||+..|||+|++++++++..| ||.|++|..++.+|.++.++.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGsai~~~p~~~~~~v 218 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAG--ADTIVVGNIVEEDPNAALETV 218 (219)
T ss_pred CCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhCCHHHHHHHh
Confidence 4567778776643379999999999999999999987 999999999999999998864
No 200
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=96.97 E-value=0.14 Score=54.38 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=43.5
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
+.++|..++.. .++|||.-+||.+++|+.++++.| +|+|.+..|...-++..
T Consensus 237 ~p~~i~~~~e~-~~vpVivdAGIg~~sda~~AmelG--adgVL~nSaIa~a~dPv 288 (326)
T PRK11840 237 NPYTIRLIVEG-ATVPVLVDAGVGTASDAAVAMELG--CDGVLMNTAIAEAKNPV 288 (326)
T ss_pred CHHHHHHHHHc-CCCcEEEeCCCCCHHHHHHHHHcC--CCEEEEcceeccCCCHH
Confidence 55677776665 579999999999999999999998 99999999987655443
No 201
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.11 Score=52.48 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=84.4
Q ss_pred chHHHHHHHHHHHHhcccceEEec-cCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN-LGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN-~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~ 457 (611)
+++++...|+.+.+..+-+.|-|- .+++. .|+-|+- +.+++....++--|.|---++ ++ .
T Consensus 81 taeEAv~tArlARE~~~t~wiKlEVi~d~~----------tLlPD~~---etl~Aae~Lv~eGF~VlPY~~--dD----~ 141 (262)
T COG2022 81 TAEEAVRTARLAREALGTNWIKLEVIGDEK----------TLLPDPI---ETLKAAEQLVKEGFVVLPYTT--DD----P 141 (262)
T ss_pred CHHHHHHHHHHHHHHccCCeEEEEEecCCc----------ccCCChH---HHHHHHHHHHhCCCEEeeccC--CC----H
Confidence 567888888888776677777654 23321 2333332 333444433433444432221 11 2
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 537 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~ 537 (611)
-++++|++.||.+|.=-+-. .|.-.+..+-
T Consensus 142 v~arrLee~GcaavMPl~aP--------------------------------------------------IGSg~G~~n~ 171 (262)
T COG2022 142 VLARRLEEAGCAAVMPLGAP--------------------------------------------------IGSGLGLQNP 171 (262)
T ss_pred HHHHHHHhcCceEecccccc--------------------------------------------------ccCCcCcCCH
Confidence 57888999998876422211 0112344455
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..+.-++..+ ++|||.--||-++.|+...++.| +|+|++-.+.-.
T Consensus 172 ~~l~iiie~a-~VPviVDAGiG~pSdAa~aMElG--~DaVL~NTAiA~ 216 (262)
T COG2022 172 YNLEIIIEEA-DVPVIVDAGIGTPSDAAQAMELG--ADAVLLNTAIAR 216 (262)
T ss_pred HHHHHHHHhC-CCCEEEeCCCCChhHHHHHHhcc--cceeehhhHhhc
Confidence 5666666665 99999999999999999999998 999999877643
No 202
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=96.96 E-value=0.0012 Score=71.32 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=78.0
Q ss_pred ccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcc
Q psy9514 420 LQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499 (611)
Q Consensus 420 l~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~ 499 (611)
+..|....+.+.+|++.+..|+.+| |... ..=+..+...|+++|.++..-.-| .||
T Consensus 200 ~~~P~i~ked~~~i~~~~~~~lv~k---GV~~-----~~D~~~a~~tg~~~I~vsnhggrq-----lD~----------- 255 (360)
T COG1304 200 LSVPVISKEDGAGISKEWAGPLVLK---GILA-----PEDAAGAGGTGADGIEVSNHGGRQ-----LDW----------- 255 (360)
T ss_pred cCCCcccHHHHhHHHHhcCCcHHHh---CCCC-----HHHHHhhccCCceEEEEEcCCCcc-----ccC-----------
Confidence 4677788888888888888888776 3221 122456678889999887643222 133
Q ss_pred cCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEE
Q psy9514 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVM 578 (611)
Q Consensus 500 ~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~Vm 578 (611)
+.+..+.+.++..... .++||+.|||+|..|+.+++..| ||+|+
T Consensus 256 ---------------------------------g~st~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALG--A~~v~ 300 (360)
T COG1304 256 ---------------------------------GISTADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALG--ADAVG 300 (360)
T ss_pred ---------------------------------CCChHHHHHHHHHHhCCCeEEEecCCCCCHHHHHHHHHhC--Cchhh
Confidence 3344566666666655 39999999999999999999998 99999
Q ss_pred EcHHhhh
Q psy9514 579 IGRGALI 585 (611)
Q Consensus 579 IGRgaL~ 585 (611)
|||..|.
T Consensus 301 igrp~L~ 307 (360)
T COG1304 301 IGRPFLY 307 (360)
T ss_pred hhHHHHH
Confidence 9998775
No 203
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=96.91 E-value=0.017 Score=58.07 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=78.9
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
.|+|.||+-+- +|..+..+.+.+.+-++++++.+ +.|+.|-+=.+.-. .+.....++...++|+|+|-
T Consensus 82 ~GAdEiDvv~n----------~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~-~~ei~~a~~ia~eaGADfvK 150 (211)
T TIGR00126 82 YGADEVDMVIN----------IGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLT-DEEIRKACEICIDAGADFVK 150 (211)
T ss_pred cCCCEEEeecc----------hHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCC-HHHHHHHHHHHHHhCCCEEE
Confidence 49999998431 34444567778888888888877 56666654444322 24556778888999999987
Q ss_pred EEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcE
Q psy9514 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552 (611)
Q Consensus 473 vhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPV 552 (611)
.+-+.... -....+...+.+.++ ..++|
T Consensus 151 TsTGf~~~--------------------------------------------------gat~~dv~~m~~~v~--~~v~I 178 (211)
T TIGR00126 151 TSTGFGAG--------------------------------------------------GATVEDVRLMRNTVG--DTIGV 178 (211)
T ss_pred eCCCCCCC--------------------------------------------------CCCHHHHHHHHHHhc--cCCeE
Confidence 64322100 011123334444443 26899
Q ss_pred EEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 553 YGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 553 IgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
-+.|||.|++++.++++.| ++-+-.
T Consensus 179 KaaGGirt~~~a~~~i~aG--a~riGt 203 (211)
T TIGR00126 179 KASGGVRTAEDAIAMIEAG--ASRIGA 203 (211)
T ss_pred EEeCCCCCHHHHHHHHHHh--hHHhCc
Confidence 9999999999999999987 664433
No 204
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=96.91 E-value=0.0023 Score=64.66 Aligned_cols=62 Identities=15% Similarity=0.063 Sum_probs=53.4
Q ss_pred ccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+..+.+.+.++++.+...++||+..|||+|.+++++++..| +|.|++|..++.||.++.++-
T Consensus 161 ~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVGs~~~~dp~~~~~~v 222 (223)
T TIGR01768 161 APEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAG--ADTIVTGNVIEEDVDKALETI 222 (223)
T ss_pred CCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcC--CCEEEECcHHhhCHHHHHHhh
Confidence 44455688888887765489999999999999999999987 999999999999999888763
No 205
>KOG0538|consensus
Probab=96.86 E-value=0.0057 Score=63.67 Aligned_cols=99 Identities=20% Similarity=0.251 Sum_probs=73.6
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccc-cccccccCcChhHHHHHhhhcccCchhh
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT-REQRYTKQADWDYIEKCAQLCSRDNNII 505 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~-r~qr~~~~adw~~i~~~~~~~~~~~~~~ 505 (611)
=+=++.++.....||.||=-+- .+ -++...+.|++.|.|++-- |++.
T Consensus 212 W~Di~wLr~~T~LPIvvKGilt----~e----DA~~Ave~G~~GIIVSNHGgRQlD------------------------ 259 (363)
T KOG0538|consen 212 WKDIKWLRSITKLPIVVKGVLT----GE----DARKAVEAGVAGIIVSNHGGRQLD------------------------ 259 (363)
T ss_pred hhhhHHHHhcCcCCeEEEeecc----cH----HHHHHHHhCCceEEEeCCCccccC------------------------
Confidence 3445667777889999993321 12 2556778999999997643 3322
Q ss_pred hhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 506 HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 506 ~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
..++..+.+.++++.. .++||+.-|||++-.|+.++|..| +.+|.|||..+
T Consensus 260 --------------------------~vpAtI~~L~Evv~aV~~ri~V~lDGGVR~G~DVlKALALG--Ak~VfiGRP~v 311 (363)
T KOG0538|consen 260 --------------------------YVPATIEALPEVVKAVEGRIPVFLDGGVRRGTDVLKALALG--AKGVFIGRPIV 311 (363)
T ss_pred --------------------------cccchHHHHHHHHHHhcCceEEEEecCcccchHHHHHHhcc--cceEEecCchh
Confidence 2345667777776654 369999999999999999999998 99999999877
Q ss_pred h
Q psy9514 585 I 585 (611)
Q Consensus 585 ~ 585 (611)
+
T Consensus 312 ~ 312 (363)
T KOG0538|consen 312 W 312 (363)
T ss_pred e
Confidence 5
No 206
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=96.85 E-value=0.0053 Score=63.39 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=50.1
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC----CchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK----PWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d----P~lf~ei~~g 596 (611)
.+++.+.++++ .++||-..|||++ ++++++++.| ||-|+||..|+.| |.+++++.+.
T Consensus 71 ~n~~~i~~i~~--~~~~vqvGGGIR~-e~i~~~l~~G--a~rViigT~Av~~~~~~p~~v~~~~~~ 131 (262)
T PLN02446 71 SLAAALEALRA--YPGGLQVGGGVNS-ENAMSYLDAG--ASHVIVTSYVFRDGQIDLERLKDLVRL 131 (262)
T ss_pred ccHHHHHHHHh--CCCCEEEeCCccH-HHHHHHHHcC--CCEEEEchHHHhCCCCCHHHHHHHHHH
Confidence 35677888777 4699999999996 9999999998 9999999999999 9999998663
No 207
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.84 E-value=0.012 Score=60.97 Aligned_cols=185 Identities=14% Similarity=0.179 Sum_probs=103.0
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc------ccccccc--ChHHHHHHHHHHH-hhcCCCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG------SGSGLLQ--RANILQSVITCMN-EVSSLPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g------~GsaLl~--r~~~l~eIv~av~-~~~~~PvtVKiR~ 447 (611)
+.+...+++..+. ..|+|.|||- ++=| .-+| .=-+|.+ +.+.+.++++.++ ....+|+.+-.=
T Consensus 22 ~~~~~~~~~~~l~-~~GaD~iEiGiPfSDP----~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y- 95 (259)
T PF00290_consen 22 DLETTLEILKALE-EAGADIIEIGIPFSDP----VADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTY- 95 (259)
T ss_dssp SHHHHHHHHHHHH-HTTBSSEEEE--SSSC----TTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE--
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCCCCC----CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEee-
Confidence 4467777777775 4699999984 3334 2233 1112222 4667788889998 666889877422
Q ss_pred cccCCc--hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhcC
Q psy9514 448 GIHKDN--NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDWG 516 (611)
Q Consensus 448 g~~~~~--~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~G 516 (611)
.... .-..++++.+.++|++.|.|-.=..+. ..++...+.+..... .+-+..+.+..
T Consensus 96 --~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee----------~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a 163 (259)
T PF00290_consen 96 --YNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEE----------SEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQA 163 (259)
T ss_dssp --HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGG----------HHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-
T ss_pred --ccHHhccchHHHHHHHHHcCCCEEEEcCCChHH----------HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhC
Confidence 1100 113468888999999998875533221 122323222222111 11122233333
Q ss_pred CceE---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 517 ASLI---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 517 ~~~i---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-..| ...|.|....-....-.++++.+ ++..++||+..=||+|++++.++. .+ +|||+||.+++.
T Consensus 164 ~gFiY~vs~~GvTG~~~~~~~~l~~~i~~i-k~~~~~Pv~vGFGI~~~e~~~~~~-~~--aDGvIVGSa~v~ 231 (259)
T PF00290_consen 164 SGFIYLVSRMGVTGSRTELPDELKEFIKRI-KKHTDLPVAVGFGISTPEQAKKLA-AG--ADGVIVGSAFVK 231 (259)
T ss_dssp SSEEEEESSSSSSSTTSSCHHHHHHHHHHH-HHTTSS-EEEESSS-SHHHHHHHH-TT--SSEEEESHHHHH
T ss_pred CcEEEeeccCCCCCCcccchHHHHHHHHHH-HhhcCcceEEecCCCCHHHHHHHH-cc--CCEEEECHHHHH
Confidence 3333 22444443221111123455555 445599999888999999999998 55 999999988764
No 208
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=96.80 E-value=0.0012 Score=70.33 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=81.6
Q ss_pred cChHHHHHHHHHHHhh--------cCCCEEEEEEcc----ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcCh
Q psy9514 421 QRANILQSVITCMNEV--------SSLPITVKTRTG----IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488 (611)
Q Consensus 421 ~r~~~l~eIv~av~~~--------~~~PvtVKiR~g----~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw 488 (611)
.+|+.+.+..+.+... +|+|..-..+-| ...+.+.+.++++.+.+.---.|+|.-|..... +
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~ 137 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------L 137 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------c
Confidence 4666666666655432 256655222221 223445677888887764223588888763211 0
Q ss_pred hHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccc-cccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHH
Q psy9514 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR-EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTES 567 (611)
Q Consensus 489 ~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr-~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~ 567 (611)
+ ......++++.+.++|++.||+||||+ .++|.+.++. .++ -..|+.+.++
T Consensus 138 ~-----------~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~-----------~~~------~~~~~~i~~v 189 (318)
T TIGR00742 138 D-----------SYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENR-----------EIP------PLRYERVYQL 189 (318)
T ss_pred c-----------hHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccc-----------cCC------chhHHHHHHH
Confidence 0 113345678889999999999999998 5566654321 111 1246666565
Q ss_pred HHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 568 LKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 568 l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+.. .+.-.||-|=+.++.-+.+..+
T Consensus 190 k~~~--~~ipVi~NGdI~s~~da~~~l~ 215 (318)
T TIGR00742 190 KKDF--PHLTIEINGGIKNSEQIKQHLS 215 (318)
T ss_pred HHhC--CCCcEEEECCcCCHHHHHHHHh
Confidence 5543 2455667777788776666654
No 209
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0088 Score=60.78 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=53.9
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHccc
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g~ 597 (611)
+-+.+.++++++.. ++||=..|||+|.++++.+++.| ++-|.+|..++.||.++.++.+.-
T Consensus 61 ~~n~~~i~~i~~~~-~~~vQvGGGIRs~~~v~~ll~~G--~~rViiGt~av~~p~~v~~~~~~~ 121 (241)
T COG0106 61 PRNLEAIKEILEAT-DVPVQVGGGIRSLEDVEALLDAG--VARVIIGTAAVKNPDLVKELCEEY 121 (241)
T ss_pred cccHHHHHHHHHhC-CCCEEeeCCcCCHHHHHHHHHCC--CCEEEEecceecCHHHHHHHHHHc
Confidence 34568888888764 89999999999999999999987 999999999999999999987643
No 210
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=96.80 E-value=0.032 Score=65.20 Aligned_cols=166 Identities=11% Similarity=0.053 Sum_probs=102.9
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
.|+++|=+. .-..-+|+++ +-++.+++.+++||..| |-.-+-.+ +.....+|+|+|-+
T Consensus 82 ~GA~aiSVl-------Te~~~F~Gs~--------~~l~~vr~~v~~PvLrK------DFIid~~Q-I~ea~~~GADavLL 139 (695)
T PRK13802 82 GGASAISVL-------TEGRRFLGSL--------DDFDKVRAAVHIPVLRK------DFIVTDYQ-IWEARAHGADLVLL 139 (695)
T ss_pred cCCcEEEEe-------cCcCcCCCCH--------HHHHHHHHhCCCCEEec------cccCCHHH-HHHHHHcCCCEeeh
Confidence 477777664 2233456653 55667777788998777 21111111 23345789999988
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhC
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC 547 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~ 547 (611)
..+.-.+. .+.++.+...+.... ...-+....++|++.|-|.-|.-. +-..+.....++++..
T Consensus 140 I~~~L~~~--------~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~---tf~vd~~~t~~L~~~i 208 (695)
T PRK13802 140 IVAALDDA--------QLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLK---DLKVDVNKYNELAADL 208 (695)
T ss_pred hHhhcCHH--------HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCc---cceeCHHHHHHHHhhC
Confidence 88754321 123333332222221 112233455678887766555443 2234555555665554
Q ss_pred C-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 548 S-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 548 ~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+ ++.+|+.+||.|++|+..+...| +|+|.||.+++..|+.-..++
T Consensus 209 p~~~~~VsESGI~~~~d~~~l~~~G--~davLIGeslm~~~dp~~~~~ 254 (695)
T PRK13802 209 PDDVIKVAESGVFGAVEVEDYARAG--ADAVLVGEGVATADDHELAVE 254 (695)
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHCC--CCEEEECHHhhCCCCHHHHHH
Confidence 3 46789999999999999999987 999999999999998655544
No 211
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.78 E-value=0.00086 Score=69.12 Aligned_cols=60 Identities=22% Similarity=0.328 Sum_probs=47.8
Q ss_pred cccCCcccccCCCCCCCCCCCCCCCcCChhHHhh--cCC--CCCCCCCcceeccccCCCCCccccCc
Q psy9514 73 EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK--SKP--EDISEQCYVFLQHGYCPMGIACRFGS 135 (611)
Q Consensus 73 ~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~--~k~--~d~~~~C~~~~~~G~C~~G~~Crf~~ 135 (611)
..+.|..+... +.|+||-+|.|.|.=.+-.+ .++ ..+.+.|..+..+|+||+|..|+|..
T Consensus 273 rTePcinwe~s---Gyc~yg~Rc~F~hgd~~~ie~~~~~~~~y~~~~crt~~~~g~~p~g~~~c~~~ 336 (351)
T COG5063 273 RTEPCINWEKS---GYCPYGLRCCFKHGDDSDIEMYEEASLGYLDGPCRTRAKGGAFPSGGAVCKSF 336 (351)
T ss_pred ccCCccchhhc---ccCccccccccccCChhhccccccccccccccccccccccCccCCCCchhhcc
Confidence 35778888776 68999999999995444333 333 55678999999999999999999974
No 212
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=96.77 E-value=0.0083 Score=61.81 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=75.9
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHHHHHHHHHHHcCCCEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~I 471 (611)
.|+|.||+ +.+ +|..+..+.+.+.+-+++|++.++ .|+-|-+=++.-.+.+...+.++.+.++|+|+|
T Consensus 95 ~GAdEiD~--------Vin--ig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 95 YGADEVDV--------VFP--YRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred cCCCEEee--------ecc--HHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHHHHHHHHHHHHHhCCCEE
Confidence 48999987 322 345566688889999999998765 455554554533333345678888899999998
Q ss_pred EEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhh---CC
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL---CS 548 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~---~~ 548 (611)
-.+-+.... -..+.+...+.+.++. ..
T Consensus 165 KTSTGf~~~--------------------------------------------------gAt~edv~lm~~~i~~~~~~~ 194 (257)
T PRK05283 165 KTSTGKVPV--------------------------------------------------NATLEAARIMLEVIRDMGVAK 194 (257)
T ss_pred EcCCCCCCC--------------------------------------------------CCCHHHHHHHHHHHHhcccCC
Confidence 654332100 0111123333333332 13
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKS 571 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G 571 (611)
.+-|=+.|||.|++++.+++..|
T Consensus 195 ~vgIKAsGGIrt~~~A~~~i~ag 217 (257)
T PRK05283 195 TVGFKPAGGVRTAEDAAQYLALA 217 (257)
T ss_pred CeeEEccCCCCCHHHHHHHHHHH
Confidence 57788999999999999999976
No 213
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.76 E-value=0.00054 Score=72.64 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=59.1
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccccc
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQR 530 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~ 530 (611)
.+.+.+.++++.+.++---.|++.-|.... ...+.+.++++.+.++|++.||+|+||+
T Consensus 105 ~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~-------------------~~~~~~~~~~~~l~~~G~~~i~vH~Rt~--- 162 (309)
T PF01207_consen 105 KDPDLLAEIVKAVRKAVPIPVSVKIRLGWD-------------------DSPEETIEFARILEDAGVSAITVHGRTR--- 162 (309)
T ss_dssp C-HHHHHHHHHHHHHH-SSEEEEEEESECT---------------------CHHHHHHHHHHHHTT--EEEEECS-T---
T ss_pred cChHHhhHHHHhhhcccccceEEecccccc-------------------cchhHHHHHHHHhhhcccceEEEecCch---
Confidence 355678888888887655688999988542 1245567889999999999999999954
Q ss_pred ccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
- +.. . | --+|+.+.++.+. +..-+||=|=+..+.-+.++.
T Consensus 163 ~-------------q~~-~------~-~a~w~~i~~i~~~---~~ipvi~NGdI~s~~d~~~~~ 202 (309)
T PF01207_consen 163 K-------------QRY-K------G-PADWEAIAEIKEA---LPIPVIANGDIFSPEDAERML 202 (309)
T ss_dssp T-------------CCC-T------S----HHHHHHCHHC----TSEEEEESS--SHHHHHHHC
T ss_pred h-------------hcC-C------c-ccchHHHHHHhhc---ccceeEEcCccCCHHHHHHHH
Confidence 1 111 1 1 2367777777665 345666666666665555543
No 214
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.73 E-value=0.07 Score=53.67 Aligned_cols=174 Identities=12% Similarity=0.034 Sum_probs=108.6
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.+++.=+.+.+++++...++.+. ..|++.|||-+.-| ...+.++.+++..+ .+.+-.|
T Consensus 15 ~~~iaV~r~~~~~~a~~i~~al~-~~Gi~~iEitl~~~------------------~~~~~I~~l~~~~p---~~~IGAG 72 (212)
T PRK05718 15 GPVVPVIVINKLEDAVPLAKALV-AGGLPVLEVTLRTP------------------AALEAIRLIAKEVP---EALIGAG 72 (212)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH-HcCCCEEEEecCCc------------------cHHHHHHHHHHHCC---CCEEEEe
Confidence 34555677889999999999986 35899999975444 13566777776543 1233333
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch--hhhhcchhhHhcCCceEEecccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN--IIHNFMPKFRDWGASLITLHGRT 526 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~--~~~~~~~~l~~~G~~~itihgrt 526 (611)
.--+ .+-++...++|+++++.-+-.. +-|..|.+.---.-. .+..-+....++|++.+-++.-.
T Consensus 73 TVl~----~~~a~~a~~aGA~FivsP~~~~----------~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 73 TVLN----PEQLAQAIEAGAQFIVSPGLTP----------PLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFPAE 138 (212)
T ss_pred eccC----HHHHHHHHHcCCCEEECCCCCH----------HHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEccch
Confidence 2222 2557888999999987655432 122222221000000 01112445778999999874311
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
.. ....|++.+..-++.++++..||| +++++.+++..| +.+.+|.+.|.++.
T Consensus 139 ----~~--gg~~~lk~l~~p~p~~~~~ptGGV-~~~ni~~~l~ag---~v~~vggs~L~~~~ 190 (212)
T PRK05718 139 ----AS--GGVKMLKALAGPFPDVRFCPTGGI-SPANYRDYLALP---NVLCIGGSWMVPKD 190 (212)
T ss_pred ----hc--cCHHHHHHHhccCCCCeEEEeCCC-CHHHHHHHHhCC---CEEEEEChHhCCcc
Confidence 01 135777777766778999999999 579999999986 34555566666544
No 215
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.73 E-value=0.011 Score=60.23 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCC
Q psy9514 455 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ 534 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~ 534 (611)
+..++++.+.+.|++.++|-.-... ....
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~---------------------------------------------------~~~~ 64 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI---------------------------------------------------MGRG 64 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc---------------------------------------------------cCCC
Confidence 4568899999999999887543211 1233
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
.+...+.++.+.. .+||..-|||+|.+|+++++..| |+-|+||..++.+ .+++++.+.
T Consensus 65 ~n~~~i~~i~~~~-~~~v~vgGGir~~edv~~~l~~G--a~~viigt~~~~~-~~~~~~~~~ 122 (233)
T cd04723 65 DNDEAIRELAAAW-PLGLWVDGGIRSLENAQEWLKRG--ASRVIVGTETLPS-DDDEDRLAA 122 (233)
T ss_pred ccHHHHHHHHHhC-CCCEEEecCcCCHHHHHHHHHcC--CCeEEEcceeccc-hHHHHHHHh
Confidence 4667888887654 79999999999999999999997 9999999999999 888887654
No 216
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=96.65 E-value=0.0082 Score=68.23 Aligned_cols=58 Identities=17% Similarity=0.262 Sum_probs=50.0
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCH-----------HHHHHHHHcCCCccEEEEcHHhhhCC------------chHH
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSY-----------EDYTESLKKSPSISGVMIGRGALIKP------------WIFQ 591 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~-----------eda~~~l~~G~~aD~VmIGRgaL~dP------------~lf~ 591 (611)
.+++.|+++++. ..+||...|||+|. +++.+++..| ||-|.||..|+.+| .+++
T Consensus 301 ~~~~~i~~i~~~-~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~G--adkV~i~s~Av~~~~~~~~~~~~~~p~~i~ 377 (538)
T PLN02617 301 PMLEVLRRASEN-VFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSG--ADKISIGSDAVYAAEEYIASGVKTGKTSIE 377 (538)
T ss_pred hHHHHHHHHHhh-CCCCEEEcCCccccccccccccchHHHHHHHHHcC--CCEEEEChHHHhChhhhhccccccCHHHHH
Confidence 457888888776 48999999999997 6699999998 99999999999975 8888
Q ss_pred HHHc
Q psy9514 592 EIKE 595 (611)
Q Consensus 592 ei~~ 595 (611)
++.+
T Consensus 378 ~~~~ 381 (538)
T PLN02617 378 QISR 381 (538)
T ss_pred HHHH
Confidence 8865
No 217
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=96.61 E-value=0.035 Score=59.33 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=85.8
Q ss_pred HHHHHHHhh-cCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh--
Q psy9514 428 SVITCMNEV-SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI-- 504 (611)
Q Consensus 428 eIv~av~~~-~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~-- 504 (611)
+-++.+++. +++||..| |-.-+-.. +-....+|+|+|-+..+.-... + +.++.++.......
T Consensus 170 e~L~~vr~~~v~lPvLrK------DFIID~yQ-I~eAr~~GADAVLLIaaiL~~~-----~---L~~l~~~A~~LGme~L 234 (338)
T PLN02460 170 ENLEAIRNAGVKCPLLCK------EFIVDAWQ-IYYARSKGADAILLIAAVLPDL-----D---IKYMLKICKSLGMAAL 234 (338)
T ss_pred HHHHHHHHcCCCCCEeec------cccCCHHH-HHHHHHcCCCcHHHHHHhCCHH-----H---HHHHHHHHHHcCCeEE
Confidence 556788887 88999888 21111111 2223456777766665543211 1 12222222111111
Q ss_pred --hh--hcchhhHhc-CCceEEeccccccccccCCccHHHHHHHHh-----hC--CCCcEEEecCCCCHHHHHHHHHcCC
Q psy9514 505 --IH--NFMPKFRDW-GASLITLHGRTREQRYTKQADWDYIEKCAQ-----LC--SPAPLYGNGDILSYEDYTESLKKSP 572 (611)
Q Consensus 505 --~~--~~~~~l~~~-G~~~itihgrtr~g~~~~~a~~~~i~~~~k-----~~--~~iPVIgnGgI~s~eda~~~l~~G~ 572 (611)
++ .-+....+. |++.|-+..|.-. +-..|.....+++. .. .++-+|+.+||.|++|+..+...|
T Consensus 235 VEVH~~~ElerAl~~~ga~iIGINNRdL~---Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESGI~t~~Dv~~l~~~G- 310 (338)
T PLN02460 235 IEVHDEREMDRVLGIEGVELIGINNRSLE---TFEVDISNTKKLLEGERGEQIREKGIIVVGESGLFTPDDVAYVQNAG- 310 (338)
T ss_pred EEeCCHHHHHHHHhcCCCCEEEEeCCCCC---cceECHHHHHHHhhhccccccCCCCeEEEECCCCCCHHHHHHHHHCC-
Confidence 11 112233444 7777766555332 23345555555554 22 245689999999999999999987
Q ss_pred CccEEEEcHHhhhCCchHHHHHc
Q psy9514 573 SISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 573 ~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+|+|.||.+++..|+.-..+++
T Consensus 311 -adAvLVGEsLMr~~dp~~~l~~ 332 (338)
T PLN02460 311 -VKAVLVGESLVKQDDPGKGIAG 332 (338)
T ss_pred -CCEEEECHHHhCCCCHHHHHHH
Confidence 9999999999999987666544
No 218
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.59 E-value=0.0015 Score=43.34 Aligned_cols=23 Identities=43% Similarity=1.081 Sum_probs=17.3
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCcCC
Q psy9514 74 DCYCPFLKDSTLEQTCKYGEKCKFVHD 100 (611)
Q Consensus 74 ~~lC~~~~~~~~~~~C~~g~~C~f~Hd 100 (611)
..+|+.|.. +.|++|++|+|+|+
T Consensus 4 ~~~C~~~~~----g~C~~g~~C~~~H~ 26 (27)
T smart00356 4 TELCKFFKR----GYCPYGDRCKFAHP 26 (27)
T ss_pred CCcCcCccC----CCCCCCCCcCCCCc
Confidence 457888844 35888888888887
No 219
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.55 E-value=0.043 Score=56.98 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=42.7
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCC--CHHHHHHHH----HcCCCccEEEEcHHhhhCCchHHH
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDIL--SYEDYTESL----KKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~--s~eda~~~l----~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
+.+.++++++. .++||++.|||. |++++.+++ +.| ++|+.+||.++..|+.-..
T Consensus 184 ~~~~l~~~~~~-~~ipV~a~GGi~~~~~~~~l~~v~~~~~aG--A~Gis~gr~i~~~~~p~~~ 243 (267)
T PRK07226 184 DPESFREVVEG-CPVPVVIAGGPKTDTDREFLEMVRDAMEAG--AAGVAVGRNVFQHEDPEAI 243 (267)
T ss_pred CHHHHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcC--CcEEehhhhhhcCCCHHHH
Confidence 34566666553 479999999999 999888886 776 9999999999998874433
No 220
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=96.55 E-value=0.055 Score=53.84 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=74.6
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
.|+|.||+.+ + +|..+..+.+.+.+-+..+++.+ +.|+.|-+=.+.. +.+.....++...++|+|+|-
T Consensus 81 ~GAdevdvv~--------~--~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IK 149 (203)
T cd00959 81 DGADEIDMVI--------N--IGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL-TDEEIIKACEIAIEAGADFIK 149 (203)
T ss_pred cCCCEEEEee--------c--HHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEE
Confidence 4999999852 1 23333456666777777777766 4555543333322 234566777888999999987
Q ss_pred EEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcE
Q psy9514 473 LHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPL 552 (611)
Q Consensus 473 vhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPV 552 (611)
..-+... . -..+.+...+.+.++ .++||
T Consensus 150 TsTG~~~-~-------------------------------------------------~at~~~v~~~~~~~~--~~v~i 177 (203)
T cd00959 150 TSTGFGP-G-------------------------------------------------GATVEDVKLMKEAVG--GRVGV 177 (203)
T ss_pred cCCCCCC-C-------------------------------------------------CCCHHHHHHHHHHhC--CCceE
Confidence 6422100 0 011123344455544 47899
Q ss_pred EEecCCCCHHHHHHHHHcCCCccE
Q psy9514 553 YGNGDILSYEDYTESLKKSPSISG 576 (611)
Q Consensus 553 IgnGgI~s~eda~~~l~~G~~aD~ 576 (611)
.+.|||.|++++.+++..| ++-
T Consensus 178 k~aGGikt~~~~l~~~~~g--~~r 199 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAG--ATR 199 (203)
T ss_pred EEeCCCCCHHHHHHHHHhC--hhh
Confidence 9999999999999999987 653
No 221
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.55 E-value=0.052 Score=54.92 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=42.7
Q ss_pred cHHHHHHHHhhCCCCcEEEecCC--CCHHH----HHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDI--LSYED----YTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI--~s~ed----a~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.+.++++++. .++||++.||+ .|+++ +.++++.| +++|.+||.++..|+....++
T Consensus 167 ~~~~~~~i~~~-~~~pvv~~GG~~~~~~~~~l~~~~~~~~~G--a~gv~vg~~i~~~~dp~~~~~ 228 (235)
T cd00958 167 DAESFKEVVEG-CPVPVVIAGGPKKDSEEEFLKMVYDAMEAG--AAGVAVGRNIFQRPDPVAMLR 228 (235)
T ss_pred CHHHHHHHHhc-CCCCEEEeCCCCCCCHHHHHHHHHHHHHcC--CcEEEechhhhcCCCHHHHHH
Confidence 34566776664 47899998887 67766 67778877 999999999999887555443
No 222
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=96.54 E-value=0.0096 Score=61.10 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=54.4
Q ss_pred hcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 514 ~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
+.|+..|=+.-|.=. +-.-+.+...+++...+ ++-+|+-.||+|++|+..+...| +|+|.||.+++..|..-+.
T Consensus 174 ~~ga~iIGINnRdL~---tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~g--a~a~LVG~slM~~~~~~~a 248 (254)
T COG0134 174 KLGAKIIGINNRDLT---TLEVDLETTEKLAPLIPKDVILISESGISTPEDVRRLAKAG--ADAFLVGEALMRADDPEEA 248 (254)
T ss_pred hCCCCEEEEeCCCcc---hheecHHHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcC--CCEEEecHHHhcCCCHHHH
Confidence 367766654433221 12234555555555443 37799999999999999999987 9999999999999998665
Q ss_pred HH
Q psy9514 593 IK 594 (611)
Q Consensus 593 i~ 594 (611)
++
T Consensus 249 ~~ 250 (254)
T COG0134 249 LR 250 (254)
T ss_pred HH
Confidence 54
No 223
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=96.53 E-value=0.12 Score=52.45 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=90.0
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEE
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR 446 (611)
+|+++.+.-|++..+...|... |.+.|-+|.-|-.. ....| .++.+...+.+....+...+. -++-||--
T Consensus 86 iPvGvNVLrNd~vaA~~IA~a~----gA~FIRVN~~tg~~-~tdqG---iieg~A~e~~r~r~~L~~~v~vlADv~VKHa 157 (263)
T COG0434 86 IPVGVNVLRNDAVAALAIAYAV----GADFIRVNVLTGAY-ATDQG---IIEGNAAELARYRARLGSRVKVLADVHVKHA 157 (263)
T ss_pred ccceeeeeccccHHHHHHHHhc----CCCEEEEEeeeceE-ecccc---eecchHHHHHHHHHhccCCcEEEeecchhcc
Confidence 4678888888887777766554 88999888665411 11222 233344444333333331111 12222321
Q ss_pred ccccCCchHHHHHHH-HHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 447 TGIHKDNNIIHNFMP-KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 447 ~g~~~~~~~a~~la~-~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
.-. ......+.++ .++..++|+|.++|+..
T Consensus 158 ~~l--~~~~~~~~v~dtver~~aDaVI~tG~~T----------------------------------------------- 188 (263)
T COG0434 158 VHL--GNRSLEEAVKDTVERGLADAVIVTGSRT----------------------------------------------- 188 (263)
T ss_pred ccc--CCcCHHHHHHHHHHccCCCEEEEecccC-----------------------------------------------
Confidence 111 1112333344 47778888888888652
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
-.+++.+.+..+.+ ..++||+.+-|+ +++.+.+++.. +||+++|..+=.+-
T Consensus 189 ------G~~~d~~el~~a~~-~~~~pvlvGSGv-~~eN~~~~l~~---adG~IvgT~lK~~G 239 (263)
T COG0434 189 ------GSPPDLEELKLAKE-AVDTPVLVGSGV-NPENIEELLKI---ADGVIVGTSLKKGG 239 (263)
T ss_pred ------CCCCCHHHHHHHHh-ccCCCEEEecCC-CHHHHHHHHHH---cCceEEEEEEccCC
Confidence 23456777776544 457999988887 69999999985 89999998765443
No 224
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.52 E-value=0.11 Score=51.19 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=98.7
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
+++.=+.+.+++.+...++.+. ..|++.|||-.--+. ..++++.+++.. |. ++...+.
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~------------------~~e~~~~~~~~~--~~-~~~g~gt 70 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQ------------------PAELISQLREKL--PE-CIIGTGT 70 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCC------------------HHHHHHHHHHhC--CC-cEEeEEE
Confidence 4455577778899998888876 358999998543330 123344443322 21 1111111
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhh----cccCchhhhhcchhhHhcCCceEEeccc
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL----CSRDNNIIHNFMPKFRDWGASLITLHGR 525 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~----~~~~~~~~~~~~~~l~~~G~~~itihgr 525 (611)
- ...+-++...++|++.|++-.-... .+.-+... +.- -.+...+....+.|++++-++.
T Consensus 71 v----l~~d~~~~A~~~gAdgv~~p~~~~~----------~~~~~~~~~~~~i~G--~~t~~e~~~A~~~Gadyv~~Fp- 133 (187)
T PRK07455 71 I----LTLEDLEEAIAAGAQFCFTPHVDPE----------LIEAAVAQDIPIIPG--ALTPTEIVTAWQAGASCVKVFP- 133 (187)
T ss_pred E----EcHHHHHHHHHcCCCEEECCCCCHH----------HHHHHHHcCCCEEcC--cCCHHHHHHHHHCCCCEEEECc-
Confidence 0 1113455667889999854322110 00111100 000 0111223345568999997733
Q ss_pred cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 526 TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 526 tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
| ......++++.+......+||++.||| |++++.++++.| +++|.++.+++.
T Consensus 134 t-----~~~~G~~~l~~~~~~~~~ipvvaiGGI-~~~n~~~~l~aG--a~~vav~s~i~~ 185 (187)
T PRK07455 134 V-----QAVGGADYIKSLQGPLGHIPLIPTGGV-TLENAQAFIQAG--AIAVGLSGQLFP 185 (187)
T ss_pred C-----CcccCHHHHHHHHhhCCCCcEEEeCCC-CHHHHHHHHHCC--CeEEEEehhccc
Confidence 1 112246788888776657999999999 799999999987 999999977653
No 225
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=96.51 E-value=0.0075 Score=61.38 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=51.6
Q ss_pred ccCCccHHHHHHHHhhCCCC-cEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc-hHHHHHc
Q psy9514 531 YTKQADWDYIEKCAQLCSPA-PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW-IFQEIKE 595 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~i-PVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~-lf~ei~~ 595 (611)
+..+.+.+.++++.+.. ++ ||+..|||+|++++.+++..| ||+|.||..+..||. .++++++
T Consensus 166 ~g~~~~~e~I~~v~~~~-~~~pvivGGGIrs~e~a~~~l~~G--AD~VVVGSai~~d~~~~~~~~~~ 229 (232)
T PRK04169 166 AGDPVPPEMVKAVKKAL-DITPLIYGGGIRSPEQARELMAAG--ADTIVVGNIIEEDPKKTVKAIKK 229 (232)
T ss_pred CCCCCCHHHHHHHHHhc-CCCcEEEECCCCCHHHHHHHHHhC--CCEEEEChHHhhCHHHHHHHHHh
Confidence 34556788899887754 66 999999999999999999987 999999999999998 5555543
No 226
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.49 E-value=0.048 Score=58.33 Aligned_cols=150 Identities=12% Similarity=-0.022 Sum_probs=89.7
Q ss_pred CCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCC-cchhhccCCC----ccccc-----cccceeeecccCchHH
Q psy9514 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCP-IEFIYKQGSG----SGLLQ-----RANLFGVQLCGNNPYV 382 (611)
Q Consensus 313 e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp-~~~~~~~~~~----~~l~~-----~~~~~ivQi~g~~p~~ 382 (611)
+.++++||+|..++.+..+++.+.+. +++++++|++|| .+........ .+++. .+.|+++-+..+- .+
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~-gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~-~~ 176 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEA-GADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFF-SA 176 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCc-cC
Confidence 57899999999999999998888764 589999999984 3221111000 11111 1578888887652 24
Q ss_pred HHHHHHHHHHhcccceEEeccCCCccce--------eccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCch
Q psy9514 383 LTKCTQLLEEQMVVDFVDVNLGCPIEFI--------YKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN 454 (611)
Q Consensus 383 ~~~aA~~l~~~~g~D~IELN~gCP~~~v--------~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~ 454 (611)
+...++.+. ..|+|+|.++-.-+...+ ...|+.+.-+ .....+++..+++.+++||+.- |. ..
T Consensus 177 ~~~~a~~l~-~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~--~~~al~~v~~v~~~~~ipIig~---GG---I~ 247 (325)
T cd04739 177 LAHMAKQLD-AAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAE--IRLPLRWIAILSGRVKASLAAS---GG---VH 247 (325)
T ss_pred HHHHHHHHH-HcCCCeEEEEcCcCCCCccccccceecCCCcCCccc--hhHHHHHHHHHHcccCCCEEEE---CC---CC
Confidence 555555553 459999988543321111 1112212111 1245567777877778887652 32 22
Q ss_pred HHHHHHHHHHHcCCCEEEEE
Q psy9514 455 IIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~Itvh 474 (611)
......+.+. +|+++|.|-
T Consensus 248 s~~Da~e~l~-aGA~~Vqv~ 266 (325)
T cd04739 248 DAEDVVKYLL-AGADVVMTT 266 (325)
T ss_pred CHHHHHHHHH-cCCCeeEEe
Confidence 3344555554 899999875
No 227
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.49 E-value=0.17 Score=50.56 Aligned_cols=168 Identities=10% Similarity=0.076 Sum_probs=105.1
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
+++.=+.+.+++++...++.+. ..|+..|||-+.-|. ..+.++.+++..+ . +.+-.|.
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~-~gGi~~iEit~~tp~------------------a~~~I~~l~~~~~-~--~~vGAGT 62 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALA-AGGLPAIEITLRTPA------------------ALDAIRAVAAEVE-E--AIVGAGT 62 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCcc------------------HHHHHHHHHHHCC-C--CEEeeEe
Confidence 4566677889999999999986 469999999877661 2456666665542 2 3333333
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceEEec
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLITLH 523 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~itih 523 (611)
--+ .+-++.+.++|+++|.--+-. .++.+.+++.+.. +..-+-...++|++.|-+.
T Consensus 63 Vl~----~e~a~~ai~aGA~FivSP~~~--------------~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 63 ILN----AKQFEDAAKAGSRFIVSPGTT--------------QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CcC----HHHHHHHHHcCCCEEECCCCC--------------HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEC
Confidence 222 245678889999987432222 1222222222111 1222335677899998764
Q ss_pred cccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 524 grtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.-.. . ....|++.+..-++.+|++..||| +++.+.++++.| .+ .+..| +.|.+.
T Consensus 125 Pa~~----~--GG~~yikal~~plp~~~l~ptGGV-~~~n~~~~l~ag-~~-~~~gg-s~l~~~ 178 (201)
T PRK06015 125 PAEQ----A--GGAAFLKALSSPLAGTFFCPTGGI-SLKNARDYLSLP-NV-VCVGG-SWVAPK 178 (201)
T ss_pred Cchh----h--CCHHHHHHHHhhCCCCcEEecCCC-CHHHHHHHHhCC-Ce-EEEEc-hhhCCc
Confidence 3111 0 124678887777789999999999 579999999997 44 55546 444444
No 228
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.40 E-value=0.17 Score=52.40 Aligned_cols=186 Identities=13% Similarity=0.149 Sum_probs=102.3
Q ss_pred chHHHHHHHHHHHHhcccceEEec--cCCCccceeccc-----cc-cccc--cChHHHHHHHHHHHhh-cCCCEEEEEEc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVN--LGCPIEFIYKQG-----SG-SGLL--QRANILQSVITCMNEV-SSLPITVKTRT 447 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN--~gCP~~~v~~~g-----~G-saLl--~r~~~l~eIv~av~~~-~~~PvtVKiR~ 447 (611)
+++...++++.+. ..|+|.|||- ++=| .-+| .+ -+|- -..+...++++.+++. .++|+.+-.=.
T Consensus 29 ~~e~s~e~i~~L~-~~GaD~iELGvPfSDP----vADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~ 103 (265)
T COG0159 29 DLETSLEIIKTLV-EAGADILELGVPFSDP----VADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYY 103 (265)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEecCCCCCc----CccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 5566777777664 4699999983 3444 2233 11 1232 2467788999999955 67898876432
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---------hhhcchhhHhcCCc
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI---------IHNFMPKFRDWGAS 518 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~---------~~~~~~~l~~~G~~ 518 (611)
..- -..-..++++.+.++|++.+.|-.=..+.. .++....++.... .++.++.+.+..-.
T Consensus 104 Npi-~~~Gie~F~~~~~~~GvdGlivpDLP~ee~----------~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~G 172 (265)
T COG0159 104 NPI-FNYGIEKFLRRAKEAGVDGLLVPDLPPEES----------DELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASG 172 (265)
T ss_pred cHH-HHhhHHHHHHHHHHcCCCEEEeCCCChHHH----------HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCC
Confidence 100 001234678888899999887643221111 0111111111110 11222233333222
Q ss_pred eE---EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 519 LI---TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 519 ~i---tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.+ ...|-|....-....-.+.+.++ ++..++||...=||.+++++.++.+. +|||+||.++.
T Consensus 173 FiY~vs~~GvTG~~~~~~~~~~~~v~~v-r~~~~~Pv~vGFGIs~~e~~~~v~~~---ADGVIVGSAiV 237 (265)
T COG0159 173 FIYYVSRMGVTGARNPVSADVKELVKRV-RKYTDVPVLVGFGISSPEQAAQVAEA---ADGVIVGSAIV 237 (265)
T ss_pred cEEEEecccccCCCcccchhHHHHHHHH-HHhcCCCeEEecCcCCHHHHHHHHHh---CCeEEEcHHHH
Confidence 22 22333332211011123445554 44569999988899999999999985 89999998764
No 229
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.36 E-value=0.025 Score=60.21 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=103.4
Q ss_pred hccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc-----------------ccce
Q psy9514 309 RHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR-----------------ANLF 371 (611)
Q Consensus 309 ~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~-----------------~~~~ 371 (611)
.++.+.++++||+|++|+.+.++|..+.+. +++.||||+|||.+.....+.++.|+.+ +.++
T Consensus 58 ~~~~e~p~~vQl~g~~p~~~~~aA~~~~~~-g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pV 136 (312)
T PRK10550 58 RTPSGTLVRIQLLGQYPQWLAENAARAVEL-GSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPV 136 (312)
T ss_pred CCCCCCcEEEEeccCCHHHHHHHHHHHHHc-CCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcce
Confidence 356678999999999999999999887664 6899999999999887777766665532 2567
Q ss_pred eeeccc--CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 372 GVQLCG--NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 372 ivQi~g--~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
.+-+.. .+.+.+.+.++.++ .+|+|.|.||..-. ..+|.+... ++ +.++.+++.+++||+.- |
T Consensus 137 svKiR~g~~~~~~~~~~a~~l~-~~Gvd~i~Vh~Rt~-----~~~y~g~~~-~~----~~i~~ik~~~~iPVi~n---G- 201 (312)
T PRK10550 137 TVKVRLGWDSGERKFEIADAVQ-QAGATELVVHGRTK-----EDGYRAEHI-NW----QAIGEIRQRLTIPVIAN---G- 201 (312)
T ss_pred EEEEECCCCCchHHHHHHHHHH-hcCCCEEEECCCCC-----ccCCCCCcc-cH----HHHHHHHhhcCCcEEEe---C-
Confidence 776543 34455778888875 57999999996543 234432111 33 56677777778887653 3
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
+..+.....+.++..|+|.|.| ||
T Consensus 202 --dI~t~~da~~~l~~~g~DgVmi-GR 225 (312)
T PRK10550 202 --EIWDWQSAQQCMAITGCDAVMI-GR 225 (312)
T ss_pred --CcCCHHHHHHHHhccCCCEEEE-cH
Confidence 2233345555667899999876 44
No 230
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=96.34 E-value=0.00092 Score=44.95 Aligned_cols=23 Identities=39% Similarity=1.060 Sum_probs=17.9
Q ss_pred CCCCcceeccccCCCCCccccCc
Q psy9514 113 SEQCYVFLQHGYCPMGIACRFGS 135 (611)
Q Consensus 113 ~~~C~~~~~~G~C~~G~~Crf~~ 135 (611)
...|..|...|.|+||.+|+|+.
T Consensus 3 ~~~C~~f~~~g~C~~G~~C~f~H 25 (27)
T PF00642_consen 3 TKLCRFFMRTGTCPFGDKCRFAH 25 (27)
T ss_dssp SSB-HHHHHTS--TTGGGSSSBS
T ss_pred cccChhhccCCccCCCCCcCccC
Confidence 35899999999999999999985
No 231
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=96.31 E-value=0.091 Score=57.89 Aligned_cols=161 Identities=11% Similarity=0.069 Sum_probs=93.1
Q ss_pred ChHHHHHHHHHHHhh-c-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccc----cccccCcC-----hhH
Q psy9514 422 RANILQSVITCMNEV-S-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE----QRYTKQAD-----WDY 490 (611)
Q Consensus 422 r~~~l~eIv~av~~~-~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~----qr~~~~ad-----w~~ 490 (611)
.++.+++-|+.+++. . +.|+-|-+-.... +......+++.+.+.||..|..++.... .+|. .++ +..
T Consensus 49 ~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~-~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r-~~G~~~~~~g~ 126 (418)
T cd04742 49 PLDEVEQAIERIQAALGNGEPYGVNLIHSPD-EPELEEGLVDLFLRHGVRVVEASAFMQLTPALVRYR-AKGLRRDADGR 126 (418)
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEeeecCCC-CchhHHHHHHHHHHcCCCEEEeccccCCCcchhhHH-hcCCccccccc
Confidence 589999999999986 4 7898887754322 2222346778888999998887753110 0110 000 000
Q ss_pred HHHHhhhccc------------------------CchhhhhcchhhHhcC-CceEEeccccccccccCCc-cHHHHHHHH
Q psy9514 491 IEKCAQLCSR------------------------DNNIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQA-DWDYIEKCA 544 (611)
Q Consensus 491 i~~~~~~~~~------------------------~~~~~~~~~~~l~~~G-~~~itihgrtr~g~~~~~a-~~~~i~~~~ 544 (611)
+..-..++.+ ....+.+.+..+.+.| ++.|++- ...|+.++.. .+..+..+.
T Consensus 127 ~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq--~EAGGH~g~~~~~~Llp~v~ 204 (418)
T cd04742 127 VQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE--ADSGGHTDNRPLSVLLPTII 204 (418)
T ss_pred ccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc--ccCCCCCCCccHHhHHHHHH
Confidence 0000000000 0000122233344445 6888885 2334443321 223333322
Q ss_pred ---hhC-------CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 545 ---QLC-------SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 545 ---k~~-------~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
... .++|||+.|||.|++++..++..| +|+|++|...+.=++
T Consensus 205 ~l~d~v~~~~~~~~~ipViAAGGI~tg~~vaAA~alG--Ad~V~~GT~flat~E 256 (418)
T cd04742 205 RLRDELAARYGYRRPIRVGAAGGIGTPEAAAAAFALG--ADFIVTGSINQCTVE 256 (418)
T ss_pred HHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHcC--CcEEeeccHHHhCcc
Confidence 221 269999999999999999999998 999999999998553
No 232
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=96.30 E-value=0.032 Score=55.40 Aligned_cols=168 Identities=15% Similarity=0.106 Sum_probs=100.8
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.+++.=+.+.+++++.+.++.+. ..|+..|||-+.-| . ..++++.+++..+ .+.| -.|
T Consensus 8 ~~iiaVir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~---~---------------a~~~I~~l~~~~p-~~~v--GAG 65 (196)
T PF01081_consen 8 NKIIAVIRGDDPEDAVPIAEALI-EGGIRAIEITLRTP---N---------------ALEAIEALRKEFP-DLLV--GAG 65 (196)
T ss_dssp HSEEEEETTSSGGGHHHHHHHHH-HTT--EEEEETTST---T---------------HHHHHHHHHHHHT-TSEE--EEE
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCc---c---------------HHHHHHHHHHHCC-CCee--EEE
Confidence 35566677888899999998886 35999999986555 1 2456676666553 2333 333
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceEEe
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLITL 522 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~iti 522 (611)
.-- ..+-++.+.++|++++.--+-. .++.+.+.+.+.. +..-+-...++|++.+-+
T Consensus 66 TV~----~~e~a~~a~~aGA~FivSP~~~--------------~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~ 127 (196)
T PF01081_consen 66 TVL----TAEQAEAAIAAGAQFIVSPGFD--------------PEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKL 127 (196)
T ss_dssp S------SHHHHHHHHHHT-SEEEESS----------------HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEE
T ss_pred ecc----CHHHHHHHHHcCCCEEECCCCC--------------HHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEE
Confidence 222 2345777889999986532221 1222222221111 112233566789998876
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..-... ....|++.+..-++.++++..|||+ ++.+.++++.| +.+|.+|..+..
T Consensus 128 FPA~~~------GG~~~ik~l~~p~p~~~~~ptGGV~-~~N~~~~l~ag--~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 128 FPAGAL------GGPSYIKALRGPFPDLPFMPTGGVN-PDNLAEYLKAG--AVAVGGGSWLFP 181 (196)
T ss_dssp TTTTTT------THHHHHHHHHTTTTT-EEEEBSS---TTTHHHHHTST--TBSEEEESGGGS
T ss_pred ecchhc------CcHHHHHHHhccCCCCeEEEcCCCC-HHHHHHHHhCC--CEEEEECchhcC
Confidence 432111 1257888887777889999999995 69999999998 999999965544
No 233
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=96.28 E-value=0.1 Score=57.93 Aligned_cols=158 Identities=13% Similarity=0.095 Sum_probs=90.1
Q ss_pred ChHHHHHHHHHHHhhcCC-C-EEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccccc----cccc-----CcC--h
Q psy9514 422 RANILQSVITCMNEVSSL-P-ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ----RYTK-----QAD--W 488 (611)
Q Consensus 422 r~~~l~eIv~av~~~~~~-P-vtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~q----r~~~-----~ad--w 488 (611)
.++.+++-|+.+++.++. | +-|-+-.... +...-..+++.+.+.|+..|..++..... +|.. .++ |
T Consensus 54 ~~e~l~~~I~~ir~~~~~~p~fGVNL~~~~~-~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~v~~r~~G~~~~~~g~~ 132 (444)
T TIGR02814 54 PLEEVEQAIHRIQQALPGGPAYGVNLIHSPS-DPALEWGLVDLLLRHGVRIVEASAFMQLTPALVRYRAKGLHRDADGRV 132 (444)
T ss_pred CHHHHHHHHHHHHHhcCCCCceEEEecccCC-CcccHHHHHHHHHHcCCCEEEeccccCCCcchhhhhhccccccccccc
Confidence 588999999999987754 5 8777643321 22222456777788999988877542110 1000 000 0
Q ss_pred hHHHHHhhhccc-Cchhh---------hhcchhh--------------HhcC-CceEEeccccccccccCC-ccHHHHHH
Q psy9514 489 DYIEKCAQLCSR-DNNII---------HNFMPKF--------------RDWG-ASLITLHGRTREQRYTKQ-ADWDYIEK 542 (611)
Q Consensus 489 ~~i~~~~~~~~~-~~~~~---------~~~~~~l--------------~~~G-~~~itihgrtr~g~~~~~-a~~~~i~~ 542 (611)
..-. .++.+ ..... ...++.+ .+.| ++.|++- ...|+.++. ..+..+..
T Consensus 133 ~~~~---~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve--~EAGGHtg~~~~~~Llp~ 207 (444)
T TIGR02814 133 VIRN---RLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE--ADSGGHTDNRPLVVLLPA 207 (444)
T ss_pred cccc---eEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe--ccCCCCCCCCcHHHHHHH
Confidence 0000 00000 00000 1122233 3444 6888773 333444332 22333443
Q ss_pred HH---hhC-------CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 543 CA---QLC-------SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 543 ~~---k~~-------~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
++ ... .+||||+.|||.|++++..++..| +|+|++|...+.=+
T Consensus 208 i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLG--AdgV~~GT~flat~ 260 (444)
T TIGR02814 208 IIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLG--ADFIVTGSVNQCTV 260 (444)
T ss_pred HHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcC--CcEEEeccHHHhCc
Confidence 32 111 278999999999999999999998 99999999999854
No 234
>PRK08005 epimerase; Validated
Probab=96.27 E-value=0.32 Score=48.90 Aligned_cols=187 Identities=10% Similarity=0.115 Sum_probs=109.0
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+..++...++..+.+-.+.+.+ .|+|.| |+-=|+= ..+..+-..+++++++..+.|+-|-+=+.
T Consensus 3 i~pSil~ad~~~l~~el~~l~~-~g~d~lHiDvMDG~F-------------VPN~tfG~~~i~~l~~~t~~~~DvHLMv~ 68 (210)
T PRK08005 3 LHPSLASADPLRYAEALTALHD-APLGSLHLDIEDTSF-------------INNITFGMKTIQAVAQQTRHPLSFHLMVS 68 (210)
T ss_pred EEeehhhCCHHHHHHHHHHHHH-CCCCEEEEeccCCCc-------------CCccccCHHHHHHHHhcCCCCeEEEeccC
Confidence 3456777777777777777753 355554 4433331 12223336778889887788877764321
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCCc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGAS 518 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~~ 518 (611)
.-..+++.+.++|++.|++|--.... +....+.+++...+ ...+.+-+. -++
T Consensus 69 ------~P~~~i~~~~~~gad~It~H~Ea~~~----------~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~--~vD 130 (210)
T PRK08005 69 ------SPQRWLPWLAAIRPGWIFIHAESVQN----------PSEILADIRAIGAKAGLALNPATPLLPYRYLAL--QLD 130 (210)
T ss_pred ------CHHHHHHHHHHhCCCEEEEcccCccC----------HHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHH--hcC
Confidence 23468899999999999999863211 11222223332221 111222222 355
Q ss_pred eEEecc---ccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 519 LITLHG---RTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 519 ~itihg---rtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
.|++.. ....+.+. +.-++-|+++.+......|-.=||| +.+.+.++.+.| ||.+++|++++..++.-+.+
T Consensus 131 ~VlvMsV~PGf~GQ~f~-~~~~~KI~~l~~~~~~~~I~VDGGI-~~~~i~~l~~aG--ad~~V~GsaiF~~~d~~~~~ 204 (210)
T PRK08005 131 ALMIMTSEPDGRGQQFI-AAMCEKVSQSREHFPAAECWADGGI-TLRAARLLAAAG--AQHLVIGRALFTTANYDVTL 204 (210)
T ss_pred EEEEEEecCCCccceec-HHHHHHHHHHHHhcccCCEEEECCC-CHHHHHHHHHCC--CCEEEEChHhhCCCCHHHHH
Confidence 564432 22222211 1234455655544334467788999 599999999998 99999999988766644433
No 235
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.24 E-value=0.21 Score=50.63 Aligned_cols=172 Identities=12% Similarity=0.079 Sum_probs=107.7
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEE
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTR 446 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR 446 (611)
.+++.=+.+.+++++...++.+. ..|+..|||=+--|. ..+.++.+++.. ..| .+.+-
T Consensus 15 ~~vi~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~------------------a~~~i~~l~~~~~~~~p-~~~vG 74 (222)
T PRK07114 15 TGMVPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDF------------------AHEVFAELVKYAAKELP-GMILG 74 (222)
T ss_pred CCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCc------------------HHHHHHHHHHHHHhhCC-CeEEe
Confidence 34555577889999999999886 469999999765551 234455554322 123 22233
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceE
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLI 520 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~i 520 (611)
.|.--+ .+-++.+.++|+++|.--+-. .++.+.+.+.+.. +..-+-...++|++.+
T Consensus 75 aGTVl~----~e~a~~a~~aGA~FiVsP~~~--------------~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~v 136 (222)
T PRK07114 75 VGSIVD----AATAALYIQLGANFIVTPLFN--------------PDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIV 136 (222)
T ss_pred eEeCcC----HHHHHHHHHcCCCEEECCCCC--------------HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEE
Confidence 332222 244677889999987533322 1122222222111 1122335667899998
Q ss_pred EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCC-HHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 521 TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS-YEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 521 tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s-~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
-+..- ......|++.+..-++.++++..|||+- .+++.+++..| +.+|.+|..+..+.
T Consensus 137 KlFPA-------~~~G~~~ikal~~p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~~~ 195 (222)
T PRK07114 137 KLFPG-------SVYGPGFVKAIKGPMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIPKE 195 (222)
T ss_pred EECcc-------cccCHHHHHHHhccCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcCcc
Confidence 76541 1123577887776677899999999974 58999999987 99999998876433
No 236
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=96.21 E-value=0.16 Score=51.42 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=57.0
Q ss_pred hHhcCCceEEecccc-ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 512 FRDWGASLITLHGRT-REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 512 l~~~G~~~itihgrt-r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
..+.|++++.+..-. ..-....+...+.++.+.+. .++||++-||| +++++.++++.| +|+|.+-++++..++..
T Consensus 127 A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~-~~iPvvAIGGI-~~~n~~~~~~~G--A~giAvisai~~~~dp~ 202 (221)
T PRK06512 127 IGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM-IEIPCIVQAGS-DLASAVEVAETG--AEFVALERAVFDAHDPP 202 (221)
T ss_pred hhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHh-CCCCEEEEeCC-CHHHHHHHHHhC--CCEEEEhHHhhCCCCHH
Confidence 456899999774432 11012233456666665554 58999999999 899999999998 99999999999777655
Q ss_pred HHHH
Q psy9514 591 QEIK 594 (611)
Q Consensus 591 ~ei~ 594 (611)
..++
T Consensus 203 ~a~~ 206 (221)
T PRK06512 203 LAVA 206 (221)
T ss_pred HHHH
Confidence 4443
No 237
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.17 E-value=0.059 Score=57.66 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=86.4
Q ss_pred CCCeEEEEecCCC-------hhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCc----cccc------c----ccc
Q psy9514 312 SEDLFGVQLCGNN-------PYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS----GLLQ------R----ANL 370 (611)
Q Consensus 312 ~e~~~~vQi~g~~-------p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~----~l~~------~----~~~ 370 (611)
.+.++++||.|+. .+.+..+++.+... ++++++|++||........... ++++ . +.|
T Consensus 127 ~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~~--ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~P 204 (327)
T cd04738 127 RGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGPY--ADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVP 204 (327)
T ss_pred CCCeEEEEEeCCCCCcccccHHHHHHHHHHHHhh--CCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCC
Confidence 3578999999886 34566666655543 7899999999975311111111 1111 1 268
Q ss_pred eeeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccc-----eeccccccccccCh--HHHHHHHHHHHhhc--CCC
Q psy9514 371 FGVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF-----IYKQGSGSGLLQRA--NILQSVITCMNEVS--SLP 440 (611)
Q Consensus 371 ~ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~-----v~~~g~GsaLl~r~--~~l~eIv~av~~~~--~~P 440 (611)
+.+-+.-+ +.+++.+.|+.+. .+|+|+|-++-.=+... ....+.|+ +-..+ ....+.+..+++.+ ++|
T Consensus 205 v~vKl~~~~~~~~~~~ia~~l~-~aGad~I~~~n~~~~~~~~~~~~~~~~~gG-~sG~~~~~~~l~~v~~l~~~~~~~ip 282 (327)
T cd04738 205 LLVKIAPDLSDEELEDIADVAL-EHGVDGIIATNTTISRPGLLRSPLANETGG-LSGAPLKERSTEVLRELYKLTGGKIP 282 (327)
T ss_pred eEEEeCCCCCHHHHHHHHHHHH-HcCCcEEEEECCcccccccccccccCCCCc-cCChhhhHHHHHHHHHHHHHhCCCCc
Confidence 88888754 3346777777764 46999999754321100 11111221 11111 14467788888877 466
Q ss_pred EEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 441 vtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
|.. .|. ..+.....+.+. +|+++|.|.-
T Consensus 283 Ii~---~GG---I~t~~da~e~l~-aGAd~V~vg~ 310 (327)
T cd04738 283 IIG---VGG---ISSGEDAYEKIR-AGASLVQLYT 310 (327)
T ss_pred EEE---ECC---CCCHHHHHHHHH-cCCCHHhccH
Confidence 654 232 222334444554 8999987743
No 238
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.12 E-value=0.17 Score=54.24 Aligned_cols=140 Identities=15% Similarity=0.144 Sum_probs=81.2
Q ss_pred hhHHHHHHHHhhhccceeeeccCCC---------Cc-chhhccCCCc---------ccc-------ccccceeeecc---
Q psy9514 326 YVLTKCTQLLEEQMAVDFVDVNLGC---------PI-EFIYKQGSGS---------GLL-------QRANLFGVQLC--- 376 (611)
Q Consensus 326 ~~~~~~a~~l~~~~~v~~idln~gc---------p~-~~~~~~~~~~---------~l~-------~~~~~~ivQi~--- 376 (611)
+.+..+|+... ..++|.|+||++| |. +..-+..+++ +.+ ..+.++.+-+.
T Consensus 149 ~~~~~aA~ra~-~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~ 227 (338)
T cd04733 149 DRFAHAARLAQ-EAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHHHHHH-HcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence 34456666554 4689999999886 54 2222333332 011 01345666663
Q ss_pred ----cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCC
Q psy9514 377 ----GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452 (611)
Q Consensus 377 ----g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~ 452 (611)
|.+++++.+.++.++ ..|+|.|+++.|...........-......+....++.+.+++.+++||.+-=++
T Consensus 228 ~~~~g~~~eea~~ia~~Le-~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i----- 301 (338)
T cd04733 228 FQRGGFTEEDALEVVEALE-EAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTPLMVTGGF----- 301 (338)
T ss_pred cCCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCCEEEeCCC-----
Confidence 558888888888886 4689999999886422121100000111223334567778888889998875332
Q ss_pred chHHHHHHHHHHHcCCCEEEE
Q psy9514 453 NNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~Itv 473 (611)
.....+.+.+++.++|+|.+
T Consensus 302 -~t~~~a~~~l~~g~aD~V~l 321 (338)
T cd04733 302 -RTRAAMEQALASGAVDGIGL 321 (338)
T ss_pred -CCHHHHHHHHHcCCCCeeee
Confidence 22334555666667898765
No 239
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=96.10 E-value=0.51 Score=47.90 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=107.0
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhh-cCCCEEEEEEc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRT 447 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~ 447 (611)
+..++...+...+.+-.+.+++ .|+|.| |+-=|+= ..+..+-.++++++++. .+.|+-|-+=+
T Consensus 6 i~pSil~ad~~~l~~~i~~l~~-~g~d~lHiDimDG~F-------------VPN~tfg~~~i~~lr~~~~~~~~dvHLMv 71 (223)
T PRK08745 6 IAPSILSADFARLGEEVDNVLK-AGADWVHFDVMDNHY-------------VPNLTIGPMVCQALRKHGITAPIDVHLMV 71 (223)
T ss_pred EEeehhhcCHHHHHHHHHHHHH-cCCCEEEEecccCcc-------------CCCcccCHHHHHHHHhhCCCCCEEEEecc
Confidence 4567777888888777777753 455654 4433431 12223335788999987 58888776543
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCC
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGA 517 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~ 517 (611)
. .-..+++.+.++|++.|++|.-... ++..+-+.+++...+ ...+.+-+. -+
T Consensus 72 ~------~P~~~i~~~~~~gad~I~~H~Ea~~----------~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~--~v 133 (223)
T PRK08745 72 E------PVDRIVPDFADAGATTISFHPEASR----------HVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLP--EL 133 (223)
T ss_pred C------CHHHHHHHHHHhCCCEEEEcccCcc----------cHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHh--hc
Confidence 1 2346789999999999999986421 111222223332221 111222222 35
Q ss_pred ceEEec---cccccccccCCccHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchH
Q psy9514 518 SLITLH---GRTREQRYTKQADWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIF 590 (611)
Q Consensus 518 ~~itih---grtr~g~~~~~a~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf 590 (611)
+.|++. ....-+.+.. ..++-++++.+. ..++.|-.-||| +.+.+.++.+.| +|.+++|+++...++.-
T Consensus 134 D~VlvMtV~PGf~GQ~fi~-~~l~KI~~l~~~~~~~~~~~~IeVDGGI-~~eti~~l~~aG--aDi~V~GSaiF~~~d~~ 209 (223)
T PRK08745 134 DLVLVMSVNPGFGGQAFIP-SALDKLRAIRKKIDALGKPIRLEIDGGV-KADNIGAIAAAG--ADTFVAGSAIFNAPDYA 209 (223)
T ss_pred CEEEEEEECCCCCCccccH-HHHHHHHHHHHHHHhcCCCeeEEEECCC-CHHHHHHHHHcC--CCEEEEChhhhCCCCHH
Confidence 555442 2222222211 123344443322 224567788999 599999999998 99999999988666643
No 240
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=96.09 E-value=0.033 Score=56.64 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=77.8
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc---CCCEEEEEEccccC-----CchHHHHHHHHHHH
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS---SLPITVKTRTGIHK-----DNNIIHNFMPKFRD 465 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~---~~PvtVKiR~g~~~-----~~~~a~~la~~l~~ 465 (611)
.|+|+|++-+ . +|...-.+...+.+.++.+.+.+ ++|+++-.-+...+ ..+.....++.+.+
T Consensus 88 ~GAd~vd~vi--------~--~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e 157 (236)
T PF01791_consen 88 LGADEVDVVI--------N--YGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAE 157 (236)
T ss_dssp TT-SEEEEEE--------E--HHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHH
T ss_pred cCCceeeeec--------c--ccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHH
Confidence 4999999842 1 12222233455566666666554 56777662221100 01134667777889
Q ss_pred cCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHh
Q psy9514 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545 (611)
Q Consensus 466 aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k 545 (611)
.|+|+|-+.-... . .....+...++++..
T Consensus 158 ~GaD~vKt~tg~~--~-------------------------------------------------~~t~~~~~~~~~~~~ 186 (236)
T PF01791_consen 158 LGADFVKTSTGKP--V-------------------------------------------------GATPEDVELMRKAVE 186 (236)
T ss_dssp TT-SEEEEE-SSS--S-------------------------------------------------CSHHHHHHHHHHHHH
T ss_pred hCCCEEEecCCcc--c-------------------------------------------------cccHHHHHHHHHHHH
Confidence 9999987654310 0 111123455556555
Q ss_pred hCCCCc----EEEecCC------CCHHHHHHHHHcCCCc--cEEEEcHHhhh
Q psy9514 546 LCSPAP----LYGNGDI------LSYEDYTESLKKSPSI--SGVMIGRGALI 585 (611)
Q Consensus 546 ~~~~iP----VIgnGgI------~s~eda~~~l~~G~~a--D~VmIGRgaL~ 585 (611)
.. ++| |...||| .+.+++.++++.| + -|++.||.++.
T Consensus 187 ~~-~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aG--a~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 187 AA-PVPGKVGVKASGGIDAEDFLRTLEDALEFIEAG--ADRIGTSSGRNIWQ 235 (236)
T ss_dssp TH-SSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTT--HSEEEEEEHHHHHT
T ss_pred hc-CCCcceEEEEeCCCChHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHc
Confidence 43 678 9999999 9999999999998 8 99999998753
No 241
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.08 E-value=0.035 Score=59.25 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=92.5
Q ss_pred EEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc---------------ccceeeecccC--
Q psy9514 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---------------ANLFGVQLCGN-- 378 (611)
Q Consensus 316 ~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~---------------~~~~ivQi~g~-- 378 (611)
+++||+|++|+.+.++++.+.+ .++++||||+|||.+.....+.+++|+.+ +.++.+-+...
T Consensus 67 ~~vQl~g~~~~~~~~aa~~~~~-~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~ 145 (321)
T PRK10415 67 RTVQIAGSDPKEMADAARINVE-SGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA 145 (321)
T ss_pred EEEEEeCCCHHHHHHHHHHHHH-CCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc
Confidence 6899999999999999987755 57899999999999887777777766543 23555555332
Q ss_pred -chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHH
Q psy9514 379 -NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIH 457 (611)
Q Consensus 379 -~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~ 457 (611)
+...+.+.++.+. ..|+|+|.+|..- ....|.+.. + .++++.+++.+++||+.- | +.....
T Consensus 146 ~~~~~~~~~a~~le-~~G~d~i~vh~rt-----~~~~~~G~a--~----~~~i~~ik~~~~iPVI~n---G---gI~s~~ 207 (321)
T PRK10415 146 PEHRNCVEIAQLAE-DCGIQALTIHGRT-----RACLFNGEA--E----YDSIRAVKQKVSIPVIAN---G---DITDPL 207 (321)
T ss_pred CCcchHHHHHHHHH-HhCCCEEEEecCc-----cccccCCCc--C----hHHHHHHHHhcCCcEEEe---C---CCCCHH
Confidence 2235667776664 4699999998532 112222211 2 256677777778887663 2 222333
Q ss_pred HHHHHHHHcCCCEEEE
Q psy9514 458 NFMPKFRDWGASLITL 473 (611)
Q Consensus 458 ~la~~l~~aGvd~Itv 473 (611)
.+.+.++..|+|+|.+
T Consensus 208 da~~~l~~~gadgVmi 223 (321)
T PRK10415 208 KARAVLDYTGADALMI 223 (321)
T ss_pred HHHHHHhccCCCEEEE
Confidence 4455566689998865
No 242
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=96.08 E-value=0.14 Score=51.56 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=86.2
Q ss_pred HHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch---h--h
Q psy9514 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN---I--I 505 (611)
Q Consensus 431 ~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~---~--~ 505 (611)
+.+...-+.|+.|- +. ++...+.|+|.|||-.... .+.+...++..... . .
T Consensus 58 ~~lc~~~~v~liIN------d~-------~dlA~~~~AdGVHlGq~D~-----------~~~~ar~~~~~~~iIG~S~h~ 113 (211)
T COG0352 58 RALCQKYGVPLIIN------DR-------VDLALAVGADGVHLGQDDM-----------PLAEARELLGPGLIIGLSTHD 113 (211)
T ss_pred HHHHHHhCCeEEec------Cc-------HHHHHhCCCCEEEcCCccc-----------chHHHHHhcCCCCEEEeecCC
Confidence 33444457888874 22 1223478899888754421 12333334333211 1 2
Q ss_pred hhcchhhHhcCCceEEeccc----cccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 506 HNFMPKFRDWGASLITLHGR----TREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 506 ~~~~~~l~~~G~~~itihgr----tr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.+.+......|+++|.+... |+.+. .+..++.++.+.. ...+|+++-||| +++.+.++++.| +|+|.+-|
T Consensus 114 ~eea~~A~~~g~DYv~~GpifpT~tK~~~--~~~G~~~l~~~~~-~~~iP~vAIGGi-~~~nv~~v~~~G--a~gVAvvs 187 (211)
T COG0352 114 LEEALEAEELGADYVGLGPIFPTSTKPDA--PPLGLEGLREIRE-LVNIPVVAIGGI-NLENVPEVLEAG--ADGVAVVS 187 (211)
T ss_pred HHHHHHHHhcCCCEEEECCcCCCCCCCCC--CccCHHHHHHHHH-hCCCCEEEEcCC-CHHHHHHHHHhC--CCeEEehh
Confidence 23344566678999966333 33322 5557888887655 456999999999 699999999998 99999999
Q ss_pred HhhhCCchHHHHHc
Q psy9514 582 GALIKPWIFQEIKE 595 (611)
Q Consensus 582 gaL~dP~lf~ei~~ 595 (611)
+++..++....+++
T Consensus 188 ai~~a~d~~~a~~~ 201 (211)
T COG0352 188 AITSAADPAAAAKA 201 (211)
T ss_pred HhhcCCCHHHHHHH
Confidence 99988776655543
No 243
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.05 E-value=0.038 Score=55.90 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=48.1
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHc-CCCccEEEEcHHhhhCCchHHHHH
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKK-SPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~-G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.+++.|.++++. +||..-|||+|.+|+++++.. . ++|-|+||..++.+|.+++++.
T Consensus 65 ~~n~~~i~~i~~~---~~v~vgGGirs~e~~~~~~~~l~-~a~rvvigT~a~~~p~~l~~~~ 122 (221)
T TIGR00734 65 GDNFSLLSKLSKR---VELIADCGVRSPEDLETLPFTLE-FASRVVVATETLDITELLRECY 122 (221)
T ss_pred cchHHHHHHHHhh---CcEEEcCccCCHHHHHHHHhhhc-cceEEeecChhhCCHHHHHHhh
Confidence 3467788888775 489999999999999999762 2 3999999999999999999885
No 244
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=96.04 E-value=0.96 Score=46.42 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCC-CccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccc----cC
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGC-PIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGI----HK 451 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gC-P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~----~~ 451 (611)
++..+.+.++.+.+ .|+++|-|.-+. | .+....|+..+-.++...+.|++++++.. .++.|--|+.. ..
T Consensus 82 ~~~~~~~~v~~~~~-~G~~gv~iED~~~~---k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 82 NALNVARTVRELEE-AGAAGIHIEDQVGP---KKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CHHHHHHHHHHHHH-cCCEEEEEecCCCC---ccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 45677777777654 799999994433 2 22222344445566666677777776664 47888888422 13
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
..+++++-+++..++|+|+|-+++-
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 4577888899999999999988764
No 245
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.32 Score=49.01 Aligned_cols=190 Identities=17% Similarity=0.213 Sum_probs=112.7
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~ 447 (611)
.+..+|.+.+...+.+-.+.+. .+|+|.| |+-=|+= ..+..+=..++++++.....|+.|-+=+
T Consensus 5 ~iapSILsaD~~~l~~el~~~~-~agad~iH~DVMDghF-------------VPNiTfGp~~v~~l~~~t~~p~DvHLMV 70 (220)
T COG0036 5 KIAPSILSADFARLGEELKALE-AAGADLIHIDVMDGHF-------------VPNITFGPPVVKALRKITDLPLDVHLMV 70 (220)
T ss_pred eeeeehhhCCHhHHHHHHHHHH-HcCCCEEEEeccCCCc-------------CCCcccCHHHHHHHhhcCCCceEEEEec
Confidence 4556777777777777777765 3577775 3333432 2222333678899999878888887543
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCC
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGA 517 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~ 517 (611)
.....+++.+.++|++.|++|.=... .+....+++++...+ .+.+.+-+.+ +
T Consensus 71 ------~~p~~~i~~fa~agad~It~H~E~~~----------~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~--v 132 (220)
T COG0036 71 ------ENPDRYIEAFAKAGADIITFHAEATE----------HIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDD--V 132 (220)
T ss_pred ------CCHHHHHHHHHHhCCCEEEEEeccCc----------CHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhh--C
Confidence 22358899999999999999975211 112222233332111 1112222332 4
Q ss_pred ceEEe---ccccccccccCCccHHHHHHHHhhCC---CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHH
Q psy9514 518 SLITL---HGRTREQRYTKQADWDYIEKCAQLCS---PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQ 591 (611)
Q Consensus 518 ~~iti---hgrtr~g~~~~~a~~~~i~~~~k~~~---~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ 591 (611)
+.|++ .....-+.+. +.-.+-++++.+... ++-|-.=||| +.+.+.++.+.| +|.+++|+++..++|+-.
T Consensus 133 D~VllMsVnPGfgGQ~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AG--ad~~VaGSalF~~~d~~~ 208 (220)
T COG0036 133 DLVLLMSVNPGFGGQKFI-PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAG--ADVFVAGSALFGADDYKA 208 (220)
T ss_pred CEEEEEeECCCCcccccC-HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcC--CCEEEEEEEEeCCccHHH
Confidence 45533 3322222221 122344454443332 3445578888 699999999998 999999999999998666
Q ss_pred HHHc
Q psy9514 592 EIKE 595 (611)
Q Consensus 592 ei~~ 595 (611)
.|+.
T Consensus 209 ~i~~ 212 (220)
T COG0036 209 TIRE 212 (220)
T ss_pred HHHH
Confidence 6544
No 246
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.84 E-value=0.25 Score=53.32 Aligned_cols=78 Identities=21% Similarity=0.159 Sum_probs=56.6
Q ss_pred hhhHhcCCceEEeccccccc--cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 510 PKFRDWGASLITLHGRTREQ--RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 510 ~~l~~~G~~~itihgrtr~g--~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
....+.|+++|.+....... ....+..++++..+++. .++|||+-|||+ ++++.+++..| +|+|+++++++..+
T Consensus 254 ~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~-~~iPv~AiGGI~-~~ni~~l~~~G--a~gVAvisaI~~a~ 329 (347)
T PRK02615 254 AKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE-APIPWFAIGGID-KSNIPEVLQAG--AKRVAVVRAIMGAE 329 (347)
T ss_pred HHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCCC-HHHHHHHHHcC--CcEEEEeHHHhCCC
Confidence 34456799999763332221 11234568888887765 479999999994 99999999987 99999999998755
Q ss_pred chHH
Q psy9514 588 WIFQ 591 (611)
Q Consensus 588 ~lf~ 591 (611)
+...
T Consensus 330 dp~~ 333 (347)
T PRK02615 330 DPKQ 333 (347)
T ss_pred CHHH
Confidence 5433
No 247
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=95.84 E-value=0.12 Score=50.22 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=65.0
Q ss_pred HHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch---hh--hhcchhhHhcCCceEEecccccc---ccccC
Q psy9514 462 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN---II--HNFMPKFRDWGASLITLHGRTRE---QRYTK 533 (611)
Q Consensus 462 ~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~---~~--~~~~~~l~~~G~~~itihgrtr~---g~~~~ 533 (611)
.+.+.|++.||+....... .+...++..... .. .+.+..+.+.|++++.+..-... ..+ .
T Consensus 67 la~~~~~dGvHl~~~~~~~-----------~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~-~ 134 (180)
T PF02581_consen 67 LALELGADGVHLGQSDLPP-----------AEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPVFPTSSKPGA-P 134 (180)
T ss_dssp HHHHCT-SEEEEBTTSSSH-----------HHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETSS--SSSSS--T
T ss_pred HHHhcCCCEEEecccccch-----------HHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCccCCCCCccc-c
Confidence 4556899999987753211 112222211111 01 12255666789999987554222 112 5
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
+..|+.+.++.+.. ++||++-||| +++++.++++.| +++|.+-+++
T Consensus 135 ~~g~~~l~~~~~~~-~~pv~AlGGI-~~~~i~~l~~~G--a~gvAvi~aI 180 (180)
T PF02581_consen 135 PLGLDGLREIARAS-PIPVYALGGI-TPENIPELREAG--ADGVAVISAI 180 (180)
T ss_dssp TCHHHHHHHHHHHT-SSCEEEESS---TTTHHHHHHTT---SEEEESHHH
T ss_pred ccCHHHHHHHHHhC-CCCEEEEcCC-CHHHHHHHHHcC--CCEEEEEeeC
Confidence 55788888887764 7999999999 799999999987 9999998764
No 248
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=95.81 E-value=0.15 Score=51.87 Aligned_cols=48 Identities=6% Similarity=0.203 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
.++++.+++. +.++..-+.+. |-..+....++.+.++|++++|+|+-.
T Consensus 43 ~~~i~~l~~~-~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~a 90 (230)
T PRK00230 43 PQFVRELKQR-GFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHASG 90 (230)
T ss_pred HHHHHHHHhc-CCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEcccC
Confidence 3556777765 44555544442 222344567788899999999999854
No 249
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=95.81 E-value=0.44 Score=50.01 Aligned_cols=70 Identities=16% Similarity=0.279 Sum_probs=53.6
Q ss_pred hHhcCCceEEe-----ccccccccccCCccHHHHHHHHhhCCCCcEEEec--CCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 512 FRDWGASLITL-----HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG--DILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 512 l~~~G~~~iti-----hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnG--gI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.++.|+|++.+ ||- .. ..+..+++.++++.+. .++|+++-| || +.+++.+++..| ++.|-|.+++.
T Consensus 162 ~~~tg~DyLAvaiG~~hg~-~~--~~~~l~~~~L~~i~~~-~~iPlV~hG~SGI-~~e~~~~~i~~G--~~kinv~T~i~ 234 (281)
T PRK06806 162 AEETDVDALAVAIGNAHGM-YN--GDPNLRFDRLQEINDV-VHIPLVLHGGSGI-SPEDFKKCIQHG--IRKINVATATF 234 (281)
T ss_pred HHhhCCCEEEEccCCCCCC-CC--CCCccCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcC--CcEEEEhHHHH
Confidence 34457777744 552 21 2344588999998776 589999999 98 689999999998 99999999999
Q ss_pred hCCc
Q psy9514 585 IKPW 588 (611)
Q Consensus 585 ~dP~ 588 (611)
.+|.
T Consensus 235 ~a~~ 238 (281)
T PRK06806 235 NSVI 238 (281)
T ss_pred HHHH
Confidence 8653
No 250
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=95.74 E-value=0.059 Score=66.90 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc
Q psy9514 422 RANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR 500 (611)
Q Consensus 422 r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~ 500 (611)
.++-+.++|..++.+. +.||.||+-.+. ... .++.-+.++|+|.|+|+|...... -+-|..+.
T Consensus 979 SieDL~qlI~~Lk~~~~~~~I~VKl~a~~--~vg---~ia~gvaka~aD~I~IdG~~GGTG---Aap~~~~~-------- 1042 (1485)
T PRK11750 979 SIEDLAQLIFDLKQVNPKALVSVKLVSEP--GVG---TIATGVAKAYADLITISGYDGGTG---ASPLTSVK-------- 1042 (1485)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEEccCC--Ccc---HHHhChhhcCCCEEEEeCCCCCcc---cccHHHHh--------
Confidence 4667888889999887 579999987431 111 244456789999999999754322 11111000
Q ss_pred CchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHH----hh--CCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA----QL--CSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 501 ~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~----k~--~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
+.+.+.-.-++++- +. -..|.+++.|++.|+.|+..++..| |
T Consensus 1043 ------------------------------~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~t~~Dv~kA~aLG--A 1090 (1485)
T PRK11750 1043 ------------------------------YAGSPWELGLAETHQALVANGLRHKIRLQVDGGLKTGLDVIKAAILG--A 1090 (1485)
T ss_pred ------------------------------hCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcCCHHHHHHHHHcC--C
Confidence 22332111132221 11 1358999999999999999999998 9
Q ss_pred cEEEEcHHhhh
Q psy9514 575 SGVMIGRGALI 585 (611)
Q Consensus 575 D~VmIGRgaL~ 585 (611)
|.|.+||++|.
T Consensus 1091 d~~~~gt~~li 1101 (1485)
T PRK11750 1091 ESFGFGTGPMV 1101 (1485)
T ss_pred cccccchHHHH
Confidence 99999999986
No 251
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=95.71 E-value=0.71 Score=47.51 Aligned_cols=177 Identities=12% Similarity=0.157 Sum_probs=107.3
Q ss_pred eecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC-
Q psy9514 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK- 451 (611)
Q Consensus 373 vQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~- 451 (611)
+.++..+++.+..|. ..|.|-|||+.+=. .| .|.-.... ++.+++.+++||.|-||.-..+
T Consensus 4 lEvcv~s~~~a~~A~-----~~GAdRiELc~~L~--------~G-GlTPS~g~----i~~~~~~~~ipv~vMIRPR~gdF 65 (248)
T PRK11572 4 LEICCYSMECALTAQ-----QAGADRIELCAAPK--------EG-GLTPSLGV----LKSVRERVTIPVHPIIRPRGGDF 65 (248)
T ss_pred EEEEECCHHHHHHHH-----HcCCCEEEEccCcC--------CC-CcCCCHHH----HHHHHHhcCCCeEEEEecCCCCC
Confidence 677888888887774 34999999964211 11 12222333 3444556689999999974222
Q ss_pred -----CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh----------hhcchhhHhcC
Q psy9514 452 -----DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII----------HNFMPKFRDWG 516 (611)
Q Consensus 452 -----~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~----------~~~~~~l~~~G 516 (611)
.......-++.+.+.|++.|.+-.=+.. ..-|.+....+.++.....-.. ......+.+.|
T Consensus 66 ~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~d----g~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG 141 (248)
T PRK11572 66 CYSDGEFAAMLEDIATVRELGFPGLVTGVLDVD----GHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG 141 (248)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCC----CCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC
Confidence 1234556677788999999876432211 1236666666666554322221 12345677889
Q ss_pred CceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEE
Q psy9514 517 ASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578 (611)
Q Consensus 517 ~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~Vm 578 (611)
++.|.-+|.... -....+.++++++.....-|+..||| +++.+.+++..| +..|=
T Consensus 142 ~~rILTSGg~~~----a~~g~~~L~~lv~~a~~~~Im~GgGV-~~~Nv~~l~~tG--~~~~H 196 (248)
T PRK11572 142 VARILTSGQQQD----AEQGLSLIMELIAASDGPIIMAGAGV-RLSNLHKFLDAG--VREVH 196 (248)
T ss_pred CCEEECCCCCCC----HHHHHHHHHHHHHhcCCCEEEeCCCC-CHHHHHHHHHcC--CCEEe
Confidence 998876664332 11245667777766555447777888 588888887654 66553
No 252
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=95.61 E-value=0.32 Score=48.57 Aligned_cols=178 Identities=15% Similarity=0.216 Sum_probs=100.7
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+..++...+...+.+..+.+++ .|+|.| |+-=|+=.+| -++ -.++++++++....|+-|-+=+.
T Consensus 2 I~pSil~ad~~~l~~~i~~l~~-~g~d~lHiDiMDg~fvpn---~~~----------g~~~i~~i~~~~~~~~DvHLMv~ 67 (201)
T PF00834_consen 2 ISPSILSADFLNLEEEIKRLEE-AGADWLHIDIMDGHFVPN---LTF----------GPDIIKAIRKITDLPLDVHLMVE 67 (201)
T ss_dssp EEEBGGGS-GGGHHHHHHHHHH-TT-SEEEEEEEBSSSSSS---B-B-----------HHHHHHHHTTSSSEEEEEEESS
T ss_pred eehhhhhCCHHHHHHHHHHHHH-cCCCEEEEeecccccCCc---ccC----------CHHHHHHHhhcCCCcEEEEeeec
Confidence 4456777777778888887753 455553 4433442111 122 35778889888888988886322
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCCc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGAS 518 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~~ 518 (611)
+ + ..+++.+.++|++.|++|--.... +.++-+.+++...+ ...+.+-+. -++
T Consensus 68 ---~-P--~~~i~~~~~~g~~~i~~H~E~~~~----------~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~--~vD 129 (201)
T PF00834_consen 68 ---N-P--ERYIEEFAEAGADYITFHAEATED----------PKETIKYIKEAGIKAGIALNPETPVEELEPYLD--QVD 129 (201)
T ss_dssp ---S-G--GGHHHHHHHHT-SEEEEEGGGTTT----------HHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGC--CSS
T ss_pred ---c-H--HHHHHHHHhcCCCEEEEcccchhC----------HHHHHHHHHHhCCCEEEEEECCCCchHHHHHhh--hcC
Confidence 1 2 368889999999999999875332 11222222221111 111222221 366
Q ss_pred eEEeccccccccccCCc----cHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 519 LITLHGRTREQRYTKQA----DWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a----~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.|++..... ++.+.. .++-|+++.+. ..++.|..=||| +.+.+..+.+.| ||.+++|++++.
T Consensus 130 ~VlvMsV~P--G~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI-~~~~~~~~~~aG--ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 130 MVLVMSVEP--GFGGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI-NEENIKQLVEAG--ADIFVAGSAIFK 199 (201)
T ss_dssp EEEEESS-T--TTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE-STTTHHHHHHHT----EEEESHHHHT
T ss_pred EEEEEEecC--CCCcccccHHHHHHHHHHHHHHHhcCCceEEEEECCC-CHHHHHHHHHcC--CCEEEECHHHhC
Confidence 665544322 233333 33444444322 235788899999 578999999998 999999998764
No 253
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=95.60 E-value=0.14 Score=51.09 Aligned_cols=143 Identities=12% Similarity=0.039 Sum_probs=77.6
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch---
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN--- 503 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~--- 503 (611)
.++++.+++...+++-+|+= +-..+...+++.+.++|+|+|++|.-.... .+..+.+.+++...
T Consensus 44 ~~~v~~ir~~~~i~~D~k~~----di~~~~~~~~~~~~~~gad~vtvh~e~g~~---------~l~~~i~~~~~~g~~~~ 110 (215)
T PRK13813 44 LGIIEELKRYAPVIADLKVA----DIPNTNRLICEAVFEAGAWGIIVHGFTGRD---------SLKAVVEAAAESGGKVF 110 (215)
T ss_pred HHHHHHHHhcCCEEEEeecc----ccHHHHHHHHHHHHhCCCCEEEEcCcCCHH---------HHHHHHHHHHhcCCeEE
Confidence 36777887766555556642 111233445577888999999999875321 11222222221111
Q ss_pred ----------------hhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHH
Q psy9514 504 ----------------IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTE 566 (611)
Q Consensus 504 ----------------~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~ 566 (611)
....++....++|++...+ .....+.+.++.+....-..|..|+|..- ..+.+
T Consensus 111 v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~----------~~~~~~~i~~l~~~~~~~~~ivdgGI~~~g~~~~~ 180 (215)
T PRK13813 111 VVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVA----------PATRPERVRYIRSRLGDELKIISPGIGAQGGKAAD 180 (215)
T ss_pred EEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEE----------CCCcchhHHHHHHhcCCCcEEEeCCcCCCCCCHHH
Confidence 1112233344556554332 11123444444433322113466888753 24778
Q ss_pred HHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 567 SLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 567 ~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+++.| +|.+++||+++..++.-+.++
T Consensus 181 ~~~aG--ad~iV~Gr~I~~~~d~~~~~~ 206 (215)
T PRK13813 181 AIKAG--ADYVIVGRSIYNAADPREAAK 206 (215)
T ss_pred HHHcC--CCEEEECcccCCCCCHHHHHH
Confidence 88887 999999999988777544443
No 254
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=95.51 E-value=0.13 Score=57.46 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=87.4
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh---
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI--- 504 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~--- 504 (611)
+-++.++..+.+||..| |-.-+- .-+.....+|+|+|-+..+.-.+. .+.++.+...+....
T Consensus 100 ~~l~~vr~~v~~PvLrK------DFiid~-~QI~ea~~~GADavLLI~~~L~~~--------~l~~l~~~a~~lGl~~lv 164 (454)
T PRK09427 100 DFLPIVRAIVTQPILCK------DFIIDP-YQIYLARYYGADAILLMLSVLDDE--------QYRQLAAVAHSLNMGVLT 164 (454)
T ss_pred HHHHHHHHhCCCCEEec------cccCCH-HHHHHHHHcCCCchhHHHHhCCHH--------HHHHHHHHHHHcCCcEEE
Confidence 45577788888898877 211111 112234466888877776653321 122222222222111
Q ss_pred -h--hhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 505 -I--HNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 505 -~--~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
. ..-+....++|++.|-+.-|.-. +-..+.....++++..+ ++.+|+.+||.|++|+..+. .+ +|+|.||
T Consensus 165 Evh~~~El~~al~~~a~iiGiNnRdL~---t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~-~~--~davLiG 238 (454)
T PRK09427 165 EVSNEEELERAIALGAKVIGINNRNLR---DLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELS-PF--ANGFLIG 238 (454)
T ss_pred EECCHHHHHHHHhCCCCEEEEeCCCCc---cceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHH-hc--CCEEEEC
Confidence 1 11233445667777766655443 22334555555555443 56789999999999999864 45 9999999
Q ss_pred HHhhhCCchHHHHHc
Q psy9514 581 RGALIKPWIFQEIKE 595 (611)
Q Consensus 581 RgaL~dP~lf~ei~~ 595 (611)
.+++..|+....+++
T Consensus 239 ~~lm~~~d~~~~~~~ 253 (454)
T PRK09427 239 SSLMAEDDLELAVRK 253 (454)
T ss_pred HHHcCCCCHHHHHHH
Confidence 999999987666544
No 255
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.44 E-value=0.021 Score=57.90 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCch
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
..+.++++...++|+|-.|||+|.+.+.++++.| ||.|++|..+..||++
T Consensus 171 ~~v~~~~~~~~~~~LivGGGIrs~e~A~~~~~aG--AD~IVvGn~iee~~~~ 220 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLIVGGGIRSPEQAREMAEAG--ADTIVVGNAIEEDPDL 220 (230)
T ss_dssp HHHHHHHHHSSSSEEEEESS--SHHHHHHHHCTT--SSEEEESCHHHHHH-H
T ss_pred HHHHHHHHhcCCccEEEeCCcCCHHHHHHHHHCC--CCEEEECCEEEEcchH
Confidence 4455566777899999999999999999999998 9999999999999983
No 256
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=95.40 E-value=0.37 Score=52.34 Aligned_cols=78 Identities=5% Similarity=-0.044 Sum_probs=52.5
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++.+.+.++.+. ..||+.|-|..+-+ ..++...+.+++|++.+|..+.+.+-....-+.+.+.+
T Consensus 143 ~~~~~~~~a~~~~-~~Gf~~~Kik~~~~--------------~~~~~di~~i~~vR~~~G~~~~l~vDan~~~~~~~A~~ 207 (368)
T cd03329 143 SPEAYADFAEECK-ALGYRAIKLHPWGP--------------GVVRRDLKACLAVREAVGPDMRLMHDGAHWYSRADALR 207 (368)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEEecCCc--------------hhHHHHHHHHHHHHHHhCCCCeEEEECCCCcCHHHHHH
Confidence 7777777777664 35999998853211 11455678999999988755444444332224578899
Q ss_pred HHHHHHHcCCCEE
Q psy9514 459 FMPKFRDWGASLI 471 (611)
Q Consensus 459 la~~l~~aGvd~I 471 (611)
++++|++.++.++
T Consensus 208 ~~~~l~~~~l~~i 220 (368)
T cd03329 208 LGRALEELGFFWY 220 (368)
T ss_pred HHHHhhhcCCCeE
Confidence 9999998876654
No 257
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=95.34 E-value=0.04 Score=59.10 Aligned_cols=139 Identities=12% Similarity=0.145 Sum_probs=77.8
Q ss_pred cChHHHHHHHHHHHhh--------cCCCEEEEEEcc-----ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcC
Q psy9514 421 QRANILQSVITCMNEV--------SSLPITVKTRTG-----IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487 (611)
Q Consensus 421 ~r~~~l~eIv~av~~~--------~~~PvtVKiR~g-----~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~ad 487 (611)
++|+.+.+..+.+.+. +|.|.+- +|.+ ...+...+.++++.+.+.=.-.|++.-|..... .
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~-v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~---~-- 147 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDR-VQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDD---Q-- 147 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHH-ccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCC---C--
Confidence 4666666666555442 1455532 2321 112445677788877654223466665542111 0
Q ss_pred hhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccc-cccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHH
Q psy9514 488 WDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTR-EQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566 (611)
Q Consensus 488 w~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr-~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~ 566 (611)
.......++++.+.++|++.|++|+||+ .++|.+..+. .+| -..++.+.+
T Consensus 148 ------------~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~-----------~~~------~~~~~~i~~ 198 (333)
T PRK11815 148 ------------DSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKENR-----------EIP------PLDYDRVYR 198 (333)
T ss_pred ------------cCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccccc-----------cCC------CcCHHHHHH
Confidence 0112345678889999999999999987 3444432211 111 124666666
Q ss_pred HHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 567 SLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 567 ~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
+.+.. .+.-+||-|=+.+|.-+.++.++
T Consensus 199 v~~~~--~~iPVI~nGgI~s~eda~~~l~~ 226 (333)
T PRK11815 199 LKRDF--PHLTIEINGGIKTLEEAKEHLQH 226 (333)
T ss_pred HHHhC--CCCeEEEECCcCCHHHHHHHHhc
Confidence 55542 24556777778888888777764
No 258
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=95.33 E-value=0.43 Score=48.21 Aligned_cols=112 Identities=14% Similarity=0.115 Sum_probs=75.7
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE--ccccCCchHHHHHHHHHHHcCCCEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR--TGIHKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR--~g~~~~~~~a~~la~~l~~aGvd~I 471 (611)
.|.|.||+ +.+ +|..+-.+.+.+.+-|++|+++++-++.+|+- ++.-.+ +...+.++...++|+|+|
T Consensus 89 ~GAdEiDm--------Vin--ig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~-ee~~~A~~i~~~aGAdFV 157 (228)
T COG0274 89 NGADEIDM--------VIN--IGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTD-EEKRKACEIAIEAGADFV 157 (228)
T ss_pred cCCCeeee--------eee--HHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCH-HHHHHHHHHHHHhCCCEE
Confidence 48999987 322 35556678999999999999998654555544 343222 334667777889999998
Q ss_pred EEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH---HHHHHHHhhCC
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW---DYIEKCAQLCS 548 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~---~~i~~~~k~~~ 548 (611)
--+-+. ..+.+-. ..+.+.+ ..
T Consensus 158 KTSTGf-----------------------------------------------------~~~gAT~edv~lM~~~v--g~ 182 (228)
T COG0274 158 KTSTGF-----------------------------------------------------SAGGATVEDVKLMKETV--GG 182 (228)
T ss_pred EcCCCC-----------------------------------------------------CCCCCCHHHHHHHHHHh--cc
Confidence 654432 1122222 3333332 23
Q ss_pred CCcEEEecCCCCHHHHHHHHHcC
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKS 571 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G 571 (611)
.+-|=+.|||+|++|+..+++.|
T Consensus 183 ~vgvKaSGGIrt~eda~~~i~ag 205 (228)
T COG0274 183 RVGVKASGGIRTAEDAKAMIEAG 205 (228)
T ss_pred CceeeccCCcCCHHHHHHHHHHh
Confidence 68889999999999999999987
No 259
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=95.31 E-value=0.12 Score=57.72 Aligned_cols=131 Identities=19% Similarity=0.119 Sum_probs=84.2
Q ss_pred cceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHH-HHHcCCCEEEE
Q psy9514 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITL 473 (611)
Q Consensus 396 ~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~-l~~aGvd~Itv 473 (611)
..++++..-+|+.-. ..++-+.+.|..++++.+ .+|+||+-.+.. ...+.. +.++++|.|+|
T Consensus 270 ~pG~~~ISP~pHHDi----------ysieDLaqlI~dLk~~~~~~~I~VKlva~~~------v~~iaagvakA~AD~I~I 333 (485)
T COG0069 270 PPGVGLISPPPHHDI----------YSIEDLAQLIKDLKEANPWAKISVKLVAEHG------VGTIAAGVAKAGADVITI 333 (485)
T ss_pred CCCCCCcCCCCcccc----------cCHHHHHHHHHHHHhcCCCCeEEEEEecccc------hHHHHhhhhhccCCEEEE
Confidence 445566555564333 246778899999999874 679999875421 122333 78999999999
Q ss_pred EccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHh---hC---
Q psy9514 474 HGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ---LC--- 547 (611)
Q Consensus 474 hgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k---~~--- 547 (611)
+|-... |.-+-|..+ . +.+.+....+++..+ ..
T Consensus 334 dG~~GG---TGAsP~~~~---------------------~-----------------~~GiP~e~glae~~q~L~~~glR 372 (485)
T COG0069 334 DGADGG---TGASPLTSI---------------------D-----------------HAGIPWELGLAETHQTLVLNGLR 372 (485)
T ss_pred cCCCCc---CCCCcHhHh---------------------h-----------------cCCchHHHHHHHHHHHHHHcCCc
Confidence 985422 122222211 0 233332222332221 11
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
..+-|++.|++.|..|+..++..| +|.|-+|+++|+
T Consensus 373 d~v~l~~~Ggl~Tg~DVaka~aLG--Ad~v~~gTa~li 408 (485)
T COG0069 373 DKVKLIADGGLRTGADVAKAAALG--ADAVGFGTAALV 408 (485)
T ss_pred ceeEEEecCCccCHHHHHHHHHhC--cchhhhchHHHH
Confidence 257789999999999999999998 999999999986
No 260
>KOG2550|consensus
Probab=95.29 E-value=0.033 Score=60.17 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh---------hhcchhhHhcCCceEEeccc---
Q psy9514 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII---------HNFMPKFRDWGASLITLHGR--- 525 (611)
Q Consensus 458 ~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~---------~~~~~~l~~~G~~~itihgr--- 525 (611)
.-...|.++|+++|.+.--.... .|--++...++...... .+.+..|-++|++.+-+.=.
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS--------~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNS--------IYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGS 325 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcc--------hhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEeccccCc
Confidence 34557889999999886532211 12234444455544432 25666788899998855211
Q ss_pred ---ccc----ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 526 ---TRE----QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 526 ---tr~----g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
|.+ |+-.+.+- -.+++.+.. ..+|||+-|||.+.-++.+++..| ++.||+| ++|+-
T Consensus 326 iCiTqevma~GrpQ~TAV-y~va~~A~q-~gvpviADGGiq~~Ghi~KAl~lG--AstVMmG-~lLAg 388 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAV-YKVAEFANQ-FGVPCIADGGIQNVGHVVKALGLG--ASTVMMG-GLLAG 388 (503)
T ss_pred eeeeceeeeccCCcccch-hhHHHHHHh-cCCceeecCCcCccchhHhhhhcC--chhheec-ceeee
Confidence 111 22222222 223444444 389999999999999999999998 9999999 77763
No 261
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.28 E-value=0.16 Score=54.33 Aligned_cols=40 Identities=15% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.++++.+..+++||++ |.+.|.+++..+++.| +|+|.+|
T Consensus 124 ~~i~~ik~~~p~v~Vi~-G~v~t~~~A~~l~~aG--aD~I~vg 163 (325)
T cd00381 124 EMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAG--ADGVKVG 163 (325)
T ss_pred HHHHHHHHHCCCceEEE-CCCCCHHHHHHHHhcC--CCEEEEC
Confidence 45666555544588887 9999999999999987 9999984
No 262
>PRK14057 epimerase; Provisional
Probab=95.23 E-value=1.1 Score=46.29 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=103.3
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~ 447 (611)
++..++...+...+.+-.+.+++ .|+|.| |+-=|+= ..+..+-..++++++. ..|+-|-+=+
T Consensus 21 ~IspSil~aD~~~L~~el~~l~~-~g~d~lHiDVMDG~F-------------VPNitfGp~~i~~i~~--~~p~DvHLMV 84 (254)
T PRK14057 21 PLSVGILAGQWIALHRYLQQLEA-LNQPLLHLDLMDGQF-------------CPQFTVGPWAVGQLPQ--TFIKDVHLMV 84 (254)
T ss_pred ceEeehhhcCHHHHHHHHHHHHH-CCCCEEEEeccCCcc-------------CCccccCHHHHHHhcc--CCCeeEEeee
Confidence 45667788888888888888753 456654 4433331 1122222456666655 4666555332
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHh------------hhcccCchhhhhcchhhHhc
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCA------------QLCSRDNNIIHNFMPKFRDW 515 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~------------~~~~~~~~~~~~~~~~l~~~ 515 (611)
. .-..+++.+.++|++.|++|.-....- .....+|.+.. .+.=.-......+.+-+.
T Consensus 85 ~------~P~~~i~~~~~aGad~It~H~Ea~~~~---~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~-- 153 (254)
T PRK14057 85 A------DQWTAAQACVKAGAHCITLQAEGDIHL---HHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILS-- 153 (254)
T ss_pred C------CHHHHHHHHHHhCCCEEEEeeccccCH---HHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHH--
Confidence 1 234788999999999999998632110 00011122110 000000001122222332
Q ss_pred CCceEEeccccccccccCCc----cHHHHHHHHh---hC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 516 GASLITLHGRTREQRYTKQA----DWDYIEKCAQ---LC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 516 G~~~itihgrtr~g~~~~~a----~~~~i~~~~k---~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
-++.|++..- ++++.++. .++-|+++.+ .. .++-|-.=||| +.+.+.++.+.| ||.+++|+++..++
T Consensus 154 ~vD~VLvMtV--~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aG--ad~~V~GSalF~~~ 228 (254)
T PRK14057 154 DVEVIQLLAV--NPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL-TQDQLPSLIAQG--IDRVVSGSALFRDD 228 (254)
T ss_pred hCCEEEEEEE--CCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCC--CCEEEEChHhhCCC
Confidence 2555543221 11122322 2233443322 21 24567788999 688999999998 99999999988777
Q ss_pred chHHHHH
Q psy9514 588 WIFQEIK 594 (611)
Q Consensus 588 ~lf~ei~ 594 (611)
++-+.++
T Consensus 229 d~~~~i~ 235 (254)
T PRK14057 229 RLVENTR 235 (254)
T ss_pred CHHHHHH
Confidence 7544443
No 263
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.07 E-value=0.74 Score=46.01 Aligned_cols=178 Identities=12% Similarity=0.163 Sum_probs=99.3
Q ss_pred eeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 372 ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
.+.++..+++.+..|. ..|+|-|||+.+= . .|+ |.-.. .+++.+++..++||-|-||.-..+
T Consensus 2 ~lEvcv~s~~~a~~A~-----~~GAdRiELc~~l-----~---~GG-lTPS~----g~i~~~~~~~~ipv~vMIRpr~gd 63 (201)
T PF03932_consen 2 ILEVCVESLEDALAAE-----AGGADRIELCSNL-----E---VGG-LTPSL----GLIRQAREAVDIPVHVMIRPRGGD 63 (201)
T ss_dssp EEEEEESSHHHHHHHH-----HTT-SEEEEEBTG-----G---GT--B---H----HHHHHHHHHTTSEEEEE--SSSS-
T ss_pred eEEEEeCCHHHHHHHH-----HcCCCEEEECCCc-----c---CCC-cCcCH----HHHHHHHhhcCCceEEEECCCCCC
Confidence 4677888888888875 3499999997421 1 111 21222 355666667889999999973221
Q ss_pred ------CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhh----------hcchhhHhc
Q psy9514 452 ------DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH----------NFMPKFRDW 515 (611)
Q Consensus 452 ------~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~----------~~~~~l~~~ 515 (611)
.......-++.+.+.|++.+.+-.=+. ...-|.+...++....+...-..| ...+.+.+.
T Consensus 64 F~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~----dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~l 139 (201)
T PF03932_consen 64 FVYSDEEIEIMKEDIRMLRELGADGFVFGALTE----DGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIEL 139 (201)
T ss_dssp S---HHHHHHHHHHHHHHHHTT-SEEEE--BET----TSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC----CCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhc
Confidence 113355667778899999986643221 123466667777666654322211 224467788
Q ss_pred CCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEE
Q psy9514 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGV 577 (611)
Q Consensus 516 G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~V 577 (611)
|++.|.-+|.... -....+.++++++.. .++.|+..|||+ ++.+..+++.. ++..|
T Consensus 140 G~~rVLTSGg~~~----a~~g~~~L~~lv~~a~~~i~Im~GgGv~-~~nv~~l~~~t-g~~~~ 196 (201)
T PF03932_consen 140 GFDRVLTSGGAPT----ALEGIENLKELVEQAKGRIEIMPGGGVR-AENVPELVEET-GVREI 196 (201)
T ss_dssp T-SEEEESTTSSS----TTTCHHHHHHHHHHHTTSSEEEEESS---TTTHHHHHHHH-T-SEE
T ss_pred CCCEEECCCCCCC----HHHHHHHHHHHHHHcCCCcEEEecCCCC-HHHHHHHHHhh-CCeEE
Confidence 9999866664321 122456666665543 468899999994 67777777733 36554
No 264
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.07 E-value=1.1 Score=46.60 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecCcccc
Q psy9514 267 TTVGNLPFRRLCKKWGADITCSEMAVAT 294 (611)
Q Consensus 267 t~~gnlpfRrl~~~~Ga~li~tEm~~~~ 294 (611)
.|..+.++-+++.+.|++++.+.-.+..
T Consensus 20 ~tayD~~sA~i~~~aG~d~ilvGdSlgm 47 (263)
T TIGR00222 20 ITAYDYSFAKLFADAGVDVILVGDSLGM 47 (263)
T ss_pred EeccCHHHHHHHHHcCCCEEEECccHhH
Confidence 5677899999999999999998754443
No 265
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=95.06 E-value=1.1 Score=47.37 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=44.3
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecC--CCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGD--ILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGg--I~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
+.-+++.+.++.+...++|+++-|+ | +.+++.+++..| ++.|-|++.+..+|
T Consensus 186 k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~G--i~KiNv~T~i~~~~ 239 (293)
T PRK07315 186 EGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLG--VAKVNVNTECQIAF 239 (293)
T ss_pred CcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcC--CCEEEEccHHHHHH
Confidence 3568899999887754699999999 8 689999999998 99999999998744
No 266
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.05 E-value=0.17 Score=50.83 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=46.3
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+..|+.+.++.+...++||++-||| +.+++.+++..| +++|.+-++++..+++-+.++
T Consensus 143 ~~G~~~l~~~~~~~~~~PV~AiGGI-~~~ni~~l~~~G--a~GiAvisai~~~~d~~~~~~ 200 (211)
T PRK03512 143 PQGLAQLARHVERLADYPTVAIGGI-SLERAPAVLATG--VGSIAVVSAITQAADWRAATA 200 (211)
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCC-CHHHHHHHHHcC--CCEEEEhhHhhCCCCHHHHHH
Confidence 3456666766655457999999999 599999999987 999999999988777655554
No 267
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=95.03 E-value=0.41 Score=49.10 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=86.5
Q ss_pred hcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEE
Q psy9514 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 393 ~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~I 471 (611)
.+|||+|=+--+.. ....||-....-..+.+...+++|.+.+. .||++-+=.|.......+.+.++++.++|+++|
T Consensus 30 ~aG~dai~v~~s~~---a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv 106 (240)
T cd06556 30 DAGLNVMLVGDSQG---MTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGV 106 (240)
T ss_pred HcCCCEEEEChHHH---HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEE
Confidence 45888887643222 11223322223345667777777877775 799999888877655778899999999999999
Q ss_pred EEEccccccccccCcChhHHHHHhhhcc-------cC-------------------ch---hhhhcchhhHhcCCceEEe
Q psy9514 472 TLHGRTREQRYTKQADWDYIEKCAQLCS-------RD-------------------NN---IIHNFMPKFRDWGASLITL 522 (611)
Q Consensus 472 tvhgR~r~qr~~~~adw~~i~~~~~~~~-------~~-------------------~~---~~~~~~~~l~~~G~~~iti 522 (611)
++-+... .+..+..+.. +. .. ...+-+..+.++|++.+.+
T Consensus 107 ~iED~~~-----------~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~ 175 (240)
T cd06556 107 KIEGGEW-----------HIETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVM 175 (240)
T ss_pred EEcCcHH-----------HHHHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 9966420 1111111110 00 01 1122245788899999987
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecC
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD 557 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGg 557 (611)
.+. +.+.++++.+. .++|+++||-
T Consensus 176 e~~----------~~e~~~~i~~~-~~~P~~~~ga 199 (240)
T cd06556 176 ECV----------PVELAKQITEA-LAIPLAGIGA 199 (240)
T ss_pred cCC----------CHHHHHHHHHh-CCCCEEEEec
Confidence 542 45667777665 5899998764
No 268
>KOG1763|consensus
Probab=94.92 E-value=0.0072 Score=62.20 Aligned_cols=67 Identities=39% Similarity=0.711 Sum_probs=46.2
Q ss_pred CCcccCCcccccCCCCCCCCCCCCCCCcCChhHHhh-cCCCCC----C------------------------CCCccee-
Q psy9514 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK-SKPEDI----S------------------------EQCYVFL- 120 (611)
Q Consensus 71 ~~~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~-~k~~d~----~------------------------~~C~~~~- 120 (611)
+...-+|..|-++ .|.-|++|+||||+..--+ .|...+ . -+|-+|.
T Consensus 89 DPKSvvCafFk~g----~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLe 164 (343)
T KOG1763|consen 89 DPKSVVCAFFKQG----TCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLE 164 (343)
T ss_pred CchHHHHHHHhcc----CCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHH
Confidence 4567899999886 6999999999999876444 222211 1 1799884
Q ss_pred -----ccc---cCCCCC-ccccCccccCccCC
Q psy9514 121 -----QHG---YCPMGI-ACRFGSSHLDENGG 143 (611)
Q Consensus 121 -----~~G---~C~~G~-~Crf~~~h~~~~~~ 143 (611)
.|| .||.|- +|.|- |.-..|-
T Consensus 165 AvE~~kYGWfW~CPnGg~~C~Yr--HaLP~Gy 194 (343)
T KOG1763|consen 165 AVENGKYGWFWECPNGGDKCIYR--HALPEGY 194 (343)
T ss_pred HHhcCCccceeECCCCCCeeeee--ecCCcch
Confidence 455 388886 78777 5444454
No 269
>PLN02363 phosphoribosylanthranilate isomerase
Probab=94.87 E-value=1.2 Score=46.16 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=100.1
Q ss_pred eeeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 371 FGVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 371 ~ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
..+.|||- +++++..+++. |+|.|=+.+-.+++.. =.++.+.+|++.+....-.+|.|- .
T Consensus 47 ~~VKICGit~~eda~~a~~~-----GaD~iGfIf~~~SpR~----------Vs~e~a~~I~~~l~~~~~~~VgVf----v 107 (256)
T PLN02363 47 PLVKMCGITSARDAAMAVEA-----GADFIGMILWPKSKRS----------ISLSVAKEISQVAREGGAKPVGVF----V 107 (256)
T ss_pred ceEEECCCCcHHHHHHHHHc-----CCCEEEEecCCCCCCc----------CCHHHHHHHHHhccccCccEEEEE----e
Confidence 45889998 66666666543 7777766543221111 135556666665532101123332 1
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhh---hcccCchh-hhhcchhhH---hcCCceEEe
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ---LCSRDNNI-IHNFMPKFR---DWGASLITL 522 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~---~~~~~~~~-~~~~~~~l~---~~G~~~iti 522 (611)
. +...++++.+++.|.++|.+||-.. .+++..+.. .++..+.. ..+...... ...++.+.+
T Consensus 108 ~---~~~~~I~~~~~~~~ld~VQLHG~e~---------~~~~~~l~~~~~iikai~v~~~~~~~~~~~~~~~~~~D~~Ll 175 (256)
T PLN02363 108 D---DDANTILRAADSSDLELVQLHGNGS---------RAAFSRLVRERKVIYVLNANEDGKLLNVVPEEDCHLADWILV 175 (256)
T ss_pred C---CCHHHHHHHHHhcCCCEEEECCCCC---------HHHHHHhhcCCcEEEEEEECchHHHHHHHHhhccccCCEEEE
Confidence 1 2344677888899999999999542 233333321 11111110 011111111 123677766
Q ss_pred ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCch
Q psy9514 523 HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 523 hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
.... |+.....||..+... ......|+|..||| +++.+.+++... +..+|=+-.|.=..|-+
T Consensus 176 Ds~~--GGtG~t~DW~~l~~~-~~~~~~p~iLAGGL-~peNV~~ai~~~-~P~GVDVsSGVE~~pG~ 237 (256)
T PLN02363 176 DSAT--GGSGKGFNWQNFKLP-SVRSRNGWLLAGGL-TPENVHEAVSLL-KPTGVDVSSGICGPDGI 237 (256)
T ss_pred eCCC--CCCCCccCHHHhccc-ccccCCCEEEECCC-CHHHHHHHHHhc-CCcEEEeCCcccCCCCc
Confidence 6432 333345588766410 11124689999999 699999998764 57888887777655543
No 270
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=94.86 E-value=1.2 Score=46.28 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecCc
Q psy9514 267 TTVGNLPFRRLCKKWGADITCSEMA 291 (611)
Q Consensus 267 t~~gnlpfRrl~~~~Ga~li~tEm~ 291 (611)
.+..+.+.=+++.+.|+++++|.-.
T Consensus 20 ~tayD~~sArl~e~aG~d~i~vGds 44 (264)
T PRK00311 20 LTAYDYPFAKLFDEAGVDVILVGDS 44 (264)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHH
Confidence 4567889999999999999988633
No 271
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=94.85 E-value=0.62 Score=50.31 Aligned_cols=136 Identities=13% Similarity=0.001 Sum_probs=85.5
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.+.-..+...+++.+.+.|..+.+ .||..+-|-.|- .++..-.+.+++|++.+|..+.+.+=..
T Consensus 131 v~~y~s~~~~~~~~~~~~a~~~~~-~Gf~~~KiKvg~---------------~~~~~d~~~v~air~~~g~~~~l~vDaN 194 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAE-EGFHAVKTKIGY---------------PTADEDLAVVRSIRQAVGDGVGLMVDYN 194 (355)
T ss_pred eeEEEeCCCChHHHHHHHHHHHHH-hhhHHHhhhcCC---------------CChHhHHHHHHHHHHhhCCCCEEEEeCC
Confidence 344444444566666555554432 377766664331 2344556788999998865443333222
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
..-+...+.++++.|++.++.+|--
T Consensus 195 ~~~~~~~A~~~~~~l~~~~i~~iEe------------------------------------------------------- 219 (355)
T cd03321 195 QSLTVPEAIERGQALDQEGLTWIEE------------------------------------------------------- 219 (355)
T ss_pred CCcCHHHHHHHHHHHHcCCCCEEEC-------------------------------------------------------
Confidence 1123467889999999888776541
Q ss_pred ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 529 QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 529 g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
...+.+++-++++.+. .++||.+...+.++.++.++++.+ .+|.|++
T Consensus 220 --P~~~~d~~~~~~l~~~-~~ipia~~E~~~~~~~~~~~i~~~-~~d~i~~ 266 (355)
T cd03321 220 --PTLQHDYEGHARIASA-LRTPVQMGENWLGPEEMFKALSAG-ACDLVMP 266 (355)
T ss_pred --CCCCcCHHHHHHHHHh-cCCCEEEcCCCcCHHHHHHHHHhC-CCCeEec
Confidence 1223355666666554 478998888889999999999887 6888876
No 272
>smart00356 ZnF_C3H1 zinc finger.
Probab=94.78 E-value=0.016 Score=38.23 Aligned_cols=21 Identities=48% Similarity=1.230 Sum_probs=18.7
Q ss_pred CCCcceeccccCCCCCccccCc
Q psy9514 114 EQCYVFLQHGYCPMGIACRFGS 135 (611)
Q Consensus 114 ~~C~~~~~~G~C~~G~~Crf~~ 135 (611)
..|+.| ..|.|++|.+|+|..
T Consensus 5 ~~C~~~-~~g~C~~g~~C~~~H 25 (27)
T smart00356 5 ELCKFF-KRGYCPYGDRCKFAH 25 (27)
T ss_pred CcCcCc-cCCCCCCCCCcCCCC
Confidence 479999 899999999999964
No 273
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.76 E-value=0.2 Score=53.33 Aligned_cols=140 Identities=23% Similarity=0.370 Sum_probs=92.3
Q ss_pred EEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccccc---------------ccceeeecccC---
Q psy9514 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---------------ANLFGVQLCGN--- 378 (611)
Q Consensus 317 ~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~~---------------~~~~ivQi~g~--- 378 (611)
++||+|++|+.+.++++.+.+ .+++.|+||+|||.+...+.+.++.+..+ +.++.+-+...
T Consensus 66 i~ql~g~~~~~~~~aa~~~~~-~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~ 144 (319)
T TIGR00737 66 SVQLFGSDPDTMAEAAKINEE-LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD 144 (319)
T ss_pred EEEEeCCCHHHHHHHHHHHHh-CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC
Confidence 699999999999999998765 46899999999998776666666654321 35666665432
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
......+.++.+. ..|+|+|.+|..-+ ..+|.+ + ...+.++.+++.+++||++- | +......
T Consensus 145 ~~~~~~~~a~~l~-~~G~d~i~vh~r~~-----~~~~~~-----~-~~~~~i~~i~~~~~ipvi~n---G---gI~~~~d 206 (319)
T TIGR00737 145 AHINAVEAARIAE-DAGAQAVTLHGRTR-----AQGYSG-----E-ANWDIIARVKQAVRIPVIGN---G---DIFSPED 206 (319)
T ss_pred CcchHHHHHHHHH-HhCCCEEEEEcccc-----cccCCC-----c-hhHHHHHHHHHcCCCcEEEe---C---CCCCHHH
Confidence 2234556666654 46999999974322 122311 1 12467778888888887663 2 2223345
Q ss_pred HHHHHHHcCCCEEEEEcc
Q psy9514 459 FMPKFRDWGASLITLHGR 476 (611)
Q Consensus 459 la~~l~~aGvd~ItvhgR 476 (611)
+.+.++..|+|+|.+ ||
T Consensus 207 a~~~l~~~gad~Vmi-gR 223 (319)
T TIGR00737 207 AKAMLETTGCDGVMI-GR 223 (319)
T ss_pred HHHHHHhhCCCEEEE-Ch
Confidence 555666789999876 54
No 274
>KOG2185|consensus
Probab=94.72 E-value=0.012 Score=62.89 Aligned_cols=34 Identities=29% Similarity=0.706 Sum_probs=24.9
Q ss_pred CCCCcccCCcccccCCCCCCCCCCCCCCCcCChhHHhh
Q psy9514 69 VTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMK 106 (611)
Q Consensus 69 ~~~~~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~ 106 (611)
+++.+-..|+.|+.+ .|+||++|||||...-=|.
T Consensus 135 PTh~sMkpC~ffLeg----~CRF~enCRfSHG~~V~ls 168 (486)
T KOG2185|consen 135 PTHESMKPCKFFLEG----RCRFGENCRFSHGLDVPLS 168 (486)
T ss_pred CcchhhccchHhhcc----ccccCcccccccCcccchh
Confidence 455667778888876 5999999999996554444
No 275
>PRK06801 hypothetical protein; Provisional
Probab=94.72 E-value=1.6 Score=46.03 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred HhcCCceEEeccccccccccC--CccHHHHHHHHhhCCCCcEEEecC--CCCHHHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 513 RDWGASLITLHGRTREQRYTK--QADWDYIEKCAQLCSPAPLYGNGD--ILSYEDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 513 ~~~G~~~itihgrtr~g~~~~--~a~~~~i~~~~k~~~~iPVIgnGg--I~s~eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
++.|++++.+.=.|.-|.|.+ ..+++.+.++.+. .++|++.-|+ | +.+++.+++..| ++.|-|++.+..-
T Consensus 166 ~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~-~~~PLVlHGGSgi-~~e~~~~~i~~G--i~KINv~T~~~~a 239 (286)
T PRK06801 166 DRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQ-TGLPLVLHGGSGI-SDADFRRAIELG--IHKINFYTGMSQA 239 (286)
T ss_pred HHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEECCCCC-CHHHHHHHHHcC--CcEEEehhHHHHH
Confidence 345666664422222233443 3588888888665 4899999998 7 478899999987 9999999887553
No 276
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=94.70 E-value=1.3 Score=47.27 Aligned_cols=147 Identities=8% Similarity=0.027 Sum_probs=79.3
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhc--cceee
Q psy9514 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDFV 344 (611)
Q Consensus 267 t~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~--~v~~i 344 (611)
.|..+.++-+++.+.|++++.+.-.+..- ..|.. + ...|. .+.|...++.+..-. .+...
T Consensus 40 lTAyD~~sA~i~d~aGvD~ILVGDSlgmv-~lG~~----------~--T~~Vt-----ld~mi~H~~aV~Rga~~a~vVa 101 (332)
T PLN02424 40 VTAYDYPSAVHVDSAGIDVCLVGDSAAMV-VHGHD----------T--TLPIT-----LDEMLVHCRAVARGANRPLLVG 101 (332)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCcHHHH-hcCCC----------C--CCCcC-----HHHHHHHHHHHhccCCCCEEEe
Confidence 57789999999999999998887554432 22322 1 11111 223333333332211 11112
Q ss_pred eccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChH
Q psy9514 345 DVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424 (611)
Q Consensus 345 dln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~ 424 (611)
|+..| =+..+++++.+.|.++....|+++|-|-.|. .
T Consensus 102 DmPfg-------------------------SY~~s~e~av~nA~rl~~eaGa~aVKlEGg~------------------~ 138 (332)
T PLN02424 102 DLPFG-------------------------SYESSTDQAVESAVRMLKEGGMDAVKLEGGS------------------P 138 (332)
T ss_pred CCCCC-------------------------CCCCCHHHHHHHHHHHHHHhCCcEEEECCCc------------------H
Confidence 33222 0224778888888887656799998886542 1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEcc---------cc--C-Cc---hHHHHHHHHHHHcCCCEEEEEc
Q psy9514 425 ILQSVITCMNEVSSLPITVKTRTG---------IH--K-DN---NIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 425 ~l~eIv~av~~~~~~PvtVKiR~g---------~~--~-~~---~~a~~la~~l~~aGvd~Itvhg 475 (611)
...++|+.+. ..|+||..-|.+- .. . +. ..+++-+++|+++|+.+|.+-+
T Consensus 139 ~~~~~I~~l~-~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~ 203 (332)
T PLN02424 139 SRVTAAKAIV-EAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFAVVLEC 203 (332)
T ss_pred HHHHHHHHHH-HcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 1235556555 4588988554321 00 0 11 1234455566777777776644
No 277
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=94.57 E-value=0.88 Score=45.68 Aligned_cols=177 Identities=13% Similarity=0.121 Sum_probs=95.2
Q ss_pred eeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 372 GVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 372 ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
.++|||- +++++..+++. |+|.|=+-+..+++. .=.++.+.+|.+.+... -.+|.|- ..
T Consensus 4 ~vKICGi~~~eda~~~~~~-----Gad~iGfI~~~~S~R----------~V~~~~a~~i~~~~~~~-i~~VgVf----~~ 63 (210)
T PRK01222 4 RVKICGITTPEDAEAAAEL-----GADAIGFVFYPKSPR----------YVSPEQAAELAAALPPF-VKVVGVF----VN 63 (210)
T ss_pred eEEECCCCcHHHHHHHHHc-----CCCEEEEccCCCCCC----------cCCHHHHHHHHHhCCCC-CCEEEEE----eC
Confidence 4788888 66666666543 666665543222111 01244445555444311 1233332 11
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhh-----cccCchhh-hhcchhhHh--cCCceEEe
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL-----CSRDNNII-HNFMPKFRD--WGASLITL 522 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~-----~~~~~~~~-~~~~~~l~~--~G~~~iti 522 (611)
+....+.+.+++.+.++|.+||-. +.+++..+... ++...... .++ ..+.+ ..++.+.+
T Consensus 64 ---~~~~~i~~~~~~~~~d~vQLHg~e---------~~~~~~~l~~~~~~~iik~i~v~~~~~l-~~~~~~~~~~d~~L~ 130 (210)
T PRK01222 64 ---ASDEEIDEIVETVPLDLLQLHGDE---------TPEFCRQLKRRYGLPVIKALRVRSAGDL-EAAAAYYGDADGLLL 130 (210)
T ss_pred ---CCHHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCcEEEEEecCCHHHH-HHHHhhhccCCEEEE
Confidence 234466777889999999999953 22334444322 11111110 011 11111 24677777
Q ss_pred cccccc-ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 523 HGRTRE-QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 523 hgrtr~-g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
...+.. |+.....+|..+. +.. +.|||..||| +++.+.+++..- +.++|=+-.|.=..|
T Consensus 131 Ds~~~~~GGtG~~~dw~~l~---~~~-~~p~~LAGGi-~peNv~~ai~~~-~p~gvDvsSgvE~~~ 190 (210)
T PRK01222 131 DAYVGLPGGTGKTFDWSLLP---AGL-AKPWILAGGL-NPDNVAEAIRQV-RPYGVDVSSGVESAP 190 (210)
T ss_pred cCCCCCCCCCCCccchHHhh---hcc-CCCEEEECCC-CHHHHHHHHHhc-CCCEEEecCceECCC
Confidence 654431 2223344788762 122 5699999999 799999999863 477787777665544
No 278
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=94.53 E-value=0.74 Score=46.15 Aligned_cols=166 Identities=13% Similarity=0.079 Sum_probs=103.4
Q ss_pred ccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEc
Q psy9514 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447 (611)
Q Consensus 368 ~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~ 447 (611)
..+++.=+.+.+++++...++.+. ..|++.|||-+.-|. ..+.|+.+++..+ -+-|-.
T Consensus 12 ~~~vI~Vlr~~~~e~a~~~a~Ali-~gGi~~IEITl~sp~------------------a~e~I~~l~~~~p---~~lIGA 69 (211)
T COG0800 12 AQPVVPVIRGDDVEEALPLAKALI-EGGIPAIEITLRTPA------------------ALEAIRALAKEFP---EALIGA 69 (211)
T ss_pred HCCeeEEEEeCCHHHHHHHHHHHH-HcCCCeEEEecCCCC------------------HHHHHHHHHHhCc---ccEEcc
Confidence 346677788999999999999886 469999999766661 3577777777654 233333
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh------hhhcchhhHhcCCceEE
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI------IHNFMPKFRDWGASLIT 521 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~------~~~~~~~l~~~G~~~it 521 (611)
|.--+. +=++.+.++|+++|. +-... .++...+.+.... +..-+-...++|++.+-
T Consensus 70 GTVL~~----~q~~~a~~aGa~fiV-sP~~~-------------~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 70 GTVLNP----EQARQAIAAGAQFIV-SPGLN-------------PEVAKAANRYGIPYIPGVATPTEIMAALELGASALK 131 (211)
T ss_pred ccccCH----HHHHHHHHcCCCEEE-CCCCC-------------HHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhhee
Confidence 432222 336678899999764 33321 1222222222111 11223356677888776
Q ss_pred eccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 522 LHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 522 ihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
+..-.-. ..-.+++.+.--...++|+-.||| |+..+.+++..| +..|-+|-.
T Consensus 132 ~FPa~~~------Gg~~~~ka~~gP~~~v~~~pTGGV-s~~N~~~yla~g--v~avG~Gs~ 183 (211)
T COG0800 132 FFPAEVV------GGPAMLKALAGPFPQVRFCPTGGV-SLDNAADYLAAG--VVAVGLGSW 183 (211)
T ss_pred ecCcccc------CcHHHHHHHcCCCCCCeEeecCCC-CHHHHHHHHhCC--ceEEecCcc
Confidence 5432111 123455555444567899999999 678999999986 888887743
No 279
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=94.51 E-value=1.1 Score=44.93 Aligned_cols=177 Identities=14% Similarity=0.184 Sum_probs=106.7
Q ss_pred eecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 373 VQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 373 vQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
+-|||- +++++..+++. |+|.|=+=+.=+++ ---.++.+.+|++++.. + ..|.|. -
T Consensus 4 vKICGlt~~eda~~a~~~-----gad~iG~If~~~Sp----------R~Vs~~~a~~i~~~v~~-~-~~VgVf------~ 60 (208)
T COG0135 4 VKICGLTRLEDAKAAAKA-----GADYIGFIFVPKSP----------RYVSPEQAREIASAVPK-V-KVVGVF------V 60 (208)
T ss_pred eEECCCCCHHHHHHHHHc-----CCCEEEEEEcCCCC----------CcCCHHHHHHHHHhCCC-C-CEEEEE------C
Confidence 456676 56666665443 55655442221111 11235566666666543 1 122222 1
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh--h-----hcchhhHhcCCceEEecc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII--H-----NFMPKFRDWGASLITLHG 524 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~--~-----~~~~~l~~~G~~~itihg 524 (611)
+ +...++.+.+...+.++|.+||-- +++++.++.......-.+. . ..........++.+.+..
T Consensus 61 n-~~~~~i~~i~~~~~ld~VQlHG~e---------~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa 130 (208)
T COG0135 61 N-ESIEEILEIAEELGLDAVQLHGDE---------DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDA 130 (208)
T ss_pred C-CCHHHHHHHHHhcCCCEEEECCCC---------CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcC
Confidence 1 234467778889999999999964 5566777766421111111 1 122334445678887776
Q ss_pred cccc--ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 525 RTRE--QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 525 rtr~--g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.... |+.....||..+... ....|++..||+ |++.+.++++.+ ...+|=+..|.=.+|
T Consensus 131 ~~~~~~GGtG~~fDW~~l~~~---~~~~~~~LAGGL-~p~NV~~ai~~~-~p~gvDvSSGVE~~p 190 (208)
T COG0135 131 KVPGLPGGTGQTFDWNLLPKL---RLSKPVMLAGGL-NPDNVAEAIALG-PPYGVDVSSGVESSP 190 (208)
T ss_pred CCCCCCCCCCcEECHHHhccc---cccCCEEEECCC-CHHHHHHHHHhc-CCceEEeccccccCC
Confidence 6543 444556699887764 246789999999 799999999988 458888888877766
No 280
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=94.46 E-value=0.79 Score=48.13 Aligned_cols=68 Identities=21% Similarity=0.366 Sum_probs=51.8
Q ss_pred hhHhcCCceEEe-----ccccccccccCCccHHHHHHHHhhCCCCcEEEec--CCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 511 KFRDWGASLITL-----HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG--DILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 511 ~l~~~G~~~iti-----hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnG--gI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
...+.|++++.+ ||.... .+.-+++.++++.+.. ++|+++-| || +.+++.+++..| ++.|-|++.+
T Consensus 161 f~~~tgvD~Lavs~Gt~hg~~~~---~~~l~~e~L~~i~~~~-~iPlv~hGgSGi-~~e~i~~~i~~G--i~kiNv~T~l 233 (282)
T TIGR01859 161 FVKETGVDYLAAAIGTSHGKYKG---EPGLDFERLKEIKELT-NIPLVLHGASGI-PEEQIKKAIKLG--IAKINIDTDC 233 (282)
T ss_pred HHHHHCcCEEeeccCccccccCC---CCccCHHHHHHHHHHh-CCCEEEECCCCC-CHHHHHHHHHcC--CCEEEECcHH
Confidence 344579999975 543221 2345788898887764 89999999 88 588899999997 9999999887
Q ss_pred hh
Q psy9514 584 LI 585 (611)
Q Consensus 584 L~ 585 (611)
..
T Consensus 234 ~~ 235 (282)
T TIGR01859 234 RI 235 (282)
T ss_pred HH
Confidence 63
No 281
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=94.38 E-value=0.2 Score=51.08 Aligned_cols=110 Identities=18% Similarity=0.256 Sum_probs=76.3
Q ss_pred EecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCccccc
Q psy9514 287 CSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366 (611)
Q Consensus 287 ~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~~ 366 (611)
.+|++...+ ......+...+ +..+.++++||.|++|+.+.++++.+.++ .+.||||+|||.+.....+.+..|+.
T Consensus 49 ~~ef~~~~~-~~~~~~~~~~~--~~~~~p~~vqi~g~~~~~~~~aa~~~~~~--~~~ielN~gCP~~~v~~~g~G~~Ll~ 123 (233)
T cd02911 49 RKEFLPDDP-LEFIEGEIKAL--KDSNVLVGVNVRSSSLEPLLNAAALVAKN--AAILEINAHCRQPEMVEAGAGEALLK 123 (233)
T ss_pred Cccccccch-HHHHHHHHHHh--hccCCeEEEEecCCCHHHHHHHHHHHhhc--CCEEEEECCCCcHHHhcCCcchHHcC
Confidence 677776653 22222333333 34467999999999999999999988774 48999999999997766666665554
Q ss_pred c--------------ccceeeecccCchHHHHHHHHHHHHhcccceEEec
Q psy9514 367 R--------------ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVN 402 (611)
Q Consensus 367 ~--------------~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN 402 (611)
+ +.++.+-+..+...+..+.++.+. .+|+|+|-+.
T Consensus 124 ~p~~l~eiv~avr~~~~pVsvKir~g~~~~~~~la~~l~-~aG~d~ihv~ 172 (233)
T cd02911 124 DPERLSEFIKALKETGVPVSVKIRAGVDVDDEELARLIE-KAGADIIHVD 172 (233)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcCcCHHHHHHHHH-HhCCCEEEEC
Confidence 2 357777776553145667777765 4699987553
No 282
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.36 E-value=1.4 Score=45.57 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecCc
Q psy9514 267 TTVGNLPFRRLCKKWGADITCSEMA 291 (611)
Q Consensus 267 t~~gnlpfRrl~~~~Ga~li~tEm~ 291 (611)
.+..+.++=+++.+.|+++++|.-.
T Consensus 17 ~~ayD~~sA~l~e~aG~d~i~vGds 41 (254)
T cd06557 17 LTAYDYPTAKLADEAGVDVILVGDS 41 (254)
T ss_pred EeCCCHHHHHHHHHcCCCEEEECHH
Confidence 3567889999999999999988633
No 283
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.36 E-value=0.58 Score=50.20 Aligned_cols=109 Identities=12% Similarity=0.167 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN 502 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~ 502 (611)
++...+.++.+++..+.|+++.++.. +.+...++++.++++|+|+|.++........ +
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~---~~~e~~~~a~~~~~agad~ielN~scpp~~~----~--------------- 143 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGS---SAGGWVDYARQIEQAGADALELNIYYLPTDP----D--------------- 143 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccC---CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCC----C---------------
Confidence 44555666667666789999998642 3356678899999999999999764311110 0
Q ss_pred hhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEe--cCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN--GDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgn--GgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.+|++ .....++.++.+.+. .++||+.. +++.+..+..+.++.. ++|+|.+
T Consensus 144 -------------------~~g~~-----~~~~~~eil~~v~~~-~~iPV~vKl~p~~~~~~~~a~~l~~~-G~dgI~~ 196 (334)
T PRK07565 144 -------------------ISGAE-----VEQRYLDILRAVKSA-VSIPVAVKLSPYFSNLANMAKRLDAA-GADGLVL 196 (334)
T ss_pred -------------------Ccccc-----HHHHHHHHHHHHHhc-cCCcEEEEeCCCchhHHHHHHHHHHc-CCCeEEE
Confidence 00100 001124566666544 58999965 5555666776666655 5999866
No 284
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=94.31 E-value=3.1 Score=42.41 Aligned_cols=181 Identities=13% Similarity=0.081 Sum_probs=103.1
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~ 447 (611)
.+..++...+...+.+-.+++++ .|+|.| |+-=|+ +..+..+-..++++++. +.|+-|-+=+
T Consensus 14 ~I~pSil~ad~~~l~~el~~l~~-~g~d~lHiDVMDG~-------------FVPNitfGp~~i~~i~~--~~~~DvHLMv 77 (228)
T PRK08091 14 PISVGILASNWLKFNETLTTLSE-NQLRLLHFDIADGQ-------------FSPFFTVGAIAIKQFPT--HCFKDVHLMV 77 (228)
T ss_pred eEEeehhhcCHHHHHHHHHHHHH-CCCCEEEEeccCCC-------------cCCccccCHHHHHHhCC--CCCEEEEecc
Confidence 45567778888888877777753 355553 333333 11222233456677763 5676665332
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch--h----------hhhcchhhHhc
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN--I----------IHNFMPKFRDW 515 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~--~----------~~~~~~~l~~~ 515 (611)
....++++.+.++|++.|++|--.... +....+.+++... + ...+.+-+.
T Consensus 78 ------~~P~~~i~~~~~aGad~It~H~Ea~~~----------~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-- 139 (228)
T PRK08091 78 ------RDQFEVAKACVAAGADIVTLQVEQTHD----------LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD-- 139 (228)
T ss_pred ------CCHHHHHHHHHHhCCCEEEEcccCccc----------HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--
Confidence 123478999999999999999864211 1122222333222 1 122223333
Q ss_pred CCceEEeccccccccccCCc----cHHHHHHHHh---h-CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 516 GASLITLHGRTREQRYTKQA----DWDYIEKCAQ---L-CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 516 G~~~itihgrtr~g~~~~~a----~~~~i~~~~k---~-~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
.++.|++..-.. ++.+.. .++-|+++.+ + ..++.|-.=||| +.+.+.++.+.| ||.+++|+++..++
T Consensus 140 ~vD~VLiMtV~P--GfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI-~~~ti~~l~~aG--aD~~V~GSalF~~~ 214 (228)
T PRK08091 140 QIDLIQILTLDP--RTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSM-TLELASYLKQHQ--IDWVVSGSALFSQG 214 (228)
T ss_pred hcCEEEEEEECC--CCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHCC--CCEEEEChhhhCCC
Confidence 256664432211 122222 2334444332 2 124557788999 489999999998 99999999988777
Q ss_pred ch
Q psy9514 588 WI 589 (611)
Q Consensus 588 ~l 589 (611)
+.
T Consensus 215 d~ 216 (228)
T PRK08091 215 EL 216 (228)
T ss_pred CH
Confidence 64
No 285
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.22 E-value=0.36 Score=52.05 Aligned_cols=152 Identities=20% Similarity=0.126 Sum_probs=87.3
Q ss_pred CCCeEEEEecCC-------ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCc----cccc------c----ccc
Q psy9514 312 SEDLFGVQLCGN-------NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS----GLLQ------R----ANL 370 (611)
Q Consensus 312 ~e~~~~vQi~g~-------~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~----~l~~------~----~~~ 370 (611)
...|+++.|.++ ....+...++.+.+ .+|++++|.+||........... +++. . +.|
T Consensus 136 ~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~--~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~P 213 (344)
T PRK05286 136 RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP--YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVP 213 (344)
T ss_pred CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh--hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCc
Confidence 346799999876 34566677766655 37999999999975321111111 1111 1 278
Q ss_pred eeeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccc-----eeccccccccccCh--HHHHHHHHHHHhhc--CCC
Q psy9514 371 FGVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF-----IYKQGSGSGLLQRA--NILQSVITCMNEVS--SLP 440 (611)
Q Consensus 371 ~ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~-----v~~~g~GsaLl~r~--~~l~eIv~av~~~~--~~P 440 (611)
+.+-+.-+ +.+++.+.|+.+. ..|+|+|.+.-+-+... ....++|+ +-..+ ....+.+..+++.+ ++|
T Consensus 214 V~vKlsp~~~~~~~~~ia~~l~-~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg-~SG~~~~~~~l~~v~~l~~~~~~~ip 291 (344)
T PRK05286 214 LLVKIAPDLSDEELDDIADLAL-EHGIDGVIATNTTLSRDGLKGLPNADEAGG-LSGRPLFERSTEVIRRLYKELGGRLP 291 (344)
T ss_pred eEEEeCCCCCHHHHHHHHHHHH-HhCCcEEEEeCCccccccccccccCCCCCC-cccHHHHHHHHHHHHHHHHHhCCCCC
Confidence 88888855 3346777777765 46999999965432110 00112221 11112 23456778888877 567
Q ss_pred EEEEEEccccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 441 ITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 441 vtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
|+. .|. ......+.+.+. +|+++|.|.
T Consensus 292 Iig---~GG---I~s~eda~e~l~-aGAd~V~v~ 318 (344)
T PRK05286 292 IIG---VGG---IDSAEDAYEKIR-AGASLVQIY 318 (344)
T ss_pred EEE---ECC---CCCHHHHHHHHH-cCCCHHHHH
Confidence 654 232 223334445554 899987653
No 286
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=94.21 E-value=0.28 Score=49.05 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=63.2
Q ss_pred CCEEEEEEccccC-----CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhH
Q psy9514 439 LPITVKTRTGIHK-----DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFR 513 (611)
Q Consensus 439 ~PvtVKiR~g~~~-----~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~ 513 (611)
+||++-+.-.... ......++++.++++|+++|++..-..
T Consensus 11 ~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~----------------------------------- 55 (217)
T cd00331 11 LGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPK----------------------------------- 55 (217)
T ss_pred ceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCcc-----------------------------------
Confidence 5777666432111 224577999999999999998764321
Q ss_pred hcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 514 ~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
......+.++.+.+. +++||+.-|.|.+.++++.+++.| +|+|.++-..+.
T Consensus 56 ------------------~~~g~~~~~~~i~~~-v~iPi~~~~~i~~~~~v~~~~~~G--ad~v~l~~~~~~ 106 (217)
T cd00331 56 ------------------YFQGSLEDLRAVREA-VSLPVLRKDFIIDPYQIYEARAAG--ADAVLLIVAALD 106 (217)
T ss_pred ------------------ccCCCHHHHHHHHHh-cCCCEEECCeecCHHHHHHHHHcC--CCEEEEeeccCC
Confidence 111233445554443 489999888899999999999998 999999866654
No 287
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=94.19 E-value=0.2 Score=49.60 Aligned_cols=178 Identities=17% Similarity=0.292 Sum_probs=90.0
Q ss_pred eecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 373 VQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 373 vQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
|.|||. +++++..+++. |.|.|=+.+. |. |----.+..+.+|++. +. |..|- +..
T Consensus 1 vKICGi~~~~da~~~~~~-----g~d~~Gfi~~-~~---------S~R~v~~~~a~~l~~~----~~-~~~Vg----Vf~ 56 (197)
T PF00697_consen 1 VKICGITRPEDARLAAEL-----GADYLGFIFY-PK---------SPRYVSPDQARELVSA----VP-PKIVG----VFV 56 (197)
T ss_dssp EEEE---SHHHHHHHHHH-----TSSEEEEE---TT---------CTTB--HHHHHHHHCC----SS-SSEEE----EES
T ss_pred CeECCCCcHHHHHHHHHc-----CCCEEeeecC-CC---------CCCccCHHHHHHHHHh----cC-CCEEE----EEc
Confidence 456666 66677766655 5666555432 21 1111124444444433 33 22232 222
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhc---ccCchhh-hhcchhhHhcC-CceEEecccc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC---SRDNNII-HNFMPKFRDWG-ASLITLHGRT 526 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~---~~~~~~~-~~~~~~l~~~G-~~~itihgrt 526 (611)
+ ....++++.+.+.+.++|.+||.... +|+..+..-+ +...... ......+.... ++++.+++
T Consensus 57 ~-~~~~~I~~~~~~~~ld~vQLHG~e~~---------e~~~~l~~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~-- 124 (197)
T PF00697_consen 57 N-QSPEEILEIVEELGLDVVQLHGDESP---------EYIKLLRAGLPVIKAIHVDKDIDLLDYLERYESVDYFLLDS-- 124 (197)
T ss_dssp S-S-HHHHHHHHHHCTESEEEE-SGG-H---------HHHHHHHTTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEES--
T ss_pred C-CCHHHHHHHHHHcCCCEEEECCCCCH---------HHHHHhhcCceEEEEEEeCCccchHHHHHhcccccEEeEcc--
Confidence 2 24557778889999999999997621 2222222111 1111100 01223333333 37888773
Q ss_pred ccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 527 r~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
..|+.....||..+..+.....+.|+|..||| +++.+.+++... +..+|=+-.|.=.+|-
T Consensus 125 ~~GgtG~~~dw~~~~~~~~~~~~~p~iLAGGl-~p~NV~~ai~~~-~p~gvDvsSGvE~~pG 184 (197)
T PF00697_consen 125 GSGGTGKTFDWSLLKKIVESYSPKPVILAGGL-NPENVREAIRQV-RPYGVDVSSGVETSPG 184 (197)
T ss_dssp SSTSSSS---GGGGCCCHHT-GTSTEEEESS---TTTHHHHHHHC---SEEEESGGGEEETT
T ss_pred CCCcCCcccCHHHhhhhhhhcccCcEEEEcCC-ChHHHHHHHHhc-CceEEEeCCccccCCC
Confidence 22323344589888877664447899999999 688999999865 6899988888766653
No 288
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=94.18 E-value=3.5 Score=42.04 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=102.8
Q ss_pred eeeecccCchHHHHHHHHHHHHhcccceE--EeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFV--DVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 371 ~ivQi~g~~p~~~~~aA~~l~~~~g~D~I--ELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+..++...+...+.+-.+.++. |+|.| |+-=|+ +..+..+-..+++++++..+.|+-|-+=+.
T Consensus 5 I~pSil~ad~~~l~~el~~l~~--g~d~lH~DiMDG~-------------FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~ 69 (229)
T PRK09722 5 ISPSLMCMDLLKFKEQIEFLNS--KADYFHIDIMDGH-------------FVPNLTLSPFFVSQVKKLASKPLDVHLMVT 69 (229)
T ss_pred EEeehhhcCHHHHHHHHHHHHh--CCCEEEEecccCc-------------cCCCcccCHHHHHHHHhcCCCCeEEEEEec
Confidence 5567778888888887787754 55654 332233 222223335688889887778877765432
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh----------hhhcchhhHhcCCc
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI----------IHNFMPKFRDWGAS 518 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~----------~~~~~~~l~~~G~~ 518 (611)
.-..+++.+.++|++.|++|.-... .++..+.+.+++...+ ...+.+-+. -++
T Consensus 70 ------~P~~~i~~~~~aGad~it~H~Ea~~---------~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~--~vD 132 (229)
T PRK09722 70 ------DPQDYIDQLADAGADFITLHPETIN---------GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIH--LLD 132 (229)
T ss_pred ------CHHHHHHHHHHcCCCEEEECccCCc---------chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHH--hcC
Confidence 2347889999999999999986311 0111222223332221 112222232 245
Q ss_pred eEEeccccccccccCCc----cHHHHHHHHh---hC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 519 LITLHGRTREQRYTKQA----DWDYIEKCAQ---LC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a----~~~~i~~~~k---~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.|++..-.. ++.++. .++-|+++.+ .. .++-|-.=|||+ .+.+.++.+.| ||.+++|++++-
T Consensus 133 ~VLvMsV~P--Gf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~-~~~i~~~~~aG--ad~~V~Gss~iF 202 (229)
T PRK09722 133 KITVMTVDP--GFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCN-QKTYEKLMEAG--ADVFIVGTSGLF 202 (229)
T ss_pred EEEEEEEcC--CCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcC--CCEEEEChHHHc
Confidence 554432211 122322 2334444332 21 245577889995 88999999998 999999987443
No 289
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=94.18 E-value=1.5 Score=46.11 Aligned_cols=97 Identities=12% Similarity=-0.003 Sum_probs=59.9
Q ss_pred CchHHHHHHHHHHHHhcccceEEeccCC-CccceeccccccccccChHHHHHHHHHHHhh-cCCCEEEEEEccc---cCC
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGC-PIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGI---HKD 452 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~gC-P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~---~~~ 452 (611)
.++..+.+.++.+. .+|+.+|-|-=.. |..+-...+-|...+-.++...+.|++++++ .+.++.|--|+.. ...
T Consensus 89 g~~~~v~r~V~~l~-~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~ 167 (285)
T TIGR02320 89 GNFEHFRRLVRKLE-RRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKG 167 (285)
T ss_pred CCHHHHHHHHHHHH-HcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCC
Confidence 46777777777775 3799999882211 2110001112222334555555666666655 4667777777432 124
Q ss_pred chHHHHHHHHHHHcCCCEEEEEc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~Itvhg 475 (611)
.+++++-+++..++|+|+|-+++
T Consensus 168 ~~eAi~Ra~ay~eAGAD~ifv~~ 190 (285)
T TIGR02320 168 MEDALKRAEAYAEAGADGIMIHS 190 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEecC
Confidence 56788889999999999999985
No 290
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=94.10 E-value=0.2 Score=56.67 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=34.9
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
|+.|+++.+.++++||++ |+|.|.+++..+++.| ||+|.+|
T Consensus 270 ~~~i~~ik~~~~~~~v~a-G~V~t~~~a~~~~~aG--ad~I~vg 310 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIA-GNVVTADQAKNLIDAG--ADGLRIG 310 (495)
T ss_pred HHHHHHHHhhCCCceEEE-CCcCCHHHHHHHHHcC--CCEEEEC
Confidence 567787777666788777 9999999999999998 9999865
No 291
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.06 E-value=0.38 Score=52.00 Aligned_cols=85 Identities=16% Similarity=0.264 Sum_probs=57.7
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
..+.|-.-+|..+ +..+.++.|.++|+|+|.|..-.....
T Consensus 95 ~~l~V~aavg~~~---~~~er~~~L~~agvD~ivID~a~g~s~------------------------------------- 134 (352)
T PF00478_consen 95 GRLLVAAAVGTRD---DDFERAEALVEAGVDVIVIDSAHGHSE------------------------------------- 134 (352)
T ss_dssp SCBCEEEEEESST---CHHHHHHHHHHTT-SEEEEE-SSTTSH-------------------------------------
T ss_pred ccceEEEEecCCH---HHHHHHHHHHHcCCCEEEccccCccHH-------------------------------------
Confidence 4555555555543 346778889999999999965432111
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
.-.+.++.+.+.++++||| .|.|-|++-+.++++.| ||+|-||=|
T Consensus 135 ----------------~~~~~ik~ik~~~~~~~vi-aGNV~T~e~a~~L~~aG--ad~vkVGiG 179 (352)
T PF00478_consen 135 ----------------HVIDMIKKIKKKFPDVPVI-AGNVVTYEGAKDLIDAG--ADAVKVGIG 179 (352)
T ss_dssp ----------------HHHHHHHHHHHHSTTSEEE-EEEE-SHHHHHHHHHTT---SEEEESSS
T ss_pred ----------------HHHHHHHHHHHhCCCceEE-ecccCCHHHHHHHHHcC--CCEEEEecc
Confidence 0124566666777779998 57799999999999998 999999844
No 292
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=93.86 E-value=0.95 Score=48.75 Aligned_cols=128 Identities=13% Similarity=0.101 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhccceeeeccCC---------CCcc-hhhccCCCcccc--------------cc-ccceeeecc------
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLG---------CPIE-FIYKQGSGSGLL--------------QR-ANLFGVQLC------ 376 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~g---------cp~~-~~~~~~~~~~l~--------------~~-~~~~ivQi~------ 376 (611)
+..+|....+ .++|.|+|+++ +|.. ..-++.+++ |. .. +.++++.+.
T Consensus 144 f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~ 221 (337)
T PRK13523 144 FKQAAVRAKE-AGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVWDGPLFVRISASDYHP 221 (337)
T ss_pred HHHHHHHHHH-cCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence 3455555443 68999999988 5743 333443333 21 01 345666555
Q ss_pred -cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchH
Q psy9514 377 -GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455 (611)
Q Consensus 377 -g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~ 455 (611)
|.+++++.+.++.++ ..|+|.|+|..|.... .....+.+ .....++.+++.+++||.+-=++. +
T Consensus 222 ~G~~~~e~~~i~~~l~-~~gvD~i~vs~g~~~~-~~~~~~~~-------~~~~~~~~ik~~~~ipVi~~G~i~------~ 286 (337)
T PRK13523 222 GGLTVQDYVQYAKWMK-EQGVDLIDVSSGAVVP-ARIDVYPG-------YQVPFAEHIREHANIATGAVGLIT------S 286 (337)
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEeCCCCCCC-CCCCCCcc-------ccHHHHHHHHhhcCCcEEEeCCCC------C
Confidence 457889999999986 4689999999886211 01111111 123456677777888987642221 1
Q ss_pred HHHHHH-HHHHcCCCEEEE
Q psy9514 456 IHNFMP-KFRDWGASLITL 473 (611)
Q Consensus 456 a~~la~-~l~~aGvd~Itv 473 (611)
. +.+. .|.+.++|+|.+
T Consensus 287 ~-~~a~~~l~~g~~D~V~~ 304 (337)
T PRK13523 287 G-AQAEEILQNNRADLIFI 304 (337)
T ss_pred H-HHHHHHHHcCCCChHHh
Confidence 2 3344 445555888654
No 293
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=93.57 E-value=0.65 Score=48.56 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.++.|++.|+| +++.+.++...| +|.|.+|....
T Consensus 228 ~~~~ieAsGgI-t~~ni~~ya~~G--vD~IsvG~l~~ 261 (273)
T PRK05848 228 PHVLLEASGNI-TLENINAYAKSG--VDAISSGSLIH 261 (273)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcC--CCEEEeChhhc
Confidence 35679999999 999999999998 99999996544
No 294
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.53 E-value=2.2 Score=47.28 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=50.5
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a 456 (611)
+.+++.+.+-++.+.+ .||..+-|..| .+++.-.+.++++++.+|..+.+.+=....-+.+++
T Consensus 194 ~~~~~~~~~~a~~~~~-~Gf~~~KiKvg----------------~~~~~d~~~v~avRe~vG~~~~L~vDaN~~w~~~~A 256 (415)
T cd03324 194 GYSDEKLRRLCKEALA-QGFTHFKLKVG----------------ADLEDDIRRCRLAREVIGPDNKLMIDANQRWDVPEA 256 (415)
T ss_pred CCCHHHHHHHHHHHHH-cCCCEEEEeCC----------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHH
Confidence 3466666555555432 48888877643 134555678899999887655444333221244789
Q ss_pred HHHHHHHHHcCCCEE
Q psy9514 457 HNFMPKFRDWGASLI 471 (611)
Q Consensus 457 ~~la~~l~~aGvd~I 471 (611)
.+++++|++.++.+|
T Consensus 257 ~~~~~~L~~~~l~~i 271 (415)
T cd03324 257 IEWVKQLAEFKPWWI 271 (415)
T ss_pred HHHHHHhhccCCCEE
Confidence 999999999888765
No 295
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.53 E-value=0.32 Score=53.49 Aligned_cols=72 Identities=8% Similarity=0.078 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccC
Q psy9514 454 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 533 (611)
Q Consensus 454 ~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~ 533 (611)
+.+.+.++.|.++|+|.|.|...... .
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~-----------------------------------------------------~ 178 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGH-----------------------------------------------------S 178 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCC-----------------------------------------------------C
Confidence 44678899999999999998665421 1
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
..-++.++++.+.+++++|| .|+|.|++++..+++.| +|+|.+|=
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi-~g~V~T~e~a~~l~~aG--aD~I~vG~ 223 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLI-AGNIVTKEAALDLISVG--ADCLKVGI 223 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEE-EEecCCHHHHHHHHHcC--CCEEEECC
Confidence 11235566666666666644 78999999999999998 99999873
No 296
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.40 E-value=2.4 Score=45.73 Aligned_cols=91 Identities=13% Similarity=0.082 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHHhcc-cceEEeccCCCcccee-ccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchH
Q psy9514 378 NNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIY-KQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g-~D~IELN~gCP~~~v~-~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~ 455 (611)
.++++..+.++.+++ .| +|.|+|..|.-..... ........ .......++++.+++.+++||.+- |. ..+
T Consensus 225 ~~~~e~~~~~~~l~~-~G~vd~i~vs~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ik~~~~ipvi~~---G~---i~~ 296 (343)
T cd04734 225 LSPDEALEIAARLAA-EGLIDYVNVSAGSYYTLLGLAHVVPSMG-MPPGPFLPLAARIKQAVDLPVFHA---GR---IRD 296 (343)
T ss_pred CCHHHHHHHHHHHHh-cCCCCEEEeCCCCCCcccccccccCCCC-CCcchhHHHHHHHHHHcCCCEEee---CC---CCC
Confidence 356788888888864 56 8999997765321100 00011111 112223467777888888898774 21 112
Q ss_pred HHHHHHHHHHcCCCEEEEEccc
Q psy9514 456 IHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 456 a~~la~~l~~aGvd~ItvhgR~ 477 (611)
...+.+.+++.++|+|.+ ||.
T Consensus 297 ~~~~~~~l~~~~~D~V~~-gR~ 317 (343)
T cd04734 297 PAEAEQALAAGHADMVGM-TRA 317 (343)
T ss_pred HHHHHHHHHcCCCCeeee-cHH
Confidence 234444566677998765 443
No 297
>KOG1677|consensus
Probab=93.38 E-value=0.061 Score=57.37 Aligned_cols=64 Identities=28% Similarity=0.563 Sum_probs=49.4
Q ss_pred cCCcccccCCCCCCCCCCCCCCCcCChhHHhhcC---------CCC-CCCCCcceeccccCCC-CCccccCccccCccCC
Q psy9514 75 CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK---------PED-ISEQCYVFLQHGYCPM-GIACRFGSSHLDENGG 143 (611)
Q Consensus 75 ~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k---------~~d-~~~~C~~~~~~G~C~~-G~~Crf~~~h~~~~~~ 143 (611)
..|..+... +.|.|+..|+|.|-.......- |.- -+..|-.|...|+|.| |.+||| .|..+..+
T Consensus 87 ~~~~~~~~~---~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crf--ah~~~e~r 161 (332)
T KOG1677|consen 87 GDCSAYLRT---GVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRF--AHGLEELR 161 (332)
T ss_pred ccccccccc---CCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhh--cCCccccc
Confidence 789999887 5799999999999764443321 111 1579999999999999 999999 67766544
No 298
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=93.32 E-value=2.4 Score=42.53 Aligned_cols=172 Identities=16% Similarity=0.173 Sum_probs=90.8
Q ss_pred eecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 373 VQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 373 vQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
+.|||- +++++..+++. |+|.|=+.+--+++.. =.++.+.+|++.+...+ .+|.|-. .
T Consensus 3 vKICGit~~eda~~~~~~-----GaD~iGfIf~~~SpR~----------V~~~~a~~i~~~~~~~~-~~VgVf~----~- 61 (207)
T PRK13958 3 LKFCGFTTIKDVTAASQL-----PIDAIGFIHYEKSKRH----------QTITQIKKLASAVPNHI-DKVCVVV----N- 61 (207)
T ss_pred EEEcCCCcHHHHHHHHHc-----CCCEEEEecCCCCccc----------CCHHHHHHHHHhCCCCC-CEEEEEe----C-
Confidence 677887 56666666543 7777766532221111 13555566666543211 1233321 1
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhh------cccCchhhhhcchhhHh--cCCceEEec
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL------CSRDNNIIHNFMPKFRD--WGASLITLH 523 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~------~~~~~~~~~~~~~~l~~--~G~~~itih 523 (611)
+....+.+.+...|.++|.+||-. +.+++..+... ++..... ......+.. ..++++.+.
T Consensus 62 --~~~~~i~~~~~~~~~d~vQLHG~e---------~~~~~~~l~~~~~~~~iika~~~~-~~~~~~~~~~~~~~d~~LlD 129 (207)
T PRK13958 62 --PDLTTIEHILSNTSINTIQLHGTE---------SIDFIQEIKKKYSSIKIIKALPAD-ENIIQNINKYKGFVDLFIID 129 (207)
T ss_pred --CCHHHHHHHHHhCCCCEEEECCCC---------CHHHHHHHhhcCCCceEEEEeccc-HHHHHHHHHHHhhCCEEEEc
Confidence 234567777889999999999953 12334333321 1111110 011111111 136777776
Q ss_pred ccccc-ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHH-cCCCccEEEEcHHh
Q psy9514 524 GRTRE-QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK-KSPSISGVMIGRGA 583 (611)
Q Consensus 524 grtr~-g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~-~G~~aD~VmIGRga 583 (611)
..... |+.-...||..+..+ ...|+|..||+ |++.+.+++. .- +.++|=+-.|.
T Consensus 130 s~~~~~GGtG~~~dw~~~~~~----~~~p~iLAGGL-~peNV~~a~~~~~-~p~gVDvsSGV 185 (207)
T PRK13958 130 TPSVSYGGTGQTYDWTILKHI----KDIPYLIAGGI-NSENIQTVEQLKL-SHQGYDIASGI 185 (207)
T ss_pred CCCCCCCcCCcEeChHHhhhc----cCCCEEEECCC-CHHHHHHHHhcCC-CCCEEEccccc
Confidence 53211 223334589888754 24599999999 6888888764 22 25666665554
No 299
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.27 E-value=0.3 Score=54.56 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=35.6
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.++.|+++.+.++++||++ |+|.|++++..+++.| +|+|-+|
T Consensus 252 ~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aG--ad~i~vg 293 (450)
T TIGR01302 252 VIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAG--ADGLRVG 293 (450)
T ss_pred HHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhC--CCEEEEC
Confidence 3567777777767899998 9999999999999998 9999765
No 300
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=93.21 E-value=1.9 Score=44.70 Aligned_cols=147 Identities=16% Similarity=0.165 Sum_probs=71.9
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhc--ccee
Q psy9514 266 LTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQM--AVDF 343 (611)
Q Consensus 266 Mt~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~--~v~~ 343 (611)
|.|..+.|+-+++...|+|++...-.+..-. .|..+ .+.|. -+.|..-++.+..-. .+-.
T Consensus 20 ~lTaYD~~~A~~~d~agvD~iLVGDSlgmv~-~G~~s------------T~~vt-----ld~mi~h~~aV~Rga~~~~vv 81 (261)
T PF02548_consen 20 MLTAYDYPSARIADEAGVDIILVGDSLGMVV-LGYDS------------TLPVT-----LDEMIYHTKAVRRGAPNAFVV 81 (261)
T ss_dssp EEE--SHHHHHHHHHTT-SEEEE-TTHHHHT-T--SS------------STT-------HHHHHHHHHHHHHH-TSSEEE
T ss_pred EEecccHHHHHHHHHcCCCEEEeCCcHHHhe-eCCCC------------CcCcC-----HHHHHHHHHHHHhcCCCceEE
Confidence 3566789999999999999988775544322 22221 11111 223332233333311 1222
Q ss_pred eeccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccCh
Q psy9514 344 VDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423 (611)
Q Consensus 344 idln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~ 423 (611)
.|+..+. .-.+++.+.+.|.++..+.|+|+|-|-.|.-
T Consensus 82 ~DmPf~s-------------------------y~~s~e~av~nA~rl~ke~GadaVKlEGg~~----------------- 119 (261)
T PF02548_consen 82 ADMPFGS-------------------------YQASPEQAVRNAGRLMKEAGADAVKLEGGAE----------------- 119 (261)
T ss_dssp EE--TTS-------------------------STSSHHHHHHHHHHHHHTTT-SEEEEEBSGG-----------------
T ss_pred ecCCccc-------------------------ccCCHHHHHHHHHHHHHhcCCCEEEeccchh-----------------
Confidence 2332221 1136778888888887778999988864432
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEEcc---------cc---CCch---HHHHHHHHHHHcCCCEEEEEc
Q psy9514 424 NILQSVITCMNEVSSLPITVKTRTG---------IH---KDNN---IIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 424 ~~l~eIv~av~~~~~~PvtVKiR~g---------~~---~~~~---~a~~la~~l~~aGvd~Itvhg 475 (611)
..++|+.+.+ .|+||..-|-+- .. .+.+ ...+-+++|+++|+-+|.+-.
T Consensus 120 --~~~~i~~l~~-~GIPV~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE~ 183 (261)
T PF02548_consen 120 --IAETIKALVD-AGIPVMGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLEC 183 (261)
T ss_dssp --GHHHHHHHHH-TT--EEEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEES
T ss_pred --HHHHHHHHHH-CCCcEEEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeeec
Confidence 2345555544 489998887431 00 0111 234445567777777776644
No 301
>PRK08999 hypothetical protein; Provisional
Probab=93.13 E-value=0.87 Score=48.01 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=50.4
Q ss_pred hhhHhcCCceEEecccccccc--ccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 510 PKFRDWGASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 510 ~~l~~~G~~~itihgrtr~g~--~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
....+.|++++.+........ ...+..++.++++++. .++||++-||| |++++.++++.| +|+|.+-+++
T Consensus 240 ~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~-~~~Pv~AiGGI-~~~~~~~~~~~g--~~gva~i~~~ 311 (312)
T PRK08999 240 ARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAG-VPLPVYALGGL-GPGDLEEAREHG--AQGIAGIRGL 311 (312)
T ss_pred HHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh-CCCCEEEECCC-CHHHHHHHHHhC--CCEEEEEEEe
Confidence 345567999997744322211 1233457778877664 48999999999 899999999997 9999886653
No 302
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=93.09 E-value=1.1 Score=45.19 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=74.7
Q ss_pred HHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchh-
Q psy9514 427 QSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNI- 504 (611)
Q Consensus 427 ~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~- 504 (611)
.++++.+++.. +.+|.+-+.+- + .+ ..++..+.++|++++|||+-.... .|..+.+.+++....
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~--D-i~--~~v~~~~~~~Gad~vTvH~~a~~~---------~i~~~~~~~~~~g~~~ 109 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIA--D-AG--KILAKMAFEAGADWVTVICAAHIP---------TIKAALKVAKEFNGEI 109 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeec--C-Cc--HHHHHHHHHCCCCEEEEeCCCCHH---------HHHHHHHHHHHcCCEE
Confidence 35677777763 77888777653 2 22 233434789999999999965322 244444433322111
Q ss_pred hhhc--------chhhHhcCCceEEec-ccccc--ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCC
Q psy9514 505 IHNF--------MPKFRDWGASLITLH-GRTRE--QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573 (611)
Q Consensus 505 ~~~~--------~~~l~~~G~~~itih-grtr~--g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~ 573 (611)
..++ +..+.+.+...+.+| +.... |....+.....++++.. .+.-+...|||+ ++.+......+
T Consensus 110 ~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~--~~~~i~V~gGI~-~~~~~~~~~~~-- 184 (216)
T PRK13306 110 QIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSD--MGFKVSVTGGLV-VEDLKLFKGIP-- 184 (216)
T ss_pred EEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhc--CCCeEEEcCCCC-HhhHHHHhcCC--
Confidence 0011 111222222222111 11110 11111223344455433 233378899995 66665555554
Q ss_pred ccEEEEcHHhhhCCch
Q psy9514 574 ISGVMIGRGALIKPWI 589 (611)
Q Consensus 574 aD~VmIGRgaL~dP~l 589 (611)
+|.+++||++...++.
T Consensus 185 ad~~VvGr~I~~a~dp 200 (216)
T PRK13306 185 VKTFIAGRAIRGAADP 200 (216)
T ss_pred CCEEEECCcccCCCCH
Confidence 9999999999877763
No 303
>KOG1595|consensus
Probab=93.08 E-value=0.064 Score=59.69 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceeccccCCCCCccccCcccc
Q psy9514 59 GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHL 138 (611)
Q Consensus 59 gqnk~r~~~~~~~~~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~~h~ 138 (611)
|-|-.|.-+++.+-.---|+.|-++ .|+-||.|.|.|.+=|..=+-...-+..|--- |+||. .-|-|+ |.
T Consensus 221 gEkARRRDPRkyhYs~tpCPefrkG----~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFA--H~ 290 (528)
T KOG1595|consen 221 GEKARRRDPRKYHYSSTPCPEFRKG----SCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFA--HS 290 (528)
T ss_pred CcccccCCcccccccCccCcccccC----CCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeee--cC
Confidence 3343344446667778899999885 69999999999999887554444446677543 99999 889998 77
Q ss_pred CccCCC
Q psy9514 139 DENGGN 144 (611)
Q Consensus 139 ~~~~~~ 144 (611)
.+..+.
T Consensus 291 ~eqLR~ 296 (528)
T KOG1595|consen 291 PEQLRP 296 (528)
T ss_pred hHHhcc
Confidence 665543
No 304
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=92.97 E-value=1.9 Score=46.39 Aligned_cols=126 Identities=12% Similarity=0.115 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhccceeeeccCCC---------C-cchhhccCCCcccc----------c---c---ccceeeecc-----
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGC---------P-IEFIYKQGSGSGLL----------Q---R---ANLFGVQLC----- 376 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gc---------p-~~~~~~~~~~~~l~----------~---~---~~~~ivQi~----- 376 (611)
+..+|+.+.+ .++|.|+|+++| | .+..-+..+++ |. . + ..++++-+.
T Consensus 154 f~~aA~~a~~-aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~vg~d~v~vRis~~~~~ 231 (338)
T cd02933 154 FRQAARNAIE-AGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHHHH-cCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHHhCCCceEEEECccccC
Confidence 3455544443 689999999888 4 44444444432 11 0 0 114555443
Q ss_pred -----cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC
Q psy9514 377 -----GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK 451 (611)
Q Consensus 377 -----g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~ 451 (611)
+.+.+++.+.++.+. ..|+|.|++..|...... .......++.+++.+++||++-=++
T Consensus 232 ~~~~~~~~~ee~~~~~~~l~-~~g~d~i~vs~g~~~~~~------------~~~~~~~~~~ik~~~~ipvi~~G~i---- 294 (338)
T cd02933 232 NDMGDSDPEATFSYLAKELN-KRGLAYLHLVEPRVAGNP------------EDQPPDFLDFLRKAFKGPLIAAGGY---- 294 (338)
T ss_pred CCCCCCCCHHHHHHHHHHHH-HcCCcEEEEecCCCCCcc------------cccchHHHHHHHHHcCCCEEEECCC----
Confidence 346788888888885 458999999655331111 2233466777888888998774222
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
. .....+.+++.++|+|.+ ||
T Consensus 295 --~-~~~a~~~l~~g~~D~V~~-gR 315 (338)
T cd02933 295 --D-AESAEAALADGKADLVAF-GR 315 (338)
T ss_pred --C-HHHHHHHHHcCCCCEEEe-CH
Confidence 1 223334455566998765 44
No 305
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=92.94 E-value=1.7 Score=47.18 Aligned_cols=115 Identities=13% Similarity=0.109 Sum_probs=74.0
Q ss_pred ccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHH
Q psy9514 414 GSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~ 492 (611)
|.+++.+.+|+ +.+-++.+++.. +.||.+-+-..... ......+.++++..+++++.||--..+.- ..
T Consensus 96 Gs~~~~~~~~~-~~~~~~~vr~~~p~~p~~aNl~~~~~~-~~~~~~~~~~~~~~~adal~l~l~~~qe~-~~-------- 164 (352)
T PRK05437 96 GSQRAALKDPE-LADSFSVVRKVAPDGLLFANLGAVQLY-GYGVEEAQRAVEMIEADALQIHLNPLQEL-VQ-------- 164 (352)
T ss_pred cccHhhccChh-hHHHHHHHHHHCCCceEEeecCccccC-CCCHHHHHHHHHhcCCCcEEEeCccchhh-cC--------
Confidence 44455567787 777888888876 68888866543211 12234566667777899999986432210 00
Q ss_pred HHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH----HHHHHHHhhCCCCcEEE--ecCCCCHHHHHH
Q psy9514 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW----DYIEKCAQLCSPAPLYG--NGDILSYEDYTE 566 (611)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~----~~i~~~~k~~~~iPVIg--nGgI~s~eda~~ 566 (611)
..+..+| +.++.+.+. .++||+. +|.-.|.+++..
T Consensus 165 --------------------------------------p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~s~~~a~~ 205 (352)
T PRK05437 165 --------------------------------------PEGDRDFRGWLDNIAEIVSA-LPVPVIVKEVGFGISKETAKR 205 (352)
T ss_pred --------------------------------------CCCcccHHHHHHHHHHHHHh-hCCCEEEEeCCCCCcHHHHHH
Confidence 1111122 456666554 4899995 677788999999
Q ss_pred HHHcCCCccEEEEc
Q psy9514 567 SLKKSPSISGVMIG 580 (611)
Q Consensus 567 ~l~~G~~aD~VmIG 580 (611)
+.+.| +|+|.|+
T Consensus 206 l~~~G--vd~I~Vs 217 (352)
T PRK05437 206 LADAG--VKAIDVA 217 (352)
T ss_pred HHHcC--CCEEEEC
Confidence 98887 9999884
No 306
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=92.82 E-value=1.3 Score=45.35 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=56.2
Q ss_pred hcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 393 ~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
..||++|=+-.+.- ....|+-...+-..+.+...++.|...+..||++-+-.|+. +...+.+.++.+.++|+++|+
T Consensus 27 ~~G~~ai~~s~~~~---~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g-~~~~~~~~v~~~~~~G~~gv~ 102 (243)
T cd00377 27 RAGFKAIYTSGAGV---AASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYG-NALNVARTVRELEEAGAAGIH 102 (243)
T ss_pred HcCCCEEEeccHHH---HHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCC-CHHHHHHHHHHHHHcCCEEEE
Confidence 45888887643332 11123333333445667777788888888999999998865 446778889999999999999
Q ss_pred EEccc
Q psy9514 473 LHGRT 477 (611)
Q Consensus 473 vhgR~ 477 (611)
+-+..
T Consensus 103 iED~~ 107 (243)
T cd00377 103 IEDQV 107 (243)
T ss_pred EecCC
Confidence 95544
No 307
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=92.74 E-value=0.2 Score=50.71 Aligned_cols=61 Identities=18% Similarity=0.116 Sum_probs=50.4
Q ss_pred ccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHcc
Q psy9514 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~g 596 (611)
+..+..-+.++++.. ..|+|-.|||.|+|.|.++.+.| +|.|++|.-+..+|+-+.++-+.
T Consensus 176 a~~Pv~~e~v~~v~~---~~~LivGGGIrs~E~A~~~a~ag--AD~IVtG~iiee~~~~~~~~v~~ 236 (240)
T COG1646 176 AGDPVPVEMVSRVLS---DTPLIVGGGIRSPEQAREMAEAG--ADTIVTGTIIEEDPDKALETVEA 236 (240)
T ss_pred CCCCcCHHHHHHhhc---cceEEEcCCcCCHHHHHHHHHcC--CCEEEECceeecCHHHHHHHHHH
Confidence 555666677776644 34999999999999999999998 99999999999999877776543
No 308
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.58 E-value=1.5 Score=47.07 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=31.7
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.|+++.+..+++||| .|+|.|++++..+++.| +|+|.+|
T Consensus 129 e~I~~ir~~~p~~~vi-~g~V~t~e~a~~l~~aG--ad~i~vg 168 (326)
T PRK05458 129 NMIQHIKKHLPETFVI-AGNVGTPEAVRELENAG--ADATKVG 168 (326)
T ss_pred HHHHHHHhhCCCCeEE-EEecCCHHHHHHHHHcC--cCEEEEC
Confidence 4566666666556655 67899999999999998 9999987
No 309
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=92.31 E-value=3.4 Score=44.85 Aligned_cols=126 Identities=8% Similarity=0.067 Sum_probs=84.0
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
.++.+..+++.+. ..||+.+-|..|++... .-.+.+++++++++..+.+-+=....=+.+.+.+
T Consensus 143 ~~e~~~~~~~~~~-~~G~~~~Klk~g~~~~~---------------~d~~~v~avRe~~g~~~~l~iDan~~~~~~~A~~ 206 (372)
T COG4948 143 PEEMAAEAARALV-ELGFKALKLKVGVGDGD---------------EDLERVRALREAVGDDVRLMVDANGGWTLEEAIR 206 (372)
T ss_pred CHHHHHHHHHHHH-hcCCceEEecCCCCchH---------------HHHHHHHHHHHHhCCCceEEEeCCCCcCHHHHHH
Confidence 5666666666664 36999999999988221 4567889999998755444332221123356889
Q ss_pred HHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHH
Q psy9514 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 538 (611)
Q Consensus 459 la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~ 538 (611)
++++|++.++.+|- | ...+-+.+
T Consensus 207 ~~~~l~~~~l~~iE-------e--------------------------------------------------P~~~~d~~ 229 (372)
T COG4948 207 LARALEEYGLEWIE-------E--------------------------------------------------PLPPDDLE 229 (372)
T ss_pred HHHHhcccCcceEE-------C--------------------------------------------------CCCccCHH
Confidence 99999998865542 1 12233555
Q ss_pred HHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 539 YIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 539 ~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.++++.+.. ++||.+.=.++|..|+.++++.+ .+|.|++
T Consensus 230 ~~~~l~~~~-~~PIa~gEs~~~~~~~~~l~~~~-a~div~~ 268 (372)
T COG4948 230 GLRELRAAT-STPIAAGESVYTRWDFRRLLEAG-AVDIVQP 268 (372)
T ss_pred HHHHHHhcC-CCCEecCcccccHHHHHHHHHcC-CCCeecC
Confidence 666665543 47888777888888888888887 6777765
No 310
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=92.29 E-value=3.3 Score=46.48 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=96.6
Q ss_pred eeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcccc
Q psy9514 372 GVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIH 450 (611)
Q Consensus 372 ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~ 450 (611)
.+.|||- +++++..+++. |+|.|=+.+-.+++.. =.++.+.+|++.+. -.+|.|-
T Consensus 258 ~vKICGit~~eda~~a~~~-----GaD~lGfIf~~~SpR~----------V~~~~a~~i~~~l~---v~~VgVf------ 313 (454)
T PRK09427 258 ENKVCGLTRPQDAKAAYDA-----GAVYGGLIFVEKSPRY----------VSLEQAQEIIAAAP---LRYVGVF------ 313 (454)
T ss_pred ccccCCCCCHHHHHHHHhC-----CCCEEeeEeCCCCCCC----------CCHHHHHHHHHhCC---CCEEEEE------
Confidence 4577887 56666666544 7777766642221111 13555566665543 1122222
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhh-------cccCchhhhhcchhhHhcCCceEEec
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQL-------CSRDNNIIHNFMPKFRDWGASLITLH 523 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~-------~~~~~~~~~~~~~~l~~~G~~~itih 523 (611)
-+ +....+...+.+.+.|.|.+||-. +.+++..+... ++..+.. +..+.....+++++.+.
T Consensus 314 v~-~~~~~i~~i~~~~~lD~vQLHG~e---------~~~~~~~l~~~~~~~~~iikai~v~--~~~~~~~~~~~d~~LlD 381 (454)
T PRK09427 314 RN-ADIEDIVDIAKQLSLAAVQLHGDE---------DQAYIDALREALPKTCQIWKAISVG--DTLPARDLQHVDRYLLD 381 (454)
T ss_pred eC-CCHHHHHHHHHHcCCCEEEeCCCC---------CHHHHHHHHhhcCCCCeEEEEeecC--chhhhhhhcCCCEEEEc
Confidence 11 234567777889999999999954 23344444321 1111110 00111222357788776
Q ss_pred cccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 524 GRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 524 grtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
. ..|+.....||..+... ...|+|..||+ +++.+.+++.. +.++|=+..|.=..|
T Consensus 382 s--~~GGtG~~~DW~~l~~~----~~~p~iLAGGL-~peNV~~ai~~--~P~gVDVsSGVE~~p 436 (454)
T PRK09427 382 N--GQGGTGQTFDWSLLPGQ----SLDNVLLAGGL-NPDNCQQAAQL--GCAGLDFNSGVESAP 436 (454)
T ss_pred C--CCCCCCCccChHHhhhc----ccCCEEEECCC-CHHHHHHHHhc--CCCEEEeCCcccCCC
Confidence 4 22333445688776532 25799999999 68888888864 478888887765544
No 311
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.25 E-value=1.4 Score=43.79 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=60.7
Q ss_pred CEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCce
Q psy9514 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASL 519 (611)
Q Consensus 440 PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 519 (611)
++..-+|. .+.+.+.+++++|.+.|+..|.|.-|+.
T Consensus 9 ~iiaVir~---~~~~~a~~~~~al~~gGi~~iEiT~~t~----------------------------------------- 44 (196)
T PF01081_consen 9 KIIAVIRG---DDPEDAVPIAEALIEGGIRAIEITLRTP----------------------------------------- 44 (196)
T ss_dssp SEEEEETT---SSGGGHHHHHHHHHHTT--EEEEETTST-----------------------------------------
T ss_pred CEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEecCCc-----------------------------------------
Confidence 55555664 3457889999999999999999877662
Q ss_pred EEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 520 ITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 520 itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
..++.|+.+.++.++ -+||.|-|.|.++++++++.| +++++-= -.||.+.+..+
T Consensus 45 ---------------~a~~~I~~l~~~~p~-~~vGAGTV~~~e~a~~a~~aG--A~FivSP---~~~~~v~~~~~ 98 (196)
T PF01081_consen 45 ---------------NALEAIEALRKEFPD-LLVGAGTVLTAEQAEAAIAAG--AQFIVSP---GFDPEVIEYAR 98 (196)
T ss_dssp ---------------THHHHHHHHHHHHTT-SEEEEES--SHHHHHHHHHHT---SEEEES---S--HHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHCCC-CeeEEEeccCHHHHHHHHHcC--CCEEECC---CCCHHHHHHHH
Confidence 234566666666655 579999999999999999998 9988842 24555554444
No 312
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.16 E-value=1.4 Score=44.15 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=67.1
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+.+..+++.|.+.|+..|-|.-|+.
T Consensus 4 ~~vv~Vir~---~~~~~a~~ia~al~~gGi~~iEit~~tp---------------------------------------- 40 (201)
T PRK06015 4 QPVIPVLLI---DDVEHAVPLARALAAGGLPAIEITLRTP---------------------------------------- 40 (201)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCCc----------------------------------------
Confidence 356666774 3557899999999999999999876652
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
...+.|+++.+.+.+ -+||.|-|.|.++++++++.| +++++.= -.+|.+.+..+
T Consensus 41 ----------------~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aG--A~FivSP---~~~~~vi~~a~ 94 (201)
T PRK06015 41 ----------------AALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAG--SRFIVSP---GTTQELLAAAN 94 (201)
T ss_pred ----------------cHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcC--CCEEECC---CCCHHHHHHHH
Confidence 234566776666643 589999999999999999998 9988742 24555555444
No 313
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.15 E-value=2.4 Score=41.57 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=79.8
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-----chhhhhcchhhH
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-----NNIIHNFMPKFR 513 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-----~~~~~~~~~~l~ 513 (611)
.|+..-+|. .+.+.+..+++.+.+.|+++|.+.-++.. ....|..+....+.. .....+.++.+.
T Consensus 4 ~~~~~i~r~---~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~ 73 (190)
T cd00452 4 QPLVAVLRG---DDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVLTPEQADAAI 73 (190)
T ss_pred CcEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHH
Confidence 456666774 24567889999999999999999766432 122333333322211 111234556777
Q ss_pred hcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 514 ~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
++|++.+..- ..+.+.+. .++.. +++++. |+.|++++.++++.| +|.|.+--.-...|.+++.+
T Consensus 74 ~~Ga~~i~~p----------~~~~~~~~-~~~~~-~~~~i~--gv~t~~e~~~A~~~G--ad~i~~~p~~~~g~~~~~~l 137 (190)
T cd00452 74 AAGAQFIVSP----------GLDPEVVK-AANRA-GIPLLP--GVATPTEIMQALELG--ADIVKLFPAEAVGPAYIKAL 137 (190)
T ss_pred HcCCCEEEcC----------CCCHHHHH-HHHHc-CCcEEC--CcCCHHHHHHHHHCC--CCEEEEcCCcccCHHHHHHH
Confidence 8899887531 12233333 33443 677765 778999999999987 99999853222244556555
Q ss_pred Hc
Q psy9514 594 KE 595 (611)
Q Consensus 594 ~~ 595 (611)
+.
T Consensus 138 ~~ 139 (190)
T cd00452 138 KG 139 (190)
T ss_pred Hh
Confidence 43
No 314
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=92.13 E-value=1.4 Score=44.13 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+.+.++++.|.+.|+..|.|.-|+.
T Consensus 8 ~~liaVlr~---~~~e~a~~~~~al~~~Gi~~iEit~~t~---------------------------------------- 44 (204)
T TIGR01182 8 AKIVPVIRI---DDVDDALPLAKALIEGGLRVLEVTLRTP---------------------------------------- 44 (204)
T ss_pred CCEEEEEec---CCHHHHHHHHHHHHHcCCCEEEEeCCCc----------------------------------------
Confidence 466666774 3557889999999999999999876652
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
..++.|+++.+.+.+ -+||.|-|.|.++++++++.| +++++-= + .+|.+.+..++
T Consensus 45 ----------------~a~~~i~~l~~~~~~-~~vGAGTVl~~~~a~~a~~aG--A~FivsP-~--~~~~v~~~~~~ 99 (204)
T TIGR01182 45 ----------------VALDAIRLLRKEVPD-ALIGAGTVLNPEQLRQAVDAG--AQFIVSP-G--LTPELAKHAQD 99 (204)
T ss_pred ----------------cHHHHHHHHHHHCCC-CEEEEEeCCCHHHHHHHHHcC--CCEEECC-C--CCHHHHHHHHH
Confidence 234566777666644 578999999999999999998 9998632 2 26666665544
No 315
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.08 E-value=1.2 Score=44.55 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=68.1
Q ss_pred CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCC
Q psy9514 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517 (611)
Q Consensus 438 ~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~ 517 (611)
..++..-+|. .+.+.+.++++++.+.|+..|.|.-++.
T Consensus 9 ~~~~~~v~r~---~~~~~~~~~~~a~~~gGi~~iEvt~~~~--------------------------------------- 46 (206)
T PRK09140 9 KLPLIAILRG---ITPDEALAHVGALIEAGFRAIEIPLNSP--------------------------------------- 46 (206)
T ss_pred hCCEEEEEeC---CCHHHHHHHHHHHHHCCCCEEEEeCCCc---------------------------------------
Confidence 3577777784 3457889999999999999998865441
Q ss_pred ceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 518 ~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
...+.|+.+.+.+..--+||.|-|.+.+++..+++.| +|+++.+- .||.+.+...
T Consensus 47 -----------------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aG--A~fivsp~---~~~~v~~~~~ 101 (206)
T PRK09140 47 -----------------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAG--GRLIVTPN---TDPEVIRRAV 101 (206)
T ss_pred -----------------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcC--CCEEECCC---CCHHHHHHHH
Confidence 2234666766666433488999999999999999998 99999873 3444444433
No 316
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.05 E-value=1.4 Score=44.32 Aligned_cols=92 Identities=10% Similarity=0.013 Sum_probs=67.3
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+.+..+++.|.+.|+..|-|.-|+.
T Consensus 13 ~~vi~vir~---~~~~~a~~~~~al~~~Gi~~iEit~~~~---------------------------------------- 49 (213)
T PRK06552 13 NGVVAVVRG---ESKEEALKISLAVIKGGIKAIEVTYTNP---------------------------------------- 49 (213)
T ss_pred CCEEEEEEC---CCHHHHHHHHHHHHHCCCCEEEEECCCc----------------------------------------
Confidence 466666775 3557899999999999999999877652
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCC--cEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPA--PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~i--PVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
...+.|+++.+.+.+- -+||.|-|.|.++++++++.| ++++|- =-.+|.+.+-.+
T Consensus 50 ----------------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aG--A~Fivs---P~~~~~v~~~~~ 106 (213)
T PRK06552 50 ----------------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAG--AQFIVS---PSFNRETAKICN 106 (213)
T ss_pred ----------------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcC--CCEEEC---CCCCHHHHHHHH
Confidence 2345677776665332 379999999999999999998 999882 233455544433
No 317
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=91.99 E-value=4.6 Score=42.58 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCC-Cccceecccc-ccccccChHHHHHHHHHHHhh-cCCCEEEEEEcccc--CCch
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGC-PIEFIYKQGS-GSGLLQRANILQSVITCMNEV-SSLPITVKTRTGIH--KDNN 454 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gC-P~~~v~~~g~-GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~~--~~~~ 454 (611)
+....+.++.+. .+|+.+|-|-=.. | .+.... |..|.....++.+ |++++.+ .+.++.|--|+-.. ...+
T Consensus 87 ~~~v~~tv~~~~-~aG~agi~IEDq~~p---K~cgh~~g~~lv~~ee~~~k-I~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 87 AFNVARTVREME-DAGAAAVHIEDQVLP---KRCGHLPGKELVSREEMVDK-IAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred HHHHHHHHHHHH-HcCCeEEEEecCCCc---cccCCCCCccccCHHHHHHH-HHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 677777777765 4699999884322 3 111112 2233333334444 4444443 36778888887432 2345
Q ss_pred HHHHHHHHHHHcCCCEEEEEc
Q psy9514 455 IIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~Itvhg 475 (611)
++++=+++..++|+|.|-+++
T Consensus 162 eAI~Ra~ay~~AGAD~vfi~g 182 (285)
T TIGR02317 162 AAIERAKAYVEAGADMIFPEA 182 (285)
T ss_pred HHHHHHHHHHHcCCCEEEeCC
Confidence 666667778899999998876
No 318
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.95 E-value=3.4 Score=44.67 Aligned_cols=75 Identities=8% Similarity=-0.026 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++.+.+-++.+.+ .||..+-|..|- +++.-.+.|++|++.+|..+.+.+=....=+...+.+
T Consensus 138 ~~e~~~~~a~~~~~-~Gf~~~Kikvg~----------------~~~~d~~~v~~vRe~~G~~~~l~vDaN~~~~~~~A~~ 200 (352)
T cd03328 138 DDDRLREQLSGWVA-QGIPRVKMKIGR----------------DPRRDPDRVAAARRAIGPDAELFVDANGAYSRKQALA 200 (352)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEeecCC----------------CHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHH
Confidence 56655555544432 588888775431 2455678889999988754333221111113467999
Q ss_pred HHHHHHHcCCCE
Q psy9514 459 FMPKFRDWGASL 470 (611)
Q Consensus 459 la~~l~~aGvd~ 470 (611)
+++.|++.++.+
T Consensus 201 ~~~~l~~~~~~~ 212 (352)
T cd03328 201 LARAFADEGVTW 212 (352)
T ss_pred HHHHHHHhCcch
Confidence 999999887654
No 319
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=91.94 E-value=3.6 Score=44.12 Aligned_cols=131 Identities=15% Similarity=0.157 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhccceeeeccCCC---------Cc-chhhccCCCc---------cccc-------cccceeeecc-----
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGC---------PI-EFIYKQGSGS---------GLLQ-------RANLFGVQLC----- 376 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gc---------p~-~~~~~~~~~~---------~l~~-------~~~~~ivQi~----- 376 (611)
+..+|+.+.+ .++|.|+||++| |. +..-++.++. +++. .+.++.+-+.
T Consensus 156 ~~~aA~~a~~-aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 156 FVAAARRAVE-AGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHH-cCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 4455555544 689999999876 42 2222222221 1111 1345665544
Q ss_pred --cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCch
Q psy9514 377 --GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN 454 (611)
Q Consensus 377 --g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~ 454 (611)
|.+++++.+.++.+++ .|+|.|++..|....... + .+ .+..-...++.+++.+++||.+- | ...
T Consensus 235 ~~g~~~~e~~~ia~~Le~-~gvd~iev~~g~~~~~~~---~--~~--~~~~~~~~~~~ir~~~~iPVi~~---G---~i~ 300 (336)
T cd02932 235 EGGWDLEDSVELAKALKE-LGVDLIDVSSGGNSPAQK---I--PV--GPGYQVPFAERIRQEAGIPVIAV---G---LIT 300 (336)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEECCCCCCcccc---c--CC--CccccHHHHHHHHhhCCCCEEEe---C---CCC
Confidence 3468888888888864 589999998764311110 0 00 01112355677787788898763 2 112
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q psy9514 455 IIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~Itv 473 (611)
....+.+.+.+..+|+|.+
T Consensus 301 t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 301 DPEQAEAILESGRADLVAL 319 (336)
T ss_pred CHHHHHHHHHcCCCCeehh
Confidence 2223334444445888754
No 320
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=91.90 E-value=2.9 Score=44.90 Aligned_cols=115 Identities=11% Similarity=0.083 Sum_probs=69.7
Q ss_pred ccccccccChHHHHHHHHHHHh-hcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHH
Q psy9514 414 GSGSGLLQRANILQSVITCMNE-VSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~-~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~ 492 (611)
|.+++.+.+|+..... +.+++ ..+.|+.+-+-...... .....+.++++..+++++.+|--..+.- ..
T Consensus 89 Gs~~~~~~~~~~~~~~-~~vr~~~~~~p~i~nl~~~~~~~-~~~~~~~~~i~~i~adal~i~ln~~q~~-~~-------- 157 (333)
T TIGR02151 89 GSQRAALKDPETADTF-EVVREEAPNGPLIANIGAPQLVE-GGPEEAQEAIDMIEADALAIHLNVLQEL-VQ-------- 157 (333)
T ss_pred cCchhhccChhhHhHH-HHHHHhCCCCcEEeecCchhhcc-ccHHHHHHHHHHhcCCCEEEcCcccccc-cC--------
Confidence 3445556688876666 77777 45789888654321111 1123445555556788888876322210 00
Q ss_pred HHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH----HHHHHHHhhCCCCcEEE--ecCCCCHHHHHH
Q psy9514 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW----DYIEKCAQLCSPAPLYG--NGDILSYEDYTE 566 (611)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~----~~i~~~~k~~~~iPVIg--nGgI~s~eda~~ 566 (611)
..+..++ +.++.+.+. .++||+. +|.-.+.+++..
T Consensus 158 --------------------------------------p~g~~~f~~~le~i~~i~~~-~~vPVivK~~g~g~~~~~a~~ 198 (333)
T TIGR02151 158 --------------------------------------PEGDRNFKGWLEKIAEICSQ-LSVPVIVKEVGFGISKEVAKL 198 (333)
T ss_pred --------------------------------------CCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHH
Confidence 1111122 556666665 4899985 566689999998
Q ss_pred HHHcCCCccEEEEc
Q psy9514 567 SLKKSPSISGVMIG 580 (611)
Q Consensus 567 ~l~~G~~aD~VmIG 580 (611)
+.+.| +|+|-|+
T Consensus 199 L~~aG--vd~I~Vs 210 (333)
T TIGR02151 199 LADAG--VSAIDVA 210 (333)
T ss_pred HHHcC--CCEEEEC
Confidence 88887 9999886
No 321
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=91.81 E-value=1.3 Score=47.18 Aligned_cols=153 Identities=17% Similarity=0.149 Sum_probs=84.1
Q ss_pred CCeEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhcc-CCCc----cccc-----cccceeeecccC-chH
Q psy9514 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ-GSGS----GLLQ-----RANLFGVQLCGN-NPY 381 (611)
Q Consensus 313 e~~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~-~~~~----~l~~-----~~~~~ivQi~g~-~p~ 381 (611)
+.+++++|.|..+..+...++.+...+.+|++++|.+||.-..-.. +... ++++ ...|+.+.+.-+ +..
T Consensus 92 ~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~~ 171 (310)
T PRK02506 92 NKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDIV 171 (310)
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCHH
Confidence 5789999999999999988888876545899999999995321000 1111 1111 146788877766 445
Q ss_pred HHHHHHHHHHHhcccceEE-ec-----------cCCCccceecccccccccc-ChHHHHHHHHHHHhhc--CCCEEEEEE
Q psy9514 382 VLTKCTQLLEEQMVVDFVD-VN-----------LGCPIEFIYKQGSGSGLLQ-RANILQSVITCMNEVS--SLPITVKTR 446 (611)
Q Consensus 382 ~~~~aA~~l~~~~g~D~IE-LN-----------~gCP~~~v~~~g~GsaLl~-r~~~l~eIv~av~~~~--~~PvtVKiR 446 (611)
.++++++.+. ..++++|. +| -+-|.. ....++|+.=-. -.....++|..+.+.+ .+||+.
T Consensus 172 ~~a~~~~~~~-~~g~~~i~~~nt~~~~~~iD~~~~~~~~-~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipIig--- 246 (310)
T PRK02506 172 HFDQAAAIFN-KFPLAFVNCINSIGNGLVIDPEDETVVI-KPKNGFGGIGGDYIKPTALANVRAFYQRLNPSIQIIG--- 246 (310)
T ss_pred HHHHHHHHhC-cCceEEEEEeccCCCceEEecCCCCccc-cCCCCCCcCCchhccHHHHHHHHHHHHhcCCCCCEEE---
Confidence 5565655443 23555542 23 222311 012223221111 1224456777777766 467654
Q ss_pred ccccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 447 TGIHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 447 ~g~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
.|.-.+.+++.+++ .+|+++|.+-
T Consensus 247 ~GGI~s~~da~e~i----~aGA~~Vqv~ 270 (310)
T PRK02506 247 TGGVKTGRDAFEHI----LCGASMVQVG 270 (310)
T ss_pred ECCCCCHHHHHHHH----HcCCCHHhhh
Confidence 33223333333333 7899988763
No 322
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=91.72 E-value=0.61 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=35.0
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.+.++++.+.++++|||+ |.+.|.+.+.++++.| ||+|-||=
T Consensus 254 ~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G--~d~i~vg~ 295 (475)
T TIGR01303 254 ISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAG--ANIIKVGV 295 (475)
T ss_pred HHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhC--CCEEEECC
Confidence 356677766677899998 8899999999999998 99998663
No 323
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.68 E-value=1 Score=49.91 Aligned_cols=43 Identities=14% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+||++-||| +++++.++++.| +++|.+=|++...++.-..++
T Consensus 364 ~iPVVAIGGI-~~~Ni~~vl~aG--a~GVAVVSAI~~A~DP~aa~~ 406 (437)
T PRK12290 364 GFPTVAIGGI-DQSNAEQVWQCG--VSSLAVVRAITLAEDPQLVIE 406 (437)
T ss_pred CCCEEEECCc-CHHHHHHHHHcC--CCEEEEehHhhcCCCHHHHHH
Confidence 7999999999 899999999997 999999999987766554443
No 324
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=91.65 E-value=6.4 Score=42.68 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=38.6
Q ss_pred cccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC--CchHHHHHHHHHHHcCCCEE
Q psy9514 394 MVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--DNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 394 ~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--~~~~a~~la~~l~~aGvd~I 471 (611)
.||..+-|..|- .++..-.+.|+++++.+|..+ ++++-.+. +...+.++++.|++.++.+|
T Consensus 156 ~Gf~~~KiKvg~---------------~~~~~d~~~v~~~re~~g~~~--~l~~DaN~~~~~~~A~~~~~~l~~~~~~~i 218 (368)
T TIGR02534 156 KRHRSFKLKIGA---------------RDPADDVAHVVAIAKALGDRA--SVRVDVNAAWDERTALHYLPQLADAGVELI 218 (368)
T ss_pred cCcceEEEEeCC---------------CCcHHHHHHHHHHHHhcCCCc--EEEEECCCCCCHHHHHHHHHHHHhcChhhe
Confidence 488887765331 134445678888998886544 34442222 33678899999988776543
No 325
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.62 E-value=0.76 Score=52.14 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
+.|+.+.+.+..--.|+.|.|.|++++..+++.| ||+|.||.
T Consensus 272 ~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aG--Ad~I~vg~ 313 (502)
T PRK07107 272 RTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAG--ADFVKVGI 313 (502)
T ss_pred HHHHHHHHhCCCCceEEeccccCHHHHHHHHHcC--CCEEEECC
Confidence 5566665555322356789999999999999998 99998853
No 326
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.45 E-value=2 Score=45.24 Aligned_cols=39 Identities=13% Similarity=0.261 Sum_probs=32.8
Q ss_pred CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 547 ~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
..++|+.+.||| +.+.+.++...| +|.|.+|.....-|+
T Consensus 241 ~~~i~leAsGGI-t~~ni~~ya~tG--vD~Isvgsl~~sa~~ 279 (288)
T PRK07428 241 NPRVKIEASGNI-TLETIRAVAETG--VDYISSSAPITRSPW 279 (288)
T ss_pred CCCeEEEEECCC-CHHHHHHHHHcC--CCEEEEchhhhCCCc
Confidence 357899999999 699999999987 999999976654443
No 327
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=90.98 E-value=1.6 Score=45.88 Aligned_cols=154 Identities=17% Similarity=0.089 Sum_probs=92.6
Q ss_pred ccCCCeEEEEecCCChhhHHHHHHHHhhhc-cceeeeccCCCCcchhhccC--CCcccc--------c-cccceeeeccc
Q psy9514 310 HESEDLFGVQLCGNNPYVLTKCTQLLEEQM-AVDFVDVNLGCPIEFIYKQG--SGSGLL--------Q-RANLFGVQLCG 377 (611)
Q Consensus 310 h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~-~v~~idln~gcp~~~~~~~~--~~~~l~--------~-~~~~~ivQi~g 377 (611)
++.+.++++||+|.+++.+..+++.+.+.. .+++|++|+|||....+... ...+++ . .+.++.+-+..
T Consensus 87 ~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~ 166 (300)
T TIGR01037 87 EEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP 166 (300)
T ss_pred ccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 444568999999999999999999987653 48999999999986532211 111111 1 14677777764
Q ss_pred CchHHHHHHHHHHHHhcccceEEeccCCC--cccee------cccccccccc--ChHHHHHHHHHHHhhcCCCEEEEEEc
Q psy9514 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCP--IEFIY------KQGSGSGLLQ--RANILQSVITCMNEVSSLPITVKTRT 447 (611)
Q Consensus 378 ~~p~~~~~aA~~l~~~~g~D~IELN~gCP--~~~v~------~~g~GsaLl~--r~~~l~eIv~av~~~~~~PvtVKiR~ 447 (611)
+.+++.+.++.+. .+|+|+|.++.+-+ ....+ ....|+ +.. ......+.+..+++.+++||+.-
T Consensus 167 -~~~~~~~~a~~l~-~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg-~sg~~~~~~~l~~v~~i~~~~~ipvi~~--- 240 (300)
T TIGR01037 167 -NVTDITEIAKAAE-EAGADGLTLINTLRGMKIDIKTGKPILANKTGG-LSGPAIKPIALRMVYDVYKMVDIPIIGV--- 240 (300)
T ss_pred -ChhhHHHHHHHHH-HcCCCEEEEEccCCccccccccCceeeCCCCcc-ccchhhhHHHHHHHHHHHhcCCCCEEEE---
Confidence 4456677777664 46999999863211 00001 011121 111 11234577778888888887653
Q ss_pred cccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 448 GIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 448 g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
|.-.+ .....+.+ .+|+|+|.+
T Consensus 241 GGI~s---~~da~~~l-~~GAd~V~i 262 (300)
T TIGR01037 241 GGITS---FEDALEFL-MAGASAVQV 262 (300)
T ss_pred CCCCC---HHHHHHHH-HcCCCceee
Confidence 22122 22333444 489998875
No 328
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=90.93 E-value=9.2 Score=39.57 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEecC
Q psy9514 266 LTTVGNLPFRRLCKKWGADITCSEM 290 (611)
Q Consensus 266 Mt~~gnlpfRrl~~~~Ga~li~tEm 290 (611)
|.|..+.|+-++....|++++...-
T Consensus 19 ~lTAYD~~~A~~~d~agvd~lLVGD 43 (268)
T COG0413 19 MLTAYDYPFAKLFDQAGVDVLLVGD 43 (268)
T ss_pred EEeccccHHHhhhhhcCCcEEEEec
Confidence 3566789999999999999877653
No 329
>PRK14567 triosephosphate isomerase; Provisional
Probab=90.90 E-value=0.76 Score=47.50 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=40.2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++|+-.|.| +++++.+++... .+||+.||++.| ||.-|.+|-+
T Consensus 201 ~~v~IlYGGSV-~~~N~~~l~~~~-diDG~LVGgasL-~~~~F~~Ii~ 245 (253)
T PRK14567 201 KNIKIVYGGSL-KAENAKDILSLP-DVDGGLIGGASL-KAAEFNEIIN 245 (253)
T ss_pred ccceEEEcCcC-CHHHHHHHHcCC-CCCEEEeehhhh-cHHHHHHHHH
Confidence 36899999999 999999999986 899999999888 8988888864
No 330
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=90.87 E-value=6.5 Score=39.53 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=23.3
Q ss_pred EEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 552 LYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 552 VIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
=|..-++.|+.++.+++..| +|.|-+.
T Consensus 159 kil~As~r~~~ei~~a~~~G--ad~vTv~ 185 (211)
T cd00956 159 KILAASIRNPQHVIEAALAG--ADAITLP 185 (211)
T ss_pred eEEecccCCHHHHHHHHHcC--CCEEEeC
Confidence 34466899999999999988 9999998
No 331
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=90.72 E-value=0.92 Score=51.26 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
++.+..+.+..+++|||+ |+|.|.+++..+++.| +|+|-+|
T Consensus 257 l~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aG--ad~i~vg 297 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIA-GNVATAEAARALIEAG--ADAVKVG 297 (486)
T ss_pred HHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcC--CCEEEEC
Confidence 355666666666889887 9999999999999998 9999875
No 332
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=90.54 E-value=5.9 Score=43.59 Aligned_cols=74 Identities=5% Similarity=0.022 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC--CchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--DNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--~~~~a 456 (611)
+++.+.+.++.+.+..||..|-|..|-+ ++..-.+.|++++++++ . +.+++-.+. +.+.+
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~---------------~~~~di~~v~avRea~~-~--~~l~vDaN~~w~~~~A 229 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVL---------------PGEEEIEAVKALAEAFP-G--ARLRLDPNGAWSLETA 229 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCC---------------CHHHHHHHHHHHHHhCC-C--CcEEEeCCCCcCHHHH
Confidence 6676666665554345999988864421 24445678889998873 2 344442222 34678
Q ss_pred HHHHHHHHHcCCCEE
Q psy9514 457 HNFMPKFRDWGASLI 471 (611)
Q Consensus 457 ~~la~~l~~aGvd~I 471 (611)
.+++++|++ ++.+|
T Consensus 230 ~~~~~~l~~-~l~~i 243 (395)
T cd03323 230 IRLAKELEG-VLAYL 243 (395)
T ss_pred HHHHHhcCc-CCCEE
Confidence 899999988 76654
No 333
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=90.53 E-value=4.1 Score=41.78 Aligned_cols=138 Identities=17% Similarity=0.218 Sum_probs=83.3
Q ss_pred ccCchHHHHHHHHHHHHhcccceEEeccC-CCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEccc----
Q psy9514 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTGI---- 449 (611)
Q Consensus 376 ~g~~p~~~~~aA~~l~~~~g~D~IELN~g-CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g~---- 449 (611)
+|+++..+.+.++.+. .+|+.+|.|.=. |. . .|..+. .++...+=|++++++. +..+.|--|+..
T Consensus 80 yG~~~~~v~~tv~~~~-~aG~agi~IEDq~~~------~-~~~~l~-~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~ 150 (238)
T PF13714_consen 80 YGNDPENVARTVRELE-RAGAAGINIEDQRCG------H-GGKQLV-SPEEMVAKIRAAVDARRDPDFVIIARTDAFLRA 150 (238)
T ss_dssp SSSSHHHHHHHHHHHH-HCT-SEEEEESBSTT------T-STT-B---HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHH
T ss_pred cCchhHHHHHHHHHHH-HcCCcEEEeeccccC------C-CCCcee-CHHHHHHHHHHHHHhccCCeEEEEEeccccccC
Confidence 4566888888888875 579999998644 32 1 233444 4444444444444433 456777778754
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccc
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQ 529 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g 529 (611)
....+++++=+++..++|+|.|-+++-.
T Consensus 151 ~~~~deaI~R~~aY~eAGAD~ifi~~~~---------------------------------------------------- 178 (238)
T PF13714_consen 151 EEGLDEAIERAKAYAEAGADMIFIPGLQ---------------------------------------------------- 178 (238)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEETTSS----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCC----------------------------------------------------
Confidence 2233556666677789999998887643
Q ss_pred cccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 530 RYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 530 ~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
+-+.++++.+.. ++|+..+-. ...-++.++.+.| +..|.+|-.++
T Consensus 179 ------~~~~i~~~~~~~-~~Pl~v~~~-~~~~~~~eL~~lG--v~~v~~~~~~~ 223 (238)
T PF13714_consen 179 ------SEEEIERIVKAV-DGPLNVNPG-PGTLSAEELAELG--VKRVSYGNSLL 223 (238)
T ss_dssp ------SHHHHHHHHHHH-SSEEEEETT-SSSS-HHHHHHTT--ESEEEETSHHH
T ss_pred ------CHHHHHHHHHhc-CCCEEEEcC-CCCCCHHHHHHCC--CcEEEEcHHHH
Confidence 113355555655 688776653 2225666677777 99999986554
No 334
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=90.50 E-value=2.7 Score=42.19 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.|+.-=+|. ++.+++..++++|.+.|+.+|.|.-|+.
T Consensus 13 ~~vI~Vlr~---~~~e~a~~~a~Ali~gGi~~IEITl~sp---------------------------------------- 49 (211)
T COG0800 13 QPVVPVIRG---DDVEEALPLAKALIEGGIPAIEITLRTP---------------------------------------- 49 (211)
T ss_pred CCeeEEEEe---CCHHHHHHHHHHHHHcCCCeEEEecCCC----------------------------------------
Confidence 355555564 4567899999999999999999876662
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEE
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~Vm 578 (611)
...+.|+.+++++. --+||.|=|.|++++.++...| +++++
T Consensus 50 ----------------~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aG--a~fiV 90 (211)
T COG0800 50 ----------------AALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAG--AQFIV 90 (211)
T ss_pred ----------------CHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcC--CCEEE
Confidence 34577888877764 4699999999999999999998 88876
No 335
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.48 E-value=4.2 Score=40.96 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=68.8
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+++..+++.|.+.|++.|-|.-++.
T Consensus 15 ~~~iaV~r~---~~~~~a~~i~~al~~~Gi~~iEitl~~~---------------------------------------- 51 (212)
T PRK05718 15 GPVVPVIVI---NKLEDAVPLAKALVAGGLPVLEVTLRTP---------------------------------------- 51 (212)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHcCCCEEEEecCCc----------------------------------------
Confidence 466666774 4557899999999999999998874441
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
...+.|+++.+.+++ -+||.|-|.+.++++.+++.| ++.++.= -.+|.+.+..++
T Consensus 52 ----------------~~~~~I~~l~~~~p~-~~IGAGTVl~~~~a~~a~~aG--A~FivsP---~~~~~vi~~a~~ 106 (212)
T PRK05718 52 ----------------AALEAIRLIAKEVPE-ALIGAGTVLNPEQLAQAIEAG--AQFIVSP---GLTPPLLKAAQE 106 (212)
T ss_pred ----------------cHHHHHHHHHHHCCC-CEEEEeeccCHHHHHHHHHcC--CCEEECC---CCCHHHHHHHHH
Confidence 234667777666654 689999999999999999998 9998842 345566655544
No 336
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=90.43 E-value=1.4 Score=45.27 Aligned_cols=43 Identities=28% Similarity=0.436 Sum_probs=37.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.++|+-.|.|+. +++.+++..+ .+||+.||++.| ||.-|.+|-
T Consensus 199 ~~~IlYGGSV~~-~N~~~l~~~~-~vDG~LVG~Asl-~~~~f~~Ii 241 (242)
T cd00311 199 KVRILYGGSVNP-ENAAELLAQP-DIDGVLVGGASL-KAESFLDII 241 (242)
T ss_pred ceeEEECCCCCH-HHHHHHhcCC-CCCEEEeehHhh-CHHHHHHHh
Confidence 689999999976 9999999986 899999999999 688887764
No 337
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=90.39 E-value=6.8 Score=39.20 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=31.7
Q ss_pred HHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 428 eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
++++.+++. +.++.+-+.+. +-.++....++.+.++|+|++|||+-.
T Consensus 40 ~~v~~l~~~-~~~v~lD~K~~--Dig~t~~~~~~~~~~~gad~vTvh~~~ 86 (213)
T TIGR01740 40 KIIDELAKL-NKLIFLDLKFA--DIPNTVKLQYESKIKQGADMVNVHGVA 86 (213)
T ss_pred HHHHHHHHc-CCCEEEEEeec--chHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 567777764 34565555543 333455566777889999999999854
No 338
>PRK14017 galactonate dehydratase; Provisional
Probab=90.31 E-value=8.6 Score=41.95 Aligned_cols=96 Identities=8% Similarity=0.040 Sum_probs=56.0
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.++...+++.+++.+.+.++.+.+ .||..+-|..+=+.. . .+ -...+..-.+.|+++++.+|..+.+.+=..
T Consensus 114 i~~~~~~~~~~~~~~~~~a~~~~~-~Gf~~~KiKv~~~~~-~----~~--~~~~~~~d~~~i~avr~~~g~~~~l~vDaN 185 (382)
T PRK14017 114 IRVYSWIGGDRPADVAEAARARVE-RGFTAVKMNGTEELQ-Y----ID--SPRKVDAAVARVAAVREAVGPEIGIGVDFH 185 (382)
T ss_pred eeEeEeCCCCCHHHHHHHHHHHHH-cCCCEEEEcCcCCcc-c----cc--cHHHHHHHHHHHHHHHHHhCCCCeEEEECC
Confidence 344444555678877666655543 489888886431100 0 00 011245567888999998875544333222
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~It 472 (611)
..=+.+++.++++.|++.|+.+|-
T Consensus 186 ~~w~~~~A~~~~~~l~~~~~~~iE 209 (382)
T PRK14017 186 GRVHKPMAKVLAKELEPYRPMFIE 209 (382)
T ss_pred CCCCHHHHHHHHHhhcccCCCeEE
Confidence 111336788999999888877653
No 339
>KOG1040|consensus
Probab=90.26 E-value=0.23 Score=52.99 Aligned_cols=56 Identities=29% Similarity=0.633 Sum_probs=46.4
Q ss_pred CCcccCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceeccccCCCCCccccCccccC
Q psy9514 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLD 139 (611)
Q Consensus 71 ~~~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~~h~~ 139 (611)
.+...+|..|..+ .|.-||.|-|+|+. .+-+ -..|.+|..+|.|--|-.|-|. |.+
T Consensus 74 ~~~~~vcK~~l~g----lC~kgD~C~Flhe~-~~~k------~rec~ff~~~g~c~~~~~c~y~--h~d 129 (325)
T KOG1040|consen 74 SRGKVVCKHWLRG----LCKKGDQCEFLHEY-DLTK------MRECKFFSLFGECTNGKDCPYL--HGD 129 (325)
T ss_pred cCCceeehhhhhh----hhhccCcCcchhhh-hhcc------cccccccccccccccccCCccc--CCC
Confidence 3467899999986 69999999999997 3332 2369999999999999999998 554
No 340
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=90.01 E-value=6.6 Score=42.85 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhccceeeeccCCC---------Cc-chhhccCCCc---------cccc-------cccceeeeccc----
Q psy9514 328 LTKCTQLLEEQMAVDFVDVNLGC---------PI-EFIYKQGSGS---------GLLQ-------RANLFGVQLCG---- 377 (611)
Q Consensus 328 ~~~~a~~l~~~~~v~~idln~gc---------p~-~~~~~~~~~~---------~l~~-------~~~~~ivQi~g---- 377 (611)
+..+|+...+ .++|.|+|+++| |. +..-+..+++ +++. .+.++.+-+..
T Consensus 152 f~~AA~ra~~-aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~ 230 (370)
T cd02929 152 YVDAALRARD-AGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELI 230 (370)
T ss_pred HHHHHHHHHH-cCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhc
Confidence 4555554443 689999999887 44 3333332221 1110 12334443332
Q ss_pred -----CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCC
Q psy9514 378 -----NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452 (611)
Q Consensus 378 -----~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~ 452 (611)
.+.+++.+.++.+++ .+|.|++..|.......... .....+...+++.+++.+++||++-=++
T Consensus 231 ~~~g~~~~~e~~~~~~~l~~--~~D~i~vs~g~~~~~~~~~~-----~~~~~~~~~~~~~ik~~~~~pvi~~G~i----- 298 (370)
T cd02929 231 GPGGIESEGEGVEFVEMLDE--LPDLWDVNVGDWANDGEDSR-----FYPEGHQEPYIKFVKQVTSKPVVGVGRF----- 298 (370)
T ss_pred CCCCCCCHHHHHHHHHHHHh--hCCEEEecCCCccccccccc-----cCCccccHHHHHHHHHHCCCCEEEeCCC-----
Confidence 356777788888864 37999998775321111000 0111223567778888888998764221
Q ss_pred chHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
.......+.+++.++|+|.+ ||
T Consensus 299 -~~~~~~~~~l~~g~~D~V~~-gR 320 (370)
T cd02929 299 -TSPDKMVEVVKSGILDLIGA-AR 320 (370)
T ss_pred -CCHHHHHHHHHcCCCCeeee-ch
Confidence 12223344455566898765 44
No 341
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=89.95 E-value=0.21 Score=30.86 Aligned_cols=12 Identities=42% Similarity=1.212 Sum_probs=10.9
Q ss_pred CCCCCCCCCCcC
Q psy9514 88 TCKYGEKCKFVH 99 (611)
Q Consensus 88 ~C~~g~~C~f~H 99 (611)
.|++|++|.|+|
T Consensus 7 ~C~~~~~C~f~H 18 (19)
T PF14608_consen 7 NCTNGDNCPFSH 18 (19)
T ss_pred CCCCCCcCccCC
Confidence 399999999999
No 342
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=89.94 E-value=4.8 Score=42.91 Aligned_cols=150 Identities=20% Similarity=0.137 Sum_probs=89.5
Q ss_pred eEEEEecCCChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCC-Cccccc---------cccceeeecccCchHHHH
Q psy9514 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS-GSGLLQ---------RANLFGVQLCGNNPYVLT 384 (611)
Q Consensus 315 ~~~vQi~g~~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~-~~~l~~---------~~~~~ivQi~g~~p~~~~ 384 (611)
.++.-..+...+.+...+..+.+...++++.+|..||......+-+ ..+++. ...|+.+-+.= +..++.
T Consensus 98 ~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-~~~di~ 176 (310)
T COG0167 98 NIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP-NITDID 176 (310)
T ss_pred ceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC-CHHHHH
Confidence 3556666766777777777777665589999999999743211111 112211 24788888887 778888
Q ss_pred HHHHHHHHhcccceEEe-cc-C-CC-cc--------ceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEcccc
Q psy9514 385 KCTQLLEEQMVVDFVDV-NL-G-CP-IE--------FIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIH 450 (611)
Q Consensus 385 ~aA~~l~~~~g~D~IEL-N~-g-CP-~~--------~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~ 450 (611)
++|+.+. .+|+|+|=+ |- . -+ .. -....|+.+..+ .....++|+.+...++ +||+- +|.-
T Consensus 177 ~iA~~~~-~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~i--kp~al~~v~~l~~~~~~~ipIIG---vGGI 250 (310)
T COG0167 177 EIAKAAE-EAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPL--KPIALRVVAELYKRLGGDIPIIG---VGGI 250 (310)
T ss_pred HHHHHHH-HcCCcEEEEEeeccccccccccccccccCcCCCCcCcccc--hHHHHHHHHHHHHhcCCCCcEEE---ecCc
Confidence 8888886 468888753 51 1 11 11 111222222211 2456788888888876 77643 3433
Q ss_pred CCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 451 KDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 451 ~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
.+-.++.+ ...+|+++|.|--
T Consensus 251 ~s~~DA~E----~i~aGA~~vQv~T 271 (310)
T COG0167 251 ETGEDALE----FILAGASAVQVGT 271 (310)
T ss_pred CcHHHHHH----HHHcCCchheeee
Confidence 33344443 3467999887743
No 343
>PRK08185 hypothetical protein; Provisional
Probab=89.85 E-value=20 Score=37.77 Aligned_cols=70 Identities=14% Similarity=0.206 Sum_probs=46.9
Q ss_pred hHhcCCceEEe-----ccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 512 FRDWGASLITL-----HGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 512 l~~~G~~~iti-----hgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
+...|++.+.+ ||.-..+ ..+.-+++.++++.+. .++|++.-|++..+ +++.+++..| +.=|=|++.+..
T Consensus 158 ~~~TgvD~LAvaiGt~HG~y~~~-~kp~L~~e~l~~I~~~-~~iPLVlHGgsg~~~e~~~~ai~~G--I~KiNi~T~l~~ 233 (283)
T PRK08185 158 VSRTGVDTLAVAIGTAHGIYPKD-KKPELQMDLLKEINER-VDIPLVLHGGSANPDAEIAESVQLG--VGKINISSDMKY 233 (283)
T ss_pred HHhhCCCEEEeccCcccCCcCCC-CCCCcCHHHHHHHHHh-hCCCEEEECCCCCCHHHHHHHHHCC--CeEEEeChHHHH
Confidence 33446666655 5553221 1233478889988765 48999999998555 5566788877 888888877644
No 344
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=89.82 E-value=9.5 Score=41.84 Aligned_cols=77 Identities=9% Similarity=-0.020 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+++.+.+.++.+. ..||..+-|..|- .++..-.+.|+++++.+|..+.+.+=....=+...+.+
T Consensus 160 ~~~~~~~~a~~~~-~~Gf~~~Kikvg~---------------~~~~~di~~v~avRe~~G~~~~l~vDaN~~w~~~~A~~ 223 (385)
T cd03326 160 DLGRLRDEMRRYL-DRGYTVVKIKIGG---------------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIA 223 (385)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEEeCCC---------------CCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Confidence 5565555555443 2488888886441 12344567889999888654333322211113467889
Q ss_pred HHHHHHHcCCCEE
Q psy9514 459 FMPKFRDWGASLI 471 (611)
Q Consensus 459 la~~l~~aGvd~I 471 (611)
+++.|++.++.+|
T Consensus 224 ~~~~l~~~~~~~i 236 (385)
T cd03326 224 YAKALAPYGLRWY 236 (385)
T ss_pred HHHHhhCcCCCEE
Confidence 9999988887664
No 345
>PLN02979 glycolate oxidase
Probab=89.81 E-value=4 Score=44.38 Aligned_cols=46 Identities=13% Similarity=0.368 Sum_probs=37.4
Q ss_pred ccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 531 YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.+...|+.++.+.+. .++|||. .+|.+.+|+..+++.| ||+|.|+
T Consensus 206 ~~~~ltW~dl~wlr~~-~~~Pviv-KgV~~~~dA~~a~~~G--vd~I~Vs 251 (366)
T PLN02979 206 IDRTLSWKDVQWLQTI-TKLPILV-KGVLTGEDARIAIQAG--AAGIIVS 251 (366)
T ss_pred CCCCCCHHHHHHHHhc-cCCCEEe-ecCCCHHHHHHHHhcC--CCEEEEC
Confidence 3455689999998765 5899884 5567999999999998 9999884
No 346
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=89.79 E-value=13 Score=39.37 Aligned_cols=92 Identities=8% Similarity=0.063 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHHHhcccceEEeccC-CCccceecccc-ccccccChHHHHHHHHHHHhh-cCCCEEEEEEcccc--CCc
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGS-GSGLLQRANILQSVITCMNEV-SSLPITVKTRTGIH--KDN 453 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~g-CP~~~v~~~g~-GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~~--~~~ 453 (611)
++....+.++.+. .+|+-+|-|-=. -| .+.... |..|. .++...+=|++++.+ .+.++.|--|+-.. ...
T Consensus 91 ~~~~v~r~V~~~~-~aGaagi~IEDq~~p---K~cg~~~~~~lv-~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~ 165 (292)
T PRK11320 91 GAFNIARTVKSMI-KAGAAAVHIEDQVGA---KRCGHRPNKEIV-SQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGL 165 (292)
T ss_pred CHHHHHHHHHHHH-HcCCeEEEEecCCCc---cccCCCCCCccc-CHHHHHHHHHHHHHhccCCCeEEEEecCcccccCH
Confidence 6667777777765 469999988322 13 111112 23333 334333444444443 36788888887432 234
Q ss_pred hHHHHHHHHHHHcCCCEEEEEc
Q psy9514 454 NIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 454 ~~a~~la~~l~~aGvd~Itvhg 475 (611)
+++++=+++..++|+|+|-+++
T Consensus 166 deAI~Ra~aY~eAGAD~ifi~~ 187 (292)
T PRK11320 166 DAAIERAQAYVEAGADMIFPEA 187 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEecC
Confidence 5666667778899999998877
No 347
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=89.79 E-value=9 Score=41.50 Aligned_cols=73 Identities=10% Similarity=0.033 Sum_probs=43.2
Q ss_pred cccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCch
Q psy9514 375 LCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNN 454 (611)
Q Consensus 375 i~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~ 454 (611)
..+.+++.+.+.++.+. ..||..|-|.. .+.|+++++.+|..+.+.+=....=+.+
T Consensus 122 ~~~~~~~~~~~~a~~~~-~~Gf~~~KiKv-----------------------~~~v~avre~~G~~~~l~vDaN~~w~~~ 177 (361)
T cd03322 122 ASGRDIPELLEAVERHL-AQGYRAIRVQL-----------------------PKLFEAVREKFGFEFHLLHDVHHRLTPN 177 (361)
T ss_pred CCCCCHHHHHHHHHHHH-HcCCCeEeeCH-----------------------HHHHHHHHhccCCCceEEEECCCCCCHH
Confidence 33445666655554433 23676666532 5678899988865443332221111346
Q ss_pred HHHHHHHHHHHcCCCEE
Q psy9514 455 IIHNFMPKFRDWGASLI 471 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~I 471 (611)
++..+++.|++.++.+|
T Consensus 178 ~A~~~~~~l~~~~l~~i 194 (361)
T cd03322 178 QAARFGKDVEPYRLFWM 194 (361)
T ss_pred HHHHHHHHhhhcCCCEE
Confidence 78899999998887765
No 348
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=89.75 E-value=12 Score=38.87 Aligned_cols=84 Identities=15% Similarity=0.090 Sum_probs=53.0
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+..+.+.+ .|+++|=++.+- |-...-..+.-.++++.+.+.+ .+||.+.+.. .+..++
T Consensus 16 D~~~~~~~i~~l~~-~Gv~gi~~~Gst----------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLIE-AGVDGLVVLGTT----------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECCCC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCC---ccHHHH
Confidence 45666666666643 489998776421 2222223333345555555554 3677766432 244678
Q ss_pred HHHHHHHHHcCCCEEEEEcc
Q psy9514 457 HNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR 476 (611)
.++++.+++.|+++|.+..-
T Consensus 82 i~~a~~a~~~Gad~v~v~pP 101 (281)
T cd00408 82 IELARHAEEAGADGVLVVPP 101 (281)
T ss_pred HHHHHHHHHcCCCEEEECCC
Confidence 99999999999999998654
No 349
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.73 E-value=9.4 Score=41.19 Aligned_cols=96 Identities=7% Similarity=0.065 Sum_probs=54.6
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.++...+.+.+++.+.+.++.+. ..||..|-|..|-+.. ... .-.+++.-.+.|+++++.++..+.+.+=..
T Consensus 113 i~~~~~~~~~~~~~~~~~~~~~~-~~Gf~~~KiKvg~~~~---~~~----~~~~~~~D~~~i~avr~~~g~~~~l~vDaN 184 (352)
T cd03325 113 VRVYSWIGGDRPSDVAEAARARR-EAGFTAVKMNATEELQ---WID----TSKKVDAAVERVAALREAVGPDIDIGVDFH 184 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCCcc---cCC----CHHHHHHHHHHHHHHHHhhCCCCEEEEECC
Confidence 34444444557777655555443 3599998887653210 000 001345567888999998865433322111
Q ss_pred ccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 449 IHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~aGvd~It 472 (611)
..-+...+.++++.|++.|+.+|-
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~iE 208 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFIE 208 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEEE
Confidence 111346788999999888877653
No 350
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=89.73 E-value=12 Score=37.58 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+.+.+.+.++.+.. .+++|+++..- -..+|. ..+.++++.+++.- .||.+-++++ |-.++...
T Consensus 11 ~~~~a~~i~~~~~~--~v~~iKvG~~l------~~~~G~------~~l~~~i~~l~~~~-~~I~~D~K~~--Dig~t~~~ 73 (226)
T PF00215_consen 11 DLEEALRIADELGD--YVDIIKVGTPL------FLAYGL------EALPEIIEELKERG-KPIFLDLKLG--DIGNTVAR 73 (226)
T ss_dssp SHHHHHHHHHHHGG--GSSEEEEEHHH------HHHHCH------HHHHHHHHHHHHTT-SEEEEEEEE---SSHHHHHH
T ss_pred CHHHHHHHHHHhcC--cceEEEEChHH------HhcCCh------hhHHHHHHHHHHhc-CCEeeeeeec--ccchHHHH
Confidence 34566666666643 68888886421 111232 27788888888754 8888888776 44455566
Q ss_pred HHH---HHHHcCCCEEEEEccc
Q psy9514 459 FMP---KFRDWGASLITLHGRT 477 (611)
Q Consensus 459 la~---~l~~aGvd~ItvhgR~ 477 (611)
.++ .+.++|+|++|||+-.
T Consensus 74 ~~~~~~~~~~~gaD~vTv~~~~ 95 (226)
T PF00215_consen 74 YAEAGFAAFELGADAVTVHPFA 95 (226)
T ss_dssp HHHSCHHHHTTTESEEEEEGTT
T ss_pred HHHHhhhhhcCCCcEEEEeccC
Confidence 666 6689999999999975
No 351
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=89.68 E-value=4.8 Score=42.46 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCC
Q psy9514 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGA 517 (611)
Q Consensus 438 ~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~ 517 (611)
..|+.+-+-... +.+.+.++++.+.+.|+++|.+|.......
T Consensus 115 ~~~~~~ql~~~~--~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~------------------------------------ 156 (299)
T cd02809 115 PGPRWFQLYVPR--DREITEDLLRRAEAAGYKALVLTVDTPVLG------------------------------------ 156 (299)
T ss_pred CCCeEEEEeecC--CHHHHHHHHHHHHHcCCCEEEEecCCCCCC------------------------------------
Confidence 368777765432 345667788888999999999987653211
Q ss_pred ceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 518 ~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.. ..|+.++++.+. .++||+.- ++.|++++..+.+.| +|+|.+
T Consensus 157 -------------~~--~~~~~i~~l~~~-~~~pvivK-~v~s~~~a~~a~~~G--~d~I~v 199 (299)
T cd02809 157 -------------RR--LTWDDLAWLRSQ-WKGPLILK-GILTPEDALRAVDAG--ADGIVV 199 (299)
T ss_pred -------------CC--CCHHHHHHHHHh-cCCCEEEe-ecCCHHHHHHHHHCC--CCEEEE
Confidence 00 356777777665 46898875 478999999999987 999977
No 352
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=89.61 E-value=1.9 Score=48.91 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=44.5
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCcc---EEEEcHHhhhCCchHHHH
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS---GVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD---~VmIGRgaL~dP~lf~ei 593 (611)
+..++.++++.+. ..+||++-||| +++++.+++..| ++ +|.++++++..++..+.+
T Consensus 430 ~~g~~~~~~~~~~-~~~Pv~aiGGI-~~~~~~~~~~~G--~~~~~gvav~~~i~~~~d~~~~~ 488 (502)
T PLN02898 430 TIGLDGLREVCEA-SKLPVVAIGGI-SASNAASVMESG--APNLKGVAVVSALFDQEDVLKAT 488 (502)
T ss_pred CCCHHHHHHHHHc-CCCCEEEECCC-CHHHHHHHHHcC--CCcCceEEEEeHHhcCCCHHHHH
Confidence 4467788877654 58999999999 599999999987 78 999999998666554444
No 353
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=89.51 E-value=15 Score=38.92 Aligned_cols=93 Identities=16% Similarity=0.079 Sum_probs=53.1
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccC-CCccceecccccc-ccccChHHHHHHHHHHHhh-cCCCEEEEEEcccc--C
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGS-GLLQRANILQSVITCMNEV-SSLPITVKTRTGIH--K 451 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~g-CP~~~v~~~g~Gs-aLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~~--~ 451 (611)
|+.+. ..+.++.+. .+|+.+|.|-=. -| .+....++ .|....+++ +=|++++++ -+.++.|--|+-.. .
T Consensus 89 G~~~~-v~r~V~~~~-~aGaagi~IEDq~~p---K~cg~~~~k~lv~~ee~~-~kI~Aa~~A~~~~d~~I~ARTDa~~~~ 162 (294)
T TIGR02319 89 GNAMS-VWRATREFE-RVGIVGYHLEDQVNP---KRCGHLEGKRLISTEEMT-GKIEAAVEAREDEDFTIIARTDARESF 162 (294)
T ss_pred CCcHH-HHHHHHHHH-HcCCeEEEEECCCCc---cccCCCCCccccCHHHHH-HHHHHHHHhccCCCeEEEEEecccccC
Confidence 44444 455555554 469999988432 23 22222223 233333333 334444443 35678888887532 2
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
..+++++=+++..++|+|+|-+++
T Consensus 163 g~deaI~Ra~aY~eAGAD~ifi~~ 186 (294)
T TIGR02319 163 GLDEAIRRSREYVAAGADCIFLEA 186 (294)
T ss_pred CHHHHHHHHHHHHHhCCCEEEecC
Confidence 345566667778899999998876
No 354
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=89.47 E-value=8.7 Score=39.59 Aligned_cols=85 Identities=8% Similarity=-0.019 Sum_probs=46.2
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
++..-+...+++.... ++... ..||..+-|.+|- ..+..-.+.+++|++.++..+.+.+=...
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~-~~Gf~~~KiKvg~---------------~~~~~d~~~v~~vr~~~g~~~~l~vDaN~ 136 (263)
T cd03320 74 PVNALLPAGDAAALGE-AKAAY-GGGYRTVKLKVGA---------------TSFEEDLARLRALREALPADAKLRLDANG 136 (263)
T ss_pred ceeEEecCCCHHHHHH-HHHHH-hCCCCEEEEEECC---------------CChHHHHHHHHHHHHHcCCCCeEEEeCCC
Confidence 3333345555544333 33332 2488887775431 12344467788888877654433322221
Q ss_pred cCCchHHHHHHHHHHHcCCCEE
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLI 471 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~I 471 (611)
.-+..++.++++.|++.++.+|
T Consensus 137 ~w~~~~A~~~~~~l~~~~i~~i 158 (263)
T cd03320 137 GWSLEEALAFLEALAAGRIEYI 158 (263)
T ss_pred CCCHHHHHHHHHhhcccCCceE
Confidence 1134678888888888776654
No 355
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.26 E-value=3.5 Score=44.30 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=34.5
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
.+.|+.+.+.+++++|| .|.|-|++-+++++..| ||+|=||=|
T Consensus 139 i~~ik~ik~~~P~~~vI-aGNV~T~e~a~~Li~aG--AD~vKVGIG 181 (346)
T PRK05096 139 VQFVAKAREAWPDKTIC-AGNVVTGEMVEELILSG--ADIVKVGIG 181 (346)
T ss_pred HHHHHHHHHhCCCCcEE-EecccCHHHHHHHHHcC--CCEEEEccc
Confidence 35677777777777765 69999999999999998 999977644
No 356
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=89.23 E-value=11 Score=41.57 Aligned_cols=96 Identities=7% Similarity=0.009 Sum_probs=52.3
Q ss_pred ccCchHHHHHHHHHHHHhcccceEEeccCCCcc---ceecccccc------cc----------ccChHHHHHHHHHHHhh
Q psy9514 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIE---FIYKQGSGS------GL----------LQRANILQSVITCMNEV 436 (611)
Q Consensus 376 ~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~---~v~~~g~Gs------aL----------l~r~~~l~eIv~av~~~ 436 (611)
.+.+++.+.+-++.+. ..||..|-|..|-|-. .....+.|. +. ...++...+.|++|++.
T Consensus 124 ~~~~~~~~~~~a~~~~-~~Gf~~~KiKvg~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~ 202 (404)
T PRK15072 124 NGRDIDELLDDVARHL-ELGYKAIRVQCGVPGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNK 202 (404)
T ss_pred CCCCHHHHHHHHHHHH-HcCCCEEEEecCCCCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhh
Confidence 4456666654444443 3599999998764310 000000000 00 01124456889999998
Q ss_pred cCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE
Q psy9514 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472 (611)
Q Consensus 437 ~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It 472 (611)
+|..+.+.+=....-+.+.+.+++++|++.++.+|-
T Consensus 203 ~G~~~~l~vDaN~~w~~~~A~~~~~~l~~~~l~~iE 238 (404)
T PRK15072 203 FGFDLHLLHDVHHRLTPIEAARLGKSLEPYRLFWLE 238 (404)
T ss_pred hCCCceEEEECCCCCCHHHHHHHHHhccccCCcEEE
Confidence 865444333222112346788999999888876653
No 357
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.15 E-value=4.3 Score=41.20 Aligned_cols=93 Identities=12% Similarity=0.111 Sum_probs=66.1
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+.+..+++.|.+.|+..|-|.-|+..
T Consensus 15 ~~vi~Vvr~---~~~~~a~~~~~al~~gGi~~iEiT~~tp~--------------------------------------- 52 (222)
T PRK07114 15 TGMVPVFYH---ADVEVAKKVIKACYDGGARVFEFTNRGDF--------------------------------------- 52 (222)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---------------------------------------
Confidence 466666774 35578999999999999999999877632
Q ss_pred eEEeccccccccccCCccHHHHHHHH----hhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCA----QLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~----k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
..+.|+++. +..++ -+||.|-|.|.++++++++.| ++++|.= -.+|.+.+..+
T Consensus 53 -----------------a~~~i~~l~~~~~~~~p~-~~vGaGTVl~~e~a~~a~~aG--A~FiVsP---~~~~~v~~~~~ 109 (222)
T PRK07114 53 -----------------AHEVFAELVKYAAKELPG-MILGVGSIVDAATAALYIQLG--ANFIVTP---LFNPDIAKVCN 109 (222)
T ss_pred -----------------HHHHHHHHHHHHHhhCCC-eEEeeEeCcCHHHHHHHHHcC--CCEEECC---CCCHHHHHHHH
Confidence 223344333 22222 379999999999999999998 9988742 25666666655
Q ss_pred cc
Q psy9514 595 EK 596 (611)
Q Consensus 595 ~g 596 (611)
+.
T Consensus 110 ~~ 111 (222)
T PRK07114 110 RR 111 (222)
T ss_pred Hc
Confidence 43
No 358
>PLN02535 glycolate oxidase
Probab=89.09 E-value=5.2 Score=43.64 Aligned_cols=45 Identities=18% Similarity=0.432 Sum_probs=37.6
Q ss_pred cCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.+...|+.|+.+.+. .++||| ..+|.+++|+..+++.| +|+|.+.
T Consensus 207 ~~~~tW~~i~~lr~~-~~~Pvi-vKgV~~~~dA~~a~~~G--vD~I~vs 251 (364)
T PLN02535 207 DASLSWKDIEWLRSI-TNLPIL-IKGVLTREDAIKAVEVG--VAGIIVS 251 (364)
T ss_pred CCCCCHHHHHHHHhc-cCCCEE-EecCCCHHHHHHHHhcC--CCEEEEe
Confidence 455689999998765 589988 57789999999999987 9999884
No 359
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=89.05 E-value=4.5 Score=43.34 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
++.++.+.+.. +.|++..|.|.|++++..+++.| ||+|.+|
T Consensus 125 ~~~i~~i~~~~-p~~~vi~GnV~t~e~a~~l~~aG--ad~I~V~ 165 (321)
T TIGR01306 125 INMIKHIKTHL-PDSFVIAGNVGTPEAVRELENAG--ADATKVG 165 (321)
T ss_pred HHHHHHHHHhC-CCCEEEEecCCCHHHHHHHHHcC--cCEEEEC
Confidence 35566666654 67888899999999999999998 9999877
No 360
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=88.98 E-value=9 Score=38.47 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=77.3
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccc-----------------ccc--CcC
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR-----------------YTK--QAD 487 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr-----------------~~~--~ad 487 (611)
.++++.+++. +.+|.+-+.++ |-.++....++.+.+.|+|++|||+-..... .+. ..+
T Consensus 39 ~~~i~~l~~~-~~~i~~DlK~~--DIg~tv~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~ 115 (216)
T cd04725 39 PEIVKELREL-GFLVFLDLKLG--DIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPG 115 (216)
T ss_pred HHHHHHHHHC-CCcEEEEeecC--chHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCCCCC
Confidence 4667777764 37888777754 3334555566777788999999998642211 000 011
Q ss_pred hhHHHHHhhhcc-cCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCH-----
Q psy9514 488 WDYIEKCAQLCS-RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSY----- 561 (611)
Q Consensus 488 w~~i~~~~~~~~-~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~----- 561 (611)
+..+.+ ... ........++....++|...+...+ -..+.+.+. ...+.+ +..+||.-.
T Consensus 116 ~~~~q~---~~~~~~~~~~~~~~~~a~~~g~~G~V~~~----------~~~~~i~~~--~~~~~~-~ltPGI~~~~~~~d 179 (216)
T cd04725 116 ALDLQE---GIPGSLEDLVERLAKLAREAGVDGVVCGA----------TEPEALRRA--LGPDFL-ILTPGIGAQGSGDD 179 (216)
T ss_pred HHHHHh---hhcCCHHHHHHHHHHHHHHHCCCEEEECC----------cchHHHHHh--hCCCCe-EEcCCcCCCCCccc
Confidence 111111 000 0011122334455555544443211 111222221 122444 667777631
Q ss_pred ----HHHHHHHHcCCCccEEEEcHHhhhCCchHHHH
Q psy9514 562 ----EDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593 (611)
Q Consensus 562 ----eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei 593 (611)
-+..+++..| ++.+.+||+++.-+.....+
T Consensus 180 q~r~~~~~~a~~~g--~~~ivvGR~I~~a~~p~~~~ 213 (216)
T cd04725 180 QKRGGTPEDAIRAG--ADYIVVGRPITQAADPVAAA 213 (216)
T ss_pred cccccCHHHHHHcC--CcEEEEChhhccCCCHHHHH
Confidence 2566677776 99999999999887755444
No 361
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=88.88 E-value=4.3 Score=42.94 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
...+...++.|..++++||++-+-.|+. +.......++.++++|+.+|+|-..
T Consensus 63 ~~e~~~~~~~I~~~~~iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq 115 (292)
T PRK11320 63 LDDVLIDVRRITDACDLPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQ 115 (292)
T ss_pred HHHHHHHHHHHHhccCCCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4455667777777889999999998876 5667788899999999999999654
No 362
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=88.84 E-value=1.4 Score=52.50 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=54.4
Q ss_pred cCCceEEeccccccc---cccCCccHHHHHHHHhhCC--CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCch
Q psy9514 515 WGASLITLHGRTREQ---RYTKQADWDYIEKCAQLCS--PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 515 ~G~~~itihgrtr~g---~~~~~a~~~~i~~~~k~~~--~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
+|++++.+..-.... ....+..|+.++++++... .+||++-||| +++++.++++.| +++|.+-++++.-++.
T Consensus 127 ~gaDYi~~Gpvf~T~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~AiGGI-~~~~~~~~~~~G--a~giAvisai~~a~d~ 203 (755)
T PRK09517 127 ALPDVIGIGPVASTATKPDAPPALGVDGIAEIAAVAQDHGIASVAIGGV-GLRNAAELAATG--IDGLCVVSAIMAAANP 203 (755)
T ss_pred CCCCEEEECCccccCCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEECCC-CHHHHHHHHHcC--CCEEEEehHhhCCCCH
Confidence 358998764432221 1223447888888776553 3999999999 899999999997 9999999999876664
Q ss_pred HH
Q psy9514 590 FQ 591 (611)
Q Consensus 590 f~ 591 (611)
..
T Consensus 204 ~~ 205 (755)
T PRK09517 204 AA 205 (755)
T ss_pred HH
Confidence 43
No 363
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=88.84 E-value=15 Score=38.72 Aligned_cols=48 Identities=21% Similarity=0.185 Sum_probs=37.5
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-+++.++++.+. .++|++.-|+--.+ +++.+++..| +.-|=|++.+..
T Consensus 186 l~~~~l~~I~~~-~~vPLVlHGgSG~~~e~~~~ai~~G--i~KiNi~Tel~~ 234 (283)
T PRK07998 186 IDIPLLKRIAEV-SPVPLVIHGGSGIPPEILRSFVNYK--VAKVNIASDLRK 234 (283)
T ss_pred cCHHHHHHHHhh-CCCCEEEeCCCCCCHHHHHHHHHcC--CcEEEECHHHHH
Confidence 367888888665 58999987776555 6777888887 999999988754
No 364
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=88.78 E-value=3 Score=43.45 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
.++||.+.||| +++.+.++...| +|+|.+|.-....|+
T Consensus 226 ~~i~i~asGGI-t~~ni~~~a~~G--ad~Isvgal~~s~~~ 263 (269)
T cd01568 226 PRVLLEASGGI-TLENIRAYAETG--VDVISTGALTHSAPA 263 (269)
T ss_pred CCeEEEEECCC-CHHHHHHHHHcC--CCEEEEcHHHcCCCc
Confidence 47899999999 699999999987 999999854444444
No 365
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=88.74 E-value=22 Score=37.51 Aligned_cols=48 Identities=13% Similarity=0.166 Sum_probs=35.8
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHhh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.-+|+.++++.+. .++|++.=|+--.+ +++.+++..| +-=|=|++.+-
T Consensus 189 ~L~~~~L~~I~~~-~~iPLVLHGgSG~~~e~~~~ai~~G--i~KiNi~T~l~ 237 (285)
T PRK07709 189 NLGFAEMEQVRDF-TGVPLVLHGGTGIPTADIEKAISLG--TSKINVNTENQ 237 (285)
T ss_pred ccCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHcC--CeEEEeChHHH
Confidence 3478888887665 48999987776655 6777888887 88888887653
No 366
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=88.69 E-value=0.12 Score=51.81 Aligned_cols=37 Identities=32% Similarity=0.723 Sum_probs=28.4
Q ss_pred CCcccCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCC
Q psy9514 71 KPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111 (611)
Q Consensus 71 ~~~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d 111 (611)
......|.-|... .|.-|+.|+|+|+.++-...-.+|
T Consensus 82 dpK~~vcalF~~~----~c~kg~~ckF~h~~ee~r~~eK~D 118 (299)
T COG5252 82 DPKTVVCALFLNK----TCAKGDACKFAHGKEEARKTEKPD 118 (299)
T ss_pred CchhHHHHHhccC----ccccCchhhhhcchHHHhhhcccc
Confidence 3457789988875 699999999999988776643343
No 367
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=88.59 E-value=4.7 Score=43.34 Aligned_cols=40 Identities=13% Similarity=0.188 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+.|+.+.+..+. +.|..|.|-|++++.++++.| ||+|-||
T Consensus 139 ~~ik~ir~~~p~-~~viaGNV~T~e~a~~Li~aG--AD~ikVg 178 (343)
T TIGR01305 139 EFVKLVREAFPE-HTIMAGNVVTGEMVEELILSG--ADIVKVG 178 (343)
T ss_pred HHHHHHHhhCCC-CeEEEecccCHHHHHHHHHcC--CCEEEEc
Confidence 556666565544 566689999999999999998 9999887
No 368
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.41 E-value=0.26 Score=48.40 Aligned_cols=20 Identities=35% Similarity=0.903 Sum_probs=11.5
Q ss_pred CCcceeccccCCCCCccccC
Q psy9514 115 QCYVFLQHGYCPMGIACRFG 134 (611)
Q Consensus 115 ~C~~~~~~G~C~~G~~Crf~ 134 (611)
+|--|...|||-||..|.|+
T Consensus 143 VCKdyk~TGYCGYGDsCKfl 162 (259)
T COG5152 143 VCKDYKETGYCGYGDSCKFL 162 (259)
T ss_pred cccchhhcccccCCchhhhh
Confidence 45555555555555555555
No 369
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.38 E-value=4.9 Score=42.14 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=33.0
Q ss_pred HHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 538 DYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 538 ~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
+.++++++.. .++||.+.||| +++.+.++.+.| +|+|.+|.-.
T Consensus 220 e~l~~~~~~~~~~i~i~AiGGI-t~~ni~~~a~~G--vd~IAvg~l~ 263 (277)
T PRK08072 220 DEIREFVKLVPSAIVTEASGGI-TLENLPAYGGTG--VDYISLGFLT 263 (277)
T ss_pred HHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcC--CCEEEEChhh
Confidence 3444444432 35788899999 799999999998 9999999643
No 370
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.32 E-value=7.1 Score=42.22 Aligned_cols=29 Identities=14% Similarity=0.018 Sum_probs=22.4
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCC
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP 406 (611)
|.+++++.+.++.+. ..|+|.|++..+..
T Consensus 231 g~~~ee~~~i~~~L~-~~GvD~I~Vs~g~~ 259 (353)
T cd04735 231 GIRMEDTLALVDKLA-DKGLDYLHISLWDF 259 (353)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEeccCcc
Confidence 345788888888885 46999999987754
No 371
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.29 E-value=12 Score=40.26 Aligned_cols=85 Identities=7% Similarity=-0.030 Sum_probs=50.3
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a 456 (611)
..+++.+.+.++.+. ..||..+-|..|.. . ..-..+++.-.+.|++|++.+|..+.+.+=....-+...+
T Consensus 118 ~~~~~~~~~~a~~~~-~~Gf~~~Kikvg~~---~------~~~~~~~~~d~~~v~avr~~~g~~~~l~vDan~~~~~~~A 187 (341)
T cd03327 118 PTDLDELPDEAKEYL-KEGYRGMKMRFGYG---P------SDGHAGLRKNVELVRAIREAVGYDVDLMLDCYMSWNLNYA 187 (341)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEECCCCC---C------CcchHHHHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHH
Confidence 346777765555543 24899988875431 0 0000134566788899999886544333222111234678
Q ss_pred HHHHHHHHHcCCCEE
Q psy9514 457 HNFMPKFRDWGASLI 471 (611)
Q Consensus 457 ~~la~~l~~aGvd~I 471 (611)
.+++++|++.++.+|
T Consensus 188 ~~~~~~l~~~~~~~i 202 (341)
T cd03327 188 IKMARALEKYELRWI 202 (341)
T ss_pred HHHHHHhhhcCCccc
Confidence 899999988876543
No 372
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.13 E-value=14 Score=35.28 Aligned_cols=72 Identities=15% Similarity=0.028 Sum_probs=48.7
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-C--CCEEEEEEcccc-CCch
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-S--LPITVKTRTGIH-KDNN 454 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~--~PvtVKiR~g~~-~~~~ 454 (611)
+.+.+.+.++.+.+ .|+++|.++. ++++.+.+.+ + +|+.+++-.+.. ....
T Consensus 11 d~~~~~~~~~~~~~-~gv~gi~~~g------------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~ 65 (201)
T cd00945 11 TLEDIAKLCDEAIE-YGFAAVCVNP------------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTE 65 (201)
T ss_pred CHHHHHHHHHHHHH-hCCcEEEECH------------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHH
Confidence 56667777777643 5899999873 4455554443 3 677776543221 1146
Q ss_pred HHHHHHHHHHHcCCCEEEEEc
Q psy9514 455 IIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 455 ~a~~la~~l~~aGvd~Itvhg 475 (611)
.+.+.++.+.++|++++.++.
T Consensus 66 ~~~~~a~~a~~~Gad~i~v~~ 86 (201)
T cd00945 66 VKVAEVEEAIDLGADEIDVVI 86 (201)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 788999999999999998864
No 373
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=88.10 E-value=2.9 Score=40.90 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=33.3
Q ss_pred ccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEc
Q psy9514 414 GSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvhg 475 (611)
..|-+-|.+|..+.+|.++ +.+||..|.|+|-. --++.|+..|+|+|.=+-
T Consensus 51 ~GGVaRMsDP~~I~eI~~a----VsIPVMAK~RIGHf-------vEAqiLealgVD~IDESE 101 (208)
T PF01680_consen 51 AGGVARMSDPKMIKEIMDA----VSIPVMAKVRIGHF-------VEAQILEALGVDYIDESE 101 (208)
T ss_dssp TTS---S--HHHHHHHHHH-----SSEEEEEEETT-H-------HHHHHHHHTT-SEEEEET
T ss_pred cCCccccCCHHHHHHHHHh----eEeceeecccccee-------ehhhhHHHhCCceecccc
Confidence 3477889999988777665 46899999999832 236789999999987543
No 374
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=88.04 E-value=3 Score=43.00 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
.+++++..+.+. +++||+..+-|.++.++.+....| ||+|.+==++|.+-.+.+-+.
T Consensus 89 Gs~~~l~~v~~~-v~~PvL~KDFIid~~QI~ea~~~G--ADavLLI~~~L~~~~l~~l~~ 145 (247)
T PRK13957 89 GSLEDLKSVSSE-LKIPVLRKDFILDEIQIREARAFG--ASAILLIVRILTPSQIKSFLK 145 (247)
T ss_pred CCHHHHHHHHHh-cCCCEEeccccCCHHHHHHHHHcC--CCEEEeEHhhCCHHHHHHHHH
Confidence 467888887665 589999999999999999999987 999987766664333444333
No 375
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.02 E-value=11 Score=41.12 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=57.9
Q ss_pred hHHHHHHHHhhhccceeeeccCCC---------Cc-chhhccCCCc---------ccc-------ccccceeeecc----
Q psy9514 327 VLTKCTQLLEEQMAVDFVDVNLGC---------PI-EFIYKQGSGS---------GLL-------QRANLFGVQLC---- 376 (611)
Q Consensus 327 ~~~~~a~~l~~~~~v~~idln~gc---------p~-~~~~~~~~~~---------~l~-------~~~~~~ivQi~---- 376 (611)
.+.++|....+ .++|.|+|+++| |. +..-++.+++ +++ ..+.++++-+.
T Consensus 145 ~f~~AA~~a~~-aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~ 223 (361)
T cd04747 145 AFARAAADARR-LGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQ 223 (361)
T ss_pred HHHHHHHHHHH-cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccc
Confidence 34566655544 689999999887 43 2222322221 111 11345555444
Q ss_pred -------cCchHHHHHHHHHHHHhcccceEEeccC-CCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEE
Q psy9514 377 -------GNNPYVLTKCTQLLEEQMVVDFVDVNLG-CPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVK 444 (611)
Q Consensus 377 -------g~~p~~~~~aA~~l~~~~g~D~IELN~g-CP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVK 444 (611)
|.+++++.+.++.+. ..|+|.|++-.+ +... .. . |. . ..+.+.+++.+++||.+-
T Consensus 224 ~~~~~~~g~~~~e~~~~~~~l~-~~gvd~i~vs~g~~~~~-~~-~--~~----~----~~~~~~~k~~~~~pv~~~ 286 (361)
T cd04747 224 QDYTARLADTPDELEALLAPLV-DAGVDIFHCSTRRFWEP-EF-E--GS----E----LNLAGWTKKLTGLPTITV 286 (361)
T ss_pred cccccCCCCCHHHHHHHHHHHH-HcCCCEEEecCCCccCC-Cc-C--cc----c----hhHHHHHHHHcCCCEEEE
Confidence 356777778887775 458999887654 1100 11 1 11 1 234566777788898774
No 376
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=88.00 E-value=6.2 Score=41.10 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.+||++.||| +++.+.++.+.| +|++.+|
T Consensus 222 ~ipi~AsGGI-~~~ni~~~a~~G--vd~Isvg 250 (265)
T TIGR00078 222 RVLLEASGGI-TLDNLEEYAETG--VDVISSG 250 (265)
T ss_pred CCcEEEECCC-CHHHHHHHHHcC--CCEEEeC
Confidence 4899999999 699999999987 9999996
No 377
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=87.82 E-value=3.9 Score=42.40 Aligned_cols=103 Identities=11% Similarity=0.163 Sum_probs=68.9
Q ss_pred CCCEEEEEEc-----cccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhh
Q psy9514 438 SLPITVKTRT-----GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKF 512 (611)
Q Consensus 438 ~~PvtVKiR~-----g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l 512 (611)
++||+.-+.- |+-....+..++++.++++|+++|.|..-..
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~---------------------------------- 94 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDER---------------------------------- 94 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccc----------------------------------
Confidence 4788776643 2211223567899999999999997744221
Q ss_pred HhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHH
Q psy9514 513 RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592 (611)
Q Consensus 513 ~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~e 592 (611)
|. ..+++.+..+.+. +++||+.--=|.++.++++....| +|+|.+.=.+|....+-+-
T Consensus 95 ------------------~f-~g~~~~l~~v~~~-v~iPvl~kdfi~~~~qi~~a~~~G--AD~VlLi~~~l~~~~l~~l 152 (260)
T PRK00278 95 ------------------FF-QGSLEYLRAARAA-VSLPVLRKDFIIDPYQIYEARAAG--ADAILLIVAALDDEQLKEL 152 (260)
T ss_pred ------------------cC-CCCHHHHHHHHHh-cCCCEEeeeecCCHHHHHHHHHcC--CCEEEEEeccCCHHHHHHH
Confidence 11 1346777776554 689999877788888999999987 9999888666643344443
Q ss_pred HHcc
Q psy9514 593 IKEK 596 (611)
Q Consensus 593 i~~g 596 (611)
+..-
T Consensus 153 i~~a 156 (260)
T PRK00278 153 LDYA 156 (260)
T ss_pred HHHH
Confidence 3333
No 378
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=87.66 E-value=8.9 Score=39.84 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=68.6
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE-EccccccccccCcChhHHHH
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL-HGRTREQRYTKQADWDYIEK 493 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv-hgR~r~qr~~~~adw~~i~~ 493 (611)
.|+..+.+..++..+ . ..+.||.+|.-+. .+.++....+..+...|..-|.+ |.++.. |.
T Consensus 114 I~s~~~~n~~LL~~~----a-~~gkPVilk~G~~--~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~--y~---------- 174 (260)
T TIGR01361 114 IGARNMQNFELLKEV----G-KQGKPVLLKRGMG--NTIEEWLYAAEYILSSGNGNVILCERGIRT--FE---------- 174 (260)
T ss_pred ECcccccCHHHHHHH----h-cCCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEECCCCC--CC----------
Confidence 367778887766433 2 2589999985543 34567778888888889854444 532311 00
Q ss_pred HhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEE-ecCCCC-----HHHHHHH
Q psy9514 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG-NGDILS-----YEDYTES 567 (611)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIg-nGgI~s-----~eda~~~ 567 (611)
+......|+..+..+.+.+ ++||+. .+-... +..+..+
T Consensus 175 -----------------------------------~~~~~~~dl~~i~~lk~~~-~~pV~~ds~Hs~G~r~~~~~~~~aA 218 (260)
T TIGR01361 175 -----------------------------------KATRNTLDLSAVPVLKKET-HLPIIVDPSHAAGRRDLVIPLAKAA 218 (260)
T ss_pred -----------------------------------CCCcCCcCHHHHHHHHHhh-CCCEEEcCCCCCCccchHHHHHHHH
Confidence 0012235777777776544 789998 444333 5666677
Q ss_pred HHcCCCccEEEEc
Q psy9514 568 LKKSPSISGVMIG 580 (611)
Q Consensus 568 l~~G~~aD~VmIG 580 (611)
+..| +||+||=
T Consensus 219 va~G--a~gl~iE 229 (260)
T TIGR01361 219 IAAG--ADGLMIE 229 (260)
T ss_pred HHcC--CCEEEEE
Confidence 8887 9998875
No 379
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.51 E-value=5.9 Score=42.41 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=69.9
Q ss_pred ccccccccChHHHHHHHHHHHhhcC-CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHH
Q psy9514 414 GSGSGLLQRANILQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492 (611)
Q Consensus 414 g~GsaLl~r~~~l~eIv~av~~~~~-~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~ 492 (611)
|.+++.+.+|+.. .-++.++.... .|+.+-+-..... ......+.+.++..+++++.+|--..+.. ..
T Consensus 88 Gs~~~~~~~~e~~-~~~~~vr~~~~~~p~~~Nl~~~~~~-~~~~~~~~~~i~~~~adalel~l~~~q~~-~~-------- 156 (326)
T cd02811 88 GSQRAALEDPELA-ESFTVVREAPPNGPLIANLGAVQLN-GYGVEEARRAVEMIEADALAIHLNPLQEA-VQ-------- 156 (326)
T ss_pred cCchhhccChhhh-hHHHHHHHhCCCceEEeecCccccC-CCCHHHHHHHHHhcCCCcEEEeCcchHhh-cC--------
Confidence 4444455567755 67777777664 8877765432110 11233455566667889999986321110 00
Q ss_pred HHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccH----HHHHHHHhhCCCCcEEE--ecCCCCHHHHHH
Q psy9514 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW----DYIEKCAQLCSPAPLYG--NGDILSYEDYTE 566 (611)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~----~~i~~~~k~~~~iPVIg--nGgI~s~eda~~ 566 (611)
..+..++ +.++.+.+. .++||+. +|.-.|.+++..
T Consensus 157 --------------------------------------~~~~~df~~~~~~i~~l~~~-~~vPVivK~~g~g~s~~~a~~ 197 (326)
T cd02811 157 --------------------------------------PEGDRDFRGWLERIEELVKA-LSVPVIVKEVGFGISRETAKR 197 (326)
T ss_pred --------------------------------------CCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCCCHHHHHH
Confidence 1111223 456666654 4899985 676689999998
Q ss_pred HHHcCCCccEEEEc
Q psy9514 567 SLKKSPSISGVMIG 580 (611)
Q Consensus 567 ~l~~G~~aD~VmIG 580 (611)
+.+.| +|+|.|+
T Consensus 198 l~~~G--vd~I~vs 209 (326)
T cd02811 198 LADAG--VKAIDVA 209 (326)
T ss_pred HHHcC--CCEEEEC
Confidence 88887 9999885
No 380
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=87.31 E-value=13 Score=37.69 Aligned_cols=66 Identities=9% Similarity=0.055 Sum_probs=38.9
Q ss_pred cCCceE-EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 515 WGASLI-TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 515 ~G~~~i-tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
+|++.| .+-||-.+.+..+..-...+..+......-.-|..-.+.+++++.++...| ||.|-|.=.
T Consensus 125 aGa~yvsPyvgRi~d~g~D~~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~a~~~G--~d~vTvp~~ 191 (222)
T PRK12656 125 AGADYLAPYYNRMENLNIDSNAVIGQLAEAIDRENSDSKILAASFKNVAQVNKAFALG--AQAVTAGPD 191 (222)
T ss_pred CCCCEEecccchhhhcCCCHHHHHHHHHHHHHhcCCCCEEEEEecCCHHHHHHHHHcC--CCEEecCHH
Confidence 455555 234444332233322233334444333233456677899999999999998 999998833
No 381
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=87.28 E-value=5.1 Score=42.29 Aligned_cols=54 Identities=19% Similarity=0.376 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 422 r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
....+...++.|..++++||++-+-.|+-+.. .....++.++++|+.+|+|-..
T Consensus 59 ~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~-~v~~tV~~~~~aGvagi~IEDq 112 (290)
T TIGR02321 59 SMSTHLEMMRAIASTVSIPLIADIDTGFGNAV-NVHYVVPQYEAAGASAIVMEDK 112 (290)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCCcH-HHHHHHHHHHHcCCeEEEEeCC
Confidence 34456667777788889999999998876654 5778899999999999999654
No 382
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=87.06 E-value=7.1 Score=41.14 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 422 r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
....+.+.++.|..++++||++-+-.|+.. .......++.++++|+.+|+|-...
T Consensus 57 t~~e~~~~~~~I~~~~~iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~ 111 (285)
T TIGR02317 57 TLDEVAEDARRITRVTDLPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQV 111 (285)
T ss_pred CHHHHHHHHHHHHhccCCCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCC
Confidence 344556667777778899999999888765 5667788999999999999996643
No 383
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=87.04 E-value=26 Score=37.90 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=37.8
Q ss_pred cc-cceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC--CchHHHHHHHHHHHcCCCE
Q psy9514 394 MV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--DNNIIHNFMPKFRDWGASL 470 (611)
Q Consensus 394 ~g-~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--~~~~a~~la~~l~~aGvd~ 470 (611)
.| |..|-|-.|- .+++.-.+.|+++++.++..+ ++++-... +...+.++++.|++.++.+
T Consensus 156 ~G~f~~~KiKvg~---------------~~~~~d~~~v~avr~~~g~~~--~l~iDaN~~~~~~~A~~~~~~l~~~~~~~ 218 (365)
T cd03318 156 AGRHRRFKLKMGA---------------RPPADDLAHVEAIAKALGDRA--SVRVDVNQAWDESTAIRALPRLEAAGVEL 218 (365)
T ss_pred CCCceEEEEEeCC---------------CChHHHHHHHHHHHHHcCCCc--EEEEECCCCCCHHHHHHHHHHHHhcCcce
Confidence 36 8888775431 123444577788888876433 44442221 3467889999999988655
Q ss_pred E
Q psy9514 471 I 471 (611)
Q Consensus 471 I 471 (611)
|
T Consensus 219 i 219 (365)
T cd03318 219 I 219 (365)
T ss_pred e
Confidence 4
No 384
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=87.03 E-value=3.3 Score=42.49 Aligned_cols=54 Identities=17% Similarity=0.287 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
...+...++.|..++++||+|-+-.|+.++.......++.++++|+.+|+|-..
T Consensus 54 ~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq 107 (238)
T PF13714_consen 54 LTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQ 107 (238)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESB
T ss_pred HHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeecc
Confidence 344567777888888999999999998766778889999999999999999654
No 385
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=86.97 E-value=15 Score=38.63 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=53.6
Q ss_pred ccCchHHHHHHHHHHHHhcccceEEe-------ccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 376 CGNNPYVLTKCTQLLEEQMVVDFVDV-------NLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 376 ~g~~p~~~~~aA~~l~~~~g~D~IEL-------N~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
+|+ +...++.++.+. .+|..+|-| -|||= -|..+..-.+.+.+|-.++...-+.++.+--|+-
T Consensus 89 fG~-~~nvartV~~~~-~aG~agi~iEDq~~pk~cgh~--------~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTd 158 (289)
T COG2513 89 FGE-ALNVARTVRELE-QAGAAGIHIEDQVGPKRCGHL--------PGKELVSIDEMVDRIKAAVEARRDPDFVIIARTD 158 (289)
T ss_pred CCc-HHHHHHHHHHHH-HcCcceeeeeecccchhcCCC--------CCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehH
Confidence 344 556666666654 468888877 23331 1233333333343433333333367788777763
Q ss_pred c--cCCchHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 449 I--HKDNNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 449 ~--~~~~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
. .+..+.+++=+++..++|+|+|-.++..
T Consensus 159 a~~~~~ld~AI~Ra~AY~eAGAD~if~~al~ 189 (289)
T COG2513 159 ALLVEGLDDAIERAQAYVEAGADAIFPEALT 189 (289)
T ss_pred HHHhccHHHHHHHHHHHHHcCCcEEccccCC
Confidence 1 1234667777788899999998877754
No 386
>PRK06852 aldolase; Validated
Probab=86.90 E-value=11 Score=40.22 Aligned_cols=52 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred HHHHHHHHhhCCCCcEEEecCCC-CHHHHHH----HHHcCCCccEEEEcHHhhhCCch
Q psy9514 537 WDYIEKCAQLCSPAPLYGNGDIL-SYEDYTE----SLKKSPSISGVMIGRGALIKPWI 589 (611)
Q Consensus 537 ~~~i~~~~k~~~~iPVIgnGgI~-s~eda~~----~l~~G~~aD~VmIGRgaL~dP~l 589 (611)
-+.+++++....++||+..||=. +.+++.+ .++.+ ++.||++||-..-.|.-
T Consensus 218 ~e~f~~vv~~~g~vpVviaGG~k~~~~e~L~~v~~ai~~a-Ga~Gv~~GRNIfQ~~~p 274 (304)
T PRK06852 218 AELFKEAVLAAGRTKVVCAGGSSTDPEEFLKQLYEQIHIS-GASGNATGRNIHQKPLD 274 (304)
T ss_pred HHHHHHHHHhCCCCcEEEeCCCCCCHHHHHHHHHHHHHHc-CCceeeechhhhcCCCc
Confidence 35556666655589988777655 5444544 44523 49999999999988643
No 387
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=86.80 E-value=8.8 Score=41.92 Aligned_cols=45 Identities=13% Similarity=0.389 Sum_probs=37.1
Q ss_pred cCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.+..+|+.|+.+.+. .++||| ..+|.+++|+..+++.| ||+|.|.
T Consensus 208 ~~~~tW~di~wlr~~-~~~Pii-vKgV~~~~dA~~a~~~G--vd~I~Vs 252 (367)
T PLN02493 208 DRTLSWKDVQWLQTI-TKLPIL-VKGVLTGEDARIAIQAG--AAGIIVS 252 (367)
T ss_pred CCCCCHHHHHHHHhc-cCCCEE-eecCCCHHHHHHHHHcC--CCEEEEC
Confidence 455689999998764 589988 45667999999999998 9999884
No 388
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=86.54 E-value=4.2 Score=42.25 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEE-------EEccccccccccCcChhHHHHHh
Q psy9514 424 NILQSVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT-------LHGRTREQRYTKQADWDYIEKCA 495 (611)
Q Consensus 424 ~~l~eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~It-------vhgR~r~qr~~~~adw~~i~~~~ 495 (611)
+.+.++.+.+--++ +.||..-+-. .|..-....+.+.|.+.|...|. +.|..|+.. ...+..|-.|+
T Consensus 66 ~iv~em~~eiLp~v~~tPViaGv~a--tDP~~~~~~fl~~lk~~Gf~GV~NfPTvgliDG~fR~~L--Ee~Gmgy~~EV- 140 (268)
T PF09370_consen 66 EIVMEMAREILPVVKDTPVIAGVCA--TDPFRDMDRFLDELKELGFSGVQNFPTVGLIDGQFRQNL--EETGMGYDREV- 140 (268)
T ss_dssp HHHHHHHHHHGGG-SSS-EEEEE-T--T-TT--HHHHHHHHHHHT-SEEEE-S-GGG--HHHHHHH--HHTT--HHHHH-
T ss_pred HHHHHHHHhhhhhccCCCEEEEecC--cCCCCcHHHHHHHHHHhCCceEEECCcceeeccHHHHHH--HhcCCCHHHHH-
Confidence 46666666666555 4898887542 33334567899999999999876 333333221 11122332332
Q ss_pred hhcccCchh---------hhhcchhhHhcCCceEEec-cccccccccCCc---cHH----H---HHHHHhhC-CCCcEE-
Q psy9514 496 QLCSRDNNI---------IHNFMPKFRDWGASLITLH-GRTREQRYTKQA---DWD----Y---IEKCAQLC-SPAPLY- 553 (611)
Q Consensus 496 ~~~~~~~~~---------~~~~~~~l~~~G~~~itih-grtr~g~~~~~a---~~~----~---i~~~~k~~-~~iPVI- 553 (611)
++++.-++. ..+.+..+.++|+|.|.+| |.|..|. .+.. .++ . +.+.++.. +++-++
T Consensus 141 emi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~-~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~ 219 (268)
T PF09370_consen 141 EMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGGS-IGAKTALSLEEAAERIQEIFDAARAVNPDIIVLC 219 (268)
T ss_dssp HHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS-----------S--HHHHHHHHHHHHHHHHCC-TT-EEEE
T ss_pred HHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCCC-cCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 222221111 2345678899999999887 4444432 2211 121 1 22222222 344444
Q ss_pred EecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 554 GNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 554 gnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
-.|-|.+|+|++.+++.++++++..=|..
T Consensus 220 hGGPI~~p~D~~~~l~~t~~~~Gf~G~Ss 248 (268)
T PF09370_consen 220 HGGPIATPEDAQYVLRNTKGIHGFIGASS 248 (268)
T ss_dssp ECTTB-SHHHHHHHHHH-TTEEEEEESTT
T ss_pred eCCCCCCHHHHHHHHhcCCCCCEEecccc
Confidence 56679999999999998845899876643
No 389
>KOG1492|consensus
Probab=86.24 E-value=0.44 Score=47.48 Aligned_cols=55 Identities=29% Similarity=0.692 Sum_probs=34.0
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceeccccCCCCCccccCccccCcc
Q psy9514 74 DCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDEN 141 (611)
Q Consensus 74 ~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~~h~~~~ 141 (611)
.-+|+.|+.+ .|.-.+.|..+|.+. |.- -..|.+| ..|.|. ...|||+.-|..|+
T Consensus 233 kticpkflng----rcnkaedcnlsheld------prr-ipacryf-llgkcn-npncryvhihysen 287 (377)
T KOG1492|consen 233 KTICPKFLNG----RCNKAEDCNLSHELD------PRR-IPACRYF-LLGKCN-NPNCRYVHIHYSEN 287 (377)
T ss_pred cccChHHhcC----ccCchhcCCcccccC------ccc-cchhhhh-hhccCC-CCCceEEEEeecCC
Confidence 3345555443 355555555555443 112 2478888 579996 47899999999875
No 390
>PRK08227 autoinducer 2 aldolase; Validated
Probab=86.21 E-value=6.7 Score=40.87 Aligned_cols=67 Identities=21% Similarity=0.288 Sum_probs=44.0
Q ss_pred chhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCC-CHHHHH----HHHHcCCCccEEEEcHHh
Q psy9514 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL-SYEDYT----ESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 509 ~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~-s~eda~----~~l~~G~~aD~VmIGRga 583 (611)
+....|.|+|.|-+. |++ +.+++++.. .++||+..||=. +.+++. +.++.| +.||++||-.
T Consensus 164 aRiaaELGADiVK~~-------y~~----~~f~~vv~a-~~vPVviaGG~k~~~~~~L~~v~~ai~aG--a~Gv~~GRNI 229 (264)
T PRK08227 164 TRIAAEMGAQIIKTY-------YVE----EGFERITAG-CPVPIVIAGGKKLPERDALEMCYQAIDEG--ASGVDMGRNI 229 (264)
T ss_pred HHHHHHHcCCEEecC-------CCH----HHHHHHHHc-CCCcEEEeCCCCCCHHHHHHHHHHHHHcC--Cceeeechhh
Confidence 345566777776321 443 456666664 589999888765 444444 445555 9999999999
Q ss_pred hhCCch
Q psy9514 584 LIKPWI 589 (611)
Q Consensus 584 L~dP~l 589 (611)
.-.|+-
T Consensus 230 fQ~~~p 235 (264)
T PRK08227 230 FQSEHP 235 (264)
T ss_pred hccCCH
Confidence 887653
No 391
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=86.19 E-value=12 Score=40.75 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=40.1
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE----cHHhhhCC
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKP 587 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI----GRgaL~dP 587 (611)
+...|+.+..+.+. .++||+.-| |.+++|+..+++.| +|+|.| ||.+..-|
T Consensus 206 ~~~~~~~l~~lr~~-~~~PvivKg-v~~~~dA~~a~~~G--~d~I~vsnhGGr~ld~~~ 260 (351)
T cd04737 206 QKLSPADIEFIAKI-SGLPVIVKG-IQSPEDADVAINAG--ADGIWVSNHGGRQLDGGP 260 (351)
T ss_pred CCCCHHHHHHHHHH-hCCcEEEec-CCCHHHHHHHHHcC--CCEEEEeCCCCccCCCCc
Confidence 34589999888765 489999765 89999999999987 999998 55544444
No 392
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.89 E-value=4 Score=42.84 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=28.7
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
.++|+++.||| +++.+.++...| +|+|.+|.-
T Consensus 232 ~~i~leAsGGI-t~~ni~~~a~tG--vD~Isvg~l 263 (277)
T PRK05742 232 GRAKLEASGGI-NESTLRVIAETG--VDYISIGAM 263 (277)
T ss_pred CCCcEEEECCC-CHHHHHHHHHcC--CCEEEEChh
Confidence 37899999999 699999999987 999999953
No 393
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=85.64 E-value=5.9 Score=41.73 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 424 ~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
..+...++.|..++.+||++-+-.| .+.......++.++++|+.+|+|-..
T Consensus 64 ~e~~~~~~~I~~a~~~Pv~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq 114 (285)
T TIGR02320 64 TQRLDVVEFMFDVTTKPIILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDK 114 (285)
T ss_pred HHHHHHHHHHHhhcCCCEEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEecc
Confidence 3444567778888899999998888 45567788899999999999999443
No 394
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.51 E-value=12 Score=38.80 Aligned_cols=105 Identities=16% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCC-CEEEEE-ccccccccccCcChhHHHH
Q psy9514 416 GSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGA-SLITLH-GRTREQRYTKQADWDYIEK 493 (611)
Q Consensus 416 GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGv-d~Itvh-gR~r~qr~~~~adw~~i~~ 493 (611)
|+..+.+..++..+-+ .+.||.+| .|......+....++.+.+.|. +.+-+| |.+.-..
T Consensus 105 gs~~~~n~~LL~~va~-----tgkPVilk--~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~------------ 165 (250)
T PRK13397 105 GARNMQNFEFLKTLSH-----IDKPILFK--RGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDV------------ 165 (250)
T ss_pred CcccccCHHHHHHHHc-----cCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCC------------
Q ss_pred HhhhcccCchhhhhcchhhHhcCCceEEeccccccccccC-CccHHHHHHHHhhCCCCcEEEe----cCCCC--HHHHHH
Q psy9514 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK-QADWDYIEKCAQLCSPAPLYGN----GDILS--YEDYTE 566 (611)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~-~a~~~~i~~~~k~~~~iPVIgn----GgI~s--~eda~~ 566 (611)
+.. ..|+..+..+.+.+ ++|||.. +|.+. +.-+..
T Consensus 166 -------------------------------------~~~n~~dl~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~A 207 (250)
T PRK13397 166 -------------------------------------ETRNMLDIMAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKI 207 (250)
T ss_pred -------------------------------------ccccccCHHHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHH
Q ss_pred HHHcCCCccEEEE
Q psy9514 567 SLKKSPSISGVMI 579 (611)
Q Consensus 567 ~l~~G~~aD~VmI 579 (611)
++..| +||+||
T Consensus 208 AvA~G--AdGl~I 218 (250)
T PRK13397 208 AKAVG--ANGIMM 218 (250)
T ss_pred HHHhC--CCEEEE
No 395
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.46 E-value=8 Score=40.62 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=29.2
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.++.+.++||| +++.+.++.+.| +|.+.+|.-..
T Consensus 230 ~~~~leaSGGI-~~~ni~~yA~tG--vD~Is~galt~ 263 (278)
T PRK08385 230 ERVKIEVSGGI-TPENIEEYAKLD--VDVISLGALTH 263 (278)
T ss_pred CCEEEEEECCC-CHHHHHHHHHcC--CCEEEeChhhc
Confidence 36789999999 899999999987 99999995433
No 396
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=85.41 E-value=17 Score=39.32 Aligned_cols=86 Identities=10% Similarity=0.111 Sum_probs=48.7
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a 456 (611)
|.+++++.+.++.++ ..|+|.|++-.|-.......... . ..........+.+++.+++||.+- | .....
T Consensus 220 g~~~~e~~~i~~~Le-~~G~d~i~vs~g~~e~~~~~~~~--~--~~~~~~~~~~~~ik~~v~iPVi~~---G---~i~~~ 288 (353)
T cd02930 220 GSTWEEVVALAKALE-AAGADILNTGIGWHEARVPTIAT--S--VPRGAFAWATAKLKRAVDIPVIAS---N---RINTP 288 (353)
T ss_pred CCCHHHHHHHHHHHH-HcCCCEEEeCCCcCCCCCccccc--c--CCchhhHHHHHHHHHhCCCCEEEc---C---CCCCH
Confidence 347788888888885 46899999954421000110000 0 011123456778888888998773 1 12223
Q ss_pred HHHHHHHHHcCCCEEEE
Q psy9514 457 HNFMPKFRDWGASLITL 473 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itv 473 (611)
..+.+.+++.++|+|.+
T Consensus 289 ~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 289 EVAERLLADGDADMVSM 305 (353)
T ss_pred HHHHHHHHCCCCChhHh
Confidence 34445556666888765
No 397
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=84.79 E-value=6.5 Score=38.20 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=29.8
Q ss_pred CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 547 CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 547 ~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
...+-|.++||| +++.+.++...| +|.+.+|.-...=|
T Consensus 125 ~~~v~ie~SGGI-~~~ni~~ya~~g--vD~isvg~~~~~a~ 162 (169)
T PF01729_consen 125 NPRVKIEASGGI-TLENIAEYAKTG--VDVISVGSLTHSAP 162 (169)
T ss_dssp TTTSEEEEESSS-STTTHHHHHHTT---SEEEECHHHHSBE
T ss_pred CCcEEEEEECCC-CHHHHHHHHhcC--CCEEEcChhhcCCc
Confidence 456889999999 699999999987 99999996544433
No 398
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=84.73 E-value=0.34 Score=47.60 Aligned_cols=27 Identities=37% Similarity=0.901 Sum_probs=23.1
Q ss_pred cccCCcccccCCCCCCCCCCCCCCCcCChh
Q psy9514 73 EDCYCPFLKDSTLEQTCKYGEKCKFVHDKN 102 (611)
Q Consensus 73 ~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~ 102 (611)
....|..+-.+ +-|-|||.|+|+||-.
T Consensus 140 qpdVCKdyk~T---GYCGYGDsCKflH~R~ 166 (259)
T COG5152 140 QPDVCKDYKET---GYCGYGDSCKFLHDRS 166 (259)
T ss_pred Ccccccchhhc---ccccCCchhhhhhhhh
Confidence 46789988877 6899999999999965
No 399
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=84.65 E-value=56 Score=34.32 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=37.9
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHhhhC
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGALIK 586 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRgaL~d 586 (611)
.-+|+.++++.+.. ++|++.=|+=-.+ +++.+++..| +-=|=|++.+..-
T Consensus 182 ~L~~~~L~~i~~~~-~vPLVlHGgSG~~~e~~~~ai~~G--i~KiNi~T~l~~a 232 (276)
T cd00947 182 KLDFDRLKEIAERV-NVPLVLHGGSGIPDEQIRKAIKLG--VCKININTDLRLA 232 (276)
T ss_pred ccCHHHHHHHHHHh-CCCEEEeCCCCCCHHHHHHHHHcC--CeEEEeChHHHHH
Confidence 35788888887764 8999987776655 5577888887 8888888876543
No 400
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=84.62 E-value=14 Score=40.41 Aligned_cols=90 Identities=20% Similarity=0.265 Sum_probs=52.3
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHH
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a 456 (611)
|.++++..+.++.++ ..|+|.|+++.|-....... .......+.....+++.+++.+++||.+-=++ .+.
T Consensus 248 g~~~e~~~~~~~~l~-~~gvD~l~vs~g~~~~~~~~---~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i------~~~ 317 (382)
T cd02931 248 GRDLEEGLKAAKILE-EAGYDALDVDAGSYDAWYWN---HPPMYQKKGMYLPYCKALKEVVDVPVIMAGRM------EDP 317 (382)
T ss_pred CCCHHHHHHHHHHHH-HhCCCEEEeCCCCCcccccc---cCCccCCcchhHHHHHHHHHHCCCCEEEeCCC------CCH
Confidence 446788888888886 45899999998753211100 00001111223456777888888998764222 122
Q ss_pred HHHHHHHHHcCCCEEEEEccc
Q psy9514 457 HNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR~ 477 (611)
....+.|++.++|+|.+ ||.
T Consensus 318 ~~~~~~l~~g~~D~V~~-gR~ 337 (382)
T cd02931 318 ELASEAINEGIADMISL-GRP 337 (382)
T ss_pred HHHHHHHHcCCCCeeee-chH
Confidence 34445566677898765 443
No 401
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=84.47 E-value=21 Score=38.59 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=35.5
Q ss_pred ccCCccHHHHHHHHhhCCCCcEE-EecCCCCHHHHHHHH----HcCCCc--cEEEEcHHhhhCC
Q psy9514 531 YTKQADWDYIEKCAQLCSPAPLY-GNGDILSYEDYTESL----KKSPSI--SGVMIGRGALIKP 587 (611)
Q Consensus 531 ~~~~a~~~~i~~~~k~~~~iPVI-gnGgI~s~eda~~~l----~~G~~a--D~VmIGRgaL~dP 587 (611)
|+.....+.++++... .++|+| ..|++ |.++..+.+ +.| + .||.+||....++
T Consensus 224 ~~~~~~~~~f~~~~~a-~~~P~vvlsgG~-~~~~f~~~l~~A~~aG--a~f~Gvl~GRniwq~~ 283 (340)
T PRK12858 224 YTQEEAFKLFREQSDA-TDLPFIFLSAGV-SPELFRRTLEFACEAG--ADFSGVLCGRATWQDG 283 (340)
T ss_pred ccHHHHHHHHHHHHhh-CCCCEEEECCCC-CHHHHHHHHHHHHHcC--CCccchhhhHHHHhhh
Confidence 4444344566666654 477866 58887 666666554 455 7 9999999988765
No 402
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=84.35 E-value=2.8 Score=47.70 Aligned_cols=67 Identities=9% Similarity=0.243 Sum_probs=49.6
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+-++.+.++|++.|.+..- .+ ....-|+.++++.+..++++|| .|+|.|.+++..+++.| ||+|.+|
T Consensus 251 ~r~~~l~~ag~d~i~iD~~--~g--~~~~~~~~i~~ik~~~p~~~vi-~g~v~t~e~a~~a~~aG--aD~i~vg 317 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSS--QG--DSIYQLEMIKYIKKTYPELDVI-GGNVVTMYQAQNLIQAG--VDGLRVG 317 (505)
T ss_pred HHHHHHHHcCCCEEEEeCC--CC--CcHHHHHHHHHHHHhCCCCcEE-EecCCCHHHHHHHHHcC--cCEEEEC
Confidence 3456788899999987441 00 1112468888887776566665 68999999999999998 9999775
No 403
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=84.31 E-value=45 Score=35.81 Aligned_cols=80 Identities=8% Similarity=-0.074 Sum_probs=44.1
Q ss_pred ccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchH
Q psy9514 376 CGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455 (611)
Q Consensus 376 ~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~ 455 (611)
...+++.+.+.++. ..||..+-|..|-+ | ..+..-.+.|++|++.+|..+.+.+=....=+...
T Consensus 86 ~~~~~e~~~~~~~~---~~G~~~~KvKVg~~---------~----~~~~~Di~rv~avRe~lGpd~~LrvDAN~~ws~~~ 149 (327)
T PRK02901 86 PAVDAAQVPEVLAR---FPGCRTAKVKVAEP---------G----QTLADDVARVNAVRDALGPDGRVRVDANGGWSVDE 149 (327)
T ss_pred CCCCHHHHHHHHHH---hCCCCEEEEEECCC---------C----CCHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHH
Confidence 33355554444333 23676666654421 1 23455567778888888765444433221123467
Q ss_pred HHHHHHHH-HHcCCCEE
Q psy9514 456 IHNFMPKF-RDWGASLI 471 (611)
Q Consensus 456 a~~la~~l-~~aGvd~I 471 (611)
+..+++.| ++.++.+|
T Consensus 150 Ai~~~~~L~e~~~l~~i 166 (327)
T PRK02901 150 AVAAARALDADGPLEYV 166 (327)
T ss_pred HHHHHHHhhhccCceEE
Confidence 88888888 56666554
No 404
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.29 E-value=12 Score=39.14 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=66.5
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE-Ecccccc-ccccCcChhHHH
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL-HGRTREQ-RYTKQADWDYIE 492 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv-hgR~r~q-r~~~~adw~~i~ 492 (611)
.|+..+++..++.++ ...+.||.+|.-+ ..+.++....+..+...|..-+++ |.+.+.- .|
T Consensus 116 Iga~~~~n~~LL~~~-----a~~gkPV~lk~G~--~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y---------- 178 (266)
T PRK13398 116 IGSRNMQNFELLKEV-----GKTKKPILLKRGM--SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETY---------- 178 (266)
T ss_pred ECcccccCHHHHHHH-----hcCCCcEEEeCCC--CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCC----------
Confidence 477778887766444 2468999998543 334566777788888888854444 3322110 11
Q ss_pred HHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEE-ecCCCC-----HHHHHH
Q psy9514 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG-NGDILS-----YEDYTE 566 (611)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIg-nGgI~s-----~eda~~ 566 (611)
.....++..+..+.+. .++||+. ..-... +..+..
T Consensus 179 --------------------------------------~~~~vdl~~i~~lk~~-~~~pV~~D~sHs~G~~~~v~~~~~a 219 (266)
T PRK13398 179 --------------------------------------TRNTLDLAAVAVIKEL-SHLPIIVDPSHATGRRELVIPMAKA 219 (266)
T ss_pred --------------------------------------CHHHHHHHHHHHHHhc-cCCCEEEeCCCcccchhhHHHHHHH
Confidence 0111245555554433 4789887 444444 677777
Q ss_pred HHHcCCCccEEEEcH
Q psy9514 567 SLKKSPSISGVMIGR 581 (611)
Q Consensus 567 ~l~~G~~aD~VmIGR 581 (611)
.+..| +||+||=+
T Consensus 220 Ava~G--a~Gl~iE~ 232 (266)
T PRK13398 220 AIAAG--ADGLMIEV 232 (266)
T ss_pred HHHcC--CCEEEEec
Confidence 88887 99999863
No 405
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=84.25 E-value=10 Score=40.67 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=56.1
Q ss_pred HhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEE-EEEcccc-CCchHHHHHHHHH-HHcCC
Q psy9514 392 EQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV-KTRTGIH-KDNNIIHNFMPKF-RDWGA 468 (611)
Q Consensus 392 ~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtV-KiR~g~~-~~~~~a~~la~~l-~~aGv 468 (611)
+.+|+|+|=+--+-. +.-.||-+.+--..+.+...+++|++....|++| -+=.|.. .+.+.+.+-+.+| .++|+
T Consensus 52 d~aGvD~ILVGDSlg---mv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~nA~rl~~eaGa 128 (332)
T PLN02424 52 DSAGIDVCLVGDSAA---MVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVESAVRMLKEGGM 128 (332)
T ss_pred HHcCCCEEEECCcHH---HHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 345888887633322 3344555555455666777777888877888877 5555533 4556777777777 67999
Q ss_pred CEEEEEccc
Q psy9514 469 SLITLHGRT 477 (611)
Q Consensus 469 d~ItvhgR~ 477 (611)
++|.+-|..
T Consensus 129 ~aVKlEGg~ 137 (332)
T PLN02424 129 DAVKLEGGS 137 (332)
T ss_pred cEEEECCCc
Confidence 999998873
No 406
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=84.24 E-value=18 Score=37.62 Aligned_cols=48 Identities=15% Similarity=0.335 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCCCcEEEecCCCC--HHHHH----HHHHcCCCccEEEEcHHhhhCCc
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILS--YEDYT----ESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s--~eda~----~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
+.+++++.... +||+..||=.+ .+++. ++++.| +-||.+||=+.-.|.
T Consensus 192 e~F~~vv~~~~-vpVviaGG~k~~~~~~~l~~~~~ai~aG--a~G~~~GRNifQ~~~ 245 (265)
T COG1830 192 ESFRRVVAACG-VPVVIAGGPKTETEREFLEMVTAAIEAG--AMGVAVGRNIFQHED 245 (265)
T ss_pred HHHHHHHHhCC-CCEEEeCCCCCCChHHHHHHHHHHHHcc--CcchhhhhhhhccCC
Confidence 55566666664 99998888665 44443 456676 999999999988765
No 407
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.07 E-value=1.2 Score=44.47 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=42.0
Q ss_pred hhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHh
Q psy9514 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 504 ~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRga 583 (611)
....+++.+.+.|++.|++|+|++ ... . .+ -.+++.+.++.+. ++.-+++-|-
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~-----------------~~~-~-----~~-~~~~~~~~~i~~~---~~ipvi~~Gg 191 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTR-----------------EQR-Y-----SG-PADWDYIAEIKEA---VSIPVIANGD 191 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCH-----------------HHc-C-----CC-CCCHHHHHHHHhC---CCCeEEEeCC
Confidence 345667888899999999998632 000 0 11 1256666665553 4556666677
Q ss_pred hhCCchHHHHHcc
Q psy9514 584 LIKPWIFQEIKEK 596 (611)
Q Consensus 584 L~dP~lf~ei~~g 596 (611)
+.+|.-+.++.+.
T Consensus 192 i~~~~d~~~~l~~ 204 (231)
T cd02801 192 IFSLEDALRCLEQ 204 (231)
T ss_pred CCCHHHHHHHHHh
Confidence 8888777776553
No 408
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=83.89 E-value=13 Score=38.55 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=47.1
Q ss_pred hcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCC-EEEEEEcccc-CCchHHHHHHH-HHHHcCCC
Q psy9514 393 QMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLP-ITVKTRTGIH-KDNNIIHNFMP-KFRDWGAS 469 (611)
Q Consensus 393 ~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~P-vtVKiR~g~~-~~~~~a~~la~-~l~~aGvd 469 (611)
.+|||+|= .|-... ....|+-....-..+.+...++.|.+.++.| |++-+-.|.. .+.+.+..-+. .++++|++
T Consensus 30 ~aG~d~i~--vGds~~-~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~ 106 (254)
T cd06557 30 EAGVDVIL--VGDSLG-MVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGAD 106 (254)
T ss_pred HcCCCEEE--ECHHHH-HHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCe
Confidence 45899883 232211 1123443334445666677777777777888 6655532322 23455555544 45559999
Q ss_pred EEEEEcc
Q psy9514 470 LITLHGR 476 (611)
Q Consensus 470 ~ItvhgR 476 (611)
+|.+-+.
T Consensus 107 aVkiEd~ 113 (254)
T cd06557 107 AVKLEGG 113 (254)
T ss_pred EEEEcCc
Confidence 9999775
No 409
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=83.86 E-value=28 Score=39.01 Aligned_cols=72 Identities=6% Similarity=0.021 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC--CchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--DNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--~~~~a 456 (611)
+++.+.+-|+...+..||..|-|-.|-+ ++..-.+.|++++++++ . +.+++-.+. +...+
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiKvG~~---------------~~~~Di~~v~avRea~~-d--~~L~vDAN~~wt~~~A 241 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLKGGVL---------------RGEEEIEAVTALAKRFP-Q--ARITLDPNGAWSLDEA 241 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC---------------ChHHHHHHHHHHHHhCC-C--CeEEEECCCCCCHHHH
Confidence 5666655555443334888887765432 12344677888888762 2 334442222 34678
Q ss_pred HHHHHHHHHcCCC
Q psy9514 457 HNFMPKFRDWGAS 469 (611)
Q Consensus 457 ~~la~~l~~aGvd 469 (611)
..++++|++. +.
T Consensus 242 i~~~~~Le~~-~~ 253 (441)
T TIGR03247 242 IALCKDLKGV-LA 253 (441)
T ss_pred HHHHHHhhhh-hc
Confidence 8999999875 44
No 410
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=83.71 E-value=10 Score=40.11 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 424 ~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
..+...++.|..++++||++-+-.|+-...+ +...++.++++|+.+|+|-...
T Consensus 63 ~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~-v~r~V~~~~~aGaagi~IEDq~ 115 (294)
T TIGR02319 63 SEQAINAKNIVLAVDVPVIMDADAGYGNAMS-VWRATREFERVGIVGYHLEDQV 115 (294)
T ss_pred HHHHHHHHHHHhccCCCEEEECCCCCCCcHH-HHHHHHHHHHcCCeEEEEECCC
Confidence 3455666777777899999999888765544 6788999999999999996543
No 411
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=83.70 E-value=3.4 Score=43.12 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=45.5
Q ss_pred hhHhcCCceEEeccccccccccCCccHHHHHHHHhhCC-CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 511 ~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~-~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
...+.|++.|.+.. ...+.++++++... ++||.+.||| +++.+.++.+.| +|+|.+|.-
T Consensus 197 ~A~~~gaDyI~ld~----------~~~e~l~~~~~~~~~~ipi~AiGGI-~~~ni~~~a~~G--vd~Iav~sl 256 (268)
T cd01572 197 EALEAGADIIMLDN----------MSPEELREAVALLKGRVLLEASGGI-TLENIRAYAETG--VDYISVGAL 256 (268)
T ss_pred HHHHcCCCEEEECC----------cCHHHHHHHHHHcCCCCcEEEECCC-CHHHHHHHHHcC--CCEEEEEee
Confidence 44567899887643 23466777666443 5999999999 699999999987 999999963
No 412
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.68 E-value=16 Score=38.65 Aligned_cols=140 Identities=15% Similarity=0.077 Sum_probs=75.7
Q ss_pred hhHHHHHHHHhhhccceeeeccCCC---------Cc-chhhccCCCc---------ccc-------ccccceeeeccc--
Q psy9514 326 YVLTKCTQLLEEQMAVDFVDVNLGC---------PI-EFIYKQGSGS---------GLL-------QRANLFGVQLCG-- 377 (611)
Q Consensus 326 ~~~~~~a~~l~~~~~v~~idln~gc---------p~-~~~~~~~~~~---------~l~-------~~~~~~ivQi~g-- 377 (611)
+.+..+|+.+.+ .++|.|+|++++ |. +..-++.+++ +.+ ..+.++++-+..
T Consensus 141 ~~~~~aA~~a~~-aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 141 EDFAAAARRAKE-AGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHHHHHH-cCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 345566665544 678999998763 32 1211211111 111 113456665553
Q ss_pred -----CchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCC
Q psy9514 378 -----NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKD 452 (611)
Q Consensus 378 -----~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~ 452 (611)
.+++++.+.++.+. ..|+|.|++..+......... +. .......-.+.++.+++.+++||.+-=++
T Consensus 220 ~~~~g~~~~e~~~la~~l~-~~G~d~i~vs~g~~~~~~~~~--~~-~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi----- 290 (327)
T cd02803 220 FVPGGLTLEEAIEIAKALE-EAGVDALHVSGGSYESPPPII--PP-PYVPEGYFLELAEKIKKAVKIPVIAVGGI----- 290 (327)
T ss_pred cCCCCCCHHHHHHHHHHHH-HcCCCEEEeCCCCCccccccc--CC-CCCCcchhHHHHHHHHHHCCCCEEEeCCC-----
Confidence 35778888888885 468999999877542111100 00 00012233466777888888888764221
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRT 477 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~ 477 (611)
.....+.+.++..|+|+|.+ ||.
T Consensus 291 -~t~~~a~~~l~~g~aD~V~i-gR~ 313 (327)
T cd02803 291 -RDPEVAEEILAEGKADLVAL-GRA 313 (327)
T ss_pred -CCHHHHHHHHHCCCCCeeee-cHH
Confidence 22334444555568998876 443
No 413
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=83.68 E-value=57 Score=33.62 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=64.8
Q ss_pred ceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-CCCEEEEEEcc
Q psy9514 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-SLPITVKTRTG 448 (611)
Q Consensus 370 ~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~~PvtVKiR~g 448 (611)
.+.+.+.|.+++++.+.++.+.. .++|.||+=+- -+.. ..+...+.+++..+++.. ++|+.+-+|..
T Consensus 17 ~i~v~l~~~~~~e~~~~~~~~~~-~~aD~vElRlD---------~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~ 84 (253)
T PRK02412 17 KIIVPIMGKTLEEVLAEALAISK-YDADIIEWRAD---------FLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTA 84 (253)
T ss_pred EEEEEeCCCCHHHHHHHHHHHhh-cCCCEEEEEec---------hhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 46788999999998877776542 47999998321 1110 123456777778887766 58999999974
Q ss_pred ccC-----CchHHHHHHHHHHHcC-CCEEEEEcc
Q psy9514 449 IHK-----DNNIIHNFMPKFRDWG-ASLITLHGR 476 (611)
Q Consensus 449 ~~~-----~~~~a~~la~~l~~aG-vd~ItvhgR 476 (611)
... +.+.-.++.+.+.+.| +++|.|--.
T Consensus 85 ~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~ 118 (253)
T PRK02412 85 KEGGEIALSDEEYLALIKAVIKSGLPDYIDVELF 118 (253)
T ss_pred hhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 321 2234456777778888 899998653
No 414
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=83.60 E-value=71 Score=34.69 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=35.9
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCH----------------------HHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSY----------------------EDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~----------------------eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-+|+.++++.+...++|++.=|+=-.+ +++.+++..| +-=|=|++.+..
T Consensus 210 Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~G--I~KVNi~Tdl~~ 280 (347)
T TIGR01521 210 LAIQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYG--VRKVNIDTDLRL 280 (347)
T ss_pred cCHHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCC--CeeEEeChHHHH
Confidence 477888887665436898887776554 7888888887 888888876643
No 415
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=83.26 E-value=47 Score=34.74 Aligned_cols=84 Identities=19% Similarity=0.191 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+..|+++|=++.+- |-...-..+.-.++++.+.+.++ +||.+-+ |. .+..++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gst----------GE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv--~~-~~~~~a 85 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGST----------GEGFLLSVEERKQIAEIVAEAAKGKVTLIAHV--GS-LNLKES 85 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCeEEecc--CC-CCHHHH
Confidence 556677777777643388888776321 22222223333455555554442 5666643 21 345678
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.++++|++++.+..
T Consensus 86 i~~a~~a~~~Gad~v~~~~ 104 (288)
T cd00954 86 QELAKHAEELGYDAISAIT 104 (288)
T ss_pred HHHHHHHHHcCCCEEEEeC
Confidence 9999999999999998754
No 416
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=83.06 E-value=15 Score=36.21 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=57.5
Q ss_pred CCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCc
Q psy9514 439 LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGAS 518 (611)
Q Consensus 439 ~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~ 518 (611)
.++..-+|. .+.+.+..+++.+.+.|+..|.+.-++..
T Consensus 12 ~~~~~v~r~---~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~--------------------------------------- 49 (187)
T PRK07455 12 HRAIAVIRA---PDLELGLQMAEAVAAGGMRLIEITWNSDQ--------------------------------------- 49 (187)
T ss_pred CCEEEEEEc---CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---------------------------------------
Confidence 466666775 35578889999999999999988654421
Q ss_pred eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 519 LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 519 ~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
..+.+..+.+. .+.-.++.|-+.+.++++.+++.| +|+|++|-
T Consensus 50 -----------------~~e~~~~~~~~-~~~~~~g~gtvl~~d~~~~A~~~g--Adgv~~p~ 92 (187)
T PRK07455 50 -----------------PAELISQLREK-LPECIIGTGTILTLEDLEEAIAAG--AQFCFTPH 92 (187)
T ss_pred -----------------HHHHHHHHHHh-CCCcEEeEEEEEcHHHHHHHHHcC--CCEEECCC
Confidence 12334443333 344457888888999999999987 99997773
No 417
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=83.02 E-value=9.2 Score=43.34 Aligned_cols=129 Identities=20% Similarity=0.298 Sum_probs=76.9
Q ss_pred HHHHHHHHhhcCCCEE-EEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhh
Q psy9514 427 QSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNII 505 (611)
Q Consensus 427 ~eIv~av~~~~~~Pvt-VKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~ 505 (611)
.++|+.+++ .|-||- |-|-.|. .+.+.+.+++..|..-|..+|.+..++-+| |..+-..-
T Consensus 111 krLv~kara-~G~~I~gvvIsAGI-P~le~A~ElI~~L~~~G~~yv~fKPGtIeq----------I~svi~IA------- 171 (717)
T COG4981 111 KRLVQKARA-SGAPIDGVVISAGI-PSLEEAVELIEELGDDGFPYVAFKPGTIEQ----------IRSVIRIA------- 171 (717)
T ss_pred HHHHHHHHh-cCCCcceEEEecCC-CcHHHHHHHHHHHhhcCceeEEecCCcHHH----------HHHHHHHH-------
Confidence 456677765 455543 2233444 456889999999999999999998877433 22221110
Q ss_pred hhcchhhHhcCCceEEe--ccccccccccCCccHH--------HHHHHHhhCCCCcEEEecCCCCHHHHHHHHHc-----
Q psy9514 506 HNFMPKFRDWGASLITL--HGRTREQRYTKQADWD--------YIEKCAQLCSPAPLYGNGDILSYEDYTESLKK----- 570 (611)
Q Consensus 506 ~~~~~~l~~~G~~~iti--hgrtr~g~~~~~a~~~--------~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~----- 570 (611)
.+.---.|.+ .|. +-.++-.|+ .+.++ +...+|-++..|||-|++++..+|.-
T Consensus 172 -------ka~P~~pIilq~egG----raGGHHSweDld~llL~tYs~l-R~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~ 239 (717)
T COG4981 172 -------KANPTFPIILQWEGG----RAGGHHSWEDLDDLLLATYSEL-RSRDNIVLCVGGGIGTPDDAAPYLTGEWSTA 239 (717)
T ss_pred -------hcCCCCceEEEEecC----ccCCccchhhcccHHHHHHHHH-hcCCCEEEEecCCcCChhhcccccccchhhh
Confidence 0000111122 111 112222332 22333 34568899999999999999999851
Q ss_pred -C-C--CccEEEEcHHhhhC
Q psy9514 571 -S-P--SISGVMIGRGALIK 586 (611)
Q Consensus 571 -G-~--~aD~VmIGRgaL~d 586 (611)
| | -+||+.+|.++++-
T Consensus 240 ~g~P~MP~DGiLvGtaaMat 259 (717)
T COG4981 240 YGFPPMPFDGILVGTAAMAT 259 (717)
T ss_pred cCCCCCCcceeEechhHHhh
Confidence 0 0 39999999999873
No 418
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=82.93 E-value=4.3 Score=41.10 Aligned_cols=145 Identities=14% Similarity=0.098 Sum_probs=75.7
Q ss_pred HHHHHHHhhc-CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCc-h--
Q psy9514 428 SVITCMNEVS-SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN-N-- 503 (611)
Q Consensus 428 eIv~av~~~~-~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~-~-- 503 (611)
++|+.+++.. +.+|.+-+.+- |-.++ +++.+.+.|++.+++|+.... ..|..+.+...+.. .
T Consensus 45 ~~i~~lk~~~~~~~IflDlKl~--DIp~t---v~~~~~~~Gad~~tv~~~~g~---------~~i~~a~~~a~~~~~~~~ 110 (218)
T PRK13305 45 GAVKALREQCPDKIIVADWKVA--DAGET---LAQQAFGAGANWMTIICAAPL---------ATVEKGHAVAQRCGGEIQ 110 (218)
T ss_pred HHHHHHHHhCCCCEEEEEeecc--cChHH---HHHHHHHcCCCEEEEecCCCH---------HHHHHHHHHHHhcCCccc
Confidence 5667777765 56777776653 32222 444667999999999876321 22444444211111 0
Q ss_pred -h-----hhhcchhhHhcCCceEEec-ccccc--ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCc
Q psy9514 504 -I-----IHNFMPKFRDWGASLITLH-GRTRE--QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574 (611)
Q Consensus 504 -~-----~~~~~~~l~~~G~~~itih-grtr~--g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~a 574 (611)
. ...-...+.+.|++.+.+| ++... |....+.....+++... .+.+++..|||+ ++.....-+.. +
T Consensus 111 ~~llgV~t~~~~~~l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~--~~~~i~VtpGIr-~~~~~~~dq~r--v 185 (218)
T PRK13305 111 IELFGNWTLDDARDWHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSD--IGLELSITGGIT-PADLPLFKDIR--V 185 (218)
T ss_pred ceEEEecCcchHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC--CCCcEEEeCCcC-ccccccccccC--C
Confidence 0 0011133445555433332 11110 10011112223333321 245688999996 55555555654 9
Q ss_pred cEEEEcHHhhhCCchHH
Q psy9514 575 SGVMIGRGALIKPWIFQ 591 (611)
Q Consensus 575 D~VmIGRgaL~dP~lf~ 591 (611)
|.++|||+...-++-.+
T Consensus 186 d~iVVGR~It~A~dP~~ 202 (218)
T PRK13305 186 KAFIAGRALAGAANPAQ 202 (218)
T ss_pred CEEEECCcccCCCCHHH
Confidence 99999999998766443
No 419
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=82.88 E-value=58 Score=34.34 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=35.5
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCC-HHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILS-YEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s-~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.-+|+.++++.+. .++|++.=|+-.. .+++.+++..| +.=|=|++.+..
T Consensus 186 ~Ldf~~L~~I~~~-~~iPLVlHGgSG~~~e~~~~ai~~G--i~KiNi~T~l~~ 235 (282)
T TIGR01858 186 KLDFDRLAEIREV-VDVPLVLHGASDVPDEDVRRTIELG--ICKVNVATELKI 235 (282)
T ss_pred ccCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcC--CeEEEeCcHHHH
Confidence 3478888888665 4899887776544 45666788877 888888877653
No 420
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=82.77 E-value=68 Score=34.27 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=36.4
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCCHH----------------------HHHHHHHcCCCccEEEEcHHhhh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILSYE----------------------DYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s~e----------------------da~~~l~~G~~aD~VmIGRgaL~ 585 (611)
.-+|+.+.++.+. .++|++.=|+=..++ ++.+++..| +.=|=|++.+..
T Consensus 190 ~L~f~~L~~I~~~-~~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~G--I~KiNi~T~l~~ 260 (307)
T PRK05835 190 KLDFERLQEVKRL-TNIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGG--INKVNTDTDLRI 260 (307)
T ss_pred ccCHHHHHHHHHH-hCCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcC--ceEEEeChHHHH
Confidence 3478888887665 489998888777666 677888877 777888876643
No 421
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=82.71 E-value=15 Score=40.40 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=37.1
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+..+|+.|+.+.+.. ++|||.- +|.+.+|+..+++.| ||+|.|.
T Consensus 238 ~~~tW~~i~~lr~~~-~~pvivK-gV~~~~dA~~a~~~G--~d~I~vs 281 (383)
T cd03332 238 PSLTWEDLAFLREWT-DLPIVLK-GILHPDDARRAVEAG--VDGVVVS 281 (383)
T ss_pred CCCCHHHHHHHHHhc-CCCEEEe-cCCCHHHHHHHHHCC--CCEEEEc
Confidence 456899999987764 7898854 778999999999998 9999974
No 422
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=82.65 E-value=10 Score=39.94 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccc
Q psy9514 423 ANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTR 478 (611)
Q Consensus 423 ~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r 478 (611)
...+...++.|..++++||+|-+=.|+.+ ...+...++.++++|+.+|+|-.-..
T Consensus 63 ~~e~~~~vrrI~~a~~lPv~vD~dtGfG~-~~nvartV~~~~~aG~agi~iEDq~~ 117 (289)
T COG2513 63 LDEVLADARRITDAVDLPVLVDIDTGFGE-ALNVARTVRELEQAGAAGIHIEDQVG 117 (289)
T ss_pred HHHHHHHHHHHHhhcCCceEEeccCCCCc-HHHHHHHHHHHHHcCcceeeeeeccc
Confidence 44566777778888899999999888766 56677888899999999999866543
No 423
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=82.60 E-value=46 Score=35.28 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=27.8
Q ss_pred HHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 538 DYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 538 ~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
+.++.+.+. .++||.+.=.+.++.|+.+++..+ .+|.|.+
T Consensus 196 ~~~~~l~~~-~~~Pia~dEs~~~~~d~~~~~~~~-~~d~i~i 235 (307)
T TIGR01927 196 DEMSAFSEA-TGTAIALDESLWELPQLADEYGPG-WRGALVI 235 (307)
T ss_pred HHHHHHHHh-CCCCEEeCCCcCChHHHHHHHhcC-CCceEEE
Confidence 334444443 478887777788888888888876 5677765
No 424
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=82.44 E-value=17 Score=39.45 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
+...|+.++.+.+. .++|||.- +|.+++|+..+.+.| ||+|.|.
T Consensus 198 ~~~~~~~i~~l~~~-~~~PvivK-gv~~~~dA~~a~~~G--~d~I~vs 241 (344)
T cd02922 198 PTLTWDDIKWLRKH-TKLPIVLK-GVQTVEDAVLAAEYG--VDGIVLS 241 (344)
T ss_pred CCCCHHHHHHHHHh-cCCcEEEE-cCCCHHHHHHHHHcC--CCEEEEE
Confidence 45689999998765 48998865 678999999999987 9998864
No 425
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=82.43 E-value=50 Score=34.94 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=54.4
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCC-CccceeccccccccccChHHHHHHHHHHHhh-cCCCEEEEEEcccc---C
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGC-PIEFIYKQGSGSGLLQRANILQSVITCMNEV-SSLPITVKTRTGIH---K 451 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gC-P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~-~~~PvtVKiR~g~~---~ 451 (611)
|+.+ ...+.++.+. .+|+.+|.|-=.. |..+-.. .-|..-+-.++...+-|++++++ .+.++.|--|+... .
T Consensus 87 G~~~-~v~~tV~~~~-~aGvagi~IEDq~~pk~cg~~-~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~ 163 (290)
T TIGR02321 87 GNAV-NVHYVVPQYE-AAGASAIVMEDKTFPKDTSLR-TDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_pred CCcH-HHHHHHHHHH-HcCCeEEEEeCCCCCcccccc-cCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Confidence 4444 4555555554 4699999884332 3110000 01211122344334444444443 46788888887532 2
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
..+++++=+++..++|+|.|-+++.
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifv~~~ 188 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAGADAILIHSR 188 (290)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC
Confidence 3356677777889999999999864
No 426
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.41 E-value=50 Score=34.99 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a 456 (611)
+-+.+.+.++.+. ..|+|+|=++.+ -|-...-..+-=.++++.++++++ +||++- +|. .+..++
T Consensus 23 D~~a~~~lv~~li-~~Gv~gi~~~Gt----------tGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG--~g~-~~t~ea 88 (299)
T COG0329 23 DEEALRRLVEFLI-AAGVDGLVVLGT----------TGESPTLTLEERKEVLEAVVEAVGGRVPVIAG--VGS-NSTAEA 88 (299)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCC----------CccchhcCHHHHHHHHHHHHHHHCCCCcEEEe--cCC-CcHHHH
Confidence 5566666666664 348888766532 232333344444566777777774 676665 332 245789
Q ss_pred HHHHHHHHHcCCCEEEEEcc
Q psy9514 457 HNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 457 ~~la~~l~~aGvd~ItvhgR 476 (611)
.++++..++.|+|+|-+..-
T Consensus 89 i~lak~a~~~Gad~il~v~P 108 (299)
T COG0329 89 IELAKHAEKLGADGILVVPP 108 (299)
T ss_pred HHHHHHHHhcCCCEEEEeCC
Confidence 99999999999999988654
No 427
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=82.34 E-value=18 Score=39.47 Aligned_cols=52 Identities=29% Similarity=0.270 Sum_probs=40.0
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE----cHHhhhCCc
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI----GRGALIKPW 588 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI----GRgaL~dP~ 588 (611)
+..+|+.|+.+.+. .++|||.= +|.+++|+..+++.| ||+|.| ||.+...|.
T Consensus 213 ~~~~w~~i~~l~~~-~~~PvivK-Gv~~~eda~~a~~~G--vd~I~VS~HGGrq~~~~~a 268 (367)
T TIGR02708 213 QKLSPRDIEEIAGY-SGLPVYVK-GPQCPEDADRALKAG--ASGIWVTNHGGRQLDGGPA 268 (367)
T ss_pred CCCCHHHHHHHHHh-cCCCEEEe-CCCCHHHHHHHHHcC--cCEEEECCcCccCCCCCCc
Confidence 45689999998665 58999955 588999999999997 999876 444544453
No 428
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=82.30 E-value=36 Score=35.92 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=33.6
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGA 583 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRga 583 (611)
-+|+.++++.+. .++|++.=|+--.+ +++.+++..| +-=|=|++.+
T Consensus 190 Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~G--I~KiNi~T~l 236 (286)
T PRK08610 190 LGFKEMEEIGLS-TGLPLVLHGGTGIPTKDIQKAIPFG--TAKINVNTEN 236 (286)
T ss_pred CCHHHHHHHHHH-HCCCEEEeCCCCCCHHHHHHHHHCC--CeEEEeccHH
Confidence 367888887665 48999887776655 6677788876 7777777654
No 429
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=82.23 E-value=3.3 Score=43.27 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=41.0
Q ss_pred hHhcCCceEEeccccccccccCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 512 l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
..+.|++.|.+..-.. .+...+.+.++.. .++|+++.||| +++.+.++...| +|+|++|.
T Consensus 199 A~~~gaD~I~ld~~~p-------~~l~~~~~~~~~~~~~i~i~AsGGI-~~~ni~~~~~~G--vd~I~vsa 259 (272)
T cd01573 199 AAEAGADILQLDKFSP-------EELAELVPKLRSLAPPVLLAAAGGI-NIENAAAYAAAG--ADILVTSA 259 (272)
T ss_pred HHHcCCCEEEECCCCH-------HHHHHHHHHHhccCCCceEEEECCC-CHHHHHHHHHcC--CcEEEECh
Confidence 3467888887643211 1222222222322 47999999999 899999999987 99998874
No 430
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=82.17 E-value=30 Score=35.60 Aligned_cols=143 Identities=10% Similarity=0.092 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHcCCCEEEecCcccchhhcCChhhhHhHhhccCCCeEEEEecCCChhhHHHHHHHHhhhcc--ceee
Q psy9514 267 TTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMA--VDFV 344 (611)
Q Consensus 267 t~~gnlpfRrl~~~~Ga~li~tEm~~~~~l~~g~~~e~~l~~~h~~e~~~~vQi~g~~p~~~~~~a~~l~~~~~--v~~i 344 (611)
.+..+.+.=++..+.|++++++--.... ...|.+. ...+ ..+.+...++.+..-.. .-.+
T Consensus 17 ~~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD----------~~~v-------tl~em~~~~~~I~r~~~~~pvia 78 (240)
T cd06556 17 LTAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDD----------TLPY-------PVNDVPYHVRAVRRGAPLALIVA 78 (240)
T ss_pred ecCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCC----------CCCc-------CHHHHHHHHHHHHhhCCCCCEEE
Confidence 4567888889999999999988765443 2223321 1000 12334444444433211 1223
Q ss_pred eccCCCCcchhhccCCCccccccccceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChH
Q psy9514 345 DVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 424 (611)
Q Consensus 345 dln~gcp~~~~~~~~~~~~l~~~~~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~ 424 (611)
|+..| +|++++.+.+.++++.+ +|+++|-|--+ .
T Consensus 79 D~~~G--------------------------~g~~~~~~~~~~~~l~~-aGa~gv~iED~-------------------~ 112 (240)
T cd06556 79 DLPFG--------------------------AYGAPTAAFELAKTFMR-AGAAGVKIEGG-------------------E 112 (240)
T ss_pred eCCCC--------------------------CCcCHHHHHHHHHHHHH-cCCcEEEEcCc-------------------H
Confidence 33222 24466777888887764 78888877432 1
Q ss_pred HHHHHHHHHHhhcCCCEEEEEEccccC-----------------CchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 425 ILQSVITCMNEVSSLPITVKTRTGIHK-----------------DNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 425 ~l~eIv~av~~~~~~PvtVKiR~g~~~-----------------~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
...+.++++++. ++||.. |++... ..+.+++-+++++++|+++|-+.+.
T Consensus 113 ~~~~~i~ai~~a-~i~Via--Rtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~ 178 (240)
T cd06556 113 WHIETLQMLTAA-AVPVIA--HTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV 178 (240)
T ss_pred HHHHHHHHHHHc-CCeEEE--EeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 233455666553 366654 554321 1235666677889999999999875
No 431
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=82.05 E-value=13 Score=38.06 Aligned_cols=127 Identities=12% Similarity=0.043 Sum_probs=80.4
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc-Cch---hhhhcchhhHhcCCceEEecccccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR-DNN---IIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~-~~~---~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
.++..+.+..++.+|++.||||-|.-. | .-.-.-+..+..+++. .|. ...+++....+.-.+.+|+-.=.++
T Consensus 20 ~Pd~v~aA~~a~~aGAdgITvHlReDr-R---HI~d~Dv~~l~~~~~~~lNlE~a~~~emi~ia~~vkP~~vtLVPEkr~ 95 (237)
T TIGR00559 20 EPDPLRAALIAEQAGADGITVHLREDR-R---HIQDRDVYDLKEALTTPFNIEMAPTEEMIRIAEEIKPEQVTLVPEARD 95 (237)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCc-C---cCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 356778889999999999999998522 1 1112234444555442 222 2457788888888999998655554
Q ss_pred c-----cccCCccHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 529 Q-----RYTKQADWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 529 g-----~~~~~a~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
+ ++.-..+.+.+..+++. ...+.++..- ++++++...+.| +|.|-+=+|.+++-+
T Consensus 96 ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP---~~~qi~~A~~~G--Ad~VELhTG~YA~a~ 159 (237)
T TIGR00559 96 EVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA---DKDQISAAAEVG--ADRIEIHTGPYANAY 159 (237)
T ss_pred CccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhC--cCEEEEechhhhcCC
Confidence 3 32222233444444332 2234455443 478888888887 999999999999843
No 432
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=81.93 E-value=1.1 Score=46.98 Aligned_cols=56 Identities=25% Similarity=0.646 Sum_probs=45.7
Q ss_pred cccCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceeccccCCCCCccccCccc
Q psy9514 73 EDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSH 137 (611)
Q Consensus 73 ~~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~~G~C~~G~~Crf~~~h 137 (611)
..-.|..|..+ .|+=|+.|-|+|+.. -... .+..|..|...|.|-.|..|.+.+-|
T Consensus 103 s~V~c~~~~~g----~c~s~~~c~~lh~~d----~~~s-~~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 103 SSVVCKFFLRG----LCKSGFSCEFLHEYD----LRSS-QGPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCcccchhccc----cCcCCCccccccCCC----cccc-cCCCcccccccceeccCCCCCccccC
Confidence 45678888876 699999999999865 2222 67899999999999999999998544
No 433
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=81.92 E-value=12 Score=37.44 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=63.5
Q ss_pred eecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC-
Q psy9514 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK- 451 (611)
Q Consensus 373 vQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~- 451 (611)
+.+.+.+.+++.+-++.+... ++|+|||-+-+= .. .....+.+.+..++..++.|+.+-+|.-...
T Consensus 2 v~l~~~~~~~~~~~~~~~~~~-~~D~vElRlD~l---------~~---~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG 68 (224)
T PF01487_consen 2 VPLTGSTLEELLAELEEAESS-GADAVELRLDYL---------EN---DSAEDISEQLAELRRSLDLPIIFTVRTKEEGG 68 (224)
T ss_dssp EEE--SSHHHHHHHHHHHHHT-TTSEEEEEGGGS---------TT---TSHHHHHHHHHHHHHHCTSEEEEE--BGGGTS
T ss_pred EeeCCCCHHHHHHHHHHHHhc-CCCEEEEEeccc---------cc---cChHHHHHHHHHHHHhCCCCEEEEecccccCC
Confidence 456778888887777777533 899999964331 11 4566788888999888899999999973221
Q ss_pred ----CchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 452 ----DNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 452 ----~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
+.+.-.++...+.+.|+++|.|--.
T Consensus 69 ~~~~~~~~~~~ll~~~~~~~~d~iDiE~~ 97 (224)
T PF01487_consen 69 RFQGSEEEYLELLERAIRLGPDYIDIELD 97 (224)
T ss_dssp SBSS-HHHHHHHHHHHHHHTSSEEEEEGG
T ss_pred CCcCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 2245668888888999999999766
No 434
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=81.71 E-value=25 Score=36.22 Aligned_cols=47 Identities=13% Similarity=0.147 Sum_probs=31.7
Q ss_pred HHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcccc
Q psy9514 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTR 478 (611)
Q Consensus 429 Iv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r 478 (611)
+++.+.+... +|.+-+..+ |-.+++...++.+.++|+|++|||+-..
T Consensus 54 ~~~el~~~~~-~VflDlK~~--DIpnT~~~~~~~~~~~g~d~vtvH~~~G 100 (240)
T COG0284 54 ILEELKARGK-KVFLDLKLA--DIPNTVALAAKAAADLGADAVTVHAFGG 100 (240)
T ss_pred HHHHHHHhCC-ceEEeeecc--cchHHHHHHHHHhhhcCCcEEEEeCcCC
Confidence 4444444322 666666644 4445667778889999999999998663
No 435
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.69 E-value=70 Score=33.75 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=35.0
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCC-CHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDIL-SYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~-s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-+|+.++++.+. .++|++.=|+=. +.+++.+++..| +-=|=|++.+..
T Consensus 189 Ld~~~L~~I~~~-~~iPLVlHGgSG~~~e~~~kai~~G--i~KiNi~T~l~~ 237 (284)
T PRK12737 189 LDFERLAEIREK-VSIPLVLHGASGVPDEDVKKAISLG--ICKVNVATELKI 237 (284)
T ss_pred CCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHCC--CeEEEeCcHHHH
Confidence 478888888665 489988766544 455666788887 888888887653
No 436
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=81.55 E-value=20 Score=39.11 Aligned_cols=111 Identities=14% Similarity=0.076 Sum_probs=66.6
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCC-EEEEE-ccccccccccCcChhHHH
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS-LITLH-GRTREQRYTKQADWDYIE 492 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd-~Itvh-gR~r~qr~~~~adw~~i~ 492 (611)
.||..+.+..++..+- . .+.||.+|.-+ ....++....+..+...|.. .+-+| |.+.-..
T Consensus 207 I~s~~~~n~~LL~~~a----~-~gkPVilk~G~--~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~----------- 268 (360)
T PRK12595 207 IGARNMQNFELLKAAG----R-VNKPVLLKRGL--SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEK----------- 268 (360)
T ss_pred ECcccccCHHHHHHHH----c-cCCcEEEeCCC--CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCC-----------
Confidence 3777888876664433 2 58899998554 23456677777888888884 44445 4321000
Q ss_pred HHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCC-CC---HH--HHHH
Q psy9514 493 KCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI-LS---YE--DYTE 566 (611)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI-~s---~e--da~~ 566 (611)
......|+..+..+.+.+ ++||+.+-+= .- .. -+..
T Consensus 269 -------------------------------------~~~~~ldl~~i~~lk~~~-~~PV~~d~~Hs~G~r~~~~~~a~a 310 (360)
T PRK12595 269 -------------------------------------ATRNTLDISAVPILKQET-HLPVMVDVTHSTGRRDLLLPTAKA 310 (360)
T ss_pred -------------------------------------CCCCCcCHHHHHHHHHHh-CCCEEEeCCCCCcchhhHHHHHHH
Confidence 001224777777766544 7898883222 21 22 4455
Q ss_pred HHHcCCCccEEEEcHHh
Q psy9514 567 SLKKSPSISGVMIGRGA 583 (611)
Q Consensus 567 ~l~~G~~aD~VmIGRga 583 (611)
++..| |||+||=+=.
T Consensus 311 Ava~G--Adg~~iE~H~ 325 (360)
T PRK12595 311 ALAIG--ADGVMAEVHP 325 (360)
T ss_pred HHHcC--CCeEEEEecC
Confidence 67777 9999986543
No 437
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=81.07 E-value=1.3 Score=43.19 Aligned_cols=66 Identities=18% Similarity=0.156 Sum_probs=41.7
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
....++...++++-+.. + .--..+.++.+ ..++|||+.|=|.+.+|+.++++.| +++|....--||
T Consensus 109 ~~~~i~~~~PD~vEilP--------g-~~p~vi~~i~~-~~~~PiIAGGLI~~~e~v~~al~aG--a~aVSTS~~~LW 174 (175)
T PF04309_consen 109 GIKQIEQSKPDAVEILP--------G-VMPKVIKKIRE-ETNIPIIAGGLIRTKEDVEEALKAG--ADAVSTSNKELW 174 (175)
T ss_dssp HHHHHHHHT-SEEEEES--------C-CHHHHHCCCCC-CCSS-EEEESS--SHHHHHHHCCTT--CEEEEE--HHHC
T ss_pred HHHHHhhcCCCEEEEch--------H-HHHHHHHHHHH-hcCCCEEeecccCCHHHHHHHHHcC--CEEEEcCChHhc
Confidence 34556666777775421 1 22233444333 3489999999999999999999998 999999877665
No 438
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=81.01 E-value=73 Score=33.63 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=35.3
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCC-CHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDIL-SYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~-s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.-+|+.++++.+. .++|++.=|+=- +.+++.+++..| +-=|=|++.+.
T Consensus 188 ~Ld~~~L~~I~~~-~~vPLVLHGgSG~~~e~~~~ai~~G--i~KiNi~T~l~ 236 (284)
T PRK09195 188 KLDFDRLENIRQW-VNIPLVLHGASGLPTKDIQQTIKLG--ICKVNVATELK 236 (284)
T ss_pred cCCHHHHHHHHHH-hCCCeEEecCCCCCHHHHHHHHHcC--CeEEEeCcHHH
Confidence 3478888888665 489988766543 356677788887 88888888776
No 439
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=80.91 E-value=46 Score=34.56 Aligned_cols=83 Identities=13% Similarity=0.057 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+..+.+. ..|+++|=++.+. |-...-..+.-.++++.+.+.+. .||.+-+. . .+..++
T Consensus 19 D~~~~~~~i~~l~-~~Gv~gl~v~Gst----------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~--~-~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQI-ENGTDGLVVCGTT----------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTG--S-NNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECCCC----------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccC--C-ccHHHH
Confidence 4555666666654 3589998887332 22222233333455555555543 56665432 1 245688
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.++++|+++|.+..
T Consensus 85 ~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 85 IELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHcCCCEEEEcc
Confidence 9999999999999988764
No 440
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=80.65 E-value=9.9 Score=39.92 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=27.5
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.++.|.+.||| +++.+.++...| +|.+++|-
T Consensus 234 ~~~~leasGGI-~~~ni~~ya~~G--vD~is~ga 264 (277)
T TIGR01334 234 HIPTLAAAGGI-NPENIADYIEAG--IDLFITSA 264 (277)
T ss_pred CCEEEEEECCC-CHHHHHHHHhcC--CCEEEeCc
Confidence 46778999999 699999999987 99999994
No 441
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=80.60 E-value=19 Score=39.22 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=35.0
Q ss_pred cCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEc
Q psy9514 532 TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIG 580 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIG 580 (611)
.....|+.|+.+.+. .++|||.=|= .+++|+..+.+.| ||+|.|+
T Consensus 209 ~~~~~w~~i~~~~~~-~~~pvivKgv-~~~~da~~~~~~G--~~~i~vs 253 (356)
T PF01070_consen 209 DPSLTWDDIEWIRKQ-WKLPVIVKGV-LSPEDAKRAVDAG--VDGIDVS 253 (356)
T ss_dssp -TT-SHHHHHHHHHH-CSSEEEEEEE--SHHHHHHHHHTT---SEEEEE
T ss_pred CCCCCHHHHHHHhcc-cCCceEEEec-ccHHHHHHHHhcC--CCEEEec
Confidence 355689999998876 5999996554 8999999999998 9999986
No 442
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=80.50 E-value=12 Score=36.78 Aligned_cols=65 Identities=14% Similarity=0.050 Sum_probs=40.7
Q ss_pred chhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEe-cCCC-CHHHHHHHHHcCCCccEEEEcHH
Q psy9514 509 MPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN-GDIL-SYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 509 ~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgn-GgI~-s~eda~~~l~~G~~aD~VmIGRg 582 (611)
++.+.++|++++++|.-+ .......+-+.+++. +++++.. =+.. ..+++..+.+.| +|.|.+..|
T Consensus 69 ~~~~~~~Gad~i~vh~~~------~~~~~~~~i~~~~~~-g~~~~~~~~~~~t~~~~~~~~~~~g--~d~v~~~pg 135 (206)
T TIGR03128 69 AEQAFAAGADIVTVLGVA------DDATIKGAVKAAKKH-GKEVQVDLINVKDKVKRAKELKELG--ADYIGVHTG 135 (206)
T ss_pred HHHHHHcCCCEEEEeccC------CHHHHHHHHHHHHHc-CCEEEEEecCCCChHHHHHHHHHcC--CCEEEEcCC
Confidence 567788999999999742 222222333334443 6777653 2333 347888887776 999988644
No 443
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=80.36 E-value=55 Score=34.39 Aligned_cols=82 Identities=11% Similarity=0.023 Sum_probs=52.6
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+ .|+++|=++.+- |-...-..+.-.++++.+.+.+ ..||.+-+ |. ...++
T Consensus 24 D~~~l~~li~~l~~-~Gv~gi~v~Gst----------GE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv--~~--~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLG-YGLEALFAAGGT----------GEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV--GG--NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEECCCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--Cc--cHHHH
Confidence 55667777776653 589998776432 2222223333345555555444 36877764 42 46789
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.+++.|+|++.+..
T Consensus 89 i~~a~~a~~~Gadav~~~p 107 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLP 107 (296)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 9999999999999998754
No 444
>PRK01362 putative translaldolase; Provisional
Probab=80.34 E-value=47 Score=33.57 Aligned_cols=48 Identities=6% Similarity=-0.120 Sum_probs=33.5
Q ss_pred HHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 540 IEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 540 i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
+.++.+....-+-|..-.+.+++++.++...| ||.|-++ |.+++++..
T Consensus 147 ~~~~~~~~~~~tkilaAS~r~~~~v~~~~~~G--~d~iTi~------~~vl~~l~~ 194 (214)
T PRK01362 147 IREIYDNYGFDTEIIAASVRHPMHVLEAALAG--ADIATIP------YKVIKQLFK 194 (214)
T ss_pred HHHHHHHcCCCcEEEEeecCCHHHHHHHHHcC--CCEEecC------HHHHHHHHc
Confidence 33334433323566678899999999999998 9999887 555555543
No 445
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=80.31 E-value=20 Score=37.43 Aligned_cols=81 Identities=14% Similarity=0.047 Sum_probs=46.3
Q ss_pred HhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEE-EEEc-cccCCchHHHHHHHHHH-HcCC
Q psy9514 392 EQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITV-KTRT-GIHKDNNIIHNFMPKFR-DWGA 468 (611)
Q Consensus 392 ~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtV-KiR~-g~~~~~~~a~~la~~l~-~aGv 468 (611)
+.+|+|+|=+--+-. +...||-+.+--..+.+...+++|++....|+.| -+=. ++. +.+++..-+.++. ++|+
T Consensus 32 ~~aG~d~ilvGdSlg---m~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~-~~e~a~~na~rl~~eaGa 107 (263)
T TIGR00222 32 ADAGVDVILVGDSLG---MVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYA-TPEQALKNAARVMQETGA 107 (263)
T ss_pred HHcCCCEEEECccHh---HHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCC-CHHHHHHHHHHHHHHhCC
Confidence 345899887532222 3334444444445666777777777763333222 1111 333 3556666666654 5999
Q ss_pred CEEEEEcc
Q psy9514 469 SLITLHGR 476 (611)
Q Consensus 469 d~ItvhgR 476 (611)
++|.+-|.
T Consensus 108 ~aVkiEgg 115 (263)
T TIGR00222 108 NAVKLEGG 115 (263)
T ss_pred eEEEEcCc
Confidence 99999876
No 446
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=80.08 E-value=17 Score=37.19 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=81.3
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc-Cch---hhhhcchhhHhcCCceEEecccccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR-DNN---IIHNFMPKFRDWGASLITLHGRTRE 528 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~-~~~---~~~~~~~~l~~~G~~~itihgrtr~ 528 (611)
.++....+..++.+|++.||||-|.-. | .-.-.-+..+.++++. .|. ...++.....+.-.+.+|+-.=.++
T Consensus 20 ~Pdpv~aA~~a~~aGAdgITvHlReDr-R---HI~d~Dv~~L~~~~~~~lNlE~a~t~em~~ia~~~kP~~vtLVPEkr~ 95 (234)
T cd00003 20 YPDPVEAALLAEKAGADGITVHLREDR-R---HIQDRDVRLLRELVRTELNLEMAPTEEMLEIALEVKPHQVTLVPEKRE 95 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCc-C---cCCHHHHHHHHHHcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCCC
Confidence 356778899999999999999998522 1 1112234445555542 222 2457788888889999998555554
Q ss_pred c-----cccCCccHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 529 Q-----RYTKQADWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 529 g-----~~~~~a~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
+ ++.-..+.+.+..+++. ...+.++..- ++++++...+.| +|.|-+=+|.+++-+
T Consensus 96 E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP---d~~qi~~A~~~G--Ad~VELhTG~Ya~a~ 159 (234)
T cd00003 96 ELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP---DPEQIEAAKEVG--ADRVELHTGPYANAY 159 (234)
T ss_pred CccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC---CHHHHHHHHHhC--cCEEEEechhhhcCC
Confidence 3 33222344444444432 2233444443 478888888887 999999999999865
No 447
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=80.02 E-value=85 Score=33.18 Aligned_cols=48 Identities=13% Similarity=0.157 Sum_probs=34.4
Q ss_pred CccHHHHHHHHhhCCCCcEEEecCCCC-HHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 534 QADWDYIEKCAQLCSPAPLYGNGDILS-YEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 534 ~a~~~~i~~~~k~~~~iPVIgnGgI~s-~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.-+|+.++++.+. .++|++.=|+=-. .+++.+++..| +.=|=|++.+.
T Consensus 188 ~Ldfd~l~~I~~~-~~vPLVLHGgSG~~~e~~~kai~~G--I~KiNi~T~l~ 236 (286)
T PRK12738 188 KIDFQRLAEIREV-VDVPLVLHGASDVPDEFVRRTIELG--VTKVNVATELK 236 (286)
T ss_pred cCCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcC--CeEEEeCcHHH
Confidence 3478888888765 4899887775443 56666788876 87788877654
No 448
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.71 E-value=4.4 Score=45.80 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=53.3
Q ss_pred hhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 505 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 505 ~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
..+.+..+.+.|++.|.+..-.+. ...-++.|+++.+.+++++|| .|+|.|.+.+..+++.| +|+|-||=|
T Consensus 228 ~~~~a~~Lv~aGvd~i~~D~a~~~----~~~~~~~i~~ik~~~p~~~v~-agnv~t~~~a~~l~~aG--ad~v~vgig 298 (479)
T PRK07807 228 VAAKARALLEAGVDVLVVDTAHGH----QEKMLEALRAVRALDPGVPIV-AGNVVTAEGTRDLVEAG--ADIVKVGVG 298 (479)
T ss_pred HHHHHHHHHHhCCCEEEEeccCCc----cHHHHHHHHHHHHHCCCCeEE-eeccCCHHHHHHHHHcC--CCEEEECcc
Confidence 345677888899999977432111 223467888888877777777 59999999999999998 999886644
No 449
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=79.66 E-value=15 Score=37.68 Aligned_cols=127 Identities=14% Similarity=0.076 Sum_probs=73.4
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccC-ch---hhhhcchhhHhcCCceEEeccccc-
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD-NN---IIHNFMPKFRDWGASLITLHGRTR- 527 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~-~~---~~~~~~~~l~~~G~~~itihgrtr- 527 (611)
.++....+...+.+|++.||+|-|.-. | .-.-.-+..+..+++.. |. .+.++.....+.-.+.+|+-.=.+
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvHlReDr-R---HI~d~Dv~~L~~~~~~~lNlE~a~t~e~~~ia~~~kP~~vtLVPE~r~ 96 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVHLREDR-R---HIQDRDVRRLRELVKTPLNLEMAPTEEMVDIALKVKPDQVTLVPEKRE 96 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEEB-TT--S---SS-HHHHHHHHHH-SSEEEEEEESSHHHHHHHHHH--SEEEEE--SGG
T ss_pred CCCHHHHHHHHHHcCCCEEEeccCCCc-C---cCCHHHHHHHHHHcccCEEeccCCCHHHHHHHHhCCcCEEEECCCCCC
Confidence 356778899999999999999998521 1 11123345555555432 22 245677788888899998855444
Q ss_pred ----cccccCCccHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCc
Q psy9514 528 ----EQRYTKQADWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 528 ----~g~~~~~a~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~ 588 (611)
++++.-..+.+.+..+++. ...+.++..= ++++++...+.| +|.|-+=+|.|++-+
T Consensus 97 e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP---~~~qi~~A~~~G--ad~VELhTG~yA~a~ 160 (239)
T PF03740_consen 97 ELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP---DPEQIEAAKELG--ADRVELHTGPYANAF 160 (239)
T ss_dssp GBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S----HHHHHHHHHTT---SEEEEETHHHHHHS
T ss_pred CcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC---CHHHHHHHHHcC--CCEEEEehhHhhhhc
Confidence 4444333345555554432 2234444443 478888888887 999999999999854
No 450
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=79.51 E-value=61 Score=34.13 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=48.9
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+ .|+++|=++.+. |....-..+--.++++.+.+.+ .+||.+-+ +. .+..++
T Consensus 19 D~~~l~~lv~~~~~-~Gv~gi~v~Gst----------GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv--~~-~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQIE-GGSHAISVGGTS----------GEPGSLTLEERKQAIENAIDQIAGRIPFAPGT--GA-LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECccC----------cccccCCHHHHHHHHHHHHHHhCCCCcEEEEC--Cc-chHHHH
Confidence 44556666666543 488888776432 2111112222234444444333 36776543 22 344678
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++..++.|+|++.+..
T Consensus 85 i~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999998865
No 451
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=79.39 E-value=20 Score=37.32 Aligned_cols=56 Identities=16% Similarity=0.363 Sum_probs=40.4
Q ss_pred cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEE
Q psy9514 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKT 445 (611)
Q Consensus 377 g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKi 445 (611)
..+.+.+.+-|.... ..|+|.||||++-+ ..+.++.+..+|+.++..+++||++-.
T Consensus 21 ~~d~~~i~~~A~~~~-~~GAdiIDVg~~~~------------~~eE~~r~~~~v~~l~~~~~~plsIDT 76 (261)
T PRK07535 21 AKDAAFIQKLALKQA-EAGADYLDVNAGTA------------VEEEPETMEWLVETVQEVVDVPLCIDS 76 (261)
T ss_pred cCCHHHHHHHHHHHH-HCCCCEEEECCCCC------------chhHHHHHHHHHHHHHHhCCCCEEEeC
Confidence 345555666665553 45999999998732 234577888999999888899998864
No 452
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.20 E-value=59 Score=33.93 Aligned_cols=82 Identities=12% Similarity=0.094 Sum_probs=51.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~ 458 (611)
+.+.+.+.++.+. ..|+++|=++.+- |-...-..+--.++++.+.+.++ +|.+- +|. .+..++.+
T Consensus 18 D~~~~~~li~~l~-~~Gv~Gl~~~Gst----------GE~~~Lt~eEr~~l~~~~~~~~~-~vi~g--vg~-~~~~~ai~ 82 (279)
T cd00953 18 DKEKFKKHCENLI-SKGIDYVFVAGTT----------GLGPSLSFQEKLELLKAYSDITD-KVIFQ--VGS-LNLEESIE 82 (279)
T ss_pred CHHHHHHHHHHHH-HcCCcEEEEcccC----------CCcccCCHHHHHHHHHHHHHHcC-CEEEE--eCc-CCHHHHHH
Confidence 6667777777765 3589998776432 22222233333455555555444 34433 221 34578999
Q ss_pred HHHHHHHcCCCEEEEEc
Q psy9514 459 FMPKFRDWGASLITLHG 475 (611)
Q Consensus 459 la~~l~~aGvd~Itvhg 475 (611)
+++.++++|+|+|.+..
T Consensus 83 ~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 83 LARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHcCCCEEEEeC
Confidence 99999999999998765
No 453
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=79.20 E-value=57 Score=34.59 Aligned_cols=83 Identities=16% Similarity=0.006 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+ .|+++|=++.+ .|-...-..+--.++++.+.+.++ +||.+-+-. .+..++
T Consensus 27 D~~~l~~lv~~li~-~Gv~Gi~v~Gs----------tGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~---~~t~~a 92 (309)
T cd00952 27 DLDETARLVERLIA-AGVDGILTMGT----------FGECATLTWEEKQAFVATVVETVAGRVPVFVGATT---LNTRDT 92 (309)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECcc----------cccchhCCHHHHHHHHHHHHHHhCCCCCEEEEecc---CCHHHH
Confidence 55666666666643 58999877643 233333334444566666665553 787765431 244789
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++..++.|+|+|-+..
T Consensus 93 i~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 93 IARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 9999999999999998865
No 454
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=79.17 E-value=44 Score=35.60 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=27.9
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
+++-++++.+. .++||.+.=.+.++.++.+++..+ .+|.+++
T Consensus 211 ~~~~~~~l~~~-~~~pia~dEs~~~~~~~~~~~~~~-~~dvi~~ 252 (324)
T TIGR01928 211 DLSMLDELAKG-TITPICLDESITSLDDARNLIELG-NVKVINI 252 (324)
T ss_pred HHHHHHHHHhh-cCCCEeeCCCcCCHHHHHHHHHcC-CCCEEEe
Confidence 44555555443 467777766777888888877776 5777764
No 455
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.15 E-value=23 Score=37.30 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.9
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
..|+-++||| +++.+.++...| +|.+.+|.
T Consensus 238 ~~~leaSGGI-~~~ni~~yA~tG--VD~Is~Ga 267 (281)
T PRK06106 238 RAITEASGRI-TPETAPAIAASG--VDLISVGW 267 (281)
T ss_pred CceEEEECCC-CHHHHHHHHhcC--CCEEEeCh
Confidence 5679999999 699999999987 99999995
No 456
>KOG2185|consensus
Probab=79.02 E-value=0.84 Score=49.39 Aligned_cols=22 Identities=36% Similarity=0.919 Sum_probs=18.9
Q ss_pred CCCcceeccccCCCCCccccCcc
Q psy9514 114 EQCYVFLQHGYCPMGIACRFGSS 136 (611)
Q Consensus 114 ~~C~~~~~~G~C~~G~~Crf~~~ 136 (611)
..|++| .-|.|.||-+|||-+.
T Consensus 141 kpC~ff-Leg~CRF~enCRfSHG 162 (486)
T KOG2185|consen 141 KPCKFF-LEGRCRFGENCRFSHG 162 (486)
T ss_pred ccchHh-hccccccCcccccccC
Confidence 489999 5699999999999643
No 457
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=78.77 E-value=75 Score=33.34 Aligned_cols=83 Identities=8% Similarity=0.049 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHhcc-cceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcC--CCEEEEEEccccCCchH
Q psy9514 379 NPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS--LPITVKTRTGIHKDNNI 455 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g-~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~--~PvtVKiR~g~~~~~~~ 455 (611)
+.+.+.+..+.+.+ .| +++|=++.+ .|-...-..+.-.++++.+.+.++ +||.+-+- . .+..+
T Consensus 19 D~~~~~~~i~~~i~-~G~v~gi~~~Gs----------tGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~--~-~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNID-KMKVDGLYVGGS----------TGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVG--S-VNLKE 84 (290)
T ss_pred CHHHHHHHHHHHHh-CCCcCEEEECCc----------ccccccCCHHHHHHHHHHHHHHhCCCCcEEEecC--C-CCHHH
Confidence 44555566555532 47 888777632 122222233334455665555443 67766532 1 24567
Q ss_pred HHHHHHHHHHcCCCEEEEEc
Q psy9514 456 IHNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 456 a~~la~~l~~aGvd~Itvhg 475 (611)
+.++++..++.|+|+|.+..
T Consensus 85 ~i~la~~a~~~Gad~v~v~~ 104 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVT 104 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeC
Confidence 89999999999999998854
No 458
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=78.56 E-value=68 Score=34.42 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccC--CchHHHH
Q psy9514 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHK--DNNIIHN 458 (611)
Q Consensus 381 ~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~--~~~~a~~ 458 (611)
+.+.+.+..+. ..||..|-+..+ +..-.+.+++|++.++ -+++++-.+. +...+ .
T Consensus 139 ~~~~~~~~~~~-~~Gf~~~KiKv~------------------~~~d~~~l~~vr~~~g---~~~l~lDaN~~~~~~~a-~ 195 (354)
T cd03317 139 EQLLKQIERYL-EEGYKRIKLKIK------------------PGWDVEPLKAVRERFP---DIPLMADANSAYTLADI-P 195 (354)
T ss_pred HHHHHHHHHHH-HcCCcEEEEecC------------------hHHHHHHHHHHHHHCC---CCeEEEECCCCCCHHHH-H
Confidence 55555555543 248888877642 1223566788888775 3555653222 22344 3
Q ss_pred HHHHHHHcCCCEE
Q psy9514 459 FMPKFRDWGASLI 471 (611)
Q Consensus 459 la~~l~~aGvd~I 471 (611)
+++.|++.++.+|
T Consensus 196 ~~~~l~~~~i~~i 208 (354)
T cd03317 196 LLKRLDEYGLLMI 208 (354)
T ss_pred HHHHhhcCCccEE
Confidence 6777777666554
No 459
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.53 E-value=20 Score=42.88 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhccceeeeccCC---------CCcc-hhhccCCCc---------ccc-------ccccceeeecc----
Q psy9514 327 VLTKCTQLLEEQMAVDFVDVNLG---------CPIE-FIYKQGSGS---------GLL-------QRANLFGVQLC---- 376 (611)
Q Consensus 327 ~~~~~a~~l~~~~~v~~idln~g---------cp~~-~~~~~~~~~---------~l~-------~~~~~~ivQi~---- 376 (611)
.+.++|.... ..++|+|+||++ ||.. ..-++.+++ +++ ..+.++.+-+.
T Consensus 552 ~f~~aA~~a~-~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~ 630 (765)
T PRK08255 552 DFVAAARRAA-EAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDW 630 (765)
T ss_pred HHHHHHHHHH-HcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccc
Confidence 3455665544 468999999988 8863 333333332 110 12345555444
Q ss_pred ---cCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCc
Q psy9514 377 ---GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDN 453 (611)
Q Consensus 377 ---g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~ 453 (611)
|.++++....++.++ ..|+|.|+++.|....... ..++. .+.....+.+++.+++||++- |.-
T Consensus 631 ~~~g~~~~~~~~~~~~l~-~~g~d~i~vs~g~~~~~~~-~~~~~------~~~~~~~~~ik~~~~~pv~~~---G~i--- 696 (765)
T PRK08255 631 VEGGNTPDDAVEIARAFK-AAGADLIDVSSGQVSKDEK-PVYGR------MYQTPFADRIRNEAGIATIAV---GAI--- 696 (765)
T ss_pred cCCCCCHHHHHHHHHHHH-hcCCcEEEeCCCCCCcCCC-CCcCc------cccHHHHHHHHHHcCCEEEEe---CCC---
Confidence 346788888888885 4699999998775311110 01111 111234567788788887663 211
Q ss_pred hHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 454 NIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 454 ~~a~~la~~l~~aGvd~ItvhgR 476 (611)
.+....-+.+++.++|+|.+ ||
T Consensus 697 ~~~~~a~~~l~~g~~D~v~~-gR 718 (765)
T PRK08255 697 SEADHVNSIIAAGRADLCAL-AR 718 (765)
T ss_pred CCHHHHHHHHHcCCcceeeE-cH
Confidence 12223444566677998765 44
No 460
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=78.38 E-value=27 Score=37.17 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEcc
Q psy9514 422 RANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGR 476 (611)
Q Consensus 422 r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR 476 (611)
.++.+.+-++.+++..+.||-|-+..-. +...+.++.+.+.|+++|.+++.
T Consensus 46 ~~~~l~~~i~~~~~~t~~pfgvn~~~~~----~~~~~~~~~~~~~~v~~v~~~~g 96 (307)
T TIGR03151 46 PPDVVRKEIRKVKELTDKPFGVNIMLLS----PFVDELVDLVIEEKVPVVTTGAG 96 (307)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEeeecCC----CCHHHHHHHHHhCCCCEEEEcCC
Confidence 5788999999999888889888765421 23346677778899999887543
No 461
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=78.22 E-value=50 Score=38.61 Aligned_cols=183 Identities=13% Similarity=0.217 Sum_probs=95.3
Q ss_pred eeecccC-chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHH-HHHHHHHHHhhcCCCEEEEEEccc
Q psy9514 372 GVQLCGN-NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI-LQSVITCMNEVSSLPITVKTRTGI 449 (611)
Q Consensus 372 ivQi~g~-~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~-l~eIv~av~~~~~~PvtVKiR~g~ 449 (611)
.+.|||- +++++..+++. |+|.|=+.+--+++.. =.++. +.+|++.+...--.+|.|- .
T Consensus 4 ~vKICGit~~eda~~a~~~-----gaD~iGfIf~~~SpR~----------V~~~~~a~~i~~~l~~~~v~~VgVf----v 64 (610)
T PRK13803 4 KIKICGIKDSALISKAVDM-----LPDFIGFIFYEKSPRF----------VGNKFLAPNLEKAIRKAGGRPVGVF----V 64 (610)
T ss_pred eEEECCCCcHHHHHHHHHc-----CCCEEEEEecCCCCCC----------CCHHHHHHHHHHhCCCCCCCEEEEE----e
Confidence 4778888 55666665443 6666665532221111 12445 5566665532100122222 1
Q ss_pred cCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhh----hcccCchhhhhcchhhHhc--CCceEEec
Q psy9514 450 HKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ----LCSRDNNIIHNFMPKFRDW--GASLITLH 523 (611)
Q Consensus 450 ~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~----~~~~~~~~~~~~~~~l~~~--G~~~itih 523 (611)
+ +....+.+.+++.+.|.|.+||-... +.-+++..+.. +++............+.+. -++.+.+.
T Consensus 65 ~---~~~~~i~~~~~~~~ld~vQLHG~e~~------~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlD 135 (610)
T PRK13803 65 N---ESAKAMLKFSKKNGIDFVQLHGAESK------AEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFD 135 (610)
T ss_pred C---CCHHHHHHHHHhcCCCEEEECCCCCc------ccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEc
Confidence 1 23446777788999999999995420 00123333321 1111111000001112221 26777776
Q ss_pred ccccc-ccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCcc--EEEEcHHhhhCC
Q psy9514 524 GRTRE-QRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS--GVMIGRGALIKP 587 (611)
Q Consensus 524 grtr~-g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD--~VmIGRgaL~dP 587 (611)
..+.. |+.-...||..+... ..+.|+|..||| +++.+.+++... ... +|=+-.|.=..|
T Consensus 136 s~~~~~GGtG~~fdw~~~~~~---~~~~p~iLAGGL-~peNV~~ai~~~-~p~~~gVDvsSGvE~~p 197 (610)
T PRK13803 136 NKTKIYGGSGKSFDWEKFYNY---NFKFPFFLSGGL-SPTNFDRIINLT-HPQILGIDVSSGFEDSP 197 (610)
T ss_pred CCCCCCCCCCCccChHHhhhc---ccCCcEEEEeCC-CHHHHHHHHhhh-CCCceEEEccCcccCCC
Confidence 54432 333445589877643 235699999999 689999988764 455 776666655444
No 462
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=78.12 E-value=18 Score=38.22 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=28.2
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
++.+.++||| +++.+.++...| +|.+.+|.--.
T Consensus 241 ~~~leaSGGI-~~~ni~~yA~tG--VD~Is~galth 273 (290)
T PRK06559 241 RSRIECSGNI-DMTTISRFRGLA--IDYVSSGSLTH 273 (290)
T ss_pred ceEEEEECCC-CHHHHHHHHhcC--CCEEEeCcccc
Confidence 5778899999 699999999987 99999996433
No 463
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=77.87 E-value=97 Score=32.98 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=30.1
Q ss_pred cHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 536 DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 536 ~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
+++-++.+.+. .++||.+.=.+.++.|+..++..+ .+|.|.+
T Consensus 205 ~~~~~~~l~~~-~~~Pia~DEs~~~~~d~~~~~~~~-a~d~v~i 246 (320)
T PRK02714 205 QFDEMLQLSQD-YQTPIALDESVANLAQLQQCYQQG-WRGIFVI 246 (320)
T ss_pred cHHHHHHHHHh-CCCCEEECCccCCHHHHHHHHHcC-CCCEEEE
Confidence 45555665443 478888877888888888888876 5776654
No 464
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=77.84 E-value=99 Score=32.70 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=37.0
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCCCH-HHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDILSY-EDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~s~-eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-+|+.++++.+. .++|++.=|+--.+ +++.+++..| +-=|=|++.+..
T Consensus 193 Ld~~~L~~I~~~-v~vPLVlHGgSG~~~e~~~~ai~~G--i~KiNi~T~l~~ 241 (288)
T TIGR00167 193 LDFERLEEIQKY-VNLPLVLHGGSGIPDEEIKKAISLG--VVKVNIDTELQI 241 (288)
T ss_pred cCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcC--CeEEEcChHHHH
Confidence 478888888665 48999988876666 6777888887 888888877644
No 465
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=77.78 E-value=23 Score=38.53 Aligned_cols=108 Identities=15% Similarity=0.144 Sum_probs=66.3
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCC-EEEEEcccccc--ccccCcChhHH
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGAS-LITLHGRTREQ--RYTKQADWDYI 491 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd-~ItvhgR~r~q--r~~~~adw~~i 491 (611)
.|+..+.+..++.+ +.+ .+.||.+|.-+ ..+.++....++.+...|.. .+-+|.++|.- .|
T Consensus 190 Iga~~~~n~~LL~~----va~-t~kPVllk~G~--~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y--------- 253 (352)
T PRK13396 190 VGARNMQNFSLLKK----VGA-QDKPVLLKRGM--AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQY--------- 253 (352)
T ss_pred ECcccccCHHHHHH----HHc-cCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCC---------
Confidence 47778888777543 332 58899988544 34556777788888888885 44445543211 11
Q ss_pred HHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEe-----c-CCCCHHHHH
Q psy9514 492 EKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGN-----G-DILSYEDYT 565 (611)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgn-----G-gI~s~eda~ 565 (611)
.....|+..+..+.+. ..+|||.. | .=.++.-+.
T Consensus 254 ---------------------------------------~~~~~dl~ai~~lk~~-~~lPVi~DpsH~~G~sd~~~~~a~ 293 (352)
T PRK13396 254 ---------------------------------------TRNTLDLSVIPVLRSL-THLPIMIDPSHGTGKSEYVPSMAM 293 (352)
T ss_pred ---------------------------------------CCCCcCHHHHHHHHHh-hCCCEEECCcccCCcHHHHHHHHH
Confidence 1133467777776444 47899764 3 112345555
Q ss_pred HHHHcCCCccEEEEc
Q psy9514 566 ESLKKSPSISGVMIG 580 (611)
Q Consensus 566 ~~l~~G~~aD~VmIG 580 (611)
.++..| +||+||=
T Consensus 294 AAva~G--AdGliIE 306 (352)
T PRK13396 294 AAIAAG--TDSLMIE 306 (352)
T ss_pred HHHhhC--CCeEEEE
Confidence 667777 9999984
No 466
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=77.76 E-value=8.3 Score=38.21 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=40.4
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.+..+.++|++.|.+.+-.|... ..-.+.+.++.+.+ ++.-.||.|.|++..+.+.| +|.|.-
T Consensus 56 ev~~l~~aGadIIAlDaT~R~Rp---~~l~~li~~i~~~~----~l~MADist~ee~~~A~~~G--~D~I~T 118 (192)
T PF04131_consen 56 EVDALAEAGADIIALDATDRPRP---ETLEELIREIKEKY----QLVMADISTLEEAINAAELG--FDIIGT 118 (192)
T ss_dssp HHHHHHHCT-SEEEEE-SSSS-S---S-HHHHHHHHHHCT----SEEEEE-SSHHHHHHHHHTT---SEEE-
T ss_pred HHHHHHHcCCCEEEEecCCCCCC---cCHHHHHHHHHHhC----cEEeeecCCHHHHHHHHHcC--CCEEEc
Confidence 34567789999998877554422 33445666665543 45566999999999999998 998764
No 467
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=77.72 E-value=54 Score=33.10 Aligned_cols=37 Identities=5% Similarity=-0.115 Sum_probs=29.0
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~ 594 (611)
+.. |..-.+.+++++.++...| ||.|-|. |.+++++.
T Consensus 157 ~tk-IlaAS~r~~~~v~~~~~~G--~d~vTip------~~vl~~l~ 193 (213)
T TIGR00875 157 DTE-VIAASVRHPRHVLEAALIG--ADIATMP------LDVMQQLF 193 (213)
T ss_pred CCE-EEEeccCCHHHHHHHHHcC--CCEEEcC------HHHHHHHH
Confidence 445 5567899999999999988 9999988 55555553
No 468
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=77.59 E-value=77 Score=33.46 Aligned_cols=82 Identities=13% Similarity=0.098 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+ .|+++|=++.+- |-...-..+.=.++++.+.+.+ .+||.+-+ | .+..++
T Consensus 26 D~~~l~~li~~l~~-~Gv~Gi~~~Gst----------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv--~--~~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLAP-YGAAALFAAGGT----------GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA--G--GGTAQA 90 (303)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECcCC----------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEec--C--CCHHHH
Confidence 45566666666543 588998776432 2222223333345555555444 37887765 4 256789
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.+++.|++++.+..
T Consensus 91 i~~~~~a~~~Gadav~~~p 109 (303)
T PRK03620 91 IEYAQAAERAGADGILLLP 109 (303)
T ss_pred HHHHHHHHHhCCCEEEECC
Confidence 9999999999999998754
No 469
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.48 E-value=19 Score=38.09 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=28.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
.++.+.++||| +++.+.++...| +|.+.+|.-..
T Consensus 245 ~~v~ieaSGGI-~~~ni~~yA~tG--vD~Is~galt~ 278 (289)
T PRK07896 245 PTVLLESSGGL-TLDTAAAYAETG--VDYLAVGALTH 278 (289)
T ss_pred CCEEEEEECCC-CHHHHHHHHhcC--CCEEEeChhhc
Confidence 46789999999 699999999987 99999995433
No 470
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=77.46 E-value=69 Score=33.39 Aligned_cols=83 Identities=16% Similarity=0.079 Sum_probs=48.8
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc-C-CCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS-S-LPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~-~-~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+..+.+. ..|+++|=++.+- |-...-..+.-.++++.+.+.+ + +||.+-+ +. .+..++
T Consensus 17 D~~~~~~~i~~l~-~~Gv~Gi~~~Gst----------GE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv--~~-~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQI-ENGTDAIVVVGTT----------GESPTLSHEEHKKVIEFVVDLVNGRVPVIAGT--GS-NATEEA 82 (285)
T ss_pred CHHHHHHHHHHHH-HcCCCEEEECccC----------cccccCCHHHHHHHHHHHHHHhCCCCeEEEeC--CC-ccHHHH
Confidence 4455666666654 2588888765321 2122222222234444444433 2 6766653 22 245678
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.+++.|+|+|.+..
T Consensus 83 i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEEcC
Confidence 9999999999999998865
No 471
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=77.38 E-value=8.5 Score=40.76 Aligned_cols=87 Identities=16% Similarity=0.197 Sum_probs=54.1
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~ 531 (611)
+.+...++++.+.+.|++.|.+-|.+.+-.. +
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~~GttGE~~~------------------------------------------------L 54 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVVLGTTGESPT------------------------------------------------L 54 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCccchh------------------------------------------------c
Confidence 3356778899999999999999888855320 1
Q ss_pred cCCccHHHHHHHHhhC-CCCcEEE-ecCCCCHHHHHHHH---HcCCCccEEEEcHHhhhCCc
Q psy9514 532 TKQADWDYIEKCAQLC-SPAPLYG-NGDILSYEDYTESL---KKSPSISGVMIGRGALIKPW 588 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~-~~iPVIg-nGgI~s~eda~~~l---~~G~~aD~VmIGRgaL~dP~ 588 (611)
+.....+.+..+++.. ..+|||+ .|..++ +++.++. +.- ++|++|+--..+.+|.
T Consensus 55 s~eEr~~v~~~~v~~~~grvpviaG~g~~~t-~eai~lak~a~~~-Gad~il~v~PyY~k~~ 114 (299)
T COG0329 55 TLEERKEVLEAVVEAVGGRVPVIAGVGSNST-AEAIELAKHAEKL-GADGILVVPPYYNKPS 114 (299)
T ss_pred CHHHHHHHHHHHHHHHCCCCcEEEecCCCcH-HHHHHHHHHHHhc-CCCEEEEeCCCCcCCC
Confidence 1111122233333333 3588885 555544 4444332 233 4999999999999986
No 472
>PRK14565 triosephosphate isomerase; Provisional
Probab=77.38 E-value=15 Score=37.77 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=36.9
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++|+-.|.| +++.+.+++..- ++||+.||++.| ||.-|.+|-+
T Consensus 188 ~~~~IlYGGSV-~~~N~~~l~~~~-~iDG~LvG~asl-~~~~f~~ii~ 232 (237)
T PRK14565 188 SKSHIIYGGSV-NQENIRDLKSIN-QLSGVLVGSASL-DVDSFCKIIQ 232 (237)
T ss_pred CCceEEEcCcc-CHhhHHHHhcCC-CCCEEEEechhh-cHHHHHHHHH
Confidence 46899988888 688888888864 699999999998 8887877753
No 473
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=77.10 E-value=9 Score=40.35 Aligned_cols=87 Identities=16% Similarity=0.174 Sum_probs=53.2
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEeccccccccc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRY 531 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~ 531 (611)
+.....++++.+.+.|++.|.+-|.+.+... +
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~------------------------------------------------L 50 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTSGEPGS------------------------------------------------L 50 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCccccc------------------------------------------------C
Confidence 3355778888888999999999888755330 1
Q ss_pred cCCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHH---HcCCCccEEEEcHHhhhCC
Q psy9514 532 TKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESL---KKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 532 ~~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l---~~G~~aD~VmIGRgaL~dP 587 (611)
+.....+.++.+++.. .++|||+.=+-.|.+++.++. +.- ++|+||+.-..+..|
T Consensus 51 s~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~-Gad~v~v~pP~y~~~ 109 (294)
T TIGR02313 51 TLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEA-GADAAMVIVPYYNKP 109 (294)
T ss_pred CHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHc-CCCEEEEcCccCCCC
Confidence 1111123333333322 368988443435565554432 232 499999999888887
No 474
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=77.08 E-value=1e+02 Score=32.51 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=34.7
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCC-CHHHHHHHHHcCCCccEEEEcHHhhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDIL-SYEDYTESLKKSPSISGVMIGRGALI 585 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~-s~eda~~~l~~G~~aD~VmIGRgaL~ 585 (611)
-+|+.++++.+. .++|++.=|+=- +.+++.+++..| +-=|=|++.+..
T Consensus 189 Ld~~~L~~i~~~-~~vPLVlHGgSG~~~e~~~~ai~~G--i~KiNi~T~~~~ 237 (284)
T PRK12857 189 LDFDRLAKIKEL-VNIPIVLHGSSGVPDEAIRKAISLG--VRKVNIDTNIRE 237 (284)
T ss_pred CCHHHHHHHHHH-hCCCEEEeCCCCCCHHHHHHHHHcC--CeEEEeCcHHHH
Confidence 478888888665 489988766544 456666788887 888888877644
No 475
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=76.86 E-value=32 Score=34.53 Aligned_cols=94 Identities=10% Similarity=0.114 Sum_probs=56.6
Q ss_pred HHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhh
Q psy9514 427 QSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506 (611)
Q Consensus 427 ~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~ 506 (611)
.+.++++++.++..+.+.+=....-+.+.+.++++.|.+.++.+|- |
T Consensus 81 ~~~i~~lr~~~g~~~~l~lDaN~~~~~~~a~~~~~~l~~~~i~~iE-------e-------------------------- 127 (229)
T cd00308 81 IERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWIE-------E-------------------------- 127 (229)
T ss_pred HHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHhhhcCCCeEE-------C--------------------------
Confidence 6777888887764333332222112346788899988887766542 1
Q ss_pred hcchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 507 ~~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
.....+++.++++.+. ..+||.+.=.+.++++..+++..+ .+|.|.+
T Consensus 128 ------------------------P~~~~d~~~~~~L~~~-~~~pIa~dEs~~~~~~~~~~~~~~-~~d~~~~ 174 (229)
T cd00308 128 ------------------------PCAPDDLEGYAALRRR-TGIPIAADESVTTVDDALEALELG-AVDILQI 174 (229)
T ss_pred ------------------------CCCccCHHHHHHHHhh-CCCCEEeCCCCCCHHHHHHHHHcC-CCCEEec
Confidence 1122245555555443 467877744577788887777766 5777765
No 476
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=76.51 E-value=38 Score=34.80 Aligned_cols=127 Identities=13% Similarity=0.047 Sum_probs=81.5
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc-Cchh---hhhcchhhHhcCCceEEeccccc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR-DNNI---IHNFMPKFRDWGASLITLHGRTR 527 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~-~~~~---~~~~~~~l~~~G~~~itihgrtr 527 (611)
..++..+.+..++.+|++.||||-|.-. | .-.-.-+..+..+++. .|.. ..++.....+.-.+.+|+-.=.+
T Consensus 22 ~~Pd~v~aA~~a~~aGAdgITvHlReDr-R---HI~d~Dv~~L~~~~~~~lNlE~a~~~em~~ia~~~kP~~vtLVPE~r 97 (239)
T PRK05265 22 NYPDPVRAALIAEQAGADGITVHLREDR-R---HIRDRDVRLLRETLKTELNLEMAATEEMLDIALEVKPHQVTLVPEKR 97 (239)
T ss_pred CCCCHHHHHHHHHHcCCCEEEecCCCCc-c---cCCHHHHHHHHHhcCCCEEeccCCCHHHHHHHHHCCCCEEEECCCCC
Confidence 3466788899999999999999998522 1 1112334455555542 2222 45677888888899999855544
Q ss_pred cc-----cccCCccHHHHHHHHhh----CCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCC
Q psy9514 528 EQ-----RYTKQADWDYIEKCAQL----CSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587 (611)
Q Consensus 528 ~g-----~~~~~a~~~~i~~~~k~----~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP 587 (611)
++ ++.-..+.+.+..+++. ...+.++. | -++++++...+.| +|.|-+=+|.+++-
T Consensus 98 ~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFi--d-P~~~qi~~A~~~G--Ad~VELhTG~yA~a 161 (239)
T PRK05265 98 EELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFI--D-PDPEQIEAAAEVG--ADRIELHTGPYADA 161 (239)
T ss_pred CCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe--C-CCHHHHHHHHHhC--cCEEEEechhhhcC
Confidence 43 33222334444443322 22344444 2 4788888888887 99999999999885
No 477
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=76.34 E-value=85 Score=32.77 Aligned_cols=83 Identities=14% Similarity=0.006 Sum_probs=50.1
Q ss_pred chHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhc--CCCEEEEEEccccCCchHH
Q psy9514 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS--SLPITVKTRTGIHKDNNII 456 (611)
Q Consensus 379 ~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~--~~PvtVKiR~g~~~~~~~a 456 (611)
+.+.+.+.++.+.+ .|+++|=+|.+- |-...-..+.=.++++.+.+.+ .+||.+-+- . .+..++
T Consensus 20 D~~~l~~~i~~l~~-~Gv~gi~~~Gs~----------GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~--~-~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLIA-NGTDGLVVVGTT----------GESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG--S-NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHHH-cCCCEEEECCcC----------CccccCCHHHHHHHHHHHHHHhCCCCcEEeecC--C-chHHHH
Confidence 55666666666643 588888776322 2222222222234445444444 267665432 2 245789
Q ss_pred HHHHHHHHHcCCCEEEEEc
Q psy9514 457 HNFMPKFRDWGASLITLHG 475 (611)
Q Consensus 457 ~~la~~l~~aGvd~Itvhg 475 (611)
.++++.++++|+++|.+..
T Consensus 86 i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 86 IELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 9999999999999998854
No 478
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.13 E-value=26 Score=36.96 Aligned_cols=31 Identities=10% Similarity=0.166 Sum_probs=26.8
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGRG 582 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRg 582 (611)
...+.++|+| |.+.+.++...| +|.+.+|.-
T Consensus 237 ~~~leaSGgI-~~~ni~~yA~tG--VD~Is~gal 267 (281)
T PRK06543 237 RAIVEASGNV-NLNTVGAIASTG--VDVISVGAL 267 (281)
T ss_pred CeEEEEECCC-CHHHHHHHHhcC--CCEEEeCcc
Confidence 3478899999 699999999987 999999953
No 479
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=76.11 E-value=78 Score=34.03 Aligned_cols=48 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhCCCCcEEEecCCC----------------------CHHHHHHHHHcCCCccEEEEcHHhh
Q psy9514 535 ADWDYIEKCAQLCSPAPLYGNGDIL----------------------SYEDYTESLKKSPSISGVMIGRGAL 584 (611)
Q Consensus 535 a~~~~i~~~~k~~~~iPVIgnGgI~----------------------s~eda~~~l~~G~~aD~VmIGRgaL 584 (611)
-+|+.++++.+...++|++.=|+=. +.+++.+++..| +-=|=|++.+.
T Consensus 203 Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~G--I~KINi~Tdl~ 272 (321)
T PRK07084 203 LRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSA--VCKINIDSDGR 272 (321)
T ss_pred cCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcC--CceeccchHHH
Confidence 4677777766654357877666552 457888888887 77777776553
No 480
>KOG1813|consensus
Probab=75.86 E-value=0.92 Score=47.32 Aligned_cols=28 Identities=36% Similarity=0.879 Sum_probs=23.2
Q ss_pred ccCCcccccCCCCCCCCCCCCCCCcCChhHH
Q psy9514 74 DCYCPFLKDSTLEQTCKYGEKCKFVHDKNVF 104 (611)
Q Consensus 74 ~~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~y 104 (611)
...|..+-.+ +.|-|||.|+|.||-..|
T Consensus 186 pDicKdykeT---gycg~gdSckFlh~r~Dy 213 (313)
T KOG1813|consen 186 PDICKDYKET---GYCGYGDSCKFLHDRSDY 213 (313)
T ss_pred chhhhhhHhh---Ccccccchhhhhhhhhhc
Confidence 4567777666 679999999999999877
No 481
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=75.83 E-value=38 Score=36.52 Aligned_cols=153 Identities=18% Similarity=0.154 Sum_probs=82.1
Q ss_pred cCCCeEEEEecCC-------ChhhHHHHHHHHhhhccceeeeccCCCCcchhhccCCCcccc----c-----cc------
Q psy9514 311 ESEDLFGVQLCGN-------NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL----Q-----RA------ 368 (611)
Q Consensus 311 ~~e~~~~vQi~g~-------~p~~~~~~a~~l~~~~~v~~idln~gcp~~~~~~~~~~~~l~----~-----~~------ 368 (611)
....+++|.+.++ .++.+.+.++.+.+. +|++.+|..||...........+.+ . ..
T Consensus 132 ~~~~~i~vsi~~~~~~~~~~~~~dy~~~~~~~~~~--ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~ 209 (335)
T TIGR01036 132 RYKGPIGINIGKNKDTPSEDAKEDYAACLRKLGPL--ADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVH 209 (335)
T ss_pred cCCCcEEEEEeCCCCCCcccCHHHHHHHHHHHhhh--CCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcc
Confidence 3456788888665 356667777766653 7999999999974321111111111 1 12
Q ss_pred -cceeeecccCch-HHHHHHHHHHHHhcccceEEe-ccC--C-Cccc-eeccccccccccCh--HHHHHHHHHHHhhc--
Q psy9514 369 -NLFGVQLCGNNP-YVLTKCTQLLEEQMVVDFVDV-NLG--C-PIEF-IYKQGSGSGLLQRA--NILQSVITCMNEVS-- 437 (611)
Q Consensus 369 -~~~ivQi~g~~p-~~~~~aA~~l~~~~g~D~IEL-N~g--C-P~~~-v~~~g~GsaLl~r~--~~l~eIv~av~~~~-- 437 (611)
.|+.+-+.-+.. +++...|+.+. ..|+|+|=+ |-- . +... ....++|+ |-..+ ....++++.+.+.+
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~-~~GadGi~l~NT~~~~~~~~~~~~~~~~GG-lSG~~i~p~al~~v~~~~~~~~~ 287 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLV-ELGIDGVIATNTTVSRSLVQGPKNSDETGG-LSGKPLQDKSTEIIRRLYAELQG 287 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHH-HhCCcEEEEECCCCccccccCccccCCCCc-ccCHHHHHHHHHHHHHHHHHhCC
Confidence 788888887743 36666666654 458999854 421 0 1000 00112231 11111 24566777777666
Q ss_pred CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEE
Q psy9514 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLH 474 (611)
Q Consensus 438 ~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itvh 474 (611)
++||+. +|.-.+.+ +.++.+ .+|+++|.|.
T Consensus 288 ~ipiig---~GGI~~~~---da~e~l-~aGA~~Vqv~ 317 (335)
T TIGR01036 288 RLPIIG---VGGISSAQ---DALEKI-RAGASLLQIY 317 (335)
T ss_pred CCCEEE---ECCCCCHH---HHHHHH-HcCCcHHHhh
Confidence 367654 23222223 333333 4789887764
No 482
>PLN02561 triosephosphate isomerase
Probab=75.65 E-value=15 Score=38.01 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=34.7
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcHHhhhCCchHHHHHc
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKE 595 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGRgaL~dP~lf~ei~~ 595 (611)
.+++|+-.|.|. ++.+.+++..- ++||+.||++.|. |. |.+|-+
T Consensus 203 ~~i~ILYGGSV~-~~N~~~l~~~~-~iDG~LVG~ASL~-~~-F~~ii~ 246 (253)
T PLN02561 203 ATTRIIYGGSVT-GANCKELAAQP-DVDGFLVGGASLK-PE-FIDIIK 246 (253)
T ss_pred ccceEEEeCCcC-HHHHHHHhcCC-CCCeEEEehHhhH-HH-HHHHHH
Confidence 368999999994 66666666664 6999999999998 66 777754
No 483
>KOG0538|consensus
Probab=75.31 E-value=6.8 Score=41.46 Aligned_cols=43 Identities=16% Similarity=0.400 Sum_probs=35.2
Q ss_pred CCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEE
Q psy9514 533 KQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMI 579 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmI 579 (611)
..-+|..|..+.+ ..+.||+.- ||.+-|||..+++.| ++|+++
T Consensus 208 ~Sl~W~Di~wLr~-~T~LPIvvK-Gilt~eDA~~Ave~G--~~GIIV 250 (363)
T KOG0538|consen 208 PSLSWKDIKWLRS-ITKLPIVVK-GVLTGEDARKAVEAG--VAGIIV 250 (363)
T ss_pred CCCChhhhHHHHh-cCcCCeEEE-eecccHHHHHHHHhC--CceEEE
Confidence 4457888888755 468999965 577899999999998 999998
No 484
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=75.21 E-value=11 Score=39.53 Aligned_cols=85 Identities=12% Similarity=0.128 Sum_probs=51.9
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCchhhhhcchhhHhcCCceEEecccccccccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYT 532 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~~~~~~~~~l~~~G~~~itihgrtr~g~~~ 532 (611)
.+...++++.+.+.|++.|.+-|.+.+..+ .+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~------------------------------------------------Ls 51 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFS------------------------------------------------LT 51 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCccc------------------------------------------------CC
Confidence 345677888888999999998887765431 11
Q ss_pred CCccHHHHHHHHhhC-CCCcEEEecCCCCHHHHHHHHH---cCCCccEEEEcHHhhhCC
Q psy9514 533 KQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLK---KSPSISGVMIGRGALIKP 587 (611)
Q Consensus 533 ~~a~~~~i~~~~k~~-~~iPVIgnGgI~s~eda~~~l~---~G~~aD~VmIGRgaL~dP 587 (611)
.......++.+++.. .++|||+.-+. +.+++.++.+ .. ++|+||+--..+..|
T Consensus 52 ~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~a~~a~~~-Gad~v~~~pP~y~~~ 108 (289)
T cd00951 52 PDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAYAQAAEKA-GADGILLLPPYLTEA 108 (289)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 111112233333332 36898864445 5666655432 33 499999987777665
No 485
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=75.17 E-value=24 Score=38.82 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=32.8
Q ss_pred cccccCeeecCcEEeccCCCCCCHHH-HHHHHHcCCCEEEecCcccch
Q psy9514 249 NSEKKKIDWQGKLYLSPLTTVGNLPF-RRLCKKWGADITCSEMAVATE 295 (611)
Q Consensus 249 p~ei~~l~l~nrivlAPMt~~gnlpf-Rrl~~~~Ga~li~tEm~~~~~ 295 (611)
..+..+|+|+|++++|.=+-..+... +++. +.|++.++|..+..++
T Consensus 12 st~~~Gl~l~NP~i~ASgp~t~~~e~~~~~~-~~g~GAVV~KTi~~~~ 58 (385)
T PLN02495 12 SVTVNGLKMPNPFVIGSGPPGTNYTVMKRAF-DEGWGGVIAKTVSLDA 58 (385)
T ss_pred eEEECCEEcCCCcEeCCccCCCCHHHHHHHH-hcCCeEEEeccccCCc
Confidence 46778999999999984333345555 5544 4599999998776543
No 486
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=74.82 E-value=82 Score=31.98 Aligned_cols=65 Identities=9% Similarity=0.057 Sum_probs=38.3
Q ss_pred cCCceE-EeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 515 WGASLI-TLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 515 ~G~~~i-tihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
+|++.| .+-||-.+....+......+.++.+....-.-|..-.+.+.+++.+++..| +|.|-+.=
T Consensus 123 aGa~yIspyvgR~~~~g~dg~~~i~~i~~~~~~~~~~tkILaAS~r~~~~v~~~~~~G--~d~vTip~ 188 (220)
T PRK12653 123 AGAEYVAPYVNRIDAQGGSGIQTVTDLQQLLKMHAPQAKVLAASFKTPRQALDCLLAG--CESITLPL 188 (220)
T ss_pred cCCcEEEeecChHhhcCCChHHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHcC--CCEEECCH
Confidence 344444 233443332222223344445555443233455677899999999999987 99998873
No 487
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=74.62 E-value=26 Score=36.92 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=27.3
Q ss_pred CCCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 548 SPAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 548 ~~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
.++.+-++||| +++.+.++...| +|.+++|-
T Consensus 235 ~~~~leaSGGI-~~~ni~~yA~tG--vD~Is~ga 265 (284)
T PRK06096 235 PHCTLSLAGGI-NLNTLKNYADCG--IRLFITSA 265 (284)
T ss_pred CCeEEEEECCC-CHHHHHHHHhcC--CCEEEECc
Confidence 46788899999 699999999987 99999983
No 488
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=74.55 E-value=11 Score=39.78 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=22.9
Q ss_pred CchHHHHHHHHHHHcCCCEEEEEcccccc
Q psy9514 452 DNNIIHNFMPKFRDWGASLITLHGRTREQ 480 (611)
Q Consensus 452 ~~~~a~~la~~l~~aGvd~ItvhgR~r~q 480 (611)
+.+...++++.+.+.|++.|.+-|.+.+.
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~GstGE~ 54 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGTGEF 54 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCCcCc
Confidence 33557788889999999999988887553
No 489
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=74.55 E-value=29 Score=38.22 Aligned_cols=66 Identities=15% Similarity=0.092 Sum_probs=42.2
Q ss_pred cccceEEeccCC-CccceeccccccccccChHHHHHHHHHHHhhcCCCE--EEEEEccccCCchHHHHHHHHHHHcCCCE
Q psy9514 394 MVVDFVDVNLGC-PIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPI--TVKTRTGIHKDNNIIHNFMPKFRDWGASL 470 (611)
Q Consensus 394 ~g~D~IELN~gC-P~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~Pv--tVKiR~g~~~~~~~a~~la~~l~~aGvd~ 470 (611)
.||.++-|.++. | . . | ...++.-.+.|++||+++|..+ .|-.-.++ +.+.|.+++++|++.++.+
T Consensus 171 ~Gf~~~Kik~~~g~---~--~--g---~~~~~~di~~v~avReavG~d~~l~vDaN~~~--~~~~Ai~~~~~le~~~l~w 238 (394)
T PRK15440 171 MGFIGGKMPLHHGP---A--D--G---DAGLRKNAAMVADMREKVGDDFWLMLDCWMSL--DVNYATKLAHACAPYGLKW 238 (394)
T ss_pred CCCCEEEEcCCcCc---c--c--c---hHHHHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHHHHHhhhcCCcc
Confidence 489998886531 1 0 0 0 1234556788899999886544 33322222 4467999999999988776
Q ss_pred E
Q psy9514 471 I 471 (611)
Q Consensus 471 I 471 (611)
|
T Consensus 239 i 239 (394)
T PRK15440 239 I 239 (394)
T ss_pred e
Confidence 5
No 490
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=74.47 E-value=34 Score=34.66 Aligned_cols=132 Identities=11% Similarity=-0.007 Sum_probs=66.6
Q ss_pred CEEEEEEccccC-CchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhcccCch-------hhhhcchh
Q psy9514 440 PITVKTRTGIHK-DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNN-------IIHNFMPK 511 (611)
Q Consensus 440 PvtVKiR~g~~~-~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~~~~-------~~~~~~~~ 511 (611)
|+..++-.+.-. +.....+-++.++++|++.||+.---..--.-..-+...|..++...++... ....+++.
T Consensus 4 ~~~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~ 83 (228)
T PTZ00170 4 PLKAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDD 83 (228)
T ss_pred CCCCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHH
Confidence 555555544322 2234556677888888888887532100000000123334444433222111 12345567
Q ss_pred hHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEEE
Q psy9514 512 FRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVM 578 (611)
Q Consensus 512 l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~Vm 578 (611)
+.++|++.+|+|.-+...+ -...+..+ ++.....-++-.--++.+++..++... .+|.|+
T Consensus 84 ~~~~Gad~itvH~ea~~~~-----~~~~l~~i-k~~G~~~gval~p~t~~e~l~~~l~~~-~vD~Vl 143 (228)
T PTZ00170 84 FAKAGASQFTFHIEATEDD-----PKAVARKI-REAGMKVGVAIKPKTPVEVLFPLIDTD-LVDMVL 143 (228)
T ss_pred HHHcCCCEEEEeccCCchH-----HHHHHHHH-HHCCCeEEEEECCCCCHHHHHHHHccc-hhhhHH
Confidence 8899999999997532210 01223333 333333334433445888888887443 477664
No 491
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=74.17 E-value=8.9 Score=40.13 Aligned_cols=28 Identities=14% Similarity=0.338 Sum_probs=22.0
Q ss_pred CchHHHHHHHHHHHc-CCCEEEEEccccc
Q psy9514 452 DNNIIHNFMPKFRDW-GASLITLHGRTRE 479 (611)
Q Consensus 452 ~~~~a~~la~~l~~a-Gvd~ItvhgR~r~ 479 (611)
+.+...++++.+.+. |++.|.+-|.+.+
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~GstGE 47 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGSTGE 47 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcCCcC
Confidence 335577888888888 9999998887755
No 492
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=73.79 E-value=2.6 Score=44.23 Aligned_cols=54 Identities=26% Similarity=0.723 Sum_probs=40.7
Q ss_pred cCCcccccCCCCCCCCCCCCCCCcCChhHHhhcCCCCCCCCCcceec--cccCCCCCccccCccccCc
Q psy9514 75 CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQ--HGYCPMGIACRFGSSHLDE 140 (611)
Q Consensus 75 ~lC~~~~~~~~~~~C~~g~~C~f~Hd~~~yl~~k~~d~~~~C~~~~~--~G~C~~G~~Crf~~~h~~~ 140 (611)
--|.+|..- +.|..|..|.|.|-. |..-.+.|..|.. +|.||+|..|+|. |...
T Consensus 135 ~~c~~Fs~~---G~cs~g~~c~~~h~d-------p~~~~~~~~~~~~~~~~f~p~g~~c~~~--H~~~ 190 (285)
T COG5084 135 PPCRSFSLK---GSCSSGPSCGYSHID-------PDSFAGNCDQYSGATYGFCPLGASCKFS--HTLK 190 (285)
T ss_pred CCccccccc---ceeccCCCCCccccC-------cccccccccccCcccccccCCCCccccc--cccc
Confidence 357777332 579999999999965 3334578888874 9999999999997 6543
No 493
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=73.51 E-value=42 Score=36.24 Aligned_cols=52 Identities=15% Similarity=0.107 Sum_probs=36.1
Q ss_pred cccccccChHHHHHHHHHHHhhcCCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEE
Q psy9514 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITL 473 (611)
Q Consensus 415 ~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~Itv 473 (611)
.|+..+++..++.++-+ ++.||.+|.-++ .+.++....++.+...|..-|.+
T Consensus 182 IgAr~~~N~~LL~~va~-----~~kPViLk~G~~--~ti~E~l~A~e~i~~~GN~~viL 233 (335)
T PRK08673 182 IGARNMQNFDLLKEVGK-----TNKPVLLKRGMS--ATIEEWLMAAEYILAEGNPNVIL 233 (335)
T ss_pred ECcccccCHHHHHHHHc-----CCCcEEEeCCCC--CCHHHHHHHHHHHHHcCCCeEEE
Confidence 47888888888755542 588999985443 34566677777788888854444
No 494
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=73.50 E-value=39 Score=36.08 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEE-------------
Q psy9514 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTR------------- 446 (611)
Q Consensus 380 p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR------------- 446 (611)
.+.+.+.++.+. ..|+..|-| +|.| ..++..|+.-.+.-..+.+.|+.+++... .+.|-.=
T Consensus 60 id~l~~~~~~~~-~~Gi~~v~l-Fgv~---~~Kd~~gs~A~~~~g~v~~air~iK~~~p-dl~vi~DVcLc~YT~hGHcG 133 (322)
T PRK13384 60 ESALADEIERLY-ALGIRYVMP-FGIS---HHKDAKGSDTWDDNGLLARMVRTIKAAVP-EMMVIPDICFCEYTDHGHCG 133 (322)
T ss_pred HHHHHHHHHHHH-HcCCCEEEE-eCCC---CCCCCCcccccCCCChHHHHHHHHHHHCC-CeEEEeeeecccCCCCCcee
Confidence 344555555543 358888877 4446 45788899888888899999999998762 2222211
Q ss_pred ---ccccCCchHHHHHHH---HHHHcCCCEEEEE
Q psy9514 447 ---TGIHKDNNIIHNFMP---KFRDWGASLITLH 474 (611)
Q Consensus 447 ---~g~~~~~~~a~~la~---~l~~aGvd~Itvh 474 (611)
-|.-++..+...+++ ...++|+|.|.=+
T Consensus 134 il~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPS 167 (322)
T PRK13384 134 VLHNDEVDNDATVENLVKQSVTAAKAGADMLAPS 167 (322)
T ss_pred eccCCcCccHHHHHHHHHHHHHHHHcCCCeEecc
Confidence 111122233333333 4579999998754
No 495
>KOG2494|consensus
Probab=73.36 E-value=1.8 Score=45.79 Aligned_cols=52 Identities=27% Similarity=0.565 Sum_probs=37.9
Q ss_pred CcccCCcccccCCCCCCCCCCCC-CCCcCChhHHhhcCCCCCC----CCCcceeccccCCCCCccccCc
Q psy9514 72 PEDCYCPFLKDSTLEQTCKYGEK-CKFVHDKNVFMKSKPEDIS----EQCYVFLQHGYCPMGIACRFGS 135 (611)
Q Consensus 72 ~~~~lC~~~~~~~~~~~C~~g~~-C~f~Hd~~~yl~~k~~d~~----~~C~~~~~~G~C~~G~~Crf~~ 135 (611)
-....|+.|.++ .|..||+ |||.|--. -.+++ .-|.-| ..|.|-.-- |||+.
T Consensus 35 l~~eVCReF~rn----~C~R~d~~CkfaHP~~------~~~V~~g~v~aC~Ds-~kgrCsR~n-CkylH 91 (331)
T KOG2494|consen 35 LTLEVCREFLRN----TCSRGDRECKFAHPPK------NCQVSNGRVIACFDS-QKGRCSREN-CKYLH 91 (331)
T ss_pred hHHHHHHHHHhc----cccCCCccccccCCCC------CCCccCCeEEEEecc-ccCccCccc-ceecC
Confidence 356789999997 6999999 99999532 22232 246666 568898765 99995
No 496
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=73.11 E-value=28 Score=33.96 Aligned_cols=79 Identities=19% Similarity=0.124 Sum_probs=48.6
Q ss_pred cchhhHhcCCceEEeccccccccccCCccHHHHHHHHhhCCCCcEEE-ecCCCCHHHHHHHHHcCCCccEEEEcHH--hh
Q psy9514 508 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYG-NGDILSYEDYTESLKKSPSISGVMIGRG--AL 584 (611)
Q Consensus 508 ~~~~l~~~G~~~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIg-nGgI~s~eda~~~l~~G~~aD~VmIGRg--aL 584 (611)
+++.+.++|++.+++|+.+. +.....+.+.+++. +++++. .=+..|++++.+++..+ +|.|.++-+ .-
T Consensus 69 ~~~~~~~aGad~i~~h~~~~------~~~~~~~i~~~~~~-g~~~~v~~~~~~t~~e~~~~~~~~--~d~v~~~~~~~~~ 139 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAP------LSTIKKAVKAAKKY-GKEVQVDLIGVEDPEKRAKLLKLG--VDIVILHRGIDAQ 139 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCC------HHHHHHHHHHHHHc-CCeEEEEEeCCCCHHHHHHHHHCC--CCEEEEcCccccc
Confidence 35677889999999997431 11122233333443 566655 36788999999877766 999988532 11
Q ss_pred h--CCchHHHHHc
Q psy9514 585 I--KPWIFQEIKE 595 (611)
Q Consensus 585 ~--dP~lf~ei~~ 595 (611)
. .++.++++++
T Consensus 140 ~~~~~~~~~~i~~ 152 (202)
T cd04726 140 AAGGWWPEDDLKK 152 (202)
T ss_pred ccCCCCCHHHHHH
Confidence 1 2555555553
No 497
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=72.93 E-value=31 Score=36.61 Aligned_cols=30 Identities=20% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCcEEEecCCCCHHHHHHHHHcCCCccEEEEcH
Q psy9514 549 PAPLYGNGDILSYEDYTESLKKSPSISGVMIGR 581 (611)
Q Consensus 549 ~iPVIgnGgI~s~eda~~~l~~G~~aD~VmIGR 581 (611)
++.+.++||| +.+.+.++...| +|.+.+|.
T Consensus 252 ~~~ieaSGGI-~~~ni~~yA~tG--VD~Is~ga 281 (296)
T PRK09016 252 RALLEVSGNV-TLETLREFAETG--VDFISVGA 281 (296)
T ss_pred CeEEEEECCC-CHHHHHHHHhcC--CCEEEeCc
Confidence 6788899999 699999999987 99999995
No 498
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=72.71 E-value=1.1e+02 Score=31.94 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=54.1
Q ss_pred cceeeecccCchHHHHHHHHHHHHhcccceEEeccCCCccceeccccccccccChHHHHHHHHHHHhhcCCCEEEEEEcc
Q psy9514 369 NLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTG 448 (611)
Q Consensus 369 ~~~ivQi~g~~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~GsaLl~r~~~l~eIv~av~~~~~~PvtVKiR~g 448 (611)
.++++++.+.+.++..+.++.++ ..|+|+|-+-. |+.. .-..+-+.+..+.|.+.++.||.+--..+
T Consensus 71 ~~vi~gv~~~st~~~i~~a~~a~-~~Gad~v~v~~--P~~~----------~~s~~~l~~y~~~ia~~~~~pi~iYn~P~ 137 (289)
T PF00701_consen 71 VPVIAGVGANSTEEAIELARHAQ-DAGADAVLVIP--PYYF----------KPSQEELIDYFRAIADATDLPIIIYNNPA 137 (289)
T ss_dssp SEEEEEEESSSHHHHHHHHHHHH-HTT-SEEEEEE--STSS----------SCCHHHHHHHHHHHHHHSSSEEEEEEBHH
T ss_pred eEEEecCcchhHHHHHHHHHHHh-hcCceEEEEec--cccc----------cchhhHHHHHHHHHHhhcCCCEEEEECCC
Confidence 46788999999999999999986 46999998843 4221 12345577778888888899998864321
Q ss_pred ccCCchHHHHHHHHHHH
Q psy9514 449 IHKDNNIIHNFMPKFRD 465 (611)
Q Consensus 449 ~~~~~~~a~~la~~l~~ 465 (611)
.. ......+++.+|.+
T Consensus 138 ~t-g~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 138 RT-GNDLSPETLARLAK 153 (289)
T ss_dssp HH-SSTSHHHHHHHHHT
T ss_pred cc-ccCCCHHHHHHHhc
Confidence 11 11223344555555
No 499
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=72.68 E-value=1.2e+02 Score=32.80 Aligned_cols=187 Identities=11% Similarity=0.067 Sum_probs=0.0
Q ss_pred eeeecccC---chHHHHHHHHHHHHhcccceEEeccCCCccceeccccc--------------cccccChHHHHHHHHHH
Q psy9514 371 FGVQLCGN---NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSG--------------SGLLQRANILQSVITCM 433 (611)
Q Consensus 371 ~ivQi~g~---~p~~~~~aA~~l~~~~g~D~IELN~gCP~~~v~~~g~G--------------saLl~r~~~l~eIv~av 433 (611)
+|+.++.| +.+.+.+..+.+. .+|+|+|-++.--+-......... -.+.++..+..+-.+.+
T Consensus 3 iIAEig~NH~Gdl~~A~~lI~~A~-~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L 81 (329)
T TIGR03569 3 IIAEAGVNHNGSLELAKKLVDAAA-EAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHREL 81 (329)
T ss_pred EEEEeCCCccCcHHHHHHHHHHHH-HhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHH
Q ss_pred Hhhc---CCCEEEEEEccccCCchHHHHHHHHHHHcCCCEEEEEccccccccccCcChhHHHHHhhhccc--------Cc
Q psy9514 434 NEVS---SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSR--------DN 502 (611)
Q Consensus 434 ~~~~---~~PvtVKiR~g~~~~~~~a~~la~~l~~aGvd~ItvhgR~r~qr~~~~adw~~i~~~~~~~~~--------~~ 502 (611)
.+.+ |+++..- +.-..-+..|++.|++++-|..+.-. +|..+..++..=+- .-
T Consensus 82 ~~~~~~~Gi~~~st---------pfd~~svd~l~~~~v~~~KIaS~~~~-------n~pLL~~~A~~gkPvilStGmatl 145 (329)
T TIGR03569 82 KEYCESKGIEFLST---------PFDLESADFLEDLGVPRFKIPSGEIT-------NAPLLKKIARFGKPVILSTGMATL 145 (329)
T ss_pred HHHHHHhCCcEEEE---------eCCHHHHHHHHhcCCCEEEECccccc-------CHHHHHHHHhcCCcEEEECCCCCH
Q ss_pred hhhhhcchhhHhcCCc---eEEeccccccccccCCccHHHHHHHHhhCCCCcEEEecCCCCHHHHHHHHHcCCCccEE
Q psy9514 503 NIIHNFMPKFRDWGAS---LITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGV 577 (611)
Q Consensus 503 ~~~~~~~~~l~~~G~~---~itihgrtr~g~~~~~a~~~~i~~~~k~~~~iPVIgnGgI~s~eda~~~l~~G~~aD~V 577 (611)
..+...+..++..|.. .+.+|.-+..+......++..|..+.+.+ ++||...+--....-...++..| |+.|
T Consensus 146 ~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f-~~pVG~SdHt~G~~~~~aAvalG--A~iI 220 (329)
T TIGR03569 146 EEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF-DLPVGYSDHTLGIEAPIAAVALG--ATVI 220 (329)
T ss_pred HHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh-CCCEEECCCCccHHHHHHHHHcC--CCEE
No 500
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=72.58 E-value=13 Score=39.36 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHcCCCEEEEEccccc
Q psy9514 453 NNIIHNFMPKFRDWGASLITLHGRTRE 479 (611)
Q Consensus 453 ~~~a~~la~~l~~aGvd~ItvhgR~r~ 479 (611)
.+...++++.+.+.|++.|.+-|.+.+
T Consensus 28 ~~~l~~lv~~li~~Gv~Gi~v~GstGE 54 (309)
T cd00952 28 LDETARLVERLIAAGVDGILTMGTFGE 54 (309)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccc
Confidence 345678888899999999998888755
Done!