Your job contains 1 sequence.
>psy9514
MDASGVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAKKKFKKNKQVLKGQ
NKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFL
QHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYN
FEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVL
DTDIIKIKNSEKKKIDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS
PQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS
GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL
QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ
RYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI
EKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD
IYAIVWKWRYP
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9514
(611 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0032819 - symbol:CG10463 species:7227 "Drosophila ... 663 3.7e-99 2
ZFIN|ZDB-GENE-040426-1260 - symbol:dus3l "dihydrouridine ... 583 5.5e-92 2
UNIPROTKB|Q96G46 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 582 8.0e-91 2
UNIPROTKB|F1SBU5 - symbol:LOC100513458 "Uncharacterized p... 574 1.3e-90 2
UNIPROTKB|E1BGZ1 - symbol:DUS3L "Uncharacterized protein"... 572 1.9e-89 2
UNIPROTKB|F1PS34 - symbol:LOC100856098 "Uncharacterized p... 565 6.3e-89 2
MGI|MGI:2147092 - symbol:Dus3l "dihydrouridine synthase 3... 570 2.7e-88 2
RGD|1563228 - symbol:Dus3l "dihydrouridine synthase 3-lik... 560 1.0e-86 2
UNIPROTKB|F1NGP4 - symbol:DUS3L "Uncharacterized protein"... 417 6.4e-72 2
WB|WBGene00021377 - symbol:Y37E11B.5 species:6239 "Caenor... 321 1.5e-64 3
SGD|S000004393 - symbol:DUS3 "Dihydrouridine synthase" sp... 429 4.5e-59 3
DICTYBASE|DDB_G0292686 - symbol:dus3l "tRNA-dihydrouridin... 348 7.8e-55 2
POMBASE|SPAC16.04 - symbol:dus3 "tRNA dihydrouridine synt... 410 1.1e-48 2
ASPGD|ASPL0000051905 - symbol:AN0818 species:162425 "Emer... 241 1.1e-45 3
UNIPROTKB|K7EQU9 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 343 1.7e-35 2
UNIPROTKB|A4RLF4 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 340 3.1e-35 2
CGD|CAL0005565 - symbol:orf19.1565 species:5476 "Candida ... 252 4.7e-34 2
UNIPROTKB|Q5ALL3 - symbol:DUS3 "tRNA-dihydrouridine(47) s... 252 4.7e-34 2
TIGR_CMR|CJE_0118 - symbol:CJE_0118 "tRNA-dihydrouridine ... 222 2.3e-28 2
UNIPROTKB|K7ER20 - symbol:DUS3L "tRNA-dihydrouridine(47) ... 275 3.4e-23 1
TIGR_CMR|NSE_0373 - symbol:NSE_0373 "putative tRNA-dihydr... 183 4.4e-21 2
TIGR_CMR|ECH_0758 - symbol:ECH_0758 "putative tRNA-dihydr... 200 6.7e-21 2
UNIPROTKB|Q3A9L8 - symbol:CHY_2369 "tRNA-dihydrouridine s... 221 1.2e-19 2
TIGR_CMR|CHY_2369 - symbol:CHY_2369 "putative TIM-barrel ... 221 1.2e-19 2
TIGR_CMR|APH_0575 - symbol:APH_0575 "putative tRNA-dihydr... 173 3.3e-19 2
TIGR_CMR|GSU_1005 - symbol:GSU_1005 "dihydrouridine synth... 177 5.4e-19 2
UNIPROTKB|Q81VW4 - symbol:BA_0075 "tRNA-dihydrouridine sy... 178 2.8e-18 2
TIGR_CMR|BA_0075 - symbol:BA_0075 "TIM-barrel protein, pu... 178 2.8e-18 2
UNIPROTKB|Q9KV66 - symbol:dusB "tRNA-dihydrouridine synth... 190 2.1e-17 2
TIGR_CMR|VC_0291 - symbol:VC_0291 "NifR3/Smm1 family prot... 190 2.1e-17 2
UNIPROTKB|Q8EJR8 - symbol:dusB "tRNA-dihydrouridine synth... 166 4.1e-17 2
TIGR_CMR|SO_0394 - symbol:SO_0394 "conserved hypothetical... 166 4.1e-17 2
UNIPROTKB|O53835 - symbol:dus "Probable tRNA-dihydrouridi... 162 2.4e-16 2
UNIPROTKB|Q607L4 - symbol:MCA1745 "tRNA-dihydrouridine sy... 156 3.8e-16 2
UNIPROTKB|Q87VS1 - symbol:dusB "tRNA-dihydrouridine synth... 158 4.2e-16 2
TIGR_CMR|SPO_2089 - symbol:SPO_2089 "tRNA-dihydrouridine ... 145 2.4e-15 2
UNIPROTKB|Q489F6 - symbol:CPS_0550 "tRNA-dihydrouridine s... 141 1.0e-14 2
TIGR_CMR|CPS_0550 - symbol:CPS_0550 "NifR3/Smm1 family pr... 141 1.0e-14 2
UNIPROTKB|P0ABT5 - symbol:dusB "tRNA-dihydrouridine synth... 172 2.7e-14 2
DICTYBASE|DDB_G0291360 - symbol:dus4l "tRNA-dihydrouridin... 141 2.7e-14 2
POMBASE|SPBC36B7.04 - symbol:SPBC36B7.04 "tRNA dihydrouri... 194 4.2e-13 2
TAIR|locus:2155528 - symbol:AT5G67220 species:3702 "Arabi... 161 6.1e-13 2
FB|FBgn0031238 - symbol:CG3645 species:7227 "Drosophila m... 167 8.5e-13 2
DICTYBASE|DDB_G0278803 - symbol:dus1l "tRNA-dihydrouridin... 159 1.2e-12 2
POMBASE|SPCC777.15 - symbol:SPCC777.15 "tRNA dihydrouridi... 144 1.9e-12 2
UNIPROTKB|E2RKU2 - symbol:DUS2L "Uncharacterized protein"... 123 7.7e-12 2
CGD|CAL0003746 - symbol:orf19.966 species:5476 "Candida a... 133 1.3e-11 2
SGD|S000004397 - symbol:DUS4 "Dihydrouridine synthase" sp... 137 1.9e-11 2
UNIPROTKB|I3LES5 - symbol:DUS2L "Uncharacterized protein"... 122 2.6e-11 2
UNIPROTKB|E2RRJ8 - symbol:DUS4L "Uncharacterized protein"... 118 2.6e-11 2
TAIR|locus:2114713 - symbol:AT3G49640 species:3702 "Arabi... 119 3.7e-11 2
UNIPROTKB|O95620 - symbol:DUS4L "tRNA-dihydrouridine(20a/... 126 7.8e-11 2
ZFIN|ZDB-GENE-100922-233 - symbol:dus2l "dihydrouridine s... 146 9.8e-11 2
UNIPROTKB|E1C4F6 - symbol:DUS2L "Uncharacterized protein"... 116 1.5e-10 2
ZFIN|ZDB-GENE-040801-233 - symbol:dus4l "dihydrouridine s... 121 2.9e-10 2
MGI|MGI:1919166 - symbol:Dus4l "dihydrouridine synthase 4... 123 3.5e-10 2
UNIPROTKB|D4A0T1 - symbol:Dus4l "Protein Dus4l" species:1... 124 4.1e-10 2
RGD|1311445 - symbol:Dus4l "dihydrouridine synthase 4-lik... 124 4.3e-10 2
UNIPROTKB|E1C6D2 - symbol:DUS1L "Uncharacterized protein"... 176 4.3e-10 2
POMBASE|SPBC1709.06 - symbol:dus2 "tRNA dihydrouridine sy... 147 4.5e-10 2
UNIPROTKB|E1BWI8 - symbol:DUS1L "Uncharacterized protein"... 176 4.6e-10 2
UNIPROTKB|F1NHN2 - symbol:DUS4L "tRNA-dihydrouridine synt... 119 7.7e-10 2
SGD|S000004545 - symbol:DUS1 "Dihydrouridine synthase" sp... 176 1.1e-09 2
UNIPROTKB|J3QQZ0 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 167 1.2e-09 1
UNIPROTKB|J3QLE4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 167 1.3e-09 1
UNIPROTKB|E2R9L8 - symbol:DUS1L "Uncharacterized protein"... 169 2.4e-09 1
RGD|708389 - symbol:Pp3111 "PP3111 protein" species:10116... 167 3.4e-09 1
UNIPROTKB|J9NYR0 - symbol:DUS1L "Uncharacterized protein"... 169 3.5e-09 1
UNIPROTKB|Q6P1R4 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 167 3.9e-09 1
MGI|MGI:1915980 - symbol:Dus1l "dihydrouridine synthase 1... 167 4.0e-09 1
DICTYBASE|DDB_G0277081 - symbol:DDB_G0277081 "tRNA-dihydr... 138 5.7e-09 2
UNIPROTKB|E1BH75 - symbol:DUS1L "Uncharacterized protein"... 158 8.2e-09 1
UNIPROTKB|J3QKP9 - symbol:DUS1L "tRNA-dihydrouridine(16/1... 117 1.1e-08 2
DICTYBASE|DDB_G0283877 - symbol:dus2l "tRNA-dihydrouridin... 124 1.3e-08 2
CGD|CAL0004455 - symbol:orf19.1404 species:5476 "Candida ... 162 1.4e-08 1
WB|WBGene00009452 - symbol:F36A2.2 species:6239 "Caenorha... 162 1.7e-08 1
MGI|MGI:1913619 - symbol:Dus2l "dihydrouridine synthase 2... 125 2.2e-08 2
RGD|1305612 - symbol:Dus2l "dihydrouridine synthase 2-lik... 125 2.7e-08 2
UNIPROTKB|Q0VC60 - symbol:DUS2L "Uncharacterized protein"... 119 3.5e-08 2
UNIPROTKB|G3N340 - symbol:DUS1L "Uncharacterized protein"... 158 3.9e-08 1
UNIPROTKB|Q8EAJ0 - symbol:dusA "tRNA-dihydrouridine synth... 141 4.8e-08 2
TIGR_CMR|SO_3912 - symbol:SO_3912 "TIM-barrel protein, yj... 141 4.8e-08 2
UNIPROTKB|Q9NX74 - symbol:DUS2L "tRNA-dihydrouridine(20) ... 112 5.9e-08 2
UNIPROTKB|Q8EFG7 - symbol:dusC "tRNA-dihydrouridine synth... 152 7.1e-08 1
TIGR_CMR|SO_2006 - symbol:SO_2006 "NifR3/Smm1 family prot... 152 7.1e-08 1
UNIPROTKB|Q9KUX9 - symbol:dusA "tRNA-dihydrouridine synth... 136 7.8e-08 2
TIGR_CMR|VC_0379 - symbol:VC_0379 "TIM-barrel protein, yj... 136 7.8e-08 2
ZFIN|ZDB-GENE-030131-1435 - symbol:dus1l "dihydrouridine ... 155 8.8e-08 2
WB|WBGene00013201 - symbol:Y54E5A.6 species:6239 "Caenorh... 119 1.4e-07 2
FB|FBgn0032750 - symbol:CG10495 species:7227 "Drosophila ... 104 1.9e-07 2
ASPGD|ASPL0000054271 - symbol:AN0956 species:162425 "Emer... 155 2.0e-07 2
UNIPROTKB|Q83D40 - symbol:CBU_0904 "tRNA-dihydrouridine s... 140 3.3e-07 2
TIGR_CMR|CBU_0904 - symbol:CBU_0904 "TIM-barrel protein, ... 140 3.3e-07 2
SGD|S000005298 - symbol:SMM1 "Dihydrouridine synthase" sp... 123 5.0e-07 2
UNIPROTKB|P32695 - symbol:dusA "tRNA-dihydrouridine synth... 136 5.4e-07 2
UNIPROTKB|Q487W0 - symbol:CPS_0906 "tRNA-dihydrouridine s... 127 6.7e-07 2
TIGR_CMR|CPS_0906 - symbol:CPS_0906 "NifR3/Smm1 family pr... 127 6.7e-07 2
UNIPROTKB|G4MUR1 - symbol:MGG_08825 "tRNA-dihydrouridine ... 148 7.3e-07 1
FB|FBgn0030554 - symbol:CG1434 species:7227 "Drosophila m... 121 9.9e-07 2
UNIPROTKB|Q81ZD5 - symbol:BAS0319 "tRNA-dihydrouridine sy... 141 1.4e-06 1
WARNING: Descriptions of 21 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0032819 [details] [associations]
symbol:CG10463 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270
GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 EMBL:AY119278 ProteinModelPortal:Q8MRT5
SMR:Q8MRT5 STRING:Q8MRT5 PaxDb:Q8MRT5 PRIDE:Q8MRT5
FlyBase:FBgn0032819 InParanoid:Q8MRT5 OrthoDB:EOG49CNPV
ArrayExpress:Q8MRT5 Bgee:Q8MRT5 Uniprot:Q8MRT5
Length = 604
Score = 663 (238.4 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 148/380 (38%), Positives = 218/380 (57%)
Query: 1 MDASGVAKIKQEFIVE--DHVKVLSIECVNETDKRKLEEL-EVEDDGTAXXXXXXXXXXX 57
MD SG+ IK E++V D + ++T+KRK EE EVE
Sbjct: 1 MD-SGICYIKPEYLVTEADGGSAAANTENSDTNKRKREEGGEVE---AGEKRKWDKKERK 56
Query: 58 XGQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCY 117
GQNK R P F + C L D T + C C++VHD + ++ +K ED+ +CY
Sbjct: 57 RGQNKNR-PVFKDERYSHLCHSLIDGTGGEPCSLAN-CRYVHDLDAYLAAKGEDLGPECY 114
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
V+ GYC G++CRF +H DE G N+ +ED ++ T T N +++E++ LRKH
Sbjct: 115 VYTTKGYCARGVSCRFAKAHTDEQGRNLKREDYDEKAPPT----TCNGVSSELQVRLRKH 170
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET--K 235
Y+F +S+++ K + ++ K + + ++ + E E T +++ +++T K
Sbjct: 171 EYDFSRSKELIKMAEKLRDARKLMEQ--QEKEKNLSEETGEKQPSETTEILDAEKQTDSK 228
Query: 236 SGPV-----LDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEM 290
S P +D D++ KL LSPLTT+GNLPFRR+CK++GADITC EM
Sbjct: 229 SKPTATGCAIDDSAIGRDADHKPAVDFREKLVLSPLTTLGNLPFRRICKEFGADITCGEM 288
Query: 291 AVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGC 350
A A LLK QEWAL KRH+SED+FGVQLCGNNP +L + Q++ E VDF+D+N+GC
Sbjct: 289 ACAQPLLKGMGQEWALTKRHQSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGC 348
Query: 351 PIEFIYKQGSGSGLLQRANL 370
PI+ IY+QG GS L++R N+
Sbjct: 349 PIDLIYQQGGGSALMRRTNI 368
Score = 403 (146.9 bits), Expect = 9.9e-36, P = 9.9e-36
Identities = 72/136 (52%), Positives = 97/136 (71%)
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
Q ++FGVQLCGNNP +L + Q++ E VDF+D+N+GCPI+ IY+QG GS L++R NI
Sbjct: 309 QSEDVFGVQLCGNNPNMLNQAAQVIHETAQVDFIDLNIGCPIDLIYQQGGGSALMRRTNI 368
Query: 426 LQ-SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTK 484
L+ +V +C LP TVK RTGI+ D ++ H +P +WGAS +TLHGR+REQRYTK
Sbjct: 369 LELTVRSCAALSDRLPFTVKMRTGIYADKSVAHELLPLVEEWGASAVTLHGRSREQRYTK 428
Query: 485 QADWDYIEKCAQLCSR 500
A+W YIE+CA R
Sbjct: 429 HANWAYIEECAAKAKR 444
Score = 341 (125.1 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 61/97 (62%), Positives = 73/97 (75%)
Query: 501 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILS 560
D ++ H +P +WGAS +TLHGR+REQRYTK A+W YIE+CA P+ GNGDILS
Sbjct: 396 DKSVAHELLPLVEEWGASAVTLHGRSREQRYTKHANWAYIEECAAKAKRMPVIGNGDILS 455
Query: 561 YEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKK 597
YEDY E +P +S VMIGRGALIKPWIFQEIKEK+
Sbjct: 456 YEDYMERRTLAPHVSSVMIGRGALIKPWIFQEIKEKQ 492
>ZFIN|ZDB-GENE-040426-1260 [details] [associations]
symbol:dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
ZFIN:ZDB-GENE-040426-1260 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOGENOM:HOG000240610
HOVERGEN:HBG062413 EMBL:BC058066 IPI:IPI00486931 RefSeq:NP_956968.1
UniGene:Dr.81366 ProteinModelPortal:Q6PEH0 STRING:Q6PEH0
GeneID:393647 KEGG:dre:393647 InParanoid:Q6PEH0 NextBio:20814655
ArrayExpress:Q6PEH0 Uniprot:Q6PEH0
Length = 660
Score = 583 (210.3 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
Identities = 157/513 (30%), Positives = 256/513 (49%)
Query: 5 GVAKIKQEFIV--EDHVKVLSI---ECVNETD----KRKLEELEVEDDGTAXXXXXXXXX 55
G A IK +F+ E + LS NE D + + +++ +E++G
Sbjct: 11 GAAAIKSQFLTSKEKFHEFLSSGRSSQKNEEDPDGGEPEKKKIRLENEGETAEQEKKKIK 70
Query: 56 XXXGQNKARGPTFVTKPEDCYCPFLKDSTLEQ---TCKYGEKCKFVHDKNVFMKSKPEDI 112
GQNK+R P KP L S +++ C YGEKC+F+HD + ++ +K D+
Sbjct: 71 MR-GQNKSR-PH--VKPHTYEDKRLCTSIIQERDSVCPYGEKCRFLHDVSEYLSTKAADL 126
Query: 113 SEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNK-TVNMLANEVR 171
+QC++F G CP G+ CR+ +H + N+V ++ ++ + G + T N+L E++
Sbjct: 127 GDQCHLFNTLGKCPYGLTCRYAKAHTSADLKNMVNTEL---YRASAGRENTTNLLDKELQ 183
Query: 172 QDLRKHTYNFEKSEKICKE-NKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK- 229
+ LRK F ++ K ++A + E+ + K++D + + EE TD+ K
Sbjct: 184 KRLRKKQQRFPGADAFLKSISRAPRPEHNSREQRGKHEDQR--QKHEE-QREQTDEQSKN 240
Query: 230 VQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSE 289
+++T++ + D Q + P + RR + I
Sbjct: 241 TEDQTQT----NNQRENANIQSKNTED-QRQSVEDPSKNGSDSANRRETQV--PPIKTIG 293
Query: 290 MAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLG 349
+++K P E + + L + CGN P+ C ++ D +
Sbjct: 294 PITDADIIKLRPCEKKQVDFRDKLYLAPLTTCGNLPFRRV-C-----KRFGADITCGEMA 347
Query: 350 CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCP 406
+ Q S LL+R +LFGVQL G P +T+C +LL + + VDFVD+N GCP
Sbjct: 348 MCTNLLQGQASEWALLKRHASEDLFGVQLEGCFPDTMTRCAELLNQNIDVDFVDINSGCP 407
Query: 407 IEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW 466
I+ +YK+G G GL+ R + + ++ MN V +P+TVK RTG+ +++NI H +P+ + W
Sbjct: 408 IDLVYKKGGGCGLMTRTSKFEQIVRGMNSVLDVPLTVKIRTGVQQNSNIAHKLIPEMKKW 467
Query: 467 GASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
G SLITLHGR+REQRYTK ADWDYI CAQL +
Sbjct: 468 GVSLITLHGRSREQRYTKLADWDYINTCAQLAA 500
Score = 353 (129.3 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
Identities = 62/102 (60%), Positives = 80/102 (78%)
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
+++NI H +P+ + WG SLITLHGR+REQRYTK ADWDYI CAQL +P PL+GNGDIL
Sbjct: 452 QNSNIAHKLIPEMKKWGVSLITLHGRSREQRYTKLADWDYINTCAQLAAPVPLFGNGDIL 511
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
SYED ++ + +SG+M+ RGALIKPW+F EIKE + +DI
Sbjct: 512 SYEDAMKA--RETGVSGIMVARGALIKPWLFTEIKESRHWDI 551
>UNIPROTKB|Q96G46 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:AC011499 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
EMBL:AK023958 EMBL:BC004549 EMBL:BC008362 EMBL:BC009973
EMBL:AL365411 IPI:IPI00186125 IPI:IPI00640947 IPI:IPI00784107
RefSeq:NP_001155091.1 RefSeq:NP_064560.2 UniGene:Hs.284297
ProteinModelPortal:Q96G46 SMR:Q96G46 IntAct:Q96G46 STRING:Q96G46
PhosphoSite:Q96G46 DMDM:110808212 PaxDb:Q96G46 PRIDE:Q96G46
DNASU:56931 Ensembl:ENST00000309061 Ensembl:ENST00000320699
GeneID:56931 KEGG:hsa:56931 UCSC:uc002mdc.3 UCSC:uc002mdd.3
CTD:56931 GeneCards:GC19M005737 HGNC:HGNC:26920 HPA:HPA041854
HPA:HPA041944 neXtProt:NX_Q96G46 PharmGKB:PA142671938
HOGENOM:HOG000240610 HOVERGEN:HBG062413 InParanoid:Q96G46
OMA:MSEWALL OrthoDB:EOG4K6G43 GenomeRNAi:56931 NextBio:62471
ArrayExpress:Q96G46 Bgee:Q96G46 CleanEx:HS_DUS3L
Genevestigator:Q96G46 GermOnline:ENSG00000141994 Uniprot:Q96G46
Length = 650
Score = 582 (209.9 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 123/325 (37%), Positives = 180/325 (55%)
Query: 59 GQNKARGPTFVTK-PEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCY 117
GQNK R T ++ CP L + + C +G++C+F+HD ++++KP D+ +C
Sbjct: 105 GQNKGRPHVKPTNYDKNRLCPSLIQESAAK-CFFGDRCRFLHDVGRYLETKPADLGPRCV 163
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKH 177
+F G CP G+ CRF +HL G N+V+E++ + T N L ++Q LRK
Sbjct: 164 LFETFGRCPYGVTCRFAGAHLRPEGQNLVQEELAA--RGTQPPSIRNGLDKALQQQLRKR 221
Query: 178 TYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIE--GREEINT-PNTDDVIKVQEET 234
FE++E+ + + + + E G +++ P T T
Sbjct: 222 EVRFERAEQALRRFSQGPTPAAAVPEGTAAEGAPRQENCGAQQVPAGPGTSTPPSSPVRT 281
Query: 235 KSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ D D D +GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T
Sbjct: 282 -CGPLTDEDVVRLRPCEKKRLDIRGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCT 340
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LL+ EWAL+KRH+ ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 341 NLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDL 400
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNN 379
+YK+G G L+ R+ F + G N
Sbjct: 401 VYKKGGGCALMNRSTKFQQIVRGMN 425
Score = 405 (147.6 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 82/180 (45%), Positives = 112/180 (62%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 312 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQMSEWALLKRHQCEDIFGVQLEGAF 370
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MN+V +
Sbjct: 371 PDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVLDV 430
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW YIE+C Q S
Sbjct: 431 PLTVKIRTGVQERVNLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAAS 490
Score = 343 (125.8 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 58/99 (58%), Positives = 78/99 (78%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +P+ RDWG +L+TLHGR+REQRYTK ADW YIE+C Q SP PL+GNGDILS+E
Sbjct: 445 NLAHRLLPELRDWGVALVTLHGRSREQRYTKLADWQYIEECVQAASPMPLFGNGDILSFE 504
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 505 DANRAMQTG--VTGIMIARGALLKPWLFTEIKEQRHWDI 541
>UNIPROTKB|F1SBU5 [details] [associations]
symbol:LOC100513458 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:CU928983 EMBL:FP089464
RefSeq:XP_003123132.1 RefSeq:XP_003123140.1 UniGene:Ssc.48250
UniGene:Ssc.82799 Ensembl:ENSSSCT00000014768
Ensembl:ENSSSCT00000014775 GeneID:100512091 GeneID:100513458
KEGG:ssc:100512091 KEGG:ssc:100513458 Uniprot:F1SBU5
Length = 652
Score = 574 (207.1 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 127/331 (38%), Positives = 181/331 (54%)
Query: 59 GQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
GQNK+R PT K CP L + + C YG++C+F+HD ++++++KP D+ +
Sbjct: 108 GQNKSRPHVKPTHYDKNR--LCPSLIQESASK-CFYGDRCRFLHDVSLYLETKPADLGPR 164
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
C +F G CP G+ CRF +HL G N+V+E +++ N L ++Q LR
Sbjct: 165 CVLFETFGRCPYGVTCRFAGAHLGPEGQNLVQEGLVQ------APNIRNGLDKALQQQLR 218
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIK-VQEET 234
K FE+SE+ ++ SK + +G E + + Q+
Sbjct: 219 KRKVCFERSEQALRQ--LSKGRLPGPTPTAAEPEVTEADGAPEQDGCDAQQASHGPQQAP 276
Query: 235 KSGPV------LDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
SGP+ D D D GKLYL+PLTT GNLPFRR+CK++GAD+TC
Sbjct: 277 PSGPLRTCGPLTDEDVVRLRPCEKRRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCG 336
Query: 289 EMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL 348
EMAV T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+
Sbjct: 337 EMAVCTNLLQGQTSEWALLKRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 396
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
GCPI+ +YK+G G L+ R+ F + G N
Sbjct: 397 GCPIDLVYKKGGGCALMNRSAKFQQIVRGMN 427
Score = 401 (146.2 bits), Expect = 3.3e-35, P = 3.3e-35
Identities = 82/180 (45%), Positives = 112/180 (62%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 314 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQTSEWALLKRHPCEDVFGVQLEGAF 372
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MN+V +
Sbjct: 373 PDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGMNQVLDV 432
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW YIE+C S
Sbjct: 433 PLTVKIRTGVQERVNLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWQYIEQCVTAAS 492
Score = 349 (127.9 bits), Expect = 1.3e-90, Sum P(2) = 1.3e-90
Identities = 60/99 (60%), Positives = 78/99 (78%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +P+ RDWGA+L+TLHGR+REQRYTK ADW YIE+C SP PL+GNGDILSYE
Sbjct: 447 NLAHRLLPELRDWGAALVTLHGRSREQRYTKLADWQYIEQCVTAASPMPLFGNGDILSYE 506
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D ++K ++G+MI RGAL+KPW+F EIKE++ +DI
Sbjct: 507 DANRAMKTG--VAGIMIARGALLKPWLFTEIKEQRHWDI 543
>UNIPROTKB|E1BGZ1 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 EMBL:DAAA02019576
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
OMA:MSEWALL GeneTree:ENSGT00550000075134 IPI:IPI00715519
RefSeq:NP_001193247.1 UniGene:Bt.15641 ProteinModelPortal:E1BGZ1
Ensembl:ENSBTAT00000015715 GeneID:508812 KEGG:bta:508812
NextBio:20868690 Uniprot:E1BGZ1
Length = 650
Score = 572 (206.4 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 142/401 (35%), Positives = 204/401 (50%)
Query: 1 MDASGVAKIKQEFIVEDHVKVLSIECVNETDKR-KLEELEVEDDGTAXXXXX-----XXX 54
++A G K QE + V + KR +LE+ + ED G A
Sbjct: 45 LEAKGQEKPSQE---SEAVDPAGNDLAEPEAKRIRLEDGQTED-GQAEEAAEPGEQLQAQ 100
Query: 55 XXXXGQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPED 111
GQNK R PT K + CP L + + C YG++C+F+HD ++++KP D
Sbjct: 101 KRARGQNKCRPHVKPTHYDKNK--LCPSLVQESAAR-CFYGDRCRFLHDVGHYLETKPAD 157
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVR 171
+ C +F G CP G+ CRF +HL G N+V+E +++ N L ++
Sbjct: 158 LGPSCVLFETFGRCPYGVTCRFAGAHLGPEGQNLVREGLVQ------APPVRNGLDKALQ 211
Query: 172 QDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTD--DVIK 229
Q LRK +F+++E+ ++ S+ ++ V EGRE P D D+
Sbjct: 212 QQLRKRKIHFKRAEQALRQ--LSRGPLPGP-----TPEATVPEGREAEGAPGQDNCDIQL 264
Query: 230 VQEETKS-----------GPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLC 278
+E + GP+ D D D GKLYL+PLTT GNLPFRR+C
Sbjct: 265 APQEPDTVGPPSGPLRTCGPLTDEDVVRLRPHEKRRLDISGKLYLAPLTTCGNLPFRRIC 324
Query: 279 KKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQ 338
K++GAD+TC EMAV T LL+ EWAL+KRH ED+FGVQL G P +TKC +LL
Sbjct: 325 KRFGADVTCGEMAVCTNLLQGQTSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRT 384
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
+ VDFVD+N+GCPI+ ++K+G G L+ R F + G N
Sbjct: 385 IEVDFVDINVGCPIDLVFKKGGGCALMNRLAKFQQIVRGMN 425
Score = 392 (143.0 bits), Expect = 4.1e-34, P = 4.1e-34
Identities = 80/175 (45%), Positives = 109/175 (62%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 312 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQTSEWALLKRHPCEDIFGVQLEGAF 370
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ ++K+G G L+ R Q ++ MN+V +
Sbjct: 371 PDTMTKCAELLNRTIEVDFVDINVGCPIDLVFKKGGGCALMNRLAKFQQIVRGMNQVLDV 430
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
P+TVK RTG+ + N+ H +P RDWGA+L+TLHGR+REQRYTK ADW YIE+C
Sbjct: 431 PLTVKLRTGVQERVNLAHRLLPDLRDWGAALVTLHGRSREQRYTKLADWQYIEQC 485
Score = 340 (124.7 bits), Expect = 1.9e-89, Sum P(2) = 1.9e-89
Identities = 59/99 (59%), Positives = 76/99 (76%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +P RDWGA+L+TLHGR+REQRYTK ADW YIE+C P PL+GNGD+LSYE
Sbjct: 445 NLAHRLLPDLRDWGAALVTLHGRSREQRYTKLADWQYIEQCVAAARPMPLFGNGDVLSYE 504
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +L+ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 505 DANRALQTG--VAGVMIARGALLKPWLFTEIKEQRHWDI 541
>UNIPROTKB|F1PS34 [details] [associations]
symbol:LOC100856098 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0008270 GO:GO:0003676
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AAEX03012510
RefSeq:XP_003639789.1 Ensembl:ENSCAFT00000029778 GeneID:100856098
KEGG:cfa:100856098 Uniprot:F1PS34
Length = 645
Score = 565 (203.9 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 122/331 (36%), Positives = 180/331 (54%)
Query: 59 GQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
GQNK R PT K CP L + + C +G++C+F+HD ++++KP D+ +
Sbjct: 100 GQNKGRPHMKPTHYDKNR--LCPSLVQESAAK-CFFGDRCRFLHDVGRYLETKPSDLGPR 156
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
C +F G CP G+ CRF +HL G N+V+E+ ++ N L ++Q LR
Sbjct: 157 CVLFETFGRCPYGVTCRFAGAHLGPEGQNLVREERVQ------APPVRNGLDRALQQQLR 210
Query: 176 KHTYNFEKSEKICKENKASKNENKD----TDDCCKNQDSKVIEG---REEINTPNTDDVI 228
K FE++E+ ++ T + + + +G ++ + P +
Sbjct: 211 KRQVRFERAEQALRQLSRGPGTGPSPAAATPEVSGTEGAPGQDGGDTQQALLEPGAGALA 270
Query: 229 KVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCS 288
+T GP+ D D D GKLYL+PLTT GNLPFRR+CK++GAD+TC
Sbjct: 271 SSSVQT-CGPLTDEDIVRLRPCEKRKLDIGGKLYLAPLTTCGNLPFRRICKRFGADVTCG 329
Query: 289 EMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNL 348
EMAV T LL+ EWAL++RH ED+FGVQL G P +TKC +LL + VDFVD+N+
Sbjct: 330 EMAVCTNLLQGQTSEWALLRRHPCEDVFGVQLEGAFPDTMTKCAELLNRTIEVDFVDINV 389
Query: 349 GCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
GCPI+ +YK+G G L+ R+ F + G N
Sbjct: 390 GCPIDLVYKKGGGCALMNRSAKFQQIVRGMN 420
Score = 397 (144.8 bits), Expect = 9.6e-35, P = 9.6e-35
Identities = 81/180 (45%), Positives = 112/180 (62%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 307 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQTSEWALLRRHPCEDVFGVQLEGAF 365
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MN+V +
Sbjct: 366 PDTMTKCAELLNRTIEVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGMNQVLDV 425
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + N+ H +P+ R+WGA+L+TLHGR+REQRYTK ADW YIE+C S
Sbjct: 426 PLTVKIRTGVQERVNLAHRLLPELREWGAALVTLHGRSREQRYTKLADWQYIEQCVTAAS 485
Score = 342 (125.4 bits), Expect = 6.3e-89, Sum P(2) = 6.3e-89
Identities = 59/99 (59%), Positives = 78/99 (78%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +P+ R+WGA+L+TLHGR+REQRYTK ADW YIE+C SP PL+GNGDILSYE
Sbjct: 440 NLAHRLLPELREWGAALVTLHGRSREQRYTKLADWQYIEQCVTAASPMPLFGNGDILSYE 499
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++GVMI RGAL+KPW+F EIKE++ +DI
Sbjct: 500 DANRAMQTG--VAGVMIARGALLKPWLFTEIKEQRHWDI 536
>MGI|MGI:2147092 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
MGI:MGI:2147092 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 CTD:56931
HOGENOM:HOG000240610 HOVERGEN:HBG062413 OrthoDB:EOG4K6G43
EMBL:AY040840 EMBL:AK157702 EMBL:BC052481 IPI:IPI00129184
IPI:IPI00776080 RefSeq:NP_659107.2 UniGene:Mm.293973
ProteinModelPortal:Q91XI1 SMR:Q91XI1 STRING:Q91XI1
PhosphoSite:Q91XI1 PaxDb:Q91XI1 PRIDE:Q91XI1
Ensembl:ENSMUST00000007747 GeneID:224907 KEGG:mmu:224907
UCSC:uc008ddd.2 GeneTree:ENSGT00550000075134 InParanoid:Q91XI1
NextBio:377458 Bgee:Q91XI1 CleanEx:MM_DUS3L Genevestigator:Q91XI1
GermOnline:ENSMUSG00000007603 Uniprot:Q91XI1
Length = 637
Score = 570 (205.7 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 121/317 (38%), Positives = 172/317 (54%)
Query: 59 GQNKARG---PTFVTKPEDCYCP-FLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISE 114
GQNK+R P K D CP FL++ C +G++C+F+HD ++++KP D+
Sbjct: 94 GQNKSRPHVKPAHYDK--DRLCPSFLQEPATP--CAFGDRCRFLHDVGRYLETKPADLGP 149
Query: 115 QCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDL 174
+C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q L
Sbjct: 150 RCVLFETFGRCPFSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQL 207
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEET 234
RK FE++E+ S + K +++T +
Sbjct: 208 RKRQVCFERAEQALNRLTQSPMPTVVPETTVAMATPKQNSCHAQLDTVGGAGTPQSSPVP 267
Query: 235 KSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT 294
GP+ D D D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMAV T
Sbjct: 268 TCGPLTDEDVIRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAVCT 327
Query: 295 ELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEF 354
LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+
Sbjct: 328 NLLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDL 387
Query: 355 IYKQGSGSGLLQRANLF 371
+YK+G G L+ R+ F
Sbjct: 388 VYKKGGGCALMNRSAKF 404
Score = 387 (141.3 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 79/180 (43%), Positives = 113/180 (62%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 299 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQMSEWALLKRHPCEDIFGVQLEGAF 357
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ +N V +
Sbjct: 358 PDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGVNGVLDV 417
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + ++ H +P+ RDWG +L+TLHGR+REQRYT+ ADW YIE+CA++ S
Sbjct: 418 PLTVKMRTGVQERVSLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVAS 477
Score = 331 (121.6 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 55/99 (55%), Positives = 80/99 (80%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
++ H +P+ RDWG +L+TLHGR+REQRYT+ ADW YIE+CA++ SP PL+GNGDILS+E
Sbjct: 432 SLAHRLLPELRDWGVALVTLHGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFE 491
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++G+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 492 DANCAMQTG--VAGIMVARGALLKPWLFTEIKEQRHWDI 528
>RGD|1563228 [details] [associations]
symbol:Dus3l "dihydrouridine synthase 3-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
RGD:1563228 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 CTD:56931 HOVERGEN:HBG062413
EMBL:BC105780 IPI:IPI00373725 RefSeq:NP_001030095.1
UniGene:Rn.42187 ProteinModelPortal:Q3KRC5 PhosphoSite:Q3KRC5
PRIDE:Q3KRC5 GeneID:301122 KEGG:rno:301122 NextBio:648195
Genevestigator:Q3KRC5 Uniprot:Q3KRC5
Length = 640
Score = 560 (202.2 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 119/324 (36%), Positives = 170/324 (52%)
Query: 59 GQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
GQNK+R P K CP L + C +G++C+F+HD ++++KP D+
Sbjct: 97 GQNKSRPHMKPAHYDKER--LCPSLLQESATP-CAFGDRCRFLHDVGRYLETKPADLGPH 153
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLR 175
C +F G CP + CRF +HL G N+V+E+V+ + N L ++Q LR
Sbjct: 154 CVLFNTFGRCPYSMTCRFAGAHLGPEGQNLVQEEVVARCAQLPSVR--NGLDRALQQQLR 211
Query: 176 KHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETK 235
K FE++E+ + K +++ D +
Sbjct: 212 KRQVCFERAEQALSHLTQGPMPTIAPESTVATLTPKHSSCHVQLDNVGGDGARQGSPVPT 271
Query: 236 SGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATE 295
GP+ D D D GKLYL+PLTT GNLPFRR+CK++GAD+TC EMA+ T
Sbjct: 272 CGPLTDEDVVRLRPCEKKRLDISGKLYLAPLTTCGNLPFRRICKRFGADVTCGEMAMCTN 331
Query: 296 LLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFI 355
LL+ EWAL+KRH ED+FGVQL G P +TKC +LL + VDFVD+N+GCPI+ +
Sbjct: 332 LLQGQMSEWALLKRHPCEDIFGVQLEGAFPDTMTKCAELLNRTIDVDFVDINVGCPIDLV 391
Query: 356 YKQGSGSGLLQRANLFGVQLCGNN 379
YK+G G L+ R+ F + G N
Sbjct: 392 YKKGGGCALMNRSAKFQQIVRGMN 415
Score = 393 (143.4 bits), Expect = 2.9e-34, P = 2.9e-34
Identities = 80/180 (44%), Positives = 114/180 (63%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 302 LTTCGNLPFRRICKRFGADVTCGEMAMCT-NLLQGQMSEWALLKRHPCEDIFGVQLEGAF 360
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MNEV +
Sbjct: 361 PDTMTKCAELLNRTIDVDFVDINVGCPIDLVYKKGGGCALMNRSAKFQQIVRGMNEVLDV 420
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + ++ H +P+ R+WG +L+TLHGR+REQRYT+ ADW YIE+CA++ S
Sbjct: 421 PLTVKMRTGVQERVSLAHRLLPELRNWGVALVTLHGRSREQRYTRLADWPYIEQCAKVAS 480
Score = 326 (119.8 bits), Expect = 1.0e-86, Sum P(2) = 1.0e-86
Identities = 54/99 (54%), Positives = 80/99 (80%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
++ H +P+ R+WG +L+TLHGR+REQRYT+ ADW YIE+CA++ SP PL+GNGDILS+E
Sbjct: 435 SLAHRLLPELRNWGVALVTLHGRSREQRYTRLADWPYIEQCAKVASPMPLFGNGDILSFE 494
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D +++ ++G+M+ RGAL+KPW+F EIKE++ +DI
Sbjct: 495 DANCAMQTG--VAGIMVARGALLKPWLFTEIKEQRHWDI 531
>UNIPROTKB|F1NGP4 [details] [associations]
symbol:DUS3L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:MSEWALL
GeneTree:ENSGT00550000075134 EMBL:AADN02072212 IPI:IPI00581852
Ensembl:ENSGALT00000002780 Uniprot:F1NGP4
Length = 630
Score = 417 (151.9 bits), Expect = 6.4e-72, Sum P(2) = 6.4e-72
Identities = 92/226 (40%), Positives = 130/226 (57%)
Query: 155 KNTVGNKTV-NMLANEVRQDLRKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVI 213
K G V N L+ +++ LRK + F+K+++ + + A + N ++
Sbjct: 195 KQWEGKSLVRNSLSKDLQHQLRKKEFTFKKADEYLR-SLAKPHHNDRRGGKAPGHSAEES 253
Query: 214 EGREEINTPNTDDVIKVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLP 273
EG P +T +G V D D + QGKLYL+PLTT GNLP
Sbjct: 254 EG----GCPT---------KT-AGTVTDEDIVKLRSCEKKKLEIQGKLYLAPLTTCGNLP 299
Query: 274 FRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQ 333
FRR+CK++GAD+TC EMAV T LL+ EWAL+KRH +ED+FGVQL G P +TKC +
Sbjct: 300 FRRICKRFGADVTCGEMAVCTNLLQGQSSEWALLKRHHTEDIFGVQLEGAFPDTMTKCAE 359
Query: 334 LLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
LL + + VDFVD+N+GCPI+ +YK+G G L+ R+N F + G N
Sbjct: 360 LLNQTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQIVRGMN 405
Score = 416 (151.5 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 82/180 (45%), Positives = 116/180 (64%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG----CPIEFIYKQGSGSGLLQR---ANLFGVQLCGNN 379
LT C L ++ F DV G C + Q S LL+R ++FGVQL G
Sbjct: 292 LTTCGNLPFRRICKRFGADVTCGEMAVCT-NLLQGQSSEWALLKRHHTEDIFGVQLEGAF 350
Query: 380 PYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSL 439
P +TKC +LL + + VDFVD+N+GCPI+ +YK+G G L+ R+N + ++ MN V +
Sbjct: 351 PDTMTKCAELLNQTIDVDFVDINVGCPIDLVYKKGGGCALMTRSNKFEQIVRGMNSVLDV 410
Query: 440 PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
P+TVK RTG+ + N+ H +PK R+WGAS++TLHGR+REQRYT+ ADWDYI +CA++ S
Sbjct: 411 PLTVKIRTGVQEKMNVAHKIIPKIREWGASMVTLHGRSREQRYTRVADWDYIAECAKIAS 470
Score = 359 (131.4 bits), Expect = 6.4e-72, Sum P(2) = 6.4e-72
Identities = 61/99 (61%), Positives = 82/99 (82%)
Query: 503 NIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYE 562
N+ H +PK R+WGAS++TLHGR+REQRYT+ ADWDYI +CA++ SP PL+GNGDILSYE
Sbjct: 425 NVAHKIIPKIREWGASMVTLHGRSREQRYTRVADWDYIAECAKIASPMPLFGNGDILSYE 484
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
D ++++ +SG+MI RGALIKPW+F EIKE++ +DI
Sbjct: 485 DANQAMQTG--VSGIMIARGALIKPWLFTEIKEQRHWDI 521
Score = 232 (86.7 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 52/180 (28%), Positives = 90/180 (50%)
Query: 59 GQNKARG---PTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQ 115
GQNK+R P K CP + E+ C +G +C+F+HD +M +KP D+
Sbjct: 102 GQNKSRPCMKPNHYEKSR--LCPSVTQGC-EEKCYFGPRCRFLHDVGEYMAAKPPDLGHS 158
Query: 116 CYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTV-NMLANEVRQDL 174
C +F G CP G+ CRF +HL + N+V ++ K+W+ G V N L+ +++ L
Sbjct: 159 CVLFETFGKCPYGVTCRFAKAHLGDGHQNVVNTELAKQWE---GKSLVRNSLSKDLQHQL 215
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNT---DDVIKVQ 231
RK + F+K+++ + + A + N ++ EG T T +D++K++
Sbjct: 216 RKKEFTFKKADEYLR-SLAKPHHNDRRGGKAPGHSAEESEGGCPTKTAGTVTDEDIVKLR 274
>WB|WBGene00021377 [details] [associations]
symbol:Y37E11B.5 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0008270 GO:GO:0003676 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OMA:MSEWALL GeneTree:ENSGT00550000075134
EMBL:FO080119 PIR:T33894 RefSeq:NP_500379.1
ProteinModelPortal:Q9TYN2 SMR:Q9TYN2 STRING:Q9TYN2 PaxDb:Q9TYN2
EnsemblMetazoa:Y37E11B.5.1 EnsemblMetazoa:Y37E11B.5.2 GeneID:177120
KEGG:cel:CELE_Y37E11B.5 UCSC:Y37E11B.5 CTD:177120
WormBase:Y37E11B.5 InParanoid:Q9TYN2 NextBio:895428 Uniprot:Q9TYN2
Length = 554
Score = 321 (118.1 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 60/116 (51%), Positives = 81/116 (69%)
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
GK YL+PLTTVGNLPFRR+C +GADITC EMA+AT +L + E++L+KRH E +FGV
Sbjct: 204 GKKYLAPLTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKIFGV 263
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN-LFGV 373
QL G + K +Q++ E VDF+D+N+GCPI+ + ++G G L R LF V
Sbjct: 264 QLAGGFADTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEV 319
Score = 246 (91.7 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 48/92 (52%), Positives = 64/92 (69%)
Query: 511 KFRDWGA-SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLK 569
K W LIT H R++EQRYT+ A+WD+ + P PL+ GDILS+EDY E L+
Sbjct: 356 KKHSWHTPDLITFHPRSKEQRYTRLANWDFTFPVQEATKPVPLWVCGDILSWEDYYERLE 415
Query: 570 KSPSISGVMIGRGALIKPWIFQEIKEKKLFDI 601
+ P ++G+MIGRGALIKPWIF EI E++ +DI
Sbjct: 416 QYP-VNGIMIGRGALIKPWIFTEIDERRTWDI 446
Score = 223 (83.6 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 59/175 (33%), Positives = 89/175 (50%)
Query: 328 LTKCTQLLEEQMAVDF-VDVNLG-CPIEFIYKQGSGS--GLLQR---ANLFGVQLCGNNP 380
LT L ++ VD+ D+ G + G+ S LL+R +FGVQL G
Sbjct: 211 LTTVGNLPFRRICVDYGADITCGEMALATSILSGTASEYSLLKRHPCEKIFGVQLAGGFA 270
Query: 381 YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV--SS 438
+ K +Q++ E VDF+D+N+GCPI+ + ++G G L R L V+ V
Sbjct: 271 DTMAKASQIVVENFDVDFIDINMGCPIDVVNQKGGGCALPSRPQKLFEVLAATKSVLGGC 330
Query: 439 LPITVKTRTGIHKDNNIIHNFMP--KFRDWGA-SLITLHGRTREQRYTKQADWDY 490
P+TVK RTG+ + ++ K W LIT H R++EQRYT+ A+WD+
Sbjct: 331 CPLTVKIRTGMKEGVLKAPEYVEHMKKHSWHTPDLITFHPRSKEQRYTRLANWDF 385
Score = 198 (74.8 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 45/110 (40%), Positives = 60/110 (54%)
Query: 89 CKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKE 148
CK+GEKC HD + F+ KP DI C ++ G CP ACRFG +HLDE G K
Sbjct: 76 CKFGEKCNCEHDISAFLAKKPADIGVACPLYDARGACPFSYACRFGGAHLDEAGQQSEKS 135
Query: 149 DVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNEN 198
K ++ T N + +++ LRK Y+FEK+EK + A KNEN
Sbjct: 136 PE-KPYE-----PTTNCHSMKIQVALRKREYDFEKTEKALE---AIKNEN 176
Score = 37 (18.1 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 292 VATELLKSSPQEWALIKRHES 312
++T LL +P+ + I +H++
Sbjct: 531 ISTRLLGPTPEGFQFIPKHKA 551
>SGD|S000004393 [details] [associations]
symbol:DUS3 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS;IMP] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0002943 "tRNA dihydrouridine synthesis" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016491 "oxidoreductase activity"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 SGD:S000004393 GO:GO:0005634 GO:GO:0005737
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:BK006945 EMBL:U19729 EMBL:Z18944 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
GeneTree:ENSGT00550000075134 OrthoDB:EOG4M950K OMA:PWIFEEV
PIR:S55957 RefSeq:NP_013505.4 RefSeq:NP_013508.3
ProteinModelPortal:Q06053 SMR:Q06053 DIP:DIP-4469N MINT:MINT-473573
STRING:Q06053 PaxDb:Q06053 PeptideAtlas:Q06053 EnsemblFungi:YLR401C
GeneID:851117 GeneID:851120 KEGG:sce:YLR401C KEGG:sce:YLR404W
BioCyc:MetaCyc:MONOMER-16678 NextBio:967836 Genevestigator:Q06053
GermOnline:YLR401C Uniprot:Q06053
Length = 668
Score = 429 (156.1 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 127/385 (32%), Positives = 189/385 (49%)
Query: 3 ASGVAKIKQEFIVEDHVKVLSIECVNETDKR-KLEELEVEDDGTAXXXXXXXXXXXXGQN 61
+ G+A IK E+IV +K + V D+ + + E G GQN
Sbjct: 26 SKGIAHIKPEYIVP--LKQNENQKVAIYDEEMSSDRMTNEFAGGTNKKNKNGRGKKRGQN 83
Query: 62 KARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSK-PE---DISEQCY 117
K R V K ++ CP L + + C +G+ C+FVHD N+++ +K PE +I C
Sbjct: 84 KNRDNRQV-KEQNVLCPRLIHGDISK-CSFGDNCRFVHDINLYLSTKKPEVESNIFPSCP 141
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKT--VNMLANEVRQDLR 175
VF G+CPMG CRF SSHL++ ++ + + T+ + VN ++ E + DL
Sbjct: 142 VFNSLGFCPMGFKCRFLSSHLNKEDNILISKKEIDPDAQTIWSVKGEVNHISPERKLDLI 201
Query: 176 KHTYNFEKSEKI----------CKENKASKNENKDTDDCCKNQDSKVIEGREEINTPNTD 225
K + F KS +I C+++ + E + T K QD V E+ P +
Sbjct: 202 KRRFPFTKSNEILEIIDSFQQECRDSMKPEEEVESTPQL-KKQDPDV----EQPVAPQVE 256
Query: 226 DVIKVQEE--TKSGPV-LDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWG 282
K E K V L D K +SPLTTVGNLP+RRL +K G
Sbjct: 257 QRNKELSEHRMKQREVYLKYKDTRYFAQEKKPLDLYHKKIVSPLTTVGNLPYRRLMRKLG 316
Query: 283 ADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQMA- 340
AD+T SEMA+A L++ + EWAL K H SE FGVQ+ + + K + L ++
Sbjct: 317 ADVTYSEMALAVPLIQGTNSEWALPKAHTSEFPGFGVQVACSKAWQAAKAAEALANSVSE 376
Query: 341 VDFVDVNLGCPIEFIYKQGSGSGLL 365
+ +++N GCPI+ +Y+QGSGS LL
Sbjct: 377 ISEINLNSGCPIDLLYRQGSGSALL 401
Score = 241 (89.9 bits), Expect = 9.5e-26, Sum P(2) = 9.5e-26
Identities = 50/128 (39%), Positives = 75/128 (58%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FGVQ+ + + K + L + + +++N GCPI+ +Y+QGSGS LL +
Sbjct: 351 FGVQVACSKAWQAAKAAEALANSVSEISEINLNSGCPIDLLYRQGSGSALLDNPARMIRC 410
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKF-RDWGASLITLHGRTREQRYTKQAD 487
+ MN VS +PITVK RTG + + I + + + + ITLHGR+R+QRYTK AD
Sbjct: 411 LNAMNYVSKDIPITVKIRTGTKEGHPIAEGLVKRLVNETDVAAITLHGRSRQQRYTKSAD 470
Query: 488 WDYIEKCA 495
WDY+ + A
Sbjct: 471 WDYVSQVA 478
Score = 130 (50.8 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD+ ++ED+ L + +I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 508 GNGDVNNFEDWYRYLNGNENIDSVMVARGALIKPWIFEEVESQQYLD 554
Score = 108 (43.1 bits), Expect = 4.5e-59, Sum P(3) = 4.5e-59
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 520 ITLHGRTREQRYTKQADWDYIEKCA 544
ITLHGR+R+QRYTK ADWDY+ + A
Sbjct: 454 ITLHGRSRQQRYTKSADWDYVSQVA 478
>DICTYBASE|DDB_G0292686 [details] [associations]
symbol:dus3l "tRNA-dihydrouridine synthase 3-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA;ISS] [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
SMART:SM00356 dictyBase:DDB_G0292686 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000194 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:XP_629571.1
ProteinModelPortal:Q54CU9 STRING:Q54CU9 EnsemblProtists:DDB0238072
GeneID:8628832 KEGG:ddi:DDB_G0292686 KO:K05544 OMA:WGASAIT
ProtClustDB:CLSZ2495295 Uniprot:Q54CU9
Length = 671
Score = 348 (127.6 bits), Expect = 7.8e-55, Sum P(2) = 7.8e-55
Identities = 92/289 (31%), Positives = 147/289 (50%)
Query: 89 CKYGEKCKFVHDKNVFMKS---KPE------DISEQCYVFLQHGYCPMGIACRFGSSHLD 139
C +GE C V +K + K K E ++S + + L+ P + + +
Sbjct: 155 CYFGE-CHIVDNKTIVNKELIGKVEPVKTLNEVSNEIQIQLKTNNYPFPKS----EIYFN 209
Query: 140 ENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKNENK 199
ENG ++ + +K +N NK N + R++ K + + ++KI EN+ +
Sbjct: 210 ENGISVRQ---IKG-RNNNNNKNNNKQNDNKRKENEKDDDDDKLNKKIKLENENTTTTTT 265
Query: 200 DTDDCCKNQDSKVIEGREEINTPNTDDVIKVQEETKSGPVLDTDXXX-XXXXXXXXXDWQ 258
T K E E+ T + K +E +S + D +++
Sbjct: 266 TTTTTTTETTEKT-EKTEKTEKTETTET-KKEEFKQSNENTEIDIMTPLKANEKKRINFE 323
Query: 259 GKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGV 318
+L L+PLTTVGNLPFRR+CK+ GADIT EMA+ T+LL+ + E AL+KRH ED FGV
Sbjct: 324 NQLILAPLTTVGNLPFRRICKRLGADITIGEMALTTKLLEGTKSELALLKRHPCEDKFGV 383
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR 367
Q+CG+ KC + +E ++ DFVD+N GCPI+ + G+G+ L++R
Sbjct: 384 QICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMER 432
Score = 304 (112.1 bits), Expect = 6.6e-39, Sum P(2) = 6.6e-39
Identities = 53/154 (34%), Positives = 93/154 (60%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
FGVQ+CG+ KC + +E ++ DFVD+N GCPI+ + G+G+ L++R ++ ++
Sbjct: 381 FGVQICGSYVDAAVKCAEFIENEIDADFVDINSGCPIDLVCNMGAGAALMERPKKVEQLL 440
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
++ S P T+K R G +D H +P +WGA +TLHGR+R QRY++ A+WDY
Sbjct: 441 RGISSSLSCPTTIKIRIGKSEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANWDY 500
Query: 491 IEKCAQLCSRD---NNIIHNFMPKFRDWGASLIT 521
+++C+++ S N I+N+ + +S ++
Sbjct: 501 VKQCSEVSSIPLIGNGDIYNYQDVVNIYDSSKVS 534
Score = 289 (106.8 bits), Expect = 7.8e-55, Sum P(2) = 7.8e-55
Identities = 53/105 (50%), Positives = 74/105 (70%)
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
S D H +P +WGA +TLHGR+R QRY++ A+WDY+++C+++ S PL GNGDI
Sbjct: 460 SEDAPTAHKLIPSLGEWGACAVTLHGRSRAQRYSRLANWDYVKQCSEVSS-IPLIGNGDI 518
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYA 603
+Y+D ++ S +S +MI RGALIKPWIF EIKEK+ +DI A
Sbjct: 519 YNYQDVV-NIYDSSKVSSIMIARGALIKPWIFTEIKEKREWDISA 562
Score = 187 (70.9 bits), Expect = 6.6e-39, Sum P(2) = 6.6e-39
Identities = 45/153 (29%), Positives = 78/153 (50%)
Query: 74 DCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRF 133
D CP + + C++ E CKF HD ++ SKP+ I C F +G C G+ C F
Sbjct: 102 DKLCPKISKGLV---CEFNETCKFSHDVEKYLASKPKSIGI-CQNFQTYGECKYGLNCYF 157
Query: 134 GSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKA 193
G H+ +N IV ++++ + + KT+N ++NE++ L+ + Y F KSE EN
Sbjct: 158 GECHIVDNK-TIVNKELIGKVEPV---KTLNEVSNEIQIQLKTNNYPFPKSEIYFNENGI 213
Query: 194 SKNENKDTDDCCKNQDSKVIEGREEINTPNTDD 226
S + K ++ ++K + + + N + DD
Sbjct: 214 SVRQIKGRNNNNNKNNNKQNDNKRKENEKDDDD 246
>POMBASE|SPAC16.04 [details] [associations]
symbol:dus3 "tRNA dihydrouridine synthase Dus3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=ISO] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 PomBase:SPAC16.04 GO:GO:0005634 GO:GO:0005737
EMBL:CU329670 GenomeReviews:CU329670_GR Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05544
HOGENOM:HOG000240610 OrthoDB:EOG4M950K PIR:T37732
RefSeq:NP_594572.1 ProteinModelPortal:Q9UTH9 STRING:Q9UTH9
EnsemblFungi:SPAC16.04.1 GeneID:2541573 KEGG:spo:SPAC16.04
OMA:PWIFEEV NextBio:20802667 Uniprot:Q9UTH9
Length = 617
Score = 410 (149.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 111/336 (33%), Positives = 169/336 (50%)
Query: 59 GQNKARGPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDISEQCYV 118
GQNK R V K + CP + ++ C Y E CKF HD ++ +K DI ++C +
Sbjct: 31 GQNKRREKIHV-KENNALCPAI---SIGNECPYKENCKFPHDVEAYLATKAPDIGDKCPI 86
Query: 119 FLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEWKNTVGNKTVNMLANEVRQDLRKHT 178
F ++G CP G CR+ + H+ N K +++K+ TVN + EV++ LR
Sbjct: 87 FERYGVCPAGFKCRWLAGHVVINADG--KYELIKKPDGQFTLFTVNTVGKEVQRKLRTKQ 144
Query: 179 YNFEKSEKIC-------KENKASK-----NENKDTDDCC---KNQDSKVIE--GREEINT 221
+ K+E I K + +SK EN+D K +S +E G + T
Sbjct: 145 LDLSKAESIISAVLGEEKPDPSSKVSNIPEENRDATSAISEGKETESVSLEETGVLKNQT 204
Query: 222 PNTD-DVIKVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKK 280
+ + D+ ++ + +S L T DW+ + L+PLTTVGN PFRRLC
Sbjct: 205 VSVNVDLKEISSQARSNIALPT----LRPQEKNLIDWRDRKILAPLTTVGNPPFRRLCGS 260
Query: 281 WGADITCSEMAVATELLKSSPQEWALIK--RHESE-------DLFGVQLCGNNPYVLTKC 331
GAD SEMA+ L++ EWAL++ +E E + GVQL + TK
Sbjct: 261 LGADTFYSEMAMCYPLMQGHQPEWALVRGLNYEREMMRGGRRGILGVQLATGKLWQATKT 320
Query: 332 TQLLEEQM-AVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
Q++ EQ VDF+D+N GCPI+ +++QG+GS LL+
Sbjct: 321 AQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLE 356
Score = 265 (98.3 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 55/132 (41%), Positives = 82/132 (62%)
Query: 367 RANLFGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
R + GVQL + TK Q++ EQ VDF+D+N GCPI+ +++QG+GS LL+
Sbjct: 301 RRGILGVQLATGKLWQATKTAQVIAEQCDGVDFLDLNCGCPIDLVFRQGAGSSLLENPGR 360
Query: 426 LQSVITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPK-FRDWGASLITLHGRTREQRYT 483
L + M+ VS +P+TVK R G D+ ++ N + + F + S TLHGR+R+QRY+
Sbjct: 361 LLRNLQGMDAVSGQIPVTVKLRMGNKDDHPVVKNLIGRIFNETNTSAATLHGRSRQQRYS 420
Query: 484 KQADWDYIEKCA 495
K A+WDYI + A
Sbjct: 421 KNANWDYIGEIA 432
Score = 148 (57.2 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 40/116 (34%), Positives = 61/116 (52%)
Query: 501 DNNIIHNFMPK-FRDWGASLITLHGRTREQRYTKQADWDYI-----------EKCAQLCS 548
D+ ++ N + + F + S TLHGR+R+QRY+K A+WDYI E+ +L
Sbjct: 388 DHPVVKNLIGRIFNETNTSAATLHGRSRQQRYSKNANWDYIGEIASKVKSMNERIDELPE 447
Query: 549 PA----PLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ PL G+ Y + + VMI RGAL+KPWIF+EI+ ++ D
Sbjct: 448 DSLRTQPLSLIGNGDCYSWQDWYDGVNKGVDTVMIARGALVKPWIFEEIEARQFID 503
>ASPGD|ASPL0000051905 [details] [associations]
symbol:AN0818 species:162425 "Emericella nidulans"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50103 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
EMBL:BN001308 GO:GO:0050660 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 EMBL:AACD01000013 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05544 HOGENOM:HOG000240610
RefSeq:XP_658422.1 ProteinModelPortal:Q5BF62 STRING:Q5BF62
EnsemblFungi:CADANIAT00001842 GeneID:2876594 KEGG:ani:AN0818.2
OMA:GTTRRFL OrthoDB:EOG4M950K Uniprot:Q5BF62
Length = 714
Score = 241 (89.9 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 90/323 (27%), Positives = 133/323 (41%)
Query: 5 GVAKIKQEFIVEDHVKVLSIECVNETDKRKLEELEVEDDGTAXXXXXXXXXXXXGQNKAR 64
GVA IK EF++ + + V+ TD E +D GQNK R
Sbjct: 52 GVAPIKAEFLIPKPKQGQA--AVSSTDDAA-EAAAYKD---REDEKKGKKKKTTGQNKNR 105
Query: 65 GPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS-KPEDISE---QCY 117
TF + C C +G+KC+F HD ++K K ED++ C
Sbjct: 106 --TFGRSQDSKGLCASRVYSPEFSPAECPFGDKCRFEHDLRTYLKEHKREDLNTFNGVCP 163
Query: 118 VFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKEW---KNTVGNKTVNMLANEVRQDL 174
V+ G C G CRF SH E V ED KE ++ K + +D
Sbjct: 164 VWSARGKCDAGWKCRFVGSHSIER----VTEDGRKELVLVEDEERRKKAQPVFPSAAEDG 219
Query: 175 RKHTYNFEKSEKICKENKASKNENKDTD--DCCKNQDSKVIEGREEINTPNTDDVIKVQE 232
+T + + K + + + +D D + K G ++ N D + +E
Sbjct: 220 TVNTTSPADKIALAKRQRPTPRADAYSDWLDLTSKELEKYFHGGQQ-NKDAHPDTAQDKE 278
Query: 233 ETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAV 292
E + T+ L+PLTT GNLPFRRLC + GA +T SEMA+
Sbjct: 279 EKEENRATYTEAPFMPSEKRRLYFGPETPALAPLTTQGNLPFRRLCVELGAQLTYSEMAL 338
Query: 293 ATELLKSSPQEWALIKRHESEDL 315
+ L++ EWAL++ HE+E L
Sbjct: 339 SMPLIQGHKPEWALMRAHETEAL 361
Score = 237 (88.5 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 57/147 (38%), Positives = 84/147 (57%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FG Q+ GN + K T++L + +D+N GCPI+ +Y++GSGS LL + L+ +
Sbjct: 383 FGAQIAGNKYRWVMKATEVLSSLTPNLRVIDLNCGCPIDLLYREGSGSALLDAPSKLEKM 442
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNN-----IIHNF--------MPKFRDWGASLITLHG 475
+ MN VS +PITVK RTG +DN ++ M G + ITLHG
Sbjct: 443 LRGMNAVSEQIPITVKIRTGT-RDNTPNAQKLVERLILGGHEASMLNCGPSGVAAITLHG 501
Query: 476 RTREQRYTKQADWDYIEKCAQLCSRDN 502
R+R+QRYT++A+W+YI + A L R N
Sbjct: 502 RSRQQRYTREANWEYISETAALIKRLN 528
Score = 128 (50.1 bits), Expect = 1.1e-45, Sum P(3) = 1.1e-45
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
GNGD S+ DY + +K + + VM+GRGALIKPW+F+EI+ + D
Sbjct: 556 GNGDCYSHVDYEDHIKNA-KVDSVMVGRGALIKPWLFEEIQAGQYLD 601
Score = 117 (46.2 bits), Expect = 2.5e-40, Sum P(4) = 2.5e-40
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 312 SEDL-FGVQLCGNNPYVLTKCTQLLEEQMA-VDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
S+D+ FG Q+ GN + K T++L + +D+N GCPI+ +Y++GSGS LL +
Sbjct: 378 SKDMKFGAQIAGNKYRWVMKATEVLSSLTPNLRVIDLNCGCPIDLLYREGSGSALLDAPS 437
Query: 370 LFGVQLCGNN 379
L G N
Sbjct: 438 KLEKMLRGMN 447
Score = 108 (43.1 bits), Expect = 2.5e-40, Sum P(4) = 2.5e-40
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQL 546
G + ITLHGR+R+QRYT++A+W+YI + A L
Sbjct: 493 GVAAITLHGRSRQQRYTREANWEYISETAAL 523
>UNIPROTKB|K7EQU9 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000591560 Uniprot:K7EQU9
Length = 171
Score = 343 (125.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 61/110 (55%), Positives = 80/110 (72%)
Query: 270 GNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLT 329
GNLPFRR+CK++GAD+TC EMAV T LL+ EWAL+KRH+ ED+FGVQL G P +T
Sbjct: 2 GNLPFRRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEGAFPDTMT 61
Query: 330 KCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNN 379
KC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ F + G N
Sbjct: 62 KCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMN 111
Score = 289 (106.8 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 59/158 (37%), Positives = 91/158 (57%)
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQR---ANLFGVQLCG 377
CGN P+ + + ++ D + + Q S LL+R ++FGVQL G
Sbjct: 1 CGNLPF------RRICKRFGADVTCGEMAVCTNLLQGQMSEWALLKRHQCEDIFGVQLEG 54
Query: 378 NNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVS 437
P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++ MN+V
Sbjct: 55 AFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVRGMNQVL 114
Query: 438 SLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHG 475
+P+TVK RTG+ + N+ H +P+ RDWG +L+T G
Sbjct: 115 DVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVTEMG 152
Score = 67 (28.6 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 503 NIIHNFMPKFRDWGASLITLHG 524
N+ H +P+ RDWG +L+T G
Sbjct: 131 NLAHRLLPELRDWGVALVTEMG 152
>UNIPROTKB|A4RLF4 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000571
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103 GO:GO:0005634
GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:CM001232 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05544
OrthoDB:EOG4M950K RefSeq:XP_003714097.1 ProteinModelPortal:A4RLF4
STRING:A4RLF4 EnsemblFungi:MGG_01205T0 GeneID:2679761
KEGG:mgr:MGG_01205 Uniprot:A4RLF4
Length = 739
Score = 340 (124.7 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 96/248 (38%), Positives = 131/248 (52%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+PLTT GNLPFRRLC GA T SEMA+A +++ EWAL+K HESE
Sbjct: 328 LAPLTTQGNLPFRRLCVDLGAQGTYSEMAMAKPIVQGQQSEWALMKAHESE--------- 378
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYV 382
T+ L E +A + PI +Y R FG Q+ ++ +
Sbjct: 379 ------TRPPTLSPETLASN-------SPIVKVYDNS-------RDLRFGAQISASSHPL 418
Query: 383 LTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSS-LP 440
K + L + + +D+N GCPI+ IYK G+GS LL++ N ++ +I MN VS +P
Sbjct: 419 AIKAAECLTTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERIIRGMNAVSGEVP 478
Query: 441 ITVKTRTGIHKDN-----NIIHNFM--PKFRDW----GASLITLHGRTREQRYTKQADWD 489
IT K R G+ +++ NI P FR+ G + ITLHGRTR+QRY K ADW
Sbjct: 479 ITCKLRIGVKENHPLAKKNIERAVFGSPDFRNQLGAPGCAAITLHGRTRQQRYKKPADWG 538
Query: 490 YIEKCAQL 497
YI +CA L
Sbjct: 539 YIAECAAL 546
Score = 220 (82.5 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 73/236 (30%), Positives = 113/236 (47%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FG Q+ ++ + K + L + + +D+N GCPI+ IYK G+GS LL++ N ++ +
Sbjct: 407 FGAQISASSHPLAIKAAECLTTFLPHLRLIDLNCGCPIDMIYKAGAGSALLEQHNKIERI 466
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
I MN VS +PIT K R G+ K+N H K + + G + Q
Sbjct: 467 IRGMNAVSGEVPITCKLRIGV-KEN---HPLAKKNIERA-----VFG---SPDFRNQLG- 513
Query: 489 DYIEKCAQLCSRDNNIIHNFMPKFRDWG--ASLITLHGRTREQRYTKQADWDYIEKCAQL 546
CA + + K DWG A L R++R + D + L
Sbjct: 514 --APGCAAITLHGRTRQQRYK-KPADWGYIAECAALIQSYRDKR-DELTDTVREPDASTL 569
Query: 547 CSPAPLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
+ ++ GNGD S+ DY +++ +S + VMIGRGALIKPW+F+EI + D
Sbjct: 570 APSSEVFFLGNGDCYSHADYYKAIDES-HVDTVMIGRGALIKPWVFEEIAAGQYLD 624
Score = 114 (45.2 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 31/102 (30%), Positives = 47/102 (46%)
Query: 59 GQNKARGPTFVTKPED---CYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKS--KP--ED 111
GQN+AR F + C L D + C +G++C HD ++ +P E
Sbjct: 126 GQNQARD--FGRSADSIRLCNSRMLSDEFSPKHCSFGDRCNLSHDLRKYLAEGRRPDLET 183
Query: 112 ISEQCYVFLQHGYCPMGIACRFGSSHLDENGGNIVKEDVLKE 153
+C +F HG+C G C F SH++E + +ED KE
Sbjct: 184 FGGKCPIFEVHGWCNAGWKCLFVRSHMEE----VEREDGRKE 221
Score = 53 (23.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
Identities = 21/80 (26%), Positives = 36/80 (45%)
Query: 138 LDENGGNIVKEDVLK-EWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICKENKASKN 196
LDE+GG ++ +K + N G + + A+E++ D R K+E + + N
Sbjct: 38 LDEDGGENARDSAVKGDAAN--GQEHITPAASEIKPDNRVKGQAPIKAEYLVE---VIHN 92
Query: 197 ENKDTDDCCKNQDSKVIEGR 216
+D D + D EGR
Sbjct: 93 NGRDARD--EGPDDDAAEGR 110
>CGD|CAL0005565 [details] [associations]
symbol:orf19.1565 species:5476 "Candida albicans" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006400 "tRNA
modification" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 252 (93.8 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 51/124 (41%), Positives = 78/124 (62%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FGVQ+ + + K + + V +++N GCPI+ +YKQG GS LL + + L +
Sbjct: 303 FGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRI 362
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQAD 487
++ MN S +P+TVK RTGI + N N + + + G A+ ITLHGR+R+QRY+K+AD
Sbjct: 363 LSGMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEAD 422
Query: 488 WDYI 491
W+YI
Sbjct: 423 WNYI 426
Score = 245 (91.3 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 75/223 (33%), Positives = 112/223 (50%)
Query: 174 LRKHTYNFEKSEKICKENK--ASKNENKDTDDCCKNQDSKVIEGRE--EINTP------- 222
L+ H YN E S+ I +K +K N + + K+Q ++ + + +I+ P
Sbjct: 148 LKSH-YNPETSKLIKDGDKMETAKTTNYEVNHIDKDQKMEMQKKKYFFKISQPVIKYLDS 206
Query: 223 ---NTDDVIKVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCK 279
N ++ K +EE K + K+ +SPLTTVGNLP+RRL K
Sbjct: 207 RIQNEANLAKQKEERKDNEASYVEAPFTIAEKKKLHLRNAKI-VSPLTTVGNLPYRRLMK 265
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQ 338
GAD+T SEMA++ L++ EWAL K H SE FGVQ+ + + K + +
Sbjct: 266 TLGADVTYSEMALSVPLIQGHNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRN 325
Query: 339 MA-VDFVDVNLGCPIEFIYKQGSGSGLL-QRANLFGVQLCGNN 379
V +++N GCPI+ +YKQG GS LL Q + L + L G N
Sbjct: 326 TTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRI-LSGMN 367
Score = 196 (74.1 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 60/203 (29%), Positives = 98/203 (48%)
Query: 18 HVK-VLSIECVNETDKRKLEELEVEDDGTAXXXXXXXXXXXXGQNKARGPTF---VTKPE 73
HVK V +I+ L +E +DD A + K +G + + +
Sbjct: 26 HVKGVAAIKAEYLVPTSSLTVVEYDDD-EAEGGDREGESKPRNKKKQKGQNHKRDLKQKK 84
Query: 74 DCY--CPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA 130
D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF GYCP GI
Sbjct: 85 DIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFEALGYCPTGIK 144
Query: 131 CRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK 189
CR+ SH + ++K+ D ++ K T N VN + + + +++K Y F+ S+ + K
Sbjct: 145 CRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKYFFKISQPVIK 202
Query: 190 ------ENKAS----KNENKDTD 202
+N+A+ K E KD +
Sbjct: 203 YLDSRIQNEANLAKQKEERKDNE 225
Score = 195 (73.7 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 45/115 (39%), Positives = 68/115 (59%)
Query: 503 NIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQADWDYIEKCAQLCSP------------ 549
N N + + + G A+ ITLHGR+R+QRY+K+ADW+YI + +
Sbjct: 388 NTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGR 447
Query: 550 --APLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
P+Y GNGD+ S+ED+ E + + I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 448 DRDPVYFVGNGDVYSHEDWYEHVN-TDGIDSVMVARGALIKPWIFEEVEAQQYLD 501
>UNIPROTKB|Q5ALL3 [details] [associations]
symbol:DUS3 "tRNA-dihydrouridine(47) synthase [NAD(P)(+)]"
species:237561 "Candida albicans SC5314" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50103
CGD:CAL0005565 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0046872 GO:GO:0003700 EMBL:AACQ01000008
EMBL:AACQ01000007 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05544 RefSeq:XP_722466.1 RefSeq:XP_722607.1
ProteinModelPortal:Q5ALL3 STRING:Q5ALL3 GeneID:3635756
GeneID:3635912 KEGG:cal:CaO19.1565 KEGG:cal:CaO19.9138
Uniprot:Q5ALL3
Length = 613
Score = 252 (93.8 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 51/124 (41%), Positives = 78/124 (62%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMV-VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSV 429
FGVQ+ + + K + + V +++N GCPI+ +YKQG GS LL + + L +
Sbjct: 303 FGVQIASSKHWAAAKAAEAIYRNTTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRI 362
Query: 430 ITCMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQAD 487
++ MN S +P+TVK RTGI + N N + + + G A+ ITLHGR+R+QRY+K+AD
Sbjct: 363 LSGMNASSGDIPVTVKIRTGIKEGKNTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEAD 422
Query: 488 WDYI 491
W+YI
Sbjct: 423 WNYI 426
Score = 245 (91.3 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 75/223 (33%), Positives = 112/223 (50%)
Query: 174 LRKHTYNFEKSEKICKENK--ASKNENKDTDDCCKNQDSKVIEGRE--EINTP------- 222
L+ H YN E S+ I +K +K N + + K+Q ++ + + +I+ P
Sbjct: 148 LKSH-YNPETSKLIKDGDKMETAKTTNYEVNHIDKDQKMEMQKKKYFFKISQPVIKYLDS 206
Query: 223 ---NTDDVIKVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRRLCK 279
N ++ K +EE K + K+ +SPLTTVGNLP+RRL K
Sbjct: 207 RIQNEANLAKQKEERKDNEASYVEAPFTIAEKKKLHLRNAKI-VSPLTTVGNLPYRRLMK 265
Query: 280 KWGADITCSEMAVATELLKSSPQEWALIKRHESE-DLFGVQLCGNNPYVLTKCTQLLEEQ 338
GAD+T SEMA++ L++ EWAL K H SE FGVQ+ + + K + +
Sbjct: 266 TLGADVTYSEMALSVPLIQGHNPEWALPKAHVSEYPGFGVQIASSKHWAAAKAAEAIYRN 325
Query: 339 MA-VDFVDVNLGCPIEFIYKQGSGSGLL-QRANLFGVQLCGNN 379
V +++N GCPI+ +YKQG GS LL Q + L + L G N
Sbjct: 326 TTHVSELNLNCGCPIDLLYKQGQGSALLDQPSKLLRI-LSGMN 367
Score = 196 (74.1 bits), Expect = 4.7e-34, Sum P(2) = 4.7e-34
Identities = 60/203 (29%), Positives = 98/203 (48%)
Query: 18 HVK-VLSIECVNETDKRKLEELEVEDDGTAXXXXXXXXXXXXGQNKARGPTF---VTKPE 73
HVK V +I+ L +E +DD A + K +G + + +
Sbjct: 26 HVKGVAAIKAEYLVPTSSLTVVEYDDD-EAEGGDREGESKPRNKKKQKGQNHKRDLKQKK 84
Query: 74 DCY--CPFLKDSTLEQTCKYG-EKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIA 130
D CP L D ++ C+ G +KC+F HD +++SKP+DI C VF GYCP GI
Sbjct: 85 DIIKLCPSLIDPEDDRICQVGADKCRFHHDIASYLESKPQDIDGICPVFEALGYCPTGIK 144
Query: 131 CRFGSSHLDENGGNIVKE-DVLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSEKICK 189
CR+ SH + ++K+ D ++ K T N VN + + + +++K Y F+ S+ + K
Sbjct: 145 CRWLKSHYNPETSKLIKDGDKMETAKTT--NYEVNHIDKDQKMEMQKKKYFFKISQPVIK 202
Query: 190 ------ENKAS----KNENKDTD 202
+N+A+ K E KD +
Sbjct: 203 YLDSRIQNEANLAKQKEERKDNE 225
Score = 195 (73.7 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 45/115 (39%), Positives = 68/115 (59%)
Query: 503 NIIHNFMPKFRDWG-ASLITLHGRTREQRYTKQADWDYIEKCAQLCSP------------ 549
N N + + + G A+ ITLHGR+R+QRY+K+ADW+YI + +
Sbjct: 388 NTAVNLVSRVLEEGNAAAITLHGRSRQQRYSKEADWNYIAEVGTVVKNWNEQQKEDKEGR 447
Query: 550 --APLY--GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFD 600
P+Y GNGD+ S+ED+ E + + I VM+ RGALIKPWIF+E++ ++ D
Sbjct: 448 DRDPVYFVGNGDVYSHEDWYEHVN-TDGIDSVMVARGALIKPWIFEEVEAQQYLD 501
>TIGR_CMR|CJE_0118 [details] [associations]
symbol:CJE_0118 "tRNA-dihydrouridine synthase B"
species:195099 "Campylobacter jejuni RM1221" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 Gene3D:1.10.1200.80 OMA:ECAKEHL
RefSeq:YP_178142.1 ProteinModelPortal:Q5HX43 STRING:Q5HX43
GeneID:3230881 KEGG:cjr:CJE0118 PATRIC:20041943
ProtClustDB:CLSK872423 BioCyc:CJEJ195099:GJC0-122-MONOMER
Uniprot:Q5HX43
Length = 308
Score = 222 (83.2 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 48/117 (41%), Positives = 71/117 (60%)
Query: 256 DWQGK-LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED 314
D+ K L+L+P+ +LPFR + KK+GADIT SEM + L+ S + +++R E E+
Sbjct: 3 DFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNALVYESSKTLHMLERAELEN 62
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLF 371
+ VQ+ G + VL K Q+L E VD +D N GCP+ + KQ +GS LL+ LF
Sbjct: 63 PYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVVKQCAGSALLENLELF 119
Score = 191 (72.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 48/142 (33%), Positives = 75/142 (52%)
Query: 355 IYKQGSGSGLLQRANL---FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY 411
+Y+ +L+RA L + VQ+ G + VL K Q+L E VD +D N GCP+ +
Sbjct: 45 VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNKVV 104
Query: 412 KQGSGSGLLQRANILQSVITCMNEVSSLPIT-VKTRTGIHKDNNIIHNFMPKF-RDWGAS 469
KQ +GS LL+ + ++++ + E + +T VK R G N M K G
Sbjct: 105 KQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGF---NEKYPEKMAKICESLGVD 161
Query: 470 LITLHGRTREQRYTKQADWDYI 491
I++HGRTR+Q Y+ +AD+ I
Sbjct: 162 FISIHGRTRKQLYSGKADYGSI 183
Score = 143 (55.4 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G I++HGRTR+Q Y+ +AD+ I A+ P+ NGDI + + + K
Sbjct: 159 GVDFISIHGRTRKQLYSGKADYGSIAS-AKASVKIPVIANGDINAQN--AKEVYKITKCD 215
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFD 600
G+MIGR ++ PWIF EIK K D
Sbjct: 216 GLMIGRASVGNPWIFYEIKSGKSVD 240
>UNIPROTKB|K7ER20 [details] [associations]
symbol:DUS3L "tRNA-dihydrouridine(47) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AC011499 PANTHER:PTHR11082 HGNC:HGNC:26920
Ensembl:ENST00000592468 Uniprot:K7ER20
Length = 139
Score = 275 (101.9 bits), Expect = 3.4e-23, P = 3.4e-23
Identities = 47/101 (46%), Positives = 69/101 (68%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
GVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ Q ++
Sbjct: 2 GVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVR 61
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLIT 472
MN+V +P+TVK RTG+ + N+ H +P+ RDWG +L+T
Sbjct: 62 GMNQVLDVPLTVKIRTGVQERVNLAHRLLPELRDWGVALVT 102
Score = 158 (60.7 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLC 376
GVQL G P +TKC +LL + VDFVD+N+GCPI+ +YK+G G L+ R+ F +
Sbjct: 2 GVQLEGAFPDTMTKCAELLSRTVEVDFVDINVGCPIDLVYKKGGGCALMNRSTKFQQIVR 61
Query: 377 GNN 379
G N
Sbjct: 62 GMN 64
Score = 66 (28.3 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 503 NIIHNFMPKFRDWGASLIT 521
N+ H +P+ RDWG +L+T
Sbjct: 84 NLAHRLLPELRDWGVALVT 102
>TIGR_CMR|NSE_0373 [details] [associations]
symbol:NSE_0373 "putative tRNA-dihydrouridine synthase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_506262.1
ProteinModelPortal:Q2GE34 STRING:Q2GE34 GeneID:3932261
KEGG:nse:NSE_0373 PATRIC:22680819 OMA:ECAKEHL
ProtClustDB:CLSK2527833 BioCyc:NSEN222891:GHFU-398-MONOMER
Uniprot:Q2GE34
Length = 331
Score = 183 (69.5 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 42/132 (31%), Positives = 68/132 (51%)
Query: 364 LLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA 423
L R ++ +QL G P V+ + ++ E M +D+N GCP++ + +GS L++
Sbjct: 62 LSPREDITAIQLAGFEPDVMAEAAKI-NEDMGAKIIDINFGCPVKKVVNGYAGSYLMKDE 120
Query: 424 NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF----RDWGASLITLHGRTRE 479
++ + +P+T+K RTG D N H PK D G +IT+HGRTR
Sbjct: 121 CHAAKILEATVKAVKIPVTLKMRTGW--DEN--HRNAPKLAKIAEDLGIKMITIHGRTRA 176
Query: 480 QRYTKQADWDYI 491
Q Y ++DW +I
Sbjct: 177 QMYKGKSDWQFI 188
Score = 169 (64.5 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 501 DNNIIHNFMPKF----RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
D N H PK D G +IT+HGRTR Q Y ++DW +I P+ NG
Sbjct: 147 DEN--HRNAPKLAKIAEDLGIKMITIHGRTRAQMYKGKSDWQFIRTVKNTVK-IPVIANG 203
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPW 588
DI +YED +L +S + G+MIGRGA KPW
Sbjct: 204 DIKTYEDAERALVESGA-DGIMIGRGAYGKPW 234
Score = 150 (57.9 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P++ V ++P+R L K +GA + SEM + ++ + + ED+ +QL G
Sbjct: 16 LAPMSGVTDMPYRDLVKSFGAGLVVSEMIASRAMILKTKDTMKKVSLSPREDITAIQLAG 75
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
P V+ + ++ E M +D+N GCP++ + +GS L++
Sbjct: 76 FEPDVMAEAAKI-NEDMGAKIIDINFGCPVKKVVNGYAGSYLMK 118
>TIGR_CMR|ECH_0758 [details] [associations]
symbol:ECH_0758 "putative tRNA-dihydrouridine synthase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006400
"tRNA modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 RefSeq:YP_507556.1
ProteinModelPortal:Q2GG77 STRING:Q2GG77 GeneID:3927061
KEGG:ech:ECH_0758 PATRIC:20576950 ProtClustDB:CLSK749467
BioCyc:ECHA205920:GJNR-761-MONOMER Uniprot:Q2GG77
Length = 317
Score = 200 (75.5 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 46/142 (32%), Positives = 77/142 (54%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G +P ++ +L E M +D+N GCP++ + +GS L++ ++
Sbjct: 66 VQLAGCDPTIMADAAKL-NEDMGAQIIDINFGCPVKKVVNSYAGSALMKDETTAAKILES 124
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKF----RDWGASLITLHGRTREQRYTKQADW 488
+ + +P+T+K RTG DNN +++ PK + G +IT+HGRTR Q +T +ADW
Sbjct: 125 VVKAVKIPVTLKMRTGW--DNNNLNS--PKLAKIAEETGIKMITIHGRTRTQMFTGKADW 180
Query: 489 DYI---EKCAQLCSRDNNIIHN 507
+I +KC ++ N I N
Sbjct: 181 KFIRNIKKCVKIPVIVNGDIKN 202
Score = 175 (66.7 bits), Expect = 6.7e-21, Sum P(2) = 6.7e-21
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 501 DNNIIHNFMPKF----RDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG 556
DNN +++ PK + G +IT+HGRTR Q +T +ADW +I + C P+ NG
Sbjct: 142 DNNNLNS--PKLAKIAEETGIKMITIHGRTRTQMFTGKADWKFIRNIKK-CVKIPVIVNG 198
Query: 557 DILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
DI + D SL++S + G+MIGRGA KPW +
Sbjct: 199 DIKNLNDIKTSLEESQA-DGIMIGRGAYGKPWFINQ 233
Score = 140 (54.3 bits), Expect = 6.7e-21, Sum P(2) = 6.7e-21
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P++ V + PFR L K GA + SEM + ++ + Q +++ + + VQL G
Sbjct: 14 LAPMSGVTDFPFRYLVKSLGAGLLVSEMIASRAMIIQTKQS---LQKSQIQINTAVQLAG 70
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+P ++ +L E M +D+N GCP++ + +GS L++
Sbjct: 71 CDPTIMADAAKL-NEDMGAQIIDINFGCPVKKVVNSYAGSALMK 113
>UNIPROTKB|Q3A9L8 [details] [associations]
symbol:CHY_2369 "tRNA-dihydrouridine synthase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 221 (82.9 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 43/126 (34%), Positives = 74/126 (58%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++P + + +++EE +D+N+GCP I K G G+ L+ + + + ++
Sbjct: 71 VQIFGSSPEKMAEAARIVEEAGA-SMIDINMGCPAPKIVKNGEGAALMLKPELAEKIVMA 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ S+P++VK R G D+N ++ F + GA LIT+HGRTREQ Y+ +ADW+
Sbjct: 130 VKNAVSVPVSVKIRKGF--DDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGKADWEI 187
Query: 491 IEKCAQ 496
I + Q
Sbjct: 188 IRRVKQ 193
Score = 165 (63.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 37/95 (38%), Positives = 55/95 (57%)
Query: 501 DNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
D+N ++ F + GA LIT+HGRTREQ Y+ +ADW+ I + Q + GNGD+
Sbjct: 147 DDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGKADWEIIRRVKQAVK-VKVAGNGDV 205
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S + E L+ + + VMIGR + PW+ Q+I
Sbjct: 206 DSPQKAKEMLELT-GVDFVMIGRAVMGNPWLIQQI 239
Score = 140 (54.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 31/108 (28%), Positives = 57/108 (52%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
++P+ V + FR +C+ +GA +T +EM LL + + +I VQ+ G
Sbjct: 16 VAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIFG 75
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
++P + + +++EE A +D+N+GCP I K G G+ L+ + L
Sbjct: 76 SSPEKMAEAARIVEEAGA-SMIDINMGCPAPKIVKNGEGAALMLKPEL 122
>TIGR_CMR|CHY_2369 [details] [associations]
symbol:CHY_2369 "putative TIM-barrel protein, NifR3
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000141
GenomeReviews:CP000141_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_361166.1 ProteinModelPortal:Q3A9L8
STRING:Q3A9L8 GeneID:3727443 KEGG:chy:CHY_2369 PATRIC:21277805
HOGENOM:HOG000217853 BioCyc:CHYD246194:GJCN-2368-MONOMER
Uniprot:Q3A9L8
Length = 321
Score = 221 (82.9 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 43/126 (34%), Positives = 74/126 (58%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++P + + +++EE +D+N+GCP I K G G+ L+ + + + ++
Sbjct: 71 VQIFGSSPEKMAEAARIVEEAGA-SMIDINMGCPAPKIVKNGEGAALMLKPELAEKIVMA 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ S+P++VK R G D+N ++ F + GA LIT+HGRTREQ Y+ +ADW+
Sbjct: 130 VKNAVSVPVSVKIRKGF--DDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGKADWEI 187
Query: 491 IEKCAQ 496
I + Q
Sbjct: 188 IRRVKQ 193
Score = 165 (63.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 37/95 (38%), Positives = 55/95 (57%)
Query: 501 DNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
D+N ++ F + GA LIT+HGRTREQ Y+ +ADW+ I + Q + GNGD+
Sbjct: 147 DDNTVNAIEFAQRMEAAGADLITVHGRTREQFYSGKADWEIIRRVKQAVK-VKVAGNGDV 205
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEI 593
S + E L+ + + VMIGR + PW+ Q+I
Sbjct: 206 DSPQKAKEMLELT-GVDFVMIGRAVMGNPWLIQQI 239
Score = 140 (54.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 31/108 (28%), Positives = 57/108 (52%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
++P+ V + FR +C+ +GA +T +EM LL + + +I VQ+ G
Sbjct: 16 VAPMAGVTDKAFRLICQSFGAGLTVTEMINDLALLHGNSKTRQMIDLQGEAMPVAVQIFG 75
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
++P + + +++EE A +D+N+GCP I K G G+ L+ + L
Sbjct: 76 SSPEKMAEAARIVEEAGA-SMIDINMGCPAPKIVKNGEGAALMLKPEL 122
>TIGR_CMR|APH_0575 [details] [associations]
symbol:APH_0575 "putative tRNA-dihydrouridine synthase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000235
GenomeReviews:CP000235_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_505166.1 ProteinModelPortal:Q2GKD5 STRING:Q2GKD5
GeneID:3930783 KEGG:aph:APH_0575 PATRIC:20949816
ProtClustDB:CLSK2766800 BioCyc:APHA212042:GHPM-599-MONOMER
Uniprot:Q2GKD5
Length = 315
Score = 173 (66.0 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 33/79 (41%), Positives = 51/79 (64%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G +IT+HGRTR Q ++ ADW ++++ + C P+ NGDI + +D +L +S +
Sbjct: 155 DVGIQMITIHGRTRSQMFSGSADWKFVKRVKE-CVKIPVIVNGDIRTLDDIVVALNESGA 213
Query: 574 ISGVMIGRGALIKPWIFQE 592
GVMIGRGA KPW+ ++
Sbjct: 214 -DGVMIGRGAYGKPWLIKQ 231
Score = 171 (65.3 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 49/199 (24%), Positives = 90/199 (45%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G P ++ + ++ E + +D+N GCP + + +GS L++ I ++
Sbjct: 64 VQLAGCTPEIMAEAAKI-NEDLGAKSIDLNFGCPAKKVVDGYAGSALMKDEVIATKIMES 122
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + +P+TVK R G N D G +IT+HGRTR Q ++ ADW +++
Sbjct: 123 VVKAVKVPVTVKMRMGWDTTNLNAPTLAKVAEDVGIQMITIHGRTRSQMFSGSADWKFVK 182
Query: 493 K---CAQL---CSRDNNIIHNFMPKFRDWGASLITL-HGRTREQRYTKQADWDYIEKCAQ 545
+ C ++ + D + + + + GA + + G + KQA +++
Sbjct: 183 RVKECVKIPVIVNGDIRTLDDIVVALNESGADGVMIGRGAYGKPWLIKQA-LSFMKNSEI 241
Query: 546 LCSPAPLYGNGDILSYEDY 564
L P IL + DY
Sbjct: 242 LPEPTKSEKLAIILDHYDY 260
Score = 126 (49.4 bits), Expect = 3.3e-19, Sum P(2) = 3.3e-19
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFG 317
+ + L+P++ V +LPFR +K GA + SEM + ++ + Q +++ E
Sbjct: 7 ENPVILAPMSGVTDLPFRTTVRKLGAGLLISEMVASRAMILKTRQS---MQKSEVCPNTS 63
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
VQL G P ++ + ++ E + +D+N GCP + + +GS L++
Sbjct: 64 VQLAGCTPEIMAEAAKI-NEDLGAKSIDLNFGCPAKKVVDGYAGSALMK 111
>TIGR_CMR|GSU_1005 [details] [associations]
symbol:GSU_1005 "dihydrouridine synthase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI HOGENOM:HOG000217853 RefSeq:NP_952059.1
ProteinModelPortal:Q74EF7 GeneID:2685628 KEGG:gsu:GSU1005
PATRIC:22024782 ProtClustDB:CLSK828131
BioCyc:GSUL243231:GH27-991-MONOMER Uniprot:Q74EF7
Length = 325
Score = 177 (67.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 37/126 (29%), Positives = 71/126 (56%)
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
G+QL G++P V+ + ++ D +D+N+GCP++ + G+GS L++ + +++++
Sbjct: 72 GIQLFGDDPDVMGRVAATVDGYG--DLIDINMGCPVKKVVGTGAGSALMREPDKVRAIVR 129
Query: 432 CMNEVSSLPITVKTRTGIH-KDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + LP+TVK R+G +D N I + G + +TLH R+R Q + ADW
Sbjct: 130 AVRRATRLPLTVKIRSGWSCEDANFIQ-IARIAEEEGCNAVTLHPRSRAQMFEGTADWTK 188
Query: 491 IEKCAQ 496
+ + Q
Sbjct: 189 LAELKQ 194
Score = 158 (60.7 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 31/106 (29%), Positives = 61/106 (57%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
L L+P+ + NLPFR L ++ GA + +EM L++ + + L++ + G+QL
Sbjct: 16 LILAPMAGITNLPFRLLAREQGAGLCFTEMVSVNGLVREGKKSFELLRSVPGDRPLGIQL 75
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
G++P V+ + ++ D +D+N+GCP++ + G+GS L++
Sbjct: 76 FGDDPDVMGRVAATVDGYG--DLIDINMGCPVKKVVGTGAGSALMR 119
Score = 142 (55.0 bits), Expect = 5.4e-19, Sum P(2) = 5.4e-19
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + +TLH R+R Q + ADW + + Q + P+ G+GD+ S D L ++
Sbjct: 165 GCNAVTLHPRSRAQMFEGTADWTKLAELKQAVA-IPVIGSGDLFSAADVAAMLDRT-GCD 222
Query: 576 GVMIGRGALIKPWIFQE 592
GVMI RGAL PWIF++
Sbjct: 223 GVMIARGALGNPWIFRQ 239
>UNIPROTKB|Q81VW4 [details] [associations]
symbol:BA_0075 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
HOGENOM:HOG000217853 RefSeq:NP_842644.2 ProteinModelPortal:Q81VW4
IntAct:Q81VW4 DNASU:1087319 EnsemblBacteria:EBBACT00000009344
GeneID:1087319 KEGG:ban:BA_0075 PATRIC:18777630
ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/132 (29%), Positives = 66/132 (50%)
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+R +Q+ G L + +++ D +D+N+GCP+ I K +G+ L N
Sbjct: 70 EREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNK 129
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTK 484
+ ++ + + P+TVK R G +D+ I N R G ++ +HGRTR Q Y
Sbjct: 130 IYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERA-GGQVVAVHGRTRVQMYEG 188
Query: 485 QADWDYIEKCAQ 496
+ADWD I++ Q
Sbjct: 189 KADWDIIKQVKQ 200
Score = 159 (61.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G ++ +HGRTR Q Y +ADWD I++ Q + P+ GNGD+ + +D L + +
Sbjct: 171 GGQVVAVHGRTRVQMYEGKADWDIIKQVKQAVN-IPVIGNGDVATPQDAKRMLDEI-GVD 228
Query: 576 GVMIGRGALIKPW-IFQEIK 594
GVMIGR AL PW I++ +K
Sbjct: 229 GVMIGRAALGDPWMIYRTVK 248
Score = 135 (52.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 29/114 (25%), Positives = 56/114 (49%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
+ + + L+P+ V N FR K++GA + C+EM +L ++ + ++ E E
Sbjct: 15 EMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKP 74
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
+Q+ G L + +++ D +D+N+GCP+ I K +G+ L N
Sbjct: 75 LSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPN 128
>TIGR_CMR|BA_0075 [details] [associations]
symbol:BA_0075 "TIM-barrel protein, putative, NifR3 family"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 GenomeReviews:AE016879_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 HOGENOM:HOG000217853 RefSeq:NP_842644.2
ProteinModelPortal:Q81VW4 IntAct:Q81VW4 DNASU:1087319
EnsemblBacteria:EBBACT00000009344 GeneID:1087319 KEGG:ban:BA_0075
PATRIC:18777630 ProtClustDB:CLSK872617 Uniprot:Q81VW4
Length = 339
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 39/132 (29%), Positives = 66/132 (50%)
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
+R +Q+ G L + +++ D +D+N+GCP+ I K +G+ L N
Sbjct: 70 EREKPLSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPNK 129
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTK 484
+ ++ + + P+TVK R G +D+ I N R G ++ +HGRTR Q Y
Sbjct: 130 IYEMVAAVVDAVEKPVTVKMRIGWDEDHIFAIENAKAVERA-GGQVVAVHGRTRVQMYEG 188
Query: 485 QADWDYIEKCAQ 496
+ADWD I++ Q
Sbjct: 189 KADWDIIKQVKQ 200
Score = 159 (61.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G ++ +HGRTR Q Y +ADWD I++ Q + P+ GNGD+ + +D L + +
Sbjct: 171 GGQVVAVHGRTRVQMYEGKADWDIIKQVKQAVN-IPVIGNGDVATPQDAKRMLDEI-GVD 228
Query: 576 GVMIGRGALIKPW-IFQEIK 594
GVMIGR AL PW I++ +K
Sbjct: 229 GVMIGRAALGDPWMIYRTVK 248
Score = 135 (52.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 29/114 (25%), Positives = 56/114 (49%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
+ + + L+P+ V N FR K++GA + C+EM +L ++ + ++ E E
Sbjct: 15 EMKNPVVLAPMAGVCNSAFRLTVKEFGAGLVCAEMVSDKAILLNNKRTLDMLYIDEREKP 74
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRAN 369
+Q+ G L + +++ D +D+N+GCP+ I K +G+ L N
Sbjct: 75 LSLQIFGGEKETLVDAAKYVDQYTTADIIDINMGCPVPKIVKCDAGAKWLLDPN 128
>UNIPROTKB|Q9KV66 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE003852
GenomeReviews:AE003852_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05540 OMA:VTDQPFR
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:B82341
RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66 DNASU:2615014
GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 37/120 (30%), Positives = 68/120 (56%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++P ++ + Q E +D+N+GCP + + K+ +GS LL+ ++++ ++
Sbjct: 69 VQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ ++P+T+KTRTG DN + D G + LHGRTR Y +A++D I+
Sbjct: 128 VVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIK 187
Score = 154 (59.3 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 35/111 (31%), Positives = 63/111 (56%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL-KSSPQEWALIKRHESED-L 315
+ L ++P+ V + PFR LC ++GA + SEM L K++ + ++ HE E +
Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMV--HEGESGI 66
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
VQ+ G++P ++ + Q E A +D+N+GCP + + K+ +GS LL+
Sbjct: 67 RSVQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLR 116
Score = 131 (51.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G + LHGRTR Y +A++D I K + P+ NGDI S E L+ + +
Sbjct: 160 DCGIQALALHGRTRACMYKGEAEYDSI-KAVKAAVSIPVIANGDIDSPEKARYVLEYTGA 218
Query: 574 ISGVMIGRGALIKPWIFQEIK 594
+MIGR A +PWIFQEI+
Sbjct: 219 -DALMIGRPAQGRPWIFQEIQ 238
>TIGR_CMR|VC_0291 [details] [associations]
symbol:VC_0291 "NifR3/Smm1 family protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
PIR:B82341 RefSeq:NP_229946.1 ProteinModelPortal:Q9KV66
DNASU:2615014 GeneID:2615014 KEGG:vch:VC0291 PATRIC:20079629
ProtClustDB:CLSK873929 Uniprot:Q9KV66
Length = 322
Score = 190 (71.9 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 37/120 (30%), Positives = 68/120 (56%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++P ++ + Q E +D+N+GCP + + K+ +GS LL+ ++++ ++
Sbjct: 69 VQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLRYPDVIEDILKA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ ++P+T+KTRTG DN + D G + LHGRTR Y +A++D I+
Sbjct: 128 VVNAVNVPVTLKTRTGWDTDNKNCLSIAQLAEDCGIQALALHGRTRACMYKGEAEYDSIK 187
Score = 154 (59.3 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 35/111 (31%), Positives = 63/111 (56%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL-KSSPQEWALIKRHESED-L 315
+ L ++P+ V + PFR LC ++GA + SEM L K++ + ++ HE E +
Sbjct: 9 KNNLIVAPMAGVTDRPFRELCLRYGAGMAVSEMMSCNPALWKTAKSQNRMV--HEGESGI 66
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
VQ+ G++P ++ + Q E A +D+N+GCP + + K+ +GS LL+
Sbjct: 67 RSVQIAGSDPQLMAEAAQFSVENGA-QIIDINMGCPAKKVNKKLAGSALLR 116
Score = 131 (51.2 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G + LHGRTR Y +A++D I K + P+ NGDI S E L+ + +
Sbjct: 160 DCGIQALALHGRTRACMYKGEAEYDSI-KAVKAAVSIPVIANGDIDSPEKARYVLEYTGA 218
Query: 574 ISGVMIGRGALIKPWIFQEIK 594
+MIGR A +PWIFQEI+
Sbjct: 219 -DALMIGRPAQGRPWIFQEIQ 238
>UNIPROTKB|Q8EJR8 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 166 (63.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G +P ++ + Q EQ +D+N+GCP + + K+ +GS L+Q +++ ++
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGA-HIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +P+T+K RTG ++ D G + + +HGRTR+ Y A++D I+
Sbjct: 128 VVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGNAEYDTIK 187
Query: 493 KCAQ 496
Q
Sbjct: 188 AIKQ 191
Score = 148 (57.2 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR-----HES 312
+ +L ++P+ V + FR LC ++GA + SEM L S+P+ W K H
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEM------LSSNPEVWDTDKSRQRMTHSG 62
Query: 313 ED-LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
E+ + VQ+ G +P ++ + Q EQ A +D+N+GCP + + K+ +GS L+Q L
Sbjct: 63 EEGIRSVQIAGADPELMAQAAQFNVEQGA-HIIDINMGCPAKKVNKKLAGSALMQNPPL 120
Score = 135 (52.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G + + +HGRTR+ Y A++D I+ Q S P+ NGDI S E L +
Sbjct: 160 DCGIASLAVHGRTRQCMYKGNAEYDTIKAIKQNVS-IPVVANGDIDSPEKARFVLDYT-G 217
Query: 574 ISGVMIGRGALIKPWIFQEIK 594
+ +MIGRGA +PWIF+EI+
Sbjct: 218 VDALMIGRGAQGRPWIFREIQ 238
>TIGR_CMR|SO_0394 [details] [associations]
symbol:SO_0394 "conserved hypothetical protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:NP_716032.1 ProteinModelPortal:Q8EJR8 GeneID:1168271
KEGG:son:SO_0394 PATRIC:23520491 ProtClustDB:CLSK905725
Uniprot:Q8EJR8
Length = 322
Score = 166 (63.5 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 35/124 (28%), Positives = 66/124 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G +P ++ + Q EQ +D+N+GCP + + K+ +GS L+Q +++ ++
Sbjct: 69 VQIAGADPELMAQAAQFNVEQGA-HIIDINMGCPAKKVNKKLAGSALMQNPPLVKDILQA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +P+T+K RTG ++ D G + + +HGRTR+ Y A++D I+
Sbjct: 128 VVAAVDVPVTLKIRTGWEPEHRNGVQIAQIAEDCGIASLAVHGRTRQCMYKGNAEYDTIK 187
Query: 493 KCAQ 496
Q
Sbjct: 188 AIKQ 191
Score = 148 (57.2 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR-----HES 312
+ +L ++P+ V + FR LC ++GA + SEM L S+P+ W K H
Sbjct: 9 KNQLIVAPMAGVTDQAFRNLCLRYGAALAVSEM------LSSNPEVWDTDKSRQRMTHSG 62
Query: 313 ED-LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
E+ + VQ+ G +P ++ + Q EQ A +D+N+GCP + + K+ +GS L+Q L
Sbjct: 63 EEGIRSVQIAGADPELMAQAAQFNVEQGA-HIIDINMGCPAKKVNKKLAGSALMQNPPL 120
Score = 135 (52.6 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G + + +HGRTR+ Y A++D I+ Q S P+ NGDI S E L +
Sbjct: 160 DCGIASLAVHGRTRQCMYKGNAEYDTIKAIKQNVS-IPVVANGDIDSPEKARFVLDYT-G 217
Query: 574 ISGVMIGRGALIKPWIFQEIK 594
+ +MIGRGA +PWIF+EI+
Sbjct: 218 VDALMIGRGAQGRPWIFREIQ 238
>UNIPROTKB|O53835 [details] [associations]
symbol:dus "Probable tRNA-dihydrouridine synthase"
species:1773 "Mycobacterium tuberculosis" [GO:0019217 "regulation
of fatty acid metabolic process" evidence=IDA] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0050660 GO:GO:0019217 EMBL:BX842574
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 PIR:G70810
RefSeq:NP_215338.1 RefSeq:NP_335273.1 RefSeq:YP_006514173.1
ProteinModelPortal:O53835 SMR:O53835
EnsemblBacteria:EBMYCT00000002102 EnsemblBacteria:EBMYCT00000070313
GeneID:13318720 GeneID:885380 GeneID:926148 KEGG:mtc:MT0845
KEGG:mtu:Rv0823c KEGG:mtv:RVBD_0823c PATRIC:18123594
TubercuList:Rv0823c HOGENOM:HOG000217856 OMA:PIARKHI
ProtClustDB:CLSK871859 Uniprot:O53835
Length = 389
Score = 162 (62.1 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
GA+ + LH RT QRY+ ADW+ I + Q P+ GNGDI D ++ +
Sbjct: 185 GAAAVALHARTAAQRYSGTADWEQIARLKQHVRTIPVLGNGDIYDAGDAL-AMMSTTGCD 243
Query: 576 GVMIGRGALIKPWIFQEI 593
GV+IGRG L +PW+F E+
Sbjct: 244 GVVIGRGCLGRPWLFAEL 261
Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 37/128 (28%), Positives = 65/128 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL +P +++ + + D +D+N GCP+ + K+G G+ L + + ++
Sbjct: 88 LQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFGQIVAA 147
Query: 433 M---NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDW-GASLITLHGRTREQRYTKQADW 488
E + +P+TVK R GI D + H + + GA+ + LH RT QRY+ ADW
Sbjct: 148 AVRATEGTDIPVTVKFRIGID-DAHHTHLDAGRIAEAEGAAAVALHARTAAQRYSGTADW 206
Query: 489 DYIEKCAQ 496
+ I + Q
Sbjct: 207 EQIARLKQ 214
Score = 116 (45.9 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 263 LSPLTTVGNLPFRRLCK-----KWG--ADITCSEMAVATELLKSSPQEWALIKRHESEDL 315
L+P+ V N+ FR LC+ K G + + EM A L++ P + E
Sbjct: 26 LAPMAGVTNVAFRALCRQLEQSKVGTVSGLYVCEMVTARALIERHPVTMHMTTFSADESP 85
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFG 372
+QL +P +++ + D +D+N GCP+ + K+G G+ L + LFG
Sbjct: 86 RSLQLYTVDPDTTYAAARMIAGEGLADHIDMNFGCPVPKVTKRGGGAALPFKRRLFG 142
>UNIPROTKB|Q607L4 [details] [associations]
symbol:MCA1745 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855 KO:K05540
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 OMA:PIARKHI
RefSeq:YP_114184.1 ProteinModelPortal:Q607L4 GeneID:3104455
KEGG:mca:MCA1745 PATRIC:22607332 Uniprot:Q607L4
Length = 327
Score = 156 (60.0 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 35/109 (32%), Positives = 62/109 (56%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESED-LFGVQLC 321
L+P+ V +LPFRRLC+++GA + SEM A+ L+++ + L + H E VQ+
Sbjct: 14 LAPMAGVTDLPFRRLCRQFGAGLAVSEMISASPALQATRKS-RLRQDHRGEPGPISVQIV 72
Query: 322 GNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
G +P + + + + + D +D+N+GCP + + +GS LL+ L
Sbjct: 73 GADPREMAEAARRTVD-LGADIIDINMGCPAKKVCNVAAGSALLRDEKL 120
Score = 132 (51.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 29/119 (24%), Positives = 60/119 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G +P + + + + + D +D+N+GCP + + +GS LL+ ++ +++
Sbjct: 69 VQIVGADPREMAEAARRTVD-LGADIIDINMGCPAKKVCNVAAGSALLRDEKLVANILEA 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ + +P+T+K RTG + + G +T+HGRTR + A++ I
Sbjct: 128 VVQAVPVPVTLKIRTGWDSASRNAVSIGKIAESAGIRALTVHGRTRACGFAGAAEYSTI 186
Score = 117 (46.2 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G +T+HGRTR + A++ I + + P+ NGDI S E++ +S
Sbjct: 162 GIRALTVHGRTRACGFAGAAEYSTITEVKKAIG-IPVIANGDIDS-PGKAEAVLRSTGAD 219
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFD 600
VMIGRGA +PW+ +EI + +L D
Sbjct: 220 AVMIGRGAWGRPWLLREI-DARLKD 243
>UNIPROTKB|Q87VS1 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:NP_794598.1 ProteinModelPortal:Q87VS1
GeneID:1186547 KEGG:pst:PSPTO_4864 PATRIC:20001236
ProtClustDB:CLSK868944 BioCyc:PSYR223283:GJIX-4930-MONOMER
Uniprot:Q87VS1
Length = 337
Score = 158 (60.7 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 34/127 (26%), Positives = 62/127 (48%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G + ++ + E + +D+N+GCP + + + +GS LL+ ++ ++
Sbjct: 72 VQIAGGDAQMMADAARANVE-LGAQIIDINMGCPAKKVCNKAAGSALLKDEQLVNDILQA 130
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +P+T+K RTG +DN G + +HGRTR YT +A++D I
Sbjct: 131 VVAAVDVPVTLKIRTGWDRDNRNGLTVAKIAEQAGIQALAVHGRTRADLYTGEAEYDTIA 190
Query: 493 KCAQLCS 499
Q S
Sbjct: 191 MIKQAVS 197
Score = 141 (54.7 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + +HGRTR YT +A++D I Q S P++ NGDI S E L+ + +
Sbjct: 165 GIQALAVHGRTRADLYTGEAEYDTIAMIKQAVS-IPVFANGDIDSPEKARHVLQATGA-D 222
Query: 576 GVMIGRGALIKPWIFQEIK 594
G++IGR A +PWIF+EI+
Sbjct: 223 GLLIGRAAQGRPWIFREIE 241
Score = 134 (52.2 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 32/111 (28%), Positives = 56/111 (50%)
Query: 261 LYLSPLTTVGNLPFRRLCKKWGADITCSEMAVAT-ELLKSSPQEWALIKRHESEDLFGVQ 319
L L+P+ V + PFR+LC++ GA + SEM + L S +I + E VQ
Sbjct: 15 LILAPMAGVTDQPFRQLCRQLGAGLVVSEMVTSDMSLWNSRKSRLRMIHAGDPEPR-SVQ 73
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ G + ++ + E + +D+N+GCP + + + +GS LL+ L
Sbjct: 74 IAGGDAQMMADAARANVE-LGAQIIDINMGCPAKKVCNKAAGSALLKDEQL 123
>TIGR_CMR|SPO_2089 [details] [associations]
symbol:SPO_2089 "tRNA-dihydrouridine synthase, putative"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006400 "tRNA
modification" evidence=ISS] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=ISS] InterPro:IPR001269
InterPro:IPR004652 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
OMA:PIARKHI RefSeq:YP_167319.1 ProteinModelPortal:Q5LRN6
GeneID:3193240 KEGG:sil:SPO2089 PATRIC:23377519
ProtClustDB:CLSK2767269 Uniprot:Q5LRN6
Length = 327
Score = 145 (56.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 34/118 (28%), Positives = 65/118 (55%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQL G + + + + + + ++ +D+N+GCP + + SGS LL+ + +I
Sbjct: 71 VQLAGRDTHWIAEAARQVADRGA-RVIDINMGCPAKKVTNGYSGSALLKTPDHALRLIEA 129
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADW 488
+ +P+T+KTR G D+ +++ + + + G ++T+HGRTR Q Y +ADW
Sbjct: 130 VVAAVDVPVTLKTRLGW--DDTLMNAPDVARRAAEAGVRMVTIHGRTRCQFYKGRADW 185
Score = 143 (55.4 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G ++T+HGRTR Q Y +ADW I + PL NGDI ++L +S +
Sbjct: 164 GVRMVTIHGRTRCQFYKGRADWAAIAAVREAVD-VPLIANGDITCAHTARQALDRSGA-D 221
Query: 576 GVMIGRGALIKPWIFQEI 593
GVM+GRGA +PW+ +I
Sbjct: 222 GVMVGRGAQGRPWLLAQI 239
Score = 124 (48.7 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 32/107 (29%), Positives = 61/107 (57%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHE-SEDL--FGVQ 319
L+P+ + + PFR L ++GA + SEM + E++++ P + +R E S D+ VQ
Sbjct: 16 LAPMAGITDRPFRDLVMEFGAGMVVSEMVASQEMVQAKP---GVRERAELSADVENTAVQ 72
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
L G + + + + + + ++ A +D+N+GCP + + SGS LL+
Sbjct: 73 LAGRDTHWIAEAARQVADRGA-RVIDINMGCPAKKVTNGYSGSALLK 118
>UNIPROTKB|Q489F6 [details] [associations]
symbol:CPS_0550 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80
TIGRFAMs:TIGR00737 RefSeq:YP_267308.1 ProteinModelPortal:Q489F6
STRING:Q489F6 GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/125 (26%), Positives = 63/125 (50%)
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
A + VQ+ G+ P L ++ + +D+N+GCP + + K+ +GS LL+ ++
Sbjct: 64 AGIRSVQIAGSCPDELAFAAKVNADNGA-QIIDINMGCPAKKVNKKLAGSALLREPAQVE 122
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
++ + +P+T+K RTG +D + G + + +HGRTR Y A+
Sbjct: 123 RIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRNDFYKGNAE 182
Query: 488 WDYIE 492
+D I+
Sbjct: 183 YDTIK 187
Score = 138 (53.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + + +HGRTR Y A++D I K +L P+ NGDI S E + L + +
Sbjct: 162 GIASLAVHGRTRNDFYKGNAEYDTI-KAIKLAISIPVVANGDITSPEKALQVLDHTGA-D 219
Query: 576 GVMIGRGALIKPWIFQEI 593
+M+GRGA +PWIF+EI
Sbjct: 220 AIMVGRGAQGRPWIFREI 237
Score = 124 (48.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR-----H-ESE 313
++ L+P+ + + PFR+LC + GA + SEM L S+P+ W K H ++
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEM------LSSNPKVWNTEKSKLRMLHGDAA 64
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+ VQ+ G+ P L ++ + A +D+N+GCP + + K+ +GS LL+
Sbjct: 65 GIRSVQIAGSCPDELAFAAKVNADNGA-QIIDINMGCPAKKVNKKLAGSALLR 116
>TIGR_CMR|CPS_0550 [details] [associations]
symbol:CPS_0550 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004652 InterPro:IPR013785
InterPro:IPR018517 InterPro:IPR024036 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217855
KO:K05540 OMA:VTDQPFR Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737
RefSeq:YP_267308.1 ProteinModelPortal:Q489F6 STRING:Q489F6
GeneID:3522222 KEGG:cps:CPS_0550 PATRIC:21464439
BioCyc:CPSY167879:GI48-645-MONOMER Uniprot:Q489F6
Length = 338
Score = 141 (54.7 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 33/125 (26%), Positives = 63/125 (50%)
Query: 368 ANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQ 427
A + VQ+ G+ P L ++ + +D+N+GCP + + K+ +GS LL+ ++
Sbjct: 64 AGIRSVQIAGSCPDELAFAAKVNADNGA-QIIDINMGCPAKKVNKKLAGSALLREPAQVE 122
Query: 428 SVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
++ + +P+T+K RTG +D + G + + +HGRTR Y A+
Sbjct: 123 RIVQSVVNAVDIPVTLKIRTGWCEDTRNGIEIAKIAENSGIASLAVHGRTRNDFYKGNAE 182
Query: 488 WDYIE 492
+D I+
Sbjct: 183 YDTIK 187
Score = 138 (53.6 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 31/78 (39%), Positives = 45/78 (57%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + + +HGRTR Y A++D I K +L P+ NGDI S E + L + +
Sbjct: 162 GIASLAVHGRTRNDFYKGNAEYDTI-KAIKLAISIPVVANGDITSPEKALQVLDHTGA-D 219
Query: 576 GVMIGRGALIKPWIFQEI 593
+M+GRGA +PWIF+EI
Sbjct: 220 AIMVGRGAQGRPWIFREI 237
Score = 124 (48.7 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 34/113 (30%), Positives = 61/113 (53%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR-----H-ESE 313
++ L+P+ + + PFR+LC + GA + SEM L S+P+ W K H ++
Sbjct: 11 QVMLAPMAGITDQPFRQLCCQLGAGLAVSEM------LSSNPKVWNTEKSKLRMLHGDAA 64
Query: 314 DLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
+ VQ+ G+ P L ++ + A +D+N+GCP + + K+ +GS LL+
Sbjct: 65 GIRSVQIAGSCPDELAFAAKVNADNGA-QIIDINMGCPAKKVNKKLAGSALLR 116
>UNIPROTKB|P0ABT5 [details] [associations]
symbol:dusB "tRNA-dihydrouridine synthase B" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004652
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 EMBL:X62399 EMBL:M95784 EMBL:S67010 EMBL:J03816
EMBL:J03245 PIR:B47043 RefSeq:NP_417726.1 RefSeq:YP_491442.1
ProteinModelPortal:P0ABT5 SMR:P0ABT5 DIP:DIP-48240N IntAct:P0ABT5
EnsemblBacteria:EBESCT00000004917 EnsemblBacteria:EBESCT00000016888
GeneID:12932871 GeneID:947707 KEGG:ecj:Y75_p3178 KEGG:eco:b3260
PATRIC:32121950 EchoBASE:EB1287 EcoGene:EG11311
HOGENOM:HOG000217855 KO:K05540 OMA:VTDQPFR ProtClustDB:PRK10415
BioCyc:EcoCyc:EG11311-MONOMER BioCyc:ECOL316407:JW3228-MONOMER
BioCyc:MetaCyc:EG11311-MONOMER Genevestigator:P0ABT5
Gene3D:1.10.1200.80 TIGRFAMs:TIGR00737 Uniprot:P0ABT5
Length = 321
Score = 172 (65.6 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 36/127 (28%), Positives = 68/127 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ G++P + ++ E +D+N+GCP + + ++ +GS LLQ ++++S++T
Sbjct: 69 VQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTE 127
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ +P+T+K RTG ++ D G +T+HGRTR + +A++D I
Sbjct: 128 VVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIR 187
Query: 493 KCAQLCS 499
Q S
Sbjct: 188 AVKQKVS 194
Score = 138 (53.6 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 36/115 (31%), Positives = 61/115 (53%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKR-----HES 312
+ +L +P+ + + PFR LC + GA +T SEM + S+PQ W K H
Sbjct: 9 RNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEM------MSSNPQVWESDKSRLRMVHID 62
Query: 313 ED-LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
E + VQ+ G++P + ++ E A +D+N+GCP + + ++ +GS LLQ
Sbjct: 63 EPGIRTVQIAGSDPKEMADAARINVESGA-QIIDINMGCPAKKVNRKLAGSALLQ 116
Score = 119 (46.9 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 30/81 (37%), Positives = 43/81 (53%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D G +T+HGRTR + +A++D I Q S P+ NGDI L + +
Sbjct: 160 DCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVIANGDITDPLKARAVLDYTGA 218
Query: 574 ISGVMIGRGALIKPWIFQEIK 594
+MIGR A +PWIF+EI+
Sbjct: 219 -DALMIGRAAQGRPWIFREIQ 238
>DICTYBASE|DDB_G0291360 [details] [associations]
symbol:dus4l "tRNA-dihydrouridine synthase 4-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 dictyBase:DDB_G0291360
GO:GO:0005739 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY RefSeq:XP_635163.1
ProteinModelPortal:Q54ES7 STRING:Q54ES7 EnsemblProtists:DDB0238074
GeneID:8628109 KEGG:ddi:DDB_G0291360 ProtClustDB:CLSZ2429554
Uniprot:Q54ES7
Length = 344
Score = 141 (54.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 40/149 (26%), Positives = 68/149 (45%)
Query: 217 EEINTPNTDDVIKVQEETKSGPVLDTDXXXXXXXXXXXXDWQGKLYLSPLTTVGNLPFRR 276
EE N N + +E+ + D+D ++ K+ +P+ LPFR
Sbjct: 16 EEFNNNNNSNNNNEEEDKPIVKIYDSDKQNLMDRINSG-EFM-KIQ-APMVRFSRLPFRM 72
Query: 277 LCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKCTQLLE 336
L KKWG DIT + M +A E +S + ++ ++ VQ NN L + ++
Sbjct: 73 LVKKWGCDITYTPMIMAAEFNRSEAARDSDFTINKLDEPLIVQFGVNNAEELVSAAEKVK 132
Query: 337 EQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
+ +D+N GCP ++ K+G G+ LL
Sbjct: 133 DYC--QGIDINCGCPQRWVMKEGFGANLL 159
Score = 126 (49.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ NN L + +++ +D+N GCP ++ K+G G+ LL + ++
Sbjct: 114 VQFGVNNAEELVSAAEKVKDYC--QGIDINCGCPQRWVMKEGFGANLLLHPERIYDMVKQ 171
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+N +PI++K R + D + G S IT+HGRT + + D+D I+
Sbjct: 172 INNRVPIPISIKIR--VQSDLKDTIELAKRAERIGVSWITVHGRTSAMKSSHPVDYDAIK 229
Score = 117 (46.2 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT + + D+D I K + P++ NGD+ + E +++ ++
Sbjct: 204 GVSWITVHGRTSAMKSSHPVDYDAI-KLVKDNVTLPVFANGDVFTLSQSNE-IREKTGVN 261
Query: 576 GVMIGRGALIKPWIFQ 591
GVM RG L P +FQ
Sbjct: 262 GVMSARGLLTNPALFQ 277
>POMBASE|SPBC36B7.04 [details] [associations]
symbol:SPBC36B7.04 "tRNA dihydrouridine synthase Dus1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006400 "tRNA modification" evidence=ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISO]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 PomBase:SPBC36B7.04 GO:GO:0005739
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 PANTHER:PTHR11082 RefSeq:NP_595986.1
ProteinModelPortal:Q9HGN6 STRING:Q9HGN6 EnsemblFungi:SPBC36B7.04.1
GeneID:2541048 KEGG:spo:SPBC36B7.04 OMA:RCQPYFR OrthoDB:EOG480N5B
NextBio:20802162 Uniprot:Q9HGN6
Length = 399
Score = 194 (73.4 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 46/123 (37%), Positives = 72/123 (58%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQSVIT 431
+Q CGN+P ++ K ++ D VDVNLGCP + I K+G GS L + N+++S+IT
Sbjct: 79 IQFCGNDPEIMLKAAKIAAPYC--DAVDVNLGCP-QGIAKKGKYGSFLQENWNLIESIIT 135
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
++ S+P+T K R I D ++ GAS++ +HGR REQ+ +T ADW+
Sbjct: 136 KLHTELSIPVTAKIR--IFPDPQKTLDYAKMILKAGASILAVHGRLREQKGHFTGIADWE 193
Query: 490 YIE 492
I+
Sbjct: 194 QIQ 196
Score = 129 (50.5 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQ-LCSPAPLYGNGDILSYEDYTESLKKSP 572
GAS++ +HGR REQ+ +T ADW+ I+ + L S L+ NG+IL +D +K +
Sbjct: 169 GASILAVHGRLREQKGHFTGIADWEQIQMLRKNLPSETVLFANGNILHAQDIDRCIKYT- 227
Query: 573 SISGVMIGRGALIKPWIF 590
+ GV+ G+L P IF
Sbjct: 228 GVDGVLSAEGSLYNPRIF 245
Score = 121 (47.7 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 38/115 (33%), Positives = 56/115 (48%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH---ESEDLF 316
K L+P+ LP+R L ++ GAD+ S M + +S + E L
Sbjct: 19 KRILAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRNKVFSTRTIPEERPLI 78
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS-GSGLLQRANL 370
+Q CGN+P ++ K ++ D VDVNLGCP + I K+G GS L + NL
Sbjct: 79 -IQFCGNDPEIMLKAAKIAAPYC--DAVDVNLGCP-QGIAKKGKYGSFLQENWNL 129
>TAIR|locus:2155528 [details] [associations]
symbol:AT5G67220 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0006808
"regulation of nitrogen utilization" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:CP002688 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AB020742
HOGENOM:HOG000203649 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 UniGene:At.66656 UniGene:At.9615 EMBL:AY049299
EMBL:AY102157 IPI:IPI00528780 RefSeq:NP_201523.1
ProteinModelPortal:Q9FH91 SMR:Q9FH91 STRING:Q9FH91 PRIDE:Q9FH91
EnsemblPlants:AT5G67220.1 GeneID:836857 KEGG:ath:AT5G67220
TAIR:At5g67220 InParanoid:Q9FH91 OMA:VERAWAH PhylomeDB:Q9FH91
ProtClustDB:CLSN2686916 Genevestigator:Q9FH91 Uniprot:Q9FH91
Length = 423
Score = 161 (61.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 39/127 (30%), Positives = 75/127 (59%)
Query: 370 LFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQS 428
LF VQ C N+P L + + +E D+VD+NLGCP + I ++G+ G+ L+ +++S
Sbjct: 145 LF-VQFCANDPDTLLEAAKRVEPYC--DYVDINLGCP-QRIARRGNYGAFLMDNLPLVKS 200
Query: 429 VITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ--A 486
++ + + ++P++ K R + ++ + + D G SL+ +HGRTR+++ K+ A
Sbjct: 201 LVEKLAQNLNVPVSCKIRIFPNLEDTL--KYAKMLEDAGCSLLAVHGRTRDEKDGKKFRA 258
Query: 487 DWDYIEK 493
DW I++
Sbjct: 259 DWSAIKE 265
Score = 146 (56.5 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 41/115 (35%), Positives = 61/115 (53%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMA---VATELLKSSPQEWALIKRHESEDLF 316
K ++P+ LPFR LC+K+GA + M + TE K QE+ K E LF
Sbjct: 89 KYIVAPMVDNSELPFRLLCQKYGAQAAYTPMLHSRIFTETEKYRNQEFTTCK--EDRPLF 146
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS-GSGLLQRANL 370
VQ C N+P L + + +E D+VD+NLGCP + I ++G+ G+ L+ L
Sbjct: 147 -VQFCANDPDTLLEAAKRVEPYC--DYVDINLGCP-QRIARRGNYGAFLMDNLPL 197
Score = 102 (41.0 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 514 DWGASLITLHGRTREQRYTKQ--ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKS 571
D G SL+ +HGRTR+++ K+ ADW I++ P+ NG++ ED +K++
Sbjct: 235 DAGCSLLAVHGRTRDEKDGKKFRADWSAIKEVKNAMR-IPVLANGNVRCIEDVDNCIKET 293
Query: 572 PSISGVMIGRGALIKPWIF 590
+ GV+ L P F
Sbjct: 294 -GVEGVLSAETLLENPAAF 311
>FB|FBgn0031238 [details] [associations]
symbol:CG3645 species:7227 "Drosophila melanogaster"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
KO:K05542 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AY051946 EMBL:BT124833
RefSeq:NP_608507.1 RefSeq:NP_722619.1 UniGene:Dm.4432 SMR:Q9VPM1
IntAct:Q9VPM1 MINT:MINT-325917 STRING:Q9VPM1
EnsemblMetazoa:FBtr0078140 EnsemblMetazoa:FBtr0078141 GeneID:33190
KEGG:dme:Dmel_CG3645 UCSC:CG3645-RA FlyBase:FBgn0031238
InParanoid:Q9VPM1 OrthoDB:EOG41VHJ8 GenomeRNAi:33190 NextBio:782335
Uniprot:Q9VPM1
Length = 505
Score = 167 (63.8 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 42/127 (33%), Positives = 67/127 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQSVIT 431
+Q CGN+ + L ++ D VD+NLGCP + I K+G GS L +L +++
Sbjct: 87 IQFCGNDAQQILDAALLAQDHC--DAVDINLGCP-QAIAKRGHYGSFLQDEWELLTEIVS 143
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
++ ++P+T K R I +D + G L+T+HGRTREQ+ T A+W+
Sbjct: 144 TLHAKLAVPVTCKIR--IFEDLEKTIRYAKMLEAAGCQLLTVHGRTREQKGPLTGVANWN 201
Query: 490 YIEKCAQ 496
YI+ Q
Sbjct: 202 YIKNVRQ 208
Score = 132 (51.5 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRTREQ+ T A+W+YI+ Q P+ NG+IL+ +D L ++
Sbjct: 177 GCQLLTVHGRTREQKGPLTGVANWNYIKNVRQHIK-IPMLANGNILALDDVHRCLTET-G 234
Query: 574 ISGVMIGRGALIKPWIFQEI 593
+ GVM G L P IF+ +
Sbjct: 235 VDGVMSAEGNLHNPAIFKGV 254
Score = 118 (46.6 bits), Expect = 8.5e-13, Sum P(2) = 8.5e-13
Identities = 34/106 (32%), Positives = 54/106 (50%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ--EWALIKRHESEDLFGVQL 320
++P+ L +R LC+++GA++ S M A L + P+ + AL E L +Q
Sbjct: 32 VAPMVDQSELAWRMLCRRYGAELCYSPMYHAN-LFATDPKYRKDALQTCPEDRPLI-IQF 89
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
CGN+ + L ++ D VD+NLGCP + I K+G LQ
Sbjct: 90 CGNDAQQILDAALLAQDHC--DAVDINLGCP-QAIAKRGHYGSFLQ 132
>DICTYBASE|DDB_G0278803 [details] [associations]
symbol:dus1l "tRNA-dihydrouridine synthase 1-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0278803 GO:GO:0005634 Gene3D:3.20.20.70
GenomeReviews:CM000152_GR GO:GO:0050660 EMBL:AAFI02000024
eggNOG:COG0042 KO:K05542 GO:GO:0017150 PANTHER:PTHR11082
RefSeq:XP_641974.1 ProteinModelPortal:Q54XQ6 STRING:Q54XQ6
EnsemblProtists:DDB0238071 GeneID:8621706 KEGG:ddi:DDB_G0278803
OMA:QIARRGN Uniprot:Q54XQ6
Length = 435
Score = 159 (61.0 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 38/121 (31%), Positives = 65/121 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ CGN P + K + +E+ D +D+NLGCP + + GS LL + +I+ ++
Sbjct: 111 VQFCGNEPEWVVKAAKYIEDHC--DAIDLNLGCPQQIARRGNYGSFLLDKPHIILPIVQE 168
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ--ADWDY 490
+++ +PI K R + D+ I + ++ G L+T+HGRT+EQ+ A+W
Sbjct: 169 LHKHIKVPIFCKIRLLPNLDDTI--KLALQLQEAGCQLLTIHGRTKEQKGHNSGIANWKA 226
Query: 491 I 491
I
Sbjct: 227 I 227
Score = 127 (49.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 35/114 (30%), Positives = 58/114 (50%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELL--KSSPQE-WALIKRHESEDLF 316
K ++P+ L FR LC+K+GAD+ + M + K+ ++ W+ E L
Sbjct: 53 KKTVAPMVDHTFLAFRMLCRKYGADMVYTPMFHSKNFATCKTYRRDYWSTCP--EDRPLV 110
Query: 317 GVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VQ CGN P + K + +E+ D +D+NLGCP + + GS LL + ++
Sbjct: 111 -VQFCGNEPEWVVKAAKYIEDHC--DAIDLNLGCPQQIARRGNYGSFLLDKPHI 161
Score = 120 (47.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 511 KFRDWGASLITLHGRTREQRYTKQ--ADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESL 568
+ ++ G L+T+HGRT+EQ+ A+W I + S P+ NG ++ YED L
Sbjct: 196 QLQEAGCQLLTIHGRTKEQKGHNSGIANWKAIRTIREQLS-IPVIANGSVVQYEDIDRCL 254
Query: 569 KKSPSISGVMIGRGALIKPWIFQEIK 594
+++ + GVM G L P F +K
Sbjct: 255 EETGA-DGVMSAEGILANPSFFSGLK 279
>POMBASE|SPCC777.15 [details] [associations]
symbol:SPCC777.15 "tRNA dihydrouridine synthase Dus4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005739
"mitochondrion" evidence=IDA] [GO:0006400 "tRNA modification"
evidence=ISO] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISO] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
PomBase:SPCC777.15 GO:GO:0005739 EMBL:CU329672
GenomeReviews:CU329672_GR Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 PANTHER:PTHR11082
KO:K05545 OMA:AGPMVRY PIR:T11721 RefSeq:NP_588262.1
ProteinModelPortal:O74553 STRING:O74553 EnsemblFungi:SPCC777.15.1
GeneID:2538996 KEGG:spo:SPCC777.15 OrthoDB:EOG4PZNGJ
NextBio:20800171 Uniprot:O74553
Length = 326
Score = 144 (55.7 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 45/162 (27%), Positives = 73/162 (45%)
Query: 339 MAVDFVDVNLGCPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDF 398
+A +F+ G +F S +LQ FGV ++P +L K QL+ VD
Sbjct: 53 LAKEFLHPK-GRYFDFSTNDADASLILQ----FGV----DDPVILEKAAQLVGPY--VDG 101
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+ +N GCP + ++G GS LL + ++ + + + I KD N +
Sbjct: 102 IGINCGCPQTWAIQEGIGSALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNKTRH 161
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK---CAQL 497
M GA +IT+HGRTR+ R + + D I + C Q+
Sbjct: 162 LMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIREVRPCVQI 203
Score = 123 (48.4 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 32/108 (29%), Positives = 50/108 (46%)
Query: 499 SRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI 558
++D N + M GA +IT+HGRTR+ R + + D I + + C P+ NGD+
Sbjct: 153 AKDLNKTRHLMQVIEKSGADIITVHGRTRQDRSSFPVNLDAIRE-VRPCVQIPVVANGDV 211
Query: 559 LSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVW 606
S E + K G+M RG L P +F +E + +W
Sbjct: 212 KSLRKGLE-IAKYTETQGIMSARGLLENPALFAGYEETPWGCVERFLW 258
Score = 118 (46.6 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ LPFR+L + + DI + M +A E L + + L +Q +
Sbjct: 25 APMVRYSKLPFRQLVRDYNTDIVYTPMILAKEFLHPKGRYFDFSTNDADASLI-LQFGVD 83
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
+P +L K QL+ VD + +N GCP + ++G GS LL
Sbjct: 84 DPVILEKAAQLVGPY--VDGIGINCGCPQTWAIQEGIGSALL 123
>UNIPROTKB|E2RKU2 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AAEX03004122 RefSeq:XP_546866.3
ProteinModelPortal:E2RKU2 Ensembl:ENSCAFT00000032371 GeneID:489746
KEGG:cfa:489746 NextBio:20862882 Uniprot:E2RKU2
Length = 493
Score = 123 (48.4 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP E+ K G G+ LL + ++ +++ + + P+T K R ++ + +
Sbjct: 110 IDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGIRRPVTCKIRILPSLEDTL--S 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD---NNIIHNFMPKFRD 514
+ + G + +T+HGR RE+R + I+ A+ S N H+ + K+ D
Sbjct: 168 LVKRIERTGIAAVTVHGRKREERPQHPVSCEAIKAIAETVSIPVIANGGSHDHIQKYLD 226
Score = 118 (46.6 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 40/124 (32%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
E + + E E V Q+ ++ +L+E +A +DVN+GCP E+ K G G
Sbjct: 70 ERVVFRTCEREQSRVVFQMGTSDADRALAVAKLVENDVAG--IDVNMGCPKEYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 94 (38.1 bits), Expect = 8.2e-09, Sum P(2) = 8.2e-09
Identities = 28/84 (33%), Positives = 43/84 (51%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESLKKS 571
G + +T+HGR RE+R + I+ A+ S P+ NG I Y D E +++
Sbjct: 176 GIAAVTVHGRKREERPQHPVSCEAIKAIAETVS-IPVIANGGSHDHIQKYLDI-EDFRQA 233
Query: 572 PSISGVMIGRGALIKPWIFQEIKE 595
+ S VM+ R A+ P IF +KE
Sbjct: 234 TAASSVMVARAAMWNPSIF--LKE 255
>CGD|CAL0003746 [details] [associations]
symbol:orf19.966 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
CGD:CAL0003746 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000063
EMBL:AACQ01000062 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 RefSeq:XP_716804.1
RefSeq:XP_716864.1 ProteinModelPortal:Q5A4Y0 STRING:Q5A4Y0
GeneID:3641524 GeneID:3641580 KEGG:cal:CaO19.8581
KEGG:cal:CaO19.966 Uniprot:Q5A4Y0
Length = 339
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 33/120 (27%), Positives = 61/120 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ NN K +++ VD + +N GCPI+ ++G G+ L+ +++ +I
Sbjct: 85 VQVGVNNVDDFMKFIEMIHP--FVDGIGINCGCPIKEQVREGIGAALMSDPDLVAELIKT 142
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ I + T+ IH+D N +F+ K + G +T+HGRT+ R + + D I+
Sbjct: 143 AKDKYGDSICIDTKIRIHRDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLDAIK 202
Score = 119 (46.9 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 262 YLS-PLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQL 320
Y++ P+ LPFR LC+ + DI + M +A E +++ ++S+ VQ+
Sbjct: 28 YIAGPMVRYSKLPFRELCRFYDVDIVYTPMILAREFVRNEVARSTDFTTNDSDKCVIVQV 87
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
NN K +++ VD + +N GCPI+ ++G G+ L+ +L
Sbjct: 88 GVNNVDDFMKFIEMIHP--FVDGIGINCGCPIKEQVREGIGAALMSDPDL 135
Score = 115 (45.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 500 RDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDIL 559
RD N +F+ K + G +T+HGRT+ R + + D I+ + + P+ NGD
Sbjct: 161 RDINQTIDFVNKVVEAGTDTLTVHGRTKNTRSSVPVNLDAIKIIRENVTTIPVIANGDCF 220
Query: 560 SYEDYTESLKKSPSISGVMIGRGALIKPWIF 590
+ D+ + + + GVM RG L P +F
Sbjct: 221 TLTDF-QKIVDYTGVDGVMSARGVLANPALF 250
>SGD|S000004397 [details] [associations]
symbol:DUS4 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA;ISS] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=ISS;IMP] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000004397 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006945
EMBL:U19729 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 OrthoDB:EOG4PZNGJ EMBL:AY558586
PIR:S55961 RefSeq:NP_013509.1 ProteinModelPortal:Q06063 SMR:Q06063
IntAct:Q06063 STRING:Q06063 PaxDb:Q06063 EnsemblFungi:YLR405W
GeneID:851121 KEGG:sce:YLR405W CYGD:YLR405w
BioCyc:MetaCyc:MONOMER-16679 NextBio:967845 Genevestigator:Q06063
GermOnline:YLR405W Uniprot:Q06063
Length = 367
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ+ NN L K +++ D + +N GCPI+ ++G G L+ +++L S++
Sbjct: 98 VQVGVNNVADLLKFVEMVAPYC--DGIGINCGCPIKEQIREGIGCALIYNSDLLCSMVHA 155
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + + ++T+ IH+ + K D G IT+HGRTR R ++ A+ D I+
Sbjct: 156 VKDKYGDKLRIETKIRIHEALDETVELCRKLCDAGVDWITIHGRTRRTRSSQPANLDAIK 215
Query: 493 KCAQLCSRDNNI 504
+ S D N+
Sbjct: 216 YIIENIS-DKNV 226
Score = 124 (48.7 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 29/106 (27%), Positives = 54/106 (50%)
Query: 265 PLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNN 324
P+ LPFR+LC+++ DI S M +A E +++ + + + + VQ+ NN
Sbjct: 45 PMVRYSKLPFRQLCREYNVDIVYSPMILAREYVRNEHARISDLSTNNEDTPLIVQVGVNN 104
Query: 325 PYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
L K +++ D + +N GCPI+ ++G G L+ ++L
Sbjct: 105 VADLLKFVEMVAPYC--DGIGINCGCPIKEQIREGIGCALIYNSDL 148
Score = 109 (43.4 bits), Expect = 1.9e-11, Sum P(2) = 1.9e-11
Identities = 30/82 (36%), Positives = 39/82 (47%)
Query: 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP--APLYGNGDILSYEDYTESL 568
K D G IT+HGRTR R ++ A+ D I+ + S P+ NGD D E +
Sbjct: 185 KLCDAGVDWITIHGRTRRTRSSQPANLDAIKYIIENISDKNVPVIANGDCFKLSDL-ERI 243
Query: 569 KKSPSISGVMIGRGALIKPWIF 590
K GVM RG L P +F
Sbjct: 244 TKYTGAHGVMAVRGLLSNPALF 265
>UNIPROTKB|I3LES5 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 KO:K05543 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:FP565347 RefSeq:XP_003355825.1
Ensembl:ENSSSCT00000028203 GeneID:100621573 KEGG:ssc:100621573
Uniprot:I3LES5
Length = 493
Score = 122 (48.0 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP E+ K G G+ LL + ++ +++ + + + P+T K R ++ + +
Sbjct: 110 IDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRLLPSLEDTL--S 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRD---NNIIHNFMPKFRD 514
+ + G + I +HGR RE+R + I+ A+ S N H+ + K+ D
Sbjct: 168 LVKRIERTGIAAIAVHGRKREERPQHPVSCEAIKAIAETLSIPVIANGGSHDHIQKYLD 226
Score = 114 (45.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 39/124 (31%), Positives = 59/124 (47%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP E+ K G G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDAERALAVAKLVENDVAG--IDVNMGCPKEYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 89 (36.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESLKKS 571
G + I +HGR RE+R + I+ A+ S P+ NG I Y D E +++
Sbjct: 176 GIAAIAVHGRKREERPQHPVSCEAIKAIAETLS-IPVIANGGSHDHIQKYLDI-EDFRQA 233
Query: 572 PSISGVMIGRGALIKPWIFQEIKE 595
+ S VM+ R A+ P +F +KE
Sbjct: 234 TAASSVMVARAAMWNPSVF--LKE 255
>UNIPROTKB|E2RRJ8 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AAEX03011212 RefSeq:XP_540383.2
Ensembl:ENSCAFT00000006298 GeneID:483264 KEGG:cfa:483264
Uniprot:E2RRJ8
Length = 317
Score = 118 (46.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ N+ +L+ +++ + +D+N GCP + +G G+ L+ + +++ ++
Sbjct: 86 VQFAANDARLLSDAARIVCPY--ANGIDINCGCPQRWAMAEGYGACLINKPELVRDMVKQ 143
Query: 433 M-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ N+V + +V + IH D + K G S IT+HGRT E+R+
Sbjct: 144 VRNQVENPRFSVSIKIRIHDDLTRTIDLCRKAEATGVSWITVHGRTVEERH 194
Score = 112 (44.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 31/93 (33%), Positives = 47/93 (50%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT E+R+ + ++ I+ + S P+ NGDI S ++ E++
Sbjct: 179 GVSWITVHGRTVEERH-QPVHYEAIKIIKENMS-IPVIANGDIRSLKE-AENVWHITGTD 235
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM+ RG L P +F E L +W W
Sbjct: 236 GVMVARGLLANPAMFAGYNETPL----QCIWDW 264
Score = 106 (42.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 25/107 (23%), Positives = 52/107 (48%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+G D+ + M VA + ++S + ++ + VQ N
Sbjct: 32 APMVRYSKLAFRTLVRKYGCDLCYTPMIVAADFVRSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ +++ + +D+N GCP + +G G+ L+ + L
Sbjct: 92 DARLLSDAARIVCPY--ANGIDINCGCPQRWAMAEGYGACLINKPEL 136
>TAIR|locus:2114713 [details] [associations]
symbol:AT3G49640 species:3702 "Arabidopsis thaliana"
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006808 "regulation of nitrogen
utilization" evidence=ISS] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
EMBL:CP002686 Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 KO:K05543 OMA:KEMIMHY
IPI:IPI00548775 RefSeq:NP_190533.3 UniGene:At.74022
ProteinModelPortal:F4IY04 SMR:F4IY04 PRIDE:F4IY04
EnsemblPlants:AT3G49640.1 GeneID:824126 KEGG:ath:AT3G49640
Uniprot:F4IY04
Length = 329
Score = 119 (46.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 39/131 (29%), Positives = 62/131 (47%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLK--------SSPQEWA-- 305
D+Q KL L+P+ VG L FR L ++GADIT E + +L+K S E+
Sbjct: 2 DYQNKLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEK 61
Query: 306 -----LIKRHESEDLFGVQLCGNNPYVLT-KCTQLLEEQMAVDFVDVNLGCPIEFIYKQG 359
+ + E V G + V K ++++ +A +D+N+GCP F + G
Sbjct: 62 GTDNVVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVAT--IDINMGCPKAFSIQGG 119
Query: 360 SGSGLLQRANL 370
G+ LL + L
Sbjct: 120 MGAALLSKPEL 130
Score = 110 (43.8 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + +HGR R A WD I S P+ NGD+L Y+D++ +K + +
Sbjct: 170 GVPALAVHGRKIADRPRDPAKWDEIADVVAALS-IPVIANGDVLEYDDFSR-IKTATGAA 227
Query: 576 GVMIGRGALIKPWIF 590
VM+ RGA+ IF
Sbjct: 228 SVMVARGAMWNASIF 242
>UNIPROTKB|O95620 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine(20a/20b) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CH471070 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:U62767 EMBL:AK297195
EMBL:BC111774 IPI:IPI00021410 IPI:IPI00783809 RefSeq:NP_001257348.1
RefSeq:NP_853559.1 UniGene:Hs.97627 ProteinModelPortal:O95620
SMR:O95620 STRING:O95620 PaxDb:O95620 PRIDE:O95620
Ensembl:ENST00000265720 Ensembl:ENST00000402620 GeneID:11062
KEGG:hsa:11062 UCSC:uc003veh.3 CTD:11062 GeneCards:GC07P107203
HGNC:HGNC:21517 HPA:HPA044301 neXtProt:NX_O95620
PharmGKB:PA142671939 HOVERGEN:HBG053313 InParanoid:O95620 KO:K05545
OMA:AGPMVRY OrthoDB:EOG4ZCT4T PhylomeDB:O95620 GenomeRNAi:11062
NextBio:42037 ArrayExpress:O95620 Bgee:O95620 CleanEx:HS_DUS4L
Genevestigator:O95620 GermOnline:ENSG00000105865 Uniprot:O95620
Length = 317
Score = 126 (49.4 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 32/121 (26%), Positives = 62/121 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ N+ +L+ +++ + +D+N GCP + +G G+ L+ + ++Q ++
Sbjct: 86 VQFAANDARLLSDAARIVCPY--ANGIDINCGCPQRWAMAEGYGACLINKPELVQDMVKQ 143
Query: 433 M-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYI 491
+ N+V + +V + IH D + K G S IT+HGRT E+R+ + +D I
Sbjct: 144 VRNQVETPGFSVSIKIRIHDDLKRTVDLCQKAEATGVSWITVHGRTAEERH-QPVHYDSI 202
Query: 492 E 492
+
Sbjct: 203 K 203
Score = 122 (48.0 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT E+R+ + +D I+ + S P+ NGDI S ++ E++ +
Sbjct: 179 GVSWITVHGRTAEERH-QPVHYDSIKIIKENMS-IPVIANGDIRSLKE-AENVWRITGTD 235
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM+ RG L P +F +E L +W W
Sbjct: 236 GVMVARGLLANPAMFAGYEETPL----KCIWDW 264
Score = 103 (41.3 bits), Expect = 7.8e-11, Sum P(2) = 7.8e-11
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M VA + +KS + ++ + VQ N
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVKSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ +++ + +D+N GCP + +G G+ L+ + L
Sbjct: 92 DARLLSDAARIVCPY--ANGIDINCGCPQRWAMAEGYGACLINKPEL 136
>ZFIN|ZDB-GENE-100922-233 [details] [associations]
symbol:dus2l "dihydrouridine synthase 2-like, SMM1
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720
ZFIN:ZDB-GENE-100922-233 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 KO:K05543
GeneTree:ENSGT00550000075019 EMBL:CU855766 EMBL:CU855937
IPI:IPI00902127 RefSeq:XP_001342694.3 Ensembl:ENSDART00000110221
Ensembl:ENSDART00000139002 GeneID:100003049 KEGG:dre:100003049
NextBio:20785702 Uniprot:E7F220
Length = 504
Score = 146 (56.5 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 388 QLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRT 447
+L+E + VDVN+GCP E+ K G GS LL +++++T + + S P+T K R
Sbjct: 106 KLVENDVAA--VDVNMGCPKEYSTKGGMGSALLSDPEKIEAILTTLVKGISKPVTCKIRI 163
Query: 448 GIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
++ + N + + G + I +HGR +++R DYI+ AQ S
Sbjct: 164 LSTIEDTV--NLVKRIEKTGVAAIAVHGRMKDERPRHPVHCDYIQAVAQSVS 213
Score = 116 (45.9 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 29/90 (32%), Positives = 48/90 (53%)
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG---DILS-YE 562
N + + G + I +HGR +++R DYI+ AQ S P+ NG DI+ +E
Sbjct: 172 NLVKRIEKTGVAAIAVHGRMKDERPRHPVHCDYIQAVAQSVS-VPVIANGGSSDIVKEFE 230
Query: 563 DYTESLKKSPSISGVMIGRGALIKPWIFQE 592
D E+ ++S S VM+ R A+ P +F++
Sbjct: 231 DI-ETFRESTGASSVMLARAAMWNPSVFRQ 259
Score = 115 (45.5 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 42/121 (34%), Positives = 58/121 (47%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADIT-CSE-----MA----VATELLKS----SPQEWA 305
K L+P+ VG LP R L +GADI C E MA V ++L++ +P E
Sbjct: 18 KNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMAQCERVENDVLQTIDFVAPDERV 77
Query: 306 LIKRHESEDLFGVQLCGN-NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGL 364
+ + E V G +P +L+E +A VDVN+GCP E+ K G GS L
Sbjct: 78 MFRTCSKESGRVVFQMGTADPERALAVAKLVENDVAA--VDVNMGCPKEYSTKGGMGSAL 135
Query: 365 L 365
L
Sbjct: 136 L 136
>UNIPROTKB|E1C4F6 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 OMA:YHNKLIL
GeneTree:ENSGT00550000075019 EMBL:AADN02038196 IPI:IPI00588517
ProteinModelPortal:E1C4F6 Ensembl:ENSGALT00000005388 Uniprot:E1C4F6
Length = 493
Score = 116 (45.9 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 31/122 (25%), Positives = 61/122 (50%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+D+N+GCP E+ K G G+ LL + ++S++T + + P+T K R ++ + +
Sbjct: 109 IDINMGCPKEYSTKGGMGAALLSDPDKIESILTTLVKGICKPVTCKIRILPSVEDTV--D 166
Query: 459 FMPKFRDWGASLITLHGRT---REQRYTKQADWDYIEKCAQLCSRD---NNIIHNFMPKF 512
+ + G + I +HGR +E+R D I+ ++ S N H+F+ ++
Sbjct: 167 LVKRIEKTGIAAIAVHGRLERKKEERPQHPVHCDVIKAISEAVSIPVIANGGSHDFIKEY 226
Query: 513 RD 514
D
Sbjct: 227 GD 228
Score = 113 (44.8 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 38/124 (30%), Positives = 61/124 (49%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
++GK L+P+ VG LP R L +GADI C E+ V E+L++ +P
Sbjct: 9 FRGKNILAPMVRVGTLPMRLLALDYGADIVYCEELIDIKMMQCKRVVNEILETVDFVAPN 68
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
E + + E E + Q+ + +L+E +A +D+N+GCP E+ K G G
Sbjct: 69 ERVVFRTCERERHRVIFQMGSADAGRALAVAKLVESDVAG--IDINMGCPKEYSTKGGMG 126
Query: 362 SGLL 365
+ LL
Sbjct: 127 AALL 130
Score = 82 (33.9 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 27/84 (32%), Positives = 42/84 (50%)
Query: 516 GASLITLHGRT---REQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESL 568
G + I +HGR +E+R D I+ ++ S P+ NG I Y D E+
Sbjct: 175 GIAAIAVHGRLERKKEERPQHPVHCDVIKAISEAVS-IPVIANGGSHDFIKEYGDI-ETF 232
Query: 569 KKSPSISGVMIGRGALIKPWIFQE 592
+K+ + S VMI R A+ P IF++
Sbjct: 233 QKATAASSVMIARAAMWNPSIFRK 256
>ZFIN|ZDB-GENE-040801-233 [details] [associations]
symbol:dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
ZFIN:ZDB-GENE-040801-233 Gene3D:3.20.20.70 GO:GO:0050660
HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
CTD:11062 HOVERGEN:HBG053313 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:BX072538 IPI:IPI00487005
RefSeq:NP_001003490.2 UniGene:Dr.89736 Ensembl:ENSDART00000130623
GeneID:445096 KEGG:dre:445096 InParanoid:Q5RIX6 NextBio:20831860
Uniprot:Q5RIX6
Length = 307
Score = 121 (47.7 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 33/93 (35%), Positives = 47/93 (50%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT +R+ + +D I+ S P+ NGDI S +D E++ + +
Sbjct: 168 GVSYITVHGRTAIERH-QPVHYDTIKTIKDSLS-IPVIANGDIKSMQD-VEAVCELTGVD 224
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM RG L P +F +E L VW W
Sbjct: 225 GVMSARGLLSNPAMFSGFEETPL----QCVWDW 253
Score = 118 (46.6 bits), Expect = 0.00043, P = 0.00043
Identities = 28/97 (28%), Positives = 51/97 (52%)
Query: 397 DFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM-NEVSSLPITVKTRTGIHKDNNI 455
D VD+N GCP + +G G+ L+ + +++ ++ + N++ + V + IHKD
Sbjct: 97 DGVDLNCGCPQRWAMSEGYGACLINKPELVKDMVRHVRNQIDNPNYAVSIKIRIHKDVRQ 156
Query: 456 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ K G S IT+HGRT +R+ + +D I+
Sbjct: 157 TVDLCQKVEAAGVSYITVHGRTAIERH-QPVHYDTIK 192
Score = 98 (39.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M +A + ++S+ + ++++ VQ
Sbjct: 21 APMVRYSKLAFRTLVRKYDCDVCFTPMIIAADFMRSAKARDSEFTTNKNDRPLIVQFAAK 80
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ L ++ D VD+N GCP + +G G+ L+ + L
Sbjct: 81 DAQTLADAACVVSPFS--DGVDLNCGCPQRWAMSEGYGACLINKPEL 125
>MGI|MGI:1919166 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 MGI:MGI:1919166 Gene3D:3.20.20.70
GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313
KO:K05545 OrthoDB:EOG4ZCT4T EMBL:AK010138 EMBL:BC109351
IPI:IPI00109359 RefSeq:NP_082278.1 UniGene:Mm.62979
ProteinModelPortal:Q32M08 SMR:Q32M08 STRING:Q32M08 PRIDE:Q32M08
Ensembl:ENSMUST00000020977 GeneID:71916 KEGG:mmu:71916
UCSC:uc007nhr.1 GeneTree:ENSGT00550000074907 InParanoid:Q32M08
NextBio:334944 Bgee:Q32M08 CleanEx:MM_DUS4L Genevestigator:Q32M08
GermOnline:ENSMUSG00000020648 Uniprot:Q32M08
Length = 324
Score = 123 (48.4 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT E+R+ + +D I+ + S P+ NGDI S ++ E++ +
Sbjct: 179 GVSWITVHGRTVEERH-QPVHYDAIKMIKENVS-IPIVANGDIRSLKE-AENVWQMTGTD 235
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM+ RG L P +F +E L +W W
Sbjct: 236 GVMVARGLLANPAMFAGYEETPL----KCIWDW 264
Score = 96 (38.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M +A + ++S + ++ + VQ N
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIIAADFVRSIKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ L+ + +D+N GCP + G G+ L+ + L
Sbjct: 92 DARLLSDAALLVCPY--ANGIDINCGCPQRWAMADGYGACLINKPEL 136
>UNIPROTKB|D4A0T1 [details] [associations]
symbol:Dus4l "Protein Dus4l" species:10116 "Rattus
norvegicus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
RGD:1311445 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CH473947
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 CTD:11062 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 IPI:IPI00951041
RefSeq:NP_001129275.1 UniGene:Rn.41975 Ensembl:ENSRNOT00000068419
GeneID:366593 KEGG:rno:366593 NextBio:689691 Uniprot:D4A0T1
Length = 321
Score = 124 (48.7 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT E+R+ + +D I+ + S P+ NGDI S ++ E++ +
Sbjct: 179 GVSWITVHGRTVEERH-QPVHYDAIKMIKENVS-IPIVANGDIRSLKE-AENVWQMTGTD 235
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM+ RG L P +F +E L VW W
Sbjct: 236 GVMVARGLLANPAMFAGYEETPL----KCVWDW 264
Score = 94 (38.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M VA + ++S + ++ + VQ N
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ ++ + +D+N GCP + G G+ L+ + L
Sbjct: 92 DARLLSDAALIVCPYASG--IDINCGCPQRWAMADGYGACLINKPEL 136
>RGD|1311445 [details] [associations]
symbol:Dus4l "dihydrouridine synthase 4-like (S. cerevisiae)"
species:10116 "Rattus norvegicus" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 RGD:1311445 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
IPI:IPI00914747 ProteinModelPortal:D4A3L7
Ensembl:ENSRNOT00000011068 UCSC:RGD:1311445 ArrayExpress:D4A3L7
Uniprot:D4A3L7
Length = 324
Score = 124 (48.7 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 33/93 (35%), Positives = 49/93 (52%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGRT E+R+ + +D I+ + S P+ NGDI S ++ E++ +
Sbjct: 179 GVSWITVHGRTVEERH-QPVHYDAIKMIKENVS-IPIVANGDIRSLKE-AENVWQMTGTD 235
Query: 576 GVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKW 608
GVM+ RG L P +F +E L VW W
Sbjct: 236 GVMVARGLLANPAMFAGYEETPL----KCVWDW 264
Score = 94 (38.1 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M VA + ++S + ++ + VQ N
Sbjct: 32 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ ++ + +D+N GCP + G G+ L+ + L
Sbjct: 92 DARLLSDAALIVCPYASG--IDINCGCPQRWAMADGYGACLINKPEL 136
>UNIPROTKB|E1C6D2 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:AADN02029975 IPI:IPI00599742
ProteinModelPortal:E1C6D2 Ensembl:ENSGALT00000004402 Uniprot:E1C6D2
Length = 478
Score = 176 (67.0 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 65/235 (27%), Positives = 106/235 (45%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
NE S+PIT K R D + + G L+T+HGRT+EQ+ A W+
Sbjct: 135 LANEKLSVPITCKIRVFPEIDKTV--KYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWE 192
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
+I+ + S +P F + ++ E+ K + L +P
Sbjct: 193 HIQAVRKAVS---------IPVFANGNIQCLS----DVEECIRKTGVHGVMSAEGNLHNP 239
Query: 550 APLYGNGDIL--SYEDYTESLKKSPS-ISGVMIGRGALIKPW-----IFQEIKEK 596
A G ++ E+Y E ++K P +S V R L K W ++Q+++E+
Sbjct: 240 ALFEGRNPLVWEMAEEYLEIVQKYPCPLSYV---RAHLFKLWHHTLQVYQQLREE 291
Score = 44 (20.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 75 CYCP------FLKDSTLEQTCKYGEKCKFVHDKNV-FMKSKPEDISEQCYVFLQHGYC 125
CY P FL+D+ + YGE C V F + PE + Q + Q YC
Sbjct: 44 CYTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQFCANDPE-VFVQAALLAQD-YC 99
>POMBASE|SPBC1709.06 [details] [associations]
symbol:dus2 "tRNA dihydrouridine synthase Dus2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006400 "tRNA modification" evidence=ISO] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=ISO] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
PomBase:SPBC1709.06 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CU329671 GenomeReviews:CU329671_GR
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 KO:K05543 PIR:T39634
RefSeq:NP_595439.1 ProteinModelPortal:O74731 STRING:O74731
EnsemblFungi:SPBC1709.06.1 GeneID:2540200 KEGG:spo:SPBC1709.06
OMA:LVERICD OrthoDB:EOG4PG98M NextBio:20801332 Uniprot:O74731
Length = 479
Score = 147 (56.8 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 59/219 (26%), Positives = 101/219 (46%)
Query: 316 FGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ----RANLF 371
+G L P ++ K LL V+ + C I+F+ K S L + AN
Sbjct: 30 YGANLVWG-PEIVDKA--LLSGTPVERVVNDRINC-IDFV-KPPSNKVLFRVHPLEANRL 84
Query: 372 GVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
QL +P + + +L+ V +D+N GCP F G G+GLL+ + L S++
Sbjct: 85 IFQLGSASPELAVEAAKLVAND--VAGIDLNCGCPKHFSVHAGMGAGLLKNQDRLVSILD 142
Query: 432 CM-NEVSS---LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
+ NE+ + I+ K R K++ + + + D G IT+H RT R T+ AD
Sbjct: 143 ALVNEIGKPYKISISCKIRLLETKEDTL--KLVERICDTGVRAITVHCRTTPMRNTEPAD 200
Query: 488 WDYIEKCAQLC-SRDNNIIHNF-MPKFRDWGASLITLHG 524
Y+ + +C ++D +I+ N + + D G +I +G
Sbjct: 201 RSYLSEIVGVCRNKDVSILVNGDVLSYND-GLDVIEKYG 238
Score = 111 (44.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLC--SPAPLYGNGDILSYEDYTESLKKS 571
D G IT+H RT R T+ AD Y+ + +C + NGD+LSY D + ++K
Sbjct: 178 DTGVRAITVHCRTTPMRNTEPADRSYLSEIVGVCRNKDVSILVNGDVLSYNDGLDVIEKY 237
Query: 572 PSISGVMIGRGA 583
+ GV+I R A
Sbjct: 238 -GVDGVLIARAA 248
Score = 75 (31.5 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
++ K+ L+P+ +G LP R L ++GA++ V LL +P E
Sbjct: 5 NYSNKVCLAPMVRIGELPMRLLALRYGANLVWGPEIVDKALLSGTPVE 52
>UNIPROTKB|E1BWI8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AADN02029975
IPI:IPI00820914 ProteinModelPortal:E1BWI8
Ensembl:ENSGALT00000038896 NextBio:20820685 Uniprot:E1BWI8
Length = 486
Score = 176 (67.0 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 65/235 (27%), Positives = 106/235 (45%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
NE S+PIT K R D + + G L+T+HGRT+EQ+ A W+
Sbjct: 135 LANEKLSVPITCKIRVFPEIDKTV--KYAQMLEKAGCQLLTVHGRTKEQKGPLAGVASWE 192
Query: 490 YIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSP 549
+I+ + S +P F + ++ E+ K + L +P
Sbjct: 193 HIQAVRKAVS---------IPVFANGNIQCLS----DVEECIRKTGVHGVMSAEGNLHNP 239
Query: 550 APLYGNGDIL--SYEDYTESLKKSPS-ISGVMIGRGALIKPW-----IFQEIKEK 596
A G ++ E+Y E ++K P +S V R L K W ++Q+++E+
Sbjct: 240 ALFEGRNPLVWEMAEEYLEIVQKYPCPLSYV---RAHLFKLWHHTLQVYQQLREE 291
Score = 44 (20.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 75 CYCP------FLKDSTLEQTCKYGEKCKFVHDKNV-FMKSKPEDISEQCYVFLQHGYC 125
CY P FL+D+ + YGE C V F + PE + Q + Q YC
Sbjct: 44 CYTPMLHAQVFLRDANYRRENLYGEACPEDRPLIVQFCANDPE-VFVQAALLAQD-YC 99
>UNIPROTKB|F1NHN2 [details] [associations]
symbol:DUS4L "tRNA-dihydrouridine synthase" species:9031
"Gallus gallus" [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 OMA:AGPMVRY GeneTree:ENSGT00550000074907
EMBL:AC147596 IPI:IPI00813011 Ensembl:ENSGALT00000039460
Uniprot:F1NHN2
Length = 307
Score = 119 (46.9 bits), Expect = 0.00033, P = 0.00033
Identities = 34/125 (27%), Positives = 66/125 (52%)
Query: 377 GNNPYVL---TKCTQLL-EEQMVV----DFVDVNLGCPIEFIYKQGSGSGLLQRANILQS 428
G+NP ++ K Q+L + ++V D VD+N GCP + +G G+ L+ + +++
Sbjct: 68 GDNPLIVQFAAKEAQVLCDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPELVRD 127
Query: 429 VITCM-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQAD 487
++ + N++ + +V + IH+D + K G S IT+HGR E+R+ +
Sbjct: 128 MVRHVRNQIDNPRFSVSIKIRIHEDLKKTVDLCKKAEATGVSWITVHGRNIEERH-QPVH 186
Query: 488 WDYIE 492
+D I+
Sbjct: 187 YDAIK 191
Score = 110 (43.8 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +++G D+ + M VA + ++S+ + + ++ VQ
Sbjct: 20 APMVRYSKLAFRTLVRRYGCDLCYTPMVVAADFVRSAKARDSEFTTNRGDNPLIVQFAAK 79
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VL C L D VD+N GCP + +G G+ L+ + L
Sbjct: 80 EAQVL--CDAALLVCPFADGVDLNCGCPQRWAMAEGYGACLINKPEL 124
Score = 106 (42.4 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G S IT+HGR E+R+ + +D I K + P+ NGDI + +D E++
Sbjct: 167 GVSWITVHGRNIEERH-QPVHYDAI-KVIKESIHIPVVANGDIKTLKD-AENVHHLTGAD 223
Query: 576 GVMIGRGALIKPWIFQEIKEKKL 598
GVM+ RG L P +F +E L
Sbjct: 224 GVMVARGLLANPAMFAGYEETPL 246
>SGD|S000004545 [details] [associations]
symbol:DUS1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0006400 "tRNA modification" evidence=IMP;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0002943 "tRNA
dihydrouridine synthesis" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 SGD:S000004545
GO:GO:0005634 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:BK006946
EMBL:Z46373 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 PANTHER:PTHR11082 GeneTree:ENSGT00550000075089
OMA:RCQPYFR OrthoDB:EOG480N5B PIR:S48817 RefSeq:NP_013631.1
ProteinModelPortal:P53759 SMR:P53759 IntAct:P53759
MINT:MINT-4083769 STRING:P53759 PaxDb:P53759 PeptideAtlas:P53759
EnsemblFungi:YML080W GeneID:854895 KEGG:sce:YML080W CYGD:YML080w
BioCyc:MetaCyc:MONOMER-16676 NextBio:977861 Genevestigator:P53759
GermOnline:YML080W Uniprot:P53759
Length = 423
Score = 176 (67.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 44/123 (35%), Positives = 71/123 (57%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQSVIT 431
VQ C N+P L +L+E++ D VD+NLGCP + I K+G GS L++ +++ ++I
Sbjct: 91 VQFCANDPEYLLAAAKLVEDKC--DAVDLNLGCP-QGIAKKGHYGSFLMEEWDLIHNLIN 147
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQ--ADWD 489
+++ +P+T K R I D N+ D GA +T+HGR REQ+ K A+W+
Sbjct: 148 TLHKNLKVPVTAKIR--IFDDCEKSLNYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWE 205
Query: 490 YIE 492
I+
Sbjct: 206 TIK 208
Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 34/113 (30%), Positives = 60/113 (53%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQ----EWALIKRHESEDLFGV 318
++P+ L +R L +++GA + + M A +L +S + W+ + + V
Sbjct: 33 VAPMVDQSELAWRILSRRYGATLAYTPMLHA-KLFATSKKYREDNWSSLDGSSVDRPLVV 91
Query: 319 QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS-GSGLLQRANL 370
Q C N+P L +L+E++ D VD+NLGCP + I K+G GS L++ +L
Sbjct: 92 QFCANDPEYLLAAAKLVEDKC--DAVDLNLGCP-QGIAKKGHYGSFLMEEWDL 141
Score = 106 (42.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 32/99 (32%), Positives = 48/99 (48%)
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQ--ADWDYIEKCAQ-LCSPAPLYGNGDILSYED 563
N+ D GA +T+HGR REQ+ K A+W+ I+ L + NG+IL ED
Sbjct: 172 NYAKMVLDAGAQFLTVHGRVREQKGQKTGLANWETIKYLRDNLPKETVFFANGNILYPED 231
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIFQ--EIKEK-KLF 599
+ ++ + VM G L P +F + K K K+F
Sbjct: 232 ISRCMEHIGA-DAVMSAEGNLYNPGVFNVGQTKNKEKIF 269
Score = 38 (18.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 504 IIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 545
I+ F+P D ++L T++ + + + +Q +EK Q
Sbjct: 303 ILRPFLPHHTDIRSTLATMNAKATWEEWEEQVVKP-VEKVVQ 343
>UNIPROTKB|J3QQZ0 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578907 Uniprot:J3QQZ0
Length = 301
Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 102 (41.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I +D L+ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQDVERCLRDT-G 225
Query: 574 ISGVMIGRG 582
+ GVM G
Sbjct: 226 VQGVMSAGG 234
Score = 94 (38.1 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>UNIPROTKB|J3QLE4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000582529 Uniprot:J3QLE4
Length = 309
Score = 167 (63.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 117 (46.2 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I +D L+ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQDVERCLRDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 94 (38.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>UNIPROTKB|E2R9L8 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 CTD:64118 KO:K05542 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 RefSeq:XP_848227.1 ProteinModelPortal:E2R9L8
Ensembl:ENSCAFT00000009615 GeneID:475927 KEGG:cfa:475927
NextBio:20851671 Uniprot:E2R9L8
Length = 475
Score = 169 (64.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTV--KYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 112 (44.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGTASWEHI-KAVRKAVAIPVFANGNIQCLRDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 94 (38.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>RGD|708389 [details] [associations]
symbol:Pp3111 "PP3111 protein" species:10116 "Rattus norvegicus"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 RGD:708389 Gene3D:3.20.20.70
GO:GO:0050660 HOVERGEN:HBG061241 KO:K05542 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 EMBL:AF508021 EMBL:AY327509
EMBL:AY327510 IPI:IPI00203718 RefSeq:NP_742015.1 UniGene:Rn.179335
ProteinModelPortal:Q8K582 PRIDE:Q8K582 GeneID:246185
KEGG:rno:246185 CTD:246185 NextBio:623466 Genevestigator:Q8K582
Uniprot:Q8K582
Length = 438
Score = 167 (63.8 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 41/123 (33%), Positives = 64/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGRYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ A W+
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 112 (44.5 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ A W++I K + P++ NG+I +D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPMAGTASWEHI-KAVRKAVGIPVFANGNIRCLQDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 92 (37.4 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH---ESEDLFGVQ 319
++P+ L +R L ++ GA + + M A ++ + + E L VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLI-VQ 79
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 80 FCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGRYGAFLQ 123
>UNIPROTKB|J9NYR0 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 OMA:WEMAEEY GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 GeneTree:ENSGT00550000075089 EMBL:AAEX03006160
EMBL:AAEX03006161 Ensembl:ENSCAFT00000045880 Uniprot:J9NYR0
Length = 584
Score = 169 (64.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTV--KYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 112 (44.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGTASWEHI-KAVRKAVAIPVFANGNIQCLRDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 94 (38.1 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>UNIPROTKB|Q6P1R4 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC135056 EMBL:BC017081
EMBL:BC062566 EMBL:BC064918 IPI:IPI00335251 RefSeq:NP_071439.3
UniGene:Hs.514599 UniGene:Hs.741994 ProteinModelPortal:Q6P1R4
SMR:Q6P1R4 STRING:Q6P1R4 DMDM:74749069 PaxDb:Q6P1R4 PRIDE:Q6P1R4
DNASU:64118 Ensembl:ENST00000306796 Ensembl:ENST00000354321
GeneID:64118 KEGG:hsa:64118 UCSC:uc002kdq.3 CTD:64118
GeneCards:GC17M080015 H-InvDB:HIX0039074 HGNC:HGNC:30086
HPA:HPA023384 neXtProt:NX_Q6P1R4 PharmGKB:PA142671936
eggNOG:COG0042 HOGENOM:HOG000203649 HOVERGEN:HBG061241
InParanoid:Q6P1R4 KO:K05542 OMA:WEMAEEY OrthoDB:EOG4SN1NJ
GenomeRNAi:64118 NextBio:65992 ArrayExpress:Q6P1R4 Bgee:Q6P1R4
CleanEx:HS_DUS1L Genevestigator:Q6P1R4 GermOnline:ENSG00000169718
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 Uniprot:Q6P1R4
Length = 473
Score = 167 (63.8 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 41/123 (33%), Positives = 65/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQDEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAHEKLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 117 (46.2 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I +D L+ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQDVERCLRDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 94 (38.1 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 30/106 (28%), Positives = 51/106 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>MGI|MGI:1915980 [details] [associations]
symbol:Dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
MGI:MGI:1915980 Gene3D:3.20.20.70 GO:GO:0050660 CTD:64118
eggNOG:COG0042 HOVERGEN:HBG061241 KO:K05542 OrthoDB:EOG4SN1NJ
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AK004041
EMBL:AK088243 EMBL:BC019480 IPI:IPI00224714 RefSeq:NP_081100.2
UniGene:Mm.180622 ProteinModelPortal:Q8C2P3 SMR:Q8C2P3
STRING:Q8C2P3 PRIDE:Q8C2P3 Ensembl:ENSMUST00000167023 GeneID:68730
KEGG:mmu:68730 UCSC:uc007mur.1 GeneTree:ENSGT00550000075089
InParanoid:Q8C2P3 NextBio:327790 Bgee:Q8C2P3 CleanEx:MM_DUS1L
Genevestigator:Q8C2P3 GermOnline:ENSMUSG00000025155 Uniprot:Q8C2P3
Length = 475
Score = 167 (63.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 41/123 (33%), Positives = 64/123 (52%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +I
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMIL 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+E S+P+T K R D + + G L+T+HGRT+EQ+ A W+
Sbjct: 135 LAHERLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPMAGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 112 (44.5 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ A W++I K + P++ NG+I +D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPMAGTASWEHI-KAVRKAVGIPVFANGNIQCLQDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 92 (37.4 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH---ESEDLFGVQ 319
++P+ L +R L ++ GA + + M A ++ + + E L VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLI-VQ 79
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 80 FCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>DICTYBASE|DDB_G0277081 [details] [associations]
symbol:DDB_G0277081 "tRNA-dihydrouridine synthase A"
species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
dictyBase:DDB_G0277081 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000019 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 RefSeq:XP_642936.1 ProteinModelPortal:Q86L21
EnsemblProtists:DDB0217898 GeneID:8620805 KEGG:ddi:DDB_G0277081
InParanoid:Q86L21 OMA:PIVAQFF Uniprot:Q86L21
Length = 392
Score = 138 (53.6 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIY--KQGSGSGLLQRANILQSVIT 431
Q GN P + ++ E + D VD+N+GCP + KQ SG+ L+ ++ + ++
Sbjct: 73 QFFGNKPEYFYESAKIANE-LGYDGVDINMGCPSRKVLSPKQASGAALITNPSLAKEIVK 131
Query: 432 CMNEVSSL--PITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
E + P++VKTR G K I ++P + + +TLH RT+++ A W+
Sbjct: 132 ITKEALNFEKPVSVKTRIGFDKIE--IDEWIPLILESEPACLTLHLRTKKELSLVPAHWE 189
Query: 490 Y 490
+
Sbjct: 190 H 190
Score = 125 (49.1 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 42/136 (30%), Positives = 71/136 (52%)
Query: 467 GASLITLHGRTRE-QRYTKQADWDYIEKCAQLCSR---DNNIIHNFMPKFRDWGASLITL 522
GA+LIT +E + TK+A ++ EK + +R D I ++P + + +TL
Sbjct: 116 GAALITNPSLAKEIVKITKEA-LNF-EKPVSVKTRIGFDKIEIDEWIPLILESEPACLTL 173
Query: 523 HGRTREQRYTKQADWDY--IEKCAQL---CSPAPLY-GNGDILSYEDYTESLKKSPSISG 576
H RT+++ A W++ +++ +L SP L GNGD+ +YE + + + I G
Sbjct: 174 HLRTKKELSLVPAHWEHQVLDRVVELRNQISPNTLLVGNGDVETYEQGIDYINQF-GIDG 232
Query: 577 VMIGRGALIKPWIFQE 592
VMIGR PW+F +
Sbjct: 233 VMIGRAVYGNPWLFNK 248
Score = 85 (35.0 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 33/115 (28%), Positives = 54/115 (46%)
Query: 263 LSPLTTVGNLPFRRLCKK-WGA-DITCSEMAVATELLKSSPQEWALIKR---HESEDLFG 317
L+P+ V ++ FR L G ++ +E A L ++ +E ALI + E
Sbjct: 15 LAPMADVTDISFRFLLANCMGKPNVIFNEFVSADGLARN--RE-ALIDKLGYSTQEKPIV 71
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIY--KQGSGSGLLQRANL 370
Q GN P + ++ E + D VD+N+GCP + KQ SG+ L+ +L
Sbjct: 72 AQFFGNKPEYFYESAKIANE-LGYDGVDINMGCPSRKVLSPKQASGAALITNPSL 125
>UNIPROTKB|E1BH75 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
IPI:IPI00906369 Ensembl:ENSBTAT00000057257 OMA:RMSILAW
Uniprot:E1BH75
Length = 270
Score = 158 (60.7 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 40/123 (32%), Positives = 62/123 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ +
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMSI 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
SS P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 LAWTTSSXPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 98 (39.6 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 23/74 (31%), Positives = 39/74 (52%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGTASWEHI-KAVRKAVTIPVFANGNIQCLRDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKP 587
+ GVM A+ P
Sbjct: 226 VQGVMSAGEAVPSP 239
Score = 91 (37.1 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH---ESEDLFGVQ 319
++P+ L +R L ++ GA + + M A ++ + + E L VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLI-VQ 79
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 80 FCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>UNIPROTKB|J3QKP9 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000578176 Uniprot:J3QKP9
Length = 247
Score = 117 (46.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I +D L+ +
Sbjct: 151 GCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQDVERCLRDT-G 208
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 209 VQGVMSAEGNLHNPALFE 226
Score = 83 (34.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 27/98 (27%), Positives = 48/98 (48%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FGVQL 320
++P+ L +R L ++ GA + + M A ++ + ++ L ED VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAQLCYTPMLHAQVFVRDANYRKENLYCEVCPEDRPLIVQF 80
Query: 321 CGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQ 358
C N+P V + L ++ D +D+NLGCP + I K+
Sbjct: 81 CANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKR 115
Score = 81 (33.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWDYI 491
+E S+P+T K R D + + G L+T+HGRT+EQ+ + A W++I
Sbjct: 120 HEKLSVPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHI 177
Query: 492 E 492
+
Sbjct: 178 K 178
Score = 74 (31.1 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQ 413
VQ C N+P V + L ++ D +D+NLGCP + I K+
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKR 115
>DICTYBASE|DDB_G0283877 [details] [associations]
symbol:dus2l "tRNA-dihydrouridine synthase 2-like
protein" species:44689 "Dictyostelium discoideum" [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA;ISS] [GO:0008033
"tRNA processing" evidence=IEA;ISS] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;ISS] [GO:0006400 "tRNA modification" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
dictyBase:DDB_G0283877 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000153_GR Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AAFI02000057 eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082
KO:K05543 RefSeq:XP_638879.1 ProteinModelPortal:Q54QJ2
EnsemblProtists:DDB0238070 GeneID:8624277 KEGG:ddi:DDB_G0283877
OMA:TMTKYVV ProtClustDB:CLSZ2430328 Uniprot:Q54QJ2
Length = 402
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 33/110 (30%), Positives = 52/110 (47%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNE-VSSLPITVKTRTGIHKDNNIIH 457
+D+N+GCP F + G GS LL + ++ ++T + ++ +PIT K R + D I
Sbjct: 129 LDINMGCPKFFSVQGGMGSALLSKPETIKDILTTLKRNLNGIPITCKIRL-LSTDQETI- 186
Query: 458 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHN 507
+ + G S I +H R +R A WD +E S II N
Sbjct: 187 DLLRIIESTGVSAIGVHCRMIPERPRDPAHWDRLENILSNASFSVPIIAN 236
Score = 108 (43.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 30/98 (30%), Positives = 43/98 (43%)
Query: 496 QLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS-PAPLYG 554
+L S D I + + G S I +H R +R A WD +E S P+
Sbjct: 177 RLLSTDQETI-DLLRIIESTGVSAIGVHCRMIPERPRDPAHWDRLENILSNASFSVPIIA 235
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQE 592
NGDI + D E +KK + +MI RG + IF +
Sbjct: 236 NGDIFEHADI-EKIKKQTKVDSIMIARGVVKNVSIFSK 272
Score = 100 (40.3 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 33/126 (26%), Positives = 57/126 (45%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS-------------PQ 302
D+ K ++P+ VG P R L +G DI SE + +L+KS+ +
Sbjct: 29 DYYNKKIMAPMVRVGTYPMRILAYNYGCDIAYSEELIDLKLMKSTRVVNEKLKTIDFIAK 88
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ L R +D+ V QL + + +++ + +D+N+GCP F + G G
Sbjct: 89 DQTLCYRTSEKDVRNVLQLGTASSMTALEAAKVVCNDICA--LDINMGCPKFFSVQGGMG 146
Query: 362 SGLLQR 367
S LL +
Sbjct: 147 SALLSK 152
>CGD|CAL0004455 [details] [associations]
symbol:orf19.1404 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0004455 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 HOGENOM:HOG000203649 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_714575.1
RefSeq:XP_714669.1 ProteinModelPortal:Q59YC2 STRING:Q59YC2
GeneID:3643687 GeneID:3643817 KEGG:cal:CaO19.1404
KEGG:cal:CaO19.8982 Uniprot:Q59YC2
Length = 467
Score = 162 (62.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 41/123 (33%), Positives = 69/123 (56%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQSVIT 431
VQ C N+P L + +L+E + D +D+NLGCP + I ++G G+ L+ +++ +I
Sbjct: 122 VQFCANDPDYLLQAAKLIENEC--DAIDLNLGCP-QGIARKGKYGAFLMDDWDLVYKLIK 178
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+++ S+P+T K R I+ D + D GA IT+HGRTRE + T A+W
Sbjct: 179 NLHDNLSIPVTAKIR--IYDDYEKSLKYAKMVLDAGAQFITVHGRTREMKGQATGLANWK 236
Query: 490 YIE 492
++
Sbjct: 237 ILK 239
Score = 100 (40.3 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 258 QGKLYLSPLTTVGNLPFRRLCKKWGADITCSEM----AVAT-ELLKSSPQEWALIKRHES 312
Q K ++P+ L +R L +++GA + + M AT E ++S L +
Sbjct: 57 QPKTIVAPMVDQSELAWRILSRRYGAQLCYTPMFHAKLFATQEKYRNSMWTTNLDGNKDL 116
Query: 313 EDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLL 365
+ VQ C N+P L + +L+E + D +D+NLGCP + I ++G L
Sbjct: 117 DRPLVVQFCANDPDYLLQAAKLIENEC--DAIDLNLGCP-QGIARKGKYGAFL 166
Score = 98 (39.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 514 DWGASLITLHGRTREQR--YTKQADWDYIEKCAQ-LCSPAPLYGNGDILSYEDYTESLKK 570
D GA IT+HGRTRE + T A+W ++ L + NG+IL Y + +
Sbjct: 210 DAGAQFITVHGRTREMKGQATGLANWKILKYLRDNLPQDQVFFSNGNIL-YPSDIQRCQS 268
Query: 571 SPSISGVMIGRGALIKPWIFQEIKEKK 597
+ VM G L P +F + + K
Sbjct: 269 ETACDAVMSAEGNLYNPGVFWTLDDNK 295
>WB|WBGene00009452 [details] [associations]
symbol:F36A2.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:Z81077 PIR:T21830
RefSeq:NP_492379.1 UniGene:Cel.26704 ProteinModelPortal:Q9XVN8
SMR:Q9XVN8 STRING:Q9XVN8 PaxDb:Q9XVN8 EnsemblMetazoa:F36A2.2
GeneID:185334 KEGG:cel:CELE_F36A2.2 UCSC:F36A2.2 CTD:185334
WormBase:F36A2.2 InParanoid:Q9XVN8 OMA:YLFASQP NextBio:927896
Uniprot:Q9XVN8
Length = 527
Score = 162 (62.1 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 40/122 (32%), Positives = 65/122 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGS-GSGLLQRANILQSVIT 431
VQ C N +L+E+ V D VD+NLGCP + + K+G GS L +++ +++
Sbjct: 132 VQFCANKVDTFLAACRLVED--VCDGVDLNLGCP-QMVAKRGRYGSWLQDEVDLICEMVS 188
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+ + LPI+ K R + D + + D GA+++T+HGRTR+ + T ADW
Sbjct: 189 AVRDYCRLPISCKIR--VRDDRQQTVEYAKRLVDAGATMLTVHGRTRDMKGAETGLADWS 246
Query: 490 YI 491
I
Sbjct: 247 RI 248
Score = 105 (42.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 514 DWGASLITLHGRTREQR--YTKQADWDYIEKCAQLC-SPAPLYGNGDILSYEDYTESLKK 570
D GA+++T+HGRTR+ + T ADW I + S P+ NG+I D ++
Sbjct: 220 DAGATMLTVHGRTRDMKGAETGLADWSRIRDVVEAVGSRVPVMANGNIQFPGDVERCMQA 279
Query: 571 SPSISGVMIGRGALIKPWIFQE 592
+ +++ +M G L P IF +
Sbjct: 280 TGAVA-IMSAEGLLYNPLIFDD 300
Score = 105 (42.0 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 31/109 (28%), Positives = 50/109 (45%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCG 322
L+P+ L FR +K+GA +T + M A + + +++ VQ C
Sbjct: 77 LAPMVDQSELAFRMFTRKYGAQLTFTPMIHAHLFVNDGTYRRNSLALVKADRPLVVQFCA 136
Query: 323 NNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGS-GSGLLQRANL 370
N +L+E+ D VD+NLGCP + + K+G GS L +L
Sbjct: 137 NKVDTFLAACRLVED--VCDGVDLNLGCP-QMVAKRGRYGSWLQDEVDL 182
>MGI|MGI:1913619 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like (SMM1, S.
cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 PROSITE:PS50137
SMART:SM00358 InterPro:IPR014720 MGI:MGI:1913619 GO:GO:0005783
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580 HOVERGEN:HBG079551
KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W EMBL:AK009391 EMBL:BC058431
IPI:IPI00110119 RefSeq:NP_079794.1 UniGene:Mm.287500 PDB:1WHN
PDBsum:1WHN ProteinModelPortal:Q9D7B1 SMR:Q9D7B1 STRING:Q9D7B1
PhosphoSite:Q9D7B1 PaxDb:Q9D7B1 PRIDE:Q9D7B1
Ensembl:ENSMUST00000034375 GeneID:66369 KEGG:mmu:66369
GeneTree:ENSGT00550000075019 InParanoid:Q9D7B1
EvolutionaryTrace:Q9D7B1 NextBio:321469 Bgee:Q9D7B1
Genevestigator:Q9D7B1 GermOnline:ENSMUSG00000031901 Uniprot:Q9D7B1
Length = 493
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP E+ K G G+ LL + ++ +++ + + + P+T K R ++ + N
Sbjct: 110 IDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTL--N 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+ + G S I +HGR R++R + I A+ S
Sbjct: 168 LVKRIERTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLS 208
Score = 116 (45.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCKRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP E+ K G G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKEYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 92 (37.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG---DILSYED 563
N + + G S I +HGR R++R + I A+ S P+ NG D +
Sbjct: 167 NLVKRIERTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLS-IPVIANGGSHDHIQQHV 225
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIF 590
E +++ + S VM+ R A+ P IF
Sbjct: 226 DIEDFRQATAASSVMVARAAMWNPSIF 252
>RGD|1305612 [details] [associations]
symbol:Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 RGD:1305612
GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660 Gene3D:3.30.160.20
GO:GO:0003725 EMBL:CH473972 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:BC158728 IPI:IPI00363521
RefSeq:NP_001099651.1 UniGene:Rn.18304 SMR:B0BN89 STRING:B0BN89
Ensembl:ENSRNOT00000026827 GeneID:291978 KEGG:rno:291978
UCSC:RGD:1305612 NextBio:633545 Genevestigator:B0BN89
Uniprot:B0BN89
Length = 493
Score = 125 (49.1 bits), Expect = 0.00017, P = 0.00017
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP E+ K G G+ LL + ++ +++ + + + P+T K R ++ + N
Sbjct: 110 IDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTHRPVTCKIRILPSLEDTL--N 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+ + G S I +HGR R++R + I A+ S
Sbjct: 168 LVKRIERTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLS 208
Score = 116 (45.9 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 39/124 (31%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMLQCRRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP E+ K G G
Sbjct: 70 DRVVFRTCEREQSRVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKEYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 91 (37.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG---DILSYED 563
N + + G S I +HGR R++R + I A+ S P+ NG D +
Sbjct: 167 NLVKRIERTGISAIAVHGRNRDERPQHPVSCEVIRAIAETLS-IPVIANGGSHDHIQQHL 225
Query: 564 YTESLKKSPSISGVMIGRGALIKPWIF 590
E +++ + S VM+ R A+ P IF
Sbjct: 226 DIEDFRQATAASSVMVARAAMWNPSIF 252
>UNIPROTKB|Q0VC60 [details] [associations]
symbol:DUS2L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0017150
"tRNA dihydrouridine synthase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136 SMART:SM00358
InterPro:IPR014720 GO:GO:0005739 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 CTD:54920 HOGENOM:HOG000195580
HOVERGEN:HBG079551 KO:K05543 OMA:YHNKLIL OrthoDB:EOG4MW85W
GeneTree:ENSGT00550000075019 EMBL:DAAA02046690 EMBL:BC120342
IPI:IPI00715355 RefSeq:NP_001068887.1 UniGene:Bt.15762 SMR:Q0VC60
STRING:Q0VC60 Ensembl:ENSBTAT00000019500 GeneID:509795
KEGG:bta:509795 InParanoid:Q0VC60 NextBio:20869132 Uniprot:Q0VC60
Length = 493
Score = 119 (46.9 bits), Expect = 0.00076, P = 0.00076
Identities = 27/101 (26%), Positives = 53/101 (52%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP E+ K G G+ LL + ++ +++ + + + P+T K R ++ + +
Sbjct: 110 IDVNMGCPKEYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTL--S 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+ + G + I +HGR RE+R + I+ A+ S
Sbjct: 168 LVKRIERTGIAAIAVHGRKREERPQHPVSCEAIKAIAETLS 208
Score = 115 (45.5 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 39/124 (31%), Positives = 59/124 (47%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELVDLKMLQCKRVVNEALSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP E+ K G G
Sbjct: 70 DRVVFRTCEREQSKVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKEYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 91 (37.1 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 28/84 (33%), Positives = 42/84 (50%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESLKKS 571
G + I +HGR RE+R + I+ A+ S P+ NG I Y D E +++
Sbjct: 176 GIAAIAVHGRKREERPQHPVSCEAIKAIAETLS-IPVIANGGSHDHIQGYLDI-EDFRRA 233
Query: 572 PSISGVMIGRGALIKPWIFQEIKE 595
+ S VM+ R A+ P IF +KE
Sbjct: 234 TAASSVMVARAAMWNPSIF--LKE 255
>UNIPROTKB|G3N340 [details] [associations]
symbol:DUS1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:DAAA02049400 EMBL:DAAA02049401
Ensembl:ENSBTAT00000063588 Uniprot:G3N340
Length = 475
Score = 158 (60.7 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 40/123 (32%), Positives = 63/123 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVIT 431
VQ C N+P V + L ++ D +D+NLGCP + I K+G LQ ++LQ + T
Sbjct: 78 VQFCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQEEWDLLQRMRT 134
Query: 432 CMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWD 489
+ V P+T K R D + + G L+T+HGRT+EQ+ + A W+
Sbjct: 135 WGHMVVGCPVTCKIRVFPEIDKTV--RYAQMLEKAGCQLLTVHGRTKEQKGPLSGTASWE 192
Query: 490 YIE 492
+I+
Sbjct: 193 HIK 195
Score = 112 (44.5 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I D ++ +
Sbjct: 168 GCQLLTVHGRTKEQKGPLSGTASWEHI-KAVRKAVTIPVFANGNIQCLRDVERCIQDT-G 225
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 226 VQGVMSAEGNLHNPALFE 243
Score = 91 (37.1 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 29/107 (27%), Positives = 49/107 (45%)
Query: 263 LSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRH---ESEDLFGVQ 319
++P+ L +R L ++ GA + + M A ++ + + E L VQ
Sbjct: 21 VAPMVDQSELAWRLLSRRHGAHLCYTPMLHAQVFVRDANYRKENLYCDVCPEDRPLI-VQ 79
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 80 FCANDPEVFVQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGAFLQ 123
>UNIPROTKB|Q8EAJ0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR004653 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 141 (54.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
Q + +QL G+NP L +C +L E+ D V++N+GCP + + G+ L+ +
Sbjct: 64 QEEHPLALQLGGSNPVELARCAKLAAERGY-DEVNLNVGCPSDRVQNGRFGACLMAEPEL 122
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
+ + M +V +P+TVKTR GI + ++ + F+ F D
Sbjct: 123 VAECVDAMKQVVDIPVTVKTRIGIDEQDS--YEFLTHFID 160
Score = 56 (24.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
+E R D+D + + + + NG I S E L+ + GVM+GR A
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH---LDGVMVGREAYQN 241
Query: 587 PWIFQEIKE 595
P++ ++ +
Sbjct: 242 PYMLAQVDQ 250
>TIGR_CMR|SO_3912 [details] [associations]
symbol:SO_3912 "TIM-barrel protein, yjbN family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_719443.1 ProteinModelPortal:Q8EAJ0 GeneID:1171552
KEGG:son:SO_3912 PATRIC:23527504 Uniprot:Q8EAJ0
Length = 335
Score = 141 (54.7 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 31/100 (31%), Positives = 55/100 (55%)
Query: 366 QRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANI 425
Q + +QL G+NP L +C +L E+ D V++N+GCP + + G+ L+ +
Sbjct: 64 QEEHPLALQLGGSNPVELARCAKLAAERGY-DEVNLNVGCPSDRVQNGRFGACLMAEPEL 122
Query: 426 LQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
+ + M +V +P+TVKTR GI + ++ + F+ F D
Sbjct: 123 VAECVDAMKQVVDIPVTVKTRIGIDEQDS--YEFLTHFID 160
Score = 56 (24.8 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
+E R D+D + + + + NG I S E L+ + GVM+GR A
Sbjct: 185 KENREIPPLDYDRVYQLKRDYPALNISINGGITSLEQAQTHLQH---LDGVMVGREAYQN 241
Query: 587 PWIFQEIKE 595
P++ ++ +
Sbjct: 242 PYMLAQVDQ 250
>UNIPROTKB|Q9NX74 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001159 InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207 PROSITE:PS01136
PROSITE:PS50137 SMART:SM00358 InterPro:IPR014720 GO:GO:0005783
GO:GO:0005739 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:CH471092 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 EMBL:AB101210
EMBL:AK000406 EMBL:AK290578 EMBL:BC006527 IPI:IPI00015804
RefSeq:NP_001258691.1 RefSeq:NP_060273.1 UniGene:Hs.534460
ProteinModelPortal:Q9NX74 SMR:Q9NX74 IntAct:Q9NX74 STRING:Q9NX74
PhosphoSite:Q9NX74 DMDM:73620832 PaxDb:Q9NX74 PRIDE:Q9NX74
DNASU:54920 Ensembl:ENST00000358896 Ensembl:ENST00000565263
GeneID:54920 KEGG:hsa:54920 UCSC:uc002evi.3 CTD:54920
GeneCards:GC16P068058 HGNC:HGNC:26014 HPA:HPA042560 HPA:HPA043528
MIM:609707 neXtProt:NX_Q9NX74 PharmGKB:PA142671937
HOGENOM:HOG000195580 HOVERGEN:HBG079551 InParanoid:Q9NX74 KO:K05543
OMA:YHNKLIL OrthoDB:EOG4MW85W PhylomeDB:Q9NX74 GenomeRNAi:54920
NextBio:57992 ArrayExpress:Q9NX74 Bgee:Q9NX74 CleanEx:HS_DUS2L
Genevestigator:Q9NX74 Uniprot:Q9NX74
Length = 493
Score = 112 (44.5 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 38/124 (30%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP ++ K G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKQYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 92 (37.4 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESLKKS 571
G + I +HGR RE+R + I+ A S P+ NG I Y D E +++
Sbjct: 176 GIAAIAVHGRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDI-EDFRQA 233
Query: 572 PSISGVMIGRGALIKPWIFQEIKE 595
+ S VM+ R A+ P IF +KE
Sbjct: 234 TAASSVMVARAAMWNPSIF--LKE 255
>UNIPROTKB|Q8EFG7 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 152 (58.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 48/183 (26%), Positives = 87/183 (47%)
Query: 313 EDLFGVQLCGNNPY--VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+DL L NPY ++T+ ++++ Q+ + V + L CP E + + SG R
Sbjct: 13 DDLMRDILSSINPYDLLVTEFVRVVD-QLLPEKVFLKL-CP-ELLSGGYTPSGTPVR--- 66
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQL G P + + + ++ VD N GCP + + + G+ LLQ N + ++
Sbjct: 67 --VQLLGQEPNCMAE-NAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 431 TCMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
M + + P+T K R G + + N + + + GA+ + +H R++ Y A W
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVY-EAGATELAIHARSKVDGYKPPAYW 182
Query: 489 DYI 491
+YI
Sbjct: 183 EYI 185
Score = 133 (51.9 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 55/223 (24%), Positives = 105/223 (47%)
Query: 379 NPY--VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
NPY ++T+ ++++ Q++ + V + L CP E + + SG R +L CM E
Sbjct: 24 NPYDLLVTEFVRVVD-QLLPEKVFLKL-CP-ELLSGGYTPSGTPVRVQLLGQEPNCMAEN 80
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI----TLHGRTREQRYTKQADWDYIE 492
+ I + + G+ + + + + GA L+ T+H R R A+
Sbjct: 81 AMRAIELGSH-GVDANFGCPAKMVNR-SNGGAVLLQYPNTIHDIVRAMRQAVPAEHPVTA 138
Query: 493 KCAQLCSRDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K +L D ++ + N + + + GA+ + +H R++ Y A W+YI + + P P
Sbjct: 139 KI-RLGYEDKSLFMENALAVY-EAGATELAIHARSKVDGYKPPAYWEYITEVRERL-PIP 195
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ NG+I + +D ++ + +MIGRGA+ P + IK
Sbjct: 196 VIANGEIWNRDDAKRCMQVT-GCDSIMIGRGAISLPNLADTIK 237
>TIGR_CMR|SO_2006 [details] [associations]
symbol:SO_2006 "NifR3/Smm1 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
PIRSF:PIRSF006621 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:NP_717612.1 ProteinModelPortal:Q8EFG7
GeneID:1169758 KEGG:son:SO_2006 PATRIC:23523633
ProtClustDB:CLSK906542 Uniprot:Q8EFG7
Length = 315
Score = 152 (58.6 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 48/183 (26%), Positives = 87/183 (47%)
Query: 313 EDLFGVQLCGNNPY--VLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+DL L NPY ++T+ ++++ Q+ + V + L CP E + + SG R
Sbjct: 13 DDLMRDILSSINPYDLLVTEFVRVVD-QLLPEKVFLKL-CP-ELLSGGYTPSGTPVR--- 66
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQL G P + + + ++ VD N GCP + + + G+ LLQ N + ++
Sbjct: 67 --VQLLGQEPNCMAE-NAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHDIV 123
Query: 431 TCMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADW 488
M + + P+T K R G + + N + + + GA+ + +H R++ Y A W
Sbjct: 124 RAMRQAVPAEHPVTAKIRLGYEDKSLFMENALAVY-EAGATELAIHARSKVDGYKPPAYW 182
Query: 489 DYI 491
+YI
Sbjct: 183 EYI 185
Score = 133 (51.9 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 55/223 (24%), Positives = 105/223 (47%)
Query: 379 NPY--VLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
NPY ++T+ ++++ Q++ + V + L CP E + + SG R +L CM E
Sbjct: 24 NPYDLLVTEFVRVVD-QLLPEKVFLKL-CP-ELLSGGYTPSGTPVRVQLLGQEPNCMAEN 80
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLI----TLHGRTREQRYTKQADWDYIE 492
+ I + + G+ + + + + GA L+ T+H R R A+
Sbjct: 81 AMRAIELGSH-GVDANFGCPAKMVNR-SNGGAVLLQYPNTIHDIVRAMRQAVPAEHPVTA 138
Query: 493 KCAQLCSRDNNI-IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAP 551
K +L D ++ + N + + + GA+ + +H R++ Y A W+YI + + P P
Sbjct: 139 KI-RLGYEDKSLFMENALAVY-EAGATELAIHARSKVDGYKPPAYWEYITEVRERL-PIP 195
Query: 552 LYGNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIK 594
+ NG+I + +D ++ + +MIGRGA+ P + IK
Sbjct: 196 VIANGEIWNRDDAKRCMQVT-GCDSIMIGRGAISLPNLADTIK 237
>UNIPROTKB|Q9KUX9 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 136 (52.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
I+ +G Q + +Q G+NP L C +L +E+ D +++N+GCP + +
Sbjct: 44 IHGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGY-DEINLNVGCPSDRVQNGR 102
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-----RDWGAS 469
G+ L+ +++ + M V +P+TVKTR GI D+ + F+ +F G
Sbjct: 103 FGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGI--DDQDSYEFLTQFIATVAEKGGCE 160
Query: 470 LITLHGR 476
T+H R
Sbjct: 161 QFTIHAR 167
Score = 59 (25.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVWK 607
NG + S E+ L+ + GVMIGR A P++ E+ ++++F + V K
Sbjct: 205 NGGVKSLEEAKLHLQH---LDGVMIGREAYQNPYLLAEV-DQQIFGLETPVKK 253
>TIGR_CMR|VC_0379 [details] [associations]
symbol:VC_0379 "TIM-barrel protein, yjbN family"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR004653 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
PIR:G82330 RefSeq:NP_230033.1 ProteinModelPortal:Q9KUX9
DNASU:2615022 GeneID:2615022 KEGG:vch:VC0379 PATRIC:20079827
Uniprot:Q9KUX9
Length = 327
Score = 136 (52.9 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
I+ +G Q + +Q G+NP L C +L +E+ D +++N+GCP + +
Sbjct: 44 IHGRGDFLAYNQEEHPVALQFGGSNPKDLAHCAKLAQERGY-DEINLNVGCPSDRVQNGR 102
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF-----RDWGAS 469
G+ L+ +++ + M V +P+TVKTR GI D+ + F+ +F G
Sbjct: 103 FGACLMGEPDLVAECVAAMRAVVDIPVTVKTRIGI--DDQDSYEFLTQFIATVAEKGGCE 160
Query: 470 LITLHGR 476
T+H R
Sbjct: 161 QFTIHAR 167
Score = 59 (25.8 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVWK 607
NG + S E+ L+ + GVMIGR A P++ E+ ++++F + V K
Sbjct: 205 NGGVKSLEEAKLHLQH---LDGVMIGREAYQNPYLLAEV-DQQIFGLETPVKK 253
>ZFIN|ZDB-GENE-030131-1435 [details] [associations]
symbol:dus1l "dihydrouridine synthase 1-like (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 Pfam:PF01207
ZFIN:ZDB-GENE-030131-1435 Gene3D:3.20.20.70 GO:GO:0050660
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000075089 EMBL:BX897685 IPI:IPI00481340
ProteinModelPortal:F1QQD1 Ensembl:ENSDART00000127028
ArrayExpress:F1QQD1 Bgee:F1QQD1 Uniprot:F1QQD1
Length = 511
Score = 155 (59.6 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 40/122 (32%), Positives = 63/122 (51%)
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NILQSVITC 432
Q C N+P V + L ++ D +D+NLGCP + I K+G LQ ++L+ +I
Sbjct: 111 QFCANDPEVFIQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGVFLQDEWDLLEKMIKL 167
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR--YTKQADWDY 490
NE S+PIT K R + + + G L+T+HGRT++Q+ T A W +
Sbjct: 168 ANEKLSVPITCKIRVFPEIEKTV--KYAKMLEKAGCQLLTVHGRTKDQKGALTGIASWKH 225
Query: 491 IE 492
I+
Sbjct: 226 IK 227
Score = 107 (42.7 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT++Q+ T A W +I+ + + P++ NG+I D ++++
Sbjct: 200 GCQLLTVHGRTKDQKGALTGIASWKHIKAVREAVN-IPVFANGNIQHLSDVHHCMEET-G 257
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 258 VQGVMSAEGNLHNPALFE 275
Score = 96 (38.9 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP-QEWALIKRHESEDL-FG 317
+ ++P+ L +R L ++ GA++ + M A ++ + + L ED
Sbjct: 50 RFVVAPMVDQSELAWRLLSRRHGAELCYTPMLHAQVFVRDANYRRENLYSEVNQEDRPLI 109
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
Q C N+P V + L ++ D +D+NLGCP + I K+G LQ
Sbjct: 110 TQFCANDPEVFIQAALLAQDYC--DAIDLNLGCP-QMIAKRGHYGVFLQ 155
>WB|WBGene00013201 [details] [associations]
symbol:Y54E5A.6 species:6239 "Caenorhabditis elegans"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
EMBL:AL032643 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OMA:TMTKYVV PIR:T27160
RefSeq:NP_493554.1 UniGene:Cel.16372 ProteinModelPortal:Q9XWJ9
SMR:Q9XWJ9 PaxDb:Q9XWJ9 EnsemblMetazoa:Y54E5A.6 GeneID:173331
KEGG:cel:CELE_Y54E5A.6 UCSC:Y54E5A.6 CTD:173331 WormBase:Y54E5A.6
InParanoid:Q9XWJ9 NextBio:879203 Uniprot:Q9XWJ9
Length = 436
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 31/124 (25%), Positives = 58/124 (46%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ N+ K Q++ + V +DVN+GCP F G G+ LL + + ++T
Sbjct: 80 LQIGTNSGEKAAKIAQIVGDD--VAGIDVNMGCPKPFSIHCGMGAALLTQTEKIVDILTS 137
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE 492
+ + +P+T K R ++ + + + S + +HGR R++R + D I
Sbjct: 138 LKSAAKVPVTCKIRVLDDPEDTL--KLVQEIEKCRVSALGVHGRRRDERQPDKCRIDEIR 195
Query: 493 KCAQ 496
AQ
Sbjct: 196 DVAQ 199
Score = 108 (43.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 34/123 (27%), Positives = 59/123 (47%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSP---QEWALIKRHESE 313
++ K L+P+ G P R LC K+GAD+ +E V +L++++ + I +
Sbjct: 5 YRNKKILAPMVRAGRTPLRLLCLKYGADLCYTEEIVDKKLIEATRVVNEALGTIDYRNGD 64
Query: 314 DLF--------G---VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
D+ G +Q+ N+ K Q++ + +A +DVN+GCP F G G+
Sbjct: 65 DIILRLAPEEKGRCILQIGTNSGEKAAKIAQIVGDDVAG--IDVNMGCPKPFSIHCGMGA 122
Query: 363 GLL 365
LL
Sbjct: 123 ALL 125
Score = 91 (37.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 518 SLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNG---DILSYEDYTESLKKSPSI 574
S + +HGR R++R + D I AQ P+ NG +I Y D+ E +
Sbjct: 172 SALGVHGRRRDERQPDKCRIDEIRDVAQAVQSIPVISNGLSDEIEQYSDF-EKYQLLTET 230
Query: 575 SGVMIGRGALIKPWIFQ 591
S MI R AL P IF+
Sbjct: 231 SSTMIARKALSTPSIFR 247
>FB|FBgn0032750 [details] [associations]
symbol:CG10495 species:7227 "Drosophila melanogaster"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
EMBL:AE014134 Gene3D:3.20.20.70 GO:GO:0050660 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:AY069347 RefSeq:NP_609939.1
UniGene:Dm.465 SMR:Q9VJ06 STRING:Q9VJ06 EnsemblMetazoa:FBtr0081150
GeneID:35179 KEGG:dme:Dmel_CG10495 UCSC:CG10495-RA
FlyBase:FBgn0032750 InParanoid:Q9VJ06 OrthoDB:EOG4X3FH5
GenomeRNAi:35179 NextBio:792243 Uniprot:Q9VJ06
Length = 396
Score = 104 (41.7 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 516 GASLITLHGRTREQRYTKQA-DWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
G + +TLHGRT Q+++K D + + Q PL NG++ SY D + + +
Sbjct: 177 GVTFLTLHGRTPAQKHSKDTLDIPAMSQVRQSLQ-IPLIVNGNVESYRDACD-MHEQTGA 234
Query: 575 SGVMIGRGALIKPWIF 590
+GVM RG L P +F
Sbjct: 235 AGVMAARGLLANPALF 250
Score = 93 (37.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/107 (23%), Positives = 43/107 (40%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FRRL + G + + M ++ + S + Q
Sbjct: 28 APMVRYSKLEFRRLVRLNGVQLAFTPMMISDSINNSEKARQNEFSTGADDQPLIAQFAAK 87
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+P QL+ VD +D+N GCP + +G G G+L++ L
Sbjct: 88 DPTEFVTSAQLIYPY--VDGIDLNCGCPQSWAMAKGYGCGMLRQPEL 132
>ASPGD|ASPL0000054271 [details] [associations]
symbol:AN0956 species:162425 "Emericella nidulans"
[GO:0006400 "tRNA modification" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 EMBL:BN001308
GO:GO:0050660 EMBL:AACD01000014 eggNOG:COG0042 HOGENOM:HOG000203649
KO:K05542 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
OrthoDB:EOG480N5B RefSeq:XP_658560.1 ProteinModelPortal:Q5BES4
STRING:Q5BES4 EnsemblFungi:CADANIAT00001695 GeneID:2876733
KEGG:ani:AN0956.2 OMA:GHNTGLA Uniprot:Q5BES4
Length = 563
Score = 155 (59.6 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 46/134 (34%), Positives = 68/134 (50%)
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G+ + R LF VQ C N+P + + D VD+NLGCP + I ++G L
Sbjct: 117 GNPAIDRP-LF-VQFCANDPDDFFNAARHVAPYC--DAVDLNLGCP-QGIARRGHYGAFL 171
Query: 421 QRA-NILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTRE 479
Q +++ +I ++ +P+T K R K+ + + GAS+ITLHGRTRE
Sbjct: 172 QEDWDLIYKLINKLHMELEVPVTAKFRIQESKEKTL--EYAKMILSAGASIITLHGRTRE 229
Query: 480 QR--YTKQADWDYI 491
Q+ T ADW YI
Sbjct: 230 QKGHNTGLADWSYI 243
Score = 132 (51.5 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 33/78 (42%), Positives = 44/78 (56%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSP-APLYGNGDILSYEDYTESLKKSP 572
GAS+ITLHGRTREQ+ T ADW YI P ++ NG+ L+++D L+ +
Sbjct: 217 GASIITLHGRTREQKGHNTGLADWSYIRYLRDNLPPDTVIFANGNNLNHDDLARCLEATG 276
Query: 573 SISGVMIGRGALIKPWIF 590
+ GVM G L P IF
Sbjct: 277 A-DGVMSAEGNLSDPSIF 293
Score = 62 (26.9 bits), Expect = 3.8e-07, Sum P(3) = 3.8e-07
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
LF VQ C N+P + + D VD+NLGCP + I ++G LQ
Sbjct: 125 LF-VQFCANDPDDFFNAARHVAPYC--DAVDLNLGCP-QGIARRGHYGAFLQ 172
Score = 43 (20.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 202 DDCCKNQDSKVIEGREEINTP 222
D CK DS ++G I+ P
Sbjct: 104 DTKCKGDDSPYLDGNPAIDRP 124
>UNIPROTKB|Q83D40 [details] [associations]
symbol:CBU_0904 "tRNA-dihydrouridine synthase"
species:227377 "Coxiella burnetii RSA 493" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 140 (54.3 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 30/106 (28%), Positives = 59/106 (55%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ G++P L C +L EE+ D +++N+GCP + G+ LL+ A ++ +
Sbjct: 87 LQVGGSDPQSLALCARLAEEKGF-DEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAA 145
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGR 476
M+ ++P++VKTRTG+ ++ H +F+ + G + +H R
Sbjct: 146 MSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHAR 191
Score = 50 (22.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587
NG I + E + L++ + GVMIGR A P
Sbjct: 229 NGGIKTIEAINDHLRE---VDGVMIGREAYANP 258
>TIGR_CMR|CBU_0904 [details] [associations]
symbol:CBU_0904 "TIM-barrel protein, yjbN family"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:NP_819919.1
ProteinModelPortal:Q83D40 PRIDE:Q83D40 GeneID:1208797
KEGG:cbu:CBU_0904 PATRIC:17930509
BioCyc:CBUR227377:GJ7S-895-MONOMER Uniprot:Q83D40
Length = 353
Score = 140 (54.3 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 30/106 (28%), Positives = 59/106 (55%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+Q+ G++P L C +L EE+ D +++N+GCP + G+ LL+ A ++ +
Sbjct: 87 LQVGGSDPQSLALCARLAEEKGF-DEINLNVGCPSGRVIAGRFGACLLKEAELVADCVAA 145
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGR 476
M+ ++P++VKTRTG+ ++ H +F+ + G + +H R
Sbjct: 146 MSAEVNIPVSVKTRTGVDDQDSYEHLYHFVKTVAEAGCRIFIIHAR 191
Score = 50 (22.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKP 587
NG I + E + L++ + GVMIGR A P
Sbjct: 229 NGGIKTIEAINDHLRE---VDGVMIGREAYANP 258
>SGD|S000005298 [details] [associations]
symbol:SMM1 "Dihydrouridine synthase" species:4932
"Saccharomyces cerevisiae" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=IEA] [GO:0006400 "tRNA modification"
evidence=IMP;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA;IGI] [GO:0017150 "tRNA dihydrouridine
synthase activity" evidence=IEA;IDA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
SGD:S000005298 GO:GO:0005634 GO:GO:0005737 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BK006947 EMBL:Z71631 eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000195580 KO:K05543
GeneTree:ENSGT00550000075019 OrthoDB:EOG4PG98M EMBL:X91816
EMBL:Z71630 PIR:S63345 RefSeq:NP_014412.1 ProteinModelPortal:P53720
DIP:DIP-4102N MINT:MINT-551094 STRING:P53720 PaxDb:P53720
PeptideAtlas:P53720 EnsemblFungi:YNR015W GeneID:855749
KEGG:sce:YNR015W CYGD:YNR015w OMA:VEESMFY
BioCyc:MetaCyc:MONOMER-16677 NextBio:980160 Genevestigator:P53720
GermOnline:YNR015W Uniprot:P53720
Length = 384
Score = 123 (48.4 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRAN----ILQSVITCMNEVSSLPITVKTRTGIHK 451
V +D+N GCP F G GS LL+ + IL+ ++ + S PI+VK R K
Sbjct: 108 VSGIDINAGCPKHFSIHSGMGSALLRTPDTLCLILKELVKNVGNPHSKPISVKIRLLDTK 167
Query: 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDN-NIIHN 507
+ + + + G + +T+H R E R +Q DYI + ++C +N ++I N
Sbjct: 168 QDTL--QLVKRLCATGITNLTVHCRKTEMRNREQPITDYIAEIYEICQANNVSLIVN 222
Score = 68 (29.0 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQE 303
+ GKL L+P+ G LP R + GAD+ S + +L++ +E
Sbjct: 4 YAGKLVLAPMVRAGELPTRLMALAHGADLVWSPEIIDKKLIQCVRKE 50
>UNIPROTKB|P32695 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U00006 eggNOG:COG0042 GO:GO:0017150
PANTHER:PTHR11082 RefSeq:NP_418473.2 RefSeq:YP_492192.1
ProteinModelPortal:P32695 SMR:P32695 PRIDE:P32695
EnsemblBacteria:EBESCT00000004365 EnsemblBacteria:EBESCT00000018223
GeneID:12930614 GeneID:948558 KEGG:ecj:Y75_p3936 KEGG:eco:b4049
PATRIC:32123637 EchoBASE:EB1876 EcoGene:EG11932
HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815
BioCyc:EcoCyc:EG11932-MONOMER BioCyc:ECOL316407:JW5950-MONOMER
BioCyc:MetaCyc:EG11932-MONOMER Genevestigator:P32695
TIGRFAMs:TIGR00742 Uniprot:P32695
Length = 330
Score = 136 (52.9 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/109 (29%), Positives = 59/109 (54%)
Query: 355 IYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQG 414
I+ +G + + +QL G++P L +C +L E + D +++N+GCP + +
Sbjct: 50 IHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGY-DEINLNVGCPSDRVQNGM 108
Query: 415 SGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKF 463
G+ L+ A ++ + M +V S+P+TVKTR GI D+ + F+ F
Sbjct: 109 FGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGI--DDQDSYEFLCDF 155
Score = 51 (23.0 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 555 NGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLF 599
NG I S E+ L+ + GVM+GR A P I + ++++F
Sbjct: 211 NGGIKSLEEAKAHLQH---MDGVMVGREAYQNPGILAAV-DREIF 251
>UNIPROTKB|Q487W0 [details] [associations]
symbol:CPS_0906 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
OMA:FYHVARI RefSeq:YP_267655.1 ProteinModelPortal:Q487W0
STRING:Q487W0 DNASU:3523360 GeneID:3523360 KEGG:cps:CPS_0906
PATRIC:21465097 BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 373 VQLCGNNP-YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQL G P Y+ +++E + +D+N GCP + + K GS LL+ L +I
Sbjct: 71 VQLLGQYPEYMAENAAKVIE--LGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQIIK 128
Query: 432 CMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S ++ K R G I N GA+ +T+H RT+ + Y A W
Sbjct: 129 AVKEAVPSDTIVSAKIRLGYEDKTLAIENGQA-VEAAGANELTIHARTKLEGYKPPAHWH 187
Query: 490 YIEK 493
+I K
Sbjct: 188 WIAK 191
Score = 116 (45.9 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
GA+ +T+H RT+ + Y A W +I K + P+ NG+I + ED + + S +
Sbjct: 165 GANELTIHARTKLEGYKPPAHWHWIAKVKNAIN-IPVIANGEIWNLEDAIKCREIS-GCT 222
Query: 576 GVMIGRGALIKPWIFQEIKEK 596
+M+GRGAL P + Q IK++
Sbjct: 223 DLMVGRGALTIPNLGQVIKQE 243
Score = 71 (30.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 318 VQLCGNNP-YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NLFGV 373
VQL G P Y+ +++E + +D+N GCP + + K GS LL+ NL+ +
Sbjct: 71 VQLLGQYPEYMAENAAKVIE--LGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQI 126
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/122 (22%), Positives = 54/122 (44%)
Query: 76 YCPFLKDSTLEQTC-KYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFG 134
YCP L D+ + +C K G + + PE ++E ++ G GI FG
Sbjct: 49 YCPELIDADVYGSCTKAGTPVRVQ-----LLGQYPEYMAENAAKVIELG--SSGIDLNFG 101
Query: 135 --SSHLDEN-GGNIVKED------VLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
S ++++ GG+I+ +D ++K K V + T+ ++ ++R T E +
Sbjct: 102 CPSKTVNKSRGGSILLKDPENLYQIIKAVKEAVPSDTI--VSAKIRLGYEDKTLAIENGQ 159
Query: 186 KI 187
+
Sbjct: 160 AV 161
>TIGR_CMR|CPS_0906 [details] [associations]
symbol:CPS_0906 "NifR3/Smm1 family protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI RefSeq:YP_267655.1
ProteinModelPortal:Q487W0 STRING:Q487W0 DNASU:3523360
GeneID:3523360 KEGG:cps:CPS_0906 PATRIC:21465097
BioCyc:CPSY167879:GI48-992-MONOMER Uniprot:Q487W0
Length = 310
Score = 127 (49.8 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 37/124 (29%), Positives = 57/124 (45%)
Query: 373 VQLCGNNP-YVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVIT 431
VQL G P Y+ +++E + +D+N GCP + + K GS LL+ L +I
Sbjct: 71 VQLLGQYPEYMAENAAKVIE--LGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQIIK 128
Query: 432 CMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWD 489
+ E S ++ K R G I N GA+ +T+H RT+ + Y A W
Sbjct: 129 AVKEAVPSDTIVSAKIRLGYEDKTLAIENGQA-VEAAGANELTIHARTKLEGYKPPAHWH 187
Query: 490 YIEK 493
+I K
Sbjct: 188 WIAK 191
Score = 116 (45.9 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
GA+ +T+H RT+ + Y A W +I K + P+ NG+I + ED + + S +
Sbjct: 165 GANELTIHARTKLEGYKPPAHWHWIAKVKNAIN-IPVIANGEIWNLEDAIKCREIS-GCT 222
Query: 576 GVMIGRGALIKPWIFQEIKEK 596
+M+GRGAL P + Q IK++
Sbjct: 223 DLMVGRGALTIPNLGQVIKQE 243
Score = 71 (30.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 318 VQLCGNNP-YVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRA-NLFGV 373
VQL G P Y+ +++E + +D+N GCP + + K GS LL+ NL+ +
Sbjct: 71 VQLLGQYPEYMAENAAKVIE--LGSSGIDLNFGCPSKTVNKSRGGSILLKDPENLYQI 126
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 28/122 (22%), Positives = 54/122 (44%)
Query: 76 YCPFLKDSTLEQTC-KYGEKCKFVHDKNVFMKSKPEDISEQCYVFLQHGYCPMGIACRFG 134
YCP L D+ + +C K G + + PE ++E ++ G GI FG
Sbjct: 49 YCPELIDADVYGSCTKAGTPVRVQ-----LLGQYPEYMAENAAKVIELG--SSGIDLNFG 101
Query: 135 --SSHLDEN-GGNIVKED------VLKEWKNTVGNKTVNMLANEVRQDLRKHTYNFEKSE 185
S ++++ GG+I+ +D ++K K V + T+ ++ ++R T E +
Sbjct: 102 CPSKTVNKSRGGSILLKDPENLYQIIKAVKEAVPSDTI--VSAKIRLGYEDKTLAIENGQ 159
Query: 186 KI 187
+
Sbjct: 160 AV 161
>UNIPROTKB|G4MUR1 [details] [associations]
symbol:MGG_08825 "tRNA-dihydrouridine synthase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:CM001232 KO:K05542
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 RefSeq:XP_003713841.1
ProteinModelPortal:G4MUR1 EnsemblFungi:MGG_08825T0 GeneID:2679811
KEGG:mgr:MGG_08825 Uniprot:G4MUR1
Length = 614
Score = 148 (57.2 bits), Expect = 7.3e-07, P = 7.3e-07
Identities = 43/133 (32%), Positives = 67/133 (50%)
Query: 361 GSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLL 420
G+ + R LF VQ C N+P L + + + D VD+NLGCP K G+ L
Sbjct: 112 GNPAIDRP-LF-VQFCANDPSALLEAAKHVAPYC--DAVDLNLGCPQGIARKGHYGAFLQ 167
Query: 421 QRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQ 480
+ ++ +I +++ S+P+T K R + + + D GAS++T+HGR REQ
Sbjct: 168 EDQELIHKLIRQLHDGLSIPVTAKIRILDTPEATLA--YARNVLDAGASILTVHGRRREQ 225
Query: 481 R--YTKQADWDYI 491
+ T ADW I
Sbjct: 226 KGHLTGVADWSAI 238
Score = 109 (43.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 29/80 (36%), Positives = 41/80 (51%)
Query: 514 DWGASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAP-LYGNGDILSYEDYTESLKK 570
D GAS++T+HGR REQ+ T ADW I + P ++ NG+IL D L+
Sbjct: 210 DAGASILTVHGRRREQKGHLTGVADWSAIRHLRENLPPETVIFANGNILQRGDLERCLEA 269
Query: 571 SPSISGVMIGRGALIKPWIF 590
+ + VM G L P +F
Sbjct: 270 TGA-DAVMSAEGNLSDPTLF 288
Score = 72 (30.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 315 LFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQ 366
LF VQ C N+P L + + + D VD+NLGCP + I ++G LQ
Sbjct: 120 LF-VQFCANDPSALLEAAKHVAPYC--DAVDLNLGCP-QGIARKGHYGAFLQ 167
>FB|FBgn0030554 [details] [associations]
symbol:CG1434 species:7227 "Drosophila melanogaster"
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF00035 Pfam:PF01207
PROSITE:PS01136 SMART:SM00358 InterPro:IPR014720 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE014298 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05543 GeneTree:ENSGT00550000075019 OMA:KEMIMHY
FlyBase:FBgn0030554 EMBL:BT031195 RefSeq:NP_572950.2 UniGene:Dm.163
SMR:Q9VY45 STRING:Q9VY45 EnsemblMetazoa:FBtr0073903 GeneID:32377
KEGG:dme:Dmel_CG1434 UCSC:CG1434-RA InParanoid:Q9VY45
GenomeRNAi:32377 NextBio:778177 Uniprot:Q9VY45
Length = 473
Score = 121 (47.7 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 41/124 (33%), Positives = 58/124 (46%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKS----SPQEWALIKRHE 311
D++ KL L+P+ VG LP R L + GADI +E V +L+KS +P +
Sbjct: 21 DYRNKLILAPMVRVGTLPMRLLALEMGADIVYTEELVDIKLIKSIRRPNPALGTVDFVDP 80
Query: 312 SEDLFGVQLCGNNP--YVLTKCTQLLEEQMAV------DF--VDVNLGCPIEFIYKQGSG 361
S+ + C VL T +AV D +D+N+GCP EF K G G
Sbjct: 81 SDGTIVFRTCAQETSRLVLQMGTSDAGRALAVGKLLQRDISGLDINMGCPKEFSIKGGMG 140
Query: 362 SGLL 365
+ LL
Sbjct: 141 AALL 144
Score = 70 (29.7 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 25/88 (28%), Positives = 39/88 (44%)
Query: 507 NFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTE 566
+ + K G + I +H RTR++R A + + AQ P+ NG + Y +
Sbjct: 180 DLVQKLAATGIAAIGIHARTRDERPQHPAHPEVLRAVAQAVD-IPIIANGGSKNMHCY-D 237
Query: 567 SLKKSPSISG---VMIGRGALIKPWIFQ 591
L+K G VM+ R A I IF+
Sbjct: 238 DLRKFQMECGADSVMVARAAQINVSIFR 265
>UNIPROTKB|Q81ZD5 [details] [associations]
symbol:BAS0319 "tRNA-dihydrouridine synthase" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 InterPro:IPR024036
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/124 (27%), Positives = 65/124 (52%)
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
G+NP + + + E + +D+N+GCP+ + +G GSGL+ R ++ +I +
Sbjct: 78 GDNPEYFRQMSIGMAE-LGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAA-KA 135
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
LP++VKTR G K+ + +++ + +++H RTRE+ A W+ I + +
Sbjct: 136 GGLPVSVKTRLGF-KELSEWEDWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEIKK 194
Query: 497 LCSR 500
L R
Sbjct: 195 LRDR 198
Score = 92 (37.4 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQL---CSPAPLYG-NGDILSYEDYTESLKKSPSIS 575
+++H RTRE+ A W+ I + +L +P L NGDI + E +K I
Sbjct: 169 LSIHLRTREEMSQVDAHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKY-GID 227
Query: 576 GVMIGRGALIKPWIFQE 592
GVMIGRG P+ F++
Sbjct: 228 GVMIGRGIFKNPFAFEK 244
Score = 87 (35.7 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 26/113 (23%), Positives = 53/113 (46%)
Query: 263 LSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRH----ESEDLFG 317
L+P+ V ++ FR + + G D+ +E + P+ ++ E E
Sbjct: 16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCH--PEGMKSVRGRLIFTEDEQPMV 73
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ G+NP + + + E + +D+N+GCP+ + +G GSGL+ R ++
Sbjct: 74 AHIWGDNPEYFRQMSIGMAE-LGFKGIDINMGCPVPNVASRGKGSGLILRPDV 125
>TIGR_CMR|BA_0334 [details] [associations]
symbol:BA_0334 "conserved hypothetical protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
InterPro:IPR024036 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Gene3D:1.10.1200.80 RefSeq:NP_842881.1
RefSeq:YP_016950.1 RefSeq:YP_026599.1 ProteinModelPortal:Q81ZD5
IntAct:Q81ZD5 DNASU:1086580 EnsemblBacteria:EBBACT00000010670
EnsemblBacteria:EBBACT00000015965 EnsemblBacteria:EBBACT00000023568
GeneID:1086580 GeneID:2815968 GeneID:2848698 KEGG:ban:BA_0334
KEGG:bar:GBAA_0334 KEGG:bat:BAS0319 HOGENOM:HOG000217857
OMA:NTESYCH ProtClustDB:CLSK865525
BioCyc:BANT260799:GJAJ-361-MONOMER
BioCyc:BANT261594:GJ7F-371-MONOMER Uniprot:Q81ZD5
Length = 329
Score = 141 (54.7 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 34/124 (27%), Positives = 65/124 (52%)
Query: 377 GNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEV 436
G+NP + + + E + +D+N+GCP+ + +G GSGL+ R ++ +I +
Sbjct: 78 GDNPEYFRQMSIGMAE-LGFKGIDINMGCPVPNVASRGKGSGLILRPDVAAELIQAA-KA 135
Query: 437 SSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQ 496
LP++VKTR G K+ + +++ + +++H RTRE+ A W+ I + +
Sbjct: 136 GGLPVSVKTRLGF-KELSEWEDWLTHIFKQDIANLSIHLRTREEMSQVDAHWELIPEIKK 194
Query: 497 LCSR 500
L R
Sbjct: 195 LRDR 198
Score = 92 (37.4 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 520 ITLHGRTREQRYTKQADWDYIEKCAQL---CSPAPLYG-NGDILSYEDYTESLKKSPSIS 575
+++H RTRE+ A W+ I + +L +P L NGDI + E +K I
Sbjct: 169 LSIHLRTREEMSQVDAHWELIPEIKKLRDRIAPNTLLTINGDIPDRKTGLELAEKY-GID 227
Query: 576 GVMIGRGALIKPWIFQE 592
GVMIGRG P+ F++
Sbjct: 228 GVMIGRGIFKNPFAFEK 244
Score = 87 (35.7 bits), Expect = 9.0e-06, Sum P(2) = 9.0e-06
Identities = 26/113 (23%), Positives = 53/113 (46%)
Query: 263 LSPLTTVGNLPFRRLCKKWGA-DITCSEMAVATELLKSSPQEWALIKRH----ESEDLFG 317
L+P+ V ++ FR + + G D+ +E + P+ ++ E E
Sbjct: 16 LAPMEDVTDVVFRHVVSEAGRPDVFFTEFTNSDSYCH--PEGMKSVRGRLIFTEDEQPMV 73
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ G+NP + + + E + +D+N+GCP+ + +G GSGL+ R ++
Sbjct: 74 AHIWGDNPEYFRQMSIGMAE-LGFKGIDINMGCPVPNVASRGKGSGLILRPDV 125
>WB|WBGene00016674 [details] [associations]
symbol:C45G9.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05545 OMA:AGPMVRY
GeneTree:ENSGT00550000074907 EMBL:FO080873 PIR:A88449
RefSeq:NP_498078.2 ProteinModelPortal:Q09504 SMR:Q09504
STRING:Q09504 EnsemblMetazoa:C45G9.2 GeneID:183479
KEGG:cel:CELE_C45G9.2 UCSC:C45G9.2 CTD:183479 WormBase:C45G9.2
InParanoid:Q09504 NextBio:921288 Uniprot:Q09504
Length = 284
Score = 108 (43.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 29/110 (26%), Positives = 53/110 (48%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ ++P+VL++ +++ + VD+N GCP + +G GS LL + +L ++
Sbjct: 53 VQFATDDPFVLSEAAEMVYKCSTG--VDLNCGCPKHDVRSKGFGSALLSKPELLADMVRQ 110
Query: 433 MN-EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQR 481
+ +V + I+ D + K G + +T+HGRT QR
Sbjct: 111 TRARIPDPDFSVSLKIRINHDIEKTVDLCRKAEAAGVTHLTVHGRTPSQR 160
Score = 102 (41.0 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 272 LPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGNNPYVLTKC 331
L FR+L + + D+ + M A ++S + + E + VQ ++P+VL++
Sbjct: 7 LAFRQLVRVYDVDVCFTPMIYAKNFIESEKCRSSELSVCEGDSPLIVQFATDDPFVLSEA 66
Query: 332 TQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+++ + VD+N GCP + +G GS LL + L
Sbjct: 67 AEMVYK--CSTGVDLNCGCPKHDVRSKGFGSALLSKPEL 103
Score = 75 (31.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
G + +T+HGRT QR + D + S P+ NG I + E+ L + +
Sbjct: 146 GVTHLTVHGRTPSQR-AEPIDIQALRIVKDSVS-VPIIANGGITTREEAL-FLAEQTGVD 202
Query: 576 GVMIGRGALIKPWIF 590
G+M G L P +F
Sbjct: 203 GIMAANGLLDNPALF 217
>UNIPROTKB|Q884C6 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AE016853
GenomeReviews:AE016853_GR eggNOG:COG0042 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000217854 KO:K05541
RefSeq:NP_791991.1 ProteinModelPortal:Q884C6 GeneID:1183820
KEGG:pst:PSPTO_2169 PATRIC:19995624 OMA:EWIARIQ
ProtClustDB:CLSK867771 BioCyc:PSYR223283:GJIX-2214-MONOMER
Uniprot:Q884C6
Length = 317
Score = 140 (54.3 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 37/152 (24%), Positives = 70/152 (46%)
Query: 351 PIEFIYKQGSG--SGLLQRANL-FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPI 407
P + YK S +G A +QL G++P L + E + +D+N GCP
Sbjct: 42 PAHYFYKYASEFHNGAKTDAGTPLRLQLLGSDPVCLAENAAFACE-LGAPVLDLNFGCPA 100
Query: 408 EFIYKQGSGSGLLQRANILQSVITCMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRD 465
+ + + G+ LL+ +L ++++ + +P+T K R G + + + D
Sbjct: 101 KTVNRSRGGAILLKEPELLHTIVSQVRRAVPKDIPVTAKMRLGYENTDGAL-DCARALAD 159
Query: 466 WGASLITLHGRTREQRYTKQADWDYIEKCAQL 497
GA+ I +H RT+ Y A W++I + ++
Sbjct: 160 GGAAQIVVHARTKVDGYKPPAHWEWIARIQEV 191
Score = 115 (45.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 514 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
D GA+ I +H RT+ Y A W++I + ++ P+ NG+I + ED+ ++
Sbjct: 159 DGGAAQIVVHARTKVDGYKPPAHWEWIARIQEVVK-VPVVANGEIWTVEDWRRC-REICG 216
Query: 574 ISGVMIGRGALIKPWIFQEIKE-KKLFDIYAIVW 606
+MIGRG + +P + ++I +K ++ + W
Sbjct: 217 ARDIMIGRGLVARPDLARQIAAAQKGEEVVPMTW 250
Score = 64 (27.6 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+QL G++P L + E + +D+N GCP + + + G+ LL+ L
Sbjct: 67 LQLLGSDPVCLAENAAFACE-LGAPVLDLNFGCPAKTVNRSRGGAILLKEPEL 118
>UNIPROTKB|Q9KT00 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
KO:K05541 OMA:FYHVARI PIR:D82241 RefSeq:NP_230750.1
ProteinModelPortal:Q9KT00 DNASU:2614375 GeneID:2614375
KEGG:vch:VC1105 PATRIC:20081304 ProtClustDB:CLSK874217
Uniprot:Q9KT00
Length = 323
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/130 (26%), Positives = 63/130 (48%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P+ + + + ++ +D+N GCP + + + G+ LLQ ++ V+
Sbjct: 67 VQLLGQDPHWMAE-NAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVVKA 125
Query: 432 CMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY-TKQADWD 489
C + V + +P++ K R G +D + A +T+H RT+ Y + W
Sbjct: 126 CRDAVPAHIPVSAKIRLG-WEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASEIKWH 184
Query: 490 YIEKCAQLCS 499
YI++ Q CS
Sbjct: 185 YIDQIRQKCS 194
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 517 ASLITLHGRTREQRY-TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
A +T+H RT+ Y + W YI++ Q CS PL NG++ +Y D ++ ++ +
Sbjct: 162 ADELTVHARTKAGGYKASEIKWHYIDQIRQKCS-IPLIANGEVWNYAD-GQACIQTTGVD 219
Query: 576 GVMIGRGALIKPWIFQEIK 594
+M+ RGAL P + +K
Sbjct: 220 SLMVCRGALNVPNLGNVVK 238
Score = 75 (31.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VQL G +P+ + + + ++ +D+N GCP + + + G+ LLQ L
Sbjct: 67 VQLLGQDPHWMAE-NAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPEL 118
>TIGR_CMR|VC_1105 [details] [associations]
symbol:VC_1105 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 KO:K05541 OMA:FYHVARI
PIR:D82241 RefSeq:NP_230750.1 ProteinModelPortal:Q9KT00
DNASU:2614375 GeneID:2614375 KEGG:vch:VC1105 PATRIC:20081304
ProtClustDB:CLSK874217 Uniprot:Q9KT00
Length = 323
Score = 140 (54.3 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 34/130 (26%), Positives = 63/130 (48%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI-T 431
VQL G +P+ + + + ++ +D+N GCP + + + G+ LLQ ++ V+
Sbjct: 67 VQLLGQDPHWMAE-NAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPELIYQVVKA 125
Query: 432 CMNEVSS-LPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY-TKQADWD 489
C + V + +P++ K R G +D + A +T+H RT+ Y + W
Sbjct: 126 CRDAVPAHIPVSAKIRLG-WEDPEDCFEIVDAVAQAKADELTVHARTKAGGYKASEIKWH 184
Query: 490 YIEKCAQLCS 499
YI++ Q CS
Sbjct: 185 YIDQIRQKCS 194
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 517 ASLITLHGRTREQRY-TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
A +T+H RT+ Y + W YI++ Q CS PL NG++ +Y D ++ ++ +
Sbjct: 162 ADELTVHARTKAGGYKASEIKWHYIDQIRQKCS-IPLIANGEVWNYAD-GQACIQTTGVD 219
Query: 576 GVMIGRGALIKPWIFQEIK 594
+M+ RGAL P + +K
Sbjct: 220 SLMVCRGALNVPNLGNVVK 238
Score = 75 (31.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 318 VQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
VQL G +P+ + + + ++ +D+N GCP + + + G+ LLQ L
Sbjct: 67 VQLLGQDPHWMAE-NAIRAAELGAYGIDLNFGCPAKMVNQSKGGAALLQHPEL 118
>UNIPROTKB|Q884G7 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase A" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE016853 GenomeReviews:AE016853_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:NP_791948.1 ProteinModelPortal:Q884G7 GeneID:1183773
KEGG:pst:PSPTO_2126 PATRIC:19995530
BioCyc:PSYR223283:GJIX-2167-MONOMER Uniprot:Q884G7
Length = 336
Score = 118 (46.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/106 (28%), Positives = 53/106 (50%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G+ L C +L E D V++N+GCP + + G+ L+ ++ +
Sbjct: 76 LQLGGSTAAGLAACARLAEAAGY-DEVNLNVGCPSDRVQNNMIGACLMAHPQLVADCVKA 134
Query: 433 MNEVSSLPITVKTRTGIH-KDNNI-IHNFMPKFRDWGASLITLHGR 476
M + +P+TVK R GI+ +D+ + +F+ D G T+H R
Sbjct: 135 MRDAVGIPVTVKHRIGINGRDSYAELCDFVGTVHDAGCQSFTVHAR 180
Score = 66 (28.3 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 507 NFMPKFRDWGASLITLHGRT--------REQRYTKQADWDYIEKCAQLCSPAP---LYGN 555
+F+ D G T+H R +E R +D + AQL + P + N
Sbjct: 162 DFVGTVHDAGCQSFTVHARIAILEGLSPKENRDIPPLRYDVV---AQLKTDFPELEIVLN 218
Query: 556 GDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIV 605
G I + E +E L+ + GVM+GR A P++ ++ +++LF A V
Sbjct: 219 GGIKTLEQCSEHLQ---TFDGVMLGREAYHNPYLLAQV-DQQLFGSVAPV 264
>UNIPROTKB|A6QPA8 [details] [associations]
symbol:DUS4L "DUS4L protein" species:9913 "Bos taurus"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
InterPro:IPR001269 InterPro:IPR013785 InterPro:IPR018517
Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
eggNOG:COG0042 HOGENOM:HOG000203649 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 CTD:11062 HOVERGEN:HBG053313 KO:K05545
OrthoDB:EOG4ZCT4T GeneTree:ENSGT00550000074907 EMBL:DAAA02010587
EMBL:BC149229 IPI:IPI00866854 RefSeq:NP_001095407.1
UniGene:Bt.13512 STRING:A6QPA8 Ensembl:ENSBTAT00000029128
GeneID:511017 KEGG:bta:511017 InParanoid:A6QPA8 OMA:YLENEHK
NextBio:20869728 Uniprot:A6QPA8
Length = 238
Score = 118 (46.6 bits), Expect = 0.00023, P = 0.00023
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ N+ +L+ +++ + +D+N GCP + +G G+ L+ + +++ ++
Sbjct: 86 VQFAANDARLLSDAARIVCPY--ANGIDINCGCPQRWALAEGYGACLINKPELVRDMVKQ 143
Query: 433 M-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ N+V + +V + IH D + K G S IT+HGRT E+R+
Sbjct: 144 VRNQVENPRFSVSIKIRIHDDLTRTVDLCRKAEATGVSWITVHGRTVEERH 194
Score = 102 (41.0 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 24/107 (22%), Positives = 52/107 (48%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M VA + ++S+ + ++ + VQ N
Sbjct: 32 APMVRYSKLSFRTLVRKYDCDLCYTPMIVAADFVRSAKARDSEFTTNQGDCPLIVQFAAN 91
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ +++ + +D+N GCP + +G G+ L+ + L
Sbjct: 92 DARLLSDAARIVCPY--ANGIDINCGCPQRWALAEGYGACLINKPEL 136
Score = 72 (30.4 bits), Expect = 6.8e-06, Sum P(2) = 6.8e-06
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
G S IT+HGRT E+R+ + ++ I+ + S P+ NGDI S ++
Sbjct: 179 GVSWITVHGRTVEERH-QPVHYEAIKIIKESMS-IPIVANGDIRSLKE 224
>UNIPROTKB|Q607T6 [details] [associations]
symbol:MCA1669 "tRNA-dihydrouridine synthase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539 OMA:IPPLDYD
ProtClustDB:PRK11815 TIGRFAMs:TIGR00742 RefSeq:YP_114112.1
ProteinModelPortal:Q607T6 GeneID:3102115 KEGG:mca:MCA1669
PATRIC:22607174 Uniprot:Q607T6
Length = 360
Score = 123 (48.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G++P L +C ++ E + D V++N+GCP + G+ L+ + +
Sbjct: 86 IQLGGSDPEALAECAKIAEFRGF-DEVNLNVGCPSPRVQTGRFGACLMAEPERVADCVRA 144
Query: 433 MNEVSSLPITVKTRTGIH-KDN--NIIHNFMPKFRDWGASLITLHGR 476
M E S+P+TVKTR GI +D+ +++H F+ + G +H R
Sbjct: 145 MCEAVSVPVTVKTRIGIDDRDSYEDLLH-FVTIVAEAGCRTFIVHAR 190
Score = 55 (24.4 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 17/66 (25%), Positives = 27/66 (40%)
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
+E R T +D + + + NG I + ++ L GVMIGR A
Sbjct: 200 KENRQTPPLRYDVVRRLKSELPELAIVLNGGIQTLDEAERHLSWC---DGVMIGRAAYHN 256
Query: 587 PWIFQE 592
P++ E
Sbjct: 257 PYLLAE 262
>UNIPROTKB|I3LP14 [details] [associations]
symbol:DUS4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082
GeneTree:ENSGT00550000074907 OMA:YLENEHK EMBL:FP565643
Ensembl:ENSSSCT00000023658 Uniprot:I3LP14
Length = 237
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
VQ N+ +L+ +++ + +D+N GCP + +G G+ L+ + +++ ++
Sbjct: 88 VQFAANDARLLSDAARIVCPY--ANGIDINCGCPQRWALAEGYGACLINKPELVKDMVKQ 145
Query: 433 M-NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRY 482
+ N+V + +V + IH D + K G S IT+HGRT E+R+
Sbjct: 146 VRNQVENPRFSVSIKIRIHSDLTRTVDLCRKAEATGVSWITVHGRTVEERH 196
Score = 100 (40.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 264 SPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQLCGN 323
+P+ L FR L +K+ D+ + M VA + ++S + ++ + VQ N
Sbjct: 34 APMVRYSKLAFRTLVRKYSCDLCYTPMIVAADFVRSVKARDSEFTTNQGDCPLIVQFAAN 93
Query: 324 NPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRANL 370
+ +L+ +++ + +D+N GCP + +G G+ L+ + L
Sbjct: 94 DARLLSDAARIVCPY--ANGIDINCGCPQRWALAEGYGACLINKPEL 138
Score = 71 (30.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYED 563
G S IT+HGRT E+R+ + ++ I+ + S P+ NGDI S ++
Sbjct: 181 GVSWITVHGRTVEERH-QPVHYEAIKIIKESMS-IPVIANGDIRSLKE 226
>CGD|CAL0003882 [details] [associations]
symbol:SMM1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA]
[GO:0006400 "tRNA modification" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136
CGD:CAL0003882 Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AACQ01000101
EMBL:AACQ01000099 eggNOG:COG0042 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 KO:K05543 RefSeq:XP_714536.1 RefSeq:XP_714632.1
ProteinModelPortal:Q59YG4 STRING:Q59YG4 GeneID:3643710
GeneID:3643778 KEGG:cal:CaO19.1362 KEGG:cal:CaO19.8942
Uniprot:Q59YG4
Length = 433
Score = 111 (44.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 33/123 (26%), Positives = 56/123 (45%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL ++P + + + + VD +D+N GCP F G G+ LL+ + L S++
Sbjct: 86 LQLGSSDPQLAVDAARKVIDD--VDGIDLNCGCPKNFSTHSGMGAELLKTPDKLCSILIN 143
Query: 433 MNEVSSLPITVKTRTGIHKDNNIIH--NFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ E +P I NN N + K G S +T+H RT R + W++
Sbjct: 144 LVEKIGIPNKKSISCKIRLFNNYDQSKNLIEKILQTGISNLTIHCRTPIMRNRQDPVWNF 203
Query: 491 IEK 493
+ K
Sbjct: 204 LPK 206
Score = 68 (29.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSS 300
++ KL L+P+ G LP R L ++G D+ + V ++L+S+
Sbjct: 3 EYANKLCLAPMVRSGELPIRLLSLRYGCDLLWTPELVDKKILQST 47
>UNIPROTKB|Q48A03 [details] [associations]
symbol:CPS_0353 "tRNA-dihydrouridine synthase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 121 (47.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G++ +T+C ++ E Q D V++N+GCP + + G+ L+ ++ +
Sbjct: 75 LQLGGSDVKAMTECAKIAE-QYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQ 133
Query: 433 MNEVSSLPITVKTRTGIHK-DN-NIIHNFMPKFRDWGASLITLHGR 476
M +++P+TVK+R GI D+ +H F+ + +H R
Sbjct: 134 MQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHAR 179
Score = 51 (23.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
++ R D+D + + + NG I ++ + E L+ I GVMIGR
Sbjct: 189 KQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH---IDGVMIGREIYNS 245
Query: 587 PWIFQE 592
P++ +
Sbjct: 246 PYMLAD 251
>TIGR_CMR|CPS_0353 [details] [associations]
symbol:CPS_0353 "TIM-barrel protein, yjbN family"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000259834
KO:K05539 OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_267111.1 ProteinModelPortal:Q48A03 STRING:Q48A03
GeneID:3519427 KEGG:cps:CPS_0353 PATRIC:21464085
BioCyc:CPSY167879:GI48-448-MONOMER Uniprot:Q48A03
Length = 335
Score = 121 (47.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G++ +T+C ++ E Q D V++N+GCP + + G+ L+ ++ +
Sbjct: 75 LQLGGSDVKAMTECAKIAE-QYGYDEVNINVGCPSDRVQNGRFGACLMAEPALVAQCVNQ 133
Query: 433 MNEVSSLPITVKTRTGIHK-DN-NIIHNFMPKFRDWGASLITLHGR 476
M +++P+TVK+R GI D+ +H F+ + +H R
Sbjct: 134 MQSATNIPVTVKSRIGIDDLDSYEFLHTFIEEVSKADCRHFIIHAR 179
Score = 51 (23.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 16/66 (24%), Positives = 29/66 (43%)
Query: 527 REQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSISGVMIGRGALIK 586
++ R D+D + + + NG I ++ + E L+ I GVMIGR
Sbjct: 189 KQNRDVPPLDYDRVYQIKNDFKDLEVSINGGIKTFSEANEHLQH---IDGVMIGREIYNS 245
Query: 587 PWIFQE 592
P++ +
Sbjct: 246 PYMLAD 251
>UNIPROTKB|P33371 [details] [associations]
symbol:dusC "tRNA-dihydrouridine synthase C" species:83333
"Escherichia coli K-12" [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0002943 "tRNA dihydrouridine synthesis"
evidence=IEA;IMP] [GO:0017150 "tRNA dihydrouridine synthase
activity" evidence=IEA;IMP] [GO:0055114 "oxidation-reduction
process" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PIRSF:PIRSF006621 PROSITE:PS01136
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U00007
eggNOG:COG0042 GO:GO:0017150 PANTHER:PTHR11082 PIR:C64982
RefSeq:NP_416645.1 RefSeq:YP_490379.1 ProteinModelPortal:P33371
SMR:P33371 DIP:DIP-12808N IntAct:P33371 PRIDE:P33371
EnsemblBacteria:EBESCT00000002162 EnsemblBacteria:EBESCT00000017846
GeneID:12931463 GeneID:945458 KEGG:ecj:Y75_p2102 KEGG:eco:b2140
PATRIC:32119623 EchoBASE:EB1957 EcoGene:EG12022
HOGENOM:HOG000217854 KO:K05541 OMA:FYHVARI ProtClustDB:PRK10550
BioCyc:EcoCyc:EG12022-MONOMER BioCyc:ECOL316407:JW2128-MONOMER
BioCyc:MetaCyc:EG12022-MONOMER Genevestigator:P33371 Uniprot:P33371
Length = 315
Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
Identities = 44/145 (30%), Positives = 63/145 (43%)
Query: 350 CPIEFIYKQGSGSGLLQRANLFGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEF 409
CP E + SG L R VQL G P L + E + VD+N GCP +
Sbjct: 50 CP-ELQNASRTPSGTLVR-----VQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKT 102
Query: 410 IYKQGSGSGLLQRANILQSVITCMNEV--SSLPITVKTRTGIHKDNNIIHNFMPKFRDWG 467
+ G G+ LL+ ++ M E + LP++VK R G + G
Sbjct: 103 VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFE-IADAVQQAG 161
Query: 468 ASLITLHGRTREQRY-TKQADWDYI 491
A+ + +HGRT+EQ Y + DW I
Sbjct: 162 ATELVVHGRTKEQGYRAEHIDWQAI 186
Score = 109 (43.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 516 GASLITLHGRTREQRY-TKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSI 574
GA+ + +HGRT+EQ Y + DW I Q + P+ NG+I ++ + + S
Sbjct: 161 GATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLN-IPVIANGEIWDWQSAQQCMAIS-GC 218
Query: 575 SGVMIGRGALIKPWIFQEIK 594
VMIGRGAL P + + +K
Sbjct: 219 DAVMIGRGALNIPNLSRVVK 238
Score = 62 (26.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 309 RHESEDLFGVQLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGSGLLQRA 368
R S L VQL G P L + E + VD+N GCP + + G G+ LL+
Sbjct: 58 RTPSGTLVRVQLLGQFPQWLAENAARAVE-LGSWGVDLNCGCPSKTVNGSGGGATLLKDP 116
Query: 369 NL 370
L
Sbjct: 117 EL 118
>UNIPROTKB|J3QLD5 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:AC130462 EMBL:AC040162 GO:GO:0017150
GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000562246 Uniprot:J3QLD5
Length = 208
Score = 115 (45.5 bits), Expect = 0.00032, P = 0.00032
Identities = 26/101 (25%), Positives = 52/101 (51%)
Query: 399 VDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNIIHN 458
+DVN+GCP ++ K G G+ LL + ++ +++ + + + P+T K R ++ + +
Sbjct: 110 IDVNMGCPKQYSTKGGMGAALLSDPDKIEKILSTLVKGTRRPVTCKIRILPSLEDTL--S 167
Query: 459 FMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCS 499
+ + G + I +HGR RE+R + I+ A S
Sbjct: 168 LVKRIERTGIAAIAVHGRKREERPQHPVSCEVIKAIADTLS 208
Score = 112 (44.5 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 38/124 (30%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP ++ K G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKQYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
Score = 47 (21.6 bits), Expect = 7.3e-05, Sum P(2) = 7.3e-05
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCS 548
G + I +HGR RE+R + I+ A S
Sbjct: 176 GIAAIAVHGRKREERPQHPVSCEVIKAIADTLS 208
>ASPGD|ASPL0000038251 [details] [associations]
symbol:AN2967 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 Gene3D:3.20.20.70
GO:GO:0050660 EMBL:BN001306 EMBL:AACD01000051 eggNOG:COG0042
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HOGENOM:HOG000195580
KO:K05543 OrthoDB:EOG4PG98M RefSeq:XP_660571.1
ProteinModelPortal:Q5B913 STRING:Q5B913
EnsemblFungi:CADANIAT00010113 GeneID:2873785 KEGG:ani:AN2967.2
OMA:KEMIMHY Uniprot:Q5B913
Length = 437
Score = 97 (39.2 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 31/124 (25%), Positives = 59/124 (47%)
Query: 379 NPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQR----ANILQSVITCMN 434
NP + + +L+ V+ +DVN GCP F G G+ LL+ +IL++++ +
Sbjct: 110 NPELAVQAGKLVAAD--VNGIDVNSGCPKPFSTSGGMGAALLRTPDKLVSILEALVKEVG 167
Query: 435 EVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKC 494
E + I+VK R + + + + + + G + +T+H RT R ++A D +
Sbjct: 168 EPYQIGISVKIR--LLETPELTESLVSRLVRTGITGLTIHCRTTPMRPRERAIRDQLRMI 225
Query: 495 AQLC 498
C
Sbjct: 226 VSTC 229
Score = 76 (31.8 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 256 DWQGKLYLSPLTTVGNLPFRRLCKKWGADI 285
D++GK+ L+P+ G LP R L K+GAD+
Sbjct: 16 DYRGKVVLAPMVRSGELPSRLLALKYGADL 45
>UNIPROTKB|I3L4Y9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] InterPro:IPR001269 InterPro:IPR013785
InterPro:IPR018517 Pfam:PF01207 PROSITE:PS01136 GO:GO:0005739
Gene3D:3.20.20.70 GO:GO:0050660 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 HGNC:HGNC:26014
Ensembl:ENST00000575677 Bgee:I3L4Y9 Uniprot:I3L4Y9
Length = 158
Score = 112 (44.5 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 38/124 (30%), Positives = 60/124 (48%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEMA---------VATELLKS----SPQ 302
+ KL L+P+ VG LP R L +GADI C E+ V E+L + +P
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEELIDLKMIQCKRVVNEVLSTVDFVAPD 69
Query: 303 EWALIKRHESEDLFGV-QLCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSG 361
+ + + E E V Q+ ++ +L+E +A +DVN+GCP ++ K G G
Sbjct: 70 DRVVFRTCEREQNRVVFQMGTSDAERALAVARLVENDVAG--IDVNMGCPKQYSTKGGMG 127
Query: 362 SGLL 365
+ LL
Sbjct: 128 AALL 131
>ZFIN|ZDB-GENE-030131-6366 [details] [associations]
symbol:zgc:162730 "zgc:162730" species:7955 "Danio
rerio" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
ZFIN:ZDB-GENE-030131-6366 GO:GO:0008270 GO:GO:0003676
HOGENOM:HOG000233479 EMBL:BC139894 IPI:IPI00933596
UniGene:Dr.106159 STRING:A5D6V0 HOVERGEN:HBG105016
InParanoid:A5D6V0 OrthoDB:EOG4PK294 ArrayExpress:A5D6V0
Uniprot:A5D6V0
Length = 336
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 31/91 (34%), Positives = 42/91 (46%)
Query: 66 PTFVTKPEDCYCPFLKDSTLEQ-TCKYGEKCKFVHDKNVF--MKSKPEDISEQCYVFLQH 122
P T P + Y L S E +CKYG KC+F H +N + P+ ++ C F Q
Sbjct: 103 PPLATLPSNRYKTELCRSFQEHGSCKYGAKCQFAHGENELRGLYRHPKYKTQACRTFYQF 162
Query: 123 GYCPMGIACRF---GSSHLDENGGNIVKEDV 150
GYCP G C F S L E +++ V
Sbjct: 163 GYCPYGSRCHFIHEEKSSLSEQNPRQLRQSV 193
>UNIPROTKB|E7EUN9 [details] [associations]
symbol:DUS2L "tRNA-dihydrouridine(20) synthase
[NAD(P)+]-like" species:9606 "Homo sapiens" [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR001159 InterPro:IPR001269
InterPro:IPR013785 Pfam:PF00035 Pfam:PF01207 SMART:SM00358
InterPro:IPR014720 GO:GO:0005737 Gene3D:3.20.20.70 GO:GO:0050660
Gene3D:3.30.160.20 GO:GO:0003725 EMBL:AC130462 EMBL:AC040162
GO:GO:0017150 GO:GO:0002943 PANTHER:PTHR11082 GeneID:54920
HGNC:HGNC:26014 IPI:IPI00909876 RefSeq:NP_001258692.1
ProteinModelPortal:E7EUN9 SMR:E7EUN9 Ensembl:ENST00000432752
UCSC:uc010vkk.2 ArrayExpress:E7EUN9 Bgee:E7EUN9 Uniprot:E7EUN9
Length = 458
Score = 92 (37.4 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 28/84 (33%), Positives = 41/84 (48%)
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGD----ILSYEDYTESLKKS 571
G + I +HGR RE+R + I+ A S P+ NG I Y D E +++
Sbjct: 141 GIAAIAVHGRKREERPQHPVSCEVIKAIADTLS-IPVIANGGSHDHIQQYSDI-EDFRQA 198
Query: 572 PSISGVMIGRGALIKPWIFQEIKE 595
+ S VM+ R A+ P IF +KE
Sbjct: 199 TAASSVMVARAAMWNPSIF--LKE 220
Score = 77 (32.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 257 WQGKLYLSPLTTVGNLPFRRLCKKWGADIT-CSEM 290
+ KL L+P+ VG LP R L +GADI C E+
Sbjct: 10 YHNKLILAPMVRVGTLPMRLLALDYGADIVYCEEL 44
>POMBASE|SPBC1718.07c [details] [associations]
symbol:zfs1 "CCCH tandem zinc finger protein, human
Tristetraprolin homolog Zfs1, involved in mRNA catabolism"
species:4896 "Schizosaccharomyces pombe" [GO:0000750
"pheromone-dependent signal transduction involved in conjugation
with cellular fusion" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic process"
evidence=IMP] [GO:0007093 "mitotic cell cycle checkpoint"
evidence=IMP] [GO:0007094 "mitotic spindle assembly checkpoint"
evidence=IGI] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IMP] [GO:0031030 "negative regulation of septation
initiation signaling cascade" evidence=IGI] [GO:0031137 "regulation
of conjugation with cellular fusion" evidence=IGI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045839
"negative regulation of mitosis" evidence=IMP] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 PomBase:SPBC1718.07c
GO:GO:0005829 GO:GO:0005634 GO:GO:0051301 GO:GO:0007094
GO:GO:0031030 GO:GO:0046872 EMBL:CU329671 GO:GO:0008270
GenomeReviews:CU329671_GR GO:GO:0000750 GO:GO:0006402 GO:GO:0031137
eggNOG:COG5063 GO:GO:0010972 OrthoDB:EOG4W3WXK GO:GO:0035925
EMBL:D49913 PIR:T50335 RefSeq:NP_596453.1 ProteinModelPortal:P47979
SMR:P47979 MINT:MINT-4690404 STRING:P47979
EnsemblFungi:SPBC1718.07c.1 GeneID:2539958 KEGG:spo:SPBC1718.07c
NextBio:20801101 Uniprot:P47979
Length = 404
Score = 122 (48.0 bits), Expect = 0.00026, P = 0.00026
Identities = 33/92 (35%), Positives = 46/92 (50%)
Query: 65 GPTFVTKPEDCYCPFLKDSTLEQTCKYGEKCKFVHDKNVFMKSKPEDI---SEQCYVFLQ 121
G + K E C K+ + TC+YG KC+F H N +K P SE+C F+
Sbjct: 322 GKRALYKTEPC-----KNWQISGTCRYGSKCQFAHG-NQELKEPPRHPKYKSERCRSFMM 375
Query: 122 HGYCPMGIACRFGSSHLDENGGNIVKEDVLKE 153
+GYCP G+ C F H DE+ N K +K+
Sbjct: 376 YGYCPYGLRCCF--LH-DES--NAQKSATIKQ 402
>UNIPROTKB|H0YGW8 [details] [associations]
symbol:DUS1L "tRNA-dihydrouridine(16/17) synthase
[NAD(P)(+)]-like" species:9606 "Homo sapiens" [GO:0017150 "tRNA
dihydrouridine synthase activity" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] InterPro:IPR001269
InterPro:IPR013785 Pfam:PF01207 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:AC135056 HGNC:HGNC:30086 GO:GO:0017150 GO:GO:0002943
PANTHER:PTHR11082 Ensembl:ENST00000538833 Uniprot:H0YGW8
Length = 298
Score = 117 (46.2 bits), Expect = 0.00053, P = 0.00053
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 516 GASLITLHGRTREQR--YTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPS 573
G L+T+HGRT+EQ+ + A W++I K + P++ NG+I +D L+ +
Sbjct: 36 GCQLLTVHGRTKEQKGPLSGAASWEHI-KAVRKAVAIPVFANGNIQCLQDVERCLRDT-G 93
Query: 574 ISGVMIGRGALIKPWIFQ 591
+ GVM G L P +F+
Sbjct: 94 VQGVMSAEGNLHNPALFE 111
>UNIPROTKB|Q0C5H0 [details] [associations]
symbol:dusA "tRNA-dihydrouridine synthase" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0002943 "tRNA dihydrouridine
synthesis" evidence=ISS] [GO:0006400 "tRNA modification"
evidence=ISS] [GO:0017150 "tRNA dihydrouridine synthase activity"
evidence=ISS] InterPro:IPR001269 InterPro:IPR004653
InterPro:IPR013785 InterPro:IPR018517 Pfam:PF01207
PIRSF:PIRSF006621 PROSITE:PS01136 Gene3D:3.20.20.70 GO:GO:0050660
EMBL:CP000158 GenomeReviews:CP000158_GR eggNOG:COG0042
GO:GO:0017150 PANTHER:PTHR11082 HOGENOM:HOG000259834 KO:K05539
OMA:IPPLDYD ProtClustDB:PRK11815 TIGRFAMs:TIGR00742
RefSeq:YP_759023.1 ProteinModelPortal:Q0C5H0 STRING:Q0C5H0
GeneID:4288047 KEGG:hne:HNE_0293 PATRIC:32213376
BioCyc:HNEP228405:GI69-337-MONOMER Uniprot:Q0C5H0
Length = 328
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
Identities = 30/106 (28%), Positives = 50/106 (47%)
Query: 373 VQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITC 432
+QL G+ P L + ++ E D V++N GCP E + G+ L+ +++ +
Sbjct: 65 LQLGGSEPGKLAEAARIAEGYGY-DEVNLNCGCPSERVQSGAFGACLMAEPDLVADCVAA 123
Query: 433 MNEVSSLPITVKTRTGIHK--DNNIIHNFMPKFRDWGASLITLHGR 476
M S+P+TVK R I + F+ K G S+ T+H R
Sbjct: 124 MRAAVSIPVTVKNRIAIDDLPARETLFTFIEKVSVAGCSVFTVHAR 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.419 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 611 587 0.00083 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 121
No. of states in DFA: 620 (66 KB)
Total size of DFA: 375 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:04
No. of threads or processors used: 24
Search cpu time: 53.30u 0.11s 53.41t Elapsed: 00:00:21
Total cpu time: 53.34u 0.11s 53.45t Elapsed: 00:00:25
Start: Thu Aug 15 11:15:50 2013 End: Thu Aug 15 11:16:15 2013
WARNINGS ISSUED: 1