RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9514
(611 letters)
>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096
{Thermotoga maritima [TaxId: 2336]}
Length = 305
Score = 76.2 bits (186), Expect = 9e-16
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 260 KLYLSPLTTVGNLPFRRLCKKWGADITCSEMAVATELLKSSPQEWALIKRHESEDLFGVQ 319
K+ L+P+ + FR L +WGAD SEM A L +S + L+ E VQ
Sbjct: 2 KVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELL-PQPHERNVAVQ 60
Query: 320 LCGNNPYVLTKCTQLLEEQMAVDFVDVNLGCPIEFIYKQGSGS 362
+ G+ P L++ ++L ++D+N GCP+ + K+G+G
Sbjct: 61 IFGSEPNELSEAARIL--SEKYKWIDLNAGCPVRKVVKEGAGG 101
Score = 44.2 bits (103), Expect = 2e-05
Identities = 34/145 (23%), Positives = 64/145 (44%), Gaps = 7/145 (4%)
Query: 371 FGVQLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVI 430
VQ+ G+ P L++ ++L ++D+N GCP+ + K+G+G LL+ + ++
Sbjct: 57 VAVQIFGSEPNELSEAARIL--SEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIV 114
Query: 431 TCMNEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDY 490
+ + S +VKTR G K+ + G + +H RT Q +T +A+W
Sbjct: 115 RELRKSVSGKFSVKTRLGWEKNEV--EEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKA 172
Query: 491 IEKCAQLCSRDNNIIHNFMPKFRDW 515
+ L R + + D
Sbjct: 173 ---LSVLEKRIPTFVSGDIFTPEDA 194
Score = 41.9 bits (97), Expect = 1e-04
Identities = 32/160 (20%), Positives = 62/160 (38%), Gaps = 5/160 (3%)
Query: 452 DNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIE-KCAQLCSRDNNIIHNFMP 510
D N ++ + R + + + N +
Sbjct: 84 DLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKNEVEEIYR 143
Query: 511 KFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKK 570
+ G + +H RT Q +T +A+W + L P + +GDI + ED +L++
Sbjct: 144 ILVEEGVDEVFIHTRTVVQSFTGRAEWKA---LSVLEKRIPTFVSGDIFTPEDAKRALEE 200
Query: 571 SPSISGVMIGRGALIKPWIFQEIKEKKLFDIYAIVWKWRY 610
S G+++ RGA+ +PWIF++IK+ Y+ +
Sbjct: 201 S-GCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEI 239
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
lactis, isozyme B [TaxId: 1358]}
Length = 311
Score = 52.3 bits (124), Expect = 6e-08
Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 40/223 (17%)
Query: 374 QLCGNNPYVLTKCTQLLEEQMVVDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCM 433
+ G+ + + V +++N+ CP + G + +++
Sbjct: 104 NVAGSEEADYVAVCAKIGDAANVKAIELNISCP----NVKHGGQAFGTDPEVAAALVKAC 159
Query: 434 NEVSSLPITVKTRTGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEK 493
VS +P+ VK + D I + G ++I R T+Q
Sbjct: 160 KAVSKVPLYVKLSPNVT-DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILAN--- 215
Query: 494 CAQLCSRDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLY 553
K I + AQ P+
Sbjct: 216 -----------------------------ITGGLSGPAIKPVALKLIHQVAQDVDI-PII 245
Query: 554 GNGDILSYEDYTESLKKSPSISGVMIGRGALIKPWIFQEIKEK 596
G G + + +D E S V +G P++ +I +K
Sbjct: 246 GMGGVANAQDVLEMYMAG--ASAVAVGTANFADPFVCPKIIDK 286
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain
4 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 312
Score = 43.8 bits (102), Expect = 3e-05
Identities = 26/201 (12%), Positives = 55/201 (27%), Gaps = 31/201 (15%)
Query: 396 VDFVDVNLGCPIEFIYKQGSGSGLLQRANILQSVITCMNEVSSLPITVKTRTGIHKDNNI 455
D +++NL CP + + Q +++++ + + +P K + +I
Sbjct: 130 ADALELNLSCPHGMGERGMGLA-CGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSI 188
Query: 456 IHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDW 515
D + T+ G + +
Sbjct: 189 ARAAKEGGADGVTATNTVSGL--------------------------MGLKADGTPWPAV 222
Query: 516 GASLITLHGRTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDILSYEDYTESLKKSPSIS 575
GA T +G A + A+ P+ G I S E + L S
Sbjct: 223 GAGKRTTYGGVSGTAIRPIA-LRAVTTIARALPGFPILATGGIDSAESGLQFLHSGA--S 279
Query: 576 GVMIGRGALIK-PWIFQEIKE 595
+ + + + Q+
Sbjct: 280 VLQVCSAVQNQDFTVIQDYCT 300
>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 28.5 bits (64), Expect = 0.17
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 113 SEQCYVFLQHGYCPMGIACRF 133
+E C F + G C G C+F
Sbjct: 6 TELCRPFEESGTCKYGEKCQF 26
Score = 26.2 bits (58), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 88 TCKYGEKCKFVHDKN 102
TCKYGEKC+F H +
Sbjct: 17 TCKYGEKCQFAHGFH 31
>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 28.2 bits (63), Expect = 0.25
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 113 SEQCYVFLQHGYCPMGIACRF 133
+E C + + G C G C+F
Sbjct: 9 TELCRTYSESGRCRYGAKCQF 29
Score = 26.2 bits (58), Expect = 1.4
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 88 TCKYGEKCKFVHDKN 102
C+YG KC+F H
Sbjct: 20 RCRYGAKCQFAHGLG 34
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 34
Score = 27.7 bits (62), Expect = 0.32
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 88 TCKYGEKCKFVHDKN 102
C YG +C F+H+ +
Sbjct: 19 FCPYGPRCHFIHNAD 33
Score = 27.3 bits (61), Expect = 0.43
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 113 SEQCYVFLQHGYCPMGIACRF 133
+E C F G+CP G C F
Sbjct: 8 TELCRTFHTIGFCPYGPRCHF 28
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
coli [TaxId: 562]}
Length = 242
Score = 30.4 bits (68), Expect = 0.48
Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 4/118 (3%)
Query: 465 DWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIHNFMPKFRDWGASLITLHG 524
GA IT+H R + T + + + + + + + L
Sbjct: 35 QAGADGITVHLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVP 94
Query: 525 RTREQRYTKQADWDYIEKCAQLCSPAPLYGNGDI---LSYEDYTESLKKSPSISGVMI 579
R++ T+ D + ++ + I L + E +K + + I
Sbjct: 95 EKRQEVTTEGG-LDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFI 151
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 131
Score = 26.2 bits (57), Expect = 7.8
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 447 TGIHKDNNIIHNFMPKFRDWGASLITLHGRTREQRYTKQADWDYIEKCAQLCSRDNNIIH 506
T + ++ H F + G S+ +T +T Y C C H
Sbjct: 66 TNLDMVEDVTHGFC--MVNHGVSMEISPQQTASVTFTAGKPGVYWYYCNWFCHAL----H 119
Query: 507 NFMP 510
M
Sbjct: 120 MEMV 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.414
Gapped
Lambda K H
0.267 0.0662 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,376,176
Number of extensions: 115839
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 18
Length of query: 611
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 520
Effective length of database: 1,158,166
Effective search space: 602246320
Effective search space used: 602246320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)