BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9517
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain
          Length = 405

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 20  LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
           +TG S   P +GF AL     I +     D  +   LPS  TC N L LP Y S E +R 
Sbjct: 331 VTGTSKV-PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRH 389

Query: 80  KLRLAAQEGQHSFHLS 95
            L LA QE    F L+
Sbjct: 390 MLLLAIQEASEGFGLA 405


>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
           Huwe1
 pdb|3G1N|B Chain B, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase
           Huwe1
          Length = 388

 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 20  LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
           +TG S   P +GF AL     I +     D  +   LPS  TC N L LP Y S E +R 
Sbjct: 314 VTGTSKV-PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRH 372

Query: 80  KLRLAAQEGQHSFHLS 95
            L LA QE    F L+
Sbjct: 373 MLLLAIQECSEGFGLA 388


>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation
           Mediated By The Wwp1 Hect Domain E3 Ligase
          Length = 374

 Score = 36.6 bits (83), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 50  LAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
           +  D +LP   TC N L LP Y S E +++KL  A +E +
Sbjct: 335 VGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374


>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
           Hect Domain
 pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5
           Hect Domain
          Length = 118

 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 53  DGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSF 92
           D  LP+  TC++ L +P YSS ++++QKL LA +     F
Sbjct: 78  DQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGF 117


>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within
           The Catalytic Domain Of A Hect Ubiquitin Ligase
          Length = 429

 Score = 35.0 bits (79), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 19/32 (59%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
           LP   TC N + LP Y   + M+QKL LA +E
Sbjct: 391 LPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE 422


>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin
           Ligase
          Length = 398

 Score = 35.0 bits (79), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 50  LAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
           +  + +LP   TC N L LP Y S E +++KL  A +E +
Sbjct: 354 VGKENWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 393


>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
           Anchoring The E2 To The Hect Domain
          Length = 380

 Score = 33.9 bits (76), Expect = 0.026,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 28  PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
           P +GF+AL         T     A    LP   TC N + +P Y S E + +KL  A +E
Sbjct: 314 PLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE 373


>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
 pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
 pdb|2XBF|A Chain A, Nedd4 Hect Structure
          Length = 386

 Score = 33.1 bits (74), Expect = 0.038,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 19/34 (55%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
           LP   TC N L LP Y S E +  KL++A +  Q
Sbjct: 347 LPRAHTCFNRLDLPPYESFEELWDKLQMAIENTQ 380


>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1C4Z|B Chain B, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1C4Z|C Chain C, Structure Of E6ap: Insights Into Ubiquitination Pathway
 pdb|1D5F|A Chain A, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
 pdb|1D5F|B Chain B, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
 pdb|1D5F|C Chain C, Structure Of An E6ap-Ubch7 Complex: Insights Into The
           Ubiquitination Pathway
          Length = 358

 Score = 32.7 bits (73), Expect = 0.055,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKL 81
           LP+  TC N L LP+YSS E ++++L
Sbjct: 320 LPTSHTCFNVLLLPEYSSKEKLKERL 345


>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
          Length = 392

 Score = 32.3 bits (72), Expect = 0.060,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQ 86
           LP   TC N L LP Y + E +R+KL  A +
Sbjct: 361 LPRAHTCFNRLDLPPYETFEDLREKLLXAVE 391


>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
 pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
          Length = 385

 Score = 32.3 bits (72), Expect = 0.071,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
           LP   T  N L LP Y + E +R+KL +A +  Q
Sbjct: 346 LPRAHTAFNRLDLPPYETFEDLREKLLMAVENAQ 379


>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
 pdb|3JW0|D Chain D, E2~ubiquitin-Hect
          Length = 385

 Score = 32.0 bits (71), Expect = 0.082,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 56  LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
           LP   T  N L LP Y + E +R+KL +A +  Q
Sbjct: 346 LPRAHTSFNRLDLPPYETFEDLREKLLMAVENAQ 379


>pdb|2P0K|A Chain A, Crystal Structure Of Scmh1
          Length = 212

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 1  MEVLSPRNTSSHTIQVVIALTG 22
          +E   PRNT+S  I  V+ LTG
Sbjct: 38 LEAQDPRNTTSTCIATVVGLTG 59


>pdb|2VVW|A Chain A, Structure Of Vaccinia Virus Protein A52
 pdb|2VVW|B Chain B, Structure Of Vaccinia Virus Protein A52
 pdb|2VVX|A Chain A, Structure Of Vaccinia Virus Protein A52
 pdb|2VVX|B Chain B, Structure Of Vaccinia Virus Protein A52
          Length = 162

 Score = 26.9 bits (58), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 17/22 (77%)

Query: 71 YSSVEVMRQKLRLAAQEGQHSF 92
          + ++E ++QKLRL ++EG  +F
Sbjct: 59 FGTIEELKQKLRLNSEEGADNF 80


>pdb|4IYL|A Chain A, 30s Ribosomal Protein S15 From Campylobacter Jejuni
          Length = 93

 Score = 26.6 bits (57), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%)

Query: 6  PRNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNY 65
          P +T S  +QV + LT R           L+  L I +K F S L     +      ++Y
Sbjct: 22 PGDTGSTEVQVAL-LTAR--------IAELTEHLKIYKKDFSSRLGLLKLVGQRKRLLSY 72

Query: 66 LKLPDYSS 73
          LK  DY+S
Sbjct: 73 LKRKDYNS 80


>pdb|3LFM|A Chain A, Crystal Structure Of The Fat Mass And Obesity Associated
           (Fto) Protein Reveals Basis For Its Substrate
           Specificity
          Length = 495

 Score = 25.4 bits (54), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 8/44 (18%)

Query: 44  KTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
           K  E+++AA         C  +LKL DY  +E ++    LAA+E
Sbjct: 116 KHTEAEIAA--------ACETFLKLNDYLQIETIQALEELAAKE 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,564,093
Number of Sequences: 62578
Number of extensions: 82918
Number of successful extensions: 150
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 16
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)