BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9517
(95 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14669|TRIPC_HUMAN E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1
SV=1
Length = 1992
Score = 112 bits (281), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFES D FLPSVMTCVNYLKLPDYSS+E+MR+KL +AA+E
Sbjct: 1925 PVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAARE 1984
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 1985 GQQSFHLS 1992
>sp|F1RCR6|TRIPC_DANRE E3 ubiquitin-protein ligase TRIP12 OS=Danio rerio GN=trip12 PE=2 SV=1
Length = 2026
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFES D FLPSVMTCVNYLKLPDYSS+E+MR+KL +AA+E
Sbjct: 1959 PVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAARE 2018
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 2019 GQQSFHLS 2026
>sp|E1B7Q7|TRIPC_BOVIN E3 ubiquitin-protein ligase TRIP12 OS=Bos taurus GN=TRIP12 PE=2 SV=2
Length = 1992
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 59/68 (86%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFES D FLPSVMTCVNYLKLPDYSS+E+MR+KL +AA+E
Sbjct: 1925 PVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSLEIMREKLLMAARE 1984
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 1985 GQQSFHLS 1992
>sp|F1LP64|TRIPC_RAT E3 ubiquitin-protein ligase TRIP12 OS=Rattus norvegicus GN=Trip12
PE=2 SV=1
Length = 2025
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 58/68 (85%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFES D FLPSVMTCVNYLKLPDYSS+E+MR KL +AA+E
Sbjct: 1958 PVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIEIMRDKLLIAARE 2017
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 2018 GQQSFHLS 2025
>sp|G5E870|TRIPC_MOUSE E3 ubiquitin-protein ligase TRIP12 OS=Mus musculus GN=Trip12 PE=1
SV=1
Length = 2025
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 58/68 (85%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFES D FLPSVMTCVNYLKLPDYSS+++MR KL +AA+E
Sbjct: 1958 PVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYSSIDIMRDKLLIAARE 2017
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 2018 GQQSFHLS 2025
>sp|B4F6W9|TRIPC_XENTR E3 ubiquitin-protein ligase TRIP12 OS=Xenopus tropicalis GN=trip12
PE=2 SV=1
Length = 2056
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 58/68 (85%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GFR+L+PPLTIVRKTFE+ D FLPSVMTCVNYLKLPDYSS++ MR+KL +AA+E
Sbjct: 1989 PVGGFRSLNPPLTIVRKTFEATENPDDFLPSVMTCVNYLKLPDYSSIDNMREKLLMAARE 2048
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 2049 GQQSFHLS 2056
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC12B10.01c PE=3 SV=2
Length = 1647
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 48/68 (70%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF L+PPLT+VR+ E D +LPSVMTCVNYLKLP+YSS EV+ +L A E
Sbjct: 1580 PIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILE 1639
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 1640 GQGSFHLS 1647
>sp|P33202|UFD4_YEAST Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD4 PE=1 SV=1
Length = 1483
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 39/76 (51%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
LTG P GF++L+P T+V K E L AD +LPSVMTC NYLKLP Y+S ++MR
Sbjct: 1409 LTGSPKL-PIGGFKSLNPKFTVVLKHAEDGLTADEYLPSVMTCANYLKLPKYTSKDIMRS 1467
Query: 80 KLRLAAQEGQHSFHLS 95
+L A +EG +F LS
Sbjct: 1468 RLCQAIEEGAGAFLLS 1483
>sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=1
SV=1
Length = 1502
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P G +LSP LTIVRK SD ++D LPSVMTC NYLKLP YSS E M++KL A E
Sbjct: 1437 PHGGLASLSPKLTIVRK-HGSD-SSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITE 1494
Query: 88 GQHSFHLS 95
GQ SFHLS
Sbjct: 1495 GQGSFHLS 1502
>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1
SV=1
Length = 1888
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 28 PSRGFRALSPPLTIVRKTFESDL----------AADGFLPSVMTCVNYLKLPDYSSVEVM 77
P G L+P LTIVRK + AD LPSVMTC NYLKLP YS+ E+M
Sbjct: 1811 PPGGLAVLNPKLTIVRKHSSTSSAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIM 1870
Query: 78 RQKLRLAAQEGQHSFHLS 95
+KL A EGQ SF LS
Sbjct: 1871 YKKLLYAINEGQGSFDLS 1888
>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1
SV=2
Length = 2618
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P G L P LT+VRK A D PSV TCV+YLKLP+YSS E+MR++L A E
Sbjct: 2557 PPGGLANLHPRLTVVRKVD----ATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2612
Query: 88 GQHSFHLS 95
FHL+
Sbjct: 2613 --KGFHLN 2618
>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1
SV=3
Length = 2610
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P G L P LT+VRK A D PSV TCV+YLKLP+YSS E+MR++L A E
Sbjct: 2549 PPGGLANLHPRLTVVRKVD----ATDASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2604
Query: 88 GQHSFHLS 95
FHL+
Sbjct: 2605 --KGFHLN 2610
>sp|Q03280|TOM1_YEAST E3 ubiquitin-protein ligase TOM1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=TOM1 PE=1 SV=1
Length = 3268
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF+ LS + + + D + LPS TC N L LP Y S E +R
Sbjct: 3194 VTGTSKV-PLNGFKELSGVNGVCKFSIHRDFGSSERLPSSHTCFNQLNLPPYESYETLRG 3252
Query: 80 KLRLAAQEGQHSFHLS 95
L LA EG F L+
Sbjct: 3253 SLLLAINEGHEGFGLA 3268
>sp|Q756G2|TOM1_ASHGO Probable E3 ubiquitin-protein ligase TOM1 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=TOM1 PE=3 SV=2
Length = 3258
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 33/68 (48%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ LS I + + D + LPS TC N L LP Y S E +R L LA E
Sbjct: 3191 PLNGFKELSGVNGISKFSIHRDYGSIDRLPSSHTCFNQLDLPAYDSYETLRGSLLLAINE 3250
Query: 88 GQHSFHLS 95
G F ++
Sbjct: 3251 GHEGFGIA 3258
>sp|P53119|HUL5_YEAST Probable E3 ubiquitin-protein ligase HUL5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HUL5 PE=1
SV=1
Length = 910
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P +GF+AL P I E LP+ TCVN LKLPDY + ++R+KL A
Sbjct: 849 PLQGFKALDPKFGIRNAGTEKYR-----LPTASTCVNLLKLPDYRNKTILREKLLYAINS 903
Query: 88 GQHSFHLS 95
G F LS
Sbjct: 904 GAR-FDLS 910
>sp|P51593|HUWE1_RAT E3 ubiquitin-protein ligase HUWE1 (Fragment) OS=Rattus norvegicus
GN=Huwe1 PE=1 SV=2
Length = 322
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P +GF AL I + D + LPS TC N L LP Y S E +R
Sbjct: 248 VTGTSKV-PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRH 306
Query: 80 KLRLAAQEGQHSFHLS 95
L LA QE F L+
Sbjct: 307 MLLLAIQECSEGFGLA 322
>sp|Q7Z6Z7|HUWE1_HUMAN E3 ubiquitin-protein ligase HUWE1 OS=Homo sapiens GN=HUWE1 PE=1 SV=3
Length = 4374
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P +GF AL I + D + LPS TC N L LP Y S E +R
Sbjct: 4300 VTGTSKV-PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRH 4358
Query: 80 KLRLAAQEGQHSFHLS 95
L LA QE F L+
Sbjct: 4359 MLLLAIQECSEGFGLA 4374
>sp|Q7TMY8|HUWE1_MOUSE E3 ubiquitin-protein ligase HUWE1 OS=Mus musculus GN=Huwe1 PE=1 SV=5
Length = 4377
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P +GF AL I + D + LPS TC N L LP Y S E +R
Sbjct: 4303 VTGTSKV-PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRH 4361
Query: 80 KLRLAAQEGQHSFHLS 95
L LA QE F L+
Sbjct: 4362 MLLLAIQECSEGFGLA 4377
>sp|Q1K9C4|YFK7_SCHPO Probable E3 ubiquitin protein ligase C167.07c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC167.07c PE=2 SV=1
Length = 1029
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+AL P I R E + LP+ TCVN LKLP YS+ + +R KL A +
Sbjct: 968 PILGFKALMPSFCI-RVNGEDETR----LPTASTCVNLLKLPMYSTKQTLRDKLLTAVRS 1022
Query: 88 G 88
G
Sbjct: 1023 G 1023
>sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5
PE=1 SV=1
Length = 873
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 26 FNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAA 85
F P GFR LS L I R +E A+ LP TC L +P Y ++ +M Q+LRL A
Sbjct: 808 FVPVEGFRGLSSKLYIYR-LYE----ANDRLPLSHTCFYRLCIPRYPTITLMEQRLRLIA 862
Query: 86 QE 87
Q+
Sbjct: 863 QD 864
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1
SV=3
Length = 3681
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF+AL R A LPS TC N L LP+Y S E +++
Sbjct: 3607 VTGTSKV-PLEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQE 3665
Query: 80 KLRLAAQEGQHSF 92
+L LA E F
Sbjct: 3666 RLLLAIHEASEGF 3678
>sp|Q8CHG5|K0317_MOUSE Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2
Length = 823
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 21 TGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQK 80
TG S P GF AL P I+ S L P+ TC N L LP Y S E + +
Sbjct: 756 TGSSQLPPG-GFAALCPSFQIIAAPTHSTL------PTAHTCFNQLCLPTYDSYEEVHRM 808
Query: 81 LRLAAQEGQHSF 92
L+LA EG F
Sbjct: 809 LQLAISEGCEGF 820
>sp|O15033|K0317_HUMAN Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3
Length = 823
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 21 TGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQK 80
TG S P GF AL P I+ S L P+ TC N L LP Y S E + +
Sbjct: 756 TGSSQLPPG-GFAALCPSFQIIAAPTHSTL------PTAHTCFNQLCLPTYDSYEEVHRM 808
Query: 81 LRLAAQEGQHSF 92
L+LA EG F
Sbjct: 809 LQLAISEGCEGF 820
>sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana GN=UPL6 PE=2
SV=1
Length = 1029
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L P I R + + LP+ TC+N LKLP Y S E++ KL + A
Sbjct: 963 PLLGFKYLEPAFCIQRAAGSASNESVDRLPTSATCMNLLKLPPYQSKELLETKL-MYAIS 1021
Query: 88 GQHSFHLS 95
+ F LS
Sbjct: 1022 AEAGFDLS 1029
>sp|Q9P4Z1|TOM1_NEUCR E3 ubiquitin-protein ligase TOM1-like OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=B11B22.010 PE=3 SV=3
Length = 4026
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF+ L + R D + LPS TC N L LP+Y + E +R
Sbjct: 3952 VTGTSKV-PLNGFKELEGMNGVSRFNIHRDYGSKDRLPSSHTCFNQLDLPEYENYETLRS 4010
Query: 80 KLRLAAQEGQHSF 92
+L A G F
Sbjct: 4011 QLLKAITAGSDYF 4023
>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabidopsis thaliana GN=UPL7 PE=2
SV=1
Length = 1142
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 28 PSRGFRALSPPLTIVRKTFESDL-AADGF-----LPSVMTCVNYLKLPDYSSVEVMRQKL 81
P GF+ L P I + + ++ L AA G LPS TC N LKLP Y MR+KL
Sbjct: 1070 PLLGFKYLQPTFIIHKVSCDTSLWAAIGGQDVERLPSASTCYNTLKLPTYKRASTMREKL 1129
Query: 82 RLAAQEGQHSFHLS 95
L A F LS
Sbjct: 1130 -LYAITSNAGFELS 1142
>sp|Q8H0T4|UPL2_ARATH E3 ubiquitin-protein ligase UPL2 OS=Arabidopsis thaliana GN=UPL2 PE=1
SV=3
Length = 3658
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF+AL R + LPS TC N L LP+Y S E +++
Sbjct: 3584 VTGTSKV-PLEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQE 3642
Query: 80 KLRLAAQEGQHSF 92
+L LA E F
Sbjct: 3643 RLLLAIHEANEGF 3655
>sp|Q7Z3V4|UBE3B_HUMAN Ubiquitin-protein ligase E3B OS=Homo sapiens GN=UBE3B PE=1 SV=3
Length = 1068
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLA 84
G LP+ TC N LKLP+YS V+R+KLR A
Sbjct: 1028 GRLPTSSTCFNLLKLPNYSKKSVLREKLRYA 1058
>sp|Q9ES34|UBE3B_MOUSE Ubiquitin-protein ligase E3B OS=Mus musculus GN=Ube3b PE=2 SV=3
Length = 1070
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLA 84
G LP+ TC N LKLP+YS V+R+KLR A
Sbjct: 1030 GRLPTSSTCFNLLKLPNYSKKSVLREKLRYA 1060
>sp|F8W2M1|HACE1_DANRE E3 ubiquitin-protein ligase HACE1 OS=Danio rerio GN=hace1 PE=3 SV=2
Length = 904
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S +V+R +L +A G + + ++
Sbjct: 863 NLLPTSSTCINMLKLPEYPSKDVLRDRLLVALHCGSYGYTMA 904
>sp|F1N6G5|HACE1_BOVIN E3 ubiquitin-protein ligase HACE1 OS=Bos taurus GN=HACE1 PE=3 SV=3
Length = 909
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 869 LLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909
>sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=1
SV=1
Length = 909
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 869 LLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909
>sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1
SV=2
Length = 909
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 869 LLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909
>sp|D3ZBM7|HACE1_RAT E3 ubiquitin-protein ligase HACE1 OS=Rattus norvegicus GN=Hace1
PE=2 SV=1
Length = 909
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 869 LLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 909
>sp|E1C656|HACE1_CHICK E3 ubiquitin-protein ligase HACE1 OS=Gallus gallus GN=HACE1 PE=2
SV=1
Length = 942
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 901 NLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 942
>sp|Q28BK1|HACE1_XENTR E3 ubiquitin-protein ligase HACE1 OS=Xenopus tropicalis GN=hace1
PE=2 SV=1
Length = 912
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 872 LLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 912
>sp|Q6DCL5|HACE1_XENLA E3 ubiquitin-protein ligase HACE1 OS=Xenopus laevis GN=hace1 PE=2
SV=1
Length = 944
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95
LP+ TC+N LKLP+Y S E+++ +L +A G + + ++
Sbjct: 903 NLLPTSSTCINMLKLPEYPSKEILKDRLLVALHCGSYGYTMA 944
>sp|Q08CZ0|UBE3B_XENTR Ubiquitin-protein ligase E3B OS=Xenopus tropicalis GN=ube3b PE=2 SV=1
Length = 1072
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 54 GFLPSVMTCVNYLKLPDYSSVEVMRQKLRLA 84
G LP+ TC N LKLP+YS ++R+KLR A
Sbjct: 1032 GRLPTSSTCFNLLKLPNYSKKGILREKLRYA 1062
>sp|O14326|PUB3_SCHPO E3 ubiquitin-protein ligase pub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pub3 PE=2 SV=1
Length = 786
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQ 86
P GFR L + T E D LP TC N L LPDY S + + +KL LA +
Sbjct: 721 PVNGFRDLQGSDGPRKFTIEKAGTPDQ-LPVAHTCFNRLDLPDYPSKDTLHEKLSLAVE 778
>sp|O13834|PTR1_SCHPO E3 ubiquitin-protein ligase ptr1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ptr1 PE=1 SV=1
Length = 3227
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 26/65 (40%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L R + LP TC N L LP+Y + E +R L A E
Sbjct: 3160 PLNGFKELEGMSGFQRFNIHKSYGSLNRLPQSHTCFNQLDLPEYDTYEQLRSMLLTAINE 3219
Query: 88 GQHSF 92
G F
Sbjct: 3220 GSEGF 3224
>sp|Q8BZZ3|WWP1_MOUSE NEDD4-like E3 ubiquitin-protein ligase WWP1 OS=Mus musculus GN=Wwp1
PE=1 SV=2
Length = 918
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 50 LAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQ 89
+ D +LP TC N L LP Y S E +++KL A +E +
Sbjct: 874 VGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 913
>sp|Q2UBP1|RSP5_ASPOR Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=hulA PE=3 SV=2
Length = 816
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L R T E G LP TC N L LP Y + +V+ KL +A +E
Sbjct: 751 PVNGFKDLQGSDGPRRFTIEKS-GDPGALPKSHTCFNRLDLPPYKTNDVLEHKLSIAVEE 809
>sp|B8N7E5|RSP5_ASPFN Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus flavus
(strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722
/ SRRC 167) GN=hulA PE=3 SV=1
Length = 812
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L R T E G LP TC N L LP Y + +V+ KL +A +E
Sbjct: 747 PVNGFKDLQGSDGPRRFTIEKS-GDPGALPKSHTCFNRLDLPPYKTNDVLEHKLSIAVEE 805
>sp|Q15386|UBE3C_HUMAN Ubiquitin-protein ligase E3C OS=Homo sapiens GN=UBE3C PE=1 SV=3
Length = 1083
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L P I SDL LP+ TC+N LKLP++ ++R KL L A E
Sbjct: 1022 PLLGFKELYPAFCIHNGG--SDLER---LPTASTCMNLLKLPEFYDETLLRSKL-LYAIE 1075
Query: 88 GQHSFHLS 95
F LS
Sbjct: 1076 CAAGFELS 1083
>sp|Q80U95|UBE3C_MOUSE Ubiquitin-protein ligase E3C OS=Mus musculus GN=Ube3c PE=2 SV=2
Length = 1083
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L P I SDL LP+ TC+N LKLP++ ++R KL L A E
Sbjct: 1022 PLLGFKELYPAFCIHNGG--SDLER---LPTASTCMNLLKLPEFYDEALLRSKL-LYAIE 1075
Query: 88 GQHSFHLS 95
F LS
Sbjct: 1076 CAAGFELS 1083
>sp|O00308|WWP2_HUMAN NEDD4-like E3 ubiquitin-protein ligase WWP2 OS=Homo sapiens GN=WWP2
PE=1 SV=2
Length = 870
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 50 LAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
+ + +LP TC N L LP Y S E +R+KL A +E
Sbjct: 826 VGKETWLPRSHTCFNRLDLPPYKSYEQLREKLLYAIEE 863
>sp|A1D3C5|RSP5_NEOFI Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fischeri
(strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181)
GN=hulA PE=3 SV=1
Length = 816
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFE--SDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAA 85
P GF+ L R T E D AA LP TC N L LP Y S E + K+ +A
Sbjct: 751 PVNGFKDLQGSDGPRRFTIEKSGDPAA---LPKSHTCFNRLDLPPYKSYETLEHKMSIAV 807
Query: 86 QE 87
+E
Sbjct: 808 EE 809
>sp|Q4WTF3|RSP5_ASPFU Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=hulA PE=3 SV=2
Length = 813
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFE--SDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAA 85
P GF+ L R T E D AA LP TC N L LP Y S E + K+ +A
Sbjct: 748 PVNGFKDLQGSDGPRRFTIEKSGDPAA---LPKSHTCFNRLDLPPYKSYETLEHKMSIAV 804
Query: 86 QE 87
+E
Sbjct: 805 EE 806
>sp|B0XQ72|RSP5_ASPFC Probable E3 ubiquitin-protein ligase hulA OS=Neosartorya fumigata
(strain CEA10 / CBS 144.89 / FGSC A1163) GN=hulA PE=3
SV=2
Length = 813
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 28 PSRGFRALSPPLTIVRKTFE--SDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAA 85
P GF+ L R T E D AA LP TC N L LP Y S E + K+ +A
Sbjct: 748 PVNGFKDLQGSDGPRRFTIEKSGDPAA---LPKSHTCFNRLDLPPYKSYETLEHKMSIAV 804
Query: 86 QE 87
+E
Sbjct: 805 EE 806
>sp|Q9UTG2|PUB2_SCHPO E3 ubiquitin-protein ligase pub2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pub2 PE=1 SV=1
Length = 671
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 56 LPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
LP TC N L +P Y+S E + QKL +A QE
Sbjct: 633 LPKAHTCFNRLDIPPYNSKEELEQKLTIAIQE 664
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,695,786
Number of Sequences: 539616
Number of extensions: 1084393
Number of successful extensions: 2086
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1980
Number of HSP's gapped (non-prelim): 107
length of query: 95
length of database: 191,569,459
effective HSP length: 65
effective length of query: 30
effective length of database: 156,494,419
effective search space: 4694832570
effective search space used: 4694832570
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)