Query psy9517
Match_columns 95
No_of_seqs 105 out of 1068
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:39:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00119 HECTc Domain Homolo 100.0 3.6E-31 7.7E-36 204.0 4.9 85 1-95 250-336 (336)
2 PF00632 HECT: HECT-domain (ub 100.0 2.1E-31 4.7E-36 200.9 1.7 87 1-95 229-317 (317)
3 cd00078 HECTc HECT domain; C-t 100.0 2.5E-30 5.5E-35 199.3 4.8 83 1-93 268-352 (352)
4 COG5021 HUL4 Ubiquitin-protein 100.0 7.7E-30 1.7E-34 215.8 3.6 90 1-95 781-872 (872)
5 KOG0170|consensus 100.0 3.1E-29 6.8E-34 202.2 4.1 89 3-95 531-621 (621)
6 KOG0942|consensus 99.9 3.7E-26 8E-31 192.5 2.4 85 1-95 915-1001(1001)
7 KOG0941|consensus 99.9 9.2E-25 2E-29 182.9 3.0 82 1-94 766-849 (850)
8 KOG0939|consensus 99.9 1.3E-24 2.8E-29 179.4 3.0 91 1-95 628-720 (720)
9 KOG4427|consensus 99.8 7.1E-22 1.5E-26 165.3 3.5 90 1-95 985-1096(1096)
10 KOG0943|consensus 99.4 4.3E-14 9.2E-19 123.4 2.7 80 1-92 2931-3014(3015)
11 KOG0940|consensus 99.4 1.3E-13 2.9E-18 108.2 2.8 81 1-86 276-358 (358)
12 PF11543 UN_NPL4: Nuclear pore 34.6 42 0.00091 20.9 2.3 32 63-94 15-46 (80)
13 PF04574 DUF592: Protein of un 29.5 45 0.00099 23.8 2.0 20 65-84 127-146 (153)
14 cd02874 GH18_CFLE_spore_hydrol 27.6 67 0.0015 24.1 2.8 24 71-94 276-299 (313)
15 PF05370 DUF749: Domain of unk 25.4 76 0.0016 20.6 2.4 26 59-84 46-71 (87)
16 smart00666 PB1 PB1 domain. Pho 25.0 1.3E+02 0.0028 17.8 3.3 31 64-94 13-43 (81)
17 cd06407 PB1_NLP A PB1 domain i 23.9 1.3E+02 0.0028 18.8 3.2 31 64-94 12-43 (82)
18 PF03368 Dicer_dimer: Dicer di 23.7 86 0.0019 19.7 2.4 20 24-43 9-28 (90)
19 PF13541 ChlI: Subunit ChlI of 22.9 73 0.0016 21.4 2.1 31 61-94 10-40 (121)
20 cd06548 GH18_chitinase The GH1 22.4 98 0.0021 23.5 2.9 24 70-93 292-315 (322)
21 KOG4008|consensus 21.5 96 0.0021 23.9 2.6 25 61-85 41-65 (261)
22 PF08262 Lem_TRP: Leucophaea m 20.7 58 0.0013 13.0 0.7 8 28-35 2-9 (10)
23 PHA02568 J baseplate assembly 20.2 1.2E+02 0.0026 23.5 3.0 20 69-88 116-135 (300)
No 1
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.97 E-value=3.6e-31 Score=204.02 Aligned_cols=85 Identities=47% Similarity=0.670 Sum_probs=79.7
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|+|+++ +++|++||+|+ || ++|+|++||+.+.|+++|.+. +.++++||+||||||+|+||+|+|+|+||
T Consensus 250 w~vl~~~s~ee~~~fL~F~---TG-~~rlP~~G~~~l~~~~~i~~~-----~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ 320 (336)
T smart00119 250 WEVVESFTNEERRKLLQFV---TG-SSRLPVGGFAALSPKFTIRKA-----GSDDDRLPTAHTCFNRLKLPPYSSKEILR 320 (336)
T ss_pred HHHHHHCCHHHHHHhheec---cC-CCCCCCCchhhcCCceEEEEC-----CCCCCCCCccccccCcCcCCCCCCHHHHH
Confidence 899988 99999999999 99 999999999999999998763 34689999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
+||++||++| +||+||
T Consensus 321 ~kL~~AI~~~-~gF~l~ 336 (336)
T smart00119 321 EKLLLAINEG-KGFGLS 336 (336)
T ss_pred HHHHHHHHcC-CCCCCC
Confidence 9999999998 799987
No 2
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.96 E-value=2.1e-31 Score=200.92 Aligned_cols=87 Identities=43% Similarity=0.625 Sum_probs=68.6
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|+||++ +++|++||+|+ || ++++|++||+.+.|+++|.... ..++++||+||||||+|+||.|+|+|+||
T Consensus 229 w~vl~~~s~~~~~~fL~F~---TG-~~~lP~~G~~~l~~~i~i~~~~----~~~~~~LP~a~TCf~~L~LP~Yss~e~l~ 300 (317)
T PF00632_consen 229 WEVLEEFSQEERRKFLRFV---TG-SSRLPPGGFSNLNPKITIQFSD----DSPDDRLPTAHTCFNTLKLPRYSSKEILR 300 (317)
T ss_dssp HHHHHHS-HHHHHHHHHHH---HS-SSSB-TTGGGGGE-EEEEEEES----C-STTS--EEEGGGTEEEEEE-SSHHHHH
T ss_pred eeeeccCCHHHhheeEEEe---cC-CCCCCccccccccceeEEeecC----CCccccCceecCcCCEEECCCCCCHHHHH
Confidence 889988 89999999999 99 9999999999988899987643 22477999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
+||++||+++++||+||
T Consensus 301 ~kL~~Ai~~~~~gF~~s 317 (317)
T PF00632_consen 301 EKLLYAIENGQEGFGLS 317 (317)
T ss_dssp HHHHHHHHHT-------
T ss_pred HHHHHHHHcCCCCcCcC
Confidence 99999999997899997
No 3
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.96 E-value=2.5e-30 Score=199.28 Aligned_cols=83 Identities=45% Similarity=0.644 Sum_probs=77.9
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++.++++|.+. +.++++||+||||||+|+||.|+|+|+||
T Consensus 268 w~vl~~~s~eer~~fL~F~---TG-~~rlP~~G~~~l~~~i~i~~~-----~~~~~~LP~a~TCf~~L~LP~Yss~e~l~ 338 (352)
T cd00078 268 WEVLESFTNEERKKFLQFV---TG-SSRLPVGGFADLNPKFTIRRV-----GSPDDRLPTAHTCFNLLKLPPYSSKEILR 338 (352)
T ss_pred HHHHHhCCHHHHHHhheee---cC-CCCCCCcchhhcCCCeEEEEC-----CCCCCCCCcchhhhccccCCCCCCHHHHH
Confidence 899999 99999999999 99 999999999999999998763 34699999999999999999999999999
Q ss_pred HHHHHHHhcCCccee
Q psy9517 79 QKLRLAAQEGQHSFH 93 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~ 93 (95)
+||++||++|+ |||
T Consensus 339 ~kL~~AI~~~~-gF~ 352 (352)
T cd00078 339 EKLLYAINEGA-GFG 352 (352)
T ss_pred HHHHHHHHcCC-CCC
Confidence 99999999986 997
No 4
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.7e-30 Score=215.84 Aligned_cols=90 Identities=39% Similarity=0.525 Sum_probs=84.8
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
||++++ .++|++||||+ || ++|+|++||+.++++.++++...+..+.++++||+||||||+|+||+|+|||.|+
T Consensus 781 Weii~~f~~eer~klLQFv---TG-tsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~YsSke~Lr 856 (872)
T COG5021 781 WEIISEFDFEERAKLLQFV---TG-TSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLR 856 (872)
T ss_pred HHHHHHhCHHHHhhhheec---cC-CCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCCCCCHHHHH
Confidence 999999 99999999999 99 9999999999999988887777777788899999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
+||..||++|. ||++.
T Consensus 857 ~kL~~AI~Eg~-GFg~~ 872 (872)
T COG5021 857 SKLLTAINEGA-GFGLL 872 (872)
T ss_pred HHHHHHHHhcc-CcCcC
Confidence 99999999986 99974
No 5
>KOG0170|consensus
Probab=99.95 E-value=3.1e-29 Score=202.24 Aligned_cols=89 Identities=56% Similarity=0.813 Sum_probs=84.6
Q ss_pred eeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHHHH
Q psy9517 3 VLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQK 80 (95)
Q Consensus 3 vl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~~k 80 (95)
|+++ .+|+|.||||+ || +.|+|+|||+.++|+++|+++..++...+|+.||+++||.|+|+||+|+|+|+|++|
T Consensus 531 ils~f~~~qQR~FLQFv---TG-SprLPiGGfasLNPklTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP~YSSkEiM~~k 606 (621)
T KOG0170|consen 531 ILSAFDKEQQRLFLQFV---TG-SPRLPIGGFASLNPKLTIVRKHAEDSETPDDYLPSVMTCANYLKLPPYSSKEIMRSK 606 (621)
T ss_pred HhhhhchHHHHHHHHHh---cC-CCCCCCCcccccCCCeEEEeccCCCCCCcccccchHHHHHhhhcCCCCchHHHHHHH
Confidence 4556 89999999999 99 999999999999999999999877778899999999999999999999999999999
Q ss_pred HHHHHhcCCcceecC
Q psy9517 81 LRLAAQEGQHSFHLS 95 (95)
Q Consensus 81 L~~AI~~~~~gF~l~ 95 (95)
|.+||++|+..||||
T Consensus 607 L~~Ai~EGqgSFhLS 621 (621)
T KOG0170|consen 607 LLYAIEEGQGSFHLS 621 (621)
T ss_pred HHHHHHccccccccC
Confidence 999999999999997
No 6
>KOG0942|consensus
Probab=99.92 E-value=3.7e-26 Score=192.53 Aligned_cols=85 Identities=38% Similarity=0.584 Sum_probs=81.0
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|||+++ .|++++||+|| || ++|.|+.||+.+.|+|.|.. .+..+++||+|.||.|.|+||+|++++.||
T Consensus 915 WeVl~~F~~edKr~fLKFV---Ts-csRpPllGFK~L~P~FcI~n-----~gsd~~RLPTASTCmNLLKLP~y~~kt~Lr 985 (1001)
T KOG0942|consen 915 WEVLEEFSDEDKRKFLKFV---TS-CSRPPLLGFKALDPAFCIRN-----AGSDDDRLPTASTCMNLLKLPPYSNKTLLR 985 (1001)
T ss_pred HHHHHhcchHHHHHHHHHH---hc-CCCcccccchhcCccceeee-----CCCccccCCcHHHHHHHhcCCCcccHHHHH
Confidence 999999 99999999999 99 99999999999999999975 356899999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
+||++||+.|. ||+||
T Consensus 986 eKLlYAI~sgA-GFeLS 1001 (1001)
T KOG0942|consen 986 EKLLYAINSGA-GFELS 1001 (1001)
T ss_pred HHHHHHHhccc-CCCCC
Confidence 99999999985 99997
No 7
>KOG0941|consensus
Probab=99.90 E-value=9.2e-25 Score=182.92 Aligned_cols=82 Identities=33% Similarity=0.472 Sum_probs=74.7
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
||+++. .++|+|||+|+ || ++|+|++|.+.+ ++.|.+ .+...++||+||||||.|.||.|+|+|.|+
T Consensus 766 We~~~~~~~~~kkkfL~F~---TG-sdRipv~G~~~l--~~~i~~-----~~~~~~~lP~shTCfN~L~Lp~YsskekL~ 834 (850)
T KOG0941|consen 766 WEIFHAFTLEEKKKFLQFL---TG-SDRIPVGGLAKL--KLVIQK-----NGPDEDRLPVSHTCFNVLLLPEYSSKEKLE 834 (850)
T ss_pred HHHHHhCCHHHhhhheEee---cC-CCccccCChhhc--eEEEec-----CCCCcccCcchhhhhhhhhccccCcHHHHH
Confidence 999999 99999999999 99 999999999987 566654 244489999999999999999999999999
Q ss_pred HHHHHHHhcCCcceec
Q psy9517 79 QKLRLAAQEGQHSFHL 94 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l 94 (95)
+||+.||++. +||++
T Consensus 835 ~kL~~Ai~~~-~GF~l 849 (850)
T KOG0941|consen 835 EKLLTAINNT-EGFGL 849 (850)
T ss_pred HHHHHHHHhc-cCcCC
Confidence 9999999996 79987
No 8
>KOG0939|consensus
Probab=99.90 E-value=1.3e-24 Score=179.43 Aligned_cols=91 Identities=31% Similarity=0.477 Sum_probs=80.7
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|++|++ +++|.|||||+ || ++++|.+||..+.+.-.+++...+......++||+||||||+|+||.|.|+|.++
T Consensus 628 Wrav~sf~~eeraklLqFv---TG-tSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~ 703 (720)
T KOG0939|consen 628 WRAVRSFDQEERAKLLQFV---TG-TSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLR 703 (720)
T ss_pred HHHHhhhcHHHHHhhHeee---cc-cccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHH
Confidence 899999 99999999999 99 9999999999998744444433333456899999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
++|..||++|++||++.
T Consensus 704 ~~LllAi~E~segfg~a 720 (720)
T KOG0939|consen 704 ESLLLAINEGSEGFGMA 720 (720)
T ss_pred HHHHHHHHhhhhccCcC
Confidence 99999999999999974
No 9
>KOG4427|consensus
Probab=99.84 E-value=7.1e-22 Score=165.27 Aligned_cols=90 Identities=31% Similarity=0.494 Sum_probs=81.7
Q ss_pred CeeeCC---chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeec--cc-----------------CCCCCCCCCe
Q psy9517 1 MEVLSP---RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTF--ES-----------------DLAADGFLPS 58 (95)
Q Consensus 1 wevl~~---~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~--~~-----------------~~~~~~~LP~ 58 (95)
|+||+. ++||+.||+|+ |. ++|.|+-||+-+.|+|.|.+..+ |. ++.+..+||+
T Consensus 985 WdIl~~dFt~eERklfLKFV---TS-CSrpPlLGFayLePpFsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPT 1060 (1096)
T KOG4427|consen 985 WDILAGDFTPEERKLFLKFV---TS-CSRPPLLGFAYLEPPFSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPT 1060 (1096)
T ss_pred HHHHhccCChHHHHHHHHHH---hh-cCCCccccccccCCCceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCc
Confidence 899988 99999999999 99 99999999999999999975432 21 2677889999
Q ss_pred eecccceeecCCCCCHHHHHHHHHHHHhcCCcceecC
Q psy9517 59 VMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 59 A~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~~gF~l~ 95 (95)
|+||||.|+||.|+-+..|||||++||..+. ||+||
T Consensus 1061 aSTCfNlLKLPnY~kkStlreKLrYAIssnt-GFELS 1096 (1096)
T KOG4427|consen 1061 ASTCFNLLKLPNYKKKSTLREKLRYAISSNT-GFELS 1096 (1096)
T ss_pred hhhHHHhhhCCCcchhHHHHHHHHHHhhcCC-CcccC
Confidence 9999999999999999999999999999975 99997
No 10
>KOG0943|consensus
Probab=99.43 E-value=4.3e-14 Score=123.42 Aligned_cols=80 Identities=29% Similarity=0.482 Sum_probs=67.6
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCC--cccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRG--FRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEV 76 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~G--f~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~ 76 (95)
|+|++. ..+|+.++.|| || +..+|+.| |..+ +++.| ....+.+||+|+||..+|.+|.|+|+.+
T Consensus 2931 WqiiEkfs~qEkQdLVfFW---Tg-SPaLPAa~e~~p~~-aSimi-------RP~dD~fLPTANTCISRLYVPlYSSKqi 2998 (3015)
T KOG0943|consen 2931 WQIIEKFSMQEKQDLVFFW---TG-SPALPAAEEGFPPM-ASIMI-------RPPDDQFLPTANTCISRLYVPLYSSKQI 2998 (3015)
T ss_pred HHHHHHHhhhhhccEEEEe---cC-CCCCCccccCCCCC-Cceee-------cCcccccCCcccchhhheeeechhhHHH
Confidence 899999 89999999999 99 99999874 5543 23333 2357899999999999999999999999
Q ss_pred HHHHHHHHHhcCCcce
Q psy9517 77 MRQKLRLAAQEGQHSF 92 (95)
Q Consensus 77 l~~kL~~AI~~~~~gF 92 (95)
||+||+.||+...-||
T Consensus 2999 LkqKLLLAIKaKNFGF 3014 (3015)
T KOG0943|consen 2999 LKQKLLLAIKAKNFGF 3014 (3015)
T ss_pred HHHHHHHhhhcccccc
Confidence 9999999999865444
No 11
>KOG0940|consensus
Probab=99.39 E-value=1.3e-13 Score=108.24 Aligned_cols=81 Identities=32% Similarity=0.418 Sum_probs=68.0
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|+++++ ++++.+.++|+ || ++++|..||..+...-.......+ .......+|.+|||||++++|.|.|++.|+
T Consensus 276 ~~~v~~~~~~~r~r~l~~~---tg-~~~vp~~~~~~l~~s~~~~~~~ie-~~~~~~~~p~~htcfnrld~~~~~s~~~L~ 350 (358)
T KOG0940|consen 276 WNNVDEMDNEERIRLLQFV---TG-TSRVPVEGFAILSGSNGPRKFCIE-KWGKSTQLPRSHTCFNRLDLPPYESYEPLR 350 (358)
T ss_pred HHhhhhcChHHHHhhhhcc---CC-CccccccchhhccCCCccCceeec-CcccccccchhcccccccccccccchhHHH
Confidence 667777 89999999999 99 999999999998764222122222 367889999999999999999999999999
Q ss_pred HHHHHHHh
Q psy9517 79 QKLRLAAQ 86 (95)
Q Consensus 79 ~kL~~AI~ 86 (95)
+||..||+
T Consensus 351 ~kl~~ai~ 358 (358)
T KOG0940|consen 351 EKLLLAIE 358 (358)
T ss_pred HHHHHhcC
Confidence 99999985
No 12
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=34.55 E-value=42 Score=20.90 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=21.4
Q ss_pred cceeecCCCCCHHHHHHHHHHHHhcCCcceec
Q psy9517 63 VNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 63 fn~L~LP~Y~s~e~l~~kL~~AI~~~~~gF~l 94 (95)
..++.+++=+|...|++|+...+....++|.+
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L 46 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSL 46 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS---TTT---
T ss_pred CEEEEcCCcccHHHHHHHHHHHcCCCCcceEE
Confidence 35788899999999999999988877666655
No 13
>PF04574 DUF592: Protein of unknown function (DUF592); InterPro: IPR007654 This N-terminal region is found in SIR2 proteins (IPR003000 from INTERPRO) and its homologues. Its function is uncharacterised.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides, 0017136 NAD-dependent histone deacetylase activity, 0051287 NAD binding, 0006342 chromatin silencing, 0006355 regulation of transcription, DNA-dependent, 0006476 protein deacetylation; PDB: 2HJH_B.
Probab=29.52 E-value=45 Score=23.78 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=12.4
Q ss_pred eeecCCCCCHHHHHHHHHHH
Q psy9517 65 YLKLPDYSSVEVMRQKLRLA 84 (95)
Q Consensus 65 ~L~LP~Y~s~e~l~~kL~~A 84 (95)
+++||.|.|.|.+-++|..|
T Consensus 127 R~RL~~f~Tid~~v~~lk~a 146 (153)
T PF04574_consen 127 RIRLPNFNTIDDVVDLLKSA 146 (153)
T ss_dssp ----TT--SHHHHHHHHHH-
T ss_pred HhhcCCcCcHHHHHHHHHhc
Confidence 58999999999999999877
No 14
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=27.57 E-value=67 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCCcceec
Q psy9517 71 YSSVEVMRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 71 Y~s~e~l~~kL~~AI~~~~~gF~l 94 (95)
|.+.+.+++|+.+|.+++-.|+.+
T Consensus 276 y~d~~Si~~K~~~~~~~~lgGv~i 299 (313)
T cd02874 276 FEDARSLQAKFELAKEYGLRGVSY 299 (313)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEE
Confidence 999999999999999998777653
No 15
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=25.43 E-value=76 Score=20.62 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=17.4
Q ss_pred eecccceeecCCCCCHHHHHHHHHHH
Q psy9517 59 VMTCVNYLKLPDYSSVEVMRQKLRLA 84 (95)
Q Consensus 59 A~TCfn~L~LP~Y~s~e~l~~kL~~A 84 (95)
.-||+.-+.|-.|.+.|..++.|..+
T Consensus 46 gTtSy~v~FLd~~~~ieeIk~eL~e~ 71 (87)
T PF05370_consen 46 GTTSYQVFFLDSYNSIEEIKEELKEA 71 (87)
T ss_dssp TTT-EEEEE-S---S-HHHHHHHHHH
T ss_pred CCceEEEEEEcCCCCHHHHHHHHHHc
Confidence 45788889999999999999999876
No 16
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=25.00 E-value=1.3e+02 Score=17.79 Aligned_cols=31 Identities=29% Similarity=0.306 Sum_probs=23.0
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhcCCcceec
Q psy9517 64 NYLKLPDYSSVEVMRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 64 n~L~LP~Y~s~e~l~~kL~~AI~~~~~gF~l 94 (95)
..+.+|.-.|++.|++++.........+|.|
T Consensus 13 ~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l 43 (81)
T smart00666 13 RRLSVPRDISFEDLRSKVAKRFGLDNQSFTL 43 (81)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCeEE
Confidence 3577888888999999998888765445543
No 17
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=23.92 E-value=1.3e+02 Score=18.80 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=23.3
Q ss_pred ceeecCCCCCHHHHHHHHHHHHhcCC-cceec
Q psy9517 64 NYLKLPDYSSVEVMRQKLRLAAQEGQ-HSFHL 94 (95)
Q Consensus 64 n~L~LP~Y~s~e~l~~kL~~AI~~~~-~gF~l 94 (95)
.++.||.-.+.+.|++++..-..... .+|.|
T Consensus 12 ~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~L 43 (82)
T cd06407 12 IRFRLPPSWGFTELKQEIAKRFKLDDMSAFDL 43 (82)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEE
Confidence 36788888899999999888776542 36765
No 18
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=23.75 E-value=86 Score=19.69 Aligned_cols=20 Identities=30% Similarity=0.494 Sum_probs=11.9
Q ss_pred cCCCCCCCcccCCCCeeEee
Q psy9517 24 SGFNPSRGFRALSPPLTIVR 43 (95)
Q Consensus 24 ~~~lP~~Gf~~l~~~~~i~~ 43 (95)
++++|.++|..+.|.+.+..
T Consensus 9 C~~Lp~d~~~~~~P~~~~~~ 28 (90)
T PF03368_consen 9 CSTLPSDSFTNLKPEFEIEK 28 (90)
T ss_dssp HTTSSS-TT--SS-EEEEEE
T ss_pred HhcCCCCCCccCCceEEEEE
Confidence 46799999988887776654
No 19
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=22.90 E-value=73 Score=21.37 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=24.0
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhcCCcceec
Q psy9517 61 TCVNYLKLPDYSSVEVMRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 61 TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~~gF~l 94 (95)
.+|+.+-||+ ++...-|+|++.|+++. ||.+
T Consensus 10 p~~~ivGl~~-~av~esr~Rv~~al~~~--g~~~ 40 (121)
T PF13541_consen 10 PSFNIVGLPD-TAVKESRERVRSALKNS--GFPF 40 (121)
T ss_pred CceEEecCch-HHHHHHHHHHHHHHHhc--CCCC
Confidence 4577778888 56666889999999993 7765
No 20
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=22.45 E-value=98 Score=23.48 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCccee
Q psy9517 70 DYSSVEVMRQKLRLAAQEGQHSFH 93 (95)
Q Consensus 70 ~Y~s~e~l~~kL~~AI~~~~~gF~ 93 (95)
-|++.+.++.|..+|.+++-.|..
T Consensus 292 ~ydd~~Si~~K~~~a~~~~LgGv~ 315 (322)
T cd06548 292 SYDDPRSIKAKADYVKDKGLGGVM 315 (322)
T ss_pred EeCCHHHHHHHHHHHHhcCCccEE
Confidence 499999999999999999876754
No 21
>KOG4008|consensus
Probab=21.47 E-value=96 Score=23.91 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=22.3
Q ss_pred cccceeecCCCCCHHHHHHHHHHHH
Q psy9517 61 TCVNYLKLPDYSSVEVMRQKLRLAA 85 (95)
Q Consensus 61 TCfn~L~LP~Y~s~e~l~~kL~~AI 85 (95)
-|...+-+|.|++.|.|++-+-.++
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhh
Confidence 5888999999999999999887765
No 22
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=20.70 E-value=58 Score=12.98 Aligned_cols=8 Identities=50% Similarity=1.066 Sum_probs=4.8
Q ss_pred CCCCcccC
Q psy9517 28 PSRGFRAL 35 (95)
Q Consensus 28 P~~Gf~~l 35 (95)
|.-||+++
T Consensus 2 psmgf~g~ 9 (10)
T PF08262_consen 2 PSMGFHGM 9 (10)
T ss_pred Cccccccc
Confidence 56677653
No 23
>PHA02568 J baseplate assembly protein; Provisional
Probab=20.22 E-value=1.2e+02 Score=23.50 Aligned_cols=20 Identities=15% Similarity=0.270 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHHHhcC
Q psy9517 69 PDYSSVEVMRQKLRLAAQEG 88 (95)
Q Consensus 69 P~Y~s~e~l~~kL~~AI~~~ 88 (95)
+.+.|-|.||+|++.|.+.-
T Consensus 116 a~~EsDe~lR~Ri~la~~~~ 135 (300)
T PHA02568 116 AVMEDDDSLRERIQLAPEGL 135 (300)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 56899999999999999753
Done!