Query psy9517
Match_columns 95
No_of_seqs 105 out of 1068
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pt3_A E3 ubiquitin-protein li 100.0 2E-33 6.9E-38 189.8 2.2 80 1-94 34-117 (118)
2 3h1d_A E3 ubiquitin-protein li 100.0 1.2E-31 4.2E-36 210.6 2.8 86 1-95 313-405 (405)
3 1zvd_A SMAD ubiquitination reg 100.0 6.4E-31 2.2E-35 204.7 3.4 85 1-95 289-380 (380)
4 1c4z_A E6AP, ubiquitin-protein 100.0 6.6E-31 2.2E-35 203.3 2.9 83 1-95 274-358 (358)
5 3olm_A E3 ubiquitin-protein li 100.0 9.9E-30 3.4E-34 200.7 3.6 83 1-94 339-428 (429)
6 1nd7_A WW domain-containing pr 99.9 1.2E-28 4.1E-33 191.4 3.9 78 1-88 289-373 (374)
7 2oni_A E3 ubiquitin-protein li 99.9 5.4E-28 1.9E-32 188.9 3.2 77 1-87 309-392 (392)
8 1sn9_A BBAT, tetrameric beta-B 27.7 37 0.0013 16.2 1.7 20 67-86 3-22 (26)
9 3gdw_A Sigma-54 interaction do 27.5 62 0.0021 21.0 3.4 27 61-87 31-57 (139)
10 3gx1_A LIN1832 protein; APC633 26.2 79 0.0027 20.2 3.7 28 61-88 31-58 (130)
11 1iqo_A Hypothetical protein MT 25.8 50 0.0017 20.6 2.5 26 59-84 47-72 (88)
12 2kj6_A Tubulin folding cofacto 25.3 62 0.0021 19.7 2.9 23 63-85 28-50 (97)
13 2kjr_A CG11242; UBL, ubiquitin 20.0 70 0.0024 19.3 2.4 23 63-85 29-51 (95)
No 1
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.97 E-value=2e-33 Score=189.79 Aligned_cols=80 Identities=30% Similarity=0.505 Sum_probs=59.0
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCC--CCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPS--RGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEV 76 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~--~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~ 76 (95)
|+|+++ +++|++||+|+ || ++|+|+ +||+.+ ++++|. ..++++||+||||||+|+||+|+|+|+
T Consensus 34 W~vv~~~~~eer~~fL~Fv---TG-s~rlP~~~~Gf~~l-~~~~i~-------~~~~~~LP~A~TCfn~L~LP~Y~s~e~ 101 (118)
T 3pt3_A 34 WSIVEKMSMTERQDLVYFW---TS-SPSLPASEEGFQPM-PSITIR-------PPDDQHLPTANTCISRLYVPLYSSKQI 101 (118)
T ss_dssp HHHHHHCCHHHHHHHHHHH---HS-CC-------------CEEEEE-------SCCTTSCCEEETTTTEEEEECCSSHHH
T ss_pred HHHHHHCCHHHHHHHHhHh---cC-CCCCCCcccCcccC-CcEEEE-------CCCCCCCccceehhceeECCCCCCHHH
Confidence 899988 99999999999 99 999999 799987 567664 246899999999999999999999999
Q ss_pred HHHHHHHHHhcCCcceec
Q psy9517 77 MRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 77 l~~kL~~AI~~~~~gF~l 94 (95)
||+||.+||++ +||||
T Consensus 102 L~~kL~~AI~~--~gfGf 117 (118)
T 3pt3_A 102 LKQKLLLAIKT--KNFGF 117 (118)
T ss_dssp HHHHHHHHHC--------
T ss_pred HHHHHHHHHHh--CCcCC
Confidence 99999999998 58986
No 2
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.96 E-value=1.2e-31 Score=210.64 Aligned_cols=86 Identities=38% Similarity=0.543 Sum_probs=70.9
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCC-----CeeEeeeecccCCCCCCCCCeeecccceeecCCCCC
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSP-----PLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSS 73 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~-----~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s 73 (95)
|+|+++ +++|++||+|+ || ++|+|++||+.+.+ ++.|.+ .+.++++||+||||||+|+||+|+|
T Consensus 313 W~v~~~~s~eer~~fL~Fv---TG-s~rlP~~Gf~~L~~~~~~~~f~i~~-----~~~~~~~LP~a~TCfn~L~LP~Yss 383 (405)
T 3h1d_A 313 WRALRSFDQADRAKFLQFV---TG-TSKVPLQGFAALEGMNGIQKFQIHR-----DDRSTDRLPSAHTCFNQLDLPAYES 383 (405)
T ss_dssp HHHHHHSCHHHHHHHHHHH---HS-SSCCCTTCGGGCBCSSSBCCEEEEE-----ECSCTTSCCEEEGGGTEEEEECCSS
T ss_pred HHHHHhCCHHHHHHHHHHH---cC-CCCCCCCccccccccCCCceEEEee-----CCCCCCCCccceeccCEeECCCCCC
Confidence 899998 99999999999 99 99999999999875 455543 2456889999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcceecC
Q psy9517 74 VEVMRQKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 74 ~e~l~~kL~~AI~~~~~gF~l~ 95 (95)
+|+||+||.+||++|++||||.
T Consensus 384 ~e~l~ekL~~AI~e~~~GFgla 405 (405)
T 3h1d_A 384 FEKLRHMLLLAIQEASEGFGLA 405 (405)
T ss_dssp HHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHhCCCCcCCC
Confidence 9999999999999998999974
No 3
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.96 E-value=6.4e-31 Score=204.65 Aligned_cols=85 Identities=32% Similarity=0.445 Sum_probs=71.6
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCC-----CeeEeeeecccCCCCCCCCCeeecccceeecCCCCC
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSP-----PLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSS 73 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~-----~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s 73 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++.+ +++|... +.++++||+||||||+|+||+|+|
T Consensus 289 W~vv~~~s~eer~~fL~Fv---TG-s~rlP~~Gf~~L~~~~gp~~f~I~~~-----~~~~~~LP~a~TCfn~L~LP~Y~s 359 (380)
T 1zvd_A 289 WKAVEFFDEERRARLLQFV---TG-SSRVPLQGFKALQGAAGPRLFTIHQI-----DACTNNLPKAHTCFNRIDIPPYES 359 (380)
T ss_dssp HHHHHHSCHHHHHHHHHHH---HS-CSSBCTTCGGGCEETTEECCEEEEEC-----CCCTTSCCEEEGGGTEEEECCCSS
T ss_pred HHHHHhCCHHHHHHHHHHH---hC-CCCCCCcchhhccccCCCCceEEEec-----CCCCCCCCEEecCcCEEECCCCCC
Confidence 899999 99999999999 99 99999999999864 5777642 457899999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcceecC
Q psy9517 74 VEVMRQKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 74 ~e~l~~kL~~AI~~~~~gF~l~ 95 (95)
+|+||+||++||+++ +||++.
T Consensus 360 ~e~l~~kL~~AI~~~-~GF~l~ 380 (380)
T 1zvd_A 360 YEKLYEKLLTAIEET-CGFAVE 380 (380)
T ss_dssp HHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhC-CCcCcC
Confidence 999999999999997 599974
No 4
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.96 E-value=6.6e-31 Score=203.29 Aligned_cols=83 Identities=28% Similarity=0.448 Sum_probs=70.6
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCCCeeEeeeecccCCCCCCCCCeeecccceeecCCCCCHHHHH
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMR 78 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s~e~l~ 78 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++ +++|.+.. .++++||+||||||+|+||+|+|+|+||
T Consensus 274 W~vv~~~~~eer~~fL~Fv---TG-s~rlP~~Gf~~l--~~~I~~~~-----~~~~~LP~a~TCfn~L~LP~Y~s~e~l~ 342 (358)
T 1c4z_A 274 WEIVHSFTDEQKRLFLQFT---TG-TDRAPVGGLGKL--KMIIAKNG-----PDTERLPTSHTCFNVLLLPEYSSKEKLK 342 (358)
T ss_dssp HHHHHTSCHHHHHHHHHHH---SS-SSSBCTTCGGGG--CCEEEEEE-----ESCSCCCEEEGGGTEEEEEECSCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH---cC-CCCCCCCCcccc--eeeeecCC-----CCCCCCeEEEccCCEeECCCCCCHHHHH
Confidence 899999 99999999999 99 999999999988 47776532 3467999999999999999999999999
Q ss_pred HHHHHHHhcCCcceecC
Q psy9517 79 QKLRLAAQEGQHSFHLS 95 (95)
Q Consensus 79 ~kL~~AI~~~~~gF~l~ 95 (95)
+||++||++++ ||+++
T Consensus 343 ~kL~~AI~~~~-GFgl~ 358 (358)
T 1c4z_A 343 ERLLKAITYAK-GFGML 358 (358)
T ss_dssp HHHHHHHHHC-------
T ss_pred HHHHHHHHhCC-CCCcC
Confidence 99999999985 99984
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.95 E-value=9.9e-30 Score=200.70 Aligned_cols=83 Identities=31% Similarity=0.484 Sum_probs=71.5
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCC-----CeeEeeeecccCCCCCCCCCeeecccceeecCCCCC
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSP-----PLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSS 73 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~-----~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s 73 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++.+ +|+|.+ ...+++||+||||||+|+||+|+|
T Consensus 339 W~vv~~~s~eer~~fL~Fv---TG-s~rlP~~Gf~~L~~~~g~~~f~I~~------~~~~~~LP~A~TCfN~L~LP~Yss 408 (429)
T 3olm_A 339 WKCVSEWDNEQRARLLQFT---TG-TSRIPVNGFKDLQGSDGPRRFTIEK------AGEVQQLPKSHTCFNRVDLPQYVD 408 (429)
T ss_dssp HHHHHHSCHHHHHHHHHHH---HS-CSCBCTTCGGGCEETTEECCEEEEC------CSCTTSCCEEEGGGTEEECCCCSS
T ss_pred HHHHHhCCHHHHHHHHhHh---cC-CCCCCCcccccccCcCCCceEEEee------CCCCCCCCccccccCEeECCCCCC
Confidence 899998 99999999999 99 99999999999875 466653 234789999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcceec
Q psy9517 74 VEVMRQKLRLAAQEGQHSFHL 94 (95)
Q Consensus 74 ~e~l~~kL~~AI~~~~~gF~l 94 (95)
+|+||+||++||+++ +|||+
T Consensus 409 ~e~L~ekL~~AI~~~-~GFg~ 428 (429)
T 3olm_A 409 YDSMKQKLTLAVEET-IGFGQ 428 (429)
T ss_dssp HHHHHHHHHHHHHHT-C----
T ss_pred HHHHHHHHHHHHHcC-CCCCC
Confidence 999999999999997 69986
No 6
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.94 E-value=1.2e-28 Score=191.42 Aligned_cols=78 Identities=32% Similarity=0.503 Sum_probs=70.6
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCC-----CeeEeeeecccCCCCCCCCCeeecccceeecCCCCC
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSP-----PLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSS 73 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~-----~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s 73 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++.+ +++|.+ ..++++||+||||||+|+||+|+|
T Consensus 289 W~vv~~~~~eer~~fL~Fv---TG-s~rlP~~Gf~~L~~~~gp~~f~I~~------~~~~~~LP~a~TCfn~L~LP~Y~s 358 (374)
T 1nd7_A 289 WQFVKETDNEVRMRLLQFV---TG-TCRLPLGGFAELMGSNGPQKFCIEK------VGKDTWLPRSHTCFNRLDLPPYKS 358 (374)
T ss_dssp HHHHHHSCHHHHHHHHHHH---HS-CSCCCTTCGGGCEETTEECCEEEEC------CSCTTSCCEEEGGGTEEECCCCSS
T ss_pred HHHHHhcCHHHHHHHHHHH---hC-CCCCCCcchhhccccCCCCceEEEe------CCCCCcCCEEEcccCEEECCCCCC
Confidence 899988 99999999999 99 99999999999853 566653 245789999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy9517 74 VEVMRQKLRLAAQEG 88 (95)
Q Consensus 74 ~e~l~~kL~~AI~~~ 88 (95)
+|+||+||++||+++
T Consensus 359 ~e~l~~kL~~AI~~~ 373 (374)
T 1nd7_A 359 YEQLKEKLLFAIEET 373 (374)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999996
No 7
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.94 E-value=5.4e-28 Score=188.91 Aligned_cols=77 Identities=31% Similarity=0.460 Sum_probs=68.3
Q ss_pred CeeeCC--chhhhhhcccccccccccCCCCCCCcccCCC-----CeeEeeeecccCCCCCCCCCeeecccceeecCCCCC
Q psy9517 1 MEVLSP--RNTSSHTIQVVIALTGRSGFNPSRGFRALSP-----PLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSS 73 (95)
Q Consensus 1 wevl~~--~e~~~~fL~F~~~~TG~~~~lP~~Gf~~l~~-----~~~i~~~~~~~~~~~~~~LP~A~TCfn~L~LP~Y~s 73 (95)
|+|+++ +++|++||+|+ || ++|+|++||+++.+ +++|.+ ..++++||+||||||+|+||+|+|
T Consensus 309 W~vv~~~s~eer~~fL~Fv---TG-s~rlP~~Gf~~L~~~~gp~~f~I~~------~~~~~~LP~a~TCfn~L~LP~Yss 378 (392)
T 2oni_A 309 WKAVLLMDAEKRIRLLQFV---TG-TSRVPMNGFAELYGSNGPQLFTIEQ------WGSPEKLPRAHTCFNRLDLPPYET 378 (392)
T ss_dssp HHHHHHSCHHHHHHHHHHH---HS-CSCCCTTCGGGCEETTEECCCEEEE------CSCTTSCCEEEGGGTEEEECCCSS
T ss_pred HHHHHhCCHHHHHHHHHHH---hC-CCCCCCcchhhhcccCCCCceEEEe------CCCCCcCcEEEcccCEeECCCCCC
Confidence 899998 99999999999 99 99999999999852 466653 235689999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q psy9517 74 VEVMRQKLRLAAQE 87 (95)
Q Consensus 74 ~e~l~~kL~~AI~~ 87 (95)
+|+||+||++||++
T Consensus 379 ~e~L~~kL~~AI~n 392 (392)
T 2oni_A 379 FEDLREKLLMAVEN 392 (392)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999985
No 8
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=27.72 E-value=37 Score=16.24 Aligned_cols=20 Identities=25% Similarity=0.492 Sum_probs=17.0
Q ss_pred ecCCCCCHHHHHHHHHHHHh
Q psy9517 67 KLPDYSSVEVMRQKLRLAAQ 86 (95)
Q Consensus 67 ~LP~Y~s~e~l~~kL~~AI~ 86 (95)
.+|.|.=.+.|.+-|+.|.-
T Consensus 3 ripsydfadelakllrqa~g 22 (26)
T 1sn9_A 3 RIPSYDFADELAKLLRQAXG 22 (26)
T ss_dssp CBTTBCHHHHHHHHHHHHTC
T ss_pred CCCccchHHHHHHHHHHhhC
Confidence 58999999999999988853
No 9
>3gdw_A Sigma-54 interaction domain protein; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=27.46 E-value=62 Score=21.02 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.8
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhc
Q psy9517 61 TCVNYLKLPDYSSVEVMRQKLRLAAQE 87 (95)
Q Consensus 61 TCfn~L~LP~Y~s~e~l~~kL~~AI~~ 87 (95)
..+-.+++|.-.+.|.+.+|+..+|+.
T Consensus 31 ~~~~aid~~~~~~~~~~~~~i~~~i~~ 57 (139)
T 3gdw_A 31 SIGTAMNMPLTMEVQTMYEQLRNQVIT 57 (139)
T ss_dssp CCCEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred ccEEEEEccCCCCHHHHHHHHHHHHHh
Confidence 356678999999999999999999976
No 10
>3gx1_A LIN1832 protein; APC63308.2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Listeria innocua CLIP11262}
Probab=26.21 E-value=79 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=24.5
Q ss_pred cccceeecCCCCCHHHHHHHHHHHHhcC
Q psy9517 61 TCVNYLKLPDYSSVEVMRQKLRLAAQEG 88 (95)
Q Consensus 61 TCfn~L~LP~Y~s~e~l~~kL~~AI~~~ 88 (95)
..+-.+++|.-.+.+.+++|+..+|+.-
T Consensus 31 ~~~~aid~~~~~~~~~~~~~i~~~i~~~ 58 (130)
T 3gx1_A 31 ESGIALDMPLTVEVKAMYEKLKQTVVKL 58 (130)
T ss_dssp CCCEEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred cCEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 3566789999999999999999999864
No 11
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=25.79 E-value=50 Score=20.58 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred eecccceeecCCCCCHHHHHHHHHHH
Q psy9517 59 VMTCVNYLKLPDYSSVEVMRQKLRLA 84 (95)
Q Consensus 59 A~TCfn~L~LP~Y~s~e~l~~kL~~A 84 (95)
.-||+.-+.|-.|.+.|..++.|..+
T Consensus 47 gT~Sy~v~FLd~~~~ieeIk~eL~~~ 72 (88)
T 1iqo_A 47 GTQSNHVLFLSSYNSVDEIRKELEEA 72 (88)
T ss_dssp TTTCCEEEECSCCCSCHHHHHHHHHH
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHc
Confidence 45788889999999999999999865
No 12
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=25.31 E-value=62 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.5
Q ss_pred cceeecCCCCCHHHHHHHHHHHH
Q psy9517 63 VNYLKLPDYSSVEVMRQKLRLAA 85 (95)
Q Consensus 63 fn~L~LP~Y~s~e~l~~kL~~AI 85 (95)
...+++++..|.+.+|+||..-.
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~ 50 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKC 50 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHH
T ss_pred EEEEEeCCCChHHHHHHHHHHHH
Confidence 35699999999999999998643
No 13
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.03 E-value=70 Score=19.32 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.6
Q ss_pred cceeecCCCCCHHHHHHHHHHHH
Q psy9517 63 VNYLKLPDYSSVEVMRQKLRLAA 85 (95)
Q Consensus 63 fn~L~LP~Y~s~e~l~~kL~~AI 85 (95)
...+++++..|.+.+|+||....
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~ 51 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILT 51 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHH
T ss_pred EEEEEeCccCHHHHHHHHHHHHH
Confidence 45689999999999999998654
Done!