RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9517
(95 letters)
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
subclass of Ubiquitin-protein ligase (E3). It binds
specific ubiquitin-conjugating enzymes (E2), accepts
ubiquitin from E2, transfers ubiquitin to substrate
lysine side chains, and transfers additional ubiquitin
molecules to the end of growing ubiquitin chains.
Length = 352
Score = 89.9 bits (224), Expect = 5e-23
Identities = 32/74 (43%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF L+P TI R + D LP+ TC N LKLP YSS E++R+
Sbjct: 286 VTGSS-RLPVGGFADLNPKFTIRRVG-----SPDDRLPTAHTCFNLLKLPPYSSKEILRE 339
Query: 80 KLRLAAQEGQHSFH 93
KL A EG F
Sbjct: 340 KLLYAINEGA-GFG 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
with. E3 ubiquitin-protein ligases. Can bind to E2
enzymes.
Length = 328
Score = 80.7 bits (200), Expect = 1e-19
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 20 LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
+TG S P GF ALSP TI + + + LP+ TC N LKLP YSS E++R+
Sbjct: 263 VTGSSRL-PVGGFAALSPKFTIRKAGSDDE-----RLPTAHTCFNRLKLPPYSSKEILRE 316
Query: 80 KLRLAAQEGQ 89
KL LA EG+
Sbjct: 317 KLLLAINEGK 326
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase). The name
HECT comes from Homologous to the E6-AP Carboxyl
Terminus.
Length = 298
Score = 78.9 bits (195), Expect = 4e-19
Identities = 33/75 (44%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 21 TGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQK 80
TG S P GF+ L +TI RK D LP+ TC N LKLP YSS E++++K
Sbjct: 233 TGSSRL-PLGGFKKL--KITIQRK------DDDDRLPTAHTCFNRLKLPPYSSKEILKEK 283
Query: 81 LRLAAQEGQHSFHLS 95
L +A +EG F LS
Sbjct: 284 LLIAIEEGSEGFGLS 298
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational
modification, protein turnover, chaperones].
Length = 872
Score = 78.3 bits (193), Expect = 1e-18
Identities = 28/67 (41%), Positives = 33/67 (49%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L + + T E D LPS TC N LKLP+YSS E +R KL A E
Sbjct: 806 PINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPEYSSKEKLRSKLLTAINE 865
Query: 88 GQHSFHL 94
G L
Sbjct: 866 GAGFGLL 872
>gnl|CDD|226811 COG4374, COG4374, PIN domain nuclease, a component of
toxin-antitoxin system (PIN domain) [Signal
transduction].
Length = 130
Score = 28.7 bits (64), Expect = 0.24
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 2 EVLSPRNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKT-FESDLA 51
+VL + SS + V P + L P L+ VR+ F+SD A
Sbjct: 27 KVLPSQWISSVNLAEVQGKLLDGALTPRQIEAQLGPLLSFVREVPFDSDCA 77
>gnl|CDD|165085 PHA02711, PHA02711, Toll/IL-receptor-like protein; Provisional.
Length = 190
Score = 27.7 bits (61), Expect = 0.92
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 71 YSSVEVMRQKLRLAAQEGQHSF 92
+ ++E ++QKLRL ++EG +F
Sbjct: 94 FGTIEELKQKLRLNSEEGADNF 115
>gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional.
Length = 443
Score = 26.9 bits (60), Expect = 1.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 19 ALTGRSGFNPSRGFRALSPPLTIVRKTF----ESDLAADGF 55
L ++G+ P G + P LT+VR T + A G
Sbjct: 389 DLHSKAGWTPFEGMEGVFPELTMVRGTVVWDGDDINAKRGR 429
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 25.4 bits (56), Expect = 6.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 75 EVMRQKLRLAAQEG 88
+ MR LR AAQ+G
Sbjct: 521 QAMRLTLRQAAQQG 534
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 24.8 bits (54), Expect = 8.2
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 3 VLSPRNTSSHTIQVVIALTGRSGFNPSRG 31
VL PR+ + + VV R NP +
Sbjct: 92 VLIPRSDTEVLVDVVFQCHSRESGNPEKK 120
>gnl|CDD|233960 TIGR02642, phage_xxxx, uncharacterized phage protein. This
uncharacterized protein is found in prophage regions of
Shewanella oneidensis MR-1, Vibrio vulnificus YJ016,
Yersinia pseudotuberculosis IP 32953, and Aeromonas
hydrophila ATCC7966. It appears to have regions of
sequence similarity to phage lambda antitermination
protein Q [Mobile and extrachromosomal element
functions, Prophage functions].
Length = 186
Score = 24.4 bits (53), Expect = 9.9
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 55 FLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQ 86
+ SV V+ L+ + + V+ +++RL +
Sbjct: 155 VVTSVRAQVDALRRHESDAARVVERRIRLEFE 186
>gnl|CDD|214008 cd12809, Esterase_713_like-2, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 280
Score = 24.5 bits (54), Expect = 9.9
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 22 GRSGFNPSRGFRALSPPLTIVRKTF 46
GRS +NP G + V + F
Sbjct: 85 GRSPWNPEVGGPLAASTAETVEQRF 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.132 0.377
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,748,849
Number of extensions: 386157
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 18
Length of query: 95
Length of database: 10,937,602
Length adjustment: 62
Effective length of query: 33
Effective length of database: 8,187,654
Effective search space: 270192582
Effective search space used: 270192582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)