RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9517
(95 letters)
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE,
alternative splicing, chromosomal rearrangement,
cytoplasm, differentiation; 1.89A {Homo sapiens} PDB:
3g1n_A
Length = 405
Score = 69.2 bits (170), Expect = 1e-15
Identities = 27/68 (39%), Positives = 32/68 (47%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P +GF AL I + D + LPS TC N L LP Y S E +R L LA QE
Sbjct: 338 PLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQE 397
Query: 88 GQHSFHLS 95
F L+
Sbjct: 398 ASEGFGLA 405
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold,
ubiquitin ligase; 1.97A {Homo sapiens}
Length = 118
Score = 62.7 bits (153), Expect = 1e-14
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 31 GFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQEGQH 90
P +I + + LP+ TC++ L +P YSS ++++QKL LA +
Sbjct: 61 SEEGFQPMPSITIRPPDDQ-----HLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNF 115
Query: 91 SF 92
F
Sbjct: 116 GF 117
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic
mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Length = 380
Score = 61.8 bits (151), Expect = 4e-13
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P +GF+AL T A LP TC N + +P Y S E + +KL A +E
Sbjct: 314 PLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEE 373
Query: 88 GQ 89
Sbjct: 374 TC 375
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 429
Score = 59.6 bits (145), Expect = 3e-12
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P GF+ L R T E LP TC N + LP Y + M+QKL LA +E
Sbjct: 364 PVNGFKDLQGSDGPRRFTIEKAGEVQ-QLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEE 422
Query: 88 GQ 89
Sbjct: 423 TI 424
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 59.1 bits (144), Expect = 4e-12
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLAAQE 87
P G L + I + +++ LP+ TC N L LP+YSS E ++++L A
Sbjct: 299 PVGGLGKL--KMIIAKNGPDTE-----RLPTSHTCFNVLLLPEYSSKEKLKERLLKAITY 351
Query: 88 GQ 89
+
Sbjct: 352 AK 353
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1;
2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Length = 374
Score = 58.0 bits (141), Expect = 1e-11
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 28 PSRGFRALS-----PPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLR 82
P GF L I + + D +LP TC N L LP Y S E +++KL
Sbjct: 314 PLGGFAELMGSNGPQKFCIEK------VGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLL 367
Query: 83 LAAQEGQ 89
A +E +
Sbjct: 368 FAIEETE 374
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 56.1 bits (136), Expect = 5e-11
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 28 PSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQKLRLA 84
P GF L T E + + LP TC N L LP Y + E +R+KL +A
Sbjct: 334 PMNGFAELYGSNGPQLFTIEQWGSPE-KLPRAHTCFNRLDLPPYETFEDLREKLLMA 389
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.68
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 39/88 (44%)
Query: 2 EVLSPRNTSSHTIQVVIALTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMT 61
++ N + Q V A G DL A L +V
Sbjct: 1839 WLVEIVNYNVENQQYVAA-----------G-----------------DLRA---LDTVTN 1867
Query: 62 CVNYLK--------LPDYSSVEVMRQKL 81
+N++K L S+E + L
Sbjct: 1868 VLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET:
ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 24.4 bits (53), Expect = 7.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 65 YLKLPDYSSVEVMRQKLRL 83
L+ P S E +R L
Sbjct: 33 MLQFPHISQCEELRLSLER 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.132 0.377
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,408,982
Number of extensions: 72864
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 12
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)