RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9517
         (95 letters)



>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 374

 Score = 75.6 bits (185), Expect = 2e-18
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 20  LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
           +TG     P  GF  L       +   E     D +LP   TC N L LP Y S E +++
Sbjct: 307 VTGTCRL-PLGGFAELMGSNGPQKFCIEKV-GKDTWLPRSHTCFNRLDLPPYKSYEQLKE 364

Query: 80  KLRLAAQEGQ 89
           KL  A +E +
Sbjct: 365 KLLFAIEETE 374


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 65.2 bits (158), Expect = 1e-14
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 20  LTGRSGFNPSRGFRALSPPLTIVRKTFESDLAADGFLPSVMTCVNYLKLPDYSSVEVMRQ 79
            TG     P  G   L   + I +   +++      LP+  TC N L LP+YSS E +++
Sbjct: 290 TTGTDRA-PVGGLGKL--KMIIAKNGPDTE-----RLPTSHTCFNVLLLPEYSSKEKLKE 341

Query: 80  KLRLA 84
           +L  A
Sbjct: 342 RLLKA 346


>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 101

 Score = 26.4 bits (58), Expect = 0.30
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 5  SPRNTSSHTIQVVIALTGRSGFNPSRGFR----ALSPPLTIVRKTFESDLAADGFLPS-- 58
          SP N  +   +V I+L G  G     G       +  P   +       L+A+  L    
Sbjct: 1  SPGNRENKEKKVFISLVGSRGL----GCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGD 56

Query: 59 VMTCVNYLKLPDYSS---VEVMRQ----KLRLAAQEGQHSF 92
           +  VN +   +      V V++      + + A  G+  F
Sbjct: 57 QIVEVNGVDFSNLDHKEAVNVLKSSRSLTISIVAAAGRELF 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0592    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 329,838
Number of extensions: 12898
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 6
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)