Query psy9518
Match_columns 132
No_of_seqs 134 out of 1368
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 21:40:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2333|consensus 99.9 3.5E-26 7.6E-31 196.0 7.8 131 1-131 483-614 (614)
2 PRK10415 tRNA-dihydrouridine s 99.8 1.6E-20 3.5E-25 154.6 9.6 92 1-98 222-318 (321)
3 PRK10550 tRNA-dihydrouridine s 99.8 1.2E-18 2.6E-23 143.2 8.5 89 1-96 222-310 (312)
4 COG0042 tRNA-dihydrouridine sy 99.7 2E-16 4.4E-21 130.7 9.1 91 1-99 226-320 (323)
5 TIGR00737 nifR3_yhdG putative 99.6 8.9E-16 1.9E-20 125.6 9.4 92 1-98 220-316 (319)
6 PF01207 Dus: Dihydrouridine s 99.6 2.9E-16 6.3E-21 128.6 2.2 92 1-98 211-307 (309)
7 TIGR00742 yjbN tRNA dihydrouri 99.6 1.7E-15 3.7E-20 125.0 6.7 88 1-97 221-313 (318)
8 PRK11815 tRNA-dihydrouridine s 99.4 2.9E-13 6.2E-18 112.1 6.7 78 1-87 231-312 (333)
9 KOG2335|consensus 97.0 0.0013 2.8E-08 55.6 5.6 81 1-94 231-311 (358)
10 TIGR03798 ocin_TIGR03798 bacte 81.3 2.1 4.6E-05 27.2 3.1 37 68-105 10-46 (64)
11 cd02929 TMADH_HD_FMN Trimethyl 73.0 1.3 2.8E-05 37.3 0.4 20 1-20 317-336 (370)
12 cd02930 DCR_FMN 2,4-dienoyl-Co 72.9 1.1 2.5E-05 37.2 -0.0 20 1-20 304-323 (353)
13 PF07862 Nif11: Nitrogen fixat 70.3 8.7 0.00019 22.9 3.5 27 68-95 12-38 (49)
14 cd02931 ER_like_FMN Enoate red 64.5 2.5 5.4E-05 35.8 0.4 20 1-20 333-352 (382)
15 KOG2334|consensus 61.9 19 0.00041 31.8 5.2 41 1-46 240-280 (477)
16 COG4804 Predicted nuclease of 54.5 9.2 0.0002 29.2 1.9 46 84-129 74-119 (159)
17 PRK08255 salicylyl-CoA 5-hydro 51.7 5.1 0.00011 36.9 0.1 19 1-19 715-734 (765)
18 PF14860 DrrA_P4M: DrrA phosph 48.0 31 0.00067 25.1 3.6 28 75-102 53-80 (120)
19 PF08858 IDEAL: IDEAL domain; 38.6 56 0.0012 18.6 3.1 27 86-112 11-37 (37)
20 COG4778 PhnL ABC-type phosphon 33.9 1.1E+02 0.0024 24.4 5.0 74 31-121 67-154 (235)
21 PF15053 Njmu-R1: Mjmu-R1-like 33.5 2.2E+02 0.0047 24.5 7.1 12 7-18 271-282 (353)
22 COG1995 PdxA Pyridoxal phospha 29.7 34 0.00073 29.1 1.6 40 81-129 219-258 (332)
23 PRK02083 imidazole glycerol ph 29.3 18 0.0004 28.4 0.0 18 1-18 101-118 (253)
24 PF15459 RRP14: 60S ribosome b 28.9 21 0.00045 23.1 0.2 26 103-128 5-30 (64)
25 cd07311 terB_like_1 tellurium 26.9 2.6E+02 0.0057 20.7 7.0 35 6-41 1-35 (150)
26 TIGR00834 ae anion exchange pr 26.6 76 0.0017 30.4 3.6 26 75-100 251-276 (900)
27 cd02809 alpha_hydroxyacid_oxid 26.5 46 0.001 27.0 1.9 37 7-46 255-291 (299)
28 cd07298 PX_RICS The phosphoino 26.2 1.2E+02 0.0027 21.9 3.8 63 2-98 32-94 (115)
29 PF14216 DUF4326: Domain of un 24.1 92 0.002 21.1 2.7 14 2-15 18-32 (86)
30 PF10188 Oscp1: Organic solute 23.8 1.5E+02 0.0032 22.9 4.1 25 22-46 88-112 (173)
31 PF15586 Imm47: Immunity prote 22.0 1.3E+02 0.0029 21.4 3.4 33 80-112 72-104 (116)
32 PRK15117 ABC transporter perip 21.1 74 0.0016 24.8 2.1 34 2-45 73-106 (211)
33 PF10398 DUF2443: Protein of u 20.5 97 0.0021 20.9 2.2 32 1-42 35-71 (79)
34 PF14684 Tricorn_C1: Tricorn p 20.1 1.4E+02 0.0029 19.0 2.8 60 27-101 2-61 (70)
No 1
>KOG2333|consensus
Probab=99.93 E-value=3.5e-26 Score=195.98 Aligned_cols=131 Identities=73% Similarity=1.292 Sum_probs=122.2
Q ss_pred CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcH-HHHHH
Q psy9518 1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLL-ESTQK 79 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~-~lR~~ 79 (132)
||||||+-.||||.+|......++|.-||++++.++.+.-.+|+|.+..||...|+|+.-|+.|++|++|-+-. .++++
T Consensus 483 MIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSDt~GVetTRRFlLE~lSF~~RYiPv~l~e~lpqr 562 (614)
T KOG2333|consen 483 MIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSDTKGVETTRRFLLEFLSFFHRYIPVGLLEVLPQR 562 (614)
T ss_pred EeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCccccHHHHHHHHHHHHHHHHhhchHHHhhcCchh
Confidence 99999999999999999877788999999999999999999999988899999999999999999999997731 36788
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCccccccccccCC
Q psy9518 80 MNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKANSW 131 (132)
Q Consensus 80 i~~~~~~~e~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (132)
||.-.-.--.++-|+.++.+...++||||||+|||+.|.||.|+||||||+.
T Consensus 563 iN~RPp~y~gRdelETLm~S~ka~DWvkiSe~lLGpvPegFtF~PKHKanay 614 (614)
T KOG2333|consen 563 INDRPPLYTGRDELETLMSSQKAADWVKISEMLLGPVPEGFTFTPKHKANAY 614 (614)
T ss_pred hccCCccccchhHHHHHHhcccchhHHHHHHHHcCCCCCCceecccccccCC
Confidence 9988888888999999999999999999999999999999999999999974
No 2
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=99.83 E-value=1.6e-20 Score=154.56 Aligned_cols=92 Identities=25% Similarity=0.317 Sum_probs=85.8
Q ss_pred CccccccccccchhHHhhc-----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHH
Q psy9518 1 MIGRGALIKPWIFQEIKEK-----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLE 75 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~-----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~ 75 (132)
|||||+++|||||.++.++ ..++|+.+++++++++|++.+.++||+ +.++..+|||+.||+| |+|+++ +
T Consensus 222 miGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~----~~~~~~-~ 295 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGP-AKGYRIARKHVSWYLQ----EHAPND-Q 295 (321)
T ss_pred EEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHHHh----cCCchH-H
Confidence 8999999999999999763 235688999999999999999999998 7899999999999999 999999 9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh
Q psy9518 76 STQKMNQRPPMYHGRNELETLMT 98 (132)
Q Consensus 76 lR~~i~~~~~~~e~~~~L~~~~~ 98 (132)
+|+++++++|.+|+.+++++|+.
T Consensus 296 ~r~~~~~~~~~~~~~~~~~~~~~ 318 (321)
T PRK10415 296 FRRTFNAIEDASEQLEALEAYFE 318 (321)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999885
No 3
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=99.77 E-value=1.2e-18 Score=143.24 Aligned_cols=89 Identities=18% Similarity=0.141 Sum_probs=80.5
Q ss_pred CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHh
Q psy9518 1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKM 80 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i 80 (132)
|||||+++|||||+++..+. ++|+.+++++++.+|++...+.+++ ..++.+||||+.||++ |+|+++ ++|+++
T Consensus 222 miGRg~l~nP~lf~~~~~g~-~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~rk~~~~y~~----~~~~~~-~~r~~i 294 (312)
T PRK10550 222 MIGRGALNIPNLSRVVKYNE-PRMPWPEVVALLQKYTRLEKQGDTG-LYHVARIKQWLGYLRK----EYDEAT-ELFQEI 294 (312)
T ss_pred EEcHHhHhCcHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHh----cCCcHH-HHHHHH
Confidence 89999999999999998754 5689999999999999876766666 5789999999999999 999999 999999
Q ss_pred hCCCCHHHHHHHHHHH
Q psy9518 81 NQRPPMYHGRNELETL 96 (132)
Q Consensus 81 ~~~~~~~e~~~~L~~~ 96 (132)
++++|.+|+.++++++
T Consensus 295 ~~~~~~~e~~~~~~~~ 310 (312)
T PRK10550 295 RALNNSPDIARAIQAI 310 (312)
T ss_pred HcCCCHHHHHHHHHhh
Confidence 9999999999998864
No 4
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=2e-16 Score=130.72 Aligned_cols=91 Identities=34% Similarity=0.552 Sum_probs=83.1
Q ss_pred CccccccccccchhHHhh----cccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518 1 MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES 76 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~----~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l 76 (132)
|||||+++|||||.++ + +...+|+..++++++.+|++.+.+++| ..++..+|||+.||++ ++|+++ ++
T Consensus 226 MigRga~~nP~l~~~i-~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~~~~~r~h~~~~~~----~~~~a~-~~ 297 (323)
T COG0042 226 MIGRGALGNPWLFRQI-DYLETGELLPPTLAEVLDILREHLELLLEYYG--KKGLRRLRKHLGYYLK----GLPGAR-EL 297 (323)
T ss_pred EEcHHHccCCcHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHhh----cCccHH-HH
Confidence 8999999999999997 3 233448999999999999999999999 4799999999999999 999999 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhc
Q psy9518 77 TQKMNQRPPMYHGRNELETLMTS 99 (132)
Q Consensus 77 R~~i~~~~~~~e~~~~L~~~~~~ 99 (132)
|+.++++++..++.++++.++.+
T Consensus 298 r~~~~~~~~~~~~~~~l~~~~~~ 320 (323)
T COG0042 298 RRALNKAEDGAEVRRALEAVFEE 320 (323)
T ss_pred HHHHhccCcHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 5
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.64 E-value=8.9e-16 Score=125.63 Aligned_cols=92 Identities=24% Similarity=0.437 Sum_probs=84.8
Q ss_pred CccccccccccchhHHhhc-----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHH
Q psy9518 1 MIGRGALIKPWIFQEIKEK-----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLE 75 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~-----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~ 75 (132)
|||||+++|||||.++.+. ..++|+.+++++++++|++.+.+++|+ ..++..+|||+.||++ ++|++. +
T Consensus 220 migR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~----~~~~~~-~ 293 (319)
T TIGR00737 220 MIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGE-SKGLRIARKHIAWYLK----GFPGNA-A 293 (319)
T ss_pred EEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHh----cCCcHH-H
Confidence 8999999999999999762 134688999999999999999999998 6899999999999999 999999 9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh
Q psy9518 76 STQKMNQRPPMYHGRNELETLMT 98 (132)
Q Consensus 76 lR~~i~~~~~~~e~~~~L~~~~~ 98 (132)
+|+.|++++|.+|+++.+++|+.
T Consensus 294 ~r~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T TIGR00737 294 LRQTLNHASSFQEVKQLLDDFFE 316 (319)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 6
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=99.59 E-value=2.9e-16 Score=128.64 Aligned_cols=92 Identities=30% Similarity=0.453 Sum_probs=74.1
Q ss_pred CccccccccccchhH---Hhhcc-cCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518 1 MIGRGALIKPWIFQE---IKEKK-LFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES 76 (132)
Q Consensus 1 MIGRGAlGnPWIF~q---i~~~~-~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l 76 (132)
|||||+++|||||++ +..+. .+.++..++++++.+|++.+.+++|+ ..++..+|||+.||++ ++|+++ .+
T Consensus 211 MigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~k~~~~y~~----~~~~~~-~~ 284 (309)
T PF01207_consen 211 MIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGE-EKALRQMRKHLKWYFK----GFPGAR-KF 284 (309)
T ss_dssp EESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHC-CHHHHHHHTTCCCCTT----TSTTHH-HH
T ss_pred EEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhcc-CchHHHHHHHHHHHHc----cCCcHH-HH
Confidence 899999999999995 33322 23445789999999999999999997 6899999999999999 999999 99
Q ss_pred HHHhhCCCCHHHHHHHHH-HHHh
Q psy9518 77 TQKMNQRPPMYHGRNELE-TLMT 98 (132)
Q Consensus 77 R~~i~~~~~~~e~~~~L~-~~~~ 98 (132)
|+.++++++.+|+.+.|+ .|++
T Consensus 285 r~~l~~~~~~~e~~~~l~~~~~~ 307 (309)
T PF01207_consen 285 RRELNKCKTLEEFLELLEEAFLK 307 (309)
T ss_dssp HHHHCCH-SHHHHHHHH------
T ss_pred HHHHHhhCCHHHHhhhhcccccc
Confidence 999999999999999999 6664
No 7
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=99.59 E-value=1.7e-15 Score=124.95 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=72.7
Q ss_pred CccccccccccchhHHhhc----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518 1 MIGRGALIKPWIFQEIKEK----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES 76 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l 76 (132)
|||||+++|||||.++.+. ..++|+..++++.+++|++.+.++ ..++..+|||+.||+| |+|+++ ++
T Consensus 221 MigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~~rk~~~~y~~----g~~~~~-~~ 291 (318)
T TIGR00742 221 MVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQ----GLSLNHITRHLLGLFQ----GKPGAK-QW 291 (318)
T ss_pred EECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHc----cCCCHH-HH
Confidence 8999999999999999763 234688899999999999997543 3589999999999999 999999 99
Q ss_pred HHHhhCCCCHH-HHHHHHHHHH
Q psy9518 77 TQKMNQRPPMY-HGRNELETLM 97 (132)
Q Consensus 77 R~~i~~~~~~~-e~~~~L~~~~ 97 (132)
|++++++.+.. +..+.|+..+
T Consensus 292 r~~~~~~~~~~~~~~~~~~~~~ 313 (318)
T TIGR00742 292 RRYLSENAPKAGAGIEVLETAL 313 (318)
T ss_pred HHHHHhcccCCCCcHHHHHHHH
Confidence 99999977663 3445555444
No 8
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=99.42 E-value=2.9e-13 Score=112.07 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=68.4
Q ss_pred CccccccccccchhHHhhc----ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518 1 MIGRGALIKPWIFQEIKEK----KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES 76 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~----~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l 76 (132)
|||||+++|||+|.++... ..++|+..++++.+.+|++.+.+ +|+ ++..+|||+.||++ |+|+++ ++
T Consensus 231 mIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~rk~~~~y~~----~~~~~~-~~ 301 (333)
T PRK11815 231 MIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLA-QGG---RLNHITRHMLGLFQ----GLPGAR-AW 301 (333)
T ss_pred EEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH-cCc---hHHHHHHHHHHHHc----CCCCHH-HH
Confidence 8999999999999999763 12357899999999999999987 464 59999999999999 999999 99
Q ss_pred HHHhhCCCCHH
Q psy9518 77 TQKMNQRPPMY 87 (132)
Q Consensus 77 R~~i~~~~~~~ 87 (132)
|++++++.+.+
T Consensus 302 r~~~~~~~~~~ 312 (333)
T PRK11815 302 RRYLSENAHKP 312 (333)
T ss_pred HHHHHhhcccC
Confidence 99999987663
No 9
>KOG2335|consensus
Probab=97.04 E-value=0.0013 Score=55.63 Aligned_cols=81 Identities=19% Similarity=0.209 Sum_probs=53.7
Q ss_pred CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHh
Q psy9518 1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKM 80 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i 80 (132)
|+|||++-|||||.. ..+ .+++ .+.+.++++...+++|+ . -...+|.|+..-+. .+-.-...+|+.+
T Consensus 231 M~arglL~NPa~F~~-~~~---~~~~---~~~~~~~l~~~~e~~g~-~-~~~~~~~Hl~~m~~----~~~~~~~~~r~~~ 297 (358)
T KOG2335|consen 231 MSARGLLYNPALFLT-AGY---GPTP---WGCVEEYLDIAREFGGL-S-SFSLIRHHLFKMLR----PLLSIHQDLRRDL 297 (358)
T ss_pred EecchhhcCchhhcc-CCC---CCCH---HHHHHHHHHHHHHcCCC-c-hhhHHHHHHHHHHH----HHHhhhHHHHHHH
Confidence 899999999999965 111 2333 36778899888888876 3 45666777665444 3222221478888
Q ss_pred hCCCCHHHHHHHHH
Q psy9518 81 NQRPPMYHGRNELE 94 (132)
Q Consensus 81 ~~~~~~~e~~~~L~ 94 (132)
+..++...+.+.++
T Consensus 298 ~~~~~~~~~~~~l~ 311 (358)
T KOG2335|consen 298 AALNSCESVIDFLE 311 (358)
T ss_pred hhccchhhHHHHHH
Confidence 88886666655555
No 10
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=81.28 E-value=2.1 Score=27.20 Aligned_cols=37 Identities=5% Similarity=-0.110 Sum_probs=27.6
Q ss_pred CCCcCcHHHHHHhhCCCCHHHHHHHHHHHHhcCCcchH
Q psy9518 68 YIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDW 105 (132)
Q Consensus 68 g~pga~~~lR~~i~~~~~~~e~~~~L~~~~~~~~~~~~ 105 (132)
-+.... .+|.++..+.|++++..+..+.=-....+.+
T Consensus 10 ~~~~d~-~L~~~l~~~~~~e~~~~lA~~~Gf~ft~~el 46 (64)
T TIGR03798 10 KVKTDP-DLREKLKAAEDPEDRVAIAKEAGFEFTGEDL 46 (64)
T ss_pred HHHcCH-HHHHHHHHcCCHHHHHHHHHHcCCCCCHHHH
Confidence 555666 8999999999999999988764333344444
No 11
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=73.03 E-value=1.3 Score=37.33 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=18.1
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
|+||+++.|||++.++.++.
T Consensus 317 ~~gR~~ladP~l~~k~~~g~ 336 (370)
T cd02929 317 GAARPSIADPFLPKKIREGR 336 (370)
T ss_pred eechHhhhCchHHHHHHcCC
Confidence 68999999999999998863
No 12
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=72.93 E-value=1.1 Score=37.24 Aligned_cols=20 Identities=15% Similarity=0.185 Sum_probs=18.2
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
|+||+++.|||+++++.++.
T Consensus 304 ~~gR~~l~dP~~~~k~~~g~ 323 (353)
T cd02930 304 SMARPFLADPDFVAKAAAGR 323 (353)
T ss_pred HhhHHHHHCccHHHHHHhCC
Confidence 68999999999999998864
No 13
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=70.28 E-value=8.7 Score=22.86 Aligned_cols=27 Identities=4% Similarity=-0.148 Sum_probs=22.6
Q ss_pred CCCcCcHHHHHHhhCCCCHHHHHHHHHH
Q psy9518 68 YIPVGLLESTQKMNQRPPMYHGRNELET 95 (132)
Q Consensus 68 g~pga~~~lR~~i~~~~~~~e~~~~L~~ 95 (132)
.+.... ++|.++..|.|++++..+..+
T Consensus 12 ~~~~d~-~l~~~l~~~~~~~e~~~lA~~ 38 (49)
T PF07862_consen 12 KVKSDP-ELREQLKACQNPEEVVALARE 38 (49)
T ss_pred HHhcCH-HHHHHHHhcCCHHHHHHHHHH
Confidence 455666 899999999999999988764
No 14
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=64.53 E-value=2.5 Score=35.80 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=18.3
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
|+||+++.|||+++++.++.
T Consensus 333 ~~gR~~ladP~l~~k~~~g~ 352 (382)
T cd02931 333 SLGRPLLADPDVVNKIRRGR 352 (382)
T ss_pred eechHhHhCccHHHHHHcCC
Confidence 68999999999999998864
No 15
>KOG2334|consensus
Probab=61.94 E-value=19 Score=31.78 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=31.4
Q ss_pred CccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy9518 1 MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGS 46 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~ge 46 (132)
||+|.|..||=||..-- .++..+...-.++....+-.+||.
T Consensus 240 miAR~A~~n~SiF~~eG-----~~~~~~~~~~fl~~a~~~dn~~~n 280 (477)
T KOG2334|consen 240 MIARAAESNPSIFREEG-----CLSEKEVIREFLRLAVQYDNHYGN 280 (477)
T ss_pred hhhHhhhcCCceeeecC-----CchHHHHHHHHHHHHHHHhhcccc
Confidence 89999999999999632 466666666667777677777776
No 16
>COG4804 Predicted nuclease of restriction endonuclease-like fold [General function prediction only]
Probab=54.51 E-value=9.2 Score=29.16 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCcccccccccc
Q psy9518 84 PPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKAN 129 (132)
Q Consensus 84 ~~~~e~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (132)
.=.-|...+.++|++.+.|.+.|..-+..++-+|.||.||-+.|-+
T Consensus 74 pyvLefL~lk~~~~E~dlE~~li~~lq~fllELg~gfafV~rqkri 119 (159)
T COG4804 74 PYVLEFLSLKRNYLEFDLEYALIQILQQFLLELGWGFAFVGRQKRI 119 (159)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEeeeeec
Confidence 3344566778888888889999999999999999999999887753
No 17
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.69 E-value=5.1 Score=36.85 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=16.9
Q ss_pred Cccccccccc-cchhHHhhc
Q psy9518 1 MIGRGALIKP-WIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnP-WIF~qi~~~ 19 (132)
|+||+++.|| |++.++.+.
T Consensus 715 ~~gR~~l~dP~~~~~~~~~~ 734 (765)
T PRK08255 715 ALARPHLADPAWTLHEAAEI 734 (765)
T ss_pred eEcHHHHhCccHHHHHHHHc
Confidence 7899999999 999998764
No 18
>PF14860 DrrA_P4M: DrrA phosphatidylinositol 4-phosphate binding domain; PDB: 2WWX_B 3JZ9_A 3N6O_B 3JZA_B 3L0M_B 3L0I_C.
Probab=48.01 E-value=31 Score=25.12 Aligned_cols=28 Identities=4% Similarity=0.131 Sum_probs=23.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCc
Q psy9518 75 ESTQKMNQRPPMYHGRNELETLMTSSNC 102 (132)
Q Consensus 75 ~lR~~i~~~~~~~e~~~~L~~~~~~~~~ 102 (132)
.+|..|+.++|++++.+.+.+|.++..+
T Consensus 53 dfk~~L~~~~~~~~l~~~v~efk~~~EY 80 (120)
T PF14860_consen 53 DFKDSLMEITTLQELKDKVKEFKQSPEY 80 (120)
T ss_dssp HHHHHHCC--SHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcChHH
Confidence 6899999999999999999999887654
No 19
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=38.65 E-value=56 Score=18.64 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHh
Q psy9518 86 MYHGRNELETLMTSSNCSDWIKISEML 112 (132)
Q Consensus 86 ~~e~~~~L~~~~~~~~~~~~~~~~~~~ 112 (132)
.+.+...++..+.....++|.++|+-|
T Consensus 11 ~~~L~~~ID~ALd~~D~e~F~~Ls~eL 37 (37)
T PF08858_consen 11 KEQLLELIDEALDNRDKEWFYELSEEL 37 (37)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 456778888899999999999999753
No 20
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.89 E-value=1.1e+02 Score=24.40 Aligned_cols=74 Identities=23% Similarity=0.243 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHhhCCCCHHHH--------------HHHHHHH
Q psy9518 31 DILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHG--------------RNELETL 96 (132)
Q Consensus 31 ~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i~~~~~~~e~--------------~~~L~~~ 96 (132)
++..+|....++....+.+-+...|++--.|+. +|-+-|-+....+-+ ++...++
T Consensus 67 ~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVS-----------QFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~L 135 (235)
T COG4778 67 QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVS-----------QFLRVIPRVSALDVVAEPLLARGVPREVARAKAADL 135 (235)
T ss_pred eEEEEeCcchhhhhccChHHHHHHHHhhhHHHH-----------HHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHH
Confidence 345677777777776557889999999888887 444545454444433 3333344
Q ss_pred HhcCCcchHHHHHHHhhcCCCCCcc
Q psy9518 97 MTSSNCSDWIKISEMLLGKIPAGFS 121 (132)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (132)
+...+ +.|-||++-|+-||
T Consensus 136 l~rLn------lperLW~LaPaTFS 154 (235)
T COG4778 136 LTRLN------LPERLWSLAPATFS 154 (235)
T ss_pred HHHcC------CCHHHhcCCCcccC
Confidence 44333 45999999999887
No 21
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=33.46 E-value=2.2e+02 Score=24.47 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=10.3
Q ss_pred cccccchhHHhh
Q psy9518 7 LIKPWIFQEIKE 18 (132)
Q Consensus 7 lGnPWIF~qi~~ 18 (132)
-+||++|+|+..
T Consensus 271 ~~np~~lRq~lE 282 (353)
T PF15053_consen 271 GGNPFLLRQILE 282 (353)
T ss_pred CCChHHHHHHHH
Confidence 579999999975
No 22
>COG1995 PdxA Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=29.70 E-value=34 Score=29.07 Aligned_cols=40 Identities=25% Similarity=0.193 Sum_probs=29.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCCcchHHHHHHHhhcCCCCCcccccccccc
Q psy9518 81 NQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLPKHKAN 129 (132)
Q Consensus 81 ~~~~~~~e~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (132)
.-.++.+.+...+++.-++ +-++.||+|+|.+|.|..+.+
T Consensus 219 lG~EE~diI~Paie~aR~~---------Gi~~~GPlpADT~F~~~~~~~ 258 (332)
T COG1995 219 LGREEIDIIIPAIEEARAE---------GIDLVGPLPADTLFHPAYLAN 258 (332)
T ss_pred CCchhHHHHHHHHHHHHHh---------CCcccCCCCcchhhhhhhhcc
Confidence 3445566666677665543 678999999999999988753
No 23
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=29.26 E-value=18 Score=28.41 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=16.5
Q ss_pred CccccccccccchhHHhh
Q psy9518 1 MIGRGALIKPWIFQEIKE 18 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~ 18 (132)
+||++++.||++|.++.+
T Consensus 101 iigt~~l~~p~~~~ei~~ 118 (253)
T PRK02083 101 SINSAAVANPELISEAAD 118 (253)
T ss_pred EEChhHhhCcHHHHHHHH
Confidence 589999999999999976
No 24
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=28.93 E-value=21 Score=23.06 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=20.0
Q ss_pred chHHHHHHHhhcCCCCCccccccccc
Q psy9518 103 SDWIKISEMLLGKIPAGFSFLPKHKA 128 (132)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (132)
..|...-+.|+++||+-+-+-+...+
T Consensus 5 ~~h~~~Fd~Ll~LIPAk~Y~~~~~~~ 30 (64)
T PF15459_consen 5 RAHSSFFDGLLSLIPAKYYYPDEDTS 30 (64)
T ss_pred HHHHHHHHHHHHhCChHhhcCCcccc
Confidence 34566678899999999888766665
No 25
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=26.94 E-value=2.6e+02 Score=20.66 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=23.9
Q ss_pred ccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHH
Q psy9518 6 ALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGL 41 (132)
Q Consensus 6 AlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~ 41 (132)
++|..|||++..... ..||..+....++..+....
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Ll~iAk 35 (150)
T cd07311 1 ALGASWIFQQTWGFD-QIPTNQDKLAYLKALLVCAK 35 (150)
T ss_pred CcchhHHHHHHhCcc-cCCCcccHHHHHHHHHHHHH
Confidence 578999999976532 24666777766666665554
No 26
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=26.55 E-value=76 Score=30.42 Aligned_cols=26 Identities=4% Similarity=-0.119 Sum_probs=24.4
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy9518 75 ESTQKMNQRPPMYHGRNELETLMTSS 100 (132)
Q Consensus 75 ~lR~~i~~~~~~~e~~~~L~~~~~~~ 100 (132)
.+|.++.+++|.+|+.+++++|+++.
T Consensus 251 ~Fr~~l~~A~s~eeL~~~I~efld~~ 276 (900)
T TIGR00834 251 VFHDAAYLADDRDDLLAGIDEFLDCS 276 (900)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 79999999999999999999999865
No 27
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=26.52 E-value=46 Score=26.95 Aligned_cols=37 Identities=14% Similarity=0.339 Sum_probs=27.8
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGS 46 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~ge 46 (132)
+|.|||+..+..+. ....+.++.+.+|++.+...+|-
T Consensus 255 ig~~~l~~~~~~g~---~~v~~~i~~l~~el~~~m~~~G~ 291 (299)
T cd02809 255 IGRPFLYGLAAGGE---AGVAHVLEILRDELERAMALLGC 291 (299)
T ss_pred EcHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHCC
Confidence 56699998765432 45567788889999998888884
No 28
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=26.16 E-value=1.2e+02 Score=21.91 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=38.3
Q ss_pred ccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHhh
Q psy9518 2 IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMN 81 (132)
Q Consensus 2 IGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i~ 81 (132)
|-+-+.|+||+..+.. |-...+-+|+..++ |+ |||-. +. .+|... .+++
T Consensus 32 v~v~Cqgrsw~VkRSy----------Edfr~LD~~LHrCv--yD---------RrfS~--L~----eLp~~~-~l~~--- 80 (115)
T cd07298 32 VQIACQGRSWIVKRSY----------EDFRVLDKHLHLCI--YD---------RRFSQ--LP----ELPRSD-SLKD--- 80 (115)
T ss_pred EEEEeCCCceEEEeeH----------HHHHHHHHHHHHHH--Hh---------hhhhc--cc----cCCCcc-cccc---
Confidence 3456788999988642 22457778887765 33 44433 45 666655 3332
Q ss_pred CCCCHHHHHHHHHHHHh
Q psy9518 82 QRPPMYHGRNELETLMT 98 (132)
Q Consensus 82 ~~~~~~e~~~~L~~~~~ 98 (132)
+.+.+..++..|+.
T Consensus 81 ---~~~~v~~~l~~YL~ 94 (115)
T cd07298 81 ---SPESVTQMLMAYLS 94 (115)
T ss_pred ---cHHHHHHHHHHHHH
Confidence 35667777777764
No 29
>PF14216 DUF4326: Domain of unknown function (DUF4326)
Probab=24.06 E-value=92 Score=21.08 Aligned_cols=14 Identities=36% Similarity=0.487 Sum_probs=11.3
Q ss_pred cccc-ccccccchhH
Q psy9518 2 IGRG-ALIKPWIFQE 15 (132)
Q Consensus 2 IGRG-AlGnPWIF~q 15 (132)
|||| -+||||-..+
T Consensus 18 IgR~s~wGNPf~~~~ 32 (86)
T PF14216_consen 18 IGRPSKWGNPFRVGE 32 (86)
T ss_pred eCCCCcCCCCCcCCC
Confidence 7888 5899998775
No 30
>PF10188 Oscp1: Organic solute transport protein 1; InterPro: IPR019332 Organic solute carrier protein 1, or Oscp1, is a family of proteins conserved from plants to humans. It is called organic solute transport protein or oxido-red-nitro domain-containing protein 1, however no reference could be find to confirm the function of the protein.
Probab=23.81 E-value=1.5e+02 Score=22.88 Aligned_cols=25 Identities=4% Similarity=-0.181 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhCC
Q psy9518 22 FDISSAERFDILKEYVNYGLEHWGS 46 (132)
Q Consensus 22 ~~ps~~e~~~~l~~Hl~~~~~~~ge 46 (132)
..+.+.+.+.+-..|++.+.++..+
T Consensus 88 ~~~~p~ell~vTlnHld~i~~~v~~ 112 (173)
T PF10188_consen 88 LCRHPKELLLVTLNHLDAIRDLVPD 112 (173)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHccC
Confidence 4688899999999999999987773
No 31
>PF15586 Imm47: Immunity protein 47
Probab=21.95 E-value=1.3e+02 Score=21.40 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=25.9
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCcchHHHHHHHh
Q psy9518 80 MNQRPPMYHGRNELETLMTSSNCSDWIKISEML 112 (132)
Q Consensus 80 i~~~~~~~e~~~~L~~~~~~~~~~~~~~~~~~~ 112 (132)
|+..=+++++.+.|++++.+-+.++|.++++-|
T Consensus 72 Iv~~yd~~~I~~~i~~~i~~c~~~~W~~~~~kL 104 (116)
T PF15586_consen 72 IVEEYDYDEIKKTIERIIESCEGDDWDEIAEKL 104 (116)
T ss_pred EEecCCHHHHHHHHHHHHHHccCCCHHHHHHHH
Confidence 445557888888888888877778888888765
No 32
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=21.10 E-value=74 Score=24.76 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred ccccccccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhC
Q psy9518 2 IGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWG 45 (132)
Q Consensus 2 IGRGAlGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~g 45 (132)
++|.+||..| + .-|++++.+.+...-+.+...|+
T Consensus 73 ~s~~vLG~~w--r--------~as~eQr~~F~~~F~~~Lv~tYa 106 (211)
T PRK15117 73 AGALVLGRYY--K--------DATPAQREAYFAAFREYLKQAYG 106 (211)
T ss_pred HHHHHhhhhh--h--------hCCHHHHHHHHHHHHHHHHHHHH
Confidence 5788888887 2 24666666665555555555554
No 33
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=20.54 E-value=97 Score=20.89 Aligned_cols=32 Identities=31% Similarity=0.368 Sum_probs=16.5
Q ss_pred Cccccccccc-----cchhHHhhcccCCCCHHHHHHHHHHHHHHHHH
Q psy9518 1 MIGRGALIKP-----WIFQEIKEKKLFDISSAERFDILKEYVNYGLE 42 (132)
Q Consensus 1 MIGRGAlGnP-----WIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~ 42 (132)
||-||++-=| |.|.|+ ++..+-+.+|++.+-.
T Consensus 35 miKRGS~DmPe~l~~~~~~Qi----------deeV~~LKe~IdaLNK 71 (79)
T PF10398_consen 35 MIKRGSQDMPEHLNMAFLAQI----------DEEVEKLKEHIDALNK 71 (79)
T ss_dssp HHHTTSS---TTS-HHHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred HhcccCCcCcccccHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 4556666544 666665 3445555666655543
No 34
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=20.10 E-value=1.4e+02 Score=19.03 Aligned_cols=60 Identities=10% Similarity=-0.111 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q psy9518 27 AERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSN 101 (132)
Q Consensus 27 ~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR~~i~~~~~~~e~~~~L~~~~~~~~ 101 (132)
+|+.+++.+-.+.+.+.|=. . .+.. +-|--- -. +++..|..++|-+++.++|.+.+....
T Consensus 2 ~E~~~~F~~~W~~~~~~f~d-~----~~~g-vDW~~~--------~~-~Y~p~v~~~~~~~el~~vl~eMl~eL~ 61 (70)
T PF14684_consen 2 AEWRQMFDEAWRLVRENFYD-P----DMHG-VDWDAV--------YD-RYRPLVPAAKTRDELYDVLNEMLGELN 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHSS--H----HHHH-HHHHHH--------HH-HHHGGGGG--SHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHhcCC-C----CCCC-CChHHH--------HH-HHHHHHhcCCCHHHHHHHHHHHHHHHC
Confidence 45666666666666555533 1 1111 144332 02 677888899999999999999887554
Done!