Query psy9518
Match_columns 132
No_of_seqs 134 out of 1368
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 21:40:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vhn_A Putative flavin oxidore 99.6 4.4E-16 1.5E-20 125.8 8.6 94 1-100 211-308 (318)
2 3b0p_A TRNA-dihydrouridine syn 99.5 9.8E-15 3.3E-19 119.9 4.0 90 1-99 223-315 (350)
3 1icp_A OPR1, 12-oxophytodienoa 85.4 0.2 6.8E-06 41.1 0.5 25 1-25 328-353 (376)
4 3sgz_A Hydroxyacid oxidase 2; 84.2 0.06 2.1E-06 44.2 -3.1 52 7-63 300-351 (352)
5 2hsa_B 12-oxophytodienoate red 82.9 0.29 1E-05 40.5 0.5 25 1-25 346-371 (402)
6 2r14_A Morphinone reductase; H 81.7 0.35 1.2E-05 39.7 0.5 25 1-25 326-351 (377)
7 2gou_A Oxidoreductase, FMN-bin 79.5 0.47 1.6E-05 38.6 0.6 25 1-25 320-345 (365)
8 3tjl_A NADPH dehydrogenase; OL 79.3 0.47 1.6E-05 39.6 0.5 19 1-19 344-362 (407)
9 4ab4_A Xenobiotic reductase B; 78.2 0.53 1.8E-05 38.5 0.5 20 1-20 306-325 (362)
10 1vyr_A Pentaerythritol tetrani 78.1 0.5 1.7E-05 38.4 0.4 20 1-20 321-340 (364)
11 3aty_A Tcoye, prostaglandin F2 77.8 0.55 1.9E-05 38.5 0.5 26 1-26 334-360 (379)
12 3gka_A N-ethylmaleimide reduct 76.3 0.64 2.2E-05 38.0 0.5 20 1-20 314-333 (361)
13 3k30_A Histamine dehydrogenase 73.2 0.64 2.2E-05 40.3 -0.3 19 1-19 322-340 (690)
14 2nli_A Lactate oxidase; flavoe 65.8 2.5 8.7E-05 34.3 1.8 46 7-57 312-357 (368)
15 3l5a_A NADH/flavin oxidoreduct 61.1 1.7 5.7E-05 36.2 -0.1 19 1-19 344-362 (419)
16 4ef8_A Dihydroorotate dehydrog 60.3 1.4 4.8E-05 35.9 -0.7 18 1-18 304-322 (354)
17 1o94_A Tmadh, trimethylamine d 58.3 1.9 6.5E-05 37.7 -0.3 19 1-19 319-337 (729)
18 1ps9_A 2,4-dienoyl-COA reducta 47.1 3.9 0.00013 35.2 -0.1 19 1-19 308-326 (671)
19 1kbi_A Cytochrome B2, L-LCR; f 40.2 3.2 0.00011 35.3 -1.7 48 7-59 431-478 (511)
20 1ep3_A Dihydroorotate dehydrog 31.1 9.7 0.00033 29.1 -0.1 17 1-17 268-284 (311)
21 1zke_A Hypothetical protein HP 25.9 58 0.002 21.2 2.9 33 1-43 37-74 (83)
22 1gjs_A Immunoglobulin G bindin 24.5 1.3E+02 0.0045 18.7 5.7 29 68-99 35-63 (65)
23 1gox_A (S)-2-hydroxy-acid oxid 23.9 8.6 0.00029 31.0 -1.7 47 7-58 308-354 (370)
24 3tjx_A Dihydroorotate dehydrog 22.8 30 0.001 27.3 1.4 17 1-17 304-321 (354)
25 2fs1_A PSD-1; solution structu 22.6 1.4E+02 0.0047 18.1 5.3 30 68-100 24-53 (56)
26 3n6o_A Guanine nucleotide exch 22.4 51 0.0017 25.8 2.5 27 75-101 238-264 (311)
27 1hyn_P BAND 3 anion transport 22.0 64 0.0022 26.4 3.2 26 75-100 293-318 (379)
28 2nzl_A Hydroxyacid oxidase 1; 20.1 43 0.0015 27.3 1.8 45 7-56 335-379 (392)
No 1
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=99.64 E-value=4.4e-16 Score=125.83 Aligned_cols=94 Identities=19% Similarity=0.332 Sum_probs=86.7
Q ss_pred CccccccccccchhHHhh----cccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHH
Q psy9518 1 MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLES 76 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~----~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~l 76 (132)
||||+++.|||+|.++.. +..++|+..++++++.+|++...+++|+ +.++..+|||+.||++ ++|+++ ++
T Consensus 211 ~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~----~~~~~~-~~ 284 (318)
T 1vhn_A 211 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGE-RKAVVEMRKFLAGYTK----DLKGAR-RF 284 (318)
T ss_dssp EESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHTTHHHHTT----TCTTHH-HH
T ss_pred EECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHh----cCCChH-HH
Confidence 799999999999999987 4345689999999999999999999997 6799999999999999 999999 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcC
Q psy9518 77 TQKMNQRPPMYHGRNELETLMTSS 100 (132)
Q Consensus 77 R~~i~~~~~~~e~~~~L~~~~~~~ 100 (132)
|++|++++|.+++.++|++++.+.
T Consensus 285 r~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
T 1vhn_A 285 REKVMKIEEVQILKEMFYNFIKEV 308 (318)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998643
No 2
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=99.49 E-value=9.8e-15 Score=119.88 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=81.1
Q ss_pred CccccccccccchhHHhhc---ccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhhcccCCCCcCcHHHH
Q psy9518 1 MIGRGALIKPWIFQEIKEK---KLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLLEST 77 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~---~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k~~~~g~pga~~~lR 77 (132)
||||++++|||+|.++.+. ..+.|+..++++.+++|++...+ +|+ ++..+|||+.||++ |+|+++ ++|
T Consensus 223 ~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~~~~~kh~~~~~~----g~~~~~-~~r 293 (350)
T 3b0p_A 223 MLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVL-KGT---PPWAVLRHMLNLFR----GRPKGR-LWR 293 (350)
T ss_dssp EECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHH-HTC---CHHHHHTTSTTTTT----TSTTHH-HHH
T ss_pred EECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-cCc---cHHHHHHHHHHHHc----cCCCHH-HHH
Confidence 7999999999999999863 23568999999999999999887 675 58999999999999 999999 999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhc
Q psy9518 78 QKMNQRPPMYHGRNELETLMTS 99 (132)
Q Consensus 78 ~~i~~~~~~~e~~~~L~~~~~~ 99 (132)
+.|++++|++++.++|+++...
T Consensus 294 ~~l~~~~~~~~~~~~l~~~~~~ 315 (350)
T 3b0p_A 294 RLLSEGRSLQALDRALRLMEEE 315 (350)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHhhh
Confidence 9999999999999999998643
No 3
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=85.39 E-value=0.2 Score=41.06 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=20.2
Q ss_pred CccccccccccchhHHhhcc-cCCCC
Q psy9518 1 MIGRGALIKPWIFQEIKEKK-LFDIS 25 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~-~~~ps 25 (132)
||||+++.|||++.++.++. +.+|+
T Consensus 328 ~~gR~~l~~P~l~~k~~~g~~l~~~~ 353 (376)
T 1icp_A 328 AYGRLFISNPDLPKRFELNAPLNKYN 353 (376)
T ss_dssp EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred eecHHHHhCccHHHHHHcCCCCCCCC
Confidence 68999999999999998763 34444
No 4
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=84.24 E-value=0.06 Score=44.25 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=42.0
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHhh
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLS 63 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~wY~k 63 (132)
+|.||||.....+. +...+.++.+.+|++.....+|. ..+.++|+++.||+|
T Consensus 300 iGr~~l~~l~~~G~---~gv~~~l~~l~~el~~~m~~~G~--~~i~el~~~~~~y~k 351 (352)
T 3sgz_A 300 LGRPILWGLACKGE---DGVKEVLDILTAELHRCMTLSGC--QSVAEISPDLIQFSR 351 (352)
T ss_dssp ESHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--SBGGGCCGGGBSSCC
T ss_pred ECHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCC--CcHHHHhhhcchhcc
Confidence 57799998664442 44567889999999999999996 368999999999986
No 5
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Probab=82.89 E-value=0.29 Score=40.47 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=20.3
Q ss_pred CccccccccccchhHHhhcc-cCCCC
Q psy9518 1 MIGRGALIKPWIFQEIKEKK-LFDIS 25 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~-~~~ps 25 (132)
||||+++.|||++.++.++. +.+|+
T Consensus 346 ~igR~~l~dP~l~~k~~~g~~l~~~~ 371 (402)
T 2hsa_B 346 SYGRLFISNPDLVMRIKLNAPLNKYN 371 (402)
T ss_dssp EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred eecHHHHhCchHHHHHHhCCCCCCCC
Confidence 68999999999999998863 34454
No 6
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=81.68 E-value=0.35 Score=39.66 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=20.1
Q ss_pred CccccccccccchhHHhhcc-cCCCC
Q psy9518 1 MIGRGALIKPWIFQEIKEKK-LFDIS 25 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~-~~~ps 25 (132)
||||+++.|||++.++.++. +.+|+
T Consensus 326 ~igR~~l~~P~l~~k~~~g~~l~~~~ 351 (377)
T 2r14_A 326 AFGRPFIANPDLPERFRLGAALNEPD 351 (377)
T ss_dssp EESHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred eecHHHHhCchHHHHHHcCCCCCCCC
Confidence 68999999999999998763 33444
No 7
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*
Probab=79.48 E-value=0.47 Score=38.62 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=20.0
Q ss_pred CccccccccccchhHHhhcc-cCCCC
Q psy9518 1 MIGRGALIKPWIFQEIKEKK-LFDIS 25 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~-~~~ps 25 (132)
||||+++.|||++.++..+. +.+|+
T Consensus 320 ~igR~~i~~P~l~~~~~~g~~l~~~~ 345 (365)
T 2gou_A 320 GFGRPFIANPDLPERLRHGYPLAEHV 345 (365)
T ss_dssp ECCHHHHHCTTHHHHHHHTCCCCCCC
T ss_pred hhcHHHHhCchHHHHHHcCCCCCCCc
Confidence 68999999999999998764 23444
No 8
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=79.32 E-value=0.47 Score=39.61 Aligned_cols=19 Identities=11% Similarity=0.116 Sum_probs=17.7
Q ss_pred CccccccccccchhHHhhc
Q psy9518 1 MIGRGALIKPWIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~ 19 (132)
||||+++.|||++.++..+
T Consensus 344 a~GR~~iaNPdL~~ri~~g 362 (407)
T 3tjl_A 344 GFSRYFTSNPNLVWKLRDG 362 (407)
T ss_dssp ECSHHHHHCTTHHHHHHHT
T ss_pred EeChhhhhCchHHHHHHcC
Confidence 6899999999999999886
No 9
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=78.18 E-value=0.53 Score=38.52 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=18.2
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
||||+++.|||++.++..+.
T Consensus 306 ~iGR~~lanPdl~~k~~~g~ 325 (362)
T 4ab4_A 306 AFGVPFIANPDLPARLAADA 325 (362)
T ss_dssp EESHHHHHCTTHHHHHHTTC
T ss_pred EECHHhHhCcHHHHHHHcCC
Confidence 68999999999999999863
No 10
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=78.14 E-value=0.5 Score=38.43 Aligned_cols=20 Identities=20% Similarity=0.436 Sum_probs=18.0
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
||||+++.|||++.++.++.
T Consensus 321 ~~gR~~l~~P~~~~~~~~g~ 340 (364)
T 1vyr_A 321 AFGRDYIANPDLVARLQKKA 340 (364)
T ss_dssp EESHHHHHCTTHHHHHHHTC
T ss_pred EECHHHHhChhHHHHHHcCC
Confidence 68999999999999998763
No 11
>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*
Probab=77.75 E-value=0.55 Score=38.51 Aligned_cols=26 Identities=12% Similarity=0.182 Sum_probs=20.7
Q ss_pred CccccccccccchhHHhhcc-cCCCCH
Q psy9518 1 MIGRGALIKPWIFQEIKEKK-LFDISS 26 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~-~~~ps~ 26 (132)
||||+++.|||++.++.++. +.+++.
T Consensus 334 ~igR~~l~~P~l~~k~~~g~~l~~~~~ 360 (379)
T 3aty_A 334 AFGAKFIANPDLVERAQQNWPLNEPRP 360 (379)
T ss_dssp EESHHHHHCTTHHHHHHHTCCCCCCCG
T ss_pred EecHHHHhCcHHHHHHHcCCCCCCCCH
Confidence 68999999999999998763 345553
No 12
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=76.29 E-value=0.64 Score=37.99 Aligned_cols=20 Identities=15% Similarity=0.136 Sum_probs=18.2
Q ss_pred CccccccccccchhHHhhcc
Q psy9518 1 MIGRGALIKPWIFQEIKEKK 20 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~~ 20 (132)
||||+++.|||++.++.++.
T Consensus 314 ~iGR~~ladPdl~~k~~~g~ 333 (361)
T 3gka_A 314 AWGKLFIANPDLPRRFKLNA 333 (361)
T ss_dssp EESHHHHHCTTHHHHHHHTC
T ss_pred EECHHhHhCcHHHHHHHhCC
Confidence 68999999999999998863
No 13
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=73.17 E-value=0.64 Score=40.28 Aligned_cols=19 Identities=16% Similarity=0.410 Sum_probs=17.7
Q ss_pred CccccccccccchhHHhhc
Q psy9518 1 MIGRGALIKPWIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~ 19 (132)
|+||++++|||++.++.++
T Consensus 322 ~~gR~~~~~P~~~~~~~~g 340 (690)
T 3k30_A 322 GAARPSIADPFLPNKIRDG 340 (690)
T ss_dssp EESHHHHHCTTHHHHHHTT
T ss_pred EEcHHhHhCccHHHHHHcC
Confidence 6899999999999999885
No 14
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=65.80 E-value=2.5 Score=34.33 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=36.8
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRF 57 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~ 57 (132)
+|+||++.....+. ....+.++.+.+|++....++|. ..+.++|+.
T Consensus 312 iGr~~l~~~~~~G~---~gv~~~l~~l~~el~~~m~~~G~--~~i~~l~~~ 357 (368)
T 2nli_A 312 LGRPVLFGLALGGW---QGAYSVLDYFQKDLTRVMQLTGS--QNVEDLKGL 357 (368)
T ss_dssp ECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--SSHHHHHTC
T ss_pred ECHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHhCC--cCHHHhccc
Confidence 57799999765542 45678899999999999999996 478888764
No 15
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=61.10 E-value=1.7 Score=36.17 Aligned_cols=19 Identities=11% Similarity=0.197 Sum_probs=17.4
Q ss_pred CccccccccccchhHHhhc
Q psy9518 1 MIGRGALIKPWIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~ 19 (132)
|+||+++.||+++.++..+
T Consensus 344 aiGR~~IanPdlv~ki~~G 362 (419)
T 3l5a_A 344 GMSSPFVTEPDFVHKLAEQ 362 (419)
T ss_dssp EESTHHHHCTTHHHHHHTT
T ss_pred HHHHHHHHCcHHHHHHHcC
Confidence 6899999999999999875
No 16
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=60.26 E-value=1.4 Score=35.90 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=16.0
Q ss_pred Ccccccccc-ccchhHHhh
Q psy9518 1 MIGRGALIK-PWIFQEIKE 18 (132)
Q Consensus 1 MIGRGAlGn-PWIF~qi~~ 18 (132)
|||||++.| ||+|.++.+
T Consensus 304 ~vgra~l~~GP~~~~~i~~ 322 (354)
T 4ef8_A 304 QVGTALQEEGPSIFERLTS 322 (354)
T ss_dssp EECHHHHHHCTTHHHHHHH
T ss_pred EEhHHHHHhCHHHHHHHHH
Confidence 799999999 999999863
No 17
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=58.28 E-value=1.9 Score=37.73 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=17.7
Q ss_pred CccccccccccchhHHhhc
Q psy9518 1 MIGRGALIKPWIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~ 19 (132)
|+||+++.|||++.++.++
T Consensus 319 ~~gR~~l~~P~~~~~~~~g 337 (729)
T 1o94_A 319 GCARPSIADPFLPQKVEQG 337 (729)
T ss_dssp EESHHHHHCTTHHHHHHTT
T ss_pred EeCchhhcCchHHHHHHcC
Confidence 6899999999999999886
No 18
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=47.11 E-value=3.9 Score=35.18 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=17.4
Q ss_pred CccccccccccchhHHhhc
Q psy9518 1 MIGRGALIKPWIFQEIKEK 19 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~~~ 19 (132)
|+||+++.|||++.++.++
T Consensus 308 ~~gR~~l~~P~l~~k~~~g 326 (671)
T 1ps9_A 308 SMARPFLADAELLSKAQSG 326 (671)
T ss_dssp EESTHHHHCTTHHHHHHTT
T ss_pred EeCHHHHhCcHHHHHHHcC
Confidence 6899999999999999875
No 19
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=40.24 E-value=3.2 Score=35.34 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=36.2
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHH
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLL 59 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~~ 59 (132)
+|+||+|.....+. +...+.++.+.+|++....++|. ..+.++|+++-
T Consensus 431 iGr~~l~~~~~~G~---~gv~~~l~~l~~el~~~m~~~G~--~~i~el~~~~l 478 (511)
T 1kbi_A 431 LGRPFLYANSCYGR---NGVEKAIEILRDEIEMSMRLLGV--TSIAELKPDLL 478 (511)
T ss_dssp ECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--CBGGGCCGGGE
T ss_pred ECHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHhCC--CcHHHHhHHHh
Confidence 67799998765442 45567888999999999999996 36777777643
No 20
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=31.12 E-value=9.7 Score=29.12 Aligned_cols=17 Identities=18% Similarity=0.532 Sum_probs=14.8
Q ss_pred CccccccccccchhHHh
Q psy9518 1 MIGRGALIKPWIFQEIK 17 (132)
Q Consensus 1 MIGRGAlGnPWIF~qi~ 17 (132)
||||+.+.+|+++.++.
T Consensus 268 ~vg~~~l~~p~~~~~i~ 284 (311)
T 1ep3_A 268 AVGTANFADPFVCPKII 284 (311)
T ss_dssp EECTHHHHCTTHHHHHH
T ss_pred EECHHHHcCcHHHHHHH
Confidence 58999999999998875
No 21
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=25.89 E-value=58 Score=21.16 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=22.1
Q ss_pred Cccccccccc-----cchhHHhhcccCCCCHHHHHHHHHHHHHHHHHh
Q psy9518 1 MIGRGALIKP-----WIFQEIKEKKLFDISSAERFDILKEYVNYGLEH 43 (132)
Q Consensus 1 MIGRGAlGnP-----WIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~ 43 (132)
||-||++-=| |.|.|+. +..+-+.+|++.+-..
T Consensus 37 miKRGS~DmPe~L~~~~~~Qid----------eeV~~LKe~IdaLNK~ 74 (83)
T 1zke_A 37 EIKRGSMDMPKGVNEAFFTQLS----------EEVERLKELINALNKI 74 (83)
T ss_dssp HHHTTSSCCCTTCCGGGHHHHH----------HHHHHHHHHHHHHHHH
T ss_pred heeccCccCccccCHHHHHHHH----------HHHHHHHHHHHHHHHH
Confidence 5678887655 8888873 5556677777766543
No 22
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=24.53 E-value=1.3e+02 Score=18.67 Aligned_cols=29 Identities=3% Similarity=0.025 Sum_probs=24.7
Q ss_pred CCCcCcHHHHHHhhCCCCHHHHHHHHHHHHhc
Q psy9518 68 YIPVGLLESTQKMNQRPPMYHGRNELETLMTS 99 (132)
Q Consensus 68 g~pga~~~lR~~i~~~~~~~e~~~~L~~~~~~ 99 (132)
|+ +. -+.+.|++++|.+++..+-++++..
T Consensus 35 GI--sd-~y~~~In~AkTvEgV~aLk~Eilka 63 (65)
T 1gjs_A 35 GV--SD-YYKNLINNAKTVEGVKALIDEILAA 63 (65)
T ss_dssp TC--CH-HHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred Cc--cH-HHHHhhhccchHHHHHHHHHHHHhc
Confidence 67 55 7889999999999999988887754
No 23
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=23.85 E-value=8.6 Score=31.01 Aligned_cols=47 Identities=13% Similarity=0.255 Sum_probs=34.6
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHH
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFL 58 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK~~ 58 (132)
+|.||++.....+. ....+.++.+.+|++....++|. ..+.++|++.
T Consensus 308 iGr~~l~~~~~~G~---~gv~~~~~~l~~el~~~m~~~G~--~~i~el~~~~ 354 (370)
T 1gox_A 308 IGRPVVFSLAAEGE---AGVKKVLQMMRDEFELTMALSGC--RSLKEISRSH 354 (370)
T ss_dssp ECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--SBTTTCCGGG
T ss_pred ecHHHHHHHhhccH---HHHHHHHHHHHHHHHHHHHHhCC--CCHHHhhhcc
Confidence 56788887654331 34567888999999999999996 4677777764
No 24
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=22.82 E-value=30 Score=27.32 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.4
Q ss_pred Ccccccc-ccccchhHHh
Q psy9518 1 MIGRGAL-IKPWIFQEIK 17 (132)
Q Consensus 1 MIGRGAl-GnPWIF~qi~ 17 (132)
|||+|.+ .+||+|.+|.
T Consensus 304 qv~Ta~~y~GP~~~~~I~ 321 (354)
T 3tjx_A 304 QVGTALQEEGPSIFERLT 321 (354)
T ss_dssp EECHHHHHHCTTHHHHHH
T ss_pred EEChhhhhcCchHHHHHH
Confidence 6788864 7899998876
No 25
>2fs1_A PSD-1; solution structure, protein binding; NMR {Finegoldia magna atcc 29328}
Probab=22.59 E-value=1.4e+02 Score=18.10 Aligned_cols=30 Identities=10% Similarity=-0.011 Sum_probs=25.5
Q ss_pred CCCcCcHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy9518 68 YIPVGLLESTQKMNQRPPMYHGRNELETLMTSS 100 (132)
Q Consensus 68 g~pga~~~lR~~i~~~~~~~e~~~~L~~~~~~~ 100 (132)
|+ +. -+.+.|+.++|++.+..+-++++...
T Consensus 24 GI--sd-~y~~~In~AkTvEgv~~Lk~Eil~a~ 53 (56)
T 2fs1_A 24 GI--GD-YYIKLINNAKTVEGVESLKNEILKAL 53 (56)
T ss_dssp CC--CH-HHHHHHHTCSSSHHHHHHHHHHHHTC
T ss_pred Cc--hH-HHHHHhhhhhhHHHHHHHHHHHHHhc
Confidence 67 56 78999999999999999988877653
No 26
>3n6o_A Guanine nucleotide exchange factor; phosphatidylinositol-4-phosphate, membrane, RAB, LCV, P rabgef, signaling protein; 2.50A {Legionella pneumophila} PDB: 3l0m_A
Probab=22.44 E-value=51 Score=25.81 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=23.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCC
Q psy9518 75 ESTQKMNQRPPMYHGRNELETLMTSSN 101 (132)
Q Consensus 75 ~lR~~i~~~~~~~e~~~~L~~~~~~~~ 101 (132)
.||..|..++|.+++.+.+.+|.++.+
T Consensus 238 dFKdsL~eittlqeLkd~V~EFkqs~E 264 (311)
T 3n6o_A 238 DFKDKLAEATDEQSLKQIVAELKSKDE 264 (311)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcChH
Confidence 588899999999999999999887654
No 27
>1hyn_P BAND 3 anion transport protein; membrane protein; 2.60A {Homo sapiens} SCOP: d.112.1.2
Probab=21.99 E-value=64 Score=26.43 Aligned_cols=26 Identities=12% Similarity=-0.083 Sum_probs=24.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcC
Q psy9518 75 ESTQKMNQRPPMYHGRNELETLMTSS 100 (132)
Q Consensus 75 ~lR~~i~~~~~~~e~~~~L~~~~~~~ 100 (132)
.++..+.+++|.+++.++|++|+.+.
T Consensus 293 ~F~~~l~~A~~~eeLl~~I~efld~s 318 (379)
T 1hyn_P 293 VFRIDAYMAQSRGELLHSLEGFLDCS 318 (379)
T ss_dssp HHHHHHHHCSSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhcce
Confidence 78999999999999999999998865
No 28
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=20.09 E-value=43 Score=27.28 Aligned_cols=45 Identities=16% Similarity=0.257 Sum_probs=32.6
Q ss_pred cccccchhHHhhcccCCCCHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH
Q psy9518 7 LIKPWIFQEIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRR 56 (132)
Q Consensus 7 lGnPWIF~qi~~~~~~~ps~~e~~~~l~~Hl~~~~~~~gee~~~~~~~RK 56 (132)
+|+||++.....+. ....+.++.+.++++.....+|. ..+.++|+
T Consensus 335 iGr~~l~~~~~~g~---~gv~~~l~~l~~el~~~m~~~G~--~~i~el~~ 379 (392)
T 2nzl_A 335 VGRPIVWGLAFQGE---KGVQDVLEILKEEFRLAMALSGC--QNVKVIDK 379 (392)
T ss_dssp ECHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTC--SBGGGCCG
T ss_pred ECHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHhCC--CcHHHHhh
Confidence 57799998765432 35567888999999999998886 35555544
Done!