RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9518
(132 letters)
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown
function; HET: FMN; 1.59A {Thermotoga maritima} SCOP:
c.1.4.1
Length = 318
Score = 51.0 bits (123), Expect = 1e-08
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 1 MIGRGALIKPWIFQEIKE----KKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRR 56
++ RGA+ +PWIF++IK+ K + S E + ++ ++ G + + V R+
Sbjct: 211 LVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKG-ERKAVVEMRK 269
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN;
1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Length = 350
Score = 40.3 bits (95), Expect = 6e-05
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 1 MIGRGALIKPWIFQEIKEKKLFDISSA-ERFDILKEYVNYGLEHWGSDTRGVETTR 55
M+GR P++ +E ++++F + R ++ + Y E T R
Sbjct: 223 MLGRAVYEDPFVLEEA-DRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLR 277
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.13
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 28/122 (22%)
Query: 12 IFQE---IKEKKL----FDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSF 64
+F I L FD+ ++ ++ + Y L + +
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL----------------VEKQPKE 423
Query: 65 LHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKISEMLLGKIPAGFSFLP 124
IP LE K+ + H R+ ++ I L +S +
Sbjct: 424 STISIPSIYLELKVKLENEYAL-H-RSIVDHYNIPKTFDSDDLIPPYLDQYF---YSHIG 478
Query: 125 KH 126
H
Sbjct: 479 HH 480
Score = 28.7 bits (63), Expect = 0.63
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 11 WIFQEIKEKKLFDISSAERFDIL---KEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHR 67
++ Q+I+ +S + L K Y Y ++ R V FL + L
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561
Query: 68 Y 68
Sbjct: 562 S 562
Score = 26.7 bits (58), Expect = 2.8
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 50 GVETTRRFLLEWLSFLHRYIPVGLLESTQKM-NQRPPMYHGRNE 92
V+ F + WL+ + P +LE QK+ Q P + R++
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral
virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Length = 274
Score = 28.5 bits (63), Expect = 0.52
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 64 FLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDW-IKISEMLLGKIPAGFSF 122
F R +P+G+L Q + L L+ + S S + K P + +
Sbjct: 36 FYDRAVPIGMLRPGQNIESTFVYQENDLRLNCLLLTPLPSFCPDSTSGPVKTKAPVQWRW 95
Query: 123 LPKHKANSWK 132
+ ++
Sbjct: 96 VRSGGTTNFP 105
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate
pathway, isoprenoid biosynthesis, transferase; HET: ADP;
2.00A {Escherichia coli} PDB: 1oj4_A*
Length = 283
Score = 28.3 bits (64), Expect = 0.73
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 81 NQRPPMYHGRNELETLMTSSNCSDWIKISE 110
QR YH L+TL + D I I
Sbjct: 19 GQRADGYH---TLQTLFQFLDYGDTISIEL 45
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus
thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 27.9 bits (63), Expect = 1.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 82 QRPPMYHGRNELETLMTSSNCSDWIKIS 109
+R YH EL TL + +D + +
Sbjct: 18 RREDGYH---ELHTLFAPFSLADRLVVE 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.8
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 39/102 (38%)
Query: 39 YGLEHW--------GSDTRGVETTRRFLLEWLSFLHRYIPVG------LLESTQKMNQ-- 82
YGL G D + + R L F +R++PV LL +
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKL----KFSNRFLPVASPFHSHLLVPASDLINKD 442
Query: 83 -------------RPPMYH---GRN--ELETLMTSSNCSDWI 106
+ P+Y G + L ++ D I
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV-DCI 483
Score = 26.6 bits (58), Expect = 3.3
Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 56/140 (40%)
Query: 19 KKLFDISSAERF----------DILKE-----------------YVNYGLEHWGSDTRGV 51
+ +++ A+ DI+ NY + + G
Sbjct: 1643 QDVWN--RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 52 ETTRRFLLEWLSFLHRYI---PVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSDWIKI 108
T + E Y GLL +TQ +P L
Sbjct: 1701 LKTEKIFKEINEHSTSYTFRSEKGLLSATQ--FTQP----------ALTLME-----KAA 1743
Query: 109 SEMLL--GKIP-----AGFS 121
E L G IP AG S
Sbjct: 1744 FEDLKSKGLIPADATFAGHS 1763
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Length = 271
Score = 27.1 bits (61), Expect = 1.9
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 87 YHGRNELETLMTSSNCSDWIKISE 110
YH E+ TL D I I E
Sbjct: 27 YH---EILTLYQEIPFYDEIYIRE 47
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase;
HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB:
3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Length = 306
Score = 26.4 bits (59), Expect = 3.0
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 87 YHGRNELETLMTSSNCSDWIKISE 110
YH EL T+ + + D + +
Sbjct: 28 YH---ELTTVFHAVSLVDEVTVRN 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.434
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,101,485
Number of extensions: 109618
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 14
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)