RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9518
         (132 letters)



>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus
           lactis, isozyme B [TaxId: 1358]}
          Length = 311

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 1   MIGRGALIKPWIFQEIKEKKLFDISSAERFDILKEYV 37
            +G      P++  +I   KL ++    R + L+  +
Sbjct: 268 AVGTANFADPFVCPKII-DKLPELMDQYRIESLESLI 303


>d1j3ea_ d.228.1.1 (A:) Replication modulator SeqA, C-terminal
           DNA-binding domain {Escherichia coli [TaxId: 562]}
          Length = 115

 Score = 26.7 bits (59), Expect = 0.63
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)

Query: 56  RFLLEWLSFLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSN 101
           RF+L  LS L+        E+T+ ++ R  +Y   +E +TL+ + N
Sbjct: 24  RFML-LLSTLYSLDAQAFAEATESLHGRTRVYFAADE-QTLLKNGN 67


>d1xkna_ d.126.1.6 (A:) Putative peptidyl-arginine deiminase
           {Chlorobium tepidum [TaxId: 1097]}
          Length = 353

 Score = 24.3 bits (52), Expect = 5.3
 Identities = 13/87 (14%), Positives = 28/87 (32%)

Query: 15  EIKEKKLFDISSAERFDILKEYVNYGLEHWGSDTRGVETTRRFLLEWLSFLHRYIPVGLL 74
            +   +   +  AE    L+ Y+      W  D    + T   + +   F++    V  +
Sbjct: 174 LLNPNRNPSLGKAEIEAQLRRYLGIEKVLWLGDGIAGDDTDGHVDDMARFVNENTVVIAV 233

Query: 75  ESTQKMNQRPPMYHGRNELETLMTSSN 101
           E   +     P+      L+T+     
Sbjct: 234 EEDPEDENYKPLRENYELLKTMTGLDG 260


>d1tme1_ b.121.4.1 (1:) Theilovirus capsid proteins {Theiler's
           murine encephalomyelitis virus, strain da [TaxId:
           12124]}
          Length = 256

 Score = 24.1 bits (52), Expect = 6.5
 Identities = 9/41 (21%), Positives = 15/41 (36%)

Query: 64  FLHRYIPVGLLESTQKMNQRPPMYHGRNELETLMTSSNCSD 104
           F  R +P+G+L   Q +            L  L+ +   S 
Sbjct: 36  FYDRAVPIGMLRPGQNIESTFVYQENDLRLNCLLLTPLPSF 76


>d1qf5a_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA
          {Escherichia coli [TaxId: 562]}
          Length = 431

 Score = 24.2 bits (52), Expect = 6.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 1  MIGRGALIKPWIF-QEIKEKKLFDISSAERF 30
          +IG G ++ P    +E+KE +   I   ER 
Sbjct: 67 IIGNGVVLSPAALMKEMKELEDRGIPVRERL 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.434 

Gapped
Lambda     K      H
   0.267   0.0516    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,196
Number of extensions: 22841
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 8
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)