BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy952
(573 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 219 bits (559), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 5/270 (1%)
Query: 5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
D +CK +P L+F+N+ +R + ++Y+L+ +L N +A+DFH++ +++DV
Sbjct: 77 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV 135
Query: 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
I R+ + + E V+ GLAVDWV KLYW D + +++VA LDG +RK
Sbjct: 136 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195
Query: 125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L +++ PR I LHP G +Y++ W I MDGS R + + + WPN LT+
Sbjct: 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTI 253
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
DY R+YW DA I +LDG H+ VIS Q +PH FA+T+FED +YWTDW+TKSIN
Sbjct: 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWHTKSIN 312
Query: 244 RADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
A+KF G++ ++RN H P DIH HP +
Sbjct: 313 SANKFTGKNQEIIRNKLHFPMDIHTLHPQR 342
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQ 400
+E V C KC C C+TGY+L EDG+ C D++EC E+ G CSQ
Sbjct: 3 EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE-GYCSQ 55
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
+V+ECA E C C ++ + C C GY+L D ++C +
Sbjct: 43 DVNECA--EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKAL 84
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 5/270 (1%)
Query: 5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
D +CK +P L+F+N+ +R + ++Y+L+ +L N +A+DFH++ +++DV
Sbjct: 34 DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV 92
Query: 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
I R+ + + E V+ GLAVDWV KLYW D + +++VA LDG +RK
Sbjct: 93 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152
Query: 125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L +++ PR I LHP G +Y++ W I MDGS R + + + WPN LT+
Sbjct: 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTI 210
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
DY R+YW DA I +LDG H+ VIS Q +PH FA+T+FED +YWTDW+TKSIN
Sbjct: 211 DYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWHTKSIN 269
Query: 244 RADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
A+KF G++ ++RN H P DIH HP +
Sbjct: 270 SANKFTGKNQEIIRNKLHFPMDIHTLHPQR 299
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
V+ECA E C C ++ + C C GY+L D ++C +
Sbjct: 1 VNECA--EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKAL 41
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
CK SI +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ +
Sbjct: 370 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 428
Query: 68 TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
I +++ G + + VI D +GLAVDW+ +YW D + VA+ G RK
Sbjct: 429 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 488
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
TL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +T
Sbjct: 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 546
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
LD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++
Sbjct: 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 606
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
I A++ G D +L P D+ ++H L
Sbjct: 607 IFSANRLTGSDVNLLAENLLSPEDMVLFHQL 637
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 113/272 (41%), Gaps = 54/272 (19%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
C ++F+C +GKCI Y VC+ ++C+D SDE + K CG + V+
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR-VNRCIPQ 64
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLW 428
+ C DG+ D D ++ G C + C +D EF C +G CI + +
Sbjct: 65 FWRC--------DGQ--VDCDNGSDEQG--------CPPKTCSQD-EFRCHDGKCISRQF 105
Query: 429 VCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 488
VC E + C C +C T CIP+ CD DC DGSDE P
Sbjct: 106 VCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST---CIPQLWACDNDPDCEDGSDEWP 160
Query: 489 QNC-----------PLESL------------GSVCNGVNDCKDNITSDETHARCPSNITC 525
Q C P + C+G DCKD SDE + + TC
Sbjct: 161 QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDK--SDEENC---AVATC 215
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
P +C++ N C+ CD + DC DMSDE
Sbjct: 216 RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 246
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 88/231 (38%), Gaps = 38/231 (16%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG 367
TCS +FRC++GKCI VC+ + DC D SDE C V C C+ L
Sbjct: 87 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA-SCPVLTCGPASFQCNSSTCIPQL-- 143
Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVC-SQYPAMCHNRPCDKDTEFACRNGHCIPK 426
+ C+ + EDG E P C Y + PC EF C +G CI
Sbjct: 144 WACDNDPD---CEDGSD--------EWPQRCRGLYVFQGDSSPCSA-FEFHCLSGECIHS 191
Query: 427 LWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
W C E C C +C ++ CI CD + DC+D SDE
Sbjct: 192 SWRCDGGPDCKDKSDEEN--CAVATCRPDEFQC---SDGNCIHGSRQCDREYDCKDMSDE 246
Query: 487 L----------PQNCPLES-----LGSVCNGVNDCKDNITSDETHARCPSN 522
+ P S L VCN DC+D SDE C +N
Sbjct: 247 VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRD--WSDEPIKECGTN 295
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 43/136 (31%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE-------------PLHCNVDECAKVE 353
+TC +F+C++G CI C++E DC+D SDE C+ EC ++
Sbjct: 213 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 272
Query: 354 ---------------------TNQ-------CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
TN+ C H C D GY C C G++L+ + C
Sbjct: 273 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRC 331
Query: 386 TDIDECIEQPGVCSQY 401
DIDEC + P CSQ
Sbjct: 332 EDIDEC-QDPDTCSQL 346
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 24/167 (14%)
Query: 286 GSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
GS R +Y+ G ++S CS+ +F C +G+CI C+ DC+D SDE +C
Sbjct: 155 GSDEWPQRCRGLYVFQG--DSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE-NCA 211
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
V C E C+ C+ K + D C ++ C E P
Sbjct: 212 VATCRPDEFQCSDGNCIH--GSRQCDREYDCKDMSDEVGCVNVTLC-EGP---------- 258
Query: 406 HNRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNC 452
+F C +G CI VC EP C C
Sbjct: 259 --------NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNEC 297
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
C + +C + C+ W+CDG +C D SDE C TC F
Sbjct: 6 CERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDF 52
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
CK SI +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ +
Sbjct: 388 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 446
Query: 68 TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
I +++ G + + VI D +GLAVDW+ +YW D + VA+ G RK
Sbjct: 447 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 506
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
TL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +T
Sbjct: 507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 564
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
LD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++
Sbjct: 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
I A++ G D +L P D+ ++H L
Sbjct: 625 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 655
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 114/279 (40%), Gaps = 54/279 (19%)
Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 361
G C ++F+C +GKCI Y VC+ ++C+D SDE + K CG +
Sbjct: 17 GTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR- 75
Query: 362 VDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNG 421
V+ + C DG+ D D ++ G C + C +D EF C +G
Sbjct: 76 VNRCIPQFWRC--------DGQV--DCDNGSDEQG--------CPPKTCSQD-EFRCHDG 116
Query: 422 HCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCR 481
CI + +VC E + C C +C T CIP+ CD DC
Sbjct: 117 KCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST---CIPQLWACDNDPDCE 171
Query: 482 DGSDELPQNC-----------PLESL------------GSVCNGVNDCKDNITSDETHAR 518
DGSDE PQ C P + C+G DCKD SDE +
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDK--SDEENC- 228
Query: 519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
+ TC P +C++ N C+ CD + DC DMSDE
Sbjct: 229 --AVATCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 264
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 88/231 (38%), Gaps = 38/231 (16%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG 367
TCS +FRC++GKCI VC+ + DC D SDE C V C C+ L
Sbjct: 105 TCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA-SCPVLTCGPASFQCNSSTCIPQL-- 161
Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVC-SQYPAMCHNRPCDKDTEFACRNGHCIPK 426
+ C+ + EDG E P C Y + PC EF C +G CI
Sbjct: 162 WACDNDPD---CEDGSD--------EWPQRCRGLYVFQGDSSPCSA-FEFHCLSGECIHS 209
Query: 427 LWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
W C E C C +C ++ CI CD + DC+D SDE
Sbjct: 210 SWRCDGGPDCKDKSDEEN--CAVATCRPDEFQC---SDGNCIHGSRQCDREYDCKDMSDE 264
Query: 487 L----------PQNCPLES-----LGSVCNGVNDCKDNITSDETHARCPSN 522
+ P S L VCN DC+D SDE C +N
Sbjct: 265 VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRD--WSDEPIKECGTN 313
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 43/136 (31%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE-------------PLHCNVDECAKVE 353
+TC +F+C++G CI C++E DC+D SDE C+ EC ++
Sbjct: 231 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLD 290
Query: 354 ---------------------TNQ-------CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
TN+ C H C D GY C C G++L+ + C
Sbjct: 291 KVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQ-RRC 349
Query: 386 TDIDECIEQPGVCSQY 401
DIDEC + P CSQ
Sbjct: 350 EDIDEC-QDPDTCSQL 364
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 43/118 (36%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH-----------------CN--------- 345
++F+C++G+CI VCN DC D SDEP+ CN
Sbjct: 277 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECL 336
Query: 346 ---------------VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
+DEC +T C CV+ GY C+C G++L KAC +
Sbjct: 337 CPDGFQLVAQRRCEDIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 392
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
C + +C + C+ W+CDG +C D SDE C TC F
Sbjct: 24 CERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDF 70
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17 PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
P L+++N+ +R +DAT ++V L + A+DF + Y++DV+ + I R+
Sbjct: 5 PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 73 RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
TE + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L +
Sbjct: 63 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
PR I L P G++Y++ W I + GMDGS +R + +I WPN LTLDY ++L
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
YWADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +K+ G
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 239
Query: 251 RDYRVLRNTTHRPYDIHVY 269
R + + P DIH +
Sbjct: 240 EGLREIHSDIFSPMDIHAF 258
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
++ + D+ +D TN K T ++D + G +Y+S + +A I + + +
Sbjct: 9 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 67
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
+ + ++ P+ L D+ E+LYW D+ + I +LDG + ++ + P
Sbjct: 68 ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
AL +YWTDW I RA + ++ + + P + + +
Sbjct: 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
L GT R A + + + + +S + +++ + I
Sbjct: 187 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
+ + +P N ++ C H C+ + Y C C TG KLLE+
Sbjct: 247 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 303
Query: 382 GKACTD 387
GK C D
Sbjct: 304 GKTCKD 309
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17 PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
P L+++N+ +R +DAT ++V L + A+DF + Y++DV+ + I R+
Sbjct: 2 PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 73 RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
TE + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L +
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
PR I L P G++Y++ W I + GMDGS +R + +I WPN LTLDY ++L
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
YWADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +K+ G
Sbjct: 178 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 236
Query: 251 RDYRVLRNTTHRPYDIHVY 269
R + + P DIH +
Sbjct: 237 EGLREIHSDIFSPMDIHAF 255
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
++ + D+ +D TN K T ++D + G +Y+S + +A I + + +
Sbjct: 6 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 64
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
+ + ++ P+ L D+ E+LYW D+ + I +LDG + ++ + P
Sbjct: 65 ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
AL +YWTDW I RA + ++ + + P + + +
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
L GT R A + + + + +S + +++ + I
Sbjct: 184 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 243
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
+ + +P N ++ C H C+ + Y C C TG KLLE+
Sbjct: 244 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 382 GKACTD 387
GK C D
Sbjct: 301 GKTCKD 306
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17 PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
P L+++N+ +R +DAT ++V L + A+DF + Y++DV+ + I R+
Sbjct: 10 PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 67
Query: 73 RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
TE + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L +
Sbjct: 68 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
PR I L P G++Y++ W I + GMDGS +R + +I WPN LTLDY ++L
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 185
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
YWADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +K+ G
Sbjct: 186 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 244
Query: 251 RDYRVLRNTTHRPYDIHVY 269
R + + P DIH +
Sbjct: 245 EGLREIHSDIFSPMDIHAF 263
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENRFYFADV 64
TCK D L+ + + +R +SLD ++ L +D+ + +A+D+ E Y+ D
Sbjct: 311 TCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 368
Query: 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
+ I RS + + + V+ +G+AVDWV R LYW D + +++V L+GT RK
Sbjct: 369 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428
Query: 125 LKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L + +++PR I L P +GY+Y++ W I + +DGS+ R++ + WPN L L
Sbjct: 429 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVLVNTSLGWPNGLAL 486
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
DY ++YW DA D I ++ DG + +++ K+PH+F TL D++YWTDW +SI
Sbjct: 487 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGDYVYWTDWQRRSIE 545
Query: 244 RADK 247
R K
Sbjct: 546 RVHK 549
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 117 LDGTNRKTLKTAIQDPR---GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED 173
LD + + ++D R I P GY+Y++ ++A I + +DGS ++T +
Sbjct: 333 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQ- 390
Query: 174 DIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHI 232
IA P+ + +D+ LYW D D I L+G + I+IS + P L ++
Sbjct: 391 -IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYM 449
Query: 233 YWTDWN-TKSINRADKFNGRDYRVLRNTT-------HRPYDIHVYHPLKGTTRHAWLTAH 284
YWTDW I RA +G D VL NT+ YD + T +
Sbjct: 450 YWTDWGEIPKIERA-ALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508
Query: 285 RGS---TTVADMIRSVYLGSGNKENSTCSSSQFRC---NNGKCIDYHLVCNKESDCEDDS 338
G+ V D I ++ + + + Q R + + + ++ ++ D
Sbjct: 509 DGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLK 568
Query: 339 DEPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+H + CA+ E C H C+ G C C G++L+ D K C
Sbjct: 569 ATNVHRVIGSNPCAE-ENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
++ + D+ +D TN K T ++D + G +Y+S + +A I + + +
Sbjct: 14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 72
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
+ + ++ P+ L D+ E+LYW D+ + I +LDG + ++ + P
Sbjct: 73 ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
AL +YWTDW I RA + ++ + + P + + +
Sbjct: 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
L GT R A + + + + +S + +++ + I
Sbjct: 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
+ + +P N ++ C H C+ + Y C C TG KLLE+
Sbjct: 252 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 308
Query: 382 GKACTD 387
GK C D
Sbjct: 309 GKTCKD 314
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17 PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
P L+++N+ +R +DAT ++V L + A+DF + Y++DV+ + I R+
Sbjct: 2 PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 73 RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
TE + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L +
Sbjct: 60 EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
PR I L P G++Y++ W I + GMDGS +R + +I WPN LTLDY ++L
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
YWADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +K+ G
Sbjct: 178 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 236
Query: 251 RDYRVLRNTTHRPYDIHVY 269
R + + P DIH +
Sbjct: 237 EGLREIHSDIFSPMDIHAF 255
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 136/244 (55%), Gaps = 9/244 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENRFYFADV 64
TCK D L+ + + +R +SLD ++ L +D+ + +A+D+ E Y+ D
Sbjct: 303 TCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD 360
Query: 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
+ I RS + + + V+ +G+AVDWV R LYW D + +++V L+GT RK
Sbjct: 361 EVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 420
Query: 125 LKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L + +++PR I L P +GY+Y++ W I + +DGS+ R++ + WPN L L
Sbjct: 421 LISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSD--RVVLVNTSLGWPNGLAL 478
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
DY ++YW DA D I ++ DG + +++ K+PH+F TL D++YWTDW +SI
Sbjct: 479 DYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-DKIPHIFGFTLLGDYVYWTDWQRRSIE 537
Query: 244 RADK 247
R K
Sbjct: 538 RVHK 541
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 117 LDGTNRKTLKTAIQDPR---GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED 173
LD + + ++D R I P GY+Y++ ++A I + +DGS ++T +
Sbjct: 325 LDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQ- 382
Query: 174 DIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHI 232
IA P+ + +D+ LYW D D I L+G + I+IS + P L ++
Sbjct: 383 -IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYM 441
Query: 233 YWTDWN-TKSINRADKFNGRDYRVLRNTT-------HRPYDIHVYHPLKGTTRHAWLTAH 284
YWTDW I RA +G D VL NT+ YD + T +
Sbjct: 442 YWTDWGEIPKIERA-ALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 500
Query: 285 RGS---TTVADMIRSVYLGSGNKENSTCSSSQFRC---NNGKCIDYHLVCNKESDCEDDS 338
G+ V D I ++ + + + Q R + + + ++ ++ D
Sbjct: 501 DGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLK 560
Query: 339 DEPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+H + CA+ E C H C+ G C C G++L+ D K C
Sbjct: 561 ATNVHRVIGSNPCAE-ENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 608
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
++ + D+ +D TN K T ++D + G +Y+S + +A I + + +
Sbjct: 6 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 64
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
+ + ++ P+ L D+ E+LYW D+ + I +LDG + ++ + P
Sbjct: 65 ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
AL +YWTDW I RA + ++ + + P + + +
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
L GT R A + + + + +S + +++ + I
Sbjct: 184 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 243
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
+ + +P N ++ C H C+ + Y C C TG KLLE+
Sbjct: 244 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 382 GKACTD 387
GK C D
Sbjct: 301 GKTCKD 306
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 181 bits (460), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
CK SI +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ +
Sbjct: 116 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 174
Query: 68 TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
I +++ G + + VI D +GLAVDW+ +YW D + VA+ G RK
Sbjct: 175 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 234
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
TL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +T
Sbjct: 235 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 292
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
LD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++
Sbjct: 293 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 352
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
I A++ G D +L P D+ ++H L
Sbjct: 353 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 383
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYC 370
++F+C++G+CI VCN DC D SDEP+ C +EC C H C D GY C
Sbjct: 5 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD-NNGGCSHVCNDLKIGYEC 63
Query: 371 ECNTGYKLLEDGKACTDIDECIEQPGVCSQ 400
C G++L+ + C DIDEC + P CSQ
Sbjct: 64 LCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQ 91
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 180 bits (457), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
CK SI +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ +
Sbjct: 76 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 134
Query: 68 TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
I +++ G + + VI D +GLAVDW+ +YW D + VA+ G RK
Sbjct: 135 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
TL + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +T
Sbjct: 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 252
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
LD + RLYW D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++
Sbjct: 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 312
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
I A++ G D +L P D+ ++H L
Sbjct: 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 343
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
++DEC +T C CV+ GY C+C G++L KAC +
Sbjct: 39 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 80
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 153/261 (58%), Gaps = 8/261 (3%)
Query: 18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV--- 74
+L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ + I +++
Sbjct: 3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 75 -GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDP 132
G + + VI D +GLAVDW+ +YW D + VA+ G RKTL + P
Sbjct: 63 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
R I + P G++Y++ W A I K G++G + ++T ++I WPN +TLD + RLYW
Sbjct: 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYW 180
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNGR 251
D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++I A++ G
Sbjct: 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240
Query: 252 DYRVLRNTTHRPYDIHVYHPL 272
D +L P D+ ++H L
Sbjct: 241 DVNLLAENLLSPEDMVLFHNL 261
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16 KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
+ +L+FS + +R +SL+ ++ + A+DF +NR Y+ D++ KTI R+
Sbjct: 6 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 74 VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
+ + E V+ EG+AVDW+G+ LYW D + +++V++LDG +R+ L + P
Sbjct: 66 MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 125
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
R + L P G++Y++ W + I + MDGS T ++ ++ N LT+DY RLYW
Sbjct: 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 182
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
D + I S ++ G ++ ++ +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 183 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240
Query: 253 YRVLRNTTHRPYDIHVYH 270
+++ DI V+H
Sbjct: 241 RTIIQGHLDYVMDILVFH 258
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 18 WLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
+L+FS K + M +D Q L L NV A+D+ + + Y+ D I +++
Sbjct: 310 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 369
Query: 75 GSTEKERVIRHD--SHGLE----GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA 128
++ V+ S LE L++D R +YW + ++V LDG + +
Sbjct: 370 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 429
Query: 129 IQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTRILTHEDDIAWPNALTLD 184
QD PR + ++P GY+YF+ NLQ KI +DG+ R + ++ P AL LD
Sbjct: 430 EQDRPRAVVVNPEKGYMYFT--NLQERSPKIERAALDGTE--REVLFFSGLSKPIALALD 485
Query: 185 YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
+L+WAD+ L I S DL G ++ IV+ + LT+FE+ +YW D + I +
Sbjct: 486 SRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEK 544
Query: 245 ADKFNGRDYRV-LRNTTHRPYDIHVYHPL 272
D GR+ R ++ + DIH L
Sbjct: 545 ID-MTGREGRTKVQARIAQLSDIHAVKEL 572
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 165 bits (417), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16 KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
+ +L+FS + +R +SL+ ++ + A+DF +NR Y+ D++ KTI R+
Sbjct: 4 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 63
Query: 74 VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
+ + E V+ EG+AVDW+G+ LYW D + +++V++LDG +R+ L + P
Sbjct: 64 MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 123
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
R + L P G++Y++ W + I + MDGS T ++ ++ N LT+DY RLYW
Sbjct: 124 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 180
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
D + I S ++ G ++ ++ +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 181 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 238
Query: 253 YRVLRNTTHRPYDIHVYH 270
+++ DI V+H
Sbjct: 239 RTIIQGHLDYVMDILVFH 256
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 18 WLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
+L+FS K + M +D Q L L NV A+D+ + + Y+ D I +++
Sbjct: 308 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 367
Query: 75 GSTEKERVIRHD--SHGLE----GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA 128
++ V+ S LE L++D R +YW + ++V LDG + +
Sbjct: 368 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 427
Query: 129 IQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTRILTHEDDIAWPNALTLD 184
QD PR I ++P GY+YF+ NLQ KI +DG+ R + ++ P AL LD
Sbjct: 428 EQDRPRAIVVNPEKGYMYFT--NLQERSPKIERAALDGTE--REVLFFSGLSKPIALALD 483
Query: 185 YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
+L+WAD+ L I S DL G ++ IV+ + LT+FE+ +YW D + I +
Sbjct: 484 SRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEK 542
Query: 245 ADKFNGRDYRV-LRNTTHRPYDIHVYHPL 272
D GR+ R ++ + DIH L
Sbjct: 543 ID-MTGREGRTKVQARIAQLSDIHAVKEL 570
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 164 bits (416), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16 KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
+ +L+FS + +R +SL+ ++ + A+DF +NR Y+ D++ KTI R+
Sbjct: 11 EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 70
Query: 74 VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
+ + E V+ EG+AVDW+G+ LYW D + +++V++LDG +R+ L + P
Sbjct: 71 MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 130
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
R + L P G++Y++ W + I + MDGS T ++ ++ N LT+DY RLYW
Sbjct: 131 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 187
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
D + I S ++ G ++ ++ +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 188 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 245
Query: 253 YRVLRNTTHRPYDIHVYH 270
+++ DI V+H
Sbjct: 246 RTIIQGHLDYVMDILVFH 263
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 128/269 (47%), Gaps = 20/269 (7%)
Query: 18 WLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
+L+FS K + M +D Q L L NV A+D+ + + Y+ D I +++
Sbjct: 315 FLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQE 374
Query: 75 GSTEKERVIRHD--SHGLE----GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA 128
++ V+ S LE L++D R +YW + ++V LDG + +
Sbjct: 375 DGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKG 434
Query: 129 IQD-PRGITLHPGIGYVYFSSWNLQAYIGKI---GMDGSNFTRILTHEDDIAWPNALTLD 184
QD PR I ++P GY+YF+ NLQ KI +DG+ R + ++ P AL LD
Sbjct: 435 EQDRPRAIVVNPEKGYMYFT--NLQERSPKIERAALDGTE--REVLFFSGLSKPIALALD 490
Query: 185 YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
+L+WAD+ L I S DL G ++ IV+ + LT+FE+ +YW D + I +
Sbjct: 491 SRLGKLFWADSDLRRIESSDLSGANR-IVLEDSNILQPVGLTVFENWLYWIDKQQQMIEK 549
Query: 245 ADKFNGRDYRV-LRNTTHRPYDIHVYHPL 272
D GR+ R ++ + DIH L
Sbjct: 550 ID-MTGREGRTKVQARIAQLSDIHAVKEL 577
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 6/221 (2%)
Query: 28 RNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS 87
RN + +H ++ + F + Y+ D++ +I R+ + E +IR D
Sbjct: 19 RNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL 78
Query: 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYF 146
EG+A+D +GR ++W D +++VA++DGT R+ L T + +PRGI P G +Y+
Sbjct: 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYW 138
Query: 147 SSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205
+ WN I MDG+N R + +D++ PN LT D F+ +L W DA ++
Sbjct: 139 TDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196
Query: 206 DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
+ V+ G + P FA+T + ++Y+TDW T S+ D
Sbjct: 197 AQPGRRKVLEGLQYP--FAVTSYGKNLYYTDWKTNSVIAMD 235
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 415 EFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFC 474
EF C++G CI WVC E C C G C G+ N RCIP++ C
Sbjct: 12 EFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-RCIPQFWRC 70
Query: 475 DGKDDCRDGSDE 486
DG+ DC +GSDE
Sbjct: 71 DGQVDCDNGSDE 82
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 499 VCNGVNDCKDNITSDETHARCPSNITCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDE 557
VC+G +C+D SDE+ C S +TC C N C+ +W CDG DC + SDE
Sbjct: 26 VCDGSAECQDG--SDESQETCLS-VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 82
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH 343
C ++F+C +GKCI Y VC+ ++C+D SDE
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
C + +C + C+ W+CDG +C D SDE C TC F
Sbjct: 8 CERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETCLSVTCKSGDF 54
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYC 370
++F+C++G+CI VCN DC D SDEP+ C +EC C H C D GY C
Sbjct: 10 NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD-NNGGCSHVCNDLKIGYEC 68
Query: 371 ECNTGYKLL 379
C G++L+
Sbjct: 69 LCPDGFQLV 77
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
TC P C T++CV WLCDGD DC D +DE
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
+ C CPG + C+P+ CDG DC DG+DE
Sbjct: 7 KTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE 41
>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 217
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 448 RQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE--SLGSVCNGV 503
+ +C + C G CI LFCDG+ DCRDGSDE P+ C L +GS G+
Sbjct: 50 EEHHCDEHESECRGDVP-ECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGL 106
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 525 CPPHHLKC-ANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
C H +C + C+ CDG+ DC D SDEDP C
Sbjct: 54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 92
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
TC P C T++CV WLCDGD DC D +DE
Sbjct: 6 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
+ C CPG + C+P+ CDG DC DG+DE
Sbjct: 5 KTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE 39
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 35/114 (30%)
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
+ C++ RC + +CI + CD DC DGSDE +CP+
Sbjct: 1 KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDEA--SCPV---------------- 39
Query: 510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
+TC P +C N++ C+ W CD D DC D SDE P C+
Sbjct: 40 -------------LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
TCS ++FRC++GKCI VC+ + DC D SDE
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 414 TEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLF 473
EF C +G CI + +VC E + C C +C T CIP+
Sbjct: 6 AEFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST---CIPQLWA 60
Query: 474 CDGKDDCRDGSDELPQNC 491
CD DC DGSDE PQ C
Sbjct: 61 CDNDPDCEDGSDEWPQRC 78
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 275 TTRHAWLTAHRGSTT----VADMIRSVYLGSGNKENS--TCSSSQFRCNNGKCIDYHLVC 328
T A H G V D R GS TC + F+CN+ CI C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWAC 61
Query: 329 NKESDCEDDSDE-PLHC 344
+ + DCED SDE P C
Sbjct: 62 DNDPDCEDGSDEWPQRC 78
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 521 SNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
S C P CAN+ C++ W CDGDNDC D SDE P C Q
Sbjct: 2 SPPQCQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 463 TNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
N RCI + CDG +DC D SDE P C
Sbjct: 14 ANSRCIQERWKCDGDNDCLDNSDEAPALC 42
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
C +F C N +CI C+ ++DC D+SDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
+CSS+QF+CN+G+CI H C+ ++DC D SDE
Sbjct: 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
+C KC N+ C+ +W CDGDNDCGD SDE +C +
Sbjct: 4 SCSSTQFKC-NSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 466 RCIPKWLFCDGKDDCRDGSDELPQNC 491
RCIP+ CDG +DC D SDE NC
Sbjct: 16 RCIPEHWTCDGDNDCGDYSDETHANC 41
>pdb|3OJY|B Chain B, Crystal Structure Of Human Complement Component C8
Length = 537
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 515 THARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
T+ C S + C CA T CV LC+GDNDCGD SDE
Sbjct: 58 TNRPCRSQVRC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 312 SQFRC------NNGKCIDYHLVCNKESDCEDDSDE 340
SQ RC G+C++ L+CN ++DC D SDE
Sbjct: 64 SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE 98
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 466 RCIPKWLFCDGKDDCRDGSDE-----LPQNCPLE-----SLGSVCNGVNDCKDNITSDET 515
RC+ + L C+G +DC D SDE + + C E +GS+ +G+N ++
Sbjct: 78 RCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGIGSLASGINLFTNSFEGPVL 137
Query: 516 HARCPSNITCPPHHL 530
R + C PH++
Sbjct: 138 DHRYYAG-GCSPHYI 151
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat From
The Low-Density Lipoprotein Receptor
Length = 48
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 341
G+ C ++F+C +GKCI Y VC+ ++C+D SDE
Sbjct: 1 GSAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDES 40
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
C + +C + C+ W+CDG +C D SDE C
Sbjct: 8 CERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETC 44
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
++FRC++G+CI L CN E+DC D+SDE
Sbjct: 121 NKFRCDSGRCIARKLECNGENDCGDNSDE 149
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 466 RCIPKWLFCDGKDDCRDGSDE 486
RCI + L C+G++DC D SDE
Sbjct: 129 RCIARKLECNGENDCGDNSDE 149
>pdb|3F1S|B Chain B, Crystal Structure Of Protein Z Complexed With Protein
Z-Dependent Inhibitor
Length = 283
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
+EC T+ C H C+ Y C C GY+L ED K C D+C
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 47
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
TCPP+ CA + C+ W CD D+DCGD SDE
Sbjct: 4 TCPPNQFSCA-SGRCIPISWTCDLDDDCGDRSDE 36
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
+QF CNNG+CI+ + C+ ++DC D+SDE
Sbjct: 49 TQFTCNNGRCININWRCDNDNDCGDNSDE 77
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 32/92 (34%), Gaps = 30/92 (32%)
Query: 466 RCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITC 525
RCIP CD DDC D SDE A C
Sbjct: 16 RCIPISWTCDLDDDCGDRSDE-----------------------------SASCAYPTCF 46
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
P C N C+ W CD DNDCGD SDE
Sbjct: 47 PLTQFTC-NNGRCININWRCDNDNDCGDNSDE 77
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH-KCVD 363
TC +QF C +G+CI C+ + DC D SDE C C + C + +C++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 17/79 (21%)
Query: 415 EFACRNGHCIPKLWVCXXXXXXXXXXXEPA-------YMCRQRNCTKGWERCPGKTNYRC 467
+F+C +G CIP W C E A + Q C G RC
Sbjct: 9 QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----------RC 58
Query: 468 IPKWLFCDGKDDCRDGSDE 486
I CD +DC D SDE
Sbjct: 59 ININWRCDNDNDCGDNSDE 77
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
+EC T+ C H C+ Y C C GY+L ED K C D+C
Sbjct: 44 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC 88
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
D T CEC GY +L+DG CTDIDEC E G CS +CHN P
Sbjct: 56 DPNTQASCECPEGY-ILDDGFICTDIDEC-ENGGFCS---GVCHNLP 97
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
D T CEC GY +L+DG CTDIDEC E G CS +CHN P
Sbjct: 56 DPNTQASCECPEGY-ILDDGFICTDIDEC-ENGGFCS---GVCHNLP 97
>pdb|3DEM|A Chain A, Cub1-egf-cub2 Domain Of Human Masp-1/3
pdb|3DEM|B Chain B, Cub1-egf-cub2 Domain Of Human Masp-1/3
Length = 278
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 342 LHCNVDECAKVETNQ--CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+ +VDEC + E + C H C + + GYYC C GY L D + C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 342 LHCNVDECAKVETNQ--CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+ +VDEC + E + C H C + + GYYC C GY L D + C
Sbjct: 117 MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 345 NVDEC--AKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
++DEC A E C H C + L G+YC C GY L + + C++
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
+TC P +C N++ C+ W CD D DC D SDE P C+
Sbjct: 5 LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCR 44
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 36/96 (37%), Gaps = 30/96 (31%)
Query: 467 CIPKWLFCDGKDDCRDGSDELPQNC----PLESLGSVCNGVNDCKDNITSDETHARCPSN 522
CIP+ CD DC DGSDE PQ C + S C+ E H
Sbjct: 19 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAF----------EFHCL---- 64
Query: 523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
+ C+ W CDG DC D SDE+
Sbjct: 65 ------------SGECIHSSWRCDGGPDCKDKSDEE 88
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
TC + F+CN+ CI C+ + DCED SDE
Sbjct: 6 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 38
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 286 GSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
GS R +Y+ G+ +S CS+ +F C +G+CI C+ DC+D SDE
Sbjct: 35 GSDEWPQRCRGLYVFQGD--SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 87
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 414 TEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLF 473
F C + CIP+LW C E CR +G + C+
Sbjct: 10 ASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECI 69
Query: 474 -----CDGKDDCRDGSDELPQNCPLES 495
CDG DC+D SDE +NC + +
Sbjct: 70 HSSWRCDGGPDCKDKSDE--ENCAVAT 94
>pdb|2GTL|O Chain O, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 215
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE----LPQNCPLESLGSVC 500
+C + +C G + +CI K CDG +DCR+G DE LP + +G VC
Sbjct: 54 SCDEHEHQC-GGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVC 106
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
TC P +C N++ C+ W CD D DC D SDE P C+
Sbjct: 1 TCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCR 39
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE-PLHC 344
TC + F+CN+ CI C+ + DCED SDE P C
Sbjct: 1 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 38
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 16/25 (64%)
Query: 467 CIPKWLFCDGKDDCRDGSDELPQNC 491
CIP+ CD DC DGSDE PQ C
Sbjct: 14 CIPQLWACDNDPDCEDGSDEWPQRC 38
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 345 NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDG----KACTDIDECIEQPGVCS 399
++DEC ++ + CG +CV+T + C+C+ GY E G K C DIDEC P +C
Sbjct: 2 DIDEC-RISPDLCGRGQCVNTPGDFECKCDEGY---ESGFMMMKNCMDIDECQRDPLLCR 57
Query: 400 QYPAMCHN 407
+CHN
Sbjct: 58 G--GVCHN 63
>pdb|1APQ|A Chain A, Structure Of The Egf-Like Module Of Human C1r, Nmr, 19
Structures
Length = 53
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 345 NVDECAKVETN-------QCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DECA + QC H C + + GY+C C GY+L ED +C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSC 50
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 516 HARCPSNITCP-----PHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
A C S+ TC +C T C++ + +C+GD DC D SDED
Sbjct: 51 QASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDED 98
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 314 FRCN-NGKCIDYHLVCNKESDCEDDSDE 340
F+C G+C+ HLVCN + DC D SDE
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSDE 97
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 448 RQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
RQ C + ++ C K RC+ + L C+G DC DGSDE
Sbjct: 62 RQAQCGQDFQ-C--KETGRCLKRHLVCNGDQDCLDGSDE 97
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC ++ G KC++T + C C TGY L ED + C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC ++ G KC++T + C C TGY L ED + C
Sbjct: 121 DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 345 NVDECAKVETNQCGHKCVDTLTG-YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
+VDEC+ ++ + CG + G + CEC GY+ K+C DIDEC E +C+Q
Sbjct: 2 DVDECS-LKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSEN--MCAQ--- 55
Query: 404 MCHNRP 409
+C N P
Sbjct: 56 LCVNYP 61
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECN--TGYKLLEDGKAC 385
++DEC++ N C CV+ GY C C+ G+KL +D K+C
Sbjct: 44 DIDECSE---NMCAQLCVNYPGGYTCYCDGKKGFKLAQDQKSC 83
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
C G C G+ N RCIP++ CDG+ DC +GSDE
Sbjct: 7 CKSGDFSCGGRVN-RCIPQFWRCDGQVDCDNGSDE 40
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 522 NITCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDE 557
++TC C N C+ +W CDG DC + SDE
Sbjct: 4 SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 40
>pdb|1NT0|A Chain A, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
pdb|1NT0|G Chain G, Crystal Structure Of The Cub1-Egf-Cub2 Region Of Masp2
Length = 286
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 345 NVDEC--AKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
+VDEC + ++ C H C L GYYC C GY L ++ C+ +
Sbjct: 119 DVDECRTSLGDSVPCDHYCHXYLGGYYCSCRVGYILHQNKHTCSAL 164
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 538 CVEPYWLCDGDNDCGDMSDE 557
C+ W+CD DNDCGD SDE
Sbjct: 19 CISKNWVCDTDNDCGDGSDE 38
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDE 348
++C +Q+ C+N +CI + VC+ ++DC D SDE +CN E
Sbjct: 5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEK-NCNSTE 45
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 464 NYRCIPKWLFCDGKDDCRDGSDE 486
N++CI K CD +DC DGSDE
Sbjct: 16 NHQCISKNWVCDTDNDCGDGSDE 38
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
+TC +F+C++G CI C++E DC+D SDE
Sbjct: 2 ATCRPDEFQCSDGNCIHGSRQCDREYDCKDLSDE 35
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKAC-TDIDECIEQP 395
+VDEC+ + N C H KC++TL + C+C GY G C D++EC+ P
Sbjct: 4 DVDECS-LGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP 52
>pdb|2K2S|B Chain B, Structure Of The Mic1-GldMIC6-Egf Complex From Toxoplasma
Gondii
pdb|2K2T|A Chain A, Epidermal Growth Factor-Like Domain 2 From Toxoplasma
Gondii Microneme Protein 6
Length = 61
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 338 SDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDG 382
S+ P C+ + C + C +T +GY C CN GY++ DG
Sbjct: 8 SETPAACSSNPCGP----EAAGTCKETNSGYICRCNQGYRISLDG 48
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
TC +F+C++G CI C++E DC+D SDE
Sbjct: 2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
TC P +C++ N C+ CD + DC DMSDE
Sbjct: 2 TCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 34
>pdb|1NZI|A Chain A, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
pdb|1NZI|B Chain B, Crystal Structure Of The Cub1-Egf Interaction Domain Of
Complement Protease C1s
Length = 159
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+++EC C H C + + GY+C C Y L +D K C
Sbjct: 116 DINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 156
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKAC-TDIDECIEQP 395
+VDEC+ + N C H KC++TL + C+C GY G C D++EC+ P
Sbjct: 2 DVDECS-LGANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP 50
>pdb|1V9U|5 Chain 5, Human Rhinovirus 2 Bound To A Fragment Of Its Cellular
Receptor Protein
Length = 41
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 524 TCPPHHLKC-ANTNICVEPYWLCDGDNDCGDMSDED 558
TC H + C A++ C+ W CDG+NDC DE+
Sbjct: 2 TCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 37
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 309 CSSSQFRCNNGK-CIDYHLVCNKESDCEDDSDE 340
C+S+QF+C +G CI+ C+ DC D+SDE
Sbjct: 7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
+ C KCA+ + C+ + CDG DC D SDE
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
>pdb|1CR8|A Chain A, Low Density Lipoprotein Receptor-Related Protein
Complement Repeat 8
Length = 42
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
C +C +C+ W CDGD DC D SDE
Sbjct: 4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC--PLESLGSVCNGVN 504
+C K +C G CI L CDG DC + DE P C + G+V +G +
Sbjct: 52 HCEKRTFQCGGNEQ-ECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTS 106
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 525 CPPHHLKCA-NTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
C +C N C+ +CDG DC + DEDP C
Sbjct: 53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 91
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC +T C CV+ GY C+C G++L KAC
Sbjct: 68 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC +T C CV+ GY C+C G++L KAC
Sbjct: 68 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>pdb|1FQI|A Chain A, Rgs9 Rgs Domain
Length = 147
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIY 233
+++DGK I + G K PH + L + HIY
Sbjct: 88 INIDGKTXDITVKGLKHPHRYVLDAAQTHIY 118
>pdb|1FQJ|B Chain B, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQJ|E Chain E, Crystal Structure Of The Heterotrimeric Complex Of The Rgs
Domain Of Rgs9, The Gamma Subunit Of Phosphodiesterase
And The GtI1 CHIMERA ALPHA SUBUNIT [(RGS9)-(Pdegamma)-
(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|B Chain B, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
pdb|1FQK|D Chain D, Crystal Structure Of The Heterodimeric Complex Of The Rgs
Domain Of Rgs9, And The GtI1 CHIMERA ALPHA SUBUNIT
[(Rgs9)-(GtI1ALPHA)-(Gdp)-(Alf4-)-(Mg2+)]
Length = 147
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIY 233
+++DGK I + G K PH + L + HIY
Sbjct: 88 INIDGKTMDITVKGLKHPHRYVLDAAQTHIY 118
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 345 NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
++DEC E + C H +C++T Y CEC GY L G C D DEC
Sbjct: 4 DMDECK--EPDVCKHGQCINTDGSYRCECPFGYILA--GNECVDTDEC 47
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
++DEC +T C CV+ GY C+C G++L KAC +
Sbjct: 41 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 82
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC +T C CV+ GY C+C G++L KAC
Sbjct: 41 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 79
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC +T C CV+ GY C+C G++L KAC
Sbjct: 44 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
G+ C QF+C N +CI C+++ DC D SDE
Sbjct: 1 GSGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 408 RPCDKDTEFACRNGHCIPKLWVC 430
+ C+KD +F CRN CIP +W C
Sbjct: 6 KECEKD-QFQCRNERCIPSVWRC 27
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
C +C N C+ W CD D+DC D SDED
Sbjct: 8 CEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDED 40
>pdb|1DQB|A Chain A, Nmr Structure Of Thrombomodulin Egf(4-5)
Length = 83
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDE 390
D T CEC GY +L+DG CTDIDE
Sbjct: 57 DPNTQASCECPEGY-ILDDGFICTDIDE 83
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
++DEC +T C CV+ GY C+C G++L KAC
Sbjct: 44 DIDECQDPDT--CSQLCVNLEGGYKCQCEEGFQLDPHTKAC 82
>pdb|1DAN|L Chain L, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1FAK|L Chain L, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1WQV|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1WSS|L Chain L, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|L Chain L, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2A2Q|L Chain L, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AEI|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2ZP0|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|L Chain L, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|L Chain L, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
Length = 152
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 309 CSSSQFRCNNGKCID-------YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 361
C+SS + N G C D + L + +CE D+ L C E C C
Sbjct: 50 CASSPCQ-NGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC------VNENGGCEQYC 102
Query: 362 VD-TLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAM 404
D T T C C+ GY LL DG +CT +E P C + P +
Sbjct: 103 SDHTGTKRSCRCHEGYSLLADGVSCTPT---VEYP--CGKIPIL 141
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North
Atlantic Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 290 VADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVC---NKESDCEDDSDEPLHCNV 346
++D ++ +L S +++TCSSS + G + +VC S C DS PL+C V
Sbjct: 141 LSDSLKQAWLPS--VDHATCSSSGWW---GSTVKTTMVCAGGGANSGCNGDSGGPLNCQV 195
Query: 347 D 347
+
Sbjct: 196 N 196
>pdb|3DPR|E Chain E, Human Rhinovirus 2 Bound To A Concatamer Of The Vldl
Receptor Module V3
Length = 39
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 525 CPPHHLKC-ANTNICVEPYWLCDGDNDCGDMSDED 558
C H + C A++ C+ W CDG+NDC DE+
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
C+ G+ C T +C+P+ L C+G DDC + +DE
Sbjct: 7 CSLGYFPCGNIT--KCLPQLLHCNGVDDCGNQADE 39
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
++ C + C N C+ C+G +DCG+ +DED
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
>pdb|1Z6J|L Chain L, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|2AER|L Chain L, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2FIR|L Chain L, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|L Chain L, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2B8O|L Chain L, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2EC9|L Chain L, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|3TH2|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|L Chain L, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
Length = 142
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 292 DMIRSVYLGSGNKENSTCSSSQFRCNNGKCID-------YHLVCNKESDCEDDSDEPLHC 344
D R+ + C+SS + N G C D + L + +CE D+ L C
Sbjct: 33 DAXRTKLFWISYSDGDQCASSPCQ-NGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC 91
Query: 345 NVDECAKVETNQCGHKCVD-TLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
E C C D T T C C+ GY LL DG +CT +E P C + P
Sbjct: 92 ------VNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT---VEYP--CGKIPI 140
Query: 404 M 404
+
Sbjct: 141 L 141
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVET 354
C F C +G CI CN E DC DE A+ ET
Sbjct: 240 ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEET 286
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 499 VCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
C+G+NDC D SDE + C C + +C+ + C+G+ DC ++ ED
Sbjct: 222 ACDGINDCGDQ--SDELCCK-----ACQGKGFHC-KSGVCIPSQYQCNGEVDC--ITGED 271
Query: 559 PLHC 562
+ C
Sbjct: 272 EVGC 275
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 524 TCPPHHLKCANT----NICVEPYWLCDGDNDCGDMSDE 557
+CPP +C+ C WLCDG DC D DE
Sbjct: 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
>pdb|1ADX|A Chain A, Fifth Egf-Like Domain Of Thrombomodulin (Tmegf5), Nmr, 14
Structures
pdb|2ADX|A Chain A, Fifth Egf-Like Domain Of Thrombomodulin (Tmegf5), Nmr,
Minimized Average Structure
Length = 40
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDE 390
D T CEC GY +L+DG CTDIDE
Sbjct: 14 DPNTQASCECPEGY-ILDDGFICTDIDE 40
>pdb|1AJJ|A Chain A, Ldl Receptor Ligand-Binding Module 5, Calcium-Coordinating
Length = 37
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
CS+ +F C +G+CI C+ DC+D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
>pdb|1W0Y|L Chain L, Tf7a_3771 Complex
pdb|1W2K|L Chain L, Tf7a_4380 Complex
Length = 142
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 309 CSSSQFRCNNGKCID-------YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 361
C+SS + N G C D + L + +CE D+ L C E C C
Sbjct: 50 CASSPCQ-NGGSCKDQLQSYICFCLPAFEGRNCETHKDDQLIC------VNENGGCEQYC 102
Query: 362 VD-TLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAM 404
D T T C C+ GY LL DG +CT +E P C + P +
Sbjct: 103 SDHTGTKRSCRCHEGYSLLADGVSCTPT---VEYP--CGKIPIL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,429,383
Number of Sequences: 62578
Number of extensions: 862053
Number of successful extensions: 2135
Number of sequences better than 100.0: 138
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1587
Number of HSP's gapped (non-prelim): 313
length of query: 573
length of database: 14,973,337
effective HSP length: 104
effective length of query: 469
effective length of database: 8,465,225
effective search space: 3970190525
effective search space used: 3970190525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)